
R version 2.10.1 (2009-12-14)
Copyright (C) 2009 The R Foundation for Statistical Computing
ISBN 3-900051-07-0

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> source("/xchip/tcga/gdac_prod/applications/process_mgmt/firehose_task_registry/tcga-gdac/GDAC_Correlate_Genomic_Events/broadinstitute.org/cancer.genome.analysis/10441/13/Correlate_Genomic_Events.R")
> result <- main("/xchip/tcga/gdac_prod/applications/process_mgmt/firehose_task_registry/tcga-gdac/GDAC_Correlate_Genomic_Events/broadinstitute.org/cancer.genome.analysis/10441/13/", "-nF=/xchip/tcga/Tools/Nozzle/v1.current", "-tTRUE", "-iD=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/PAAD-TP/8204624/transformed.cor.cli.txt", "-iC=/xchip/cga/gdac-prod/tcga-gdac/jobResults/Append_Data/PAAD-TP/8143022/PAAD-TP.merged_data.txt", "-fF=", "-fC=3", "-fH=5", "-fW=9", "-fP=OUT", "-cP=1", "-cQ=0.25", "-MF=ONLYSIG", "-oT=PAAD-TP", "-nV=Nozzle.R1", "-OP=MUTSIG", "-iT=", "-iX=")
[1] "terrence_modification_tag"
[1] TRUE
[1] "nver"          "-nV=Nozzle.R1"
[1] "nfn"                                 "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "successfully load Nozzle.R1"
[1] "ofn"         "-oT=PAAD-TP"
[1] "opt"        "-OP=MUTSIG"
[1] "tl"   "-iT="
[1] "dx"   "-iX="
[1] "opt"    "MUTSIG"
[1] "dx" ""  
[1] "cfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/Append_Data/PAAD-TP/8143022/PAAD-TP.merged_data.txt"
[1] "dfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/PAAD-TP/8204624/transformed.cor.cli.txt"

nPatients in clinical file=76, in cluster file=91, common to both=72
[1] "Reduce the number of clustering variables from 489 to 451."
[1] 451  72
[1] "ATRX MUTATION ANALYSIS"
[1] 3
  ATRX MUTATED ATRX WILD-TYPE 
             6             66 
  ATRX MUTATED ATRX WILD-TYPE 
             6             66 
[1] "GRIN1 MUTATION ANALYSIS"
[1] 3
  GRIN1 MUTATED GRIN1 WILD-TYPE 
              5              67 
  GRIN1 MUTATED GRIN1 WILD-TYPE 
              5              67 
[1] "DHX9 MUTATION ANALYSIS"
[1] 3
  DHX9 MUTATED DHX9 WILD-TYPE 
             8             64 
  DHX9 MUTATED DHX9 WILD-TYPE 
             8             64 
[1] "HIBCH MUTATION ANALYSIS"
[1] 3
  HIBCH MUTATED HIBCH WILD-TYPE 
              6              66 
  HIBCH MUTATED HIBCH WILD-TYPE 
              6              66 
[1] "AFTPH MUTATION ANALYSIS"
[1] 3
  AFTPH MUTATED AFTPH WILD-TYPE 
             11              61 
  AFTPH MUTATED AFTPH WILD-TYPE 
             11              61 
[1] "APP MUTATION ANALYSIS"
[1] 3
  APP MUTATED APP WILD-TYPE 
           10            62 
  APP MUTATED APP WILD-TYPE 
           10            62 
[1] "TMC4 MUTATION ANALYSIS"
[1] 3
  TMC4 MUTATED TMC4 WILD-TYPE 
            17             55 
  TMC4 MUTATED TMC4 WILD-TYPE 
            17             55 
[1] "KIAA0020 MUTATION ANALYSIS"
[1] 3
  KIAA0020 MUTATED KIAA0020 WILD-TYPE 
                 4                 68 
  KIAA0020 MUTATED KIAA0020 WILD-TYPE 
                 4                 68 
[1] "BRDT MUTATION ANALYSIS"
[1] 3
  BRDT MUTATED BRDT WILD-TYPE 
            17             55 
  BRDT MUTATED BRDT WILD-TYPE 
            17             55 
[1] "SETD1A MUTATION ANALYSIS"
[1] 3
  SETD1A MUTATED SETD1A WILD-TYPE 
              15               57 
  SETD1A MUTATED SETD1A WILD-TYPE 
              15               57 
[1] "SEH1L MUTATION ANALYSIS"
[1] 3
  SEH1L MUTATED SEH1L WILD-TYPE 
             16              56 
  SEH1L MUTATED SEH1L WILD-TYPE 
             16              56 
[1] "IRS1 MUTATION ANALYSIS"
[1] 3
  IRS1 MUTATED IRS1 WILD-TYPE 
            12             60 
  IRS1 MUTATED IRS1 WILD-TYPE 
            12             60 
[1] "PLAUR MUTATION ANALYSIS"
[1] 3
  PLAUR MUTATED PLAUR WILD-TYPE 
              5              67 
  PLAUR MUTATED PLAUR WILD-TYPE 
              5              67 
[1] "TERF1 MUTATION ANALYSIS"
[1] 3
  TERF1 MUTATED TERF1 WILD-TYPE 
              5              67 
  TERF1 MUTATED TERF1 WILD-TYPE 
              5              67 
[1] "PDILT MUTATION ANALYSIS"
[1] 3
  PDILT MUTATED PDILT WILD-TYPE 
             10              62 
  PDILT MUTATED PDILT WILD-TYPE 
             10              62 
[1] "CUX2 MUTATION ANALYSIS"
[1] 3
  CUX2 MUTATED CUX2 WILD-TYPE 
            10             62 
  CUX2 MUTATED CUX2 WILD-TYPE 
            10             62 
[1] "KRT73 MUTATION ANALYSIS"
[1] 3
  KRT73 MUTATED KRT73 WILD-TYPE 
              8              64 
  KRT73 MUTATED KRT73 WILD-TYPE 
              8              64 
[1] "TAOK2 MUTATION ANALYSIS"
[1] 3
  TAOK2 MUTATED TAOK2 WILD-TYPE 
             18              54 
  TAOK2 MUTATED TAOK2 WILD-TYPE 
             18              54 
[1] "SORBS2 MUTATION ANALYSIS"
[1] 3
  SORBS2 MUTATED SORBS2 WILD-TYPE 
              15               57 
  SORBS2 MUTATED SORBS2 WILD-TYPE 
              15               57 
[1] "ATG16L2 MUTATION ANALYSIS"
[1] 3
  ATG16L2 MUTATED ATG16L2 WILD-TYPE 
                5                67 
  ATG16L2 MUTATED ATG16L2 WILD-TYPE 
                5                67 
[1] "PTCD1 MUTATION ANALYSIS"
[1] 3
  PTCD1 MUTATED PTCD1 WILD-TYPE 
              8              64 
  PTCD1 MUTATED PTCD1 WILD-TYPE 
              8              64 
[1] "FAM198B MUTATION ANALYSIS"
[1] 3
  FAM198B MUTATED FAM198B WILD-TYPE 
                5                67 
  FAM198B MUTATED FAM198B WILD-TYPE 
                5                67 
[1] "NDEL1 MUTATION ANALYSIS"
[1] 3
  NDEL1 MUTATED NDEL1 WILD-TYPE 
              5              67 
  NDEL1 MUTATED NDEL1 WILD-TYPE 
              5              67 
[1] "NFIL3 MUTATION ANALYSIS"
[1] 3
  NFIL3 MUTATED NFIL3 WILD-TYPE 
              9              63 
  NFIL3 MUTATED NFIL3 WILD-TYPE 
              9              63 
[1] "ATP13A3 MUTATION ANALYSIS"
[1] 3
  ATP13A3 MUTATED ATP13A3 WILD-TYPE 
                9                63 
  ATP13A3 MUTATED ATP13A3 WILD-TYPE 
                9                63 
[1] "IPP MUTATION ANALYSIS"
[1] 3
  IPP MUTATED IPP WILD-TYPE 
           15            57 
  IPP MUTATED IPP WILD-TYPE 
           15            57 
[1] "GAS2L2 MUTATION ANALYSIS"
[1] 3
  GAS2L2 MUTATED GAS2L2 WILD-TYPE 
              20               52 
  GAS2L2 MUTATED GAS2L2 WILD-TYPE 
              20               52 
[1] "XRCC2 MUTATION ANALYSIS"
[1] 3
  XRCC2 MUTATED XRCC2 WILD-TYPE 
              4              68 
  XRCC2 MUTATED XRCC2 WILD-TYPE 
              4              68 
[1] "ZBTB33 MUTATION ANALYSIS"
[1] 3
  ZBTB33 MUTATED ZBTB33 WILD-TYPE 
               3               69 
  ZBTB33 MUTATED ZBTB33 WILD-TYPE 
               3               69 
[1] "PTPRF MUTATION ANALYSIS"
[1] 3
  PTPRF MUTATED PTPRF WILD-TYPE 
             16              56 
  PTPRF MUTATED PTPRF WILD-TYPE 
             16              56 
[1] "UBXN6 MUTATION ANALYSIS"
[1] 3
  UBXN6 MUTATED UBXN6 WILD-TYPE 
              9              63 
  UBXN6 MUTATED UBXN6 WILD-TYPE 
              9              63 
[1] "MEPCE MUTATION ANALYSIS"
[1] 3
  MEPCE MUTATED MEPCE WILD-TYPE 
             15              57 
  MEPCE MUTATED MEPCE WILD-TYPE 
             15              57 
[1] "CRAT MUTATION ANALYSIS"
[1] 3
  CRAT MUTATED CRAT WILD-TYPE 
             6             66 
  CRAT MUTATED CRAT WILD-TYPE 
             6             66 
[1] "MBD3 MUTATION ANALYSIS"
[1] 3
  MBD3 MUTATED MBD3 WILD-TYPE 
            12             60 
  MBD3 MUTATED MBD3 WILD-TYPE 
            12             60 
[1] "ZNF644 MUTATION ANALYSIS"
[1] 3
  ZNF644 MUTATED ZNF644 WILD-TYPE 
               7               65 
  ZNF644 MUTATED ZNF644 WILD-TYPE 
               7               65 
[1] "NAGPA MUTATION ANALYSIS"
[1] 3
  NAGPA MUTATED NAGPA WILD-TYPE 
              6              66 
  NAGPA MUTATED NAGPA WILD-TYPE 
              6              66 
[1] "WWTR1 MUTATION ANALYSIS"
[1] 3
  WWTR1 MUTATED WWTR1 WILD-TYPE 
             10              62 
  WWTR1 MUTATED WWTR1 WILD-TYPE 
             10              62 
[1] "B4GALT2 MUTATION ANALYSIS"
[1] 3
  B4GALT2 MUTATED B4GALT2 WILD-TYPE 
                7                65 
  B4GALT2 MUTATED B4GALT2 WILD-TYPE 
                7                65 
[1] "SGOL2 MUTATION ANALYSIS"
[1] 3
  SGOL2 MUTATED SGOL2 WILD-TYPE 
              7              65 
  SGOL2 MUTATED SGOL2 WILD-TYPE 
              7              65 
[1] "EDC4 MUTATION ANALYSIS"
[1] 3
  EDC4 MUTATED EDC4 WILD-TYPE 
            17             55 
  EDC4 MUTATED EDC4 WILD-TYPE 
            17             55 
[1] "RAB11FIP5 MUTATION ANALYSIS"
[1] 3
  RAB11FIP5 MUTATED RAB11FIP5 WILD-TYPE 
                  7                  65 
  RAB11FIP5 MUTATED RAB11FIP5 WILD-TYPE 
                  7                  65 
[1] "DHRS7B MUTATION ANALYSIS"
[1] 3
  DHRS7B MUTATED DHRS7B WILD-TYPE 
               4               68 
  DHRS7B MUTATED DHRS7B WILD-TYPE 
               4               68 
[1] "PAK1 MUTATION ANALYSIS"
[1] 3
  PAK1 MUTATED PAK1 WILD-TYPE 
             7             65 
  PAK1 MUTATED PAK1 WILD-TYPE 
             7             65 
[1] "FYN MUTATION ANALYSIS"
[1] 3
  FYN MUTATED FYN WILD-TYPE 
            8            64 
  FYN MUTATED FYN WILD-TYPE 
            8            64 
[1] "TMCO1 MUTATION ANALYSIS"
[1] 3
  TMCO1 MUTATED TMCO1 WILD-TYPE 
              9              63 
  TMCO1 MUTATED TMCO1 WILD-TYPE 
              9              63 
[1] "NPNT MUTATION ANALYSIS"
[1] 3
  NPNT MUTATED NPNT WILD-TYPE 
             8             64 
  NPNT MUTATED NPNT WILD-TYPE 
             8             64 
[1] "ERF MUTATION ANALYSIS"
[1] 3
  ERF MUTATED ERF WILD-TYPE 
           15            57 
  ERF MUTATED ERF WILD-TYPE 
           15            57 
[1] "SLC24A1 MUTATION ANALYSIS"
[1] 3
  SLC24A1 MUTATED SLC24A1 WILD-TYPE 
                7                65 
  SLC24A1 MUTATED SLC24A1 WILD-TYPE 
                7                65 
[1] "TULP1 MUTATION ANALYSIS"
[1] 3
  TULP1 MUTATED TULP1 WILD-TYPE 
              8              64 
  TULP1 MUTATED TULP1 WILD-TYPE 
              8              64 
[1] "BMP2K MUTATION ANALYSIS"
[1] 3
  BMP2K MUTATED BMP2K WILD-TYPE 
             13              59 
  BMP2K MUTATED BMP2K WILD-TYPE 
             13              59 
[1] "FADS2 MUTATION ANALYSIS"
[1] 3
  FADS2 MUTATED FADS2 WILD-TYPE 
             11              61 
  FADS2 MUTATED FADS2 WILD-TYPE 
             11              61 
[1] "SMG7 MUTATION ANALYSIS"
[1] 3
  SMG7 MUTATED SMG7 WILD-TYPE 
             5             67 
  SMG7 MUTATED SMG7 WILD-TYPE 
             5             67 
[1] "SLC39A5 MUTATION ANALYSIS"
[1] 3
  SLC39A5 MUTATED SLC39A5 WILD-TYPE 
                9                63 
  SLC39A5 MUTATED SLC39A5 WILD-TYPE 
                9                63 
[1] "MYH10 MUTATION ANALYSIS"
[1] 3
  MYH10 MUTATED MYH10 WILD-TYPE 
             20              52 
  MYH10 MUTATED MYH10 WILD-TYPE 
             20              52 
[1] "WASF3 MUTATION ANALYSIS"
[1] 3
  WASF3 MUTATED WASF3 WILD-TYPE 
             16              56 
  WASF3 MUTATED WASF3 WILD-TYPE 
             16              56 
[1] "GPR25 MUTATION ANALYSIS"
[1] 3
  GPR25 MUTATED GPR25 WILD-TYPE 
             11              61 
  GPR25 MUTATED GPR25 WILD-TYPE 
             11              61 
[1] "NFAT5 MUTATION ANALYSIS"
[1] 3
  NFAT5 MUTATED NFAT5 WILD-TYPE 
             17              55 
  NFAT5 MUTATED NFAT5 WILD-TYPE 
             17              55 
[1] "FGF10 MUTATION ANALYSIS"
[1] 3
  FGF10 MUTATED FGF10 WILD-TYPE 
             11              61 
  FGF10 MUTATED FGF10 WILD-TYPE 
             11              61 
[1] "C19ORF55 MUTATION ANALYSIS"
[1] 3
  C19ORF55 MUTATED C19ORF55 WILD-TYPE 
                15                 57 
  C19ORF55 MUTATED C19ORF55 WILD-TYPE 
                15                 57 
[1] "SLC4A3 MUTATION ANALYSIS"
[1] 3
  SLC4A3 MUTATED SLC4A3 WILD-TYPE 
              10               62 
  SLC4A3 MUTATED SLC4A3 WILD-TYPE 
              10               62 
[1] "CEL MUTATION ANALYSIS"
[1] 3
  CEL MUTATED CEL WILD-TYPE 
            7            65 
  CEL MUTATED CEL WILD-TYPE 
            7            65 
[1] "APOBEC4 MUTATION ANALYSIS"
[1] 3
  APOBEC4 MUTATED APOBEC4 WILD-TYPE 
                9                63 
  APOBEC4 MUTATED APOBEC4 WILD-TYPE 
                9                63 
[1] "MED15 MUTATION ANALYSIS"
[1] 3
  MED15 MUTATED MED15 WILD-TYPE 
             22              50 
  MED15 MUTATED MED15 WILD-TYPE 
             22              50 
[1] "MAML3 MUTATION ANALYSIS"
[1] 3
  MAML3 MUTATED MAML3 WILD-TYPE 
             12              60 
  MAML3 MUTATED MAML3 WILD-TYPE 
             12              60 
[1] "SULT1C3 MUTATION ANALYSIS"
[1] 3
  SULT1C3 MUTATED SULT1C3 WILD-TYPE 
                4                68 
  SULT1C3 MUTATED SULT1C3 WILD-TYPE 
                4                68 
[1] "CCR3 MUTATION ANALYSIS"
[1] 3
  CCR3 MUTATED CCR3 WILD-TYPE 
             8             64 
  CCR3 MUTATED CCR3 WILD-TYPE 
             8             64 
[1] "CLCC1 MUTATION ANALYSIS"
[1] 3
  CLCC1 MUTATED CLCC1 WILD-TYPE 
              5              67 
  CLCC1 MUTATED CLCC1 WILD-TYPE 
              5              67 
[1] "PABPC1 MUTATION ANALYSIS"
[1] 3
  PABPC1 MUTATED PABPC1 WILD-TYPE 
              13               59 
  PABPC1 MUTATED PABPC1 WILD-TYPE 
              13               59 
[1] "CCDC103 MUTATION ANALYSIS"
[1] 3
  CCDC103 MUTATED CCDC103 WILD-TYPE 
                5                67 
  CCDC103 MUTATED CCDC103 WILD-TYPE 
                5                67 
[1] "CHGA MUTATION ANALYSIS"
[1] 3
  CHGA MUTATED CHGA WILD-TYPE 
            10             62 
  CHGA MUTATED CHGA WILD-TYPE 
            10             62 
[1] "KDM2A MUTATION ANALYSIS"
[1] 3
  KDM2A MUTATED KDM2A WILD-TYPE 
              9              63 
  KDM2A MUTATED KDM2A WILD-TYPE 
              9              63 
[1] "OLIG3 MUTATION ANALYSIS"
[1] 3
  OLIG3 MUTATED OLIG3 WILD-TYPE 
             10              62 
  OLIG3 MUTATED OLIG3 WILD-TYPE 
             10              62 
[1] "FOXP2 MUTATION ANALYSIS"
[1] 3
  FOXP2 MUTATED FOXP2 WILD-TYPE 
             18              54 
  FOXP2 MUTATED FOXP2 WILD-TYPE 
             18              54 
[1] "MAGEA10 MUTATION ANALYSIS"
[1] 3
  MAGEA10 MUTATED MAGEA10 WILD-TYPE 
               11                61 
  MAGEA10 MUTATED MAGEA10 WILD-TYPE 
               11                61 
[1] "EGR1 MUTATION ANALYSIS"
[1] 3
  EGR1 MUTATED EGR1 WILD-TYPE 
            14             58 
  EGR1 MUTATED EGR1 WILD-TYPE 
            14             58 
[1] "PRDM8 MUTATION ANALYSIS"
[1] 3
  PRDM8 MUTATED PRDM8 WILD-TYPE 
             20              52 
  PRDM8 MUTATED PRDM8 WILD-TYPE 
             20              52 
[1] "PIAS4 MUTATION ANALYSIS"
[1] 3
  PIAS4 MUTATED PIAS4 WILD-TYPE 
              3              69 
  PIAS4 MUTATED PIAS4 WILD-TYPE 
              3              69 
[1] "TEX2 MUTATION ANALYSIS"
[1] 3
  TEX2 MUTATED TEX2 WILD-TYPE 
             9             63 
  TEX2 MUTATED TEX2 WILD-TYPE 
             9             63 
[1] "ARHGAP18 MUTATION ANALYSIS"
[1] 3
  ARHGAP18 MUTATED ARHGAP18 WILD-TYPE 
                 9                 63 
  ARHGAP18 MUTATED ARHGAP18 WILD-TYPE 
                 9                 63 
[1] "TMEM175 MUTATION ANALYSIS"
[1] 3
  TMEM175 MUTATED TMEM175 WILD-TYPE 
               10                62 
  TMEM175 MUTATED TMEM175 WILD-TYPE 
               10                62 
[1] "CDKN2A MUTATION ANALYSIS"
[1] 3
  CDKN2A MUTATED CDKN2A WILD-TYPE 
              16               56 
  CDKN2A MUTATED CDKN2A WILD-TYPE 
              16               56 
[1] "CBR3 MUTATION ANALYSIS"
[1] 3
  CBR3 MUTATED CBR3 WILD-TYPE 
             4             68 
  CBR3 MUTATED CBR3 WILD-TYPE 
             4             68 
[1] "TOX4 MUTATION ANALYSIS"
[1] 3
  TOX4 MUTATED TOX4 WILD-TYPE 
             9             63 
  TOX4 MUTATED TOX4 WILD-TYPE 
             9             63 
[1] "OR10A2 MUTATION ANALYSIS"
[1] 3
  OR10A2 MUTATED OR10A2 WILD-TYPE 
              13               59 
  OR10A2 MUTATED OR10A2 WILD-TYPE 
              13               59 
[1] "OR10A7 MUTATION ANALYSIS"
[1] 3
  OR10A7 MUTATED OR10A7 WILD-TYPE 
              24               48 
  OR10A7 MUTATED OR10A7 WILD-TYPE 
              24               48 
[1] "FAM63B MUTATION ANALYSIS"
[1] 3
  FAM63B MUTATED FAM63B WILD-TYPE 
              10               62 
  FAM63B MUTATED FAM63B WILD-TYPE 
              10               62 
[1] "RNF168 MUTATION ANALYSIS"
[1] 3
  RNF168 MUTATED RNF168 WILD-TYPE 
               6               66 
  RNF168 MUTATED RNF168 WILD-TYPE 
               6               66 
[1] "POP5 MUTATION ANALYSIS"
[1] 3
  POP5 MUTATED POP5 WILD-TYPE 
            10             62 
  POP5 MUTATED POP5 WILD-TYPE 
            10             62 
[1] "NF2 MUTATION ANALYSIS"
[1] 3
  NF2 MUTATED NF2 WILD-TYPE 
            5            67 
  NF2 MUTATED NF2 WILD-TYPE 
            5            67 
[1] "RIOK1 MUTATION ANALYSIS"
[1] 3
  RIOK1 MUTATED RIOK1 WILD-TYPE 
             14              58 
  RIOK1 MUTATED RIOK1 WILD-TYPE 
             14              58 
[1] "OR6C65 MUTATION ANALYSIS"
[1] 3
  OR6C65 MUTATED OR6C65 WILD-TYPE 
               5               67 
  OR6C65 MUTATED OR6C65 WILD-TYPE 
               5               67 
[1] "ZBTB24 MUTATION ANALYSIS"
[1] 3
  ZBTB24 MUTATED ZBTB24 WILD-TYPE 
               5               67 
  ZBTB24 MUTATED ZBTB24 WILD-TYPE 
               5               67 
[1] "SYT15 MUTATION ANALYSIS"
[1] 3
  SYT15 MUTATED SYT15 WILD-TYPE 
             10              62 
  SYT15 MUTATED SYT15 WILD-TYPE 
             10              62 
[1] "SLC22A9 MUTATION ANALYSIS"
[1] 3
  SLC22A9 MUTATED SLC22A9 WILD-TYPE 
               10                62 
  SLC22A9 MUTATED SLC22A9 WILD-TYPE 
               10                62 
[1] "SRP14 MUTATION ANALYSIS"
[1] 3
  SRP14 MUTATED SRP14 WILD-TYPE 
             13              59 
  SRP14 MUTATED SRP14 WILD-TYPE 
             13              59 
[1] "DIAPH3 MUTATION ANALYSIS"
[1] 3
  DIAPH3 MUTATED DIAPH3 WILD-TYPE 
               9               63 
  DIAPH3 MUTATED DIAPH3 WILD-TYPE 
               9               63 
[1] "WRN MUTATION ANALYSIS"
[1] 3
  WRN MUTATED WRN WILD-TYPE 
           11            61 
  WRN MUTATED WRN WILD-TYPE 
           11            61 
[1] "PDZD2 MUTATION ANALYSIS"
[1] 3
  PDZD2 MUTATED PDZD2 WILD-TYPE 
             17              55 
  PDZD2 MUTATED PDZD2 WILD-TYPE 
             17              55 
[1] "AARS2 MUTATION ANALYSIS"
[1] 3
  AARS2 MUTATED AARS2 WILD-TYPE 
             11              61 
  AARS2 MUTATED AARS2 WILD-TYPE 
             11              61 
[1] "SHPRH MUTATION ANALYSIS"
[1] 3
  SHPRH MUTATED SHPRH WILD-TYPE 
              9              63 
  SHPRH MUTATED SHPRH WILD-TYPE 
              9              63 
[1] "ZNF337 MUTATION ANALYSIS"
[1] 3
  ZNF337 MUTATED ZNF337 WILD-TYPE 
              10               62 
  ZNF337 MUTATED ZNF337 WILD-TYPE 
              10               62 
[1] "NGEF MUTATION ANALYSIS"
[1] 3
  NGEF MUTATED NGEF WILD-TYPE 
             6             66 
  NGEF MUTATED NGEF WILD-TYPE 
             6             66 
[1] "BCL2L1 MUTATION ANALYSIS"
[1] 3
  BCL2L1 MUTATED BCL2L1 WILD-TYPE 
               6               66 
  BCL2L1 MUTATED BCL2L1 WILD-TYPE 
               6               66 
[1] "RBM15B MUTATION ANALYSIS"
[1] 3
  RBM15B MUTATED RBM15B WILD-TYPE 
               8               64 
  RBM15B MUTATED RBM15B WILD-TYPE 
               8               64 
[1] "THBS4 MUTATION ANALYSIS"
[1] 3
  THBS4 MUTATED THBS4 WILD-TYPE 
             18              54 
  THBS4 MUTATED THBS4 WILD-TYPE 
             18              54 
[1] "PVRL1 MUTATION ANALYSIS"
[1] 3
  PVRL1 MUTATED PVRL1 WILD-TYPE 
             12              60 
  PVRL1 MUTATED PVRL1 WILD-TYPE 
             12              60 
[1] "PVRL2 MUTATION ANALYSIS"
[1] 3
  PVRL2 MUTATED PVRL2 WILD-TYPE 
             10              62 
  PVRL2 MUTATED PVRL2 WILD-TYPE 
             10              62 
[1] "TNNI3K MUTATION ANALYSIS"
[1] 3
  TNNI3K MUTATED TNNI3K WILD-TYPE 
              12               60 
  TNNI3K MUTATED TNNI3K WILD-TYPE 
              12               60 
[1] "NEDD4L MUTATION ANALYSIS"
[1] 3
  NEDD4L MUTATED NEDD4L WILD-TYPE 
              10               62 
  NEDD4L MUTATED NEDD4L WILD-TYPE 
              10               62 
[1] "IRX4 MUTATION ANALYSIS"
[1] 3
  IRX4 MUTATED IRX4 WILD-TYPE 
            10             62 
  IRX4 MUTATED IRX4 WILD-TYPE 
            10             62 
[1] "GTF3C3 MUTATION ANALYSIS"
[1] 3
  GTF3C3 MUTATED GTF3C3 WILD-TYPE 
               4               68 
  GTF3C3 MUTATED GTF3C3 WILD-TYPE 
               4               68 
[1] "NAP1L3 MUTATION ANALYSIS"
[1] 3
  NAP1L3 MUTATED NAP1L3 WILD-TYPE 
               6               66 
  NAP1L3 MUTATED NAP1L3 WILD-TYPE 
               6               66 
[1] "TMEM40 MUTATION ANALYSIS"
[1] 3
  TMEM40 MUTATED TMEM40 WILD-TYPE 
              13               59 
  TMEM40 MUTATED TMEM40 WILD-TYPE 
              13               59 
[1] "MED9 MUTATION ANALYSIS"
[1] 3
  MED9 MUTATED MED9 WILD-TYPE 
            15             57 
  MED9 MUTATED MED9 WILD-TYPE 
            15             57 
[1] "ZNF608 MUTATION ANALYSIS"
[1] 3
  ZNF608 MUTATED ZNF608 WILD-TYPE 
              13               59 
  ZNF608 MUTATED ZNF608 WILD-TYPE 
              13               59 
[1] "DPAGT1 MUTATION ANALYSIS"
[1] 3
  DPAGT1 MUTATED DPAGT1 WILD-TYPE 
               4               68 
  DPAGT1 MUTATED DPAGT1 WILD-TYPE 
               4               68 
[1] "IFNGR2 MUTATION ANALYSIS"
[1] 3
  IFNGR2 MUTATED IFNGR2 WILD-TYPE 
               7               65 
  IFNGR2 MUTATED IFNGR2 WILD-TYPE 
               7               65 
[1] "PPARGC1B MUTATION ANALYSIS"
[1] 3
  PPARGC1B MUTATED PPARGC1B WILD-TYPE 
                13                 59 
  PPARGC1B MUTATED PPARGC1B WILD-TYPE 
                13                 59 
[1] "DHX57 MUTATION ANALYSIS"
[1] 3
  DHX57 MUTATED DHX57 WILD-TYPE 
             15              57 
  DHX57 MUTATED DHX57 WILD-TYPE 
             15              57 
[1] "TDRD6 MUTATION ANALYSIS"
[1] 3
  TDRD6 MUTATED TDRD6 WILD-TYPE 
             11              61 
  TDRD6 MUTATED TDRD6 WILD-TYPE 
             11              61 
[1] "KRAS MUTATION ANALYSIS"
[1] 3
  KRAS MUTATED KRAS WILD-TYPE 
            48             24 
  KRAS MUTATED KRAS WILD-TYPE 
            48             24 
[1] "CIR1 MUTATION ANALYSIS"
[1] 3
  CIR1 MUTATED CIR1 WILD-TYPE 
            12             60 
  CIR1 MUTATED CIR1 WILD-TYPE 
            12             60 
[1] "ZMYM5 MUTATION ANALYSIS"
[1] 3
  ZMYM5 MUTATED ZMYM5 WILD-TYPE 
              8              64 
  ZMYM5 MUTATED ZMYM5 WILD-TYPE 
              8              64 
[1] "TMEM184A MUTATION ANALYSIS"
[1] 3
  TMEM184A MUTATED TMEM184A WILD-TYPE 
                15                 57 
  TMEM184A MUTATED TMEM184A WILD-TYPE 
                15                 57 
[1] "BHLHB9 MUTATION ANALYSIS"
[1] 3
  BHLHB9 MUTATED BHLHB9 WILD-TYPE 
               8               64 
  BHLHB9 MUTATED BHLHB9 WILD-TYPE 
               8               64 
[1] "MAP3K7 MUTATION ANALYSIS"
[1] 3
  MAP3K7 MUTATED MAP3K7 WILD-TYPE 
               9               63 
  MAP3K7 MUTATED MAP3K7 WILD-TYPE 
               9               63 
[1] "EME2 MUTATION ANALYSIS"
[1] 3
  EME2 MUTATED EME2 WILD-TYPE 
             9             63 
  EME2 MUTATED EME2 WILD-TYPE 
             9             63 
[1] "TP53 MUTATION ANALYSIS"
[1] 3
  TP53 MUTATED TP53 WILD-TYPE 
            45             27 
  TP53 MUTATED TP53 WILD-TYPE 
            45             27 
[1] "ALS2CR11 MUTATION ANALYSIS"
[1] 3
  ALS2CR11 MUTATED ALS2CR11 WILD-TYPE 
                13                 59 
  ALS2CR11 MUTATED ALS2CR11 WILD-TYPE 
                13                 59 
[1] "SALL1 MUTATION ANALYSIS"
[1] 3
  SALL1 MUTATED SALL1 WILD-TYPE 
             12              60 
  SALL1 MUTATED SALL1 WILD-TYPE 
             12              60 
[1] "ZMIZ1 MUTATION ANALYSIS"
[1] 3
  ZMIZ1 MUTATED ZMIZ1 WILD-TYPE 
             16              56 
  ZMIZ1 MUTATED ZMIZ1 WILD-TYPE 
             16              56 
[1] "ESCO2 MUTATION ANALYSIS"
[1] 3
  ESCO2 MUTATED ESCO2 WILD-TYPE 
              8              64 
  ESCO2 MUTATED ESCO2 WILD-TYPE 
              8              64 
[1] "CTRL MUTATION ANALYSIS"
[1] 3
  CTRL MUTATED CTRL WILD-TYPE 
             6             66 
  CTRL MUTATED CTRL WILD-TYPE 
             6             66 
[1] "OTUD4 MUTATION ANALYSIS"
[1] 3
  OTUD4 MUTATED OTUD4 WILD-TYPE 
             19              53 
  OTUD4 MUTATED OTUD4 WILD-TYPE 
             19              53 
[1] "QRICH1 MUTATION ANALYSIS"
[1] 3
  QRICH1 MUTATED QRICH1 WILD-TYPE 
              15               57 
  QRICH1 MUTATED QRICH1 WILD-TYPE 
              15               57 
[1] "RAD17 MUTATION ANALYSIS"
[1] 3
  RAD17 MUTATED RAD17 WILD-TYPE 
              4              68 
  RAD17 MUTATED RAD17 WILD-TYPE 
              4              68 
[1] "COTL1 MUTATION ANALYSIS"
[1] 3
  COTL1 MUTATED COTL1 WILD-TYPE 
              4              68 
  COTL1 MUTATED COTL1 WILD-TYPE 
              4              68 
[1] "CDH3 MUTATION ANALYSIS"
[1] 3
  CDH3 MUTATED CDH3 WILD-TYPE 
             8             64 
  CDH3 MUTATED CDH3 WILD-TYPE 
             8             64 
[1] "ECSIT MUTATION ANALYSIS"
[1] 3
  ECSIT MUTATED ECSIT WILD-TYPE 
              6              66 
  ECSIT MUTATED ECSIT WILD-TYPE 
              6              66 
[1] "PHF14 MUTATION ANALYSIS"
[1] 3
  PHF14 MUTATED PHF14 WILD-TYPE 
              7              65 
  PHF14 MUTATED PHF14 WILD-TYPE 
              7              65 
[1] "PHF13 MUTATION ANALYSIS"
[1] 3
  PHF13 MUTATED PHF13 WILD-TYPE 
             12              60 
  PHF13 MUTATED PHF13 WILD-TYPE 
             12              60 
[1] "SLC6A9 MUTATION ANALYSIS"
[1] 3
  SLC6A9 MUTATED SLC6A9 WILD-TYPE 
               7               65 
  SLC6A9 MUTATED SLC6A9 WILD-TYPE 
               7               65 
[1] "STK19 MUTATION ANALYSIS"
[1] 3
  STK19 MUTATED STK19 WILD-TYPE 
              5              67 
  STK19 MUTATED STK19 WILD-TYPE 
              5              67 
[1] "PANK2 MUTATION ANALYSIS"
[1] 3
  PANK2 MUTATED PANK2 WILD-TYPE 
              8              64 
  PANK2 MUTATED PANK2 WILD-TYPE 
              8              64 
[1] "ST6GALNAC5 MUTATION ANALYSIS"
[1] 3
  ST6GALNAC5 MUTATED ST6GALNAC5 WILD-TYPE 
                  12                   60 
  ST6GALNAC5 MUTATED ST6GALNAC5 WILD-TYPE 
                  12                   60 
[1] "PTPLAD2 MUTATION ANALYSIS"
[1] 3
  PTPLAD2 MUTATED PTPLAD2 WILD-TYPE 
                5                67 
  PTPLAD2 MUTATED PTPLAD2 WILD-TYPE 
                5                67 
[1] "TNFSF9 MUTATION ANALYSIS"
[1] 3
  TNFSF9 MUTATED TNFSF9 WILD-TYPE 
              17               55 
  TNFSF9 MUTATED TNFSF9 WILD-TYPE 
              17               55 
[1] "OTOF MUTATION ANALYSIS"
[1] 3
  OTOF MUTATED OTOF WILD-TYPE 
            12             60 
  OTOF MUTATED OTOF WILD-TYPE 
            12             60 
[1] "ABCC2 MUTATION ANALYSIS"
[1] 3
  ABCC2 MUTATED ABCC2 WILD-TYPE 
             12              60 
  ABCC2 MUTATED ABCC2 WILD-TYPE 
             12              60 
[1] "MST1 MUTATION ANALYSIS"
[1] 3
  MST1 MUTATED MST1 WILD-TYPE 
            11             61 
  MST1 MUTATED MST1 WILD-TYPE 
            11             61 
[1] "SCD MUTATION ANALYSIS"
[1] 3
  SCD MUTATED SCD WILD-TYPE 
            8            64 
  SCD MUTATED SCD WILD-TYPE 
            8            64 
[1] "FOXJ2 MUTATION ANALYSIS"
[1] 3
  FOXJ2 MUTATED FOXJ2 WILD-TYPE 
              9              63 
  FOXJ2 MUTATED FOXJ2 WILD-TYPE 
              9              63 
[1] "CCDC28B MUTATION ANALYSIS"
[1] 3
  CCDC28B MUTATED CCDC28B WILD-TYPE 
               11                61 
  CCDC28B MUTATED CCDC28B WILD-TYPE 
               11                61 
[1] "AJAP1 MUTATION ANALYSIS"
[1] 3
  AJAP1 MUTATED AJAP1 WILD-TYPE 
             12              60 
  AJAP1 MUTATED AJAP1 WILD-TYPE 
             12              60 
[1] "CXXC4 MUTATION ANALYSIS"
[1] 3
  CXXC4 MUTATED CXXC4 WILD-TYPE 
              9              63 
  CXXC4 MUTATED CXXC4 WILD-TYPE 
              9              63 
[1] "NAPSA MUTATION ANALYSIS"
[1] 3
  NAPSA MUTATED NAPSA WILD-TYPE 
              8              64 
  NAPSA MUTATED NAPSA WILD-TYPE 
              8              64 
[1] "SMAD4 MUTATION ANALYSIS"
[1] 3
  SMAD4 MUTATED SMAD4 WILD-TYPE 
             14              58 
  SMAD4 MUTATED SMAD4 WILD-TYPE 
             14              58 
[1] "DDX55 MUTATION ANALYSIS"
[1] 3
  DDX55 MUTATED DDX55 WILD-TYPE 
             17              55 
  DDX55 MUTATED DDX55 WILD-TYPE 
             17              55 
[1] "TMEM41A MUTATION ANALYSIS"
[1] 3
  TMEM41A MUTATED TMEM41A WILD-TYPE 
                6                66 
  TMEM41A MUTATED TMEM41A WILD-TYPE 
                6                66 
[1] "CYP20A1 MUTATION ANALYSIS"
[1] 3
  CYP20A1 MUTATED CYP20A1 WILD-TYPE 
                8                64 
  CYP20A1 MUTATED CYP20A1 WILD-TYPE 
                8                64 
[1] "SLC34A2 MUTATION ANALYSIS"
[1] 3
  SLC34A2 MUTATED SLC34A2 WILD-TYPE 
               10                62 
  SLC34A2 MUTATED SLC34A2 WILD-TYPE 
               10                62 
[1] "ZNF207 MUTATION ANALYSIS"
[1] 3
  ZNF207 MUTATED ZNF207 WILD-TYPE 
               7               65 
  ZNF207 MUTATED ZNF207 WILD-TYPE 
               7               65 
[1] "SLITRK5 MUTATION ANALYSIS"
[1] 3
  SLITRK5 MUTATED SLITRK5 WILD-TYPE 
                9                63 
  SLITRK5 MUTATED SLITRK5 WILD-TYPE 
                9                63 
[1] "MMRN1 MUTATION ANALYSIS"
[1] 3
  MMRN1 MUTATED MMRN1 WILD-TYPE 
             10              62 
  MMRN1 MUTATED MMRN1 WILD-TYPE 
             10              62 
[1] "MAP7D3 MUTATION ANALYSIS"
[1] 3
  MAP7D3 MUTATED MAP7D3 WILD-TYPE 
              11               61 
  MAP7D3 MUTATED MAP7D3 WILD-TYPE 
              11               61 
[1] "BTNL8 MUTATION ANALYSIS"
[1] 3
  BTNL8 MUTATED BTNL8 WILD-TYPE 
             11              61 
  BTNL8 MUTATED BTNL8 WILD-TYPE 
             11              61 
[1] "SERTAD1 MUTATION ANALYSIS"
[1] 3
  SERTAD1 MUTATED SERTAD1 WILD-TYPE 
                7                65 
  SERTAD1 MUTATED SERTAD1 WILD-TYPE 
                7                65 
[1] "SYT2 MUTATION ANALYSIS"
[1] 3
  SYT2 MUTATED SYT2 WILD-TYPE 
             9             63 
  SYT2 MUTATED SYT2 WILD-TYPE 
             9             63 
[1] "ZFP36 MUTATION ANALYSIS"
[1] 3
  ZFP36 MUTATED ZFP36 WILD-TYPE 
              7              65 
  ZFP36 MUTATED ZFP36 WILD-TYPE 
              7              65 
[1] "UHRF1BP1 MUTATION ANALYSIS"
[1] 3
  UHRF1BP1 MUTATED UHRF1BP1 WILD-TYPE 
                 9                 63 
  UHRF1BP1 MUTATED UHRF1BP1 WILD-TYPE 
                 9                 63 
[1] "TTK MUTATION ANALYSIS"
[1] 3
  TTK MUTATED TTK WILD-TYPE 
            9            63 
  TTK MUTATED TTK WILD-TYPE 
            9            63 
[1] "CCDC135 MUTATION ANALYSIS"
[1] 3
  CCDC135 MUTATED CCDC135 WILD-TYPE 
                5                67 
  CCDC135 MUTATED CCDC135 WILD-TYPE 
                5                67 
[1] "TNFRSF9 MUTATION ANALYSIS"
[1] 3
  TNFRSF9 MUTATED TNFRSF9 WILD-TYPE 
                6                66 
  TNFRSF9 MUTATED TNFRSF9 WILD-TYPE 
                6                66 
[1] "UBL4A MUTATION ANALYSIS"
[1] 3
  UBL4A MUTATED UBL4A WILD-TYPE 
              5              67 
  UBL4A MUTATED UBL4A WILD-TYPE 
              5              67 
[1] "PURB MUTATION ANALYSIS"
[1] 3
  PURB MUTATED PURB WILD-TYPE 
             6             66 
  PURB MUTATED PURB WILD-TYPE 
             6             66 
[1] "GABBR1 MUTATION ANALYSIS"
[1] 3
  GABBR1 MUTATED GABBR1 WILD-TYPE 
               9               63 
  GABBR1 MUTATED GABBR1 WILD-TYPE 
               9               63 
[1] "ADAM30 MUTATION ANALYSIS"
[1] 3
  ADAM30 MUTATED ADAM30 WILD-TYPE 
               7               65 
  ADAM30 MUTATED ADAM30 WILD-TYPE 
               7               65 
[1] "NR4A3 MUTATION ANALYSIS"
[1] 3
  NR4A3 MUTATED NR4A3 WILD-TYPE 
              5              67 
  NR4A3 MUTATED NR4A3 WILD-TYPE 
              5              67 
[1] "MAMSTR MUTATION ANALYSIS"
[1] 3
  MAMSTR MUTATED MAMSTR WILD-TYPE 
               3               69 
  MAMSTR MUTATED MAMSTR WILD-TYPE 
               3               69 
[1] "ZC3H7B MUTATION ANALYSIS"
[1] 3
  ZC3H7B MUTATED ZC3H7B WILD-TYPE 
               8               64 
  ZC3H7B MUTATED ZC3H7B WILD-TYPE 
               8               64 
[1] "IFFO1 MUTATION ANALYSIS"
[1] 3
  IFFO1 MUTATED IFFO1 WILD-TYPE 
              7              65 
  IFFO1 MUTATED IFFO1 WILD-TYPE 
              7              65 
[1] "C6ORF165 MUTATION ANALYSIS"
[1] 3
  C6ORF165 MUTATED C6ORF165 WILD-TYPE 
                 7                 65 
  C6ORF165 MUTATED C6ORF165 WILD-TYPE 
                 7                 65 
[1] "RBM33 MUTATION ANALYSIS"
[1] 3
  RBM33 MUTATED RBM33 WILD-TYPE 
              7              65 
  RBM33 MUTATED RBM33 WILD-TYPE 
              7              65 
[1] "OSBPL1A MUTATION ANALYSIS"
[1] 3
  OSBPL1A MUTATED OSBPL1A WILD-TYPE 
                6                66 
  OSBPL1A MUTATED OSBPL1A WILD-TYPE 
                6                66 
[1] "PPP1R10 MUTATION ANALYSIS"
[1] 3
  PPP1R10 MUTATED PPP1R10 WILD-TYPE 
               10                62 
  PPP1R10 MUTATED PPP1R10 WILD-TYPE 
               10                62 
[1] "TIMM50 MUTATION ANALYSIS"
[1] 3
  TIMM50 MUTATED TIMM50 WILD-TYPE 
               7               65 
  TIMM50 MUTATED TIMM50 WILD-TYPE 
               7               65 
[1] "TMED10 MUTATION ANALYSIS"
[1] 3
  TMED10 MUTATED TMED10 WILD-TYPE 
               4               68 
  TMED10 MUTATED TMED10 WILD-TYPE 
               4               68 
[1] "YIPF2 MUTATION ANALYSIS"
[1] 3
  YIPF2 MUTATED YIPF2 WILD-TYPE 
              7              65 
  YIPF2 MUTATED YIPF2 WILD-TYPE 
              7              65 
[1] "TSC22D1 MUTATION ANALYSIS"
[1] 3
  TSC22D1 MUTATED TSC22D1 WILD-TYPE 
                8                64 
  TSC22D1 MUTATED TSC22D1 WILD-TYPE 
                8                64 
[1] "ARFGAP3 MUTATION ANALYSIS"
[1] 3
  ARFGAP3 MUTATED ARFGAP3 WILD-TYPE 
                6                66 
  ARFGAP3 MUTATED ARFGAP3 WILD-TYPE 
                6                66 
[1] "CRYGA MUTATION ANALYSIS"
[1] 3
  CRYGA MUTATED CRYGA WILD-TYPE 
              4              68 
  CRYGA MUTATED CRYGA WILD-TYPE 
              4              68 
[1] "PUM2 MUTATION ANALYSIS"
[1] 3
  PUM2 MUTATED PUM2 WILD-TYPE 
             8             64 
  PUM2 MUTATED PUM2 WILD-TYPE 
             8             64 
[1] "YTHDF1 MUTATION ANALYSIS"
[1] 3
  YTHDF1 MUTATED YTHDF1 WILD-TYPE 
               8               64 
  YTHDF1 MUTATED YTHDF1 WILD-TYPE 
               8               64 
[1] "PLAU MUTATION ANALYSIS"
[1] 3
  PLAU MUTATED PLAU WILD-TYPE 
             7             65 
  PLAU MUTATED PLAU WILD-TYPE 
             7             65 
[1] "SOS1 MUTATION ANALYSIS"
[1] 3
  SOS1 MUTATED SOS1 WILD-TYPE 
             9             63 
  SOS1 MUTATED SOS1 WILD-TYPE 
             9             63 
[1] "DPYS MUTATION ANALYSIS"
[1] 3
  DPYS MUTATED DPYS WILD-TYPE 
             8             64 
  DPYS MUTATED DPYS WILD-TYPE 
             8             64 
[1] "CPLX3 MUTATION ANALYSIS"
[1] 3
  CPLX3 MUTATED CPLX3 WILD-TYPE 
              4              68 
  CPLX3 MUTATED CPLX3 WILD-TYPE 
              4              68 
[1] "RUNX2 MUTATION ANALYSIS"
[1] 3
  RUNX2 MUTATED RUNX2 WILD-TYPE 
             10              62 
  RUNX2 MUTATED RUNX2 WILD-TYPE 
             10              62 
[1] "BCL7C MUTATION ANALYSIS"
[1] 3
  BCL7C MUTATED BCL7C WILD-TYPE 
              4              68 
  BCL7C MUTATED BCL7C WILD-TYPE 
              4              68 
[1] "RGS22 MUTATION ANALYSIS"
[1] 3
  RGS22 MUTATED RGS22 WILD-TYPE 
             10              62 
  RGS22 MUTATED RGS22 WILD-TYPE 
             10              62 
[1] "ERCC3 MUTATION ANALYSIS"
[1] 3
  ERCC3 MUTATED ERCC3 WILD-TYPE 
              8              64 
  ERCC3 MUTATED ERCC3 WILD-TYPE 
              8              64 
[1] "SYNCRIP MUTATION ANALYSIS"
[1] 3
  SYNCRIP MUTATED SYNCRIP WILD-TYPE 
                6                66 
  SYNCRIP MUTATED SYNCRIP WILD-TYPE 
                6                66 
[1] "AHDC1 MUTATION ANALYSIS"
[1] 3
  AHDC1 MUTATED AHDC1 WILD-TYPE 
              8              64 
  AHDC1 MUTATED AHDC1 WILD-TYPE 
              8              64 
[1] "CLOCK MUTATION ANALYSIS"
[1] 3
  CLOCK MUTATED CLOCK WILD-TYPE 
              9              63 
  CLOCK MUTATED CLOCK WILD-TYPE 
              9              63 
[1] "LRIG1 MUTATION ANALYSIS"
[1] 3
  LRIG1 MUTATED LRIG1 WILD-TYPE 
             10              62 
  LRIG1 MUTATED LRIG1 WILD-TYPE 
             10              62 
[1] "SEPT10 MUTATION ANALYSIS"
[1] 3
  SEPT10 MUTATED SEPT10 WILD-TYPE 
               7               65 
  SEPT10 MUTATED SEPT10 WILD-TYPE 
               7               65 
[1] "BRD9 MUTATION ANALYSIS"
[1] 3
  BRD9 MUTATED BRD9 WILD-TYPE 
             7             65 
  BRD9 MUTATED BRD9 WILD-TYPE 
             7             65 
[1] "HMGB3 MUTATION ANALYSIS"
[1] 3
  HMGB3 MUTATED HMGB3 WILD-TYPE 
              3              69 
  HMGB3 MUTATED HMGB3 WILD-TYPE 
              3              69 
[1] "PAMR1 MUTATION ANALYSIS"
[1] 3
  PAMR1 MUTATED PAMR1 WILD-TYPE 
              7              65 
  PAMR1 MUTATED PAMR1 WILD-TYPE 
              7              65 
[1] "ZNF704 MUTATION ANALYSIS"
[1] 3
  ZNF704 MUTATED ZNF704 WILD-TYPE 
               4               68 
  ZNF704 MUTATED ZNF704 WILD-TYPE 
               4               68 
[1] "SYNGAP1 MUTATION ANALYSIS"
[1] 3
  SYNGAP1 MUTATED SYNGAP1 WILD-TYPE 
                6                66 
  SYNGAP1 MUTATED SYNGAP1 WILD-TYPE 
                6                66 
[1] "FKBP15 MUTATION ANALYSIS"
[1] 3
  FKBP15 MUTATED FKBP15 WILD-TYPE 
               7               65 
  FKBP15 MUTATED FKBP15 WILD-TYPE 
               7               65 
[1] "CAMTA1 MUTATION ANALYSIS"
[1] 3
  CAMTA1 MUTATED CAMTA1 WILD-TYPE 
               9               63 
  CAMTA1 MUTATED CAMTA1 WILD-TYPE 
               9               63 
[1] "OXR1 MUTATION ANALYSIS"
[1] 3
  OXR1 MUTATED OXR1 WILD-TYPE 
             5             67 
  OXR1 MUTATED OXR1 WILD-TYPE 
             5             67 
[1] "ZNF184 MUTATION ANALYSIS"
[1] 3
  ZNF184 MUTATED ZNF184 WILD-TYPE 
               9               63 
  ZNF184 MUTATED ZNF184 WILD-TYPE 
               9               63 
[1] "ACBD3 MUTATION ANALYSIS"
[1] 3
  ACBD3 MUTATED ACBD3 WILD-TYPE 
              4              68 
  ACBD3 MUTATED ACBD3 WILD-TYPE 
              4              68 
[1] "OR10Z1 MUTATION ANALYSIS"
[1] 3
  OR10Z1 MUTATED OR10Z1 WILD-TYPE 
               6               66 
  OR10Z1 MUTATED OR10Z1 WILD-TYPE 
               6               66 
[1] "BEGAIN MUTATION ANALYSIS"
[1] 3
  BEGAIN MUTATED BEGAIN WILD-TYPE 
               6               66 
  BEGAIN MUTATED BEGAIN WILD-TYPE 
               6               66 
[1] "TNKS2 MUTATION ANALYSIS"
[1] 3
  TNKS2 MUTATED TNKS2 WILD-TYPE 
              6              66 
  TNKS2 MUTATED TNKS2 WILD-TYPE 
              6              66 
[1] "SNIP1 MUTATION ANALYSIS"
[1] 3
  SNIP1 MUTATED SNIP1 WILD-TYPE 
              6              66 
  SNIP1 MUTATED SNIP1 WILD-TYPE 
              6              66 
[1] "FAM134A MUTATION ANALYSIS"
[1] 3
  FAM134A MUTATED FAM134A WILD-TYPE 
                4                68 
  FAM134A MUTATED FAM134A WILD-TYPE 
                4                68 
[1] "RTKN2 MUTATION ANALYSIS"
[1] 3
  RTKN2 MUTATED RTKN2 WILD-TYPE 
              6              66 
  RTKN2 MUTATED RTKN2 WILD-TYPE 
              6              66 
[1] "OR2T33 MUTATION ANALYSIS"
[1] 3
  OR2T33 MUTATED OR2T33 WILD-TYPE 
               5               67 
  OR2T33 MUTATED OR2T33 WILD-TYPE 
               5               67 
[1] "OR5A1 MUTATION ANALYSIS"
[1] 3
  OR5A1 MUTATED OR5A1 WILD-TYPE 
              8              64 
  OR5A1 MUTATED OR5A1 WILD-TYPE 
              8              64 
[1] "RBMXL1 MUTATION ANALYSIS"
[1] 3
  RBMXL1 MUTATED RBMXL1 WILD-TYPE 
               4               68 
  RBMXL1 MUTATED RBMXL1 WILD-TYPE 
               4               68 
[1] "CD93 MUTATION ANALYSIS"
[1] 3
  CD93 MUTATED CD93 WILD-TYPE 
             7             65 
  CD93 MUTATED CD93 WILD-TYPE 
             7             65 
[1] "HVCN1 MUTATION ANALYSIS"
[1] 3
  HVCN1 MUTATED HVCN1 WILD-TYPE 
              4              68 
  HVCN1 MUTATED HVCN1 WILD-TYPE 
              4              68 
[1] "OTX1 MUTATION ANALYSIS"
[1] 3
  OTX1 MUTATED OTX1 WILD-TYPE 
             7             65 
  OTX1 MUTATED OTX1 WILD-TYPE 
             7             65 
[1] "PRKCH MUTATION ANALYSIS"
[1] 3
  PRKCH MUTATED PRKCH WILD-TYPE 
              5              67 
  PRKCH MUTATED PRKCH WILD-TYPE 
              5              67 
[1] "LIMD1 MUTATION ANALYSIS"
[1] 3
  LIMD1 MUTATED LIMD1 WILD-TYPE 
              7              65 
  LIMD1 MUTATED LIMD1 WILD-TYPE 
              7              65 
[1] "C15ORF52 MUTATION ANALYSIS"
[1] 3
  C15ORF52 MUTATED C15ORF52 WILD-TYPE 
                 4                 68 
  C15ORF52 MUTATED C15ORF52 WILD-TYPE 
                 4                 68 
[1] "ZNF552 MUTATION ANALYSIS"
[1] 3
  ZNF552 MUTATED ZNF552 WILD-TYPE 
               9               63 
  ZNF552 MUTATED ZNF552 WILD-TYPE 
               9               63 
[1] "TFDP2 MUTATION ANALYSIS"
[1] 3
  TFDP2 MUTATED TFDP2 WILD-TYPE 
              3              69 
  TFDP2 MUTATED TFDP2 WILD-TYPE 
              3              69 
[1] "CACNA1D MUTATION ANALYSIS"
[1] 3
  CACNA1D MUTATED CACNA1D WILD-TYPE 
                9                63 
  CACNA1D MUTATED CACNA1D WILD-TYPE 
                9                63 
[1] "SEC31A MUTATION ANALYSIS"
[1] 3
  SEC31A MUTATED SEC31A WILD-TYPE 
              10               62 
  SEC31A MUTATED SEC31A WILD-TYPE 
              10               62 
[1] "RETN MUTATION ANALYSIS"
[1] 3
  RETN MUTATED RETN WILD-TYPE 
             3             69 
  RETN MUTATED RETN WILD-TYPE 
             3             69 
[1] "PRKCD MUTATION ANALYSIS"
[1] 3
  PRKCD MUTATED PRKCD WILD-TYPE 
              4              68 
  PRKCD MUTATED PRKCD WILD-TYPE 
              4              68 
[1] "ZNF326 MUTATION ANALYSIS"
[1] 3
  ZNF326 MUTATED ZNF326 WILD-TYPE 
               5               67 
  ZNF326 MUTATED ZNF326 WILD-TYPE 
               5               67 
[1] "MED12L MUTATION ANALYSIS"
[1] 3
  MED12L MUTATED MED12L WILD-TYPE 
              12               60 
  MED12L MUTATED MED12L WILD-TYPE 
              12               60 
[1] "ATP2B3 MUTATION ANALYSIS"
[1] 3
  ATP2B3 MUTATED ATP2B3 WILD-TYPE 
               6               66 
  ATP2B3 MUTATED ATP2B3 WILD-TYPE 
               6               66 
[1] "FNDC7 MUTATION ANALYSIS"
[1] 3
  FNDC7 MUTATED FNDC7 WILD-TYPE 
              5              67 
  FNDC7 MUTATED FNDC7 WILD-TYPE 
              5              67 
[1] "RBM45 MUTATION ANALYSIS"
[1] 3
  RBM45 MUTATED RBM45 WILD-TYPE 
              6              66 
  RBM45 MUTATED RBM45 WILD-TYPE 
              6              66 
[1] "INF2 MUTATION ANALYSIS"
[1] 3
  INF2 MUTATED INF2 WILD-TYPE 
             8             64 
  INF2 MUTATED INF2 WILD-TYPE 
             8             64 
[1] "PARP3 MUTATION ANALYSIS"
[1] 3
  PARP3 MUTATED PARP3 WILD-TYPE 
              4              68 
  PARP3 MUTATED PARP3 WILD-TYPE 
              4              68 
[1] "CDO1 MUTATION ANALYSIS"
[1] 3
  CDO1 MUTATED CDO1 WILD-TYPE 
             5             67 
  CDO1 MUTATED CDO1 WILD-TYPE 
             5             67 
[1] "FAM98A MUTATION ANALYSIS"
[1] 3
  FAM98A MUTATED FAM98A WILD-TYPE 
               3               69 
  FAM98A MUTATED FAM98A WILD-TYPE 
               3               69 
[1] "AAMP MUTATION ANALYSIS"
[1] 3
  AAMP MUTATED AAMP WILD-TYPE 
             3             69 
  AAMP MUTATED AAMP WILD-TYPE 
             3             69 
[1] "KBTBD4 MUTATION ANALYSIS"
[1] 3
  KBTBD4 MUTATED KBTBD4 WILD-TYPE 
               4               68 
  KBTBD4 MUTATED KBTBD4 WILD-TYPE 
               4               68 
[1] "KCTD19 MUTATION ANALYSIS"
[1] 3
  KCTD19 MUTATED KCTD19 WILD-TYPE 
               5               67 
  KCTD19 MUTATED KCTD19 WILD-TYPE 
               5               67 
[1] "EPS8L3 MUTATION ANALYSIS"
[1] 3
  EPS8L3 MUTATED EPS8L3 WILD-TYPE 
               4               68 
  EPS8L3 MUTATED EPS8L3 WILD-TYPE 
               4               68 
[1] "HMX2 MUTATION ANALYSIS"
[1] 3
  HMX2 MUTATED HMX2 WILD-TYPE 
             5             67 
  HMX2 MUTATED HMX2 WILD-TYPE 
             5             67 
[1] "C19ORF47 MUTATION ANALYSIS"
[1] 3
  C19ORF47 MUTATED C19ORF47 WILD-TYPE 
                 4                 68 
  C19ORF47 MUTATED C19ORF47 WILD-TYPE 
                 4                 68 
[1] "NARG2 MUTATION ANALYSIS"
[1] 3
  NARG2 MUTATED NARG2 WILD-TYPE 
             11              61 
  NARG2 MUTATED NARG2 WILD-TYPE 
             11              61 
[1] "ZC3H4 MUTATION ANALYSIS"
[1] 3
  ZC3H4 MUTATED ZC3H4 WILD-TYPE 
              7              65 
  ZC3H4 MUTATED ZC3H4 WILD-TYPE 
              7              65 
[1] "TIGD7 MUTATION ANALYSIS"
[1] 3
  TIGD7 MUTATED TIGD7 WILD-TYPE 
              3              69 
  TIGD7 MUTATED TIGD7 WILD-TYPE 
              3              69 
[1] "TATDN2 MUTATION ANALYSIS"
[1] 3
  TATDN2 MUTATED TATDN2 WILD-TYPE 
               7               65 
  TATDN2 MUTATED TATDN2 WILD-TYPE 
               7               65 
[1] "GSTA1 MUTATION ANALYSIS"
[1] 3
  GSTA1 MUTATED GSTA1 WILD-TYPE 
              5              67 
  GSTA1 MUTATED GSTA1 WILD-TYPE 
              5              67 
[1] "PDZD7 MUTATION ANALYSIS"
[1] 3
  PDZD7 MUTATED PDZD7 WILD-TYPE 
              5              67 
  PDZD7 MUTATED PDZD7 WILD-TYPE 
              5              67 
[1] "SPRY4 MUTATION ANALYSIS"
[1] 3
  SPRY4 MUTATED SPRY4 WILD-TYPE 
              3              69 
  SPRY4 MUTATED SPRY4 WILD-TYPE 
              3              69 
[1] "ZMYND19 MUTATION ANALYSIS"
[1] 3
  ZMYND19 MUTATED ZMYND19 WILD-TYPE 
                4                68 
  ZMYND19 MUTATED ZMYND19 WILD-TYPE 
                4                68 
[1] "SULT1B1 MUTATION ANALYSIS"
[1] 3
  SULT1B1 MUTATED SULT1B1 WILD-TYPE 
                3                69 
  SULT1B1 MUTATED SULT1B1 WILD-TYPE 
                3                69 
[1] "WDR88 MUTATION ANALYSIS"
[1] 3
  WDR88 MUTATED WDR88 WILD-TYPE 
              5              67 
  WDR88 MUTATED WDR88 WILD-TYPE 
              5              67 
[1] "PSME4 MUTATION ANALYSIS"
[1] 3
  PSME4 MUTATED PSME4 WILD-TYPE 
              6              66 
  PSME4 MUTATED PSME4 WILD-TYPE 
              6              66 
[1] "TMC7 MUTATION ANALYSIS"
[1] 3
  TMC7 MUTATED TMC7 WILD-TYPE 
             3             69 
  TMC7 MUTATED TMC7 WILD-TYPE 
             3             69 
[1] "FTH1 MUTATION ANALYSIS"
[1] 3
  FTH1 MUTATED FTH1 WILD-TYPE 
             3             69 
  FTH1 MUTATED FTH1 WILD-TYPE 
             3             69 
[1] "MRPS5 MUTATION ANALYSIS"
[1] 3
  MRPS5 MUTATED MRPS5 WILD-TYPE 
              6              66 
  MRPS5 MUTATED MRPS5 WILD-TYPE 
              6              66 
[1] "RAI1 MUTATION ANALYSIS"
[1] 3
  RAI1 MUTATED RAI1 WILD-TYPE 
             8             64 
  RAI1 MUTATED RAI1 WILD-TYPE 
             8             64 
[1] "RUNX1T1 MUTATION ANALYSIS"
[1] 3
  RUNX1T1 MUTATED RUNX1T1 WILD-TYPE 
                7                65 
  RUNX1T1 MUTATED RUNX1T1 WILD-TYPE 
                7                65 
[1] "CCDC130 MUTATION ANALYSIS"
[1] 3
  CCDC130 MUTATED CCDC130 WILD-TYPE 
                5                67 
  CCDC130 MUTATED CCDC130 WILD-TYPE 
                5                67 
[1] "ADAL MUTATION ANALYSIS"
[1] 3
  ADAL MUTATED ADAL WILD-TYPE 
             3             69 
  ADAL MUTATED ADAL WILD-TYPE 
             3             69 
[1] "TWISTNB MUTATION ANALYSIS"
[1] 3
  TWISTNB MUTATED TWISTNB WILD-TYPE 
                5                67 
  TWISTNB MUTATED TWISTNB WILD-TYPE 
                5                67 
[1] "CSNK1G3 MUTATION ANALYSIS"
[1] 3
  CSNK1G3 MUTATED CSNK1G3 WILD-TYPE 
                5                67 
  CSNK1G3 MUTATED CSNK1G3 WILD-TYPE 
                5                67 
[1] "PLCZ1 MUTATION ANALYSIS"
[1] 3
  PLCZ1 MUTATED PLCZ1 WILD-TYPE 
              4              68 
  PLCZ1 MUTATED PLCZ1 WILD-TYPE 
              4              68 
[1] "CDC25A MUTATION ANALYSIS"
[1] 3
  CDC25A MUTATED CDC25A WILD-TYPE 
               3               69 
  CDC25A MUTATED CDC25A WILD-TYPE 
               3               69 
[1] "UNC5D MUTATION ANALYSIS"
[1] 3
  UNC5D MUTATED UNC5D WILD-TYPE 
              7              65 
  UNC5D MUTATED UNC5D WILD-TYPE 
              7              65 
[1] "CPSF3 MUTATION ANALYSIS"
[1] 3
  CPSF3 MUTATED CPSF3 WILD-TYPE 
              3              69 
  CPSF3 MUTATED CPSF3 WILD-TYPE 
              3              69 
[1] "TSFM MUTATION ANALYSIS"
[1] 3
  TSFM MUTATED TSFM WILD-TYPE 
             4             68 
  TSFM MUTATED TSFM WILD-TYPE 
             4             68 
[1] "APOA1BP MUTATION ANALYSIS"
[1] 3
  APOA1BP MUTATED APOA1BP WILD-TYPE 
                5                67 
  APOA1BP MUTATED APOA1BP WILD-TYPE 
                5                67 
[1] "DDX10 MUTATION ANALYSIS"
[1] 3
  DDX10 MUTATED DDX10 WILD-TYPE 
              6              66 
  DDX10 MUTATED DDX10 WILD-TYPE 
              6              66 
[1] "USP4 MUTATION ANALYSIS"
[1] 3
  USP4 MUTATED USP4 WILD-TYPE 
             9             63 
  USP4 MUTATED USP4 WILD-TYPE 
             9             63 
[1] "SLC7A9 MUTATION ANALYSIS"
[1] 3
  SLC7A9 MUTATED SLC7A9 WILD-TYPE 
               6               66 
  SLC7A9 MUTATED SLC7A9 WILD-TYPE 
               6               66 
[1] "CDH10 MUTATION ANALYSIS"
[1] 3
  CDH10 MUTATED CDH10 WILD-TYPE 
             11              61 
  CDH10 MUTATED CDH10 WILD-TYPE 
             11              61 
[1] "SNRNP35 MUTATION ANALYSIS"
[1] 3
  SNRNP35 MUTATED SNRNP35 WILD-TYPE 
                4                68 
  SNRNP35 MUTATED SNRNP35 WILD-TYPE 
                4                68 
[1] "SPINT1 MUTATION ANALYSIS"
[1] 3
  SPINT1 MUTATED SPINT1 WILD-TYPE 
               5               67 
  SPINT1 MUTATED SPINT1 WILD-TYPE 
               5               67 
[1] "SMARCA2 MUTATION ANALYSIS"
[1] 3
  SMARCA2 MUTATED SMARCA2 WILD-TYPE 
                6                66 
  SMARCA2 MUTATED SMARCA2 WILD-TYPE 
                6                66 
[1] "RHOU MUTATION ANALYSIS"
[1] 3
  RHOU MUTATED RHOU WILD-TYPE 
             3             69 
  RHOU MUTATED RHOU WILD-TYPE 
             3             69 
[1] "NOLC1 MUTATION ANALYSIS"
[1] 3
  NOLC1 MUTATED NOLC1 WILD-TYPE 
              3              69 
  NOLC1 MUTATED NOLC1 WILD-TYPE 
              3              69 
[1] "CDK5 MUTATION ANALYSIS"
[1] 3
  CDK5 MUTATED CDK5 WILD-TYPE 
             3             69 
  CDK5 MUTATED CDK5 WILD-TYPE 
             3             69 
[1] "HIRA MUTATION ANALYSIS"
[1] 3
  HIRA MUTATED HIRA WILD-TYPE 
             7             65 
  HIRA MUTATED HIRA WILD-TYPE 
             7             65 
[1] "GIGYF2 MUTATION ANALYSIS"
[1] 3
  GIGYF2 MUTATED GIGYF2 WILD-TYPE 
               7               65 
  GIGYF2 MUTATED GIGYF2 WILD-TYPE 
               7               65 
[1] "KCNA4 MUTATION ANALYSIS"
[1] 3
  KCNA4 MUTATED KCNA4 WILD-TYPE 
              9              63 
  KCNA4 MUTATED KCNA4 WILD-TYPE 
              9              63 
[1] "COL22A1 MUTATION ANALYSIS"
[1] 3
  COL22A1 MUTATED COL22A1 WILD-TYPE 
                8                64 
  COL22A1 MUTATED COL22A1 WILD-TYPE 
                8                64 
[1] "RBM43 MUTATION ANALYSIS"
[1] 3
  RBM43 MUTATED RBM43 WILD-TYPE 
              4              68 
  RBM43 MUTATED RBM43 WILD-TYPE 
              4              68 
[1] "ZNF880 MUTATION ANALYSIS"
[1] 3
  ZNF880 MUTATED ZNF880 WILD-TYPE 
               4               68 
  ZNF880 MUTATED ZNF880 WILD-TYPE 
               4               68 
[1] "ACE MUTATION ANALYSIS"
[1] 3
  ACE MUTATED ACE WILD-TYPE 
            6            66 
  ACE MUTATED ACE WILD-TYPE 
            6            66 
[1] "CDK8 MUTATION ANALYSIS"
[1] 3
  CDK8 MUTATED CDK8 WILD-TYPE 
             5             67 
  CDK8 MUTATED CDK8 WILD-TYPE 
             5             67 
[1] "MGA MUTATION ANALYSIS"
[1] 3
  MGA MUTATED MGA WILD-TYPE 
            9            63 
  MGA MUTATED MGA WILD-TYPE 
            9            63 
[1] "NUCB1 MUTATION ANALYSIS"
[1] 3
  NUCB1 MUTATED NUCB1 WILD-TYPE 
              5              67 
  NUCB1 MUTATED NUCB1 WILD-TYPE 
              5              67 
[1] "PPIL6 MUTATION ANALYSIS"
[1] 3
  PPIL6 MUTATED PPIL6 WILD-TYPE 
              4              68 
  PPIL6 MUTATED PPIL6 WILD-TYPE 
              4              68 
[1] "FKBP7 MUTATION ANALYSIS"
[1] 3
  FKBP7 MUTATED FKBP7 WILD-TYPE 
              5              67 
  FKBP7 MUTATED FKBP7 WILD-TYPE 
              5              67 
[1] "NTAN1 MUTATION ANALYSIS"
[1] 3
  NTAN1 MUTATED NTAN1 WILD-TYPE 
              3              69 
  NTAN1 MUTATED NTAN1 WILD-TYPE 
              3              69 
[1] "PPP1R12C MUTATION ANALYSIS"
[1] 3
  PPP1R12C MUTATED PPP1R12C WILD-TYPE 
                 6                 66 
  PPP1R12C MUTATED PPP1R12C WILD-TYPE 
                 6                 66 
[1] "RAI2 MUTATION ANALYSIS"
[1] 3
  RAI2 MUTATED RAI2 WILD-TYPE 
             3             69 
  RAI2 MUTATED RAI2 WILD-TYPE 
             3             69 
[1] "SLAIN1 MUTATION ANALYSIS"
[1] 3
  SLAIN1 MUTATED SLAIN1 WILD-TYPE 
               3               69 
  SLAIN1 MUTATED SLAIN1 WILD-TYPE 
               3               69 
[1] "ACVR2A MUTATION ANALYSIS"
[1] 3
  ACVR2A MUTATED ACVR2A WILD-TYPE 
               5               67 
  ACVR2A MUTATED ACVR2A WILD-TYPE 
               5               67 
[1] "NTF3 MUTATION ANALYSIS"
[1] 3
  NTF3 MUTATED NTF3 WILD-TYPE 
             6             66 
  NTF3 MUTATED NTF3 WILD-TYPE 
             6             66 
[1] "C9ORF69 MUTATION ANALYSIS"
[1] 3
  C9ORF69 MUTATED C9ORF69 WILD-TYPE 
                4                68 
  C9ORF69 MUTATED C9ORF69 WILD-TYPE 
                4                68 
[1] "KIAA0430 MUTATION ANALYSIS"
[1] 3
  KIAA0430 MUTATED KIAA0430 WILD-TYPE 
                 8                 64 
  KIAA0430 MUTATED KIAA0430 WILD-TYPE 
                 8                 64 
[1] "MED12 MUTATION ANALYSIS"
[1] 3
  MED12 MUTATED MED12 WILD-TYPE 
              6              66 
  MED12 MUTATED MED12 WILD-TYPE 
              6              66 
[1] "WIPF2 MUTATION ANALYSIS"
[1] 3
  WIPF2 MUTATED WIPF2 WILD-TYPE 
              4              68 
  WIPF2 MUTATED WIPF2 WILD-TYPE 
              4              68 
[1] "IKZF5 MUTATION ANALYSIS"
[1] 3
  IKZF5 MUTATED IKZF5 WILD-TYPE 
              3              69 
  IKZF5 MUTATED IKZF5 WILD-TYPE 
              3              69 
[1] "ACIN1 MUTATION ANALYSIS"
[1] 3
  ACIN1 MUTATED ACIN1 WILD-TYPE 
              4              68 
  ACIN1 MUTATED ACIN1 WILD-TYPE 
              4              68 
[1] "LRCH1 MUTATION ANALYSIS"
[1] 3
  LRCH1 MUTATED LRCH1 WILD-TYPE 
              9              63 
  LRCH1 MUTATED LRCH1 WILD-TYPE 
              9              63 
[1] "CNGB1 MUTATION ANALYSIS"
[1] 3
  CNGB1 MUTATED CNGB1 WILD-TYPE 
              6              66 
  CNGB1 MUTATED CNGB1 WILD-TYPE 
              6              66 
[1] "ATP4A MUTATION ANALYSIS"
[1] 3
  ATP4A MUTATED ATP4A WILD-TYPE 
              7              65 
  ATP4A MUTATED ATP4A WILD-TYPE 
              7              65 
[1] "HSD17B7 MUTATION ANALYSIS"
[1] 3
  HSD17B7 MUTATED HSD17B7 WILD-TYPE 
                3                69 
  HSD17B7 MUTATED HSD17B7 WILD-TYPE 
                3                69 
[1] "INTS7 MUTATION ANALYSIS"
[1] 3
  INTS7 MUTATED INTS7 WILD-TYPE 
              8              64 
  INTS7 MUTATED INTS7 WILD-TYPE 
              8              64 
[1] "SCRIB MUTATION ANALYSIS"
[1] 3
  SCRIB MUTATED SCRIB WILD-TYPE 
              6              66 
  SCRIB MUTATED SCRIB WILD-TYPE 
              6              66 
[1] "CYP11B2 MUTATION ANALYSIS"
[1] 3
  CYP11B2 MUTATED CYP11B2 WILD-TYPE 
                4                68 
  CYP11B2 MUTATED CYP11B2 WILD-TYPE 
                4                68 
[1] "BCL3 MUTATION ANALYSIS"
[1] 3
  BCL3 MUTATED BCL3 WILD-TYPE 
             3             69 
  BCL3 MUTATED BCL3 WILD-TYPE 
             3             69 
[1] "PHACTR2 MUTATION ANALYSIS"
[1] 3
  PHACTR2 MUTATED PHACTR2 WILD-TYPE 
                6                66 
  PHACTR2 MUTATED PHACTR2 WILD-TYPE 
                6                66 
[1] "AFF4 MUTATION ANALYSIS"
[1] 3
  AFF4 MUTATED AFF4 WILD-TYPE 
             3             69 
  AFF4 MUTATED AFF4 WILD-TYPE 
             3             69 
[1] "UNC5A MUTATION ANALYSIS"
[1] 3
  UNC5A MUTATED UNC5A WILD-TYPE 
              5              67 
  UNC5A MUTATED UNC5A WILD-TYPE 
              5              67 
[1] "CCDC88A MUTATION ANALYSIS"
[1] 3
  CCDC88A MUTATED CCDC88A WILD-TYPE 
                4                68 
  CCDC88A MUTATED CCDC88A WILD-TYPE 
                4                68 
[1] "NKAP MUTATION ANALYSIS"
[1] 3
  NKAP MUTATED NKAP WILD-TYPE 
             4             68 
  NKAP MUTATED NKAP WILD-TYPE 
             4             68 
[1] "PCOLCE2 MUTATION ANALYSIS"
[1] 3
  PCOLCE2 MUTATED PCOLCE2 WILD-TYPE 
                6                66 
  PCOLCE2 MUTATED PCOLCE2 WILD-TYPE 
                6                66 
[1] "NT5C2 MUTATION ANALYSIS"
[1] 3
  NT5C2 MUTATED NT5C2 WILD-TYPE 
              3              69 
  NT5C2 MUTATED NT5C2 WILD-TYPE 
              3              69 
[1] "CMTM1 MUTATION ANALYSIS"
[1] 3
  CMTM1 MUTATED CMTM1 WILD-TYPE 
              3              69 
  CMTM1 MUTATED CMTM1 WILD-TYPE 
              3              69 
[1] "SPAG9 MUTATION ANALYSIS"
[1] 3
  SPAG9 MUTATED SPAG9 WILD-TYPE 
              7              65 
  SPAG9 MUTATED SPAG9 WILD-TYPE 
              7              65 
[1] "PHTF2 MUTATION ANALYSIS"
[1] 3
  PHTF2 MUTATED PHTF2 WILD-TYPE 
              7              65 
  PHTF2 MUTATED PHTF2 WILD-TYPE 
              7              65 
[1] "HIST1H1B MUTATION ANALYSIS"
[1] 3
  HIST1H1B MUTATED HIST1H1B WILD-TYPE 
                 4                 68 
  HIST1H1B MUTATED HIST1H1B WILD-TYPE 
                 4                 68 
[1] "UTRN MUTATION ANALYSIS"
[1] 3
  UTRN MUTATED UTRN WILD-TYPE 
             5             67 
  UTRN MUTATED UTRN WILD-TYPE 
             5             67 
[1] "MAGEC1 MUTATION ANALYSIS"
[1] 3
  MAGEC1 MUTATED MAGEC1 WILD-TYPE 
              12               60 
  MAGEC1 MUTATED MAGEC1 WILD-TYPE 
              12               60 
[1] "NUDT19 MUTATION ANALYSIS"
[1] 3
  NUDT19 MUTATED NUDT19 WILD-TYPE 
               4               68 
  NUDT19 MUTATED NUDT19 WILD-TYPE 
               4               68 
[1] "DDX60 MUTATION ANALYSIS"
[1] 3
  DDX60 MUTATED DDX60 WILD-TYPE 
             11              61 
  DDX60 MUTATED DDX60 WILD-TYPE 
             11              61 
[1] "SLCO1B3 MUTATION ANALYSIS"
[1] 3
  SLCO1B3 MUTATED SLCO1B3 WILD-TYPE 
                6                66 
  SLCO1B3 MUTATED SLCO1B3 WILD-TYPE 
                6                66 
[1] "INTS6 MUTATION ANALYSIS"
[1] 3
  INTS6 MUTATED INTS6 WILD-TYPE 
              3              69 
  INTS6 MUTATED INTS6 WILD-TYPE 
              3              69 
[1] "AP2A2 MUTATION ANALYSIS"
[1] 3
  AP2A2 MUTATED AP2A2 WILD-TYPE 
              5              67 
  AP2A2 MUTATED AP2A2 WILD-TYPE 
              5              67 
[1] "SMYD5 MUTATION ANALYSIS"
[1] 3
  SMYD5 MUTATED SMYD5 WILD-TYPE 
              5              67 
  SMYD5 MUTATED SMYD5 WILD-TYPE 
              5              67 
[1] "CXORF66 MUTATION ANALYSIS"
[1] 3
  CXORF66 MUTATED CXORF66 WILD-TYPE 
                3                69 
  CXORF66 MUTATED CXORF66 WILD-TYPE 
                3                69 
[1] "NKTR MUTATION ANALYSIS"
[1] 3
  NKTR MUTATED NKTR WILD-TYPE 
             6             66 
  NKTR MUTATED NKTR WILD-TYPE 
             6             66 
[1] "RTEL1 MUTATION ANALYSIS"
[1] 3
  RTEL1 MUTATED RTEL1 WILD-TYPE 
              6              66 
  RTEL1 MUTATED RTEL1 WILD-TYPE 
              6              66 
[1] "BCL9L MUTATION ANALYSIS"
[1] 3
  BCL9L MUTATED BCL9L WILD-TYPE 
              5              67 
  BCL9L MUTATED BCL9L WILD-TYPE 
              5              67 
[1] "DDX5 MUTATION ANALYSIS"
[1] 3
  DDX5 MUTATED DDX5 WILD-TYPE 
             4             68 
  DDX5 MUTATED DDX5 WILD-TYPE 
             4             68 
[1] "PCDHB2 MUTATION ANALYSIS"
[1] 3
  PCDHB2 MUTATED PCDHB2 WILD-TYPE 
               5               67 
  PCDHB2 MUTATED PCDHB2 WILD-TYPE 
               5               67 
[1] "GBP5 MUTATION ANALYSIS"
[1] 3
  GBP5 MUTATED GBP5 WILD-TYPE 
             4             68 
  GBP5 MUTATED GBP5 WILD-TYPE 
             4             68 
[1] "SCYL3 MUTATION ANALYSIS"
[1] 3
  SCYL3 MUTATED SCYL3 WILD-TYPE 
              7              65 
  SCYL3 MUTATED SCYL3 WILD-TYPE 
              7              65 
[1] "RERE MUTATION ANALYSIS"
[1] 3
  RERE MUTATED RERE WILD-TYPE 
             5             67 
  RERE MUTATED RERE WILD-TYPE 
             5             67 
[1] "CDHR5 MUTATION ANALYSIS"
[1] 3
  CDHR5 MUTATED CDHR5 WILD-TYPE 
              7              65 
  CDHR5 MUTATED CDHR5 WILD-TYPE 
              7              65 
[1] "SATB1 MUTATION ANALYSIS"
[1] 3
  SATB1 MUTATED SATB1 WILD-TYPE 
              8              64 
  SATB1 MUTATED SATB1 WILD-TYPE 
              8              64 
[1] "SMCR7 MUTATION ANALYSIS"
[1] 3
  SMCR7 MUTATED SMCR7 WILD-TYPE 
              8              64 
  SMCR7 MUTATED SMCR7 WILD-TYPE 
              8              64 
[1] "ZNF548 MUTATION ANALYSIS"
[1] 3
  ZNF548 MUTATED ZNF548 WILD-TYPE 
               6               66 
  ZNF548 MUTATED ZNF548 WILD-TYPE 
               6               66 
[1] "DHX36 MUTATION ANALYSIS"
[1] 3
  DHX36 MUTATED DHX36 WILD-TYPE 
              8              64 
  DHX36 MUTATED DHX36 WILD-TYPE 
              8              64 
[1] "MMP14 MUTATION ANALYSIS"
[1] 3
  MMP14 MUTATED MMP14 WILD-TYPE 
              6              66 
  MMP14 MUTATED MMP14 WILD-TYPE 
              6              66 
[1] "ZMYND8 MUTATION ANALYSIS"
[1] 3
  ZMYND8 MUTATED ZMYND8 WILD-TYPE 
               7               65 
  ZMYND8 MUTATED ZMYND8 WILD-TYPE 
               7               65 
[1] "TRERF1 MUTATION ANALYSIS"
[1] 3
  TRERF1 MUTATED TRERF1 WILD-TYPE 
               5               67 
  TRERF1 MUTATED TRERF1 WILD-TYPE 
               5               67 
[1] "CYP4F3 MUTATION ANALYSIS"
[1] 3
  CYP4F3 MUTATED CYP4F3 WILD-TYPE 
               3               69 
  CYP4F3 MUTATED CYP4F3 WILD-TYPE 
               3               69 
[1] "SYNPO2L MUTATION ANALYSIS"
[1] 3
  SYNPO2L MUTATED SYNPO2L WILD-TYPE 
                5                67 
  SYNPO2L MUTATED SYNPO2L WILD-TYPE 
                5                67 
[1] "PPP1R12B MUTATION ANALYSIS"
[1] 3
  PPP1R12B MUTATED PPP1R12B WILD-TYPE 
                 4                 68 
  PPP1R12B MUTATED PPP1R12B WILD-TYPE 
                 4                 68 
[1] "ENG MUTATION ANALYSIS"
[1] 3
  ENG MUTATED ENG WILD-TYPE 
            3            69 
  ENG MUTATED ENG WILD-TYPE 
            3            69 
[1] "ZHX3 MUTATION ANALYSIS"
[1] 3
  ZHX3 MUTATED ZHX3 WILD-TYPE 
             6             66 
  ZHX3 MUTATED ZHX3 WILD-TYPE 
             6             66 
[1] "SLCO2A1 MUTATION ANALYSIS"
[1] 3
  SLCO2A1 MUTATED SLCO2A1 WILD-TYPE 
                5                67 
  SLCO2A1 MUTATED SLCO2A1 WILD-TYPE 
                5                67 
[1] "PHRF1 MUTATION ANALYSIS"
[1] 3
  PHRF1 MUTATED PHRF1 WILD-TYPE 
              7              65 
  PHRF1 MUTATED PHRF1 WILD-TYPE 
              7              65 
[1] "PUS7 MUTATION ANALYSIS"
[1] 3
  PUS7 MUTATED PUS7 WILD-TYPE 
             4             68 
  PUS7 MUTATED PUS7 WILD-TYPE 
             4             68 
[1] "FLAD1 MUTATION ANALYSIS"
[1] 3
  FLAD1 MUTATED FLAD1 WILD-TYPE 
              5              67 
  FLAD1 MUTATED FLAD1 WILD-TYPE 
              5              67 
[1] "PDE12 MUTATION ANALYSIS"
[1] 3
  PDE12 MUTATED PDE12 WILD-TYPE 
              3              69 
  PDE12 MUTATED PDE12 WILD-TYPE 
              3              69 
[1] "PNMA3 MUTATION ANALYSIS"
[1] 3
  PNMA3 MUTATED PNMA3 WILD-TYPE 
              4              68 
  PNMA3 MUTATED PNMA3 WILD-TYPE 
              4              68 
[1] "CEP72 MUTATION ANALYSIS"
[1] 3
  CEP72 MUTATED CEP72 WILD-TYPE 
              5              67 
  CEP72 MUTATED CEP72 WILD-TYPE 
              5              67 
[1] "COL5A1 MUTATION ANALYSIS"
[1] 3
  COL5A1 MUTATED COL5A1 WILD-TYPE 
               8               64 
  COL5A1 MUTATED COL5A1 WILD-TYPE 
               8               64 
[1] "HIST1H1A MUTATION ANALYSIS"
[1] 3
  HIST1H1A MUTATED HIST1H1A WILD-TYPE 
                 4                 68 
  HIST1H1A MUTATED HIST1H1A WILD-TYPE 
                 4                 68 
[1] "WHSC1L1 MUTATION ANALYSIS"
[1] 3
  WHSC1L1 MUTATED WHSC1L1 WILD-TYPE 
                5                67 
  WHSC1L1 MUTATED WHSC1L1 WILD-TYPE 
                5                67 
[1] "MTFMT MUTATION ANALYSIS"
[1] 3
  MTFMT MUTATED MTFMT WILD-TYPE 
              3              69 
  MTFMT MUTATED MTFMT WILD-TYPE 
              3              69 
[1] "KIAA2018 MUTATION ANALYSIS"
[1] 3
  KIAA2018 MUTATED KIAA2018 WILD-TYPE 
                 6                 66 
  KIAA2018 MUTATED KIAA2018 WILD-TYPE 
                 6                 66 
[1] "EDN1 MUTATION ANALYSIS"
[1] 3
  EDN1 MUTATED EDN1 WILD-TYPE 
             3             69 
  EDN1 MUTATED EDN1 WILD-TYPE 
             3             69 
[1] "LRRC41 MUTATION ANALYSIS"
[1] 3
  LRRC41 MUTATED LRRC41 WILD-TYPE 
               4               68 
  LRRC41 MUTATED LRRC41 WILD-TYPE 
               4               68 
[1] "EIF5B MUTATION ANALYSIS"
[1] 3
  EIF5B MUTATED EIF5B WILD-TYPE 
              6              66 
  EIF5B MUTATED EIF5B WILD-TYPE 
              6              66 
[1] "AFF3 MUTATION ANALYSIS"
[1] 3
  AFF3 MUTATED AFF3 WILD-TYPE 
            10             62 
  AFF3 MUTATED AFF3 WILD-TYPE 
            10             62 
[1] "MEGF10 MUTATION ANALYSIS"
[1] 3
  MEGF10 MUTATED MEGF10 WILD-TYPE 
               7               65 
  MEGF10 MUTATED MEGF10 WILD-TYPE 
               7               65 
[1] "IFT46 MUTATION ANALYSIS"
[1] 3
  IFT46 MUTATED IFT46 WILD-TYPE 
              6              66 
  IFT46 MUTATED IFT46 WILD-TYPE 
              6              66 
[1] "SRGAP3 MUTATION ANALYSIS"
[1] 3
  SRGAP3 MUTATED SRGAP3 WILD-TYPE 
               5               67 
  SRGAP3 MUTATED SRGAP3 WILD-TYPE 
               5               67 
[1] "TEX15 MUTATION ANALYSIS"
[1] 3
  TEX15 MUTATED TEX15 WILD-TYPE 
              8              64 
  TEX15 MUTATED TEX15 WILD-TYPE 
              8              64 
[1] "OR7C2 MUTATION ANALYSIS"
[1] 3
  OR7C2 MUTATED OR7C2 WILD-TYPE 
              3              69 
  OR7C2 MUTATED OR7C2 WILD-TYPE 
              3              69 
[1] "LMTK2 MUTATION ANALYSIS"
[1] 3
  LMTK2 MUTATED LMTK2 WILD-TYPE 
              5              67 
  LMTK2 MUTATED LMTK2 WILD-TYPE 
              5              67 
[1] "MED23 MUTATION ANALYSIS"
[1] 3
  MED23 MUTATED MED23 WILD-TYPE 
              5              67 
  MED23 MUTATED MED23 WILD-TYPE 
              5              67 
[1] "ITPR2 MUTATION ANALYSIS"
[1] 3
  ITPR2 MUTATED ITPR2 WILD-TYPE 
              7              65 
  ITPR2 MUTATED ITPR2 WILD-TYPE 
              7              65 
[1] "CCNK MUTATION ANALYSIS"
[1] 3
  CCNK MUTATED CCNK WILD-TYPE 
             4             68 
  CCNK MUTATED CCNK WILD-TYPE 
             4             68 
[1] "SLC39A4 MUTATION ANALYSIS"
[1] 3
  SLC39A4 MUTATED SLC39A4 WILD-TYPE 
                4                68 
  SLC39A4 MUTATED SLC39A4 WILD-TYPE 
                4                68 
[1] "TEAD4 MUTATION ANALYSIS"
[1] 3
  TEAD4 MUTATED TEAD4 WILD-TYPE 
              3              69 
  TEAD4 MUTATED TEAD4 WILD-TYPE 
              3              69 
[1] "TDRD10 MUTATION ANALYSIS"
[1] 3
  TDRD10 MUTATED TDRD10 WILD-TYPE 
               3               69 
  TDRD10 MUTATED TDRD10 WILD-TYPE 
               3               69 
[1] "TTF1 MUTATION ANALYSIS"
[1] 3
  TTF1 MUTATED TTF1 WILD-TYPE 
             3             69 
  TTF1 MUTATED TTF1 WILD-TYPE 
             3             69 
[1] "RAB11FIP1 MUTATION ANALYSIS"
[1] 3
  RAB11FIP1 MUTATED RAB11FIP1 WILD-TYPE 
                  5                  67 
  RAB11FIP1 MUTATED RAB11FIP1 WILD-TYPE 
                  5                  67 
[1] "HABP4 MUTATION ANALYSIS"
[1] 3
  HABP4 MUTATED HABP4 WILD-TYPE 
              5              67 
  HABP4 MUTATED HABP4 WILD-TYPE 
              5              67 
[1] "ATXN1 MUTATION ANALYSIS"
[1] 3
  ATXN1 MUTATED ATXN1 WILD-TYPE 
              5              67 
  ATXN1 MUTATED ATXN1 WILD-TYPE 
              5              67 
[1] "PCDHA9 MUTATION ANALYSIS"
[1] 3
  PCDHA9 MUTATED PCDHA9 WILD-TYPE 
               8               64 
  PCDHA9 MUTATED PCDHA9 WILD-TYPE 
               8               64 
[1] "GSN MUTATION ANALYSIS"
[1] 3
  GSN MUTATED GSN WILD-TYPE 
            4            68 
  GSN MUTATED GSN WILD-TYPE 
            4            68 
[1] "AEBP1 MUTATION ANALYSIS"
[1] 3
  AEBP1 MUTATED AEBP1 WILD-TYPE 
              5              67 
  AEBP1 MUTATED AEBP1 WILD-TYPE 
              5              67 
[1] "UNC50 MUTATION ANALYSIS"
[1] 3
  UNC50 MUTATED UNC50 WILD-TYPE 
              3              69 
  UNC50 MUTATED UNC50 WILD-TYPE 
              3              69 
[1] "CPXM2 MUTATION ANALYSIS"
[1] 3
  CPXM2 MUTATED CPXM2 WILD-TYPE 
              4              68 
  CPXM2 MUTATED CPXM2 WILD-TYPE 
              4              68 
[1] "KCND3 MUTATION ANALYSIS"
[1] 3
  KCND3 MUTATED KCND3 WILD-TYPE 
              3              69 
  KCND3 MUTATED KCND3 WILD-TYPE 
              3              69 
[1] "GRM1 MUTATION ANALYSIS"
[1] 3
  GRM1 MUTATED GRM1 WILD-TYPE 
             9             63 
  GRM1 MUTATED GRM1 WILD-TYPE 
             9             63 
[1] "MRPL48 MUTATION ANALYSIS"
[1] 3
  MRPL48 MUTATED MRPL48 WILD-TYPE 
               3               69 
  MRPL48 MUTATED MRPL48 WILD-TYPE 
               3               69 
[1] "EIF4H MUTATION ANALYSIS"
[1] 3
  EIF4H MUTATED EIF4H WILD-TYPE 
              3              69 
  EIF4H MUTATED EIF4H WILD-TYPE 
              3              69 
[1] "ZFHX3 MUTATION ANALYSIS"
[1] 3
  ZFHX3 MUTATED ZFHX3 WILD-TYPE 
             15              57 
  ZFHX3 MUTATED ZFHX3 WILD-TYPE 
             15              57 
[1] "VEZF1 MUTATION ANALYSIS"
[1] 3
  VEZF1 MUTATED VEZF1 WILD-TYPE 
              3              69 
  VEZF1 MUTATED VEZF1 WILD-TYPE 
              3              69 
[1] "CCDC151 MUTATION ANALYSIS"
[1] 3
  CCDC151 MUTATED CCDC151 WILD-TYPE 
                5                67 
  CCDC151 MUTATED CCDC151 WILD-TYPE 
                5                67 
[1] "CR2 MUTATION ANALYSIS"
[1] 3
  CR2 MUTATED CR2 WILD-TYPE 
            6            66 
  CR2 MUTATED CR2 WILD-TYPE 
            6            66 
[1] "YBX2 MUTATION ANALYSIS"
[1] 3
  YBX2 MUTATED YBX2 WILD-TYPE 
             3             69 
  YBX2 MUTATED YBX2 WILD-TYPE 
             3             69 
[1] "CCDC63 MUTATION ANALYSIS"
[1] 3
  CCDC63 MUTATED CCDC63 WILD-TYPE 
               3               69 
  CCDC63 MUTATED CCDC63 WILD-TYPE 
               3               69 
[1] "GPR113 MUTATION ANALYSIS"
[1] 3
  GPR113 MUTATED GPR113 WILD-TYPE 
               5               67 
  GPR113 MUTATED GPR113 WILD-TYPE 
               5               67 
[1] "EPHX1 MUTATION ANALYSIS"
[1] 3
  EPHX1 MUTATED EPHX1 WILD-TYPE 
              4              68 
  EPHX1 MUTATED EPHX1 WILD-TYPE 
              4              68 
[1] "ZNF878 MUTATION ANALYSIS"
[1] 3
  ZNF878 MUTATED ZNF878 WILD-TYPE 
               4               68 
  ZNF878 MUTATED ZNF878 WILD-TYPE 
               4               68 
[1] "KLC3 MUTATION ANALYSIS"
[1] 3
  KLC3 MUTATED KLC3 WILD-TYPE 
             3             69 
  KLC3 MUTATED KLC3 WILD-TYPE 
             3             69 
[1] "PPIG MUTATION ANALYSIS"
[1] 3
  PPIG MUTATED PPIG WILD-TYPE 
             3             69 
  PPIG MUTATED PPIG WILD-TYPE 
             3             69 
[1] "PSMB4 MUTATION ANALYSIS"
[1] 3
  PSMB4 MUTATED PSMB4 WILD-TYPE 
              3              69 
  PSMB4 MUTATED PSMB4 WILD-TYPE 
              3              69 
[1] "AFAP1L2 MUTATION ANALYSIS"
[1] 3
  AFAP1L2 MUTATED AFAP1L2 WILD-TYPE 
                8                64 
  AFAP1L2 MUTATED AFAP1L2 WILD-TYPE 
                8                64 
[1] "RBBP8 MUTATION ANALYSIS"
[1] 3
  RBBP8 MUTATED RBBP8 WILD-TYPE 
              7              65 
  RBBP8 MUTATED RBBP8 WILD-TYPE 
              7              65 
[1] "MAMLD1 MUTATION ANALYSIS"
[1] 3
  MAMLD1 MUTATED MAMLD1 WILD-TYPE 
               7               65 
  MAMLD1 MUTATED MAMLD1 WILD-TYPE 
               7               65 
[1] "FOXN2 MUTATION ANALYSIS"
[1] 3
  FOXN2 MUTATED FOXN2 WILD-TYPE 
              3              69 
  FOXN2 MUTATED FOXN2 WILD-TYPE 
              3              69 
[1] "PRF1 MUTATION ANALYSIS"
[1] 3
  PRF1 MUTATED PRF1 WILD-TYPE 
             6             66 
  PRF1 MUTATED PRF1 WILD-TYPE 
             6             66 
[1] "KIAA0100 MUTATION ANALYSIS"
[1] 3
  KIAA0100 MUTATED KIAA0100 WILD-TYPE 
                 7                 65 
  KIAA0100 MUTATED KIAA0100 WILD-TYPE 
                 7                 65 
[1] "MYO9B MUTATION ANALYSIS"
[1] 3
  MYO9B MUTATED MYO9B WILD-TYPE 
              8              64 
  MYO9B MUTATED MYO9B WILD-TYPE 
              8              64 
[1] "GABRD MUTATION ANALYSIS"
[1] 3
  GABRD MUTATED GABRD WILD-TYPE 
              5              67 
  GABRD MUTATED GABRD WILD-TYPE 
              5              67 
[1] "SLC4A5 MUTATION ANALYSIS"
[1] 3
  SLC4A5 MUTATED SLC4A5 WILD-TYPE 
               9               63 
  SLC4A5 MUTATED SLC4A5 WILD-TYPE 
               9               63 
[1] "XYLT2 MUTATION ANALYSIS"
[1] 3
  XYLT2 MUTATED XYLT2 WILD-TYPE 
              4              68 
  XYLT2 MUTATED XYLT2 WILD-TYPE 
              4              68 
[1] "RIT1 MUTATION ANALYSIS"
[1] 3
  RIT1 MUTATED RIT1 WILD-TYPE 
             3             69 
  RIT1 MUTATED RIT1 WILD-TYPE 
             3             69 
[1] "HSP90AA1 MUTATION ANALYSIS"
[1] 3
  HSP90AA1 MUTATED HSP90AA1 WILD-TYPE 
                 6                 66 
  HSP90AA1 MUTATED HSP90AA1 WILD-TYPE 
                 6                 66 
[1] "STK10 MUTATION ANALYSIS"
[1] 3
  STK10 MUTATED STK10 WILD-TYPE 
              5              67 
  STK10 MUTATED STK10 WILD-TYPE 
              5              67 
[1] "MTMR3 MUTATION ANALYSIS"
[1] 3
  MTMR3 MUTATED MTMR3 WILD-TYPE 
              5              67 
  MTMR3 MUTATED MTMR3 WILD-TYPE 
              5              67 
[1] "CSF1R MUTATION ANALYSIS"
[1] 3
  CSF1R MUTATED CSF1R WILD-TYPE 
              4              68 
  CSF1R MUTATED CSF1R WILD-TYPE 
              4              68 
[1] "RASSF2 MUTATION ANALYSIS"
[1] 3
  RASSF2 MUTATED RASSF2 WILD-TYPE 
               3               69 
  RASSF2 MUTATED RASSF2 WILD-TYPE 
               3               69 
[1] "SV2A MUTATION ANALYSIS"
[1] 3
  SV2A MUTATED SV2A WILD-TYPE 
             3             69 
  SV2A MUTATED SV2A WILD-TYPE 
             3             69 
[1] "GNAS MUTATION ANALYSIS"
[1] 3
  GNAS MUTATED GNAS WILD-TYPE 
             7             65 
  GNAS MUTATED GNAS WILD-TYPE 
             7             65 
[1] "HMMR MUTATION ANALYSIS"
[1] 3
  HMMR MUTATED HMMR WILD-TYPE 
             6             66 
  HMMR MUTATED HMMR WILD-TYPE 
             6             66 
[1] "MBD6 MUTATION ANALYSIS"
[1] 3
  MBD6 MUTATED MBD6 WILD-TYPE 
             4             68 
  MBD6 MUTATED MBD6 WILD-TYPE 
             4             68 
[1] "NDUFAF2 MUTATION ANALYSIS"
[1] 3
  NDUFAF2 MUTATED NDUFAF2 WILD-TYPE 
                4                68 
  NDUFAF2 MUTATED NDUFAF2 WILD-TYPE 
                4                68 
[1] "STAM MUTATION ANALYSIS"
[1] 3
  STAM MUTATED STAM WILD-TYPE 
             4             68 
  STAM MUTATED STAM WILD-TYPE 
             4             68 
[1] "KIAA1407 MUTATION ANALYSIS"
[1] 3
  KIAA1407 MUTATED KIAA1407 WILD-TYPE 
                 3                 69 
  KIAA1407 MUTATED KIAA1407 WILD-TYPE 
                 3                 69 
[1] "PCDH15 MUTATION ANALYSIS"
[1] 3
  PCDH15 MUTATED PCDH15 WILD-TYPE 
               8               64 
  PCDH15 MUTATED PCDH15 WILD-TYPE 
               8               64 
[1] "SEC24D MUTATION ANALYSIS"
[1] 3
  SEC24D MUTATED SEC24D WILD-TYPE 
               5               67 
  SEC24D MUTATED SEC24D WILD-TYPE 
               5               67 
[1] "SH3BP1 MUTATION ANALYSIS"
[1] 3
  SH3BP1 MUTATED SH3BP1 WILD-TYPE 
               4               68 
  SH3BP1 MUTATED SH3BP1 WILD-TYPE 
               4               68 
[1] "IKZF2 MUTATION ANALYSIS"
[1] 3
  IKZF2 MUTATED IKZF2 WILD-TYPE 
              3              69 
  IKZF2 MUTATED IKZF2 WILD-TYPE 
              3              69 
[1] "RARRES3 MUTATION ANALYSIS"
[1] 3
  RARRES3 MUTATED RARRES3 WILD-TYPE 
                3                69 
  RARRES3 MUTATED RARRES3 WILD-TYPE 
                3                69 
[1] "MESDC2 MUTATION ANALYSIS"
[1] 3
  MESDC2 MUTATED MESDC2 WILD-TYPE 
               4               68 
  MESDC2 MUTATED MESDC2 WILD-TYPE 
               4               68 
[1] "CRIPAK MUTATION ANALYSIS"
[1] 3
  CRIPAK MUTATED CRIPAK WILD-TYPE 
               3               69 
  CRIPAK MUTATED CRIPAK WILD-TYPE 
               3               69 
[1] "LILRB5 MUTATION ANALYSIS"
[1] 3
  LILRB5 MUTATED LILRB5 WILD-TYPE 
               7               65 
  LILRB5 MUTATED LILRB5 WILD-TYPE 
               7               65 
[1] "KIAA1967 MUTATION ANALYSIS"
[1] 3
  KIAA1967 MUTATED KIAA1967 WILD-TYPE 
                 4                 68 
  KIAA1967 MUTATED KIAA1967 WILD-TYPE 
                 4                 68 
[1] "UTY MUTATION ANALYSIS"
[1] 3
  UTY MUTATED UTY WILD-TYPE 
            3            69 
  UTY MUTATED UTY WILD-TYPE 
            3            69 
[1] "REC8 MUTATION ANALYSIS"
[1] 3
  REC8 MUTATED REC8 WILD-TYPE 
             4             68 
  REC8 MUTATED REC8 WILD-TYPE 
             4             68 
[1] "PIH1D2 MUTATION ANALYSIS"
[1] 3
  PIH1D2 MUTATED PIH1D2 WILD-TYPE 
               3               69 
  PIH1D2 MUTATED PIH1D2 WILD-TYPE 
               3               69 
[1] "BRAF MUTATION ANALYSIS"
[1] 3
  BRAF MUTATED BRAF WILD-TYPE 
             3             69 
  BRAF MUTATED BRAF WILD-TYPE 
             3             69 
[1] "WDR90 MUTATION ANALYSIS"
[1] 3
  WDR90 MUTATED WDR90 WILD-TYPE 
              5              67 
  WDR90 MUTATED WDR90 WILD-TYPE 
              5              67 
[1] "terrence_modification_tag"
[1] TRUE
[1] "data2feature, selection="
 [1] "YEARSTOBIRTH"                          
 [2] "VITALSTATUS"                           
 [3] "DAYSTODEATH"                           
 [4] "DAYSTOLASTFOLLOWUP"                    
 [5] "PRIMARYSITEOFDESEASE"                  
 [6] "NEOPLASM.DISEASESTAGE"                 
 [7] "PATHOLOGY.T.STAGE"                     
 [8] "PATHOLOGY.N.STAGE"                     
 [9] "PATHOLOGY.M.STAGE"                     
[10] "DCCUPLOADDATE"                         
[11] "GENDER"                                
[12] "DATEOFINITIALPATHOLOGICDIAGNOSIS"      
[13] "RADIATIONTHERAPY"                      
[14] "HISTOLOGICALTYPE"                      
[15] "RADIATIONS.RADIATION.REGIMENINDICATION"
[16] "NUMBERPACKYEARSSMOKED"                 
[17] "YEAROFTOBACCOSMOKINGONSET"             
[18] "COMPLETENESS.OF.RESECTION"             
[19] "NUMBER.OF.LYMPH.NODES"                 
[20] "GLEASON_SCORE"                         
[21] "PSA_VALUE"                             
[22] "DAYS_TO_PSA"                           
[23] "BATCHNUMBER"                           

Input Data has 23 rows and 72 columns.

[1] "Batch" "23"   
[1] "Last Follow UP"
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
          NA          295          360           NA          153          586 
TCGA-FB-A4P5 TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR 
           4          363          385           75            1          166 
TCGA-FZ-5920 TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 
          NA           NA           NA          392          233          396 
TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7920 TCGA-HZ-7922 TCGA-HZ-7923 
         240           28           20           NA            4            8 
TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 
         369          361            8           19           24           21 
TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8636 TCGA-HZ-8637 TCGA-HZ-8638 
          NA           28           16            5           NA           91 
TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A49I TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 
          23           29           NA          194           46          347 
TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7651 TCGA-IB-7652 
          NA           NA           NA           NA           NA          476 
TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 
         851           NA           NA           NA           NA           NA 
TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO 
         488           NA           NA           17          522          329 
TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX 
         300           NA           NA            8           NA          127 
TCGA-OE-A75W TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
         110          247          416           NA           NA           NA 
Variable 1:'AGE':	nDistinctValues=34,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 2:'VITALSTATUS':	nDistinctValues=2,	numeric=TRUE,	binary=TRUE,	exclude=FALSE.
Variable 3:'DAYSTODEATH':	nDistinctValues=29,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 4:'DAYSTOLASTFOLLOWUP':	nDistinctValues=42,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 5:'PRIMARY.SITE.OF.DISEASE':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 6:'NEOPLASM.DISEASESTAGE':	nDistinctValues=6,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 7:'PATHOLOGY.T.STAGE':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'PATHOLOGY.N.STAGE':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 9:'PATHOLOGY.M.STAGE':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 10:'DCCUPLOADDAY':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 11:'GENDER':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 12:'DAYOFINITIALPATHOLOGICDIAGNOSIS':	nDistinctValues=7,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 13:'RADIATION.THERAPY':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 14:'HISTOLOGICAL.TYPE':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 15:'RADIATIONS.RADIATION.REGIMENINDICATION':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 16:'NUMBERPACKYEARSSMOKED':	nDistinctValues=14,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 17:'YEAROFTOBACCOSMOKINGONSET':	nDistinctValues=17,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 18:'COMPLETENESS.OF.RESECTION':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 19:'NUMBER.OF.LYMPH.NODES':	nDistinctValues=13,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 20:'GLEASON_SCORE':	nDistinctValues=0,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 21:'PSA_VALUE':	nDistinctValues=0,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 22:'DAYS_TO_PSA':	nDistinctValues=0,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 23:'BATCH.NUMBER':	nDistinctValues=8,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
[1] "rownames(nsurv.mat)"
 [1] "AGE"                       "NEOPLASM.DISEASESTAGE"    
 [3] "PATHOLOGY.T.STAGE"         "PATHOLOGY.N.STAGE"        
 [5] "PATHOLOGY.M.STAGE"         "GENDER"                   
 [7] "HISTOLOGICAL.TYPE"         "NUMBERPACKYEARSSMOKED"    
 [9] "YEAROFTOBACCOSMOKINGONSET" "COMPLETENESS.OF.RESECTION"
[11] "NUMBER.OF.LYMPH.NODES"    
[1] "TUMOR.?STAGE"
[1] "TUMOR.?GRADE"
[1] "PATHOLOGY.T" "3"          
[1] "PATHOLOGY.N" "4"          
Output Data has 72 columns, 1 survival variables, and 11 non-survival variables.
AGE, nv=34, binary=FALSE, numeric=TRUE
NEOPLASM.DISEASESTAGE, nv=6, binary=FALSE, numeric=FALSE
PATHOLOGY.T.STAGE, nv=4, binary=FALSE, numeric=TRUE
[1] "grepl('PATHOLOGY.T',vnm)"
vv
T1 T2 T3 T4 
 1  5 64  2 
[1] "table(vv)"
vv
T1+T2 T3+T4 
    6    66 
$ClinVariableName
[1] "PATHOLOGY.T.STAGE"

$Table
vv
T1 T2 T3 T4 
 1  5 64  2 

$ClinVariableType
[1] "binary"

$Class0_nSamples
[1] 6

$Class1_nSamples
[1] 66

$Class0_label
[1] "T1+T2"

$Class1_label
[1] "T3+T4"


T1+T2 T3+T4 
    6    66 
PATHOLOGY.N.STAGE, nv=2, binary=FALSE, numeric=TRUE
PATHOLOGY.M.STAGE, nv=3, binary=FALSE, numeric=FALSE
GENDER, nv=2, binary=FALSE, numeric=FALSE
HISTOLOGICAL.TYPE, nv=3, binary=FALSE, numeric=FALSE
NUMBERPACKYEARSSMOKED, nv=14, binary=FALSE, numeric=TRUE
YEAROFTOBACCOSMOKINGONSET, nv=17, binary=FALSE, numeric=TRUE
COMPLETENESS.OF.RESECTION, nv=3, binary=FALSE, numeric=FALSE
NUMBER.OF.LYMPH.NODES, nv=13, binary=FALSE, numeric=TRUE

Clustering(1) Variable = ATRX MUTATION ANALYSIS
D1V1, survival
                sevent
clus2             0  1
  ATRX MUTATED    3  3
  ATRX WILD-TYPE 37 26
  ATRX MUTATED ATRX WILD-TYPE 
             6             63 
  ATRX MUTATED ATRX WILD-TYPE 
             3             26 
$`ATRX MUTATED`
TCGA-F2-A44H TCGA-FB-A4P5 TCGA-HZ-8003 TCGA-HZ-8317 TCGA-IB-7649 TCGA-IB-7897 
       19.27         0.13         0.69         0.53        15.35        15.98 

$`ATRX WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-FB-A4P6 
       10.98         9.70        11.84         7.10         5.03        11.93 
TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR TCGA-FZ-5920 TCGA-FZ-5922 
       12.66         2.47         0.03         5.46         2.01        36.20 
TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7289 TCGA-HZ-7918 
       20.81        12.89         7.66        13.02         7.89         0.92 
TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 
        0.66         0.13         0.26        12.13        11.87         0.26 
TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8636 TCGA-HZ-8638 
        0.62         0.79         3.95         0.92         0.16         2.99 
TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7645 
        0.76         0.95         6.38         1.51        11.41        49.38 
TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7651 TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7886 
        4.77        21.90        19.82        15.65        27.98         4.04 
TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-7893 
        3.62        43.79        15.81        19.66        16.04         3.85 
TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS 
        0.56        17.16        10.82         9.86         7.20        15.12 
TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W TCGA-PZ-A5RE TCGA-Q3-A5QY 
        0.26         1.35         4.18         3.62         8.12        13.68 
TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
       16.80        14.14        18.67 

  ATRX MUTATED ATRX WILD-TYPE 
          0.13           0.03 
  ATRX MUTATED ATRX WILD-TYPE 
         19.27          49.38 
  ATRX MUTATED ATRX WILD-TYPE 
          8.02           7.66 
[1] "0.1 - 19.3 (8.0)" "0.0 - 49.4 (7.7)"
    TCGA-F2-6879     TCGA-F2-6880     TCGA-F2-7273     TCGA-F2-7276 
"ATRX WILD-TYPE" "ATRX WILD-TYPE" "ATRX WILD-TYPE" "ATRX WILD-TYPE" 
    TCGA-F2-A44G     TCGA-F2-A44H     TCGA-FB-A4P5     TCGA-FB-A4P6 
"ATRX WILD-TYPE"   "ATRX MUTATED"   "ATRX MUTATED" "ATRX WILD-TYPE" 
    TCGA-FB-A545     TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-FB-A7DR 
"ATRX WILD-TYPE" "ATRX WILD-TYPE" "ATRX WILD-TYPE" "ATRX WILD-TYPE" 
    TCGA-FZ-5920     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-H6-8124 
"ATRX WILD-TYPE" "ATRX WILD-TYPE" "ATRX WILD-TYPE" "ATRX WILD-TYPE" 
    TCGA-H6-A45N     TCGA-H8-A6C1     TCGA-HZ-7289     TCGA-HZ-7918 
"ATRX WILD-TYPE" "ATRX WILD-TYPE" "ATRX WILD-TYPE" "ATRX WILD-TYPE" 
    TCGA-HZ-7919     TCGA-HZ-7922     TCGA-HZ-7923     TCGA-HZ-7924 
"ATRX WILD-TYPE" "ATRX WILD-TYPE" "ATRX WILD-TYPE" "ATRX WILD-TYPE" 
    TCGA-HZ-7925     TCGA-HZ-7926     TCGA-HZ-8001     TCGA-HZ-8002 
"ATRX WILD-TYPE" "ATRX WILD-TYPE" "ATRX WILD-TYPE" "ATRX WILD-TYPE" 
    TCGA-HZ-8003     TCGA-HZ-8005     TCGA-HZ-8315     TCGA-HZ-8317 
  "ATRX MUTATED" "ATRX WILD-TYPE" "ATRX WILD-TYPE"   "ATRX MUTATED" 
    TCGA-HZ-8636     TCGA-HZ-8638     TCGA-HZ-A49G     TCGA-HZ-A49H 
"ATRX WILD-TYPE" "ATRX WILD-TYPE" "ATRX WILD-TYPE" "ATRX WILD-TYPE" 
    TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-IB-7644     TCGA-IB-7645 
"ATRX WILD-TYPE" "ATRX WILD-TYPE" "ATRX WILD-TYPE" "ATRX WILD-TYPE" 
    TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7651 
"ATRX WILD-TYPE" "ATRX WILD-TYPE"   "ATRX MUTATED" "ATRX WILD-TYPE" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887 
"ATRX WILD-TYPE" "ATRX WILD-TYPE" "ATRX WILD-TYPE" "ATRX WILD-TYPE" 
    TCGA-IB-7888     TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891 
"ATRX WILD-TYPE" "ATRX WILD-TYPE" "ATRX WILD-TYPE" "ATRX WILD-TYPE" 
    TCGA-IB-7893     TCGA-IB-7897     TCGA-IB-8126     TCGA-IB-8127 
"ATRX WILD-TYPE"   "ATRX MUTATED" "ATRX WILD-TYPE" "ATRX WILD-TYPE" 
    TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS 
"ATRX WILD-TYPE" "ATRX WILD-TYPE" "ATRX WILD-TYPE" "ATRX WILD-TYPE" 
    TCGA-IB-A5ST     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
"ATRX WILD-TYPE" "ATRX WILD-TYPE" "ATRX WILD-TYPE" "ATRX WILD-TYPE" 
    TCGA-PZ-A5RE     TCGA-Q3-A5QY     TCGA-US-A779     TCGA-US-A77E 
"ATRX WILD-TYPE" "ATRX WILD-TYPE" "ATRX WILD-TYPE" "ATRX WILD-TYPE" 
    TCGA-US-A77J 
"ATRX WILD-TYPE" 
    TCGA-F2-6879     TCGA-F2-6880     TCGA-F2-7273     TCGA-F2-7276 
"ATRX WILD-TYPE" "ATRX WILD-TYPE" "ATRX WILD-TYPE" "ATRX WILD-TYPE" 
    TCGA-F2-A44G     TCGA-F2-A44H     TCGA-FB-A4P5     TCGA-FB-A4P6 
"ATRX WILD-TYPE"   "ATRX MUTATED"   "ATRX MUTATED" "ATRX WILD-TYPE" 
    TCGA-FB-A545     TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-FB-A7DR 
"ATRX WILD-TYPE" "ATRX WILD-TYPE" "ATRX WILD-TYPE" "ATRX WILD-TYPE" 
    TCGA-FZ-5920     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-H6-8124 
"ATRX WILD-TYPE" "ATRX WILD-TYPE" "ATRX WILD-TYPE" "ATRX WILD-TYPE" 
    TCGA-H6-A45N     TCGA-H8-A6C1     TCGA-HZ-7289     TCGA-HZ-7918 
"ATRX WILD-TYPE" "ATRX WILD-TYPE" "ATRX WILD-TYPE" "ATRX WILD-TYPE" 
    TCGA-HZ-7919     TCGA-HZ-7922     TCGA-HZ-7923     TCGA-HZ-7924 
"ATRX WILD-TYPE" "ATRX WILD-TYPE" "ATRX WILD-TYPE" "ATRX WILD-TYPE" 
    TCGA-HZ-7925     TCGA-HZ-7926     TCGA-HZ-8001     TCGA-HZ-8002 
"ATRX WILD-TYPE" "ATRX WILD-TYPE" "ATRX WILD-TYPE" "ATRX WILD-TYPE" 
    TCGA-HZ-8003     TCGA-HZ-8005     TCGA-HZ-8315     TCGA-HZ-8317 
  "ATRX MUTATED" "ATRX WILD-TYPE" "ATRX WILD-TYPE"   "ATRX MUTATED" 
    TCGA-HZ-8636     TCGA-HZ-8638     TCGA-HZ-A49G     TCGA-HZ-A49H 
"ATRX WILD-TYPE" "ATRX WILD-TYPE" "ATRX WILD-TYPE" "ATRX WILD-TYPE" 
    TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-IB-7644     TCGA-IB-7645 
"ATRX WILD-TYPE" "ATRX WILD-TYPE" "ATRX WILD-TYPE" "ATRX WILD-TYPE" 
    TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7651 
"ATRX WILD-TYPE" "ATRX WILD-TYPE"   "ATRX MUTATED" "ATRX WILD-TYPE" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887 
"ATRX WILD-TYPE" "ATRX WILD-TYPE" "ATRX WILD-TYPE" "ATRX WILD-TYPE" 
    TCGA-IB-7888     TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891 
"ATRX WILD-TYPE" "ATRX WILD-TYPE" "ATRX WILD-TYPE" "ATRX WILD-TYPE" 
    TCGA-IB-7893     TCGA-IB-7897     TCGA-IB-8126     TCGA-IB-8127 
"ATRX WILD-TYPE"   "ATRX MUTATED" "ATRX WILD-TYPE" "ATRX WILD-TYPE" 
    TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS 
"ATRX WILD-TYPE" "ATRX WILD-TYPE" "ATRX WILD-TYPE" "ATRX WILD-TYPE" 
    TCGA-IB-A5ST     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
"ATRX WILD-TYPE" "ATRX WILD-TYPE" "ATRX WILD-TYPE" "ATRX WILD-TYPE" 
    TCGA-PZ-A5RE     TCGA-Q3-A5QY     TCGA-US-A779     TCGA-US-A77E 
"ATRX WILD-TYPE" "ATRX WILD-TYPE" "ATRX WILD-TYPE" "ATRX WILD-TYPE" 
    TCGA-US-A77J 
"ATRX WILD-TYPE" 
    TCGA-F2-6879     TCGA-F2-6880     TCGA-F2-7273     TCGA-F2-7276 
"ATRX WILD-TYPE" "ATRX WILD-TYPE" "ATRX WILD-TYPE" "ATRX WILD-TYPE" 
    TCGA-F2-A44G     TCGA-F2-A44H     TCGA-FB-A4P5     TCGA-FB-A4P6 
"ATRX WILD-TYPE"   "ATRX MUTATED"   "ATRX MUTATED" "ATRX WILD-TYPE" 
    TCGA-FB-A545     TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-FB-A7DR 
"ATRX WILD-TYPE" "ATRX WILD-TYPE" "ATRX WILD-TYPE" "ATRX WILD-TYPE" 
    TCGA-FZ-5920     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-H6-8124 
"ATRX WILD-TYPE" "ATRX WILD-TYPE" "ATRX WILD-TYPE" "ATRX WILD-TYPE" 
    TCGA-H6-A45N     TCGA-H8-A6C1     TCGA-HZ-7289     TCGA-HZ-7918 
"ATRX WILD-TYPE" "ATRX WILD-TYPE" "ATRX WILD-TYPE" "ATRX WILD-TYPE" 
    TCGA-HZ-7919     TCGA-HZ-7922     TCGA-HZ-7923     TCGA-HZ-7924 
"ATRX WILD-TYPE" "ATRX WILD-TYPE" "ATRX WILD-TYPE" "ATRX WILD-TYPE" 
    TCGA-HZ-7925     TCGA-HZ-7926     TCGA-HZ-8001     TCGA-HZ-8002 
"ATRX WILD-TYPE" "ATRX WILD-TYPE" "ATRX WILD-TYPE" "ATRX WILD-TYPE" 
    TCGA-HZ-8003     TCGA-HZ-8005     TCGA-HZ-8315     TCGA-HZ-8317 
  "ATRX MUTATED" "ATRX WILD-TYPE" "ATRX WILD-TYPE"   "ATRX MUTATED" 
    TCGA-HZ-8636     TCGA-HZ-8638     TCGA-HZ-A49G     TCGA-HZ-A49H 
"ATRX WILD-TYPE" "ATRX WILD-TYPE" "ATRX WILD-TYPE" "ATRX WILD-TYPE" 
    TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-IB-7644     TCGA-IB-7645 
"ATRX WILD-TYPE" "ATRX WILD-TYPE" "ATRX WILD-TYPE" "ATRX WILD-TYPE" 
    TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7651 
"ATRX WILD-TYPE" "ATRX WILD-TYPE"   "ATRX MUTATED" "ATRX WILD-TYPE" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887 
"ATRX WILD-TYPE" "ATRX WILD-TYPE" "ATRX WILD-TYPE" "ATRX WILD-TYPE" 
    TCGA-IB-7888     TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891 
"ATRX WILD-TYPE" "ATRX WILD-TYPE" "ATRX WILD-TYPE" "ATRX WILD-TYPE" 
    TCGA-IB-7893     TCGA-IB-7897     TCGA-IB-8126     TCGA-IB-8127 
"ATRX WILD-TYPE"   "ATRX MUTATED" "ATRX WILD-TYPE" "ATRX WILD-TYPE" 
    TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS 
"ATRX WILD-TYPE" "ATRX WILD-TYPE" "ATRX WILD-TYPE" "ATRX WILD-TYPE" 
    TCGA-IB-A5ST     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
"ATRX WILD-TYPE" "ATRX WILD-TYPE" "ATRX WILD-TYPE" "ATRX WILD-TYPE" 
    TCGA-PZ-A5RE     TCGA-Q3-A5QY     TCGA-US-A779     TCGA-US-A77E 
"ATRX WILD-TYPE" "ATRX WILD-TYPE" "ATRX WILD-TYPE" "ATRX WILD-TYPE" 
    TCGA-US-A77J 
"ATRX WILD-TYPE" 
[1] "hr=" "1.5"
D1V2, continuous
                vv
clus             STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  ATRX MUTATED          0        0         1         5         0        0
  ATRX WILD-TYPE        1        4        10        46         2        3
D1V3, multiclass
                vv
clus             T1+T2 T3+T4
  ATRX MUTATED       0     6
  ATRX WILD-TYPE     6    60
D1V4, multiclass
       clus
vv      ATRX MUTATED ATRX WILD-TYPE
  T1+T2            0              6
  T3+T4            6             60
D1V5, binary
                cls
clus              0  1
  ATRX MUTATED    1  5
  ATRX WILD-TYPE 16 49
[1] "tbl2"
                cls
clus             [,1] [,2]
  ATRX MUTATED      1    5
  ATRX WILD-TYPE   16   49
   clus
vv  ATRX MUTATED ATRX WILD-TYPE
  0            1             16
  1            5             49
                vv
clus             M0 M1 MX
  ATRX MUTATED    3  0  3
  ATRX WILD-TYPE 36  3 27
D1V6, multiclass
    clus
vv   ATRX MUTATED ATRX WILD-TYPE
  M0            3             36
  M1            0              3
  MX            3             27
D1V7, binary
                cls
clus              0  1
  ATRX MUTATED    5  1
  ATRX WILD-TYPE 31 35
[1] "tbl2"
                cls
clus             [,1] [,2]
  ATRX MUTATED      5    1
  ATRX WILD-TYPE   31   35
        clus
vv       ATRX MUTATED ATRX WILD-TYPE
  FEMALE            5             31
  MALE              1             35
                vv
clus             PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  ATRX MUTATED                                     6
  ATRX WILD-TYPE                                  59
                vv
clus             PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  ATRX MUTATED                                       0
  ATRX WILD-TYPE                                     4
                vv
clus             PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  ATRX MUTATED                                                  0
  ATRX WILD-TYPE                                                2
D1V8, multiclass
                                                  clus
vv                                                 ATRX MUTATED ATRX WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                         6             59
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                       0              4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA            0              2
D1V9, continuous
[1] "Remove cluster labels:" "ATRX MUTATED"          
clus
  ATRX MUTATED ATRX WILD-TYPE 
             2             20 
    TCGA-F2-6880     TCGA-FB-A4P6     TCGA-FB-A5VM     TCGA-FB-A78T 
"ATRX WILD-TYPE" "ATRX WILD-TYPE" "ATRX WILD-TYPE" "ATRX WILD-TYPE" 
    TCGA-FB-A7DR     TCGA-H6-8124     TCGA-H6-A45N     TCGA-H8-A6C1 
"ATRX WILD-TYPE" "ATRX WILD-TYPE" "ATRX WILD-TYPE" "ATRX WILD-TYPE" 
    TCGA-IB-7644     TCGA-IB-7651     TCGA-IB-7885     TCGA-IB-7886 
"ATRX WILD-TYPE" "ATRX WILD-TYPE" "ATRX WILD-TYPE" "ATRX WILD-TYPE" 
    TCGA-IB-7887     TCGA-IB-7891     TCGA-IB-8126     TCGA-IB-8127 
"ATRX WILD-TYPE" "ATRX WILD-TYPE" "ATRX WILD-TYPE" "ATRX WILD-TYPE" 
    TCGA-IB-A5SS     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
"ATRX WILD-TYPE" "ATRX WILD-TYPE" "ATRX WILD-TYPE" "ATRX WILD-TYPE" 
D1V10, continuous
[1] "Remove cluster labels:" "ATRX MUTATED"          
clus
  ATRX MUTATED ATRX WILD-TYPE 
             2             17 
    TCGA-FB-A4P6     TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-FB-A7DR 
"ATRX WILD-TYPE" "ATRX WILD-TYPE" "ATRX WILD-TYPE" "ATRX WILD-TYPE" 
    TCGA-H6-8124     TCGA-H8-A6C1     TCGA-IB-7644     TCGA-IB-7651 
"ATRX WILD-TYPE" "ATRX WILD-TYPE" "ATRX WILD-TYPE" "ATRX WILD-TYPE" 
    TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7891     TCGA-IB-8126 
"ATRX WILD-TYPE" "ATRX WILD-TYPE" "ATRX WILD-TYPE" "ATRX WILD-TYPE" 
    TCGA-IB-8127     TCGA-IB-A5SS     TCGA-IB-A6UG     TCGA-LB-A7SX 
"ATRX WILD-TYPE" "ATRX WILD-TYPE" "ATRX WILD-TYPE" "ATRX WILD-TYPE" 
    TCGA-OE-A75W 
"ATRX WILD-TYPE" 
                vv
clus             R0 R1 RX
  ATRX MUTATED    4  2  0
  ATRX WILD-TYPE 38 22  2
D1V11, multiclass
    clus
vv   ATRX MUTATED ATRX WILD-TYPE
  R0            4             38
  R1            2             22
  RX            0              2
D1V12, continuous

Clustering(2) Variable = GRIN1 MUTATION ANALYSIS
D2V1, survival
                 sevent
clus2              0  1
  GRIN1 MUTATED    2  2
  GRIN1 WILD-TYPE 38 27
  GRIN1 MUTATED GRIN1 WILD-TYPE 
              4              65 
  GRIN1 MUTATED GRIN1 WILD-TYPE 
              2              27 
$`GRIN1 MUTATED`
TCGA-HZ-8001 TCGA-HZ-8003 TCGA-IB-7651 TCGA-IB-7893 
        0.62         0.69        19.82         3.85 

$`GRIN1 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P5 TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR 
        0.13        11.93        12.66         2.47         0.03         5.46 
TCGA-FZ-5920 TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 
        2.01        36.20        20.81        12.89         7.66        13.02 
TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 
        7.89         0.92         0.66         0.13         0.26        12.13 
TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8002 TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 
       11.87         0.26         0.79         3.95         0.92         0.53 
TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK 
        0.16         2.99         0.76         0.95         6.38         1.51 
TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7652 
       11.41        49.38         4.77        21.90        15.35        15.65 
TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 
       27.98         4.04         3.62        43.79        15.81        19.66 
TCGA-IB-7891 TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP 
       16.04        15.98         0.56        17.16        10.82         9.86 
TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W 
        7.20        15.12         0.26         1.35         4.18         3.62 
TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
        8.12        13.68        16.80        14.14        18.67 

  GRIN1 MUTATED GRIN1 WILD-TYPE 
           0.62            0.03 
  GRIN1 MUTATED GRIN1 WILD-TYPE 
          19.82           49.38 
  GRIN1 MUTATED GRIN1 WILD-TYPE 
           2.27            7.89 
[1] "0.6 - 19.8 (2.3)" "0.0 - 49.4 (7.9)"
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"GRIN1 WILD-TYPE" "GRIN1 WILD-TYPE" "GRIN1 WILD-TYPE" "GRIN1 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"GRIN1 WILD-TYPE" "GRIN1 WILD-TYPE" "GRIN1 WILD-TYPE" "GRIN1 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"GRIN1 WILD-TYPE" "GRIN1 WILD-TYPE" "GRIN1 WILD-TYPE" "GRIN1 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"GRIN1 WILD-TYPE" "GRIN1 WILD-TYPE" "GRIN1 WILD-TYPE" "GRIN1 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"GRIN1 WILD-TYPE" "GRIN1 WILD-TYPE" "GRIN1 WILD-TYPE" "GRIN1 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"GRIN1 WILD-TYPE" "GRIN1 WILD-TYPE" "GRIN1 WILD-TYPE" "GRIN1 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"GRIN1 WILD-TYPE" "GRIN1 WILD-TYPE"   "GRIN1 MUTATED" "GRIN1 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
  "GRIN1 MUTATED" "GRIN1 WILD-TYPE" "GRIN1 WILD-TYPE" "GRIN1 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"GRIN1 WILD-TYPE" "GRIN1 WILD-TYPE" "GRIN1 WILD-TYPE" "GRIN1 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"GRIN1 WILD-TYPE" "GRIN1 WILD-TYPE" "GRIN1 WILD-TYPE" "GRIN1 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"GRIN1 WILD-TYPE" "GRIN1 WILD-TYPE" "GRIN1 WILD-TYPE"   "GRIN1 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"GRIN1 WILD-TYPE" "GRIN1 WILD-TYPE" "GRIN1 WILD-TYPE" "GRIN1 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"GRIN1 WILD-TYPE" "GRIN1 WILD-TYPE" "GRIN1 WILD-TYPE" "GRIN1 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
  "GRIN1 MUTATED" "GRIN1 WILD-TYPE" "GRIN1 WILD-TYPE" "GRIN1 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"GRIN1 WILD-TYPE" "GRIN1 WILD-TYPE" "GRIN1 WILD-TYPE" "GRIN1 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"GRIN1 WILD-TYPE" "GRIN1 WILD-TYPE" "GRIN1 WILD-TYPE" "GRIN1 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"GRIN1 WILD-TYPE" "GRIN1 WILD-TYPE" "GRIN1 WILD-TYPE" "GRIN1 WILD-TYPE" 
     TCGA-US-A77J 
"GRIN1 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"GRIN1 WILD-TYPE" "GRIN1 WILD-TYPE" "GRIN1 WILD-TYPE" "GRIN1 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"GRIN1 WILD-TYPE" "GRIN1 WILD-TYPE" "GRIN1 WILD-TYPE" "GRIN1 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"GRIN1 WILD-TYPE" "GRIN1 WILD-TYPE" "GRIN1 WILD-TYPE" "GRIN1 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"GRIN1 WILD-TYPE" "GRIN1 WILD-TYPE" "GRIN1 WILD-TYPE" "GRIN1 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"GRIN1 WILD-TYPE" "GRIN1 WILD-TYPE" "GRIN1 WILD-TYPE" "GRIN1 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"GRIN1 WILD-TYPE" "GRIN1 WILD-TYPE" "GRIN1 WILD-TYPE" "GRIN1 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"GRIN1 WILD-TYPE" "GRIN1 WILD-TYPE"   "GRIN1 MUTATED" "GRIN1 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
  "GRIN1 MUTATED" "GRIN1 WILD-TYPE" "GRIN1 WILD-TYPE" "GRIN1 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"GRIN1 WILD-TYPE" "GRIN1 WILD-TYPE" "GRIN1 WILD-TYPE" "GRIN1 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"GRIN1 WILD-TYPE" "GRIN1 WILD-TYPE" "GRIN1 WILD-TYPE" "GRIN1 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"GRIN1 WILD-TYPE" "GRIN1 WILD-TYPE" "GRIN1 WILD-TYPE"   "GRIN1 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"GRIN1 WILD-TYPE" "GRIN1 WILD-TYPE" "GRIN1 WILD-TYPE" "GRIN1 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"GRIN1 WILD-TYPE" "GRIN1 WILD-TYPE" "GRIN1 WILD-TYPE" "GRIN1 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
  "GRIN1 MUTATED" "GRIN1 WILD-TYPE" "GRIN1 WILD-TYPE" "GRIN1 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"GRIN1 WILD-TYPE" "GRIN1 WILD-TYPE" "GRIN1 WILD-TYPE" "GRIN1 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"GRIN1 WILD-TYPE" "GRIN1 WILD-TYPE" "GRIN1 WILD-TYPE" "GRIN1 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"GRIN1 WILD-TYPE" "GRIN1 WILD-TYPE" "GRIN1 WILD-TYPE" "GRIN1 WILD-TYPE" 
     TCGA-US-A77J 
"GRIN1 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"GRIN1 WILD-TYPE" "GRIN1 WILD-TYPE" "GRIN1 WILD-TYPE" "GRIN1 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"GRIN1 WILD-TYPE" "GRIN1 WILD-TYPE" "GRIN1 WILD-TYPE" "GRIN1 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"GRIN1 WILD-TYPE" "GRIN1 WILD-TYPE" "GRIN1 WILD-TYPE" "GRIN1 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"GRIN1 WILD-TYPE" "GRIN1 WILD-TYPE" "GRIN1 WILD-TYPE" "GRIN1 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"GRIN1 WILD-TYPE" "GRIN1 WILD-TYPE" "GRIN1 WILD-TYPE" "GRIN1 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"GRIN1 WILD-TYPE" "GRIN1 WILD-TYPE" "GRIN1 WILD-TYPE" "GRIN1 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"GRIN1 WILD-TYPE" "GRIN1 WILD-TYPE"   "GRIN1 MUTATED" "GRIN1 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
  "GRIN1 MUTATED" "GRIN1 WILD-TYPE" "GRIN1 WILD-TYPE" "GRIN1 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"GRIN1 WILD-TYPE" "GRIN1 WILD-TYPE" "GRIN1 WILD-TYPE" "GRIN1 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"GRIN1 WILD-TYPE" "GRIN1 WILD-TYPE" "GRIN1 WILD-TYPE" "GRIN1 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"GRIN1 WILD-TYPE" "GRIN1 WILD-TYPE" "GRIN1 WILD-TYPE"   "GRIN1 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"GRIN1 WILD-TYPE" "GRIN1 WILD-TYPE" "GRIN1 WILD-TYPE" "GRIN1 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"GRIN1 WILD-TYPE" "GRIN1 WILD-TYPE" "GRIN1 WILD-TYPE" "GRIN1 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
  "GRIN1 MUTATED" "GRIN1 WILD-TYPE" "GRIN1 WILD-TYPE" "GRIN1 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"GRIN1 WILD-TYPE" "GRIN1 WILD-TYPE" "GRIN1 WILD-TYPE" "GRIN1 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"GRIN1 WILD-TYPE" "GRIN1 WILD-TYPE" "GRIN1 WILD-TYPE" "GRIN1 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"GRIN1 WILD-TYPE" "GRIN1 WILD-TYPE" "GRIN1 WILD-TYPE" "GRIN1 WILD-TYPE" 
     TCGA-US-A77J 
"GRIN1 WILD-TYPE" 
[1] "hr=" "1.7"
D2V2, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  GRIN1 MUTATED          0        1         1         2         1        0
  GRIN1 WILD-TYPE        1        3        10        49         1        3
D2V3, multiclass
                 vv
clus              T1+T2 T3+T4
  GRIN1 MUTATED       1     4
  GRIN1 WILD-TYPE     5    62
D2V4, multiclass
       clus
vv      GRIN1 MUTATED GRIN1 WILD-TYPE
  T1+T2             1               5
  T3+T4             4              62
D2V5, binary
                 cls
clus               0  1
  GRIN1 MUTATED    3  2
  GRIN1 WILD-TYPE 14 52
[1] "tbl2"
                 cls
clus              [,1] [,2]
  GRIN1 MUTATED      3    2
  GRIN1 WILD-TYPE   14   52
   clus
vv  GRIN1 MUTATED GRIN1 WILD-TYPE
  0             3              14
  1             2              52
                 vv
clus              M0 M1 MX
  GRIN1 MUTATED    2  0  3
  GRIN1 WILD-TYPE 37  3 27
D2V6, multiclass
    clus
vv   GRIN1 MUTATED GRIN1 WILD-TYPE
  M0             2              37
  M1             0               3
  MX             3              27
D2V7, binary
                 cls
clus               0  1
  GRIN1 MUTATED    2  3
  GRIN1 WILD-TYPE 34 33
[1] "tbl2"
                 cls
clus              [,1] [,2]
  GRIN1 MUTATED      2    3
  GRIN1 WILD-TYPE   34   33
        clus
vv       GRIN1 MUTATED GRIN1 WILD-TYPE
  FEMALE             2              34
  MALE               3              33
                 vv
clus              PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  GRIN1 MUTATED                                     5
  GRIN1 WILD-TYPE                                  60
                 vv
clus              PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  GRIN1 MUTATED                                       0
  GRIN1 WILD-TYPE                                     4
                 vv
clus              PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  GRIN1 MUTATED                                                  0
  GRIN1 WILD-TYPE                                                2
D2V8, multiclass
                                                  clus
vv                                                 GRIN1 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                          5
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                        0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA             0
                                                  clus
vv                                                 GRIN1 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                           60
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                          4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA               2
D2V9, continuous
[1] "Remove cluster labels:" "GRIN1 MUTATED"         
clus
  GRIN1 MUTATED GRIN1 WILD-TYPE 
              1              21 
     TCGA-F2-6880      TCGA-FB-A4P5      TCGA-FB-A4P6      TCGA-FB-A5VM 
"GRIN1 WILD-TYPE" "GRIN1 WILD-TYPE" "GRIN1 WILD-TYPE" "GRIN1 WILD-TYPE" 
     TCGA-FB-A78T      TCGA-FB-A7DR      TCGA-H6-8124      TCGA-H6-A45N 
"GRIN1 WILD-TYPE" "GRIN1 WILD-TYPE" "GRIN1 WILD-TYPE" "GRIN1 WILD-TYPE" 
     TCGA-H8-A6C1      TCGA-IB-7644      TCGA-IB-7649      TCGA-IB-7885 
"GRIN1 WILD-TYPE" "GRIN1 WILD-TYPE" "GRIN1 WILD-TYPE" "GRIN1 WILD-TYPE" 
     TCGA-IB-7886      TCGA-IB-7887      TCGA-IB-7891      TCGA-IB-8126 
"GRIN1 WILD-TYPE" "GRIN1 WILD-TYPE" "GRIN1 WILD-TYPE" "GRIN1 WILD-TYPE" 
     TCGA-IB-8127      TCGA-IB-A5SS      TCGA-IB-A6UG      TCGA-LB-A7SX 
"GRIN1 WILD-TYPE" "GRIN1 WILD-TYPE" "GRIN1 WILD-TYPE" "GRIN1 WILD-TYPE" 
     TCGA-OE-A75W 
"GRIN1 WILD-TYPE" 
D2V10, continuous
[1] "Remove cluster labels:" "GRIN1 MUTATED"         
clus
  GRIN1 MUTATED GRIN1 WILD-TYPE 
              1              18 
     TCGA-FB-A4P5      TCGA-FB-A4P6      TCGA-FB-A5VM      TCGA-FB-A78T 
"GRIN1 WILD-TYPE" "GRIN1 WILD-TYPE" "GRIN1 WILD-TYPE" "GRIN1 WILD-TYPE" 
     TCGA-FB-A7DR      TCGA-H6-8124      TCGA-H8-A6C1      TCGA-IB-7644 
"GRIN1 WILD-TYPE" "GRIN1 WILD-TYPE" "GRIN1 WILD-TYPE" "GRIN1 WILD-TYPE" 
     TCGA-IB-7649      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7891 
"GRIN1 WILD-TYPE" "GRIN1 WILD-TYPE" "GRIN1 WILD-TYPE" "GRIN1 WILD-TYPE" 
     TCGA-IB-8126      TCGA-IB-8127      TCGA-IB-A5SS      TCGA-IB-A6UG 
"GRIN1 WILD-TYPE" "GRIN1 WILD-TYPE" "GRIN1 WILD-TYPE" "GRIN1 WILD-TYPE" 
     TCGA-LB-A7SX      TCGA-OE-A75W 
"GRIN1 WILD-TYPE" "GRIN1 WILD-TYPE" 
                 vv
clus              R0 R1 RX
  GRIN1 MUTATED    5  0  0
  GRIN1 WILD-TYPE 37 24  2
D2V11, multiclass
    clus
vv   GRIN1 MUTATED GRIN1 WILD-TYPE
  R0             5              37
  R1             0              24
  RX             0               2
D2V12, continuous

Clustering(3) Variable = DHX9 MUTATION ANALYSIS
D3V1, survival
                sevent
clus2             0  1
  DHX9 MUTATED    3  4
  DHX9 WILD-TYPE 37 25
  DHX9 MUTATED DHX9 WILD-TYPE 
             7             62 
  DHX9 MUTATED DHX9 WILD-TYPE 
             4             25 
$`DHX9 MUTATED`
TCGA-F2-7276 TCGA-FB-A4P6 TCGA-HZ-7289 TCGA-HZ-7923 TCGA-IB-7646 TCGA-IB-7651 
        7.10        11.93         7.89         0.26         4.77        19.82 
TCGA-IB-A6UG 
        1.35 

$`DHX9 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-A44G TCGA-F2-A44H TCGA-FB-A4P5 
       10.98         9.70        11.84         5.03        19.27         0.13 
TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR TCGA-FZ-5920 TCGA-FZ-5922 
       12.66         2.47         0.03         5.46         2.01        36.20 
TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7918 TCGA-HZ-7919 
       20.81        12.89         7.66        13.02         0.92         0.66 
TCGA-HZ-7922 TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 
        0.13        12.13        11.87         0.26         0.62         0.79 
TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8636 TCGA-HZ-8638 
        0.69         3.95         0.92         0.53         0.16         2.99 
TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7645 
        0.76         0.95         6.38         1.51        11.41        49.38 
TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 
       21.90        15.35        15.65        27.98         4.04         3.62 
TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-7897 
       43.79        15.81        19.66        16.04         3.85        15.98 
TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS 
        0.56        17.16        10.82         9.86         7.20        15.12 
TCGA-IB-A5ST TCGA-LB-A7SX TCGA-OE-A75W TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 
        0.26         4.18         3.62         8.12        13.68        16.80 
TCGA-US-A77E TCGA-US-A77J 
       14.14        18.67 

  DHX9 MUTATED DHX9 WILD-TYPE 
          0.26           0.03 
  DHX9 MUTATED DHX9 WILD-TYPE 
         19.82          49.38 
  DHX9 MUTATED DHX9 WILD-TYPE 
          7.10           7.89 
[1] "0.3 - 19.8 (7.1)" "0.0 - 49.4 (7.9)"
    TCGA-F2-6879     TCGA-F2-6880     TCGA-F2-7273     TCGA-F2-7276 
"DHX9 WILD-TYPE" "DHX9 WILD-TYPE" "DHX9 WILD-TYPE"   "DHX9 MUTATED" 
    TCGA-F2-A44G     TCGA-F2-A44H     TCGA-FB-A4P5     TCGA-FB-A4P6 
"DHX9 WILD-TYPE" "DHX9 WILD-TYPE" "DHX9 WILD-TYPE"   "DHX9 MUTATED" 
    TCGA-FB-A545     TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-FB-A7DR 
"DHX9 WILD-TYPE" "DHX9 WILD-TYPE" "DHX9 WILD-TYPE" "DHX9 WILD-TYPE" 
    TCGA-FZ-5920     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-H6-8124 
"DHX9 WILD-TYPE" "DHX9 WILD-TYPE" "DHX9 WILD-TYPE" "DHX9 WILD-TYPE" 
    TCGA-H6-A45N     TCGA-H8-A6C1     TCGA-HZ-7289     TCGA-HZ-7918 
"DHX9 WILD-TYPE" "DHX9 WILD-TYPE"   "DHX9 MUTATED" "DHX9 WILD-TYPE" 
    TCGA-HZ-7919     TCGA-HZ-7922     TCGA-HZ-7923     TCGA-HZ-7924 
"DHX9 WILD-TYPE" "DHX9 WILD-TYPE"   "DHX9 MUTATED" "DHX9 WILD-TYPE" 
    TCGA-HZ-7925     TCGA-HZ-7926     TCGA-HZ-8001     TCGA-HZ-8002 
"DHX9 WILD-TYPE" "DHX9 WILD-TYPE" "DHX9 WILD-TYPE" "DHX9 WILD-TYPE" 
    TCGA-HZ-8003     TCGA-HZ-8005     TCGA-HZ-8315     TCGA-HZ-8317 
"DHX9 WILD-TYPE" "DHX9 WILD-TYPE" "DHX9 WILD-TYPE" "DHX9 WILD-TYPE" 
    TCGA-HZ-8636     TCGA-HZ-8638     TCGA-HZ-A49G     TCGA-HZ-A49H 
"DHX9 WILD-TYPE" "DHX9 WILD-TYPE" "DHX9 WILD-TYPE" "DHX9 WILD-TYPE" 
    TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-IB-7644     TCGA-IB-7645 
"DHX9 WILD-TYPE" "DHX9 WILD-TYPE" "DHX9 WILD-TYPE" "DHX9 WILD-TYPE" 
    TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7651 
  "DHX9 MUTATED" "DHX9 WILD-TYPE" "DHX9 WILD-TYPE"   "DHX9 MUTATED" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887 
"DHX9 WILD-TYPE" "DHX9 WILD-TYPE" "DHX9 WILD-TYPE" "DHX9 WILD-TYPE" 
    TCGA-IB-7888     TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891 
"DHX9 WILD-TYPE" "DHX9 WILD-TYPE" "DHX9 WILD-TYPE" "DHX9 WILD-TYPE" 
    TCGA-IB-7893     TCGA-IB-7897     TCGA-IB-8126     TCGA-IB-8127 
"DHX9 WILD-TYPE" "DHX9 WILD-TYPE" "DHX9 WILD-TYPE" "DHX9 WILD-TYPE" 
    TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS 
"DHX9 WILD-TYPE" "DHX9 WILD-TYPE" "DHX9 WILD-TYPE" "DHX9 WILD-TYPE" 
    TCGA-IB-A5ST     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
"DHX9 WILD-TYPE"   "DHX9 MUTATED" "DHX9 WILD-TYPE" "DHX9 WILD-TYPE" 
    TCGA-PZ-A5RE     TCGA-Q3-A5QY     TCGA-US-A779     TCGA-US-A77E 
"DHX9 WILD-TYPE" "DHX9 WILD-TYPE" "DHX9 WILD-TYPE" "DHX9 WILD-TYPE" 
    TCGA-US-A77J 
"DHX9 WILD-TYPE" 
    TCGA-F2-6879     TCGA-F2-6880     TCGA-F2-7273     TCGA-F2-7276 
"DHX9 WILD-TYPE" "DHX9 WILD-TYPE" "DHX9 WILD-TYPE"   "DHX9 MUTATED" 
    TCGA-F2-A44G     TCGA-F2-A44H     TCGA-FB-A4P5     TCGA-FB-A4P6 
"DHX9 WILD-TYPE" "DHX9 WILD-TYPE" "DHX9 WILD-TYPE"   "DHX9 MUTATED" 
    TCGA-FB-A545     TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-FB-A7DR 
"DHX9 WILD-TYPE" "DHX9 WILD-TYPE" "DHX9 WILD-TYPE" "DHX9 WILD-TYPE" 
    TCGA-FZ-5920     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-H6-8124 
"DHX9 WILD-TYPE" "DHX9 WILD-TYPE" "DHX9 WILD-TYPE" "DHX9 WILD-TYPE" 
    TCGA-H6-A45N     TCGA-H8-A6C1     TCGA-HZ-7289     TCGA-HZ-7918 
"DHX9 WILD-TYPE" "DHX9 WILD-TYPE"   "DHX9 MUTATED" "DHX9 WILD-TYPE" 
    TCGA-HZ-7919     TCGA-HZ-7922     TCGA-HZ-7923     TCGA-HZ-7924 
"DHX9 WILD-TYPE" "DHX9 WILD-TYPE"   "DHX9 MUTATED" "DHX9 WILD-TYPE" 
    TCGA-HZ-7925     TCGA-HZ-7926     TCGA-HZ-8001     TCGA-HZ-8002 
"DHX9 WILD-TYPE" "DHX9 WILD-TYPE" "DHX9 WILD-TYPE" "DHX9 WILD-TYPE" 
    TCGA-HZ-8003     TCGA-HZ-8005     TCGA-HZ-8315     TCGA-HZ-8317 
"DHX9 WILD-TYPE" "DHX9 WILD-TYPE" "DHX9 WILD-TYPE" "DHX9 WILD-TYPE" 
    TCGA-HZ-8636     TCGA-HZ-8638     TCGA-HZ-A49G     TCGA-HZ-A49H 
"DHX9 WILD-TYPE" "DHX9 WILD-TYPE" "DHX9 WILD-TYPE" "DHX9 WILD-TYPE" 
    TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-IB-7644     TCGA-IB-7645 
"DHX9 WILD-TYPE" "DHX9 WILD-TYPE" "DHX9 WILD-TYPE" "DHX9 WILD-TYPE" 
    TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7651 
  "DHX9 MUTATED" "DHX9 WILD-TYPE" "DHX9 WILD-TYPE"   "DHX9 MUTATED" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887 
"DHX9 WILD-TYPE" "DHX9 WILD-TYPE" "DHX9 WILD-TYPE" "DHX9 WILD-TYPE" 
    TCGA-IB-7888     TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891 
"DHX9 WILD-TYPE" "DHX9 WILD-TYPE" "DHX9 WILD-TYPE" "DHX9 WILD-TYPE" 
    TCGA-IB-7893     TCGA-IB-7897     TCGA-IB-8126     TCGA-IB-8127 
"DHX9 WILD-TYPE" "DHX9 WILD-TYPE" "DHX9 WILD-TYPE" "DHX9 WILD-TYPE" 
    TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS 
"DHX9 WILD-TYPE" "DHX9 WILD-TYPE" "DHX9 WILD-TYPE" "DHX9 WILD-TYPE" 
    TCGA-IB-A5ST     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
"DHX9 WILD-TYPE"   "DHX9 MUTATED" "DHX9 WILD-TYPE" "DHX9 WILD-TYPE" 
    TCGA-PZ-A5RE     TCGA-Q3-A5QY     TCGA-US-A779     TCGA-US-A77E 
"DHX9 WILD-TYPE" "DHX9 WILD-TYPE" "DHX9 WILD-TYPE" "DHX9 WILD-TYPE" 
    TCGA-US-A77J 
"DHX9 WILD-TYPE" 
    TCGA-F2-6879     TCGA-F2-6880     TCGA-F2-7273     TCGA-F2-7276 
"DHX9 WILD-TYPE" "DHX9 WILD-TYPE" "DHX9 WILD-TYPE"   "DHX9 MUTATED" 
    TCGA-F2-A44G     TCGA-F2-A44H     TCGA-FB-A4P5     TCGA-FB-A4P6 
"DHX9 WILD-TYPE" "DHX9 WILD-TYPE" "DHX9 WILD-TYPE"   "DHX9 MUTATED" 
    TCGA-FB-A545     TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-FB-A7DR 
"DHX9 WILD-TYPE" "DHX9 WILD-TYPE" "DHX9 WILD-TYPE" "DHX9 WILD-TYPE" 
    TCGA-FZ-5920     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-H6-8124 
"DHX9 WILD-TYPE" "DHX9 WILD-TYPE" "DHX9 WILD-TYPE" "DHX9 WILD-TYPE" 
    TCGA-H6-A45N     TCGA-H8-A6C1     TCGA-HZ-7289     TCGA-HZ-7918 
"DHX9 WILD-TYPE" "DHX9 WILD-TYPE"   "DHX9 MUTATED" "DHX9 WILD-TYPE" 
    TCGA-HZ-7919     TCGA-HZ-7922     TCGA-HZ-7923     TCGA-HZ-7924 
"DHX9 WILD-TYPE" "DHX9 WILD-TYPE"   "DHX9 MUTATED" "DHX9 WILD-TYPE" 
    TCGA-HZ-7925     TCGA-HZ-7926     TCGA-HZ-8001     TCGA-HZ-8002 
"DHX9 WILD-TYPE" "DHX9 WILD-TYPE" "DHX9 WILD-TYPE" "DHX9 WILD-TYPE" 
    TCGA-HZ-8003     TCGA-HZ-8005     TCGA-HZ-8315     TCGA-HZ-8317 
"DHX9 WILD-TYPE" "DHX9 WILD-TYPE" "DHX9 WILD-TYPE" "DHX9 WILD-TYPE" 
    TCGA-HZ-8636     TCGA-HZ-8638     TCGA-HZ-A49G     TCGA-HZ-A49H 
"DHX9 WILD-TYPE" "DHX9 WILD-TYPE" "DHX9 WILD-TYPE" "DHX9 WILD-TYPE" 
    TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-IB-7644     TCGA-IB-7645 
"DHX9 WILD-TYPE" "DHX9 WILD-TYPE" "DHX9 WILD-TYPE" "DHX9 WILD-TYPE" 
    TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7651 
  "DHX9 MUTATED" "DHX9 WILD-TYPE" "DHX9 WILD-TYPE"   "DHX9 MUTATED" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887 
"DHX9 WILD-TYPE" "DHX9 WILD-TYPE" "DHX9 WILD-TYPE" "DHX9 WILD-TYPE" 
    TCGA-IB-7888     TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891 
"DHX9 WILD-TYPE" "DHX9 WILD-TYPE" "DHX9 WILD-TYPE" "DHX9 WILD-TYPE" 
    TCGA-IB-7893     TCGA-IB-7897     TCGA-IB-8126     TCGA-IB-8127 
"DHX9 WILD-TYPE" "DHX9 WILD-TYPE" "DHX9 WILD-TYPE" "DHX9 WILD-TYPE" 
    TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS 
"DHX9 WILD-TYPE" "DHX9 WILD-TYPE" "DHX9 WILD-TYPE" "DHX9 WILD-TYPE" 
    TCGA-IB-A5ST     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
"DHX9 WILD-TYPE"   "DHX9 MUTATED" "DHX9 WILD-TYPE" "DHX9 WILD-TYPE" 
    TCGA-PZ-A5RE     TCGA-Q3-A5QY     TCGA-US-A779     TCGA-US-A77E 
"DHX9 WILD-TYPE" "DHX9 WILD-TYPE" "DHX9 WILD-TYPE" "DHX9 WILD-TYPE" 
    TCGA-US-A77J 
"DHX9 WILD-TYPE" 
[1] "hr=" "2"  
D3V2, continuous
                vv
clus             STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  DHX9 MUTATED          0        0         1         7         0        0
  DHX9 WILD-TYPE        1        4        10        44         2        3
D3V3, multiclass
                vv
clus             T1+T2 T3+T4
  DHX9 MUTATED       0     8
  DHX9 WILD-TYPE     6    58
D3V4, multiclass
       clus
vv      DHX9 MUTATED DHX9 WILD-TYPE
  T1+T2            0              6
  T3+T4            8             58
D3V5, binary
                cls
clus              0  1
  DHX9 MUTATED    1  7
  DHX9 WILD-TYPE 16 47
[1] "tbl2"
                cls
clus             [,1] [,2]
  DHX9 MUTATED      1    7
  DHX9 WILD-TYPE   16   47
   clus
vv  DHX9 MUTATED DHX9 WILD-TYPE
  0            1             16
  1            7             47
                vv
clus             M0 M1 MX
  DHX9 MUTATED    4  0  4
  DHX9 WILD-TYPE 35  3 26
D3V6, multiclass
    clus
vv   DHX9 MUTATED DHX9 WILD-TYPE
  M0            4             35
  M1            0              3
  MX            4             26
D3V7, binary
                cls
clus              0  1
  DHX9 MUTATED    2  6
  DHX9 WILD-TYPE 34 30
[1] "tbl2"
                cls
clus             [,1] [,2]
  DHX9 MUTATED      2    6
  DHX9 WILD-TYPE   34   30
        clus
vv       DHX9 MUTATED DHX9 WILD-TYPE
  FEMALE            2             34
  MALE              6             30
                vv
clus             PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  DHX9 MUTATED                                     7
  DHX9 WILD-TYPE                                  58
                vv
clus             PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  DHX9 MUTATED                                       1
  DHX9 WILD-TYPE                                     3
                vv
clus             PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  DHX9 MUTATED                                                  0
  DHX9 WILD-TYPE                                                2
D3V8, multiclass
                                                  clus
vv                                                 DHX9 MUTATED DHX9 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                         7             58
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                       1              3
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA            0              2
D3V9, continuous
D3V10, continuous
                vv
clus             R0 R1 RX
  DHX9 MUTATED    4  2  1
  DHX9 WILD-TYPE 38 22  1
D3V11, multiclass
    clus
vv   DHX9 MUTATED DHX9 WILD-TYPE
  R0            4             38
  R1            2             22
  RX            1              1
D3V12, continuous

Clustering(4) Variable = HIBCH MUTATION ANALYSIS
D4V1, survival
                 sevent
clus2              0  1
  HIBCH MUTATED    4  2
  HIBCH WILD-TYPE 36 27
  HIBCH MUTATED HIBCH WILD-TYPE 
              6              63 
  HIBCH MUTATED HIBCH WILD-TYPE 
              2              27 
$`HIBCH MUTATED`
TCGA-FB-A4P5 TCGA-HZ-7918 TCGA-HZ-7925 TCGA-HZ-8317 TCGA-HZ-8638 TCGA-US-A77J 
        0.13         0.92        11.87         0.53         2.99        18.67 

$`HIBCH WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR TCGA-FZ-5920 
       11.93        12.66         2.47         0.03         5.46         2.01 
TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7289 
       36.20        20.81        12.89         7.66        13.02         7.89 
TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7926 TCGA-HZ-8001 
        0.66         0.13         0.26        12.13         0.26         0.62 
TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8636 TCGA-HZ-A49G 
        0.79         0.69         3.95         0.92         0.16         0.76 
TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7646 
        0.95         6.38         1.51        11.41        49.38         4.77 
TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7651 TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7886 
       21.90        15.35        19.82        15.65        27.98         4.04 
TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-7893 
        3.62        43.79        15.81        19.66        16.04         3.85 
TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ 
       15.98         0.56        17.16        10.82         9.86         7.20 
TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W TCGA-PZ-A5RE 
       15.12         0.26         1.35         4.18         3.62         8.12 
TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E 
       13.68        16.80        14.14 

  HIBCH MUTATED HIBCH WILD-TYPE 
           0.13            0.03 
  HIBCH MUTATED HIBCH WILD-TYPE 
          18.67           49.38 
  HIBCH MUTATED HIBCH WILD-TYPE 
          1.955           7.890 
[1] "0.1 - 18.7 (2.0)" "0.0 - 49.4 (7.9)"
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"HIBCH WILD-TYPE" "HIBCH WILD-TYPE" "HIBCH WILD-TYPE" "HIBCH WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"HIBCH WILD-TYPE" "HIBCH WILD-TYPE"   "HIBCH MUTATED" "HIBCH WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"HIBCH WILD-TYPE" "HIBCH WILD-TYPE" "HIBCH WILD-TYPE" "HIBCH WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"HIBCH WILD-TYPE" "HIBCH WILD-TYPE" "HIBCH WILD-TYPE" "HIBCH WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"HIBCH WILD-TYPE" "HIBCH WILD-TYPE" "HIBCH WILD-TYPE"   "HIBCH MUTATED" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"HIBCH WILD-TYPE" "HIBCH WILD-TYPE" "HIBCH WILD-TYPE" "HIBCH WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
  "HIBCH MUTATED" "HIBCH WILD-TYPE" "HIBCH WILD-TYPE" "HIBCH WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"HIBCH WILD-TYPE" "HIBCH WILD-TYPE" "HIBCH WILD-TYPE"   "HIBCH MUTATED" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"HIBCH WILD-TYPE"   "HIBCH MUTATED" "HIBCH WILD-TYPE" "HIBCH WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"HIBCH WILD-TYPE" "HIBCH WILD-TYPE" "HIBCH WILD-TYPE" "HIBCH WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"HIBCH WILD-TYPE" "HIBCH WILD-TYPE" "HIBCH WILD-TYPE" "HIBCH WILD-TYPE" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"HIBCH WILD-TYPE" "HIBCH WILD-TYPE" "HIBCH WILD-TYPE" "HIBCH WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"HIBCH WILD-TYPE" "HIBCH WILD-TYPE" "HIBCH WILD-TYPE" "HIBCH WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"HIBCH WILD-TYPE" "HIBCH WILD-TYPE" "HIBCH WILD-TYPE" "HIBCH WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"HIBCH WILD-TYPE" "HIBCH WILD-TYPE" "HIBCH WILD-TYPE" "HIBCH WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"HIBCH WILD-TYPE" "HIBCH WILD-TYPE" "HIBCH WILD-TYPE" "HIBCH WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"HIBCH WILD-TYPE" "HIBCH WILD-TYPE" "HIBCH WILD-TYPE" "HIBCH WILD-TYPE" 
     TCGA-US-A77J 
  "HIBCH MUTATED" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"HIBCH WILD-TYPE" "HIBCH WILD-TYPE" "HIBCH WILD-TYPE" "HIBCH WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"HIBCH WILD-TYPE" "HIBCH WILD-TYPE"   "HIBCH MUTATED" "HIBCH WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"HIBCH WILD-TYPE" "HIBCH WILD-TYPE" "HIBCH WILD-TYPE" "HIBCH WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"HIBCH WILD-TYPE" "HIBCH WILD-TYPE" "HIBCH WILD-TYPE" "HIBCH WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"HIBCH WILD-TYPE" "HIBCH WILD-TYPE" "HIBCH WILD-TYPE"   "HIBCH MUTATED" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"HIBCH WILD-TYPE" "HIBCH WILD-TYPE" "HIBCH WILD-TYPE" "HIBCH WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
  "HIBCH MUTATED" "HIBCH WILD-TYPE" "HIBCH WILD-TYPE" "HIBCH WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"HIBCH WILD-TYPE" "HIBCH WILD-TYPE" "HIBCH WILD-TYPE"   "HIBCH MUTATED" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"HIBCH WILD-TYPE"   "HIBCH MUTATED" "HIBCH WILD-TYPE" "HIBCH WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"HIBCH WILD-TYPE" "HIBCH WILD-TYPE" "HIBCH WILD-TYPE" "HIBCH WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"HIBCH WILD-TYPE" "HIBCH WILD-TYPE" "HIBCH WILD-TYPE" "HIBCH WILD-TYPE" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"HIBCH WILD-TYPE" "HIBCH WILD-TYPE" "HIBCH WILD-TYPE" "HIBCH WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"HIBCH WILD-TYPE" "HIBCH WILD-TYPE" "HIBCH WILD-TYPE" "HIBCH WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"HIBCH WILD-TYPE" "HIBCH WILD-TYPE" "HIBCH WILD-TYPE" "HIBCH WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"HIBCH WILD-TYPE" "HIBCH WILD-TYPE" "HIBCH WILD-TYPE" "HIBCH WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"HIBCH WILD-TYPE" "HIBCH WILD-TYPE" "HIBCH WILD-TYPE" "HIBCH WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"HIBCH WILD-TYPE" "HIBCH WILD-TYPE" "HIBCH WILD-TYPE" "HIBCH WILD-TYPE" 
     TCGA-US-A77J 
  "HIBCH MUTATED" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"HIBCH WILD-TYPE" "HIBCH WILD-TYPE" "HIBCH WILD-TYPE" "HIBCH WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"HIBCH WILD-TYPE" "HIBCH WILD-TYPE"   "HIBCH MUTATED" "HIBCH WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"HIBCH WILD-TYPE" "HIBCH WILD-TYPE" "HIBCH WILD-TYPE" "HIBCH WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"HIBCH WILD-TYPE" "HIBCH WILD-TYPE" "HIBCH WILD-TYPE" "HIBCH WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"HIBCH WILD-TYPE" "HIBCH WILD-TYPE" "HIBCH WILD-TYPE"   "HIBCH MUTATED" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"HIBCH WILD-TYPE" "HIBCH WILD-TYPE" "HIBCH WILD-TYPE" "HIBCH WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
  "HIBCH MUTATED" "HIBCH WILD-TYPE" "HIBCH WILD-TYPE" "HIBCH WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"HIBCH WILD-TYPE" "HIBCH WILD-TYPE" "HIBCH WILD-TYPE"   "HIBCH MUTATED" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"HIBCH WILD-TYPE"   "HIBCH MUTATED" "HIBCH WILD-TYPE" "HIBCH WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"HIBCH WILD-TYPE" "HIBCH WILD-TYPE" "HIBCH WILD-TYPE" "HIBCH WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"HIBCH WILD-TYPE" "HIBCH WILD-TYPE" "HIBCH WILD-TYPE" "HIBCH WILD-TYPE" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"HIBCH WILD-TYPE" "HIBCH WILD-TYPE" "HIBCH WILD-TYPE" "HIBCH WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"HIBCH WILD-TYPE" "HIBCH WILD-TYPE" "HIBCH WILD-TYPE" "HIBCH WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"HIBCH WILD-TYPE" "HIBCH WILD-TYPE" "HIBCH WILD-TYPE" "HIBCH WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"HIBCH WILD-TYPE" "HIBCH WILD-TYPE" "HIBCH WILD-TYPE" "HIBCH WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"HIBCH WILD-TYPE" "HIBCH WILD-TYPE" "HIBCH WILD-TYPE" "HIBCH WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"HIBCH WILD-TYPE" "HIBCH WILD-TYPE" "HIBCH WILD-TYPE" "HIBCH WILD-TYPE" 
     TCGA-US-A77J 
  "HIBCH MUTATED" 
[1] "hr=" "1.5"
D4V2, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  HIBCH MUTATED          1        0         0         5         0        0
  HIBCH WILD-TYPE        0        4        11        46         2        3
D4V3, multiclass
                 vv
clus              T1+T2 T3+T4
  HIBCH MUTATED       1     5
  HIBCH WILD-TYPE     5    61
D4V4, multiclass
       clus
vv      HIBCH MUTATED HIBCH WILD-TYPE
  T1+T2             1               5
  T3+T4             5              61
D4V5, binary
                 cls
clus               0  1
  HIBCH MUTATED    1  5
  HIBCH WILD-TYPE 16 49
[1] "tbl2"
                 cls
clus              [,1] [,2]
  HIBCH MUTATED      1    5
  HIBCH WILD-TYPE   16   49
   clus
vv  HIBCH MUTATED HIBCH WILD-TYPE
  0             1              16
  1             5              49
                 vv
clus              M0 M1 MX
  HIBCH MUTATED    1  0  5
  HIBCH WILD-TYPE 38  3 25
D4V6, multiclass
    clus
vv   HIBCH MUTATED HIBCH WILD-TYPE
  M0             1              38
  M1             0               3
  MX             5              25
D4V7, binary
                 cls
clus               0  1
  HIBCH MUTATED    4  2
  HIBCH WILD-TYPE 32 34
[1] "tbl2"
                 cls
clus              [,1] [,2]
  HIBCH MUTATED      4    2
  HIBCH WILD-TYPE   32   34
        clus
vv       HIBCH MUTATED HIBCH WILD-TYPE
  FEMALE             4              32
  MALE               2              34
                 vv
clus              PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  HIBCH MUTATED                                     5
  HIBCH WILD-TYPE                                  60
                 vv
clus              PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  HIBCH MUTATED                                       0
  HIBCH WILD-TYPE                                     4
                 vv
clus              PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  HIBCH MUTATED                                                  1
  HIBCH WILD-TYPE                                                1
D4V8, multiclass
                                                  clus
vv                                                 HIBCH MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                          5
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                        0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA             1
                                                  clus
vv                                                 HIBCH WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                           60
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                          4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA               1
D4V9, continuous
[1] "Remove cluster labels:" "HIBCH MUTATED"         
clus
  HIBCH MUTATED HIBCH WILD-TYPE 
              1              21 
     TCGA-F2-6880      TCGA-FB-A4P6      TCGA-FB-A5VM      TCGA-FB-A78T 
"HIBCH WILD-TYPE" "HIBCH WILD-TYPE" "HIBCH WILD-TYPE" "HIBCH WILD-TYPE" 
     TCGA-FB-A7DR      TCGA-H6-8124      TCGA-H6-A45N      TCGA-H8-A6C1 
"HIBCH WILD-TYPE" "HIBCH WILD-TYPE" "HIBCH WILD-TYPE" "HIBCH WILD-TYPE" 
     TCGA-IB-7644      TCGA-IB-7649      TCGA-IB-7651      TCGA-IB-7885 
"HIBCH WILD-TYPE" "HIBCH WILD-TYPE" "HIBCH WILD-TYPE" "HIBCH WILD-TYPE" 
     TCGA-IB-7886      TCGA-IB-7887      TCGA-IB-7891      TCGA-IB-8126 
"HIBCH WILD-TYPE" "HIBCH WILD-TYPE" "HIBCH WILD-TYPE" "HIBCH WILD-TYPE" 
     TCGA-IB-8127      TCGA-IB-A5SS      TCGA-IB-A6UG      TCGA-LB-A7SX 
"HIBCH WILD-TYPE" "HIBCH WILD-TYPE" "HIBCH WILD-TYPE" "HIBCH WILD-TYPE" 
     TCGA-OE-A75W 
"HIBCH WILD-TYPE" 
D4V10, continuous
[1] "Remove cluster labels:" "HIBCH MUTATED"         
clus
  HIBCH MUTATED HIBCH WILD-TYPE 
              1              18 
     TCGA-FB-A4P6      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"HIBCH WILD-TYPE" "HIBCH WILD-TYPE" "HIBCH WILD-TYPE" "HIBCH WILD-TYPE" 
     TCGA-H6-8124      TCGA-H8-A6C1      TCGA-IB-7644      TCGA-IB-7649 
"HIBCH WILD-TYPE" "HIBCH WILD-TYPE" "HIBCH WILD-TYPE" "HIBCH WILD-TYPE" 
     TCGA-IB-7651      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7891 
"HIBCH WILD-TYPE" "HIBCH WILD-TYPE" "HIBCH WILD-TYPE" "HIBCH WILD-TYPE" 
     TCGA-IB-8126      TCGA-IB-8127      TCGA-IB-A5SS      TCGA-IB-A6UG 
"HIBCH WILD-TYPE" "HIBCH WILD-TYPE" "HIBCH WILD-TYPE" "HIBCH WILD-TYPE" 
     TCGA-LB-A7SX      TCGA-OE-A75W 
"HIBCH WILD-TYPE" "HIBCH WILD-TYPE" 
                 vv
clus              R0 R1 RX
  HIBCH MUTATED    5  1  0
  HIBCH WILD-TYPE 37 23  2
D4V11, multiclass
    clus
vv   HIBCH MUTATED HIBCH WILD-TYPE
  R0             5              37
  R1             1              23
  RX             0               2
D4V12, continuous

Clustering(5) Variable = AFTPH MUTATION ANALYSIS
D5V1, survival
                 sevent
clus2              0  1
  AFTPH MUTATED    6  5
  AFTPH WILD-TYPE 34 24
  AFTPH MUTATED AFTPH WILD-TYPE 
             11              58 
  AFTPH MUTATED AFTPH WILD-TYPE 
              5              24 
$`AFTPH MUTATED`
TCGA-H6-8124 TCGA-H6-A45N TCGA-HZ-7923 TCGA-HZ-8315 TCGA-HZ-8636 TCGA-HZ-A4BK 
       12.89         7.66         0.26         0.92         0.16         1.51 
TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7651 TCGA-IB-7890 TCGA-IB-8126 
       21.90        15.35        19.82        19.66         0.56 

$`AFTPH WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P5 TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR 
        0.13        11.93        12.66         2.47         0.03         5.46 
TCGA-FZ-5920 TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H8-A6C1 TCGA-HZ-7289 TCGA-HZ-7918 
        2.01        36.20        20.81        13.02         7.89         0.92 
TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8001 
        0.66         0.13        12.13        11.87         0.26         0.62 
TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8317 TCGA-HZ-8638 TCGA-HZ-A49G 
        0.79         0.69         3.95         0.53         2.99         0.76 
TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7652 
        0.95         6.38        11.41        49.38         4.77        15.65 
TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7891 
       27.98         4.04         3.62        43.79        15.81        16.04 
TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ 
        3.85        15.98        17.16        10.82         9.86         7.20 
TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W TCGA-PZ-A5RE 
       15.12         0.26         1.35         4.18         3.62         8.12 
TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
       13.68        16.80        14.14        18.67 

  AFTPH MUTATED AFTPH WILD-TYPE 
           0.16            0.03 
  AFTPH MUTATED AFTPH WILD-TYPE 
          21.90           49.38 
  AFTPH MUTATED AFTPH WILD-TYPE 
          7.660           7.545 
[1] "0.2 - 21.9 (7.7)" "0.0 - 49.4 (7.5)"
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"AFTPH WILD-TYPE" "AFTPH WILD-TYPE" "AFTPH WILD-TYPE" "AFTPH WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"AFTPH WILD-TYPE" "AFTPH WILD-TYPE" "AFTPH WILD-TYPE" "AFTPH WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"AFTPH WILD-TYPE" "AFTPH WILD-TYPE" "AFTPH WILD-TYPE" "AFTPH WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"AFTPH WILD-TYPE" "AFTPH WILD-TYPE" "AFTPH WILD-TYPE"   "AFTPH MUTATED" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
  "AFTPH MUTATED" "AFTPH WILD-TYPE" "AFTPH WILD-TYPE" "AFTPH WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"AFTPH WILD-TYPE" "AFTPH WILD-TYPE"   "AFTPH MUTATED" "AFTPH WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"AFTPH WILD-TYPE" "AFTPH WILD-TYPE" "AFTPH WILD-TYPE" "AFTPH WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"AFTPH WILD-TYPE" "AFTPH WILD-TYPE"   "AFTPH MUTATED" "AFTPH WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
  "AFTPH MUTATED" "AFTPH WILD-TYPE" "AFTPH WILD-TYPE" "AFTPH WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"AFTPH WILD-TYPE"   "AFTPH MUTATED" "AFTPH WILD-TYPE" "AFTPH WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"AFTPH WILD-TYPE"   "AFTPH MUTATED"   "AFTPH MUTATED"   "AFTPH MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"AFTPH WILD-TYPE" "AFTPH WILD-TYPE" "AFTPH WILD-TYPE" "AFTPH WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"AFTPH WILD-TYPE" "AFTPH WILD-TYPE"   "AFTPH MUTATED" "AFTPH WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"AFTPH WILD-TYPE" "AFTPH WILD-TYPE"   "AFTPH MUTATED" "AFTPH WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"AFTPH WILD-TYPE" "AFTPH WILD-TYPE" "AFTPH WILD-TYPE" "AFTPH WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"AFTPH WILD-TYPE" "AFTPH WILD-TYPE" "AFTPH WILD-TYPE" "AFTPH WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"AFTPH WILD-TYPE" "AFTPH WILD-TYPE" "AFTPH WILD-TYPE" "AFTPH WILD-TYPE" 
     TCGA-US-A77J 
"AFTPH WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"AFTPH WILD-TYPE" "AFTPH WILD-TYPE" "AFTPH WILD-TYPE" "AFTPH WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"AFTPH WILD-TYPE" "AFTPH WILD-TYPE" "AFTPH WILD-TYPE" "AFTPH WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"AFTPH WILD-TYPE" "AFTPH WILD-TYPE" "AFTPH WILD-TYPE" "AFTPH WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"AFTPH WILD-TYPE" "AFTPH WILD-TYPE" "AFTPH WILD-TYPE"   "AFTPH MUTATED" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
  "AFTPH MUTATED" "AFTPH WILD-TYPE" "AFTPH WILD-TYPE" "AFTPH WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"AFTPH WILD-TYPE" "AFTPH WILD-TYPE"   "AFTPH MUTATED" "AFTPH WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"AFTPH WILD-TYPE" "AFTPH WILD-TYPE" "AFTPH WILD-TYPE" "AFTPH WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"AFTPH WILD-TYPE" "AFTPH WILD-TYPE"   "AFTPH MUTATED" "AFTPH WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
  "AFTPH MUTATED" "AFTPH WILD-TYPE" "AFTPH WILD-TYPE" "AFTPH WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"AFTPH WILD-TYPE"   "AFTPH MUTATED" "AFTPH WILD-TYPE" "AFTPH WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"AFTPH WILD-TYPE"   "AFTPH MUTATED"   "AFTPH MUTATED"   "AFTPH MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"AFTPH WILD-TYPE" "AFTPH WILD-TYPE" "AFTPH WILD-TYPE" "AFTPH WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"AFTPH WILD-TYPE" "AFTPH WILD-TYPE"   "AFTPH MUTATED" "AFTPH WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"AFTPH WILD-TYPE" "AFTPH WILD-TYPE"   "AFTPH MUTATED" "AFTPH WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"AFTPH WILD-TYPE" "AFTPH WILD-TYPE" "AFTPH WILD-TYPE" "AFTPH WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"AFTPH WILD-TYPE" "AFTPH WILD-TYPE" "AFTPH WILD-TYPE" "AFTPH WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"AFTPH WILD-TYPE" "AFTPH WILD-TYPE" "AFTPH WILD-TYPE" "AFTPH WILD-TYPE" 
     TCGA-US-A77J 
"AFTPH WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"AFTPH WILD-TYPE" "AFTPH WILD-TYPE" "AFTPH WILD-TYPE" "AFTPH WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"AFTPH WILD-TYPE" "AFTPH WILD-TYPE" "AFTPH WILD-TYPE" "AFTPH WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"AFTPH WILD-TYPE" "AFTPH WILD-TYPE" "AFTPH WILD-TYPE" "AFTPH WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"AFTPH WILD-TYPE" "AFTPH WILD-TYPE" "AFTPH WILD-TYPE"   "AFTPH MUTATED" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
  "AFTPH MUTATED" "AFTPH WILD-TYPE" "AFTPH WILD-TYPE" "AFTPH WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"AFTPH WILD-TYPE" "AFTPH WILD-TYPE"   "AFTPH MUTATED" "AFTPH WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"AFTPH WILD-TYPE" "AFTPH WILD-TYPE" "AFTPH WILD-TYPE" "AFTPH WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"AFTPH WILD-TYPE" "AFTPH WILD-TYPE"   "AFTPH MUTATED" "AFTPH WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
  "AFTPH MUTATED" "AFTPH WILD-TYPE" "AFTPH WILD-TYPE" "AFTPH WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"AFTPH WILD-TYPE"   "AFTPH MUTATED" "AFTPH WILD-TYPE" "AFTPH WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"AFTPH WILD-TYPE"   "AFTPH MUTATED"   "AFTPH MUTATED"   "AFTPH MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"AFTPH WILD-TYPE" "AFTPH WILD-TYPE" "AFTPH WILD-TYPE" "AFTPH WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"AFTPH WILD-TYPE" "AFTPH WILD-TYPE"   "AFTPH MUTATED" "AFTPH WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"AFTPH WILD-TYPE" "AFTPH WILD-TYPE"   "AFTPH MUTATED" "AFTPH WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"AFTPH WILD-TYPE" "AFTPH WILD-TYPE" "AFTPH WILD-TYPE" "AFTPH WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"AFTPH WILD-TYPE" "AFTPH WILD-TYPE" "AFTPH WILD-TYPE" "AFTPH WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"AFTPH WILD-TYPE" "AFTPH WILD-TYPE" "AFTPH WILD-TYPE" "AFTPH WILD-TYPE" 
     TCGA-US-A77J 
"AFTPH WILD-TYPE" 
[1] "hr=" "1"  
D5V2, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  AFTPH MUTATED          0        1         2         6         1        1
  AFTPH WILD-TYPE        1        3         9        45         1        2
D5V3, multiclass
                 vv
clus              T1+T2 T3+T4
  AFTPH MUTATED       1    10
  AFTPH WILD-TYPE     5    56
D5V4, multiclass
       clus
vv      AFTPH MUTATED AFTPH WILD-TYPE
  T1+T2             1               5
  T3+T4            10              56
D5V5, binary
                 cls
clus               0  1
  AFTPH MUTATED    4  7
  AFTPH WILD-TYPE 13 47
[1] "tbl2"
                 cls
clus              [,1] [,2]
  AFTPH MUTATED      4    7
  AFTPH WILD-TYPE   13   47
   clus
vv  AFTPH MUTATED AFTPH WILD-TYPE
  0             4              13
  1             7              47
                 vv
clus              M0 M1 MX
  AFTPH MUTATED    6  1  4
  AFTPH WILD-TYPE 33  2 26
D5V6, multiclass
    clus
vv   AFTPH MUTATED AFTPH WILD-TYPE
  M0             6              33
  M1             1               2
  MX             4              26
D5V7, binary
                 cls
clus               0  1
  AFTPH MUTATED    8  3
  AFTPH WILD-TYPE 28 33
[1] "tbl2"
                 cls
clus              [,1] [,2]
  AFTPH MUTATED      8    3
  AFTPH WILD-TYPE   28   33
        clus
vv       AFTPH MUTATED AFTPH WILD-TYPE
  FEMALE             8              28
  MALE               3              33
                 vv
clus              PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  AFTPH MUTATED                                     9
  AFTPH WILD-TYPE                                  56
                 vv
clus              PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  AFTPH MUTATED                                       2
  AFTPH WILD-TYPE                                     2
                 vv
clus              PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  AFTPH MUTATED                                                  0
  AFTPH WILD-TYPE                                                2
D5V8, multiclass
                                                  clus
vv                                                 AFTPH MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                          9
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                        2
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA             0
                                                  clus
vv                                                 AFTPH WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                           56
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                          2
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA               2
D5V9, continuous
D5V10, continuous
                 vv
clus              R0 R1 RX
  AFTPH MUTATED    4  6  0
  AFTPH WILD-TYPE 38 18  2
D5V11, multiclass
    clus
vv   AFTPH MUTATED AFTPH WILD-TYPE
  R0             4              38
  R1             6              18
  RX             0               2
D5V12, continuous

Clustering(6) Variable = APP MUTATION ANALYSIS
D6V1, survival
               sevent
clus2            0  1
  APP MUTATED    7  2
  APP WILD-TYPE 33 27
  APP MUTATED APP WILD-TYPE 
            9            60 
  APP MUTATED APP WILD-TYPE 
            2            27 
$`APP MUTATED`
TCGA-FB-A4P6 TCGA-FZ-5922 TCGA-HZ-7925 TCGA-HZ-8001 TCGA-HZ-8003 TCGA-HZ-A49H 
       11.93        36.20        11.87         0.62         0.69         0.95 
TCGA-IB-7651 TCGA-IB-7885 TCGA-LB-A7SX 
       19.82        27.98         4.18 

$`APP WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P5 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR TCGA-FZ-5920 
        0.13        12.66         2.47         0.03         5.46         2.01 
TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7289 TCGA-HZ-7918 
       20.81        12.89         7.66        13.02         7.89         0.92 
TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7926 TCGA-HZ-8002 
        0.66         0.13         0.26        12.13         0.26         0.79 
TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G 
        3.95         0.92         0.53         0.16         2.99         0.76 
TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 
        6.38         1.51        11.41        49.38         4.77        21.90 
TCGA-IB-7649 TCGA-IB-7652 TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 
       15.35        15.65         4.04         3.62        43.79        15.81 
TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-8127 
       19.66        16.04         3.85        15.98         0.56        17.16 
TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG 
       10.82         9.86         7.20        15.12         0.26         1.35 
TCGA-OE-A75W TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
        3.62         8.12        13.68        16.80        14.14        18.67 

  APP MUTATED APP WILD-TYPE 
         0.62          0.03 
  APP MUTATED APP WILD-TYPE 
        36.20         49.38 
  APP MUTATED APP WILD-TYPE 
        11.87          7.43 
[1] "0.6 - 36.2 (11.9)" "0.0 - 49.4 (7.4)" 
   TCGA-F2-6879    TCGA-F2-6880    TCGA-F2-7273    TCGA-F2-7276    TCGA-F2-A44G 
"APP WILD-TYPE" "APP WILD-TYPE" "APP WILD-TYPE" "APP WILD-TYPE" "APP WILD-TYPE" 
   TCGA-F2-A44H    TCGA-FB-A4P5    TCGA-FB-A4P6    TCGA-FB-A545    TCGA-FB-A5VM 
"APP WILD-TYPE" "APP WILD-TYPE"   "APP MUTATED" "APP WILD-TYPE" "APP WILD-TYPE" 
   TCGA-FB-A78T    TCGA-FB-A7DR    TCGA-FZ-5920    TCGA-FZ-5922    TCGA-FZ-5923 
"APP WILD-TYPE" "APP WILD-TYPE" "APP WILD-TYPE"   "APP MUTATED" "APP WILD-TYPE" 
   TCGA-H6-8124    TCGA-H6-A45N    TCGA-H8-A6C1    TCGA-HZ-7289    TCGA-HZ-7918 
"APP WILD-TYPE" "APP WILD-TYPE" "APP WILD-TYPE" "APP WILD-TYPE" "APP WILD-TYPE" 
   TCGA-HZ-7919    TCGA-HZ-7922    TCGA-HZ-7923    TCGA-HZ-7924    TCGA-HZ-7925 
"APP WILD-TYPE" "APP WILD-TYPE" "APP WILD-TYPE" "APP WILD-TYPE"   "APP MUTATED" 
   TCGA-HZ-7926    TCGA-HZ-8001    TCGA-HZ-8002    TCGA-HZ-8003    TCGA-HZ-8005 
"APP WILD-TYPE"   "APP MUTATED" "APP WILD-TYPE"   "APP MUTATED" "APP WILD-TYPE" 
   TCGA-HZ-8315    TCGA-HZ-8317    TCGA-HZ-8636    TCGA-HZ-8638    TCGA-HZ-A49G 
"APP WILD-TYPE" "APP WILD-TYPE" "APP WILD-TYPE" "APP WILD-TYPE" "APP WILD-TYPE" 
   TCGA-HZ-A49H    TCGA-HZ-A4BH    TCGA-HZ-A4BK    TCGA-IB-7644    TCGA-IB-7645 
  "APP MUTATED" "APP WILD-TYPE" "APP WILD-TYPE" "APP WILD-TYPE" "APP WILD-TYPE" 
   TCGA-IB-7646    TCGA-IB-7647    TCGA-IB-7649    TCGA-IB-7651    TCGA-IB-7652 
"APP WILD-TYPE" "APP WILD-TYPE" "APP WILD-TYPE"   "APP MUTATED" "APP WILD-TYPE" 
   TCGA-IB-7885    TCGA-IB-7886    TCGA-IB-7887    TCGA-IB-7888    TCGA-IB-7889 
  "APP MUTATED" "APP WILD-TYPE" "APP WILD-TYPE" "APP WILD-TYPE" "APP WILD-TYPE" 
   TCGA-IB-7890    TCGA-IB-7891    TCGA-IB-7893    TCGA-IB-7897    TCGA-IB-8126 
"APP WILD-TYPE" "APP WILD-TYPE" "APP WILD-TYPE" "APP WILD-TYPE" "APP WILD-TYPE" 
   TCGA-IB-8127    TCGA-IB-A5SO    TCGA-IB-A5SP    TCGA-IB-A5SQ    TCGA-IB-A5SS 
"APP WILD-TYPE" "APP WILD-TYPE" "APP WILD-TYPE" "APP WILD-TYPE" "APP WILD-TYPE" 
   TCGA-IB-A5ST    TCGA-IB-A6UG    TCGA-LB-A7SX    TCGA-OE-A75W    TCGA-PZ-A5RE 
"APP WILD-TYPE" "APP WILD-TYPE"   "APP MUTATED" "APP WILD-TYPE" "APP WILD-TYPE" 
   TCGA-Q3-A5QY    TCGA-US-A779    TCGA-US-A77E    TCGA-US-A77J 
"APP WILD-TYPE" "APP WILD-TYPE" "APP WILD-TYPE" "APP WILD-TYPE" 
   TCGA-F2-6879    TCGA-F2-6880    TCGA-F2-7273    TCGA-F2-7276    TCGA-F2-A44G 
"APP WILD-TYPE" "APP WILD-TYPE" "APP WILD-TYPE" "APP WILD-TYPE" "APP WILD-TYPE" 
   TCGA-F2-A44H    TCGA-FB-A4P5    TCGA-FB-A4P6    TCGA-FB-A545    TCGA-FB-A5VM 
"APP WILD-TYPE" "APP WILD-TYPE"   "APP MUTATED" "APP WILD-TYPE" "APP WILD-TYPE" 
   TCGA-FB-A78T    TCGA-FB-A7DR    TCGA-FZ-5920    TCGA-FZ-5922    TCGA-FZ-5923 
"APP WILD-TYPE" "APP WILD-TYPE" "APP WILD-TYPE"   "APP MUTATED" "APP WILD-TYPE" 
   TCGA-H6-8124    TCGA-H6-A45N    TCGA-H8-A6C1    TCGA-HZ-7289    TCGA-HZ-7918 
"APP WILD-TYPE" "APP WILD-TYPE" "APP WILD-TYPE" "APP WILD-TYPE" "APP WILD-TYPE" 
   TCGA-HZ-7919    TCGA-HZ-7922    TCGA-HZ-7923    TCGA-HZ-7924    TCGA-HZ-7925 
"APP WILD-TYPE" "APP WILD-TYPE" "APP WILD-TYPE" "APP WILD-TYPE"   "APP MUTATED" 
   TCGA-HZ-7926    TCGA-HZ-8001    TCGA-HZ-8002    TCGA-HZ-8003    TCGA-HZ-8005 
"APP WILD-TYPE"   "APP MUTATED" "APP WILD-TYPE"   "APP MUTATED" "APP WILD-TYPE" 
   TCGA-HZ-8315    TCGA-HZ-8317    TCGA-HZ-8636    TCGA-HZ-8638    TCGA-HZ-A49G 
"APP WILD-TYPE" "APP WILD-TYPE" "APP WILD-TYPE" "APP WILD-TYPE" "APP WILD-TYPE" 
   TCGA-HZ-A49H    TCGA-HZ-A4BH    TCGA-HZ-A4BK    TCGA-IB-7644    TCGA-IB-7645 
  "APP MUTATED" "APP WILD-TYPE" "APP WILD-TYPE" "APP WILD-TYPE" "APP WILD-TYPE" 
   TCGA-IB-7646    TCGA-IB-7647    TCGA-IB-7649    TCGA-IB-7651    TCGA-IB-7652 
"APP WILD-TYPE" "APP WILD-TYPE" "APP WILD-TYPE"   "APP MUTATED" "APP WILD-TYPE" 
   TCGA-IB-7885    TCGA-IB-7886    TCGA-IB-7887    TCGA-IB-7888    TCGA-IB-7889 
  "APP MUTATED" "APP WILD-TYPE" "APP WILD-TYPE" "APP WILD-TYPE" "APP WILD-TYPE" 
   TCGA-IB-7890    TCGA-IB-7891    TCGA-IB-7893    TCGA-IB-7897    TCGA-IB-8126 
"APP WILD-TYPE" "APP WILD-TYPE" "APP WILD-TYPE" "APP WILD-TYPE" "APP WILD-TYPE" 
   TCGA-IB-8127    TCGA-IB-A5SO    TCGA-IB-A5SP    TCGA-IB-A5SQ    TCGA-IB-A5SS 
"APP WILD-TYPE" "APP WILD-TYPE" "APP WILD-TYPE" "APP WILD-TYPE" "APP WILD-TYPE" 
   TCGA-IB-A5ST    TCGA-IB-A6UG    TCGA-LB-A7SX    TCGA-OE-A75W    TCGA-PZ-A5RE 
"APP WILD-TYPE" "APP WILD-TYPE"   "APP MUTATED" "APP WILD-TYPE" "APP WILD-TYPE" 
   TCGA-Q3-A5QY    TCGA-US-A779    TCGA-US-A77E    TCGA-US-A77J 
"APP WILD-TYPE" "APP WILD-TYPE" "APP WILD-TYPE" "APP WILD-TYPE" 
   TCGA-F2-6879    TCGA-F2-6880    TCGA-F2-7273    TCGA-F2-7276    TCGA-F2-A44G 
"APP WILD-TYPE" "APP WILD-TYPE" "APP WILD-TYPE" "APP WILD-TYPE" "APP WILD-TYPE" 
   TCGA-F2-A44H    TCGA-FB-A4P5    TCGA-FB-A4P6    TCGA-FB-A545    TCGA-FB-A5VM 
"APP WILD-TYPE" "APP WILD-TYPE"   "APP MUTATED" "APP WILD-TYPE" "APP WILD-TYPE" 
   TCGA-FB-A78T    TCGA-FB-A7DR    TCGA-FZ-5920    TCGA-FZ-5922    TCGA-FZ-5923 
"APP WILD-TYPE" "APP WILD-TYPE" "APP WILD-TYPE"   "APP MUTATED" "APP WILD-TYPE" 
   TCGA-H6-8124    TCGA-H6-A45N    TCGA-H8-A6C1    TCGA-HZ-7289    TCGA-HZ-7918 
"APP WILD-TYPE" "APP WILD-TYPE" "APP WILD-TYPE" "APP WILD-TYPE" "APP WILD-TYPE" 
   TCGA-HZ-7919    TCGA-HZ-7922    TCGA-HZ-7923    TCGA-HZ-7924    TCGA-HZ-7925 
"APP WILD-TYPE" "APP WILD-TYPE" "APP WILD-TYPE" "APP WILD-TYPE"   "APP MUTATED" 
   TCGA-HZ-7926    TCGA-HZ-8001    TCGA-HZ-8002    TCGA-HZ-8003    TCGA-HZ-8005 
"APP WILD-TYPE"   "APP MUTATED" "APP WILD-TYPE"   "APP MUTATED" "APP WILD-TYPE" 
   TCGA-HZ-8315    TCGA-HZ-8317    TCGA-HZ-8636    TCGA-HZ-8638    TCGA-HZ-A49G 
"APP WILD-TYPE" "APP WILD-TYPE" "APP WILD-TYPE" "APP WILD-TYPE" "APP WILD-TYPE" 
   TCGA-HZ-A49H    TCGA-HZ-A4BH    TCGA-HZ-A4BK    TCGA-IB-7644    TCGA-IB-7645 
  "APP MUTATED" "APP WILD-TYPE" "APP WILD-TYPE" "APP WILD-TYPE" "APP WILD-TYPE" 
   TCGA-IB-7646    TCGA-IB-7647    TCGA-IB-7649    TCGA-IB-7651    TCGA-IB-7652 
"APP WILD-TYPE" "APP WILD-TYPE" "APP WILD-TYPE"   "APP MUTATED" "APP WILD-TYPE" 
   TCGA-IB-7885    TCGA-IB-7886    TCGA-IB-7887    TCGA-IB-7888    TCGA-IB-7889 
  "APP MUTATED" "APP WILD-TYPE" "APP WILD-TYPE" "APP WILD-TYPE" "APP WILD-TYPE" 
   TCGA-IB-7890    TCGA-IB-7891    TCGA-IB-7893    TCGA-IB-7897    TCGA-IB-8126 
"APP WILD-TYPE" "APP WILD-TYPE" "APP WILD-TYPE" "APP WILD-TYPE" "APP WILD-TYPE" 
   TCGA-IB-8127    TCGA-IB-A5SO    TCGA-IB-A5SP    TCGA-IB-A5SQ    TCGA-IB-A5SS 
"APP WILD-TYPE" "APP WILD-TYPE" "APP WILD-TYPE" "APP WILD-TYPE" "APP WILD-TYPE" 
   TCGA-IB-A5ST    TCGA-IB-A6UG    TCGA-LB-A7SX    TCGA-OE-A75W    TCGA-PZ-A5RE 
"APP WILD-TYPE" "APP WILD-TYPE"   "APP MUTATED" "APP WILD-TYPE" "APP WILD-TYPE" 
   TCGA-Q3-A5QY    TCGA-US-A779    TCGA-US-A77E    TCGA-US-A77J 
"APP WILD-TYPE" "APP WILD-TYPE" "APP WILD-TYPE" "APP WILD-TYPE" 
[1] "hr=" "3.3"
D6V2, continuous
               vv
clus            STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  APP MUTATED          0        0         1         8         1        0
  APP WILD-TYPE        1        4        10        43         1        3
D6V3, multiclass
               vv
clus            T1+T2 T3+T4
  APP MUTATED       0    10
  APP WILD-TYPE     6    56
D6V4, multiclass
       clus
vv      APP MUTATED APP WILD-TYPE
  T1+T2           0             6
  T3+T4          10            56
D6V5, binary
               cls
clus             0  1
  APP MUTATED    2  8
  APP WILD-TYPE 15 46
[1] "tbl2"
               cls
clus            [,1] [,2]
  APP MUTATED      2    8
  APP WILD-TYPE   15   46
   clus
vv  APP MUTATED APP WILD-TYPE
  0           2            15
  1           8            46
               vv
clus            M0 M1 MX
  APP MUTATED    3  0  7
  APP WILD-TYPE 36  3 23
D6V6, multiclass
    clus
vv   APP MUTATED APP WILD-TYPE
  M0           3            36
  M1           0             3
  MX           7            23
D6V7, binary
               cls
clus             0  1
  APP MUTATED    6  4
  APP WILD-TYPE 30 32
[1] "tbl2"
               cls
clus            [,1] [,2]
  APP MUTATED      6    4
  APP WILD-TYPE   30   32
        clus
vv       APP MUTATED APP WILD-TYPE
  FEMALE           6            30
  MALE             4            32
               vv
clus            PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  APP MUTATED                                    10
  APP WILD-TYPE                                  55
               vv
clus            PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  APP MUTATED                                       0
  APP WILD-TYPE                                     4
               vv
clus            PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  APP MUTATED                                                  0
  APP WILD-TYPE                                                2
D6V8, multiclass
                                                  clus
vv                                                 APP MUTATED APP WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                       10            55
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                      0             4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA           0             2
D6V9, continuous
D6V10, continuous
               vv
clus            R0 R1 RX
  APP MUTATED    8  1  0
  APP WILD-TYPE 34 23  2
D6V11, multiclass
    clus
vv   APP MUTATED APP WILD-TYPE
  R0           8            34
  R1           1            23
  RX           0             2
D6V12, continuous

Clustering(7) Variable = TMC4 MUTATION ANALYSIS
D7V1, survival
                sevent
clus2             0  1
  TMC4 MUTATED   11  6
  TMC4 WILD-TYPE 29 23
  TMC4 MUTATED TMC4 WILD-TYPE 
            17             52 
  TMC4 MUTATED TMC4 WILD-TYPE 
             6             23 
$`TMC4 MUTATED`
TCGA-F2-6879 TCGA-F2-7276 TCGA-F2-A44H TCGA-FB-A545 TCGA-FB-A7DR TCGA-HZ-7922 
       10.98         7.10        19.27        12.66         5.46         0.13 
TCGA-HZ-7923 TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8002 TCGA-HZ-8317 TCGA-HZ-A4BK 
        0.26        11.87         0.26         0.79         0.53         1.51 
TCGA-IB-7644 TCGA-IB-7646 TCGA-IB-7651 TCGA-IB-7887 TCGA-IB-8126 
       11.41         4.77        19.82         3.62         0.56 

$`TMC4 WILD-TYPE`
TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-A44G TCGA-FB-A4P5 TCGA-FB-A4P6 TCGA-FB-A5VM 
        9.70        11.84         5.03         0.13        11.93         2.47 
TCGA-FB-A78T TCGA-FZ-5920 TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N 
        0.03         2.01        36.20        20.81        12.89         7.66 
TCGA-H8-A6C1 TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7924 TCGA-HZ-8001 
       13.02         7.89         0.92         0.66        12.13         0.62 
TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G 
        0.69         3.95         0.92         0.16         2.99         0.76 
TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-IB-7645 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7652 
        0.95         6.38        49.38        21.90        15.35        15.65 
TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 
       27.98         4.04        43.79        15.81        19.66        16.04 
TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ 
        3.85        15.98        17.16        10.82         9.86         7.20 
TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W TCGA-PZ-A5RE 
       15.12         0.26         1.35         4.18         3.62         8.12 
TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
       13.68        16.80        14.14        18.67 

  TMC4 MUTATED TMC4 WILD-TYPE 
          0.13           0.03 
  TMC4 MUTATED TMC4 WILD-TYPE 
         19.82          49.38 
  TMC4 MUTATED TMC4 WILD-TYPE 
          4.77           8.91 
[1] "0.1 - 19.8 (4.8)" "0.0 - 49.4 (8.9)"
    TCGA-F2-6879     TCGA-F2-6880     TCGA-F2-7273     TCGA-F2-7276 
  "TMC4 MUTATED" "TMC4 WILD-TYPE" "TMC4 WILD-TYPE"   "TMC4 MUTATED" 
    TCGA-F2-A44G     TCGA-F2-A44H     TCGA-FB-A4P5     TCGA-FB-A4P6 
"TMC4 WILD-TYPE"   "TMC4 MUTATED" "TMC4 WILD-TYPE" "TMC4 WILD-TYPE" 
    TCGA-FB-A545     TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-FB-A7DR 
  "TMC4 MUTATED" "TMC4 WILD-TYPE" "TMC4 WILD-TYPE"   "TMC4 MUTATED" 
    TCGA-FZ-5920     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-H6-8124 
"TMC4 WILD-TYPE" "TMC4 WILD-TYPE" "TMC4 WILD-TYPE" "TMC4 WILD-TYPE" 
    TCGA-H6-A45N     TCGA-H8-A6C1     TCGA-HZ-7289     TCGA-HZ-7918 
"TMC4 WILD-TYPE" "TMC4 WILD-TYPE" "TMC4 WILD-TYPE" "TMC4 WILD-TYPE" 
    TCGA-HZ-7919     TCGA-HZ-7922     TCGA-HZ-7923     TCGA-HZ-7924 
"TMC4 WILD-TYPE"   "TMC4 MUTATED"   "TMC4 MUTATED" "TMC4 WILD-TYPE" 
    TCGA-HZ-7925     TCGA-HZ-7926     TCGA-HZ-8001     TCGA-HZ-8002 
  "TMC4 MUTATED"   "TMC4 MUTATED" "TMC4 WILD-TYPE"   "TMC4 MUTATED" 
    TCGA-HZ-8003     TCGA-HZ-8005     TCGA-HZ-8315     TCGA-HZ-8317 
"TMC4 WILD-TYPE" "TMC4 WILD-TYPE" "TMC4 WILD-TYPE"   "TMC4 MUTATED" 
    TCGA-HZ-8636     TCGA-HZ-8638     TCGA-HZ-A49G     TCGA-HZ-A49H 
"TMC4 WILD-TYPE" "TMC4 WILD-TYPE" "TMC4 WILD-TYPE" "TMC4 WILD-TYPE" 
    TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-IB-7644     TCGA-IB-7645 
"TMC4 WILD-TYPE"   "TMC4 MUTATED"   "TMC4 MUTATED" "TMC4 WILD-TYPE" 
    TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7651 
  "TMC4 MUTATED" "TMC4 WILD-TYPE" "TMC4 WILD-TYPE"   "TMC4 MUTATED" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887 
"TMC4 WILD-TYPE" "TMC4 WILD-TYPE" "TMC4 WILD-TYPE"   "TMC4 MUTATED" 
    TCGA-IB-7888     TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891 
"TMC4 WILD-TYPE" "TMC4 WILD-TYPE" "TMC4 WILD-TYPE" "TMC4 WILD-TYPE" 
    TCGA-IB-7893     TCGA-IB-7897     TCGA-IB-8126     TCGA-IB-8127 
"TMC4 WILD-TYPE" "TMC4 WILD-TYPE"   "TMC4 MUTATED" "TMC4 WILD-TYPE" 
    TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS 
"TMC4 WILD-TYPE" "TMC4 WILD-TYPE" "TMC4 WILD-TYPE" "TMC4 WILD-TYPE" 
    TCGA-IB-A5ST     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
"TMC4 WILD-TYPE" "TMC4 WILD-TYPE" "TMC4 WILD-TYPE" "TMC4 WILD-TYPE" 
    TCGA-PZ-A5RE     TCGA-Q3-A5QY     TCGA-US-A779     TCGA-US-A77E 
"TMC4 WILD-TYPE" "TMC4 WILD-TYPE" "TMC4 WILD-TYPE" "TMC4 WILD-TYPE" 
    TCGA-US-A77J 
"TMC4 WILD-TYPE" 
    TCGA-F2-6879     TCGA-F2-6880     TCGA-F2-7273     TCGA-F2-7276 
  "TMC4 MUTATED" "TMC4 WILD-TYPE" "TMC4 WILD-TYPE"   "TMC4 MUTATED" 
    TCGA-F2-A44G     TCGA-F2-A44H     TCGA-FB-A4P5     TCGA-FB-A4P6 
"TMC4 WILD-TYPE"   "TMC4 MUTATED" "TMC4 WILD-TYPE" "TMC4 WILD-TYPE" 
    TCGA-FB-A545     TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-FB-A7DR 
  "TMC4 MUTATED" "TMC4 WILD-TYPE" "TMC4 WILD-TYPE"   "TMC4 MUTATED" 
    TCGA-FZ-5920     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-H6-8124 
"TMC4 WILD-TYPE" "TMC4 WILD-TYPE" "TMC4 WILD-TYPE" "TMC4 WILD-TYPE" 
    TCGA-H6-A45N     TCGA-H8-A6C1     TCGA-HZ-7289     TCGA-HZ-7918 
"TMC4 WILD-TYPE" "TMC4 WILD-TYPE" "TMC4 WILD-TYPE" "TMC4 WILD-TYPE" 
    TCGA-HZ-7919     TCGA-HZ-7922     TCGA-HZ-7923     TCGA-HZ-7924 
"TMC4 WILD-TYPE"   "TMC4 MUTATED"   "TMC4 MUTATED" "TMC4 WILD-TYPE" 
    TCGA-HZ-7925     TCGA-HZ-7926     TCGA-HZ-8001     TCGA-HZ-8002 
  "TMC4 MUTATED"   "TMC4 MUTATED" "TMC4 WILD-TYPE"   "TMC4 MUTATED" 
    TCGA-HZ-8003     TCGA-HZ-8005     TCGA-HZ-8315     TCGA-HZ-8317 
"TMC4 WILD-TYPE" "TMC4 WILD-TYPE" "TMC4 WILD-TYPE"   "TMC4 MUTATED" 
    TCGA-HZ-8636     TCGA-HZ-8638     TCGA-HZ-A49G     TCGA-HZ-A49H 
"TMC4 WILD-TYPE" "TMC4 WILD-TYPE" "TMC4 WILD-TYPE" "TMC4 WILD-TYPE" 
    TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-IB-7644     TCGA-IB-7645 
"TMC4 WILD-TYPE"   "TMC4 MUTATED"   "TMC4 MUTATED" "TMC4 WILD-TYPE" 
    TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7651 
  "TMC4 MUTATED" "TMC4 WILD-TYPE" "TMC4 WILD-TYPE"   "TMC4 MUTATED" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887 
"TMC4 WILD-TYPE" "TMC4 WILD-TYPE" "TMC4 WILD-TYPE"   "TMC4 MUTATED" 
    TCGA-IB-7888     TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891 
"TMC4 WILD-TYPE" "TMC4 WILD-TYPE" "TMC4 WILD-TYPE" "TMC4 WILD-TYPE" 
    TCGA-IB-7893     TCGA-IB-7897     TCGA-IB-8126     TCGA-IB-8127 
"TMC4 WILD-TYPE" "TMC4 WILD-TYPE"   "TMC4 MUTATED" "TMC4 WILD-TYPE" 
    TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS 
"TMC4 WILD-TYPE" "TMC4 WILD-TYPE" "TMC4 WILD-TYPE" "TMC4 WILD-TYPE" 
    TCGA-IB-A5ST     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
"TMC4 WILD-TYPE" "TMC4 WILD-TYPE" "TMC4 WILD-TYPE" "TMC4 WILD-TYPE" 
    TCGA-PZ-A5RE     TCGA-Q3-A5QY     TCGA-US-A779     TCGA-US-A77E 
"TMC4 WILD-TYPE" "TMC4 WILD-TYPE" "TMC4 WILD-TYPE" "TMC4 WILD-TYPE" 
    TCGA-US-A77J 
"TMC4 WILD-TYPE" 
    TCGA-F2-6879     TCGA-F2-6880     TCGA-F2-7273     TCGA-F2-7276 
  "TMC4 MUTATED" "TMC4 WILD-TYPE" "TMC4 WILD-TYPE"   "TMC4 MUTATED" 
    TCGA-F2-A44G     TCGA-F2-A44H     TCGA-FB-A4P5     TCGA-FB-A4P6 
"TMC4 WILD-TYPE"   "TMC4 MUTATED" "TMC4 WILD-TYPE" "TMC4 WILD-TYPE" 
    TCGA-FB-A545     TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-FB-A7DR 
  "TMC4 MUTATED" "TMC4 WILD-TYPE" "TMC4 WILD-TYPE"   "TMC4 MUTATED" 
    TCGA-FZ-5920     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-H6-8124 
"TMC4 WILD-TYPE" "TMC4 WILD-TYPE" "TMC4 WILD-TYPE" "TMC4 WILD-TYPE" 
    TCGA-H6-A45N     TCGA-H8-A6C1     TCGA-HZ-7289     TCGA-HZ-7918 
"TMC4 WILD-TYPE" "TMC4 WILD-TYPE" "TMC4 WILD-TYPE" "TMC4 WILD-TYPE" 
    TCGA-HZ-7919     TCGA-HZ-7922     TCGA-HZ-7923     TCGA-HZ-7924 
"TMC4 WILD-TYPE"   "TMC4 MUTATED"   "TMC4 MUTATED" "TMC4 WILD-TYPE" 
    TCGA-HZ-7925     TCGA-HZ-7926     TCGA-HZ-8001     TCGA-HZ-8002 
  "TMC4 MUTATED"   "TMC4 MUTATED" "TMC4 WILD-TYPE"   "TMC4 MUTATED" 
    TCGA-HZ-8003     TCGA-HZ-8005     TCGA-HZ-8315     TCGA-HZ-8317 
"TMC4 WILD-TYPE" "TMC4 WILD-TYPE" "TMC4 WILD-TYPE"   "TMC4 MUTATED" 
    TCGA-HZ-8636     TCGA-HZ-8638     TCGA-HZ-A49G     TCGA-HZ-A49H 
"TMC4 WILD-TYPE" "TMC4 WILD-TYPE" "TMC4 WILD-TYPE" "TMC4 WILD-TYPE" 
    TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-IB-7644     TCGA-IB-7645 
"TMC4 WILD-TYPE"   "TMC4 MUTATED"   "TMC4 MUTATED" "TMC4 WILD-TYPE" 
    TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7651 
  "TMC4 MUTATED" "TMC4 WILD-TYPE" "TMC4 WILD-TYPE"   "TMC4 MUTATED" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887 
"TMC4 WILD-TYPE" "TMC4 WILD-TYPE" "TMC4 WILD-TYPE"   "TMC4 MUTATED" 
    TCGA-IB-7888     TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891 
"TMC4 WILD-TYPE" "TMC4 WILD-TYPE" "TMC4 WILD-TYPE" "TMC4 WILD-TYPE" 
    TCGA-IB-7893     TCGA-IB-7897     TCGA-IB-8126     TCGA-IB-8127 
"TMC4 WILD-TYPE" "TMC4 WILD-TYPE"   "TMC4 MUTATED" "TMC4 WILD-TYPE" 
    TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS 
"TMC4 WILD-TYPE" "TMC4 WILD-TYPE" "TMC4 WILD-TYPE" "TMC4 WILD-TYPE" 
    TCGA-IB-A5ST     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
"TMC4 WILD-TYPE" "TMC4 WILD-TYPE" "TMC4 WILD-TYPE" "TMC4 WILD-TYPE" 
    TCGA-PZ-A5RE     TCGA-Q3-A5QY     TCGA-US-A779     TCGA-US-A77E 
"TMC4 WILD-TYPE" "TMC4 WILD-TYPE" "TMC4 WILD-TYPE" "TMC4 WILD-TYPE" 
    TCGA-US-A77J 
"TMC4 WILD-TYPE" 
[1] "hr=" "1.6"
D7V2, continuous
                vv
clus             STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  TMC4 MUTATED          0        0         3        12         1        1
  TMC4 WILD-TYPE        1        4         8        39         1        2
D7V3, multiclass
                vv
clus             T1+T2 T3+T4
  TMC4 MUTATED       0    17
  TMC4 WILD-TYPE     6    49
D7V4, multiclass
       clus
vv      TMC4 MUTATED TMC4 WILD-TYPE
  T1+T2            0              6
  T3+T4           17             49
D7V5, binary
                cls
clus              0  1
  TMC4 MUTATED    2 14
  TMC4 WILD-TYPE 15 40
[1] "tbl2"
                cls
clus             [,1] [,2]
  TMC4 MUTATED      2   14
  TMC4 WILD-TYPE   15   40
   clus
vv  TMC4 MUTATED TMC4 WILD-TYPE
  0            2             15
  1           14             40
                vv
clus             M0 M1 MX
  TMC4 MUTATED    9  1  7
  TMC4 WILD-TYPE 30  2 23
D7V6, multiclass
    clus
vv   TMC4 MUTATED TMC4 WILD-TYPE
  M0            9             30
  M1            1              2
  MX            7             23
D7V7, binary
                cls
clus              0  1
  TMC4 MUTATED    7 10
  TMC4 WILD-TYPE 29 26
[1] "tbl2"
                cls
clus             [,1] [,2]
  TMC4 MUTATED      7   10
  TMC4 WILD-TYPE   29   26
        clus
vv       TMC4 MUTATED TMC4 WILD-TYPE
  FEMALE            7             29
  MALE             10             26
                vv
clus             PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  TMC4 MUTATED                                    14
  TMC4 WILD-TYPE                                  51
                vv
clus             PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  TMC4 MUTATED                                       1
  TMC4 WILD-TYPE                                     3
                vv
clus             PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  TMC4 MUTATED                                                  1
  TMC4 WILD-TYPE                                                1
D7V8, multiclass
                                                  clus
vv                                                 TMC4 MUTATED TMC4 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                        14             51
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                       1              3
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA            1              1
D7V9, continuous
D7V10, continuous
                vv
clus             R0 R1 RX
  TMC4 MUTATED    9  6  1
  TMC4 WILD-TYPE 33 18  1
D7V11, multiclass
    clus
vv   TMC4 MUTATED TMC4 WILD-TYPE
  R0            9             33
  R1            6             18
  RX            1              1
D7V12, continuous

Clustering(8) Variable = KIAA0020 MUTATION ANALYSIS
D8V1, survival
                    sevent
clus2                 0  1
  KIAA0020 MUTATED    3  1
  KIAA0020 WILD-TYPE 37 28
  KIAA0020 MUTATED KIAA0020 WILD-TYPE 
                 4                 65 
  KIAA0020 MUTATED KIAA0020 WILD-TYPE 
                 1                 28 
$`KIAA0020 MUTATED`
TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 
        0.62         0.79         0.69         3.95 

$`KIAA0020 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P5 TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR 
        0.13        11.93        12.66         2.47         0.03         5.46 
TCGA-FZ-5920 TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 
        2.01        36.20        20.81        12.89         7.66        13.02 
TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 
        7.89         0.92         0.66         0.13         0.26        12.13 
TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8636 TCGA-HZ-8638 
       11.87         0.26         0.92         0.53         0.16         2.99 
TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7645 
        0.76         0.95         6.38         1.51        11.41        49.38 
TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7651 TCGA-IB-7652 TCGA-IB-7885 
        4.77        21.90        15.35        19.82        15.65        27.98 
TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 
        4.04         3.62        43.79        15.81        19.66        16.04 
TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP 
        3.85        15.98         0.56        17.16        10.82         9.86 
TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W 
        7.20        15.12         0.26         1.35         4.18         3.62 
TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
        8.12        13.68        16.80        14.14        18.67 

  KIAA0020 MUTATED KIAA0020 WILD-TYPE 
              0.62               0.03 
  KIAA0020 MUTATED KIAA0020 WILD-TYPE 
              3.95              49.38 
  KIAA0020 MUTATED KIAA0020 WILD-TYPE 
              0.74               8.12 
[1] "0.6 - 4.0 (0.7)"  "0.0 - 49.4 (8.1)"
        TCGA-F2-6879         TCGA-F2-6880         TCGA-F2-7273 
"KIAA0020 WILD-TYPE" "KIAA0020 WILD-TYPE" "KIAA0020 WILD-TYPE" 
        TCGA-F2-7276         TCGA-F2-A44G         TCGA-F2-A44H 
"KIAA0020 WILD-TYPE" "KIAA0020 WILD-TYPE" "KIAA0020 WILD-TYPE" 
        TCGA-FB-A4P5         TCGA-FB-A4P6         TCGA-FB-A545 
"KIAA0020 WILD-TYPE" "KIAA0020 WILD-TYPE" "KIAA0020 WILD-TYPE" 
        TCGA-FB-A5VM         TCGA-FB-A78T         TCGA-FB-A7DR 
"KIAA0020 WILD-TYPE" "KIAA0020 WILD-TYPE" "KIAA0020 WILD-TYPE" 
        TCGA-FZ-5920         TCGA-FZ-5922         TCGA-FZ-5923 
"KIAA0020 WILD-TYPE" "KIAA0020 WILD-TYPE" "KIAA0020 WILD-TYPE" 
        TCGA-H6-8124         TCGA-H6-A45N         TCGA-H8-A6C1 
"KIAA0020 WILD-TYPE" "KIAA0020 WILD-TYPE" "KIAA0020 WILD-TYPE" 
        TCGA-HZ-7289         TCGA-HZ-7918         TCGA-HZ-7919 
"KIAA0020 WILD-TYPE" "KIAA0020 WILD-TYPE" "KIAA0020 WILD-TYPE" 
        TCGA-HZ-7922         TCGA-HZ-7923         TCGA-HZ-7924 
"KIAA0020 WILD-TYPE" "KIAA0020 WILD-TYPE" "KIAA0020 WILD-TYPE" 
        TCGA-HZ-7925         TCGA-HZ-7926         TCGA-HZ-8001 
"KIAA0020 WILD-TYPE" "KIAA0020 WILD-TYPE"   "KIAA0020 MUTATED" 
        TCGA-HZ-8002         TCGA-HZ-8003         TCGA-HZ-8005 
  "KIAA0020 MUTATED"   "KIAA0020 MUTATED"   "KIAA0020 MUTATED" 
        TCGA-HZ-8315         TCGA-HZ-8317         TCGA-HZ-8636 
"KIAA0020 WILD-TYPE" "KIAA0020 WILD-TYPE" "KIAA0020 WILD-TYPE" 
        TCGA-HZ-8638         TCGA-HZ-A49G         TCGA-HZ-A49H 
"KIAA0020 WILD-TYPE" "KIAA0020 WILD-TYPE" "KIAA0020 WILD-TYPE" 
        TCGA-HZ-A4BH         TCGA-HZ-A4BK         TCGA-IB-7644 
"KIAA0020 WILD-TYPE" "KIAA0020 WILD-TYPE" "KIAA0020 WILD-TYPE" 
        TCGA-IB-7645         TCGA-IB-7646         TCGA-IB-7647 
"KIAA0020 WILD-TYPE" "KIAA0020 WILD-TYPE" "KIAA0020 WILD-TYPE" 
        TCGA-IB-7649         TCGA-IB-7651         TCGA-IB-7652 
"KIAA0020 WILD-TYPE" "KIAA0020 WILD-TYPE" "KIAA0020 WILD-TYPE" 
        TCGA-IB-7885         TCGA-IB-7886         TCGA-IB-7887 
"KIAA0020 WILD-TYPE" "KIAA0020 WILD-TYPE" "KIAA0020 WILD-TYPE" 
        TCGA-IB-7888         TCGA-IB-7889         TCGA-IB-7890 
"KIAA0020 WILD-TYPE" "KIAA0020 WILD-TYPE" "KIAA0020 WILD-TYPE" 
        TCGA-IB-7891         TCGA-IB-7893         TCGA-IB-7897 
"KIAA0020 WILD-TYPE" "KIAA0020 WILD-TYPE" "KIAA0020 WILD-TYPE" 
        TCGA-IB-8126         TCGA-IB-8127         TCGA-IB-A5SO 
"KIAA0020 WILD-TYPE" "KIAA0020 WILD-TYPE" "KIAA0020 WILD-TYPE" 
        TCGA-IB-A5SP         TCGA-IB-A5SQ         TCGA-IB-A5SS 
"KIAA0020 WILD-TYPE" "KIAA0020 WILD-TYPE" "KIAA0020 WILD-TYPE" 
        TCGA-IB-A5ST         TCGA-IB-A6UG         TCGA-LB-A7SX 
"KIAA0020 WILD-TYPE" "KIAA0020 WILD-TYPE" "KIAA0020 WILD-TYPE" 
        TCGA-OE-A75W         TCGA-PZ-A5RE         TCGA-Q3-A5QY 
"KIAA0020 WILD-TYPE" "KIAA0020 WILD-TYPE" "KIAA0020 WILD-TYPE" 
        TCGA-US-A779         TCGA-US-A77E         TCGA-US-A77J 
"KIAA0020 WILD-TYPE" "KIAA0020 WILD-TYPE" "KIAA0020 WILD-TYPE" 
        TCGA-F2-6879         TCGA-F2-6880         TCGA-F2-7273 
"KIAA0020 WILD-TYPE" "KIAA0020 WILD-TYPE" "KIAA0020 WILD-TYPE" 
        TCGA-F2-7276         TCGA-F2-A44G         TCGA-F2-A44H 
"KIAA0020 WILD-TYPE" "KIAA0020 WILD-TYPE" "KIAA0020 WILD-TYPE" 
        TCGA-FB-A4P5         TCGA-FB-A4P6         TCGA-FB-A545 
"KIAA0020 WILD-TYPE" "KIAA0020 WILD-TYPE" "KIAA0020 WILD-TYPE" 
        TCGA-FB-A5VM         TCGA-FB-A78T         TCGA-FB-A7DR 
"KIAA0020 WILD-TYPE" "KIAA0020 WILD-TYPE" "KIAA0020 WILD-TYPE" 
        TCGA-FZ-5920         TCGA-FZ-5922         TCGA-FZ-5923 
"KIAA0020 WILD-TYPE" "KIAA0020 WILD-TYPE" "KIAA0020 WILD-TYPE" 
        TCGA-H6-8124         TCGA-H6-A45N         TCGA-H8-A6C1 
"KIAA0020 WILD-TYPE" "KIAA0020 WILD-TYPE" "KIAA0020 WILD-TYPE" 
        TCGA-HZ-7289         TCGA-HZ-7918         TCGA-HZ-7919 
"KIAA0020 WILD-TYPE" "KIAA0020 WILD-TYPE" "KIAA0020 WILD-TYPE" 
        TCGA-HZ-7922         TCGA-HZ-7923         TCGA-HZ-7924 
"KIAA0020 WILD-TYPE" "KIAA0020 WILD-TYPE" "KIAA0020 WILD-TYPE" 
        TCGA-HZ-7925         TCGA-HZ-7926         TCGA-HZ-8001 
"KIAA0020 WILD-TYPE" "KIAA0020 WILD-TYPE"   "KIAA0020 MUTATED" 
        TCGA-HZ-8002         TCGA-HZ-8003         TCGA-HZ-8005 
  "KIAA0020 MUTATED"   "KIAA0020 MUTATED"   "KIAA0020 MUTATED" 
        TCGA-HZ-8315         TCGA-HZ-8317         TCGA-HZ-8636 
"KIAA0020 WILD-TYPE" "KIAA0020 WILD-TYPE" "KIAA0020 WILD-TYPE" 
        TCGA-HZ-8638         TCGA-HZ-A49G         TCGA-HZ-A49H 
"KIAA0020 WILD-TYPE" "KIAA0020 WILD-TYPE" "KIAA0020 WILD-TYPE" 
        TCGA-HZ-A4BH         TCGA-HZ-A4BK         TCGA-IB-7644 
"KIAA0020 WILD-TYPE" "KIAA0020 WILD-TYPE" "KIAA0020 WILD-TYPE" 
        TCGA-IB-7645         TCGA-IB-7646         TCGA-IB-7647 
"KIAA0020 WILD-TYPE" "KIAA0020 WILD-TYPE" "KIAA0020 WILD-TYPE" 
        TCGA-IB-7649         TCGA-IB-7651         TCGA-IB-7652 
"KIAA0020 WILD-TYPE" "KIAA0020 WILD-TYPE" "KIAA0020 WILD-TYPE" 
        TCGA-IB-7885         TCGA-IB-7886         TCGA-IB-7887 
"KIAA0020 WILD-TYPE" "KIAA0020 WILD-TYPE" "KIAA0020 WILD-TYPE" 
        TCGA-IB-7888         TCGA-IB-7889         TCGA-IB-7890 
"KIAA0020 WILD-TYPE" "KIAA0020 WILD-TYPE" "KIAA0020 WILD-TYPE" 
        TCGA-IB-7891         TCGA-IB-7893         TCGA-IB-7897 
"KIAA0020 WILD-TYPE" "KIAA0020 WILD-TYPE" "KIAA0020 WILD-TYPE" 
        TCGA-IB-8126         TCGA-IB-8127         TCGA-IB-A5SO 
"KIAA0020 WILD-TYPE" "KIAA0020 WILD-TYPE" "KIAA0020 WILD-TYPE" 
        TCGA-IB-A5SP         TCGA-IB-A5SQ         TCGA-IB-A5SS 
"KIAA0020 WILD-TYPE" "KIAA0020 WILD-TYPE" "KIAA0020 WILD-TYPE" 
        TCGA-IB-A5ST         TCGA-IB-A6UG         TCGA-LB-A7SX 
"KIAA0020 WILD-TYPE" "KIAA0020 WILD-TYPE" "KIAA0020 WILD-TYPE" 
        TCGA-OE-A75W         TCGA-PZ-A5RE         TCGA-Q3-A5QY 
"KIAA0020 WILD-TYPE" "KIAA0020 WILD-TYPE" "KIAA0020 WILD-TYPE" 
        TCGA-US-A779         TCGA-US-A77E         TCGA-US-A77J 
"KIAA0020 WILD-TYPE" "KIAA0020 WILD-TYPE" "KIAA0020 WILD-TYPE" 
        TCGA-F2-6879         TCGA-F2-6880         TCGA-F2-7273 
"KIAA0020 WILD-TYPE" "KIAA0020 WILD-TYPE" "KIAA0020 WILD-TYPE" 
        TCGA-F2-7276         TCGA-F2-A44G         TCGA-F2-A44H 
"KIAA0020 WILD-TYPE" "KIAA0020 WILD-TYPE" "KIAA0020 WILD-TYPE" 
        TCGA-FB-A4P5         TCGA-FB-A4P6         TCGA-FB-A545 
"KIAA0020 WILD-TYPE" "KIAA0020 WILD-TYPE" "KIAA0020 WILD-TYPE" 
        TCGA-FB-A5VM         TCGA-FB-A78T         TCGA-FB-A7DR 
"KIAA0020 WILD-TYPE" "KIAA0020 WILD-TYPE" "KIAA0020 WILD-TYPE" 
        TCGA-FZ-5920         TCGA-FZ-5922         TCGA-FZ-5923 
"KIAA0020 WILD-TYPE" "KIAA0020 WILD-TYPE" "KIAA0020 WILD-TYPE" 
        TCGA-H6-8124         TCGA-H6-A45N         TCGA-H8-A6C1 
"KIAA0020 WILD-TYPE" "KIAA0020 WILD-TYPE" "KIAA0020 WILD-TYPE" 
        TCGA-HZ-7289         TCGA-HZ-7918         TCGA-HZ-7919 
"KIAA0020 WILD-TYPE" "KIAA0020 WILD-TYPE" "KIAA0020 WILD-TYPE" 
        TCGA-HZ-7922         TCGA-HZ-7923         TCGA-HZ-7924 
"KIAA0020 WILD-TYPE" "KIAA0020 WILD-TYPE" "KIAA0020 WILD-TYPE" 
        TCGA-HZ-7925         TCGA-HZ-7926         TCGA-HZ-8001 
"KIAA0020 WILD-TYPE" "KIAA0020 WILD-TYPE"   "KIAA0020 MUTATED" 
        TCGA-HZ-8002         TCGA-HZ-8003         TCGA-HZ-8005 
  "KIAA0020 MUTATED"   "KIAA0020 MUTATED"   "KIAA0020 MUTATED" 
        TCGA-HZ-8315         TCGA-HZ-8317         TCGA-HZ-8636 
"KIAA0020 WILD-TYPE" "KIAA0020 WILD-TYPE" "KIAA0020 WILD-TYPE" 
        TCGA-HZ-8638         TCGA-HZ-A49G         TCGA-HZ-A49H 
"KIAA0020 WILD-TYPE" "KIAA0020 WILD-TYPE" "KIAA0020 WILD-TYPE" 
        TCGA-HZ-A4BH         TCGA-HZ-A4BK         TCGA-IB-7644 
"KIAA0020 WILD-TYPE" "KIAA0020 WILD-TYPE" "KIAA0020 WILD-TYPE" 
        TCGA-IB-7645         TCGA-IB-7646         TCGA-IB-7647 
"KIAA0020 WILD-TYPE" "KIAA0020 WILD-TYPE" "KIAA0020 WILD-TYPE" 
        TCGA-IB-7649         TCGA-IB-7651         TCGA-IB-7652 
"KIAA0020 WILD-TYPE" "KIAA0020 WILD-TYPE" "KIAA0020 WILD-TYPE" 
        TCGA-IB-7885         TCGA-IB-7886         TCGA-IB-7887 
"KIAA0020 WILD-TYPE" "KIAA0020 WILD-TYPE" "KIAA0020 WILD-TYPE" 
        TCGA-IB-7888         TCGA-IB-7889         TCGA-IB-7890 
"KIAA0020 WILD-TYPE" "KIAA0020 WILD-TYPE" "KIAA0020 WILD-TYPE" 
        TCGA-IB-7891         TCGA-IB-7893         TCGA-IB-7897 
"KIAA0020 WILD-TYPE" "KIAA0020 WILD-TYPE" "KIAA0020 WILD-TYPE" 
        TCGA-IB-8126         TCGA-IB-8127         TCGA-IB-A5SO 
"KIAA0020 WILD-TYPE" "KIAA0020 WILD-TYPE" "KIAA0020 WILD-TYPE" 
        TCGA-IB-A5SP         TCGA-IB-A5SQ         TCGA-IB-A5SS 
"KIAA0020 WILD-TYPE" "KIAA0020 WILD-TYPE" "KIAA0020 WILD-TYPE" 
        TCGA-IB-A5ST         TCGA-IB-A6UG         TCGA-LB-A7SX 
"KIAA0020 WILD-TYPE" "KIAA0020 WILD-TYPE" "KIAA0020 WILD-TYPE" 
        TCGA-OE-A75W         TCGA-PZ-A5RE         TCGA-Q3-A5QY 
"KIAA0020 WILD-TYPE" "KIAA0020 WILD-TYPE" "KIAA0020 WILD-TYPE" 
        TCGA-US-A779         TCGA-US-A77E         TCGA-US-A77J 
"KIAA0020 WILD-TYPE" "KIAA0020 WILD-TYPE" "KIAA0020 WILD-TYPE" 
[1] "hr=" "7.4"
D8V2, continuous
                    vv
clus                 STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  KIAA0020 MUTATED          0        0         0         3         1        0
  KIAA0020 WILD-TYPE        1        4        11        48         1        3
D8V3, multiclass
                    vv
clus                 T1+T2 T3+T4
  KIAA0020 MUTATED       0     4
  KIAA0020 WILD-TYPE     6    62
D8V4, multiclass
       clus
vv      KIAA0020 MUTATED KIAA0020 WILD-TYPE
  T1+T2                0                  6
  T3+T4                4                 62
D8V5, binary
                    cls
clus                  0  1
  KIAA0020 MUTATED    1  3
  KIAA0020 WILD-TYPE 16 51
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  KIAA0020 MUTATED      1    3
  KIAA0020 WILD-TYPE   16   51
   clus
vv  KIAA0020 MUTATED KIAA0020 WILD-TYPE
  0                1                 16
  1                3                 51
                    vv
clus                 M0 M1 MX
  KIAA0020 MUTATED    0  0  4
  KIAA0020 WILD-TYPE 39  3 26
D8V6, multiclass
    clus
vv   KIAA0020 MUTATED KIAA0020 WILD-TYPE
  M0                0                 39
  M1                0                  3
  MX                4                 26
D8V7, binary
                    cls
clus                  0  1
  KIAA0020 MUTATED    1  3
  KIAA0020 WILD-TYPE 35 33
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  KIAA0020 MUTATED      1    3
  KIAA0020 WILD-TYPE   35   33
        clus
vv       KIAA0020 MUTATED KIAA0020 WILD-TYPE
  FEMALE                1                 35
  MALE                  3                 33
                    vv
clus                 PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  KIAA0020 MUTATED                                     4
  KIAA0020 WILD-TYPE                                  61
                    vv
clus                 PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  KIAA0020 MUTATED                                       0
  KIAA0020 WILD-TYPE                                     4
                    vv
clus                 PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  KIAA0020 MUTATED                                                  0
  KIAA0020 WILD-TYPE                                                2
D8V8, multiclass
                                                  clus
vv                                                 KIAA0020 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                             4
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                           0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                0
                                                  clus
vv                                                 KIAA0020 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                              61
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                             4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                  2
D8V9, continuous
D8V10, continuous
                    vv
clus                 R0 R1 RX
  KIAA0020 MUTATED    3  1  0
  KIAA0020 WILD-TYPE 39 23  2
D8V11, multiclass
    clus
vv   KIAA0020 MUTATED KIAA0020 WILD-TYPE
  R0                3                 39
  R1                1                 23
  RX                0                  2
D8V12, continuous

Clustering(9) Variable = BRDT MUTATION ANALYSIS
D9V1, survival
                sevent
clus2             0  1
  BRDT MUTATED    6 10
  BRDT WILD-TYPE 34 19
  BRDT MUTATED BRDT WILD-TYPE 
            16             53 
  BRDT MUTATED BRDT WILD-TYPE 
            10             19 
$`BRDT MUTATED`
TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44H TCGA-FB-A4P5 TCGA-FB-A4P6 TCGA-HZ-8003 
       11.84         7.10        19.27         0.13        11.93         0.69 
TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8638 TCGA-IB-7645 TCGA-IB-7649 
        3.95         0.92         0.53         2.99        49.38        15.35 
TCGA-IB-7651 TCGA-IB-7893 TCGA-IB-7897 TCGA-US-A77E 
       19.82         3.85        15.98        14.14 

$`BRDT WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-A44G TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T 
       10.98         9.70         5.03        12.66         2.47         0.03 
TCGA-FB-A7DR TCGA-FZ-5920 TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N 
        5.46         2.01        36.20        20.81        12.89         7.66 
TCGA-H8-A6C1 TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 
       13.02         7.89         0.92         0.66         0.13         0.26 
TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8636 
       12.13        11.87         0.26         0.62         0.79         0.16 
TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7646 
        0.76         0.95         6.38         1.51        11.41         4.77 
TCGA-IB-7647 TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7888 
       21.90        15.65        27.98         4.04         3.62        43.79 
TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO 
       15.81        19.66        16.04         0.56        17.16        10.82 
TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX 
        9.86         7.20        15.12         0.26         1.35         4.18 
TCGA-OE-A75W TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77J 
        3.62         8.12        13.68        16.80        18.67 

  BRDT MUTATED BRDT WILD-TYPE 
          0.13           0.03 
  BRDT MUTATED BRDT WILD-TYPE 
         49.38          43.79 
  BRDT MUTATED BRDT WILD-TYPE 
          9.47           7.66 
[1] "0.1 - 49.4 (9.5)" "0.0 - 43.8 (7.7)"
    TCGA-F2-6879     TCGA-F2-6880     TCGA-F2-7273     TCGA-F2-7276 
"BRDT WILD-TYPE" "BRDT WILD-TYPE"   "BRDT MUTATED"   "BRDT MUTATED" 
    TCGA-F2-A44G     TCGA-F2-A44H     TCGA-FB-A4P5     TCGA-FB-A4P6 
"BRDT WILD-TYPE"   "BRDT MUTATED"   "BRDT MUTATED"   "BRDT MUTATED" 
    TCGA-FB-A545     TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-FB-A7DR 
"BRDT WILD-TYPE" "BRDT WILD-TYPE" "BRDT WILD-TYPE" "BRDT WILD-TYPE" 
    TCGA-FZ-5920     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-H6-8124 
"BRDT WILD-TYPE" "BRDT WILD-TYPE" "BRDT WILD-TYPE" "BRDT WILD-TYPE" 
    TCGA-H6-A45N     TCGA-H8-A6C1     TCGA-HZ-7289     TCGA-HZ-7918 
"BRDT WILD-TYPE" "BRDT WILD-TYPE" "BRDT WILD-TYPE" "BRDT WILD-TYPE" 
    TCGA-HZ-7919     TCGA-HZ-7922     TCGA-HZ-7923     TCGA-HZ-7924 
"BRDT WILD-TYPE" "BRDT WILD-TYPE" "BRDT WILD-TYPE" "BRDT WILD-TYPE" 
    TCGA-HZ-7925     TCGA-HZ-7926     TCGA-HZ-8001     TCGA-HZ-8002 
"BRDT WILD-TYPE" "BRDT WILD-TYPE" "BRDT WILD-TYPE" "BRDT WILD-TYPE" 
    TCGA-HZ-8003     TCGA-HZ-8005     TCGA-HZ-8315     TCGA-HZ-8317 
  "BRDT MUTATED"   "BRDT MUTATED"   "BRDT MUTATED"   "BRDT MUTATED" 
    TCGA-HZ-8636     TCGA-HZ-8638     TCGA-HZ-A49G     TCGA-HZ-A49H 
"BRDT WILD-TYPE"   "BRDT MUTATED" "BRDT WILD-TYPE" "BRDT WILD-TYPE" 
    TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-IB-7644     TCGA-IB-7645 
"BRDT WILD-TYPE" "BRDT WILD-TYPE" "BRDT WILD-TYPE"   "BRDT MUTATED" 
    TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7651 
"BRDT WILD-TYPE" "BRDT WILD-TYPE"   "BRDT MUTATED"   "BRDT MUTATED" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887 
"BRDT WILD-TYPE" "BRDT WILD-TYPE" "BRDT WILD-TYPE" "BRDT WILD-TYPE" 
    TCGA-IB-7888     TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891 
"BRDT WILD-TYPE" "BRDT WILD-TYPE" "BRDT WILD-TYPE" "BRDT WILD-TYPE" 
    TCGA-IB-7893     TCGA-IB-7897     TCGA-IB-8126     TCGA-IB-8127 
  "BRDT MUTATED"   "BRDT MUTATED" "BRDT WILD-TYPE" "BRDT WILD-TYPE" 
    TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS 
"BRDT WILD-TYPE" "BRDT WILD-TYPE" "BRDT WILD-TYPE" "BRDT WILD-TYPE" 
    TCGA-IB-A5ST     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
"BRDT WILD-TYPE" "BRDT WILD-TYPE" "BRDT WILD-TYPE" "BRDT WILD-TYPE" 
    TCGA-PZ-A5RE     TCGA-Q3-A5QY     TCGA-US-A779     TCGA-US-A77E 
"BRDT WILD-TYPE" "BRDT WILD-TYPE" "BRDT WILD-TYPE"   "BRDT MUTATED" 
    TCGA-US-A77J 
"BRDT WILD-TYPE" 
    TCGA-F2-6879     TCGA-F2-6880     TCGA-F2-7273     TCGA-F2-7276 
"BRDT WILD-TYPE" "BRDT WILD-TYPE"   "BRDT MUTATED"   "BRDT MUTATED" 
    TCGA-F2-A44G     TCGA-F2-A44H     TCGA-FB-A4P5     TCGA-FB-A4P6 
"BRDT WILD-TYPE"   "BRDT MUTATED"   "BRDT MUTATED"   "BRDT MUTATED" 
    TCGA-FB-A545     TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-FB-A7DR 
"BRDT WILD-TYPE" "BRDT WILD-TYPE" "BRDT WILD-TYPE" "BRDT WILD-TYPE" 
    TCGA-FZ-5920     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-H6-8124 
"BRDT WILD-TYPE" "BRDT WILD-TYPE" "BRDT WILD-TYPE" "BRDT WILD-TYPE" 
    TCGA-H6-A45N     TCGA-H8-A6C1     TCGA-HZ-7289     TCGA-HZ-7918 
"BRDT WILD-TYPE" "BRDT WILD-TYPE" "BRDT WILD-TYPE" "BRDT WILD-TYPE" 
    TCGA-HZ-7919     TCGA-HZ-7922     TCGA-HZ-7923     TCGA-HZ-7924 
"BRDT WILD-TYPE" "BRDT WILD-TYPE" "BRDT WILD-TYPE" "BRDT WILD-TYPE" 
    TCGA-HZ-7925     TCGA-HZ-7926     TCGA-HZ-8001     TCGA-HZ-8002 
"BRDT WILD-TYPE" "BRDT WILD-TYPE" "BRDT WILD-TYPE" "BRDT WILD-TYPE" 
    TCGA-HZ-8003     TCGA-HZ-8005     TCGA-HZ-8315     TCGA-HZ-8317 
  "BRDT MUTATED"   "BRDT MUTATED"   "BRDT MUTATED"   "BRDT MUTATED" 
    TCGA-HZ-8636     TCGA-HZ-8638     TCGA-HZ-A49G     TCGA-HZ-A49H 
"BRDT WILD-TYPE"   "BRDT MUTATED" "BRDT WILD-TYPE" "BRDT WILD-TYPE" 
    TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-IB-7644     TCGA-IB-7645 
"BRDT WILD-TYPE" "BRDT WILD-TYPE" "BRDT WILD-TYPE"   "BRDT MUTATED" 
    TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7651 
"BRDT WILD-TYPE" "BRDT WILD-TYPE"   "BRDT MUTATED"   "BRDT MUTATED" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887 
"BRDT WILD-TYPE" "BRDT WILD-TYPE" "BRDT WILD-TYPE" "BRDT WILD-TYPE" 
    TCGA-IB-7888     TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891 
"BRDT WILD-TYPE" "BRDT WILD-TYPE" "BRDT WILD-TYPE" "BRDT WILD-TYPE" 
    TCGA-IB-7893     TCGA-IB-7897     TCGA-IB-8126     TCGA-IB-8127 
  "BRDT MUTATED"   "BRDT MUTATED" "BRDT WILD-TYPE" "BRDT WILD-TYPE" 
    TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS 
"BRDT WILD-TYPE" "BRDT WILD-TYPE" "BRDT WILD-TYPE" "BRDT WILD-TYPE" 
    TCGA-IB-A5ST     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
"BRDT WILD-TYPE" "BRDT WILD-TYPE" "BRDT WILD-TYPE" "BRDT WILD-TYPE" 
    TCGA-PZ-A5RE     TCGA-Q3-A5QY     TCGA-US-A779     TCGA-US-A77E 
"BRDT WILD-TYPE" "BRDT WILD-TYPE" "BRDT WILD-TYPE"   "BRDT MUTATED" 
    TCGA-US-A77J 
"BRDT WILD-TYPE" 
    TCGA-F2-6879     TCGA-F2-6880     TCGA-F2-7273     TCGA-F2-7276 
"BRDT WILD-TYPE" "BRDT WILD-TYPE"   "BRDT MUTATED"   "BRDT MUTATED" 
    TCGA-F2-A44G     TCGA-F2-A44H     TCGA-FB-A4P5     TCGA-FB-A4P6 
"BRDT WILD-TYPE"   "BRDT MUTATED"   "BRDT MUTATED"   "BRDT MUTATED" 
    TCGA-FB-A545     TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-FB-A7DR 
"BRDT WILD-TYPE" "BRDT WILD-TYPE" "BRDT WILD-TYPE" "BRDT WILD-TYPE" 
    TCGA-FZ-5920     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-H6-8124 
"BRDT WILD-TYPE" "BRDT WILD-TYPE" "BRDT WILD-TYPE" "BRDT WILD-TYPE" 
    TCGA-H6-A45N     TCGA-H8-A6C1     TCGA-HZ-7289     TCGA-HZ-7918 
"BRDT WILD-TYPE" "BRDT WILD-TYPE" "BRDT WILD-TYPE" "BRDT WILD-TYPE" 
    TCGA-HZ-7919     TCGA-HZ-7922     TCGA-HZ-7923     TCGA-HZ-7924 
"BRDT WILD-TYPE" "BRDT WILD-TYPE" "BRDT WILD-TYPE" "BRDT WILD-TYPE" 
    TCGA-HZ-7925     TCGA-HZ-7926     TCGA-HZ-8001     TCGA-HZ-8002 
"BRDT WILD-TYPE" "BRDT WILD-TYPE" "BRDT WILD-TYPE" "BRDT WILD-TYPE" 
    TCGA-HZ-8003     TCGA-HZ-8005     TCGA-HZ-8315     TCGA-HZ-8317 
  "BRDT MUTATED"   "BRDT MUTATED"   "BRDT MUTATED"   "BRDT MUTATED" 
    TCGA-HZ-8636     TCGA-HZ-8638     TCGA-HZ-A49G     TCGA-HZ-A49H 
"BRDT WILD-TYPE"   "BRDT MUTATED" "BRDT WILD-TYPE" "BRDT WILD-TYPE" 
    TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-IB-7644     TCGA-IB-7645 
"BRDT WILD-TYPE" "BRDT WILD-TYPE" "BRDT WILD-TYPE"   "BRDT MUTATED" 
    TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7651 
"BRDT WILD-TYPE" "BRDT WILD-TYPE"   "BRDT MUTATED"   "BRDT MUTATED" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887 
"BRDT WILD-TYPE" "BRDT WILD-TYPE" "BRDT WILD-TYPE" "BRDT WILD-TYPE" 
    TCGA-IB-7888     TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891 
"BRDT WILD-TYPE" "BRDT WILD-TYPE" "BRDT WILD-TYPE" "BRDT WILD-TYPE" 
    TCGA-IB-7893     TCGA-IB-7897     TCGA-IB-8126     TCGA-IB-8127 
  "BRDT MUTATED"   "BRDT MUTATED" "BRDT WILD-TYPE" "BRDT WILD-TYPE" 
    TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS 
"BRDT WILD-TYPE" "BRDT WILD-TYPE" "BRDT WILD-TYPE" "BRDT WILD-TYPE" 
    TCGA-IB-A5ST     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
"BRDT WILD-TYPE" "BRDT WILD-TYPE" "BRDT WILD-TYPE" "BRDT WILD-TYPE" 
    TCGA-PZ-A5RE     TCGA-Q3-A5QY     TCGA-US-A779     TCGA-US-A77E 
"BRDT WILD-TYPE" "BRDT WILD-TYPE" "BRDT WILD-TYPE"   "BRDT MUTATED" 
    TCGA-US-A77J 
"BRDT WILD-TYPE" 
[1] "hr=" "1.3"
D9V2, continuous
                vv
clus             STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  BRDT MUTATED          1        0         3        13         0        0
  BRDT WILD-TYPE        0        4         8        38         2        3
D9V3, multiclass
                vv
clus             T1+T2 T3+T4
  BRDT MUTATED       1    16
  BRDT WILD-TYPE     5    50
D9V4, multiclass
       clus
vv      BRDT MUTATED BRDT WILD-TYPE
  T1+T2            1              5
  T3+T4           16             50
D9V5, binary
                cls
clus              0  1
  BRDT MUTATED    4 13
  BRDT WILD-TYPE 13 41
[1] "tbl2"
                cls
clus             [,1] [,2]
  BRDT MUTATED      4   13
  BRDT WILD-TYPE   13   41
   clus
vv  BRDT MUTATED BRDT WILD-TYPE
  0            4             13
  1           13             41
                vv
clus             M0 M1 MX
  BRDT MUTATED    8  0  9
  BRDT WILD-TYPE 31  3 21
D9V6, multiclass
    clus
vv   BRDT MUTATED BRDT WILD-TYPE
  M0            8             31
  M1            0              3
  MX            9             21
D9V7, binary
                cls
clus              0  1
  BRDT MUTATED   10  7
  BRDT WILD-TYPE 26 29
[1] "tbl2"
                cls
clus             [,1] [,2]
  BRDT MUTATED     10    7
  BRDT WILD-TYPE   26   29
        clus
vv       BRDT MUTATED BRDT WILD-TYPE
  FEMALE           10             26
  MALE              7             29
                vv
clus             PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  BRDT MUTATED                                    16
  BRDT WILD-TYPE                                  49
                vv
clus             PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  BRDT MUTATED                                       0
  BRDT WILD-TYPE                                     4
                vv
clus             PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  BRDT MUTATED                                                  1
  BRDT WILD-TYPE                                                1
D9V8, multiclass
                                                  clus
vv                                                 BRDT MUTATED BRDT WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                        16             49
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                       0              4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA            1              1
D9V9, continuous
D9V10, continuous
                vv
clus             R0 R1 RX
  BRDT MUTATED   10  6  0
  BRDT WILD-TYPE 32 18  2
D9V11, multiclass
    clus
vv   BRDT MUTATED BRDT WILD-TYPE
  R0           10             32
  R1            6             18
  RX            0              2
D9V12, continuous

Clustering(10) Variable = SETD1A MUTATION ANALYSIS
D10V1, survival
                  sevent
clus2               0  1
  SETD1A MUTATED   10  5
  SETD1A WILD-TYPE 30 24
  SETD1A MUTATED SETD1A WILD-TYPE 
              15               54 
  SETD1A MUTATED SETD1A WILD-TYPE 
               5               24 
$`SETD1A MUTATED`
TCGA-F2-A44H TCGA-FB-A545 TCGA-FB-A5VM TCGA-H6-8124 TCGA-H6-A45N TCGA-HZ-7922 
       19.27        12.66         2.47        12.89         7.66         0.13 
TCGA-HZ-8001 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-IB-7644 TCGA-IB-7647 TCGA-IB-7887 
        0.62         0.76         0.95        11.41        21.90         3.62 
TCGA-IB-7888 TCGA-IB-7891 TCGA-IB-8127 
       43.79        16.04        17.16 

$`SETD1A WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-FB-A4P5 
       10.98         9.70        11.84         7.10         5.03         0.13 
TCGA-FB-A4P6 TCGA-FB-A78T TCGA-FB-A7DR TCGA-FZ-5920 TCGA-FZ-5922 TCGA-FZ-5923 
       11.93         0.03         5.46         2.01        36.20        20.81 
TCGA-H8-A6C1 TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7923 TCGA-HZ-7924 
       13.02         7.89         0.92         0.66         0.26        12.13 
TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 
       11.87         0.26         0.79         0.69         3.95         0.92 
TCGA-HZ-8317 TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7645 
        0.53         0.16         2.99         6.38         1.51        49.38 
TCGA-IB-7646 TCGA-IB-7649 TCGA-IB-7651 TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7886 
        4.77        15.35        19.82        15.65        27.98         4.04 
TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-A5SO 
       15.81        19.66         3.85        15.98         0.56        10.82 
TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX 
        9.86         7.20        15.12         0.26         1.35         4.18 
TCGA-OE-A75W TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
        3.62         8.12        13.68        16.80        14.14        18.67 

  SETD1A MUTATED SETD1A WILD-TYPE 
            0.13             0.03 
  SETD1A MUTATED SETD1A WILD-TYPE 
           43.79            49.38 
  SETD1A MUTATED SETD1A WILD-TYPE 
           11.41             7.15 
[1] "0.1 - 43.8 (11.4)" "0.0 - 49.4 (7.2)" 
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
"SETD1A WILD-TYPE" "SETD1A WILD-TYPE" "SETD1A WILD-TYPE" "SETD1A WILD-TYPE" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"SETD1A WILD-TYPE"   "SETD1A MUTATED" "SETD1A WILD-TYPE" "SETD1A WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
  "SETD1A MUTATED"   "SETD1A MUTATED" "SETD1A WILD-TYPE" "SETD1A WILD-TYPE" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"SETD1A WILD-TYPE" "SETD1A WILD-TYPE" "SETD1A WILD-TYPE"   "SETD1A MUTATED" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
  "SETD1A MUTATED" "SETD1A WILD-TYPE" "SETD1A WILD-TYPE" "SETD1A WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
"SETD1A WILD-TYPE"   "SETD1A MUTATED" "SETD1A WILD-TYPE" "SETD1A WILD-TYPE" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"SETD1A WILD-TYPE" "SETD1A WILD-TYPE"   "SETD1A MUTATED" "SETD1A WILD-TYPE" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
"SETD1A WILD-TYPE" "SETD1A WILD-TYPE" "SETD1A WILD-TYPE" "SETD1A WILD-TYPE" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
"SETD1A WILD-TYPE" "SETD1A WILD-TYPE"   "SETD1A MUTATED"   "SETD1A MUTATED" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
"SETD1A WILD-TYPE" "SETD1A WILD-TYPE"   "SETD1A MUTATED" "SETD1A WILD-TYPE" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
"SETD1A WILD-TYPE"   "SETD1A MUTATED" "SETD1A WILD-TYPE" "SETD1A WILD-TYPE" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
"SETD1A WILD-TYPE" "SETD1A WILD-TYPE" "SETD1A WILD-TYPE"   "SETD1A MUTATED" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
  "SETD1A MUTATED" "SETD1A WILD-TYPE" "SETD1A WILD-TYPE"   "SETD1A MUTATED" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
"SETD1A WILD-TYPE" "SETD1A WILD-TYPE" "SETD1A WILD-TYPE"   "SETD1A MUTATED" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"SETD1A WILD-TYPE" "SETD1A WILD-TYPE" "SETD1A WILD-TYPE" "SETD1A WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"SETD1A WILD-TYPE" "SETD1A WILD-TYPE" "SETD1A WILD-TYPE" "SETD1A WILD-TYPE" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
"SETD1A WILD-TYPE" "SETD1A WILD-TYPE" "SETD1A WILD-TYPE" "SETD1A WILD-TYPE" 
      TCGA-US-A77J 
"SETD1A WILD-TYPE" 
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
"SETD1A WILD-TYPE" "SETD1A WILD-TYPE" "SETD1A WILD-TYPE" "SETD1A WILD-TYPE" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"SETD1A WILD-TYPE"   "SETD1A MUTATED" "SETD1A WILD-TYPE" "SETD1A WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
  "SETD1A MUTATED"   "SETD1A MUTATED" "SETD1A WILD-TYPE" "SETD1A WILD-TYPE" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"SETD1A WILD-TYPE" "SETD1A WILD-TYPE" "SETD1A WILD-TYPE"   "SETD1A MUTATED" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
  "SETD1A MUTATED" "SETD1A WILD-TYPE" "SETD1A WILD-TYPE" "SETD1A WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
"SETD1A WILD-TYPE"   "SETD1A MUTATED" "SETD1A WILD-TYPE" "SETD1A WILD-TYPE" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"SETD1A WILD-TYPE" "SETD1A WILD-TYPE"   "SETD1A MUTATED" "SETD1A WILD-TYPE" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
"SETD1A WILD-TYPE" "SETD1A WILD-TYPE" "SETD1A WILD-TYPE" "SETD1A WILD-TYPE" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
"SETD1A WILD-TYPE" "SETD1A WILD-TYPE"   "SETD1A MUTATED"   "SETD1A MUTATED" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
"SETD1A WILD-TYPE" "SETD1A WILD-TYPE"   "SETD1A MUTATED" "SETD1A WILD-TYPE" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
"SETD1A WILD-TYPE"   "SETD1A MUTATED" "SETD1A WILD-TYPE" "SETD1A WILD-TYPE" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
"SETD1A WILD-TYPE" "SETD1A WILD-TYPE" "SETD1A WILD-TYPE"   "SETD1A MUTATED" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
  "SETD1A MUTATED" "SETD1A WILD-TYPE" "SETD1A WILD-TYPE"   "SETD1A MUTATED" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
"SETD1A WILD-TYPE" "SETD1A WILD-TYPE" "SETD1A WILD-TYPE"   "SETD1A MUTATED" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"SETD1A WILD-TYPE" "SETD1A WILD-TYPE" "SETD1A WILD-TYPE" "SETD1A WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"SETD1A WILD-TYPE" "SETD1A WILD-TYPE" "SETD1A WILD-TYPE" "SETD1A WILD-TYPE" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
"SETD1A WILD-TYPE" "SETD1A WILD-TYPE" "SETD1A WILD-TYPE" "SETD1A WILD-TYPE" 
      TCGA-US-A77J 
"SETD1A WILD-TYPE" 
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
"SETD1A WILD-TYPE" "SETD1A WILD-TYPE" "SETD1A WILD-TYPE" "SETD1A WILD-TYPE" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"SETD1A WILD-TYPE"   "SETD1A MUTATED" "SETD1A WILD-TYPE" "SETD1A WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
  "SETD1A MUTATED"   "SETD1A MUTATED" "SETD1A WILD-TYPE" "SETD1A WILD-TYPE" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"SETD1A WILD-TYPE" "SETD1A WILD-TYPE" "SETD1A WILD-TYPE"   "SETD1A MUTATED" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
  "SETD1A MUTATED" "SETD1A WILD-TYPE" "SETD1A WILD-TYPE" "SETD1A WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
"SETD1A WILD-TYPE"   "SETD1A MUTATED" "SETD1A WILD-TYPE" "SETD1A WILD-TYPE" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"SETD1A WILD-TYPE" "SETD1A WILD-TYPE"   "SETD1A MUTATED" "SETD1A WILD-TYPE" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
"SETD1A WILD-TYPE" "SETD1A WILD-TYPE" "SETD1A WILD-TYPE" "SETD1A WILD-TYPE" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
"SETD1A WILD-TYPE" "SETD1A WILD-TYPE"   "SETD1A MUTATED"   "SETD1A MUTATED" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
"SETD1A WILD-TYPE" "SETD1A WILD-TYPE"   "SETD1A MUTATED" "SETD1A WILD-TYPE" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
"SETD1A WILD-TYPE"   "SETD1A MUTATED" "SETD1A WILD-TYPE" "SETD1A WILD-TYPE" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
"SETD1A WILD-TYPE" "SETD1A WILD-TYPE" "SETD1A WILD-TYPE"   "SETD1A MUTATED" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
  "SETD1A MUTATED" "SETD1A WILD-TYPE" "SETD1A WILD-TYPE"   "SETD1A MUTATED" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
"SETD1A WILD-TYPE" "SETD1A WILD-TYPE" "SETD1A WILD-TYPE"   "SETD1A MUTATED" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"SETD1A WILD-TYPE" "SETD1A WILD-TYPE" "SETD1A WILD-TYPE" "SETD1A WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"SETD1A WILD-TYPE" "SETD1A WILD-TYPE" "SETD1A WILD-TYPE" "SETD1A WILD-TYPE" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
"SETD1A WILD-TYPE" "SETD1A WILD-TYPE" "SETD1A WILD-TYPE" "SETD1A WILD-TYPE" 
      TCGA-US-A77J 
"SETD1A WILD-TYPE" 
[1] "hr=" "1.8"
D10V2, continuous
                  vv
clus               STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  SETD1A MUTATED          0        1         2        10         1        1
  SETD1A WILD-TYPE        1        3         9        41         1        2
D10V3, multiclass
                  vv
clus               T1+T2 T3+T4
  SETD1A MUTATED       2    13
  SETD1A WILD-TYPE     4    53
D10V4, multiclass
       clus
vv      SETD1A MUTATED SETD1A WILD-TYPE
  T1+T2              2                4
  T3+T4             13               53
D10V5, binary
                  cls
clus                0  1
  SETD1A MUTATED    4 11
  SETD1A WILD-TYPE 13 43
[1] "tbl2"
                  cls
clus               [,1] [,2]
  SETD1A MUTATED      4   11
  SETD1A WILD-TYPE   13   43
   clus
vv  SETD1A MUTATED SETD1A WILD-TYPE
  0              4               13
  1             11               43
                  vv
clus               M0 M1 MX
  SETD1A MUTATED    9  1  5
  SETD1A WILD-TYPE 30  2 25
D10V6, multiclass
    clus
vv   SETD1A MUTATED SETD1A WILD-TYPE
  M0              9               30
  M1              1                2
  MX              5               25
D10V7, binary
                  cls
clus                0  1
  SETD1A MUTATED   10  5
  SETD1A WILD-TYPE 26 31
[1] "tbl2"
                  cls
clus               [,1] [,2]
  SETD1A MUTATED     10    5
  SETD1A WILD-TYPE   26   31
        clus
vv       SETD1A MUTATED SETD1A WILD-TYPE
  FEMALE             10               26
  MALE                5               31
                  vv
clus               PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  SETD1A MUTATED                                    14
  SETD1A WILD-TYPE                                  51
                  vv
clus               PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  SETD1A MUTATED                                       1
  SETD1A WILD-TYPE                                     3
                  vv
clus               PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  SETD1A MUTATED                                                  0
  SETD1A WILD-TYPE                                                2
D10V8, multiclass
                                                  clus
vv                                                 SETD1A MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                          14
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                         1
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA              0
                                                  clus
vv                                                 SETD1A WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                            51
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                           3
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                2
D10V9, continuous
D10V10, continuous
                  vv
clus               R0 R1 RX
  SETD1A MUTATED    8  5  0
  SETD1A WILD-TYPE 34 19  2
D10V11, multiclass
    clus
vv   SETD1A MUTATED SETD1A WILD-TYPE
  R0              8               34
  R1              5               19
  RX              0                2
D10V12, continuous

Clustering(11) Variable = SEH1L MUTATION ANALYSIS
D11V1, survival
                 sevent
clus2              0  1
  SEH1L MUTATED   10  5
  SEH1L WILD-TYPE 30 24
  SEH1L MUTATED SEH1L WILD-TYPE 
             15              54 
  SEH1L MUTATED SEH1L WILD-TYPE 
              5              24 
$`SEH1L MUTATED`
TCGA-FB-A4P6 TCGA-H6-A45N TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-7923 TCGA-HZ-7926 
       11.93         7.66         7.89         0.92         0.26         0.26 
TCGA-HZ-8003 TCGA-HZ-8638 TCGA-HZ-A49G TCGA-IB-7647 TCGA-IB-7651 TCGA-IB-7891 
        0.69         2.99         0.76        21.90        19.82        16.04 
TCGA-IB-7893 TCGA-IB-7897 TCGA-PZ-A5RE 
        3.85        15.98         8.12 

$`SEH1L WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P5 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR TCGA-FZ-5920 
        0.13        12.66         2.47         0.03         5.46         2.01 
TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 TCGA-H8-A6C1 TCGA-HZ-7919 TCGA-HZ-7922 
       36.20        20.81        12.89        13.02         0.66         0.13 
TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8005 TCGA-HZ-8315 
       12.13        11.87         0.62         0.79         3.95         0.92 
TCGA-HZ-8317 TCGA-HZ-8636 TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 
        0.53         0.16         0.95         6.38         1.51        11.41 
TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7649 TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7886 
       49.38         4.77        15.35        15.65        27.98         4.04 
TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-8126 TCGA-IB-8127 
        3.62        43.79        15.81        19.66         0.56        17.16 
TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG 
       10.82         9.86         7.20        15.12         0.26         1.35 
TCGA-LB-A7SX TCGA-OE-A75W TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
        4.18         3.62        13.68        16.80        14.14        18.67 

  SEH1L MUTATED SEH1L WILD-TYPE 
           0.26            0.03 
  SEH1L MUTATED SEH1L WILD-TYPE 
          21.90           49.38 
  SEH1L MUTATED SEH1L WILD-TYPE 
           7.66            8.45 
[1] "0.3 - 21.9 (7.7)" "0.0 - 49.4 (8.4)"
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"SEH1L WILD-TYPE" "SEH1L WILD-TYPE" "SEH1L WILD-TYPE" "SEH1L WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"SEH1L WILD-TYPE" "SEH1L WILD-TYPE" "SEH1L WILD-TYPE"   "SEH1L MUTATED" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"SEH1L WILD-TYPE" "SEH1L WILD-TYPE" "SEH1L WILD-TYPE" "SEH1L WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"SEH1L WILD-TYPE" "SEH1L WILD-TYPE" "SEH1L WILD-TYPE" "SEH1L WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
  "SEH1L MUTATED" "SEH1L WILD-TYPE"   "SEH1L MUTATED"   "SEH1L MUTATED" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"SEH1L WILD-TYPE" "SEH1L WILD-TYPE"   "SEH1L MUTATED" "SEH1L WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"SEH1L WILD-TYPE"   "SEH1L MUTATED" "SEH1L WILD-TYPE" "SEH1L WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
  "SEH1L MUTATED" "SEH1L WILD-TYPE" "SEH1L WILD-TYPE" "SEH1L WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"SEH1L WILD-TYPE"   "SEH1L MUTATED"   "SEH1L MUTATED" "SEH1L WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"SEH1L WILD-TYPE" "SEH1L WILD-TYPE" "SEH1L WILD-TYPE" "SEH1L WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"SEH1L WILD-TYPE"   "SEH1L MUTATED" "SEH1L WILD-TYPE"   "SEH1L MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"SEH1L WILD-TYPE" "SEH1L WILD-TYPE" "SEH1L WILD-TYPE" "SEH1L WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"SEH1L WILD-TYPE" "SEH1L WILD-TYPE" "SEH1L WILD-TYPE"   "SEH1L MUTATED" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
  "SEH1L MUTATED"   "SEH1L MUTATED" "SEH1L WILD-TYPE" "SEH1L WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"SEH1L WILD-TYPE" "SEH1L WILD-TYPE" "SEH1L WILD-TYPE" "SEH1L WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"SEH1L WILD-TYPE" "SEH1L WILD-TYPE" "SEH1L WILD-TYPE" "SEH1L WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
  "SEH1L MUTATED" "SEH1L WILD-TYPE" "SEH1L WILD-TYPE" "SEH1L WILD-TYPE" 
     TCGA-US-A77J 
"SEH1L WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"SEH1L WILD-TYPE" "SEH1L WILD-TYPE" "SEH1L WILD-TYPE" "SEH1L WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"SEH1L WILD-TYPE" "SEH1L WILD-TYPE" "SEH1L WILD-TYPE"   "SEH1L MUTATED" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"SEH1L WILD-TYPE" "SEH1L WILD-TYPE" "SEH1L WILD-TYPE" "SEH1L WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"SEH1L WILD-TYPE" "SEH1L WILD-TYPE" "SEH1L WILD-TYPE" "SEH1L WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
  "SEH1L MUTATED" "SEH1L WILD-TYPE"   "SEH1L MUTATED"   "SEH1L MUTATED" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"SEH1L WILD-TYPE" "SEH1L WILD-TYPE"   "SEH1L MUTATED" "SEH1L WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"SEH1L WILD-TYPE"   "SEH1L MUTATED" "SEH1L WILD-TYPE" "SEH1L WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
  "SEH1L MUTATED" "SEH1L WILD-TYPE" "SEH1L WILD-TYPE" "SEH1L WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"SEH1L WILD-TYPE"   "SEH1L MUTATED"   "SEH1L MUTATED" "SEH1L WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"SEH1L WILD-TYPE" "SEH1L WILD-TYPE" "SEH1L WILD-TYPE" "SEH1L WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"SEH1L WILD-TYPE"   "SEH1L MUTATED" "SEH1L WILD-TYPE"   "SEH1L MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"SEH1L WILD-TYPE" "SEH1L WILD-TYPE" "SEH1L WILD-TYPE" "SEH1L WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"SEH1L WILD-TYPE" "SEH1L WILD-TYPE" "SEH1L WILD-TYPE"   "SEH1L MUTATED" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
  "SEH1L MUTATED"   "SEH1L MUTATED" "SEH1L WILD-TYPE" "SEH1L WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"SEH1L WILD-TYPE" "SEH1L WILD-TYPE" "SEH1L WILD-TYPE" "SEH1L WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"SEH1L WILD-TYPE" "SEH1L WILD-TYPE" "SEH1L WILD-TYPE" "SEH1L WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
  "SEH1L MUTATED" "SEH1L WILD-TYPE" "SEH1L WILD-TYPE" "SEH1L WILD-TYPE" 
     TCGA-US-A77J 
"SEH1L WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"SEH1L WILD-TYPE" "SEH1L WILD-TYPE" "SEH1L WILD-TYPE" "SEH1L WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"SEH1L WILD-TYPE" "SEH1L WILD-TYPE" "SEH1L WILD-TYPE"   "SEH1L MUTATED" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"SEH1L WILD-TYPE" "SEH1L WILD-TYPE" "SEH1L WILD-TYPE" "SEH1L WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"SEH1L WILD-TYPE" "SEH1L WILD-TYPE" "SEH1L WILD-TYPE" "SEH1L WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
  "SEH1L MUTATED" "SEH1L WILD-TYPE"   "SEH1L MUTATED"   "SEH1L MUTATED" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"SEH1L WILD-TYPE" "SEH1L WILD-TYPE"   "SEH1L MUTATED" "SEH1L WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"SEH1L WILD-TYPE"   "SEH1L MUTATED" "SEH1L WILD-TYPE" "SEH1L WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
  "SEH1L MUTATED" "SEH1L WILD-TYPE" "SEH1L WILD-TYPE" "SEH1L WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"SEH1L WILD-TYPE"   "SEH1L MUTATED"   "SEH1L MUTATED" "SEH1L WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"SEH1L WILD-TYPE" "SEH1L WILD-TYPE" "SEH1L WILD-TYPE" "SEH1L WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"SEH1L WILD-TYPE"   "SEH1L MUTATED" "SEH1L WILD-TYPE"   "SEH1L MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"SEH1L WILD-TYPE" "SEH1L WILD-TYPE" "SEH1L WILD-TYPE" "SEH1L WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"SEH1L WILD-TYPE" "SEH1L WILD-TYPE" "SEH1L WILD-TYPE"   "SEH1L MUTATED" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
  "SEH1L MUTATED"   "SEH1L MUTATED" "SEH1L WILD-TYPE" "SEH1L WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"SEH1L WILD-TYPE" "SEH1L WILD-TYPE" "SEH1L WILD-TYPE" "SEH1L WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"SEH1L WILD-TYPE" "SEH1L WILD-TYPE" "SEH1L WILD-TYPE" "SEH1L WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
  "SEH1L MUTATED" "SEH1L WILD-TYPE" "SEH1L WILD-TYPE" "SEH1L WILD-TYPE" 
     TCGA-US-A77J 
"SEH1L WILD-TYPE" 
[1] "hr=" "1.1"
D11V2, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  SEH1L MUTATED          1        1         2        12         0        0
  SEH1L WILD-TYPE        0        3         9        39         2        3
D11V3, multiclass
                 vv
clus              T1+T2 T3+T4
  SEH1L MUTATED       3    13
  SEH1L WILD-TYPE     3    53
D11V4, multiclass
       clus
vv      SEH1L MUTATED SEH1L WILD-TYPE
  T1+T2             3               3
  T3+T4            13              53
D11V5, binary
                 cls
clus               0  1
  SEH1L MUTATED    4 12
  SEH1L WILD-TYPE 13 42
[1] "tbl2"
                 cls
clus              [,1] [,2]
  SEH1L MUTATED      4   12
  SEH1L WILD-TYPE   13   42
   clus
vv  SEH1L MUTATED SEH1L WILD-TYPE
  0             4              13
  1            12              42
                 vv
clus              M0 M1 MX
  SEH1L MUTATED    6  0 10
  SEH1L WILD-TYPE 33  3 20
D11V6, multiclass
    clus
vv   SEH1L MUTATED SEH1L WILD-TYPE
  M0             6              33
  M1             0               3
  MX            10              20
D11V7, binary
                 cls
clus               0  1
  SEH1L MUTATED    8  8
  SEH1L WILD-TYPE 28 28
[1] "tbl2"
                 cls
clus              [,1] [,2]
  SEH1L MUTATED      8    8
  SEH1L WILD-TYPE   28   28
        clus
vv       SEH1L MUTATED SEH1L WILD-TYPE
  FEMALE             8              28
  MALE               8              28
                 vv
clus              PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  SEH1L MUTATED                                    13
  SEH1L WILD-TYPE                                  52
                 vv
clus              PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  SEH1L MUTATED                                       2
  SEH1L WILD-TYPE                                     2
                 vv
clus              PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  SEH1L MUTATED                                                  1
  SEH1L WILD-TYPE                                                1
D11V8, multiclass
                                                  clus
vv                                                 SEH1L MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                         13
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                        2
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA             1
                                                  clus
vv                                                 SEH1L WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                           52
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                          2
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA               1
D11V9, continuous
D11V10, continuous
                 vv
clus              R0 R1 RX
  SEH1L MUTATED    9  2  2
  SEH1L WILD-TYPE 33 22  0
D11V11, multiclass
    clus
vv   SEH1L MUTATED SEH1L WILD-TYPE
  R0             9              33
  R1             2              22
  RX             2               0
D11V12, continuous

Clustering(12) Variable = IRS1 MUTATION ANALYSIS
D12V1, survival
                sevent
clus2             0  1
  IRS1 MUTATED    5  6
  IRS1 WILD-TYPE 35 23
  IRS1 MUTATED IRS1 WILD-TYPE 
            11             58 
  IRS1 MUTATED IRS1 WILD-TYPE 
             6             23 
$`IRS1 MUTATED`
TCGA-F2-6879 TCGA-F2-7273 TCGA-FB-A4P5 TCGA-FB-A4P6 TCGA-FB-A545 TCGA-HZ-8636 
       10.98        11.84         0.13        11.93        12.66         0.16 
TCGA-HZ-A49H TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-A5SP TCGA-US-A77E 
        0.95        49.38         4.77         9.86        14.14 

$`IRS1 WILD-TYPE`
TCGA-F2-6880 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H TCGA-FB-A5VM TCGA-FB-A78T 
        9.70         7.10         5.03        19.27         2.47         0.03 
TCGA-FB-A7DR TCGA-FZ-5920 TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N 
        5.46         2.01        36.20        20.81        12.89         7.66 
TCGA-H8-A6C1 TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 
       13.02         7.89         0.92         0.66         0.13         0.26 
TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 
       12.13        11.87         0.26         0.62         0.79         0.69 
TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A4BH 
        3.95         0.92         0.53         2.99         0.76         6.38 
TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7651 TCGA-IB-7652 
        1.51        11.41        21.90        15.35        19.82        15.65 
TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 
       27.98         4.04         3.62        43.79        15.81        19.66 
TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO 
       16.04         3.85        15.98         0.56        17.16        10.82 
TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W 
        7.20        15.12         0.26         1.35         4.18         3.62 
TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77J 
        8.12        13.68        16.80        18.67 

  IRS1 MUTATED IRS1 WILD-TYPE 
          0.13           0.03 
  IRS1 MUTATED IRS1 WILD-TYPE 
         49.38          43.79 
  IRS1 MUTATED IRS1 WILD-TYPE 
         10.98           7.15 
[1] "0.1 - 49.4 (11.0)" "0.0 - 43.8 (7.2)" 
    TCGA-F2-6879     TCGA-F2-6880     TCGA-F2-7273     TCGA-F2-7276 
  "IRS1 MUTATED" "IRS1 WILD-TYPE"   "IRS1 MUTATED" "IRS1 WILD-TYPE" 
    TCGA-F2-A44G     TCGA-F2-A44H     TCGA-FB-A4P5     TCGA-FB-A4P6 
"IRS1 WILD-TYPE" "IRS1 WILD-TYPE"   "IRS1 MUTATED"   "IRS1 MUTATED" 
    TCGA-FB-A545     TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-FB-A7DR 
  "IRS1 MUTATED" "IRS1 WILD-TYPE" "IRS1 WILD-TYPE" "IRS1 WILD-TYPE" 
    TCGA-FZ-5920     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-H6-8124 
"IRS1 WILD-TYPE" "IRS1 WILD-TYPE" "IRS1 WILD-TYPE" "IRS1 WILD-TYPE" 
    TCGA-H6-A45N     TCGA-H8-A6C1     TCGA-HZ-7289     TCGA-HZ-7918 
"IRS1 WILD-TYPE" "IRS1 WILD-TYPE" "IRS1 WILD-TYPE" "IRS1 WILD-TYPE" 
    TCGA-HZ-7919     TCGA-HZ-7922     TCGA-HZ-7923     TCGA-HZ-7924 
"IRS1 WILD-TYPE" "IRS1 WILD-TYPE" "IRS1 WILD-TYPE" "IRS1 WILD-TYPE" 
    TCGA-HZ-7925     TCGA-HZ-7926     TCGA-HZ-8001     TCGA-HZ-8002 
"IRS1 WILD-TYPE" "IRS1 WILD-TYPE" "IRS1 WILD-TYPE" "IRS1 WILD-TYPE" 
    TCGA-HZ-8003     TCGA-HZ-8005     TCGA-HZ-8315     TCGA-HZ-8317 
"IRS1 WILD-TYPE" "IRS1 WILD-TYPE" "IRS1 WILD-TYPE" "IRS1 WILD-TYPE" 
    TCGA-HZ-8636     TCGA-HZ-8638     TCGA-HZ-A49G     TCGA-HZ-A49H 
  "IRS1 MUTATED" "IRS1 WILD-TYPE" "IRS1 WILD-TYPE"   "IRS1 MUTATED" 
    TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-IB-7644     TCGA-IB-7645 
"IRS1 WILD-TYPE" "IRS1 WILD-TYPE" "IRS1 WILD-TYPE"   "IRS1 MUTATED" 
    TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7651 
  "IRS1 MUTATED" "IRS1 WILD-TYPE" "IRS1 WILD-TYPE" "IRS1 WILD-TYPE" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887 
"IRS1 WILD-TYPE" "IRS1 WILD-TYPE" "IRS1 WILD-TYPE" "IRS1 WILD-TYPE" 
    TCGA-IB-7888     TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891 
"IRS1 WILD-TYPE" "IRS1 WILD-TYPE" "IRS1 WILD-TYPE" "IRS1 WILD-TYPE" 
    TCGA-IB-7893     TCGA-IB-7897     TCGA-IB-8126     TCGA-IB-8127 
"IRS1 WILD-TYPE" "IRS1 WILD-TYPE" "IRS1 WILD-TYPE" "IRS1 WILD-TYPE" 
    TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS 
"IRS1 WILD-TYPE"   "IRS1 MUTATED" "IRS1 WILD-TYPE" "IRS1 WILD-TYPE" 
    TCGA-IB-A5ST     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
"IRS1 WILD-TYPE" "IRS1 WILD-TYPE" "IRS1 WILD-TYPE" "IRS1 WILD-TYPE" 
    TCGA-PZ-A5RE     TCGA-Q3-A5QY     TCGA-US-A779     TCGA-US-A77E 
"IRS1 WILD-TYPE" "IRS1 WILD-TYPE" "IRS1 WILD-TYPE"   "IRS1 MUTATED" 
    TCGA-US-A77J 
"IRS1 WILD-TYPE" 
    TCGA-F2-6879     TCGA-F2-6880     TCGA-F2-7273     TCGA-F2-7276 
  "IRS1 MUTATED" "IRS1 WILD-TYPE"   "IRS1 MUTATED" "IRS1 WILD-TYPE" 
    TCGA-F2-A44G     TCGA-F2-A44H     TCGA-FB-A4P5     TCGA-FB-A4P6 
"IRS1 WILD-TYPE" "IRS1 WILD-TYPE"   "IRS1 MUTATED"   "IRS1 MUTATED" 
    TCGA-FB-A545     TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-FB-A7DR 
  "IRS1 MUTATED" "IRS1 WILD-TYPE" "IRS1 WILD-TYPE" "IRS1 WILD-TYPE" 
    TCGA-FZ-5920     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-H6-8124 
"IRS1 WILD-TYPE" "IRS1 WILD-TYPE" "IRS1 WILD-TYPE" "IRS1 WILD-TYPE" 
    TCGA-H6-A45N     TCGA-H8-A6C1     TCGA-HZ-7289     TCGA-HZ-7918 
"IRS1 WILD-TYPE" "IRS1 WILD-TYPE" "IRS1 WILD-TYPE" "IRS1 WILD-TYPE" 
    TCGA-HZ-7919     TCGA-HZ-7922     TCGA-HZ-7923     TCGA-HZ-7924 
"IRS1 WILD-TYPE" "IRS1 WILD-TYPE" "IRS1 WILD-TYPE" "IRS1 WILD-TYPE" 
    TCGA-HZ-7925     TCGA-HZ-7926     TCGA-HZ-8001     TCGA-HZ-8002 
"IRS1 WILD-TYPE" "IRS1 WILD-TYPE" "IRS1 WILD-TYPE" "IRS1 WILD-TYPE" 
    TCGA-HZ-8003     TCGA-HZ-8005     TCGA-HZ-8315     TCGA-HZ-8317 
"IRS1 WILD-TYPE" "IRS1 WILD-TYPE" "IRS1 WILD-TYPE" "IRS1 WILD-TYPE" 
    TCGA-HZ-8636     TCGA-HZ-8638     TCGA-HZ-A49G     TCGA-HZ-A49H 
  "IRS1 MUTATED" "IRS1 WILD-TYPE" "IRS1 WILD-TYPE"   "IRS1 MUTATED" 
    TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-IB-7644     TCGA-IB-7645 
"IRS1 WILD-TYPE" "IRS1 WILD-TYPE" "IRS1 WILD-TYPE"   "IRS1 MUTATED" 
    TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7651 
  "IRS1 MUTATED" "IRS1 WILD-TYPE" "IRS1 WILD-TYPE" "IRS1 WILD-TYPE" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887 
"IRS1 WILD-TYPE" "IRS1 WILD-TYPE" "IRS1 WILD-TYPE" "IRS1 WILD-TYPE" 
    TCGA-IB-7888     TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891 
"IRS1 WILD-TYPE" "IRS1 WILD-TYPE" "IRS1 WILD-TYPE" "IRS1 WILD-TYPE" 
    TCGA-IB-7893     TCGA-IB-7897     TCGA-IB-8126     TCGA-IB-8127 
"IRS1 WILD-TYPE" "IRS1 WILD-TYPE" "IRS1 WILD-TYPE" "IRS1 WILD-TYPE" 
    TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS 
"IRS1 WILD-TYPE"   "IRS1 MUTATED" "IRS1 WILD-TYPE" "IRS1 WILD-TYPE" 
    TCGA-IB-A5ST     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
"IRS1 WILD-TYPE" "IRS1 WILD-TYPE" "IRS1 WILD-TYPE" "IRS1 WILD-TYPE" 
    TCGA-PZ-A5RE     TCGA-Q3-A5QY     TCGA-US-A779     TCGA-US-A77E 
"IRS1 WILD-TYPE" "IRS1 WILD-TYPE" "IRS1 WILD-TYPE"   "IRS1 MUTATED" 
    TCGA-US-A77J 
"IRS1 WILD-TYPE" 
    TCGA-F2-6879     TCGA-F2-6880     TCGA-F2-7273     TCGA-F2-7276 
  "IRS1 MUTATED" "IRS1 WILD-TYPE"   "IRS1 MUTATED" "IRS1 WILD-TYPE" 
    TCGA-F2-A44G     TCGA-F2-A44H     TCGA-FB-A4P5     TCGA-FB-A4P6 
"IRS1 WILD-TYPE" "IRS1 WILD-TYPE"   "IRS1 MUTATED"   "IRS1 MUTATED" 
    TCGA-FB-A545     TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-FB-A7DR 
  "IRS1 MUTATED" "IRS1 WILD-TYPE" "IRS1 WILD-TYPE" "IRS1 WILD-TYPE" 
    TCGA-FZ-5920     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-H6-8124 
"IRS1 WILD-TYPE" "IRS1 WILD-TYPE" "IRS1 WILD-TYPE" "IRS1 WILD-TYPE" 
    TCGA-H6-A45N     TCGA-H8-A6C1     TCGA-HZ-7289     TCGA-HZ-7918 
"IRS1 WILD-TYPE" "IRS1 WILD-TYPE" "IRS1 WILD-TYPE" "IRS1 WILD-TYPE" 
    TCGA-HZ-7919     TCGA-HZ-7922     TCGA-HZ-7923     TCGA-HZ-7924 
"IRS1 WILD-TYPE" "IRS1 WILD-TYPE" "IRS1 WILD-TYPE" "IRS1 WILD-TYPE" 
    TCGA-HZ-7925     TCGA-HZ-7926     TCGA-HZ-8001     TCGA-HZ-8002 
"IRS1 WILD-TYPE" "IRS1 WILD-TYPE" "IRS1 WILD-TYPE" "IRS1 WILD-TYPE" 
    TCGA-HZ-8003     TCGA-HZ-8005     TCGA-HZ-8315     TCGA-HZ-8317 
"IRS1 WILD-TYPE" "IRS1 WILD-TYPE" "IRS1 WILD-TYPE" "IRS1 WILD-TYPE" 
    TCGA-HZ-8636     TCGA-HZ-8638     TCGA-HZ-A49G     TCGA-HZ-A49H 
  "IRS1 MUTATED" "IRS1 WILD-TYPE" "IRS1 WILD-TYPE"   "IRS1 MUTATED" 
    TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-IB-7644     TCGA-IB-7645 
"IRS1 WILD-TYPE" "IRS1 WILD-TYPE" "IRS1 WILD-TYPE"   "IRS1 MUTATED" 
    TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7651 
  "IRS1 MUTATED" "IRS1 WILD-TYPE" "IRS1 WILD-TYPE" "IRS1 WILD-TYPE" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887 
"IRS1 WILD-TYPE" "IRS1 WILD-TYPE" "IRS1 WILD-TYPE" "IRS1 WILD-TYPE" 
    TCGA-IB-7888     TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891 
"IRS1 WILD-TYPE" "IRS1 WILD-TYPE" "IRS1 WILD-TYPE" "IRS1 WILD-TYPE" 
    TCGA-IB-7893     TCGA-IB-7897     TCGA-IB-8126     TCGA-IB-8127 
"IRS1 WILD-TYPE" "IRS1 WILD-TYPE" "IRS1 WILD-TYPE" "IRS1 WILD-TYPE" 
    TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS 
"IRS1 WILD-TYPE"   "IRS1 MUTATED" "IRS1 WILD-TYPE" "IRS1 WILD-TYPE" 
    TCGA-IB-A5ST     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
"IRS1 WILD-TYPE" "IRS1 WILD-TYPE" "IRS1 WILD-TYPE" "IRS1 WILD-TYPE" 
    TCGA-PZ-A5RE     TCGA-Q3-A5QY     TCGA-US-A779     TCGA-US-A77E 
"IRS1 WILD-TYPE" "IRS1 WILD-TYPE" "IRS1 WILD-TYPE"   "IRS1 MUTATED" 
    TCGA-US-A77J 
"IRS1 WILD-TYPE" 
[1] "hr=" "1.1"
D12V2, continuous
                vv
clus             STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  IRS1 MUTATED          0        0         1        10         0        1
  IRS1 WILD-TYPE        1        4        10        41         2        2
D12V3, multiclass
                vv
clus             T1+T2 T3+T4
  IRS1 MUTATED       0    12
  IRS1 WILD-TYPE     6    54
D12V4, multiclass
       clus
vv      IRS1 MUTATED IRS1 WILD-TYPE
  T1+T2            0              6
  T3+T4           12             54
D12V5, binary
                cls
clus              0  1
  IRS1 MUTATED    2 10
  IRS1 WILD-TYPE 15 44
[1] "tbl2"
                cls
clus             [,1] [,2]
  IRS1 MUTATED      2   10
  IRS1 WILD-TYPE   15   44
   clus
vv  IRS1 MUTATED IRS1 WILD-TYPE
  0            2             15
  1           10             44
                vv
clus             M0 M1 MX
  IRS1 MUTATED    6  1  5
  IRS1 WILD-TYPE 33  2 25
D12V6, multiclass
    clus
vv   IRS1 MUTATED IRS1 WILD-TYPE
  M0            6             33
  M1            1              2
  MX            5             25
D12V7, binary
                cls
clus              0  1
  IRS1 MUTATED    6  6
  IRS1 WILD-TYPE 30 30
[1] "tbl2"
                cls
clus             [,1] [,2]
  IRS1 MUTATED      6    6
  IRS1 WILD-TYPE   30   30
        clus
vv       IRS1 MUTATED IRS1 WILD-TYPE
  FEMALE            6             30
  MALE              6             30
                vv
clus             PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  IRS1 MUTATED                                    11
  IRS1 WILD-TYPE                                  54
                vv
clus             PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  IRS1 MUTATED                                       0
  IRS1 WILD-TYPE                                     4
                vv
clus             PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  IRS1 MUTATED                                                  0
  IRS1 WILD-TYPE                                                2
D12V8, multiclass
                                                  clus
vv                                                 IRS1 MUTATED IRS1 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                        11             54
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                       0              4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA            0              2
D12V9, continuous
[1] "Remove cluster labels:" "IRS1 MUTATED"          
clus
  IRS1 MUTATED IRS1 WILD-TYPE 
             2             20 
    TCGA-F2-6880     TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-FB-A7DR 
"IRS1 WILD-TYPE" "IRS1 WILD-TYPE" "IRS1 WILD-TYPE" "IRS1 WILD-TYPE" 
    TCGA-H6-8124     TCGA-H6-A45N     TCGA-H8-A6C1     TCGA-IB-7644 
"IRS1 WILD-TYPE" "IRS1 WILD-TYPE" "IRS1 WILD-TYPE" "IRS1 WILD-TYPE" 
    TCGA-IB-7649     TCGA-IB-7651     TCGA-IB-7885     TCGA-IB-7886 
"IRS1 WILD-TYPE" "IRS1 WILD-TYPE" "IRS1 WILD-TYPE" "IRS1 WILD-TYPE" 
    TCGA-IB-7887     TCGA-IB-7891     TCGA-IB-8126     TCGA-IB-8127 
"IRS1 WILD-TYPE" "IRS1 WILD-TYPE" "IRS1 WILD-TYPE" "IRS1 WILD-TYPE" 
    TCGA-IB-A5SS     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
"IRS1 WILD-TYPE" "IRS1 WILD-TYPE" "IRS1 WILD-TYPE" "IRS1 WILD-TYPE" 
D12V10, continuous
[1] "Remove cluster labels:" "IRS1 MUTATED"          
clus
  IRS1 MUTATED IRS1 WILD-TYPE 
             2             17 
    TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-FB-A7DR     TCGA-H6-8124 
"IRS1 WILD-TYPE" "IRS1 WILD-TYPE" "IRS1 WILD-TYPE" "IRS1 WILD-TYPE" 
    TCGA-H8-A6C1     TCGA-IB-7644     TCGA-IB-7649     TCGA-IB-7651 
"IRS1 WILD-TYPE" "IRS1 WILD-TYPE" "IRS1 WILD-TYPE" "IRS1 WILD-TYPE" 
    TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7891     TCGA-IB-8126 
"IRS1 WILD-TYPE" "IRS1 WILD-TYPE" "IRS1 WILD-TYPE" "IRS1 WILD-TYPE" 
    TCGA-IB-8127     TCGA-IB-A5SS     TCGA-IB-A6UG     TCGA-LB-A7SX 
"IRS1 WILD-TYPE" "IRS1 WILD-TYPE" "IRS1 WILD-TYPE" "IRS1 WILD-TYPE" 
    TCGA-OE-A75W 
"IRS1 WILD-TYPE" 
                vv
clus             R0 R1 RX
  IRS1 MUTATED    5  5  0
  IRS1 WILD-TYPE 37 19  2
D12V11, multiclass
    clus
vv   IRS1 MUTATED IRS1 WILD-TYPE
  R0            5             37
  R1            5             19
  RX            0              2
D12V12, continuous

Clustering(13) Variable = PLAUR MUTATION ANALYSIS
D13V1, survival
                 sevent
clus2              0  1
  PLAUR MUTATED    4  0
  PLAUR WILD-TYPE 36 29
  PLAUR MUTATED PLAUR WILD-TYPE 
              4              65 
  PLAUR MUTATED PLAUR WILD-TYPE 
              0              29 
$`PLAUR MUTATED`
TCGA-FB-A545 TCGA-HZ-7926 TCGA-HZ-8315 TCGA-HZ-A49H 
       12.66         0.26         0.92         0.95 

$`PLAUR WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P5 TCGA-FB-A4P6 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR TCGA-FZ-5920 
        0.13        11.93         2.47         0.03         5.46         2.01 
TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7289 
       36.20        20.81        12.89         7.66        13.02         7.89 
TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 
        0.92         0.66         0.13         0.26        12.13        11.87 
TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8317 TCGA-HZ-8636 
        0.62         0.79         0.69         3.95         0.53         0.16 
TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7645 
        2.99         0.76         6.38         1.51        11.41        49.38 
TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7651 TCGA-IB-7652 TCGA-IB-7885 
        4.77        21.90        15.35        19.82        15.65        27.98 
TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 
        4.04         3.62        43.79        15.81        19.66        16.04 
TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP 
        3.85        15.98         0.56        17.16        10.82         9.86 
TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W 
        7.20        15.12         0.26         1.35         4.18         3.62 
TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
        8.12        13.68        16.80        14.14        18.67 

  PLAUR MUTATED PLAUR WILD-TYPE 
           0.26            0.03 
  PLAUR MUTATED PLAUR WILD-TYPE 
          12.66           49.38 
  PLAUR MUTATED PLAUR WILD-TYPE 
          0.935           7.890 
[1] "0.3 - 12.7 (0.9)" "0.0 - 49.4 (7.9)"
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"PLAUR WILD-TYPE" "PLAUR WILD-TYPE" "PLAUR WILD-TYPE" "PLAUR WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"PLAUR WILD-TYPE" "PLAUR WILD-TYPE" "PLAUR WILD-TYPE" "PLAUR WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
  "PLAUR MUTATED" "PLAUR WILD-TYPE" "PLAUR WILD-TYPE" "PLAUR WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"PLAUR WILD-TYPE" "PLAUR WILD-TYPE" "PLAUR WILD-TYPE" "PLAUR WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"PLAUR WILD-TYPE" "PLAUR WILD-TYPE" "PLAUR WILD-TYPE" "PLAUR WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"PLAUR WILD-TYPE" "PLAUR WILD-TYPE" "PLAUR WILD-TYPE" "PLAUR WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"PLAUR WILD-TYPE"   "PLAUR MUTATED" "PLAUR WILD-TYPE" "PLAUR WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"PLAUR WILD-TYPE" "PLAUR WILD-TYPE"   "PLAUR MUTATED" "PLAUR WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"PLAUR WILD-TYPE" "PLAUR WILD-TYPE" "PLAUR WILD-TYPE"   "PLAUR MUTATED" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"PLAUR WILD-TYPE" "PLAUR WILD-TYPE" "PLAUR WILD-TYPE" "PLAUR WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"PLAUR WILD-TYPE" "PLAUR WILD-TYPE" "PLAUR WILD-TYPE" "PLAUR WILD-TYPE" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"PLAUR WILD-TYPE" "PLAUR WILD-TYPE" "PLAUR WILD-TYPE" "PLAUR WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"PLAUR WILD-TYPE" "PLAUR WILD-TYPE" "PLAUR WILD-TYPE" "PLAUR WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"PLAUR WILD-TYPE" "PLAUR WILD-TYPE" "PLAUR WILD-TYPE" "PLAUR WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"PLAUR WILD-TYPE" "PLAUR WILD-TYPE" "PLAUR WILD-TYPE" "PLAUR WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"PLAUR WILD-TYPE" "PLAUR WILD-TYPE" "PLAUR WILD-TYPE" "PLAUR WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"PLAUR WILD-TYPE" "PLAUR WILD-TYPE" "PLAUR WILD-TYPE" "PLAUR WILD-TYPE" 
     TCGA-US-A77J 
"PLAUR WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"PLAUR WILD-TYPE" "PLAUR WILD-TYPE" "PLAUR WILD-TYPE" "PLAUR WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"PLAUR WILD-TYPE" "PLAUR WILD-TYPE" "PLAUR WILD-TYPE" "PLAUR WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
  "PLAUR MUTATED" "PLAUR WILD-TYPE" "PLAUR WILD-TYPE" "PLAUR WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"PLAUR WILD-TYPE" "PLAUR WILD-TYPE" "PLAUR WILD-TYPE" "PLAUR WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"PLAUR WILD-TYPE" "PLAUR WILD-TYPE" "PLAUR WILD-TYPE" "PLAUR WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"PLAUR WILD-TYPE" "PLAUR WILD-TYPE" "PLAUR WILD-TYPE" "PLAUR WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"PLAUR WILD-TYPE"   "PLAUR MUTATED" "PLAUR WILD-TYPE" "PLAUR WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"PLAUR WILD-TYPE" "PLAUR WILD-TYPE"   "PLAUR MUTATED" "PLAUR WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"PLAUR WILD-TYPE" "PLAUR WILD-TYPE" "PLAUR WILD-TYPE"   "PLAUR MUTATED" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"PLAUR WILD-TYPE" "PLAUR WILD-TYPE" "PLAUR WILD-TYPE" "PLAUR WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"PLAUR WILD-TYPE" "PLAUR WILD-TYPE" "PLAUR WILD-TYPE" "PLAUR WILD-TYPE" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"PLAUR WILD-TYPE" "PLAUR WILD-TYPE" "PLAUR WILD-TYPE" "PLAUR WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"PLAUR WILD-TYPE" "PLAUR WILD-TYPE" "PLAUR WILD-TYPE" "PLAUR WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"PLAUR WILD-TYPE" "PLAUR WILD-TYPE" "PLAUR WILD-TYPE" "PLAUR WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"PLAUR WILD-TYPE" "PLAUR WILD-TYPE" "PLAUR WILD-TYPE" "PLAUR WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"PLAUR WILD-TYPE" "PLAUR WILD-TYPE" "PLAUR WILD-TYPE" "PLAUR WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"PLAUR WILD-TYPE" "PLAUR WILD-TYPE" "PLAUR WILD-TYPE" "PLAUR WILD-TYPE" 
     TCGA-US-A77J 
"PLAUR WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"PLAUR WILD-TYPE" "PLAUR WILD-TYPE" "PLAUR WILD-TYPE" "PLAUR WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"PLAUR WILD-TYPE" "PLAUR WILD-TYPE" "PLAUR WILD-TYPE" "PLAUR WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
  "PLAUR MUTATED" "PLAUR WILD-TYPE" "PLAUR WILD-TYPE" "PLAUR WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"PLAUR WILD-TYPE" "PLAUR WILD-TYPE" "PLAUR WILD-TYPE" "PLAUR WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"PLAUR WILD-TYPE" "PLAUR WILD-TYPE" "PLAUR WILD-TYPE" "PLAUR WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"PLAUR WILD-TYPE" "PLAUR WILD-TYPE" "PLAUR WILD-TYPE" "PLAUR WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"PLAUR WILD-TYPE"   "PLAUR MUTATED" "PLAUR WILD-TYPE" "PLAUR WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"PLAUR WILD-TYPE" "PLAUR WILD-TYPE"   "PLAUR MUTATED" "PLAUR WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"PLAUR WILD-TYPE" "PLAUR WILD-TYPE" "PLAUR WILD-TYPE"   "PLAUR MUTATED" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"PLAUR WILD-TYPE" "PLAUR WILD-TYPE" "PLAUR WILD-TYPE" "PLAUR WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"PLAUR WILD-TYPE" "PLAUR WILD-TYPE" "PLAUR WILD-TYPE" "PLAUR WILD-TYPE" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"PLAUR WILD-TYPE" "PLAUR WILD-TYPE" "PLAUR WILD-TYPE" "PLAUR WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"PLAUR WILD-TYPE" "PLAUR WILD-TYPE" "PLAUR WILD-TYPE" "PLAUR WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"PLAUR WILD-TYPE" "PLAUR WILD-TYPE" "PLAUR WILD-TYPE" "PLAUR WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"PLAUR WILD-TYPE" "PLAUR WILD-TYPE" "PLAUR WILD-TYPE" "PLAUR WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"PLAUR WILD-TYPE" "PLAUR WILD-TYPE" "PLAUR WILD-TYPE" "PLAUR WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"PLAUR WILD-TYPE" "PLAUR WILD-TYPE" "PLAUR WILD-TYPE" "PLAUR WILD-TYPE" 
     TCGA-US-A77J 
"PLAUR WILD-TYPE" 
[1] "hr="     "9400000"
D13V2, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  PLAUR MUTATED          0        0         1         4         0        0
  PLAUR WILD-TYPE        1        4        10        47         2        3
D13V3, multiclass
                 vv
clus              T1+T2 T3+T4
  PLAUR MUTATED       0     5
  PLAUR WILD-TYPE     6    61
D13V4, multiclass
       clus
vv      PLAUR MUTATED PLAUR WILD-TYPE
  T1+T2             0               6
  T3+T4             5              61
D13V5, binary
                 cls
clus               0  1
  PLAUR MUTATED    1  4
  PLAUR WILD-TYPE 16 50
[1] "tbl2"
                 cls
clus              [,1] [,2]
  PLAUR MUTATED      1    4
  PLAUR WILD-TYPE   16   50
   clus
vv  PLAUR MUTATED PLAUR WILD-TYPE
  0             1              16
  1             4              50
                 vv
clus              M0 M1 MX
  PLAUR MUTATED    1  0  4
  PLAUR WILD-TYPE 38  3 26
D13V6, multiclass
    clus
vv   PLAUR MUTATED PLAUR WILD-TYPE
  M0             1              38
  M1             0               3
  MX             4              26
D13V7, binary
                 cls
clus               0  1
  PLAUR MUTATED    4  1
  PLAUR WILD-TYPE 32 35
[1] "tbl2"
                 cls
clus              [,1] [,2]
  PLAUR MUTATED      4    1
  PLAUR WILD-TYPE   32   35
        clus
vv       PLAUR MUTATED PLAUR WILD-TYPE
  FEMALE             4              32
  MALE               1              35
                 vv
clus              PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  PLAUR MUTATED                                     5
  PLAUR WILD-TYPE                                  60
                 vv
clus              PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  PLAUR MUTATED                                       0
  PLAUR WILD-TYPE                                     4
                 vv
clus              PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  PLAUR MUTATED                                                  0
  PLAUR WILD-TYPE                                                2
D13V8, multiclass
                                                  clus
vv                                                 PLAUR MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                          5
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                        0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA             0
                                                  clus
vv                                                 PLAUR WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                           60
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                          4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA               2
D13V9, continuous
D13V10, continuous
                 vv
clus              R0 R1 RX
  PLAUR MUTATED    2  1  1
  PLAUR WILD-TYPE 40 23  1
D13V11, multiclass
    clus
vv   PLAUR MUTATED PLAUR WILD-TYPE
  R0             2              40
  R1             1              23
  RX             1               1
D13V12, continuous

Clustering(14) Variable = TERF1 MUTATION ANALYSIS
D14V1, survival
                 sevent
clus2              0  1
  TERF1 MUTATED    4  1
  TERF1 WILD-TYPE 36 28
  TERF1 MUTATED TERF1 WILD-TYPE 
              5              64 
  TERF1 MUTATED TERF1 WILD-TYPE 
              1              28 
$`TERF1 MUTATED`
TCGA-FB-A4P6 TCGA-FB-A78T TCGA-H6-8124 TCGA-HZ-7919 TCGA-IB-7893 
       11.93         0.03        12.89         0.66         3.85 

$`TERF1 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P5 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A7DR TCGA-FZ-5920 TCGA-FZ-5922 
        0.13        12.66         2.47         5.46         2.01        36.20 
TCGA-FZ-5923 TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-7922 
       20.81         7.66        13.02         7.89         0.92         0.13 
TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 
        0.26        12.13        11.87         0.26         0.62         0.79 
TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8636 TCGA-HZ-8638 
        0.69         3.95         0.92         0.53         0.16         2.99 
TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7645 
        0.76         0.95         6.38         1.51        11.41        49.38 
TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7651 TCGA-IB-7652 TCGA-IB-7885 
        4.77        21.90        15.35        19.82        15.65        27.98 
TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 
        4.04         3.62        43.79        15.81        19.66        16.04 
TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ 
       15.98         0.56        17.16        10.82         9.86         7.20 
TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W TCGA-PZ-A5RE 
       15.12         0.26         1.35         4.18         3.62         8.12 
TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
       13.68        16.80        14.14        18.67 

  TERF1 MUTATED TERF1 WILD-TYPE 
           0.03            0.13 
  TERF1 MUTATED TERF1 WILD-TYPE 
          12.89           49.38 
  TERF1 MUTATED TERF1 WILD-TYPE 
          3.850           7.775 
[1] "0.0 - 12.9 (3.9)" "0.1 - 49.4 (7.8)"
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"TERF1 WILD-TYPE" "TERF1 WILD-TYPE" "TERF1 WILD-TYPE" "TERF1 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"TERF1 WILD-TYPE" "TERF1 WILD-TYPE" "TERF1 WILD-TYPE"   "TERF1 MUTATED" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"TERF1 WILD-TYPE" "TERF1 WILD-TYPE"   "TERF1 MUTATED" "TERF1 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"TERF1 WILD-TYPE" "TERF1 WILD-TYPE" "TERF1 WILD-TYPE"   "TERF1 MUTATED" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"TERF1 WILD-TYPE" "TERF1 WILD-TYPE" "TERF1 WILD-TYPE" "TERF1 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
  "TERF1 MUTATED" "TERF1 WILD-TYPE" "TERF1 WILD-TYPE" "TERF1 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"TERF1 WILD-TYPE" "TERF1 WILD-TYPE" "TERF1 WILD-TYPE" "TERF1 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"TERF1 WILD-TYPE" "TERF1 WILD-TYPE" "TERF1 WILD-TYPE" "TERF1 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"TERF1 WILD-TYPE" "TERF1 WILD-TYPE" "TERF1 WILD-TYPE" "TERF1 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"TERF1 WILD-TYPE" "TERF1 WILD-TYPE" "TERF1 WILD-TYPE" "TERF1 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"TERF1 WILD-TYPE" "TERF1 WILD-TYPE" "TERF1 WILD-TYPE" "TERF1 WILD-TYPE" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"TERF1 WILD-TYPE" "TERF1 WILD-TYPE" "TERF1 WILD-TYPE" "TERF1 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"TERF1 WILD-TYPE" "TERF1 WILD-TYPE" "TERF1 WILD-TYPE" "TERF1 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
  "TERF1 MUTATED" "TERF1 WILD-TYPE" "TERF1 WILD-TYPE" "TERF1 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"TERF1 WILD-TYPE" "TERF1 WILD-TYPE" "TERF1 WILD-TYPE" "TERF1 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"TERF1 WILD-TYPE" "TERF1 WILD-TYPE" "TERF1 WILD-TYPE" "TERF1 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"TERF1 WILD-TYPE" "TERF1 WILD-TYPE" "TERF1 WILD-TYPE" "TERF1 WILD-TYPE" 
     TCGA-US-A77J 
"TERF1 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"TERF1 WILD-TYPE" "TERF1 WILD-TYPE" "TERF1 WILD-TYPE" "TERF1 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"TERF1 WILD-TYPE" "TERF1 WILD-TYPE" "TERF1 WILD-TYPE"   "TERF1 MUTATED" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"TERF1 WILD-TYPE" "TERF1 WILD-TYPE"   "TERF1 MUTATED" "TERF1 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"TERF1 WILD-TYPE" "TERF1 WILD-TYPE" "TERF1 WILD-TYPE"   "TERF1 MUTATED" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"TERF1 WILD-TYPE" "TERF1 WILD-TYPE" "TERF1 WILD-TYPE" "TERF1 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
  "TERF1 MUTATED" "TERF1 WILD-TYPE" "TERF1 WILD-TYPE" "TERF1 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"TERF1 WILD-TYPE" "TERF1 WILD-TYPE" "TERF1 WILD-TYPE" "TERF1 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"TERF1 WILD-TYPE" "TERF1 WILD-TYPE" "TERF1 WILD-TYPE" "TERF1 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"TERF1 WILD-TYPE" "TERF1 WILD-TYPE" "TERF1 WILD-TYPE" "TERF1 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"TERF1 WILD-TYPE" "TERF1 WILD-TYPE" "TERF1 WILD-TYPE" "TERF1 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"TERF1 WILD-TYPE" "TERF1 WILD-TYPE" "TERF1 WILD-TYPE" "TERF1 WILD-TYPE" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"TERF1 WILD-TYPE" "TERF1 WILD-TYPE" "TERF1 WILD-TYPE" "TERF1 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"TERF1 WILD-TYPE" "TERF1 WILD-TYPE" "TERF1 WILD-TYPE" "TERF1 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
  "TERF1 MUTATED" "TERF1 WILD-TYPE" "TERF1 WILD-TYPE" "TERF1 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"TERF1 WILD-TYPE" "TERF1 WILD-TYPE" "TERF1 WILD-TYPE" "TERF1 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"TERF1 WILD-TYPE" "TERF1 WILD-TYPE" "TERF1 WILD-TYPE" "TERF1 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"TERF1 WILD-TYPE" "TERF1 WILD-TYPE" "TERF1 WILD-TYPE" "TERF1 WILD-TYPE" 
     TCGA-US-A77J 
"TERF1 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"TERF1 WILD-TYPE" "TERF1 WILD-TYPE" "TERF1 WILD-TYPE" "TERF1 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"TERF1 WILD-TYPE" "TERF1 WILD-TYPE" "TERF1 WILD-TYPE"   "TERF1 MUTATED" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"TERF1 WILD-TYPE" "TERF1 WILD-TYPE"   "TERF1 MUTATED" "TERF1 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"TERF1 WILD-TYPE" "TERF1 WILD-TYPE" "TERF1 WILD-TYPE"   "TERF1 MUTATED" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"TERF1 WILD-TYPE" "TERF1 WILD-TYPE" "TERF1 WILD-TYPE" "TERF1 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
  "TERF1 MUTATED" "TERF1 WILD-TYPE" "TERF1 WILD-TYPE" "TERF1 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"TERF1 WILD-TYPE" "TERF1 WILD-TYPE" "TERF1 WILD-TYPE" "TERF1 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"TERF1 WILD-TYPE" "TERF1 WILD-TYPE" "TERF1 WILD-TYPE" "TERF1 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"TERF1 WILD-TYPE" "TERF1 WILD-TYPE" "TERF1 WILD-TYPE" "TERF1 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"TERF1 WILD-TYPE" "TERF1 WILD-TYPE" "TERF1 WILD-TYPE" "TERF1 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"TERF1 WILD-TYPE" "TERF1 WILD-TYPE" "TERF1 WILD-TYPE" "TERF1 WILD-TYPE" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"TERF1 WILD-TYPE" "TERF1 WILD-TYPE" "TERF1 WILD-TYPE" "TERF1 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"TERF1 WILD-TYPE" "TERF1 WILD-TYPE" "TERF1 WILD-TYPE" "TERF1 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
  "TERF1 MUTATED" "TERF1 WILD-TYPE" "TERF1 WILD-TYPE" "TERF1 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"TERF1 WILD-TYPE" "TERF1 WILD-TYPE" "TERF1 WILD-TYPE" "TERF1 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"TERF1 WILD-TYPE" "TERF1 WILD-TYPE" "TERF1 WILD-TYPE" "TERF1 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"TERF1 WILD-TYPE" "TERF1 WILD-TYPE" "TERF1 WILD-TYPE" "TERF1 WILD-TYPE" 
     TCGA-US-A77J 
"TERF1 WILD-TYPE" 
[1] "hr=" "1.1"
D14V2, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  TERF1 MUTATED          0        0         1         4         0        0
  TERF1 WILD-TYPE        1        4        10        47         2        3
D14V3, multiclass
                 vv
clus              T1+T2 T3+T4
  TERF1 MUTATED       0     5
  TERF1 WILD-TYPE     6    61
D14V4, multiclass
       clus
vv      TERF1 MUTATED TERF1 WILD-TYPE
  T1+T2             0               6
  T3+T4             5              61
D14V5, binary
                 cls
clus               0  1
  TERF1 MUTATED    1  4
  TERF1 WILD-TYPE 16 50
[1] "tbl2"
                 cls
clus              [,1] [,2]
  TERF1 MUTATED      1    4
  TERF1 WILD-TYPE   16   50
   clus
vv  TERF1 MUTATED TERF1 WILD-TYPE
  0             1              16
  1             4              50
                 vv
clus              M0 M1 MX
  TERF1 MUTATED    4  0  1
  TERF1 WILD-TYPE 35  3 29
D14V6, multiclass
    clus
vv   TERF1 MUTATED TERF1 WILD-TYPE
  M0             4              35
  M1             0               3
  MX             1              29
D14V7, binary
                 cls
clus               0  1
  TERF1 MUTATED    3  2
  TERF1 WILD-TYPE 33 34
[1] "tbl2"
                 cls
clus              [,1] [,2]
  TERF1 MUTATED      3    2
  TERF1 WILD-TYPE   33   34
        clus
vv       TERF1 MUTATED TERF1 WILD-TYPE
  FEMALE             3              33
  MALE               2              34
                 vv
clus              PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  TERF1 MUTATED                                     5
  TERF1 WILD-TYPE                                  60
                 vv
clus              PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  TERF1 MUTATED                                       0
  TERF1 WILD-TYPE                                     4
                 vv
clus              PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  TERF1 MUTATED                                                  0
  TERF1 WILD-TYPE                                                2
D14V8, multiclass
                                                  clus
vv                                                 TERF1 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                          5
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                        0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA             0
                                                  clus
vv                                                 TERF1 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                           60
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                          4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA               2
D14V9, continuous
D14V10, continuous
                 vv
clus              R0 R1 RX
  TERF1 MUTATED    3  1  0
  TERF1 WILD-TYPE 39 23  2
D14V11, multiclass
    clus
vv   TERF1 MUTATED TERF1 WILD-TYPE
  R0             3              39
  R1             1              23
  RX             0               2
D14V12, continuous

Clustering(15) Variable = PDILT MUTATION ANALYSIS
D15V1, survival
                 sevent
clus2              0  1
  PDILT MUTATED    5  5
  PDILT WILD-TYPE 35 24
  PDILT MUTATED PDILT WILD-TYPE 
             10              59 
  PDILT MUTATED PDILT WILD-TYPE 
              5              24 
$`PDILT MUTATED`
TCGA-F2-A44H TCGA-H6-A45N TCGA-HZ-7925 TCGA-HZ-A49G TCGA-IB-7645 TCGA-IB-7646 
       19.27         7.66        11.87         0.76        49.38         4.77 
TCGA-IB-7647 TCGA-IB-7651 TCGA-LB-A7SX TCGA-PZ-A5RE 
       21.90        19.82         4.18         8.12 

$`PDILT WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-FB-A4P5 
       10.98         9.70        11.84         7.10         5.03         0.13 
TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR TCGA-FZ-5920 
       11.93        12.66         2.47         0.03         5.46         2.01 
TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 TCGA-H8-A6C1 TCGA-HZ-7289 TCGA-HZ-7918 
       36.20        20.81        12.89        13.02         7.89         0.92 
TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7926 TCGA-HZ-8001 
        0.66         0.13         0.26        12.13         0.26         0.62 
TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8636 
        0.79         0.69         3.95         0.92         0.53         0.16 
TCGA-HZ-8638 TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7649 
        2.99         0.95         6.38         1.51        11.41        15.35 
TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 
       15.65        27.98         4.04         3.62        43.79        15.81 
TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-8127 
       19.66        16.04         3.85        15.98         0.56        17.16 
TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG 
       10.82         9.86         7.20        15.12         0.26         1.35 
TCGA-OE-A75W TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
        3.62        13.68        16.80        14.14        18.67 

  PDILT MUTATED PDILT WILD-TYPE 
           0.76            0.03 
  PDILT MUTATED PDILT WILD-TYPE 
          49.38           43.79 
  PDILT MUTATED PDILT WILD-TYPE 
          9.995           7.100 
[1] "0.8 - 49.4 (10.0)" "0.0 - 43.8 (7.1)" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"PDILT WILD-TYPE" "PDILT WILD-TYPE" "PDILT WILD-TYPE" "PDILT WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"PDILT WILD-TYPE"   "PDILT MUTATED" "PDILT WILD-TYPE" "PDILT WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"PDILT WILD-TYPE" "PDILT WILD-TYPE" "PDILT WILD-TYPE" "PDILT WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"PDILT WILD-TYPE" "PDILT WILD-TYPE" "PDILT WILD-TYPE" "PDILT WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
  "PDILT MUTATED" "PDILT WILD-TYPE" "PDILT WILD-TYPE" "PDILT WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"PDILT WILD-TYPE" "PDILT WILD-TYPE" "PDILT WILD-TYPE" "PDILT WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
  "PDILT MUTATED" "PDILT WILD-TYPE" "PDILT WILD-TYPE" "PDILT WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"PDILT WILD-TYPE" "PDILT WILD-TYPE" "PDILT WILD-TYPE" "PDILT WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"PDILT WILD-TYPE" "PDILT WILD-TYPE"   "PDILT MUTATED" "PDILT WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"PDILT WILD-TYPE" "PDILT WILD-TYPE" "PDILT WILD-TYPE"   "PDILT MUTATED" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
  "PDILT MUTATED"   "PDILT MUTATED" "PDILT WILD-TYPE"   "PDILT MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"PDILT WILD-TYPE" "PDILT WILD-TYPE" "PDILT WILD-TYPE" "PDILT WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"PDILT WILD-TYPE" "PDILT WILD-TYPE" "PDILT WILD-TYPE" "PDILT WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"PDILT WILD-TYPE" "PDILT WILD-TYPE" "PDILT WILD-TYPE" "PDILT WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"PDILT WILD-TYPE" "PDILT WILD-TYPE" "PDILT WILD-TYPE" "PDILT WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"PDILT WILD-TYPE" "PDILT WILD-TYPE"   "PDILT MUTATED" "PDILT WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
  "PDILT MUTATED" "PDILT WILD-TYPE" "PDILT WILD-TYPE" "PDILT WILD-TYPE" 
     TCGA-US-A77J 
"PDILT WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"PDILT WILD-TYPE" "PDILT WILD-TYPE" "PDILT WILD-TYPE" "PDILT WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"PDILT WILD-TYPE"   "PDILT MUTATED" "PDILT WILD-TYPE" "PDILT WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"PDILT WILD-TYPE" "PDILT WILD-TYPE" "PDILT WILD-TYPE" "PDILT WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"PDILT WILD-TYPE" "PDILT WILD-TYPE" "PDILT WILD-TYPE" "PDILT WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
  "PDILT MUTATED" "PDILT WILD-TYPE" "PDILT WILD-TYPE" "PDILT WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"PDILT WILD-TYPE" "PDILT WILD-TYPE" "PDILT WILD-TYPE" "PDILT WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
  "PDILT MUTATED" "PDILT WILD-TYPE" "PDILT WILD-TYPE" "PDILT WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"PDILT WILD-TYPE" "PDILT WILD-TYPE" "PDILT WILD-TYPE" "PDILT WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"PDILT WILD-TYPE" "PDILT WILD-TYPE"   "PDILT MUTATED" "PDILT WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"PDILT WILD-TYPE" "PDILT WILD-TYPE" "PDILT WILD-TYPE"   "PDILT MUTATED" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
  "PDILT MUTATED"   "PDILT MUTATED" "PDILT WILD-TYPE"   "PDILT MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"PDILT WILD-TYPE" "PDILT WILD-TYPE" "PDILT WILD-TYPE" "PDILT WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"PDILT WILD-TYPE" "PDILT WILD-TYPE" "PDILT WILD-TYPE" "PDILT WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"PDILT WILD-TYPE" "PDILT WILD-TYPE" "PDILT WILD-TYPE" "PDILT WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"PDILT WILD-TYPE" "PDILT WILD-TYPE" "PDILT WILD-TYPE" "PDILT WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"PDILT WILD-TYPE" "PDILT WILD-TYPE"   "PDILT MUTATED" "PDILT WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
  "PDILT MUTATED" "PDILT WILD-TYPE" "PDILT WILD-TYPE" "PDILT WILD-TYPE" 
     TCGA-US-A77J 
"PDILT WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"PDILT WILD-TYPE" "PDILT WILD-TYPE" "PDILT WILD-TYPE" "PDILT WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"PDILT WILD-TYPE"   "PDILT MUTATED" "PDILT WILD-TYPE" "PDILT WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"PDILT WILD-TYPE" "PDILT WILD-TYPE" "PDILT WILD-TYPE" "PDILT WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"PDILT WILD-TYPE" "PDILT WILD-TYPE" "PDILT WILD-TYPE" "PDILT WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
  "PDILT MUTATED" "PDILT WILD-TYPE" "PDILT WILD-TYPE" "PDILT WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"PDILT WILD-TYPE" "PDILT WILD-TYPE" "PDILT WILD-TYPE" "PDILT WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
  "PDILT MUTATED" "PDILT WILD-TYPE" "PDILT WILD-TYPE" "PDILT WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"PDILT WILD-TYPE" "PDILT WILD-TYPE" "PDILT WILD-TYPE" "PDILT WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"PDILT WILD-TYPE" "PDILT WILD-TYPE"   "PDILT MUTATED" "PDILT WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"PDILT WILD-TYPE" "PDILT WILD-TYPE" "PDILT WILD-TYPE"   "PDILT MUTATED" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
  "PDILT MUTATED"   "PDILT MUTATED" "PDILT WILD-TYPE"   "PDILT MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"PDILT WILD-TYPE" "PDILT WILD-TYPE" "PDILT WILD-TYPE" "PDILT WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"PDILT WILD-TYPE" "PDILT WILD-TYPE" "PDILT WILD-TYPE" "PDILT WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"PDILT WILD-TYPE" "PDILT WILD-TYPE" "PDILT WILD-TYPE" "PDILT WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"PDILT WILD-TYPE" "PDILT WILD-TYPE" "PDILT WILD-TYPE" "PDILT WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"PDILT WILD-TYPE" "PDILT WILD-TYPE"   "PDILT MUTATED" "PDILT WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
  "PDILT MUTATED" "PDILT WILD-TYPE" "PDILT WILD-TYPE" "PDILT WILD-TYPE" 
     TCGA-US-A77J 
"PDILT WILD-TYPE" 
[1] "hr=" "2.1"
D15V2, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  PDILT MUTATED          0        0         1         9         0        0
  PDILT WILD-TYPE        1        4        10        42         2        3
D15V3, multiclass
                 vv
clus              T1+T2 T3+T4
  PDILT MUTATED       1     9
  PDILT WILD-TYPE     5    57
D15V4, multiclass
       clus
vv      PDILT MUTATED PDILT WILD-TYPE
  T1+T2             1               5
  T3+T4             9              57
D15V5, binary
                 cls
clus               0  1
  PDILT MUTATED    1  9
  PDILT WILD-TYPE 16 45
[1] "tbl2"
                 cls
clus              [,1] [,2]
  PDILT MUTATED      1    9
  PDILT WILD-TYPE   16   45
   clus
vv  PDILT MUTATED PDILT WILD-TYPE
  0             1              16
  1             9              45
                 vv
clus              M0 M1 MX
  PDILT MUTATED    5  0  5
  PDILT WILD-TYPE 34  3 25
D15V6, multiclass
    clus
vv   PDILT MUTATED PDILT WILD-TYPE
  M0             5              34
  M1             0               3
  MX             5              25
D15V7, binary
                 cls
clus               0  1
  PDILT MUTATED    7  3
  PDILT WILD-TYPE 29 33
[1] "tbl2"
                 cls
clus              [,1] [,2]
  PDILT MUTATED      7    3
  PDILT WILD-TYPE   29   33
        clus
vv       PDILT MUTATED PDILT WILD-TYPE
  FEMALE             7              29
  MALE               3              33
                 vv
clus              PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  PDILT MUTATED                                     9
  PDILT WILD-TYPE                                  56
                 vv
clus              PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  PDILT MUTATED                                       1
  PDILT WILD-TYPE                                     3
                 vv
clus              PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  PDILT MUTATED                                                  0
  PDILT WILD-TYPE                                                2
D15V8, multiclass
                                                  clus
vv                                                 PDILT MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                          9
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                        1
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA             0
                                                  clus
vv                                                 PDILT WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                           56
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                          3
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA               2
D15V9, continuous
D15V10, continuous
[1] "Remove cluster labels:" "PDILT MUTATED"         
clus
  PDILT MUTATED PDILT WILD-TYPE 
              2              17 
     TCGA-FB-A4P5      TCGA-FB-A4P6      TCGA-FB-A5VM      TCGA-FB-A78T 
"PDILT WILD-TYPE" "PDILT WILD-TYPE" "PDILT WILD-TYPE" "PDILT WILD-TYPE" 
     TCGA-FB-A7DR      TCGA-H6-8124      TCGA-H8-A6C1      TCGA-IB-7644 
"PDILT WILD-TYPE" "PDILT WILD-TYPE" "PDILT WILD-TYPE" "PDILT WILD-TYPE" 
     TCGA-IB-7649      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7891 
"PDILT WILD-TYPE" "PDILT WILD-TYPE" "PDILT WILD-TYPE" "PDILT WILD-TYPE" 
     TCGA-IB-8126      TCGA-IB-8127      TCGA-IB-A5SS      TCGA-IB-A6UG 
"PDILT WILD-TYPE" "PDILT WILD-TYPE" "PDILT WILD-TYPE" "PDILT WILD-TYPE" 
     TCGA-OE-A75W 
"PDILT WILD-TYPE" 
                 vv
clus              R0 R1 RX
  PDILT MUTATED    4  4  0
  PDILT WILD-TYPE 38 20  2
D15V11, multiclass
    clus
vv   PDILT MUTATED PDILT WILD-TYPE
  R0             4              38
  R1             4              20
  RX             0               2
D15V12, continuous

Clustering(16) Variable = CUX2 MUTATION ANALYSIS
D16V1, survival
                sevent
clus2             0  1
  CUX2 MUTATED    4  5
  CUX2 WILD-TYPE 36 24
  CUX2 MUTATED CUX2 WILD-TYPE 
             9             60 
  CUX2 MUTATED CUX2 WILD-TYPE 
             5             24 
$`CUX2 MUTATED`
TCGA-F2-6879 TCGA-H8-A6C1 TCGA-HZ-7289 TCGA-HZ-8317 TCGA-HZ-A49G TCGA-IB-7644 
       10.98        13.02         7.89         0.53         0.76        11.41 
TCGA-IB-7651 TCGA-IB-7888 TCGA-IB-7893 
       19.82        43.79         3.85 

$`CUX2 WILD-TYPE`
TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H TCGA-FB-A4P5 
        9.70        11.84         7.10         5.03        19.27         0.13 
TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR TCGA-FZ-5920 
       11.93        12.66         2.47         0.03         5.46         2.01 
TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-HZ-7918 TCGA-HZ-7919 
       36.20        20.81        12.89         7.66         0.92         0.66 
TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8001 
        0.13         0.26        12.13        11.87         0.26         0.62 
TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8636 TCGA-HZ-8638 
        0.79         0.69         3.95         0.92         0.16         2.99 
TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 
        0.95         6.38         1.51        49.38         4.77        21.90 
TCGA-IB-7649 TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7889 
       15.35        15.65        27.98         4.04         3.62        15.81 
TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO 
       19.66        16.04        15.98         0.56        17.16        10.82 
TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX 
        9.86         7.20        15.12         0.26         1.35         4.18 
TCGA-OE-A75W TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
        3.62         8.12        13.68        16.80        14.14        18.67 

  CUX2 MUTATED CUX2 WILD-TYPE 
          0.53           0.03 
  CUX2 MUTATED CUX2 WILD-TYPE 
         43.79          49.38 
  CUX2 MUTATED CUX2 WILD-TYPE 
         10.98           7.15 
[1] "0.5 - 43.8 (11.0)" "0.0 - 49.4 (7.2)" 
    TCGA-F2-6879     TCGA-F2-6880     TCGA-F2-7273     TCGA-F2-7276 
  "CUX2 MUTATED" "CUX2 WILD-TYPE" "CUX2 WILD-TYPE" "CUX2 WILD-TYPE" 
    TCGA-F2-A44G     TCGA-F2-A44H     TCGA-FB-A4P5     TCGA-FB-A4P6 
"CUX2 WILD-TYPE" "CUX2 WILD-TYPE" "CUX2 WILD-TYPE" "CUX2 WILD-TYPE" 
    TCGA-FB-A545     TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-FB-A7DR 
"CUX2 WILD-TYPE" "CUX2 WILD-TYPE" "CUX2 WILD-TYPE" "CUX2 WILD-TYPE" 
    TCGA-FZ-5920     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-H6-8124 
"CUX2 WILD-TYPE" "CUX2 WILD-TYPE" "CUX2 WILD-TYPE" "CUX2 WILD-TYPE" 
    TCGA-H6-A45N     TCGA-H8-A6C1     TCGA-HZ-7289     TCGA-HZ-7918 
"CUX2 WILD-TYPE"   "CUX2 MUTATED"   "CUX2 MUTATED" "CUX2 WILD-TYPE" 
    TCGA-HZ-7919     TCGA-HZ-7922     TCGA-HZ-7923     TCGA-HZ-7924 
"CUX2 WILD-TYPE" "CUX2 WILD-TYPE" "CUX2 WILD-TYPE" "CUX2 WILD-TYPE" 
    TCGA-HZ-7925     TCGA-HZ-7926     TCGA-HZ-8001     TCGA-HZ-8002 
"CUX2 WILD-TYPE" "CUX2 WILD-TYPE" "CUX2 WILD-TYPE" "CUX2 WILD-TYPE" 
    TCGA-HZ-8003     TCGA-HZ-8005     TCGA-HZ-8315     TCGA-HZ-8317 
"CUX2 WILD-TYPE" "CUX2 WILD-TYPE" "CUX2 WILD-TYPE"   "CUX2 MUTATED" 
    TCGA-HZ-8636     TCGA-HZ-8638     TCGA-HZ-A49G     TCGA-HZ-A49H 
"CUX2 WILD-TYPE" "CUX2 WILD-TYPE"   "CUX2 MUTATED" "CUX2 WILD-TYPE" 
    TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-IB-7644     TCGA-IB-7645 
"CUX2 WILD-TYPE" "CUX2 WILD-TYPE"   "CUX2 MUTATED" "CUX2 WILD-TYPE" 
    TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7651 
"CUX2 WILD-TYPE" "CUX2 WILD-TYPE" "CUX2 WILD-TYPE"   "CUX2 MUTATED" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887 
"CUX2 WILD-TYPE" "CUX2 WILD-TYPE" "CUX2 WILD-TYPE" "CUX2 WILD-TYPE" 
    TCGA-IB-7888     TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891 
  "CUX2 MUTATED" "CUX2 WILD-TYPE" "CUX2 WILD-TYPE" "CUX2 WILD-TYPE" 
    TCGA-IB-7893     TCGA-IB-7897     TCGA-IB-8126     TCGA-IB-8127 
  "CUX2 MUTATED" "CUX2 WILD-TYPE" "CUX2 WILD-TYPE" "CUX2 WILD-TYPE" 
    TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS 
"CUX2 WILD-TYPE" "CUX2 WILD-TYPE" "CUX2 WILD-TYPE" "CUX2 WILD-TYPE" 
    TCGA-IB-A5ST     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
"CUX2 WILD-TYPE" "CUX2 WILD-TYPE" "CUX2 WILD-TYPE" "CUX2 WILD-TYPE" 
    TCGA-PZ-A5RE     TCGA-Q3-A5QY     TCGA-US-A779     TCGA-US-A77E 
"CUX2 WILD-TYPE" "CUX2 WILD-TYPE" "CUX2 WILD-TYPE" "CUX2 WILD-TYPE" 
    TCGA-US-A77J 
"CUX2 WILD-TYPE" 
    TCGA-F2-6879     TCGA-F2-6880     TCGA-F2-7273     TCGA-F2-7276 
  "CUX2 MUTATED" "CUX2 WILD-TYPE" "CUX2 WILD-TYPE" "CUX2 WILD-TYPE" 
    TCGA-F2-A44G     TCGA-F2-A44H     TCGA-FB-A4P5     TCGA-FB-A4P6 
"CUX2 WILD-TYPE" "CUX2 WILD-TYPE" "CUX2 WILD-TYPE" "CUX2 WILD-TYPE" 
    TCGA-FB-A545     TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-FB-A7DR 
"CUX2 WILD-TYPE" "CUX2 WILD-TYPE" "CUX2 WILD-TYPE" "CUX2 WILD-TYPE" 
    TCGA-FZ-5920     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-H6-8124 
"CUX2 WILD-TYPE" "CUX2 WILD-TYPE" "CUX2 WILD-TYPE" "CUX2 WILD-TYPE" 
    TCGA-H6-A45N     TCGA-H8-A6C1     TCGA-HZ-7289     TCGA-HZ-7918 
"CUX2 WILD-TYPE"   "CUX2 MUTATED"   "CUX2 MUTATED" "CUX2 WILD-TYPE" 
    TCGA-HZ-7919     TCGA-HZ-7922     TCGA-HZ-7923     TCGA-HZ-7924 
"CUX2 WILD-TYPE" "CUX2 WILD-TYPE" "CUX2 WILD-TYPE" "CUX2 WILD-TYPE" 
    TCGA-HZ-7925     TCGA-HZ-7926     TCGA-HZ-8001     TCGA-HZ-8002 
"CUX2 WILD-TYPE" "CUX2 WILD-TYPE" "CUX2 WILD-TYPE" "CUX2 WILD-TYPE" 
    TCGA-HZ-8003     TCGA-HZ-8005     TCGA-HZ-8315     TCGA-HZ-8317 
"CUX2 WILD-TYPE" "CUX2 WILD-TYPE" "CUX2 WILD-TYPE"   "CUX2 MUTATED" 
    TCGA-HZ-8636     TCGA-HZ-8638     TCGA-HZ-A49G     TCGA-HZ-A49H 
"CUX2 WILD-TYPE" "CUX2 WILD-TYPE"   "CUX2 MUTATED" "CUX2 WILD-TYPE" 
    TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-IB-7644     TCGA-IB-7645 
"CUX2 WILD-TYPE" "CUX2 WILD-TYPE"   "CUX2 MUTATED" "CUX2 WILD-TYPE" 
    TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7651 
"CUX2 WILD-TYPE" "CUX2 WILD-TYPE" "CUX2 WILD-TYPE"   "CUX2 MUTATED" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887 
"CUX2 WILD-TYPE" "CUX2 WILD-TYPE" "CUX2 WILD-TYPE" "CUX2 WILD-TYPE" 
    TCGA-IB-7888     TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891 
  "CUX2 MUTATED" "CUX2 WILD-TYPE" "CUX2 WILD-TYPE" "CUX2 WILD-TYPE" 
    TCGA-IB-7893     TCGA-IB-7897     TCGA-IB-8126     TCGA-IB-8127 
  "CUX2 MUTATED" "CUX2 WILD-TYPE" "CUX2 WILD-TYPE" "CUX2 WILD-TYPE" 
    TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS 
"CUX2 WILD-TYPE" "CUX2 WILD-TYPE" "CUX2 WILD-TYPE" "CUX2 WILD-TYPE" 
    TCGA-IB-A5ST     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
"CUX2 WILD-TYPE" "CUX2 WILD-TYPE" "CUX2 WILD-TYPE" "CUX2 WILD-TYPE" 
    TCGA-PZ-A5RE     TCGA-Q3-A5QY     TCGA-US-A779     TCGA-US-A77E 
"CUX2 WILD-TYPE" "CUX2 WILD-TYPE" "CUX2 WILD-TYPE" "CUX2 WILD-TYPE" 
    TCGA-US-A77J 
"CUX2 WILD-TYPE" 
    TCGA-F2-6879     TCGA-F2-6880     TCGA-F2-7273     TCGA-F2-7276 
  "CUX2 MUTATED" "CUX2 WILD-TYPE" "CUX2 WILD-TYPE" "CUX2 WILD-TYPE" 
    TCGA-F2-A44G     TCGA-F2-A44H     TCGA-FB-A4P5     TCGA-FB-A4P6 
"CUX2 WILD-TYPE" "CUX2 WILD-TYPE" "CUX2 WILD-TYPE" "CUX2 WILD-TYPE" 
    TCGA-FB-A545     TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-FB-A7DR 
"CUX2 WILD-TYPE" "CUX2 WILD-TYPE" "CUX2 WILD-TYPE" "CUX2 WILD-TYPE" 
    TCGA-FZ-5920     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-H6-8124 
"CUX2 WILD-TYPE" "CUX2 WILD-TYPE" "CUX2 WILD-TYPE" "CUX2 WILD-TYPE" 
    TCGA-H6-A45N     TCGA-H8-A6C1     TCGA-HZ-7289     TCGA-HZ-7918 
"CUX2 WILD-TYPE"   "CUX2 MUTATED"   "CUX2 MUTATED" "CUX2 WILD-TYPE" 
    TCGA-HZ-7919     TCGA-HZ-7922     TCGA-HZ-7923     TCGA-HZ-7924 
"CUX2 WILD-TYPE" "CUX2 WILD-TYPE" "CUX2 WILD-TYPE" "CUX2 WILD-TYPE" 
    TCGA-HZ-7925     TCGA-HZ-7926     TCGA-HZ-8001     TCGA-HZ-8002 
"CUX2 WILD-TYPE" "CUX2 WILD-TYPE" "CUX2 WILD-TYPE" "CUX2 WILD-TYPE" 
    TCGA-HZ-8003     TCGA-HZ-8005     TCGA-HZ-8315     TCGA-HZ-8317 
"CUX2 WILD-TYPE" "CUX2 WILD-TYPE" "CUX2 WILD-TYPE"   "CUX2 MUTATED" 
    TCGA-HZ-8636     TCGA-HZ-8638     TCGA-HZ-A49G     TCGA-HZ-A49H 
"CUX2 WILD-TYPE" "CUX2 WILD-TYPE"   "CUX2 MUTATED" "CUX2 WILD-TYPE" 
    TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-IB-7644     TCGA-IB-7645 
"CUX2 WILD-TYPE" "CUX2 WILD-TYPE"   "CUX2 MUTATED" "CUX2 WILD-TYPE" 
    TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7651 
"CUX2 WILD-TYPE" "CUX2 WILD-TYPE" "CUX2 WILD-TYPE"   "CUX2 MUTATED" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887 
"CUX2 WILD-TYPE" "CUX2 WILD-TYPE" "CUX2 WILD-TYPE" "CUX2 WILD-TYPE" 
    TCGA-IB-7888     TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891 
  "CUX2 MUTATED" "CUX2 WILD-TYPE" "CUX2 WILD-TYPE" "CUX2 WILD-TYPE" 
    TCGA-IB-7893     TCGA-IB-7897     TCGA-IB-8126     TCGA-IB-8127 
  "CUX2 MUTATED" "CUX2 WILD-TYPE" "CUX2 WILD-TYPE" "CUX2 WILD-TYPE" 
    TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS 
"CUX2 WILD-TYPE" "CUX2 WILD-TYPE" "CUX2 WILD-TYPE" "CUX2 WILD-TYPE" 
    TCGA-IB-A5ST     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
"CUX2 WILD-TYPE" "CUX2 WILD-TYPE" "CUX2 WILD-TYPE" "CUX2 WILD-TYPE" 
    TCGA-PZ-A5RE     TCGA-Q3-A5QY     TCGA-US-A779     TCGA-US-A77E 
"CUX2 WILD-TYPE" "CUX2 WILD-TYPE" "CUX2 WILD-TYPE" "CUX2 WILD-TYPE" 
    TCGA-US-A77J 
"CUX2 WILD-TYPE" 
[1] "hr=" "1"  
D16V2, continuous
                vv
clus             STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  CUX2 MUTATED          0        1         3         5         0        1
  CUX2 WILD-TYPE        1        3         8        46         2        2
D16V3, multiclass
                vv
clus             T1+T2 T3+T4
  CUX2 MUTATED       2     8
  CUX2 WILD-TYPE     4    58
D16V4, multiclass
       clus
vv      CUX2 MUTATED CUX2 WILD-TYPE
  T1+T2            2              4
  T3+T4            8             58
D16V5, binary
                cls
clus              0  1
  CUX2 MUTATED    4  6
  CUX2 WILD-TYPE 13 48
[1] "tbl2"
                cls
clus             [,1] [,2]
  CUX2 MUTATED      4    6
  CUX2 WILD-TYPE   13   48
   clus
vv  CUX2 MUTATED CUX2 WILD-TYPE
  0            4             13
  1            6             48
                vv
clus             M0 M1 MX
  CUX2 MUTATED    4  1  5
  CUX2 WILD-TYPE 35  2 25
D16V6, multiclass
    clus
vv   CUX2 MUTATED CUX2 WILD-TYPE
  M0            4             35
  M1            1              2
  MX            5             25
D16V7, binary
                cls
clus              0  1
  CUX2 MUTATED    5  5
  CUX2 WILD-TYPE 31 31
[1] "tbl2"
                cls
clus             [,1] [,2]
  CUX2 MUTATED      5    5
  CUX2 WILD-TYPE   31   31
        clus
vv       CUX2 MUTATED CUX2 WILD-TYPE
  FEMALE            5             31
  MALE              5             31
                vv
clus             PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  CUX2 MUTATED                                     7
  CUX2 WILD-TYPE                                  58
                vv
clus             PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  CUX2 MUTATED                                       2
  CUX2 WILD-TYPE                                     2
                vv
clus             PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  CUX2 MUTATED                                                  0
  CUX2 WILD-TYPE                                                2
D16V8, multiclass
                                                  clus
vv                                                 CUX2 MUTATED CUX2 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                         7             58
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                       2              2
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA            0              2
D16V9, continuous
D16V10, continuous
                vv
clus             R0 R1 RX
  CUX2 MUTATED    6  3  1
  CUX2 WILD-TYPE 36 21  1
D16V11, multiclass
    clus
vv   CUX2 MUTATED CUX2 WILD-TYPE
  R0            6             36
  R1            3             21
  RX            1              1
D16V12, continuous

Clustering(17) Variable = KRT73 MUTATION ANALYSIS
D17V1, survival
                 sevent
clus2              0  1
  KRT73 MUTATED    5  3
  KRT73 WILD-TYPE 35 26
  KRT73 MUTATED KRT73 WILD-TYPE 
              8              61 
  KRT73 MUTATED KRT73 WILD-TYPE 
              3              26 
$`KRT73 MUTATED`
TCGA-F2-6879 TCGA-F2-7276 TCGA-FB-A4P6 TCGA-FB-A7DR TCGA-HZ-7923 TCGA-HZ-A4BK 
       10.98         7.10        11.93         5.46         0.26         1.51 
TCGA-IB-7651 TCGA-IB-8127 
       19.82        17.16 

$`KRT73 WILD-TYPE`
TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-A44G TCGA-F2-A44H TCGA-FB-A4P5 TCGA-FB-A545 
        9.70        11.84         5.03        19.27         0.13        12.66 
TCGA-FB-A5VM TCGA-FB-A78T TCGA-FZ-5920 TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 
        2.47         0.03         2.01        36.20        20.81        12.89 
TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7922 
        7.66        13.02         7.89         0.92         0.66         0.13 
TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 
       12.13        11.87         0.26         0.62         0.79         0.69 
TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G 
        3.95         0.92         0.53         0.16         2.99         0.76 
TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 
        0.95         6.38        11.41        49.38         4.77        21.90 
TCGA-IB-7649 TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7888 
       15.35        15.65        27.98         4.04         3.62        43.79 
TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-8126 
       15.81        19.66        16.04         3.85        15.98         0.56 
TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG 
       10.82         9.86         7.20        15.12         0.26         1.35 
TCGA-LB-A7SX TCGA-OE-A75W TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E 
        4.18         3.62         8.12        13.68        16.80        14.14 
TCGA-US-A77J 
       18.67 

  KRT73 MUTATED KRT73 WILD-TYPE 
           0.26            0.03 
  KRT73 MUTATED KRT73 WILD-TYPE 
          19.82           49.38 
  KRT73 MUTATED KRT73 WILD-TYPE 
           9.04            7.66 
[1] "0.3 - 19.8 (9.0)" "0.0 - 49.4 (7.7)"
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
  "KRT73 MUTATED" "KRT73 WILD-TYPE" "KRT73 WILD-TYPE"   "KRT73 MUTATED" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"KRT73 WILD-TYPE" "KRT73 WILD-TYPE" "KRT73 WILD-TYPE"   "KRT73 MUTATED" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"KRT73 WILD-TYPE" "KRT73 WILD-TYPE" "KRT73 WILD-TYPE"   "KRT73 MUTATED" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"KRT73 WILD-TYPE" "KRT73 WILD-TYPE" "KRT73 WILD-TYPE" "KRT73 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"KRT73 WILD-TYPE" "KRT73 WILD-TYPE" "KRT73 WILD-TYPE" "KRT73 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"KRT73 WILD-TYPE" "KRT73 WILD-TYPE"   "KRT73 MUTATED" "KRT73 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"KRT73 WILD-TYPE" "KRT73 WILD-TYPE" "KRT73 WILD-TYPE" "KRT73 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"KRT73 WILD-TYPE" "KRT73 WILD-TYPE" "KRT73 WILD-TYPE" "KRT73 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"KRT73 WILD-TYPE" "KRT73 WILD-TYPE" "KRT73 WILD-TYPE" "KRT73 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"KRT73 WILD-TYPE"   "KRT73 MUTATED" "KRT73 WILD-TYPE" "KRT73 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"KRT73 WILD-TYPE" "KRT73 WILD-TYPE" "KRT73 WILD-TYPE"   "KRT73 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"KRT73 WILD-TYPE" "KRT73 WILD-TYPE" "KRT73 WILD-TYPE" "KRT73 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"KRT73 WILD-TYPE" "KRT73 WILD-TYPE" "KRT73 WILD-TYPE" "KRT73 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"KRT73 WILD-TYPE" "KRT73 WILD-TYPE" "KRT73 WILD-TYPE"   "KRT73 MUTATED" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"KRT73 WILD-TYPE" "KRT73 WILD-TYPE" "KRT73 WILD-TYPE" "KRT73 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"KRT73 WILD-TYPE" "KRT73 WILD-TYPE" "KRT73 WILD-TYPE" "KRT73 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"KRT73 WILD-TYPE" "KRT73 WILD-TYPE" "KRT73 WILD-TYPE" "KRT73 WILD-TYPE" 
     TCGA-US-A77J 
"KRT73 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
  "KRT73 MUTATED" "KRT73 WILD-TYPE" "KRT73 WILD-TYPE"   "KRT73 MUTATED" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"KRT73 WILD-TYPE" "KRT73 WILD-TYPE" "KRT73 WILD-TYPE"   "KRT73 MUTATED" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"KRT73 WILD-TYPE" "KRT73 WILD-TYPE" "KRT73 WILD-TYPE"   "KRT73 MUTATED" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"KRT73 WILD-TYPE" "KRT73 WILD-TYPE" "KRT73 WILD-TYPE" "KRT73 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"KRT73 WILD-TYPE" "KRT73 WILD-TYPE" "KRT73 WILD-TYPE" "KRT73 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"KRT73 WILD-TYPE" "KRT73 WILD-TYPE"   "KRT73 MUTATED" "KRT73 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"KRT73 WILD-TYPE" "KRT73 WILD-TYPE" "KRT73 WILD-TYPE" "KRT73 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"KRT73 WILD-TYPE" "KRT73 WILD-TYPE" "KRT73 WILD-TYPE" "KRT73 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"KRT73 WILD-TYPE" "KRT73 WILD-TYPE" "KRT73 WILD-TYPE" "KRT73 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"KRT73 WILD-TYPE"   "KRT73 MUTATED" "KRT73 WILD-TYPE" "KRT73 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"KRT73 WILD-TYPE" "KRT73 WILD-TYPE" "KRT73 WILD-TYPE"   "KRT73 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"KRT73 WILD-TYPE" "KRT73 WILD-TYPE" "KRT73 WILD-TYPE" "KRT73 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"KRT73 WILD-TYPE" "KRT73 WILD-TYPE" "KRT73 WILD-TYPE" "KRT73 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"KRT73 WILD-TYPE" "KRT73 WILD-TYPE" "KRT73 WILD-TYPE"   "KRT73 MUTATED" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"KRT73 WILD-TYPE" "KRT73 WILD-TYPE" "KRT73 WILD-TYPE" "KRT73 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"KRT73 WILD-TYPE" "KRT73 WILD-TYPE" "KRT73 WILD-TYPE" "KRT73 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"KRT73 WILD-TYPE" "KRT73 WILD-TYPE" "KRT73 WILD-TYPE" "KRT73 WILD-TYPE" 
     TCGA-US-A77J 
"KRT73 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
  "KRT73 MUTATED" "KRT73 WILD-TYPE" "KRT73 WILD-TYPE"   "KRT73 MUTATED" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"KRT73 WILD-TYPE" "KRT73 WILD-TYPE" "KRT73 WILD-TYPE"   "KRT73 MUTATED" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"KRT73 WILD-TYPE" "KRT73 WILD-TYPE" "KRT73 WILD-TYPE"   "KRT73 MUTATED" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"KRT73 WILD-TYPE" "KRT73 WILD-TYPE" "KRT73 WILD-TYPE" "KRT73 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"KRT73 WILD-TYPE" "KRT73 WILD-TYPE" "KRT73 WILD-TYPE" "KRT73 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"KRT73 WILD-TYPE" "KRT73 WILD-TYPE"   "KRT73 MUTATED" "KRT73 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"KRT73 WILD-TYPE" "KRT73 WILD-TYPE" "KRT73 WILD-TYPE" "KRT73 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"KRT73 WILD-TYPE" "KRT73 WILD-TYPE" "KRT73 WILD-TYPE" "KRT73 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"KRT73 WILD-TYPE" "KRT73 WILD-TYPE" "KRT73 WILD-TYPE" "KRT73 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"KRT73 WILD-TYPE"   "KRT73 MUTATED" "KRT73 WILD-TYPE" "KRT73 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"KRT73 WILD-TYPE" "KRT73 WILD-TYPE" "KRT73 WILD-TYPE"   "KRT73 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"KRT73 WILD-TYPE" "KRT73 WILD-TYPE" "KRT73 WILD-TYPE" "KRT73 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"KRT73 WILD-TYPE" "KRT73 WILD-TYPE" "KRT73 WILD-TYPE" "KRT73 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"KRT73 WILD-TYPE" "KRT73 WILD-TYPE" "KRT73 WILD-TYPE"   "KRT73 MUTATED" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"KRT73 WILD-TYPE" "KRT73 WILD-TYPE" "KRT73 WILD-TYPE" "KRT73 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"KRT73 WILD-TYPE" "KRT73 WILD-TYPE" "KRT73 WILD-TYPE" "KRT73 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"KRT73 WILD-TYPE" "KRT73 WILD-TYPE" "KRT73 WILD-TYPE" "KRT73 WILD-TYPE" 
     TCGA-US-A77J 
"KRT73 WILD-TYPE" 
[1] "hr=" "1"  
D17V2, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  KRT73 MUTATED          0        0         2         6         0        0
  KRT73 WILD-TYPE        1        4         9        45         2        3
D17V3, multiclass
                 vv
clus              T1+T2 T3+T4
  KRT73 MUTATED       0     8
  KRT73 WILD-TYPE     6    58
D17V4, multiclass
       clus
vv      KRT73 MUTATED KRT73 WILD-TYPE
  T1+T2             0               6
  T3+T4             8              58
D17V5, binary
                 cls
clus               0  1
  KRT73 MUTATED    1  6
  KRT73 WILD-TYPE 16 48
[1] "tbl2"
                 cls
clus              [,1] [,2]
  KRT73 MUTATED      1    6
  KRT73 WILD-TYPE   16   48
   clus
vv  KRT73 MUTATED KRT73 WILD-TYPE
  0             1              16
  1             6              48
                 vv
clus              M0 M1 MX
  KRT73 MUTATED    5  0  3
  KRT73 WILD-TYPE 34  3 27
D17V6, multiclass
    clus
vv   KRT73 MUTATED KRT73 WILD-TYPE
  M0             5              34
  M1             0               3
  MX             3              27
D17V7, binary
                 cls
clus               0  1
  KRT73 MUTATED    1  7
  KRT73 WILD-TYPE 35 29
[1] "tbl2"
                 cls
clus              [,1] [,2]
  KRT73 MUTATED      1    7
  KRT73 WILD-TYPE   35   29
        clus
vv       KRT73 MUTATED KRT73 WILD-TYPE
  FEMALE             1              35
  MALE               7              29
                 vv
clus              PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  KRT73 MUTATED                                     5
  KRT73 WILD-TYPE                                  60
                 vv
clus              PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  KRT73 MUTATED                                       1
  KRT73 WILD-TYPE                                     3
                 vv
clus              PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  KRT73 MUTATED                                                  1
  KRT73 WILD-TYPE                                                1
D17V8, multiclass
                                                  clus
vv                                                 KRT73 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                          5
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                        1
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA             1
                                                  clus
vv                                                 KRT73 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                           60
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                          3
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA               1
D17V9, continuous
D17V10, continuous
                 vv
clus              R0 R1 RX
  KRT73 MUTATED    5  2  0
  KRT73 WILD-TYPE 37 22  2
D17V11, multiclass
    clus
vv   KRT73 MUTATED KRT73 WILD-TYPE
  R0             5              37
  R1             2              22
  RX             0               2
D17V12, continuous

Clustering(18) Variable = TAOK2 MUTATION ANALYSIS
D18V1, survival
                 sevent
clus2              0  1
  TAOK2 MUTATED   10  6
  TAOK2 WILD-TYPE 30 23
  TAOK2 MUTATED TAOK2 WILD-TYPE 
             16              53 
  TAOK2 MUTATED TAOK2 WILD-TYPE 
              6              23 
$`TAOK2 MUTATED`
TCGA-F2-7276 TCGA-FB-A5VM TCGA-H6-8124 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 
        7.10         2.47        12.89         0.13         0.26        12.13 
TCGA-HZ-8315 TCGA-HZ-8636 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-IB-7644 TCGA-IB-7646 
        0.92         0.16         0.76         0.95        11.41         4.77 
TCGA-IB-7649 TCGA-IB-7651 TCGA-IB-7893 TCGA-IB-A5SO 
       15.35        19.82         3.85        10.82 

$`TAOK2 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-A44G TCGA-F2-A44H TCGA-FB-A4P5 
       10.98         9.70        11.84         5.03        19.27         0.13 
TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A78T TCGA-FB-A7DR TCGA-FZ-5920 TCGA-FZ-5922 
       11.93        12.66         0.03         5.46         2.01        36.20 
TCGA-FZ-5923 TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-7919 
       20.81         7.66        13.02         7.89         0.92         0.66 
TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 
       11.87         0.26         0.62         0.79         0.69         3.95 
TCGA-HZ-8317 TCGA-HZ-8638 TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7645 TCGA-IB-7647 
        0.53         2.99         6.38         1.51        49.38        21.90 
TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 
       15.65        27.98         4.04         3.62        43.79        15.81 
TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SP 
       19.66        16.04        15.98         0.56        17.16         9.86 
TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W 
        7.20        15.12         0.26         1.35         4.18         3.62 
TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
        8.12        13.68        16.80        14.14        18.67 

  TAOK2 MUTATED TAOK2 WILD-TYPE 
           0.13            0.03 
  TAOK2 MUTATED TAOK2 WILD-TYPE 
          19.82           49.38 
  TAOK2 MUTATED TAOK2 WILD-TYPE 
           4.31            8.12 
[1] "0.1 - 19.8 (4.3)" "0.0 - 49.4 (8.1)"
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"TAOK2 WILD-TYPE" "TAOK2 WILD-TYPE" "TAOK2 WILD-TYPE"   "TAOK2 MUTATED" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"TAOK2 WILD-TYPE" "TAOK2 WILD-TYPE" "TAOK2 WILD-TYPE" "TAOK2 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"TAOK2 WILD-TYPE"   "TAOK2 MUTATED" "TAOK2 WILD-TYPE" "TAOK2 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"TAOK2 WILD-TYPE" "TAOK2 WILD-TYPE" "TAOK2 WILD-TYPE"   "TAOK2 MUTATED" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"TAOK2 WILD-TYPE" "TAOK2 WILD-TYPE" "TAOK2 WILD-TYPE" "TAOK2 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"TAOK2 WILD-TYPE"   "TAOK2 MUTATED"   "TAOK2 MUTATED"   "TAOK2 MUTATED" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"TAOK2 WILD-TYPE" "TAOK2 WILD-TYPE" "TAOK2 WILD-TYPE" "TAOK2 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"TAOK2 WILD-TYPE" "TAOK2 WILD-TYPE"   "TAOK2 MUTATED" "TAOK2 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
  "TAOK2 MUTATED" "TAOK2 WILD-TYPE"   "TAOK2 MUTATED"   "TAOK2 MUTATED" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"TAOK2 WILD-TYPE" "TAOK2 WILD-TYPE"   "TAOK2 MUTATED" "TAOK2 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
  "TAOK2 MUTATED" "TAOK2 WILD-TYPE"   "TAOK2 MUTATED"   "TAOK2 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"TAOK2 WILD-TYPE" "TAOK2 WILD-TYPE" "TAOK2 WILD-TYPE" "TAOK2 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"TAOK2 WILD-TYPE" "TAOK2 WILD-TYPE" "TAOK2 WILD-TYPE" "TAOK2 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
  "TAOK2 MUTATED" "TAOK2 WILD-TYPE" "TAOK2 WILD-TYPE" "TAOK2 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
  "TAOK2 MUTATED" "TAOK2 WILD-TYPE" "TAOK2 WILD-TYPE" "TAOK2 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"TAOK2 WILD-TYPE" "TAOK2 WILD-TYPE" "TAOK2 WILD-TYPE" "TAOK2 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"TAOK2 WILD-TYPE" "TAOK2 WILD-TYPE" "TAOK2 WILD-TYPE" "TAOK2 WILD-TYPE" 
     TCGA-US-A77J 
"TAOK2 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"TAOK2 WILD-TYPE" "TAOK2 WILD-TYPE" "TAOK2 WILD-TYPE"   "TAOK2 MUTATED" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"TAOK2 WILD-TYPE" "TAOK2 WILD-TYPE" "TAOK2 WILD-TYPE" "TAOK2 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"TAOK2 WILD-TYPE"   "TAOK2 MUTATED" "TAOK2 WILD-TYPE" "TAOK2 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"TAOK2 WILD-TYPE" "TAOK2 WILD-TYPE" "TAOK2 WILD-TYPE"   "TAOK2 MUTATED" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"TAOK2 WILD-TYPE" "TAOK2 WILD-TYPE" "TAOK2 WILD-TYPE" "TAOK2 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"TAOK2 WILD-TYPE"   "TAOK2 MUTATED"   "TAOK2 MUTATED"   "TAOK2 MUTATED" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"TAOK2 WILD-TYPE" "TAOK2 WILD-TYPE" "TAOK2 WILD-TYPE" "TAOK2 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"TAOK2 WILD-TYPE" "TAOK2 WILD-TYPE"   "TAOK2 MUTATED" "TAOK2 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
  "TAOK2 MUTATED" "TAOK2 WILD-TYPE"   "TAOK2 MUTATED"   "TAOK2 MUTATED" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"TAOK2 WILD-TYPE" "TAOK2 WILD-TYPE"   "TAOK2 MUTATED" "TAOK2 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
  "TAOK2 MUTATED" "TAOK2 WILD-TYPE"   "TAOK2 MUTATED"   "TAOK2 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"TAOK2 WILD-TYPE" "TAOK2 WILD-TYPE" "TAOK2 WILD-TYPE" "TAOK2 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"TAOK2 WILD-TYPE" "TAOK2 WILD-TYPE" "TAOK2 WILD-TYPE" "TAOK2 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
  "TAOK2 MUTATED" "TAOK2 WILD-TYPE" "TAOK2 WILD-TYPE" "TAOK2 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
  "TAOK2 MUTATED" "TAOK2 WILD-TYPE" "TAOK2 WILD-TYPE" "TAOK2 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"TAOK2 WILD-TYPE" "TAOK2 WILD-TYPE" "TAOK2 WILD-TYPE" "TAOK2 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"TAOK2 WILD-TYPE" "TAOK2 WILD-TYPE" "TAOK2 WILD-TYPE" "TAOK2 WILD-TYPE" 
     TCGA-US-A77J 
"TAOK2 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"TAOK2 WILD-TYPE" "TAOK2 WILD-TYPE" "TAOK2 WILD-TYPE"   "TAOK2 MUTATED" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"TAOK2 WILD-TYPE" "TAOK2 WILD-TYPE" "TAOK2 WILD-TYPE" "TAOK2 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"TAOK2 WILD-TYPE"   "TAOK2 MUTATED" "TAOK2 WILD-TYPE" "TAOK2 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"TAOK2 WILD-TYPE" "TAOK2 WILD-TYPE" "TAOK2 WILD-TYPE"   "TAOK2 MUTATED" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"TAOK2 WILD-TYPE" "TAOK2 WILD-TYPE" "TAOK2 WILD-TYPE" "TAOK2 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"TAOK2 WILD-TYPE"   "TAOK2 MUTATED"   "TAOK2 MUTATED"   "TAOK2 MUTATED" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"TAOK2 WILD-TYPE" "TAOK2 WILD-TYPE" "TAOK2 WILD-TYPE" "TAOK2 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"TAOK2 WILD-TYPE" "TAOK2 WILD-TYPE"   "TAOK2 MUTATED" "TAOK2 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
  "TAOK2 MUTATED" "TAOK2 WILD-TYPE"   "TAOK2 MUTATED"   "TAOK2 MUTATED" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"TAOK2 WILD-TYPE" "TAOK2 WILD-TYPE"   "TAOK2 MUTATED" "TAOK2 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
  "TAOK2 MUTATED" "TAOK2 WILD-TYPE"   "TAOK2 MUTATED"   "TAOK2 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"TAOK2 WILD-TYPE" "TAOK2 WILD-TYPE" "TAOK2 WILD-TYPE" "TAOK2 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"TAOK2 WILD-TYPE" "TAOK2 WILD-TYPE" "TAOK2 WILD-TYPE" "TAOK2 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
  "TAOK2 MUTATED" "TAOK2 WILD-TYPE" "TAOK2 WILD-TYPE" "TAOK2 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
  "TAOK2 MUTATED" "TAOK2 WILD-TYPE" "TAOK2 WILD-TYPE" "TAOK2 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"TAOK2 WILD-TYPE" "TAOK2 WILD-TYPE" "TAOK2 WILD-TYPE" "TAOK2 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"TAOK2 WILD-TYPE" "TAOK2 WILD-TYPE" "TAOK2 WILD-TYPE" "TAOK2 WILD-TYPE" 
     TCGA-US-A77J 
"TAOK2 WILD-TYPE" 
[1] "hr=" "1.8"
D18V2, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  TAOK2 MUTATED          0        2         4        10         0        2
  TAOK2 WILD-TYPE        1        2         7        41         2        1
D18V3, multiclass
                 vv
clus              T1+T2 T3+T4
  TAOK2 MUTATED       3    15
  TAOK2 WILD-TYPE     3    51
D18V4, multiclass
       clus
vv      TAOK2 MUTATED TAOK2 WILD-TYPE
  T1+T2             3               3
  T3+T4            15              51
D18V5, binary
                 cls
clus               0  1
  TAOK2 MUTATED    7 11
  TAOK2 WILD-TYPE 10 43
[1] "tbl2"
                 cls
clus              [,1] [,2]
  TAOK2 MUTATED      7   11
  TAOK2 WILD-TYPE   10   43
   clus
vv  TAOK2 MUTATED TAOK2 WILD-TYPE
  0             7              10
  1            11              43
                 vv
clus              M0 M1 MX
  TAOK2 MUTATED    8  2  8
  TAOK2 WILD-TYPE 31  1 22
D18V6, multiclass
    clus
vv   TAOK2 MUTATED TAOK2 WILD-TYPE
  M0             8              31
  M1             2               1
  MX             8              22
D18V7, binary
                 cls
clus               0  1
  TAOK2 MUTATED   11  7
  TAOK2 WILD-TYPE 25 29
[1] "tbl2"
                 cls
clus              [,1] [,2]
  TAOK2 MUTATED     11    7
  TAOK2 WILD-TYPE   25   29
        clus
vv       TAOK2 MUTATED TAOK2 WILD-TYPE
  FEMALE            11              25
  MALE               7              29
                 vv
clus              PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  TAOK2 MUTATED                                    18
  TAOK2 WILD-TYPE                                  47
                 vv
clus              PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  TAOK2 MUTATED                                       0
  TAOK2 WILD-TYPE                                     4
                 vv
clus              PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  TAOK2 MUTATED                                                  0
  TAOK2 WILD-TYPE                                                2
D18V8, multiclass
                                                  clus
vv                                                 TAOK2 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                         18
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                        0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA             0
                                                  clus
vv                                                 TAOK2 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                           47
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                          4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA               2
D18V9, continuous
D18V10, continuous
                 vv
clus              R0 R1 RX
  TAOK2 MUTATED   12  6  0
  TAOK2 WILD-TYPE 30 18  2
D18V11, multiclass
    clus
vv   TAOK2 MUTATED TAOK2 WILD-TYPE
  R0            12              30
  R1             6              18
  RX             0               2
D18V12, continuous

Clustering(19) Variable = SORBS2 MUTATION ANALYSIS
D19V1, survival
                  sevent
clus2               0  1
  SORBS2 MUTATED    6  9
  SORBS2 WILD-TYPE 34 20
  SORBS2 MUTATED SORBS2 WILD-TYPE 
              15               54 
  SORBS2 MUTATED SORBS2 WILD-TYPE 
               9               20 
$`SORBS2 MUTATED`
TCGA-FB-A7DR TCGA-H6-A45N TCGA-HZ-7289 TCGA-HZ-7919 TCGA-HZ-8005 TCGA-HZ-8315 
        5.46         7.66         7.89         0.66         3.95         0.92 
TCGA-HZ-A49G TCGA-IB-7651 TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7888 
        0.76        19.82        27.98         4.04         3.62        43.79 
TCGA-IB-7889 TCGA-IB-7897 TCGA-IB-A5SQ 
       15.81        15.98         7.20 

$`SORBS2 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P5 TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FZ-5920 
        0.13        11.93        12.66         2.47         0.03         2.01 
TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 TCGA-H8-A6C1 TCGA-HZ-7918 TCGA-HZ-7922 
       36.20        20.81        12.89        13.02         0.92         0.13 
TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 
        0.26        12.13        11.87         0.26         0.62         0.79 
TCGA-HZ-8003 TCGA-HZ-8317 TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49H TCGA-HZ-A4BH 
        0.69         0.53         0.16         2.99         0.95         6.38 
TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 
        1.51        11.41        49.38         4.77        21.90        15.35 
TCGA-IB-7652 TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-8126 TCGA-IB-8127 
       15.65        19.66        16.04         3.85         0.56        17.16 
TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX 
       10.82         9.86        15.12         0.26         1.35         4.18 
TCGA-OE-A75W TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
        3.62         8.12        13.68        16.80        14.14        18.67 

  SORBS2 MUTATED SORBS2 WILD-TYPE 
            0.66             0.03 
  SORBS2 MUTATED SORBS2 WILD-TYPE 
           43.79            49.38 
  SORBS2 MUTATED SORBS2 WILD-TYPE 
            7.20             8.91 
[1] "0.7 - 43.8 (7.2)" "0.0 - 49.4 (8.9)"
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
"SORBS2 WILD-TYPE" "SORBS2 WILD-TYPE" "SORBS2 WILD-TYPE" "SORBS2 WILD-TYPE" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"SORBS2 WILD-TYPE" "SORBS2 WILD-TYPE" "SORBS2 WILD-TYPE" "SORBS2 WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
"SORBS2 WILD-TYPE" "SORBS2 WILD-TYPE" "SORBS2 WILD-TYPE"   "SORBS2 MUTATED" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"SORBS2 WILD-TYPE" "SORBS2 WILD-TYPE" "SORBS2 WILD-TYPE" "SORBS2 WILD-TYPE" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
  "SORBS2 MUTATED" "SORBS2 WILD-TYPE"   "SORBS2 MUTATED" "SORBS2 WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
  "SORBS2 MUTATED" "SORBS2 WILD-TYPE" "SORBS2 WILD-TYPE" "SORBS2 WILD-TYPE" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"SORBS2 WILD-TYPE" "SORBS2 WILD-TYPE" "SORBS2 WILD-TYPE" "SORBS2 WILD-TYPE" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
"SORBS2 WILD-TYPE"   "SORBS2 MUTATED"   "SORBS2 MUTATED" "SORBS2 WILD-TYPE" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
"SORBS2 WILD-TYPE" "SORBS2 WILD-TYPE"   "SORBS2 MUTATED" "SORBS2 WILD-TYPE" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
"SORBS2 WILD-TYPE" "SORBS2 WILD-TYPE" "SORBS2 WILD-TYPE" "SORBS2 WILD-TYPE" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
"SORBS2 WILD-TYPE" "SORBS2 WILD-TYPE" "SORBS2 WILD-TYPE"   "SORBS2 MUTATED" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
"SORBS2 WILD-TYPE"   "SORBS2 MUTATED"   "SORBS2 MUTATED"   "SORBS2 MUTATED" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
  "SORBS2 MUTATED"   "SORBS2 MUTATED" "SORBS2 WILD-TYPE" "SORBS2 WILD-TYPE" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
"SORBS2 WILD-TYPE"   "SORBS2 MUTATED" "SORBS2 WILD-TYPE" "SORBS2 WILD-TYPE" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"SORBS2 WILD-TYPE" "SORBS2 WILD-TYPE"   "SORBS2 MUTATED" "SORBS2 WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"SORBS2 WILD-TYPE" "SORBS2 WILD-TYPE" "SORBS2 WILD-TYPE" "SORBS2 WILD-TYPE" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
"SORBS2 WILD-TYPE" "SORBS2 WILD-TYPE" "SORBS2 WILD-TYPE" "SORBS2 WILD-TYPE" 
      TCGA-US-A77J 
"SORBS2 WILD-TYPE" 
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
"SORBS2 WILD-TYPE" "SORBS2 WILD-TYPE" "SORBS2 WILD-TYPE" "SORBS2 WILD-TYPE" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"SORBS2 WILD-TYPE" "SORBS2 WILD-TYPE" "SORBS2 WILD-TYPE" "SORBS2 WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
"SORBS2 WILD-TYPE" "SORBS2 WILD-TYPE" "SORBS2 WILD-TYPE"   "SORBS2 MUTATED" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"SORBS2 WILD-TYPE" "SORBS2 WILD-TYPE" "SORBS2 WILD-TYPE" "SORBS2 WILD-TYPE" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
  "SORBS2 MUTATED" "SORBS2 WILD-TYPE"   "SORBS2 MUTATED" "SORBS2 WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
  "SORBS2 MUTATED" "SORBS2 WILD-TYPE" "SORBS2 WILD-TYPE" "SORBS2 WILD-TYPE" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"SORBS2 WILD-TYPE" "SORBS2 WILD-TYPE" "SORBS2 WILD-TYPE" "SORBS2 WILD-TYPE" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
"SORBS2 WILD-TYPE"   "SORBS2 MUTATED"   "SORBS2 MUTATED" "SORBS2 WILD-TYPE" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
"SORBS2 WILD-TYPE" "SORBS2 WILD-TYPE"   "SORBS2 MUTATED" "SORBS2 WILD-TYPE" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
"SORBS2 WILD-TYPE" "SORBS2 WILD-TYPE" "SORBS2 WILD-TYPE" "SORBS2 WILD-TYPE" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
"SORBS2 WILD-TYPE" "SORBS2 WILD-TYPE" "SORBS2 WILD-TYPE"   "SORBS2 MUTATED" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
"SORBS2 WILD-TYPE"   "SORBS2 MUTATED"   "SORBS2 MUTATED"   "SORBS2 MUTATED" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
  "SORBS2 MUTATED"   "SORBS2 MUTATED" "SORBS2 WILD-TYPE" "SORBS2 WILD-TYPE" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
"SORBS2 WILD-TYPE"   "SORBS2 MUTATED" "SORBS2 WILD-TYPE" "SORBS2 WILD-TYPE" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"SORBS2 WILD-TYPE" "SORBS2 WILD-TYPE"   "SORBS2 MUTATED" "SORBS2 WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"SORBS2 WILD-TYPE" "SORBS2 WILD-TYPE" "SORBS2 WILD-TYPE" "SORBS2 WILD-TYPE" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
"SORBS2 WILD-TYPE" "SORBS2 WILD-TYPE" "SORBS2 WILD-TYPE" "SORBS2 WILD-TYPE" 
      TCGA-US-A77J 
"SORBS2 WILD-TYPE" 
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
"SORBS2 WILD-TYPE" "SORBS2 WILD-TYPE" "SORBS2 WILD-TYPE" "SORBS2 WILD-TYPE" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"SORBS2 WILD-TYPE" "SORBS2 WILD-TYPE" "SORBS2 WILD-TYPE" "SORBS2 WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
"SORBS2 WILD-TYPE" "SORBS2 WILD-TYPE" "SORBS2 WILD-TYPE"   "SORBS2 MUTATED" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"SORBS2 WILD-TYPE" "SORBS2 WILD-TYPE" "SORBS2 WILD-TYPE" "SORBS2 WILD-TYPE" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
  "SORBS2 MUTATED" "SORBS2 WILD-TYPE"   "SORBS2 MUTATED" "SORBS2 WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
  "SORBS2 MUTATED" "SORBS2 WILD-TYPE" "SORBS2 WILD-TYPE" "SORBS2 WILD-TYPE" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"SORBS2 WILD-TYPE" "SORBS2 WILD-TYPE" "SORBS2 WILD-TYPE" "SORBS2 WILD-TYPE" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
"SORBS2 WILD-TYPE"   "SORBS2 MUTATED"   "SORBS2 MUTATED" "SORBS2 WILD-TYPE" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
"SORBS2 WILD-TYPE" "SORBS2 WILD-TYPE"   "SORBS2 MUTATED" "SORBS2 WILD-TYPE" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
"SORBS2 WILD-TYPE" "SORBS2 WILD-TYPE" "SORBS2 WILD-TYPE" "SORBS2 WILD-TYPE" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
"SORBS2 WILD-TYPE" "SORBS2 WILD-TYPE" "SORBS2 WILD-TYPE"   "SORBS2 MUTATED" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
"SORBS2 WILD-TYPE"   "SORBS2 MUTATED"   "SORBS2 MUTATED"   "SORBS2 MUTATED" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
  "SORBS2 MUTATED"   "SORBS2 MUTATED" "SORBS2 WILD-TYPE" "SORBS2 WILD-TYPE" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
"SORBS2 WILD-TYPE"   "SORBS2 MUTATED" "SORBS2 WILD-TYPE" "SORBS2 WILD-TYPE" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"SORBS2 WILD-TYPE" "SORBS2 WILD-TYPE"   "SORBS2 MUTATED" "SORBS2 WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"SORBS2 WILD-TYPE" "SORBS2 WILD-TYPE" "SORBS2 WILD-TYPE" "SORBS2 WILD-TYPE" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
"SORBS2 WILD-TYPE" "SORBS2 WILD-TYPE" "SORBS2 WILD-TYPE" "SORBS2 WILD-TYPE" 
      TCGA-US-A77J 
"SORBS2 WILD-TYPE" 
[1] "hr=" "1.3"
D19V2, continuous
                  vv
clus               STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  SORBS2 MUTATED          0        1         3        11         0        0
  SORBS2 WILD-TYPE        1        3         8        40         2        3
D19V3, multiclass
                  vv
clus               T1+T2 T3+T4
  SORBS2 MUTATED       2    13
  SORBS2 WILD-TYPE     4    53
D19V4, multiclass
       clus
vv      SORBS2 MUTATED SORBS2 WILD-TYPE
  T1+T2              2                4
  T3+T4             13               53
D19V5, binary
                  cls
clus                0  1
  SORBS2 MUTATED    3 11
  SORBS2 WILD-TYPE 14 43
[1] "tbl2"
                  cls
clus               [,1] [,2]
  SORBS2 MUTATED      3   11
  SORBS2 WILD-TYPE   14   43
   clus
vv  SORBS2 MUTATED SORBS2 WILD-TYPE
  0              3               14
  1             11               43
                  vv
clus               M0 M1 MX
  SORBS2 MUTATED   10  0  5
  SORBS2 WILD-TYPE 29  3 25
D19V6, multiclass
    clus
vv   SORBS2 MUTATED SORBS2 WILD-TYPE
  M0             10               29
  M1              0                3
  MX              5               25
D19V7, binary
                  cls
clus                0  1
  SORBS2 MUTATED   11  4
  SORBS2 WILD-TYPE 25 32
[1] "tbl2"
                  cls
clus               [,1] [,2]
  SORBS2 MUTATED     11    4
  SORBS2 WILD-TYPE   25   32
        clus
vv       SORBS2 MUTATED SORBS2 WILD-TYPE
  FEMALE             11               25
  MALE                4               32
                  vv
clus               PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  SORBS2 MUTATED                                    12
  SORBS2 WILD-TYPE                                  53
                  vv
clus               PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  SORBS2 MUTATED                                       2
  SORBS2 WILD-TYPE                                     2
                  vv
clus               PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  SORBS2 MUTATED                                                  1
  SORBS2 WILD-TYPE                                                1
D19V8, multiclass
                                                  clus
vv                                                 SORBS2 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                          12
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                         2
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA              1
                                                  clus
vv                                                 SORBS2 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                            53
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                           2
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                1
D19V9, continuous
D19V10, continuous
                  vv
clus               R0 R1 RX
  SORBS2 MUTATED    7  6  1
  SORBS2 WILD-TYPE 35 18  1
D19V11, multiclass
    clus
vv   SORBS2 MUTATED SORBS2 WILD-TYPE
  R0              7               35
  R1              6               18
  RX              1                1
D19V12, continuous

Clustering(20) Variable = ATG16L2 MUTATION ANALYSIS
D20V1, survival
                   sevent
clus2                0  1
  ATG16L2 MUTATED    2  3
  ATG16L2 WILD-TYPE 38 26
  ATG16L2 MUTATED ATG16L2 WILD-TYPE 
                5                64 
  ATG16L2 MUTATED ATG16L2 WILD-TYPE 
                3                26 
$`ATG16L2 MUTATED`
TCGA-F2-6880 TCGA-H6-A45N TCGA-HZ-8001 TCGA-IB-7886 TCGA-IB-7897 
        9.70         7.66         0.62         4.04        15.98 

$`ATG16L2 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H TCGA-FB-A4P5 
       10.98        11.84         7.10         5.03        19.27         0.13 
TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR TCGA-FZ-5920 
       11.93        12.66         2.47         0.03         5.46         2.01 
TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 TCGA-H8-A6C1 TCGA-HZ-7289 TCGA-HZ-7918 
       36.20        20.81        12.89        13.02         7.89         0.92 
TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 
        0.66         0.13         0.26        12.13        11.87         0.26 
TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8636 
        0.79         0.69         3.95         0.92         0.53         0.16 
TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 
        2.99         0.76         0.95         6.38         1.51        11.41 
TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7651 TCGA-IB-7652 
       49.38         4.77        21.90        15.35        19.82        15.65 
TCGA-IB-7885 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 
       27.98         3.62        43.79        15.81        19.66        16.04 
TCGA-IB-7893 TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ 
        3.85         0.56        17.16        10.82         9.86         7.20 
TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W TCGA-PZ-A5RE 
       15.12         0.26         1.35         4.18         3.62         8.12 
TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
       13.68        16.80        14.14        18.67 

  ATG16L2 MUTATED ATG16L2 WILD-TYPE 
             0.62              0.03 
  ATG16L2 MUTATED ATG16L2 WILD-TYPE 
            15.98             49.38 
  ATG16L2 MUTATED ATG16L2 WILD-TYPE 
            7.660             7.545 
[1] "0.6 - 16.0 (7.7)" "0.0 - 49.4 (7.5)"
       TCGA-F2-6879        TCGA-F2-6880        TCGA-F2-7273        TCGA-F2-7276 
"ATG16L2 WILD-TYPE"   "ATG16L2 MUTATED" "ATG16L2 WILD-TYPE" "ATG16L2 WILD-TYPE" 
       TCGA-F2-A44G        TCGA-F2-A44H        TCGA-FB-A4P5        TCGA-FB-A4P6 
"ATG16L2 WILD-TYPE" "ATG16L2 WILD-TYPE" "ATG16L2 WILD-TYPE" "ATG16L2 WILD-TYPE" 
       TCGA-FB-A545        TCGA-FB-A5VM        TCGA-FB-A78T        TCGA-FB-A7DR 
"ATG16L2 WILD-TYPE" "ATG16L2 WILD-TYPE" "ATG16L2 WILD-TYPE" "ATG16L2 WILD-TYPE" 
       TCGA-FZ-5920        TCGA-FZ-5922        TCGA-FZ-5923        TCGA-H6-8124 
"ATG16L2 WILD-TYPE" "ATG16L2 WILD-TYPE" "ATG16L2 WILD-TYPE" "ATG16L2 WILD-TYPE" 
       TCGA-H6-A45N        TCGA-H8-A6C1        TCGA-HZ-7289        TCGA-HZ-7918 
  "ATG16L2 MUTATED" "ATG16L2 WILD-TYPE" "ATG16L2 WILD-TYPE" "ATG16L2 WILD-TYPE" 
       TCGA-HZ-7919        TCGA-HZ-7922        TCGA-HZ-7923        TCGA-HZ-7924 
"ATG16L2 WILD-TYPE" "ATG16L2 WILD-TYPE" "ATG16L2 WILD-TYPE" "ATG16L2 WILD-TYPE" 
       TCGA-HZ-7925        TCGA-HZ-7926        TCGA-HZ-8001        TCGA-HZ-8002 
"ATG16L2 WILD-TYPE" "ATG16L2 WILD-TYPE"   "ATG16L2 MUTATED" "ATG16L2 WILD-TYPE" 
       TCGA-HZ-8003        TCGA-HZ-8005        TCGA-HZ-8315        TCGA-HZ-8317 
"ATG16L2 WILD-TYPE" "ATG16L2 WILD-TYPE" "ATG16L2 WILD-TYPE" "ATG16L2 WILD-TYPE" 
       TCGA-HZ-8636        TCGA-HZ-8638        TCGA-HZ-A49G        TCGA-HZ-A49H 
"ATG16L2 WILD-TYPE" "ATG16L2 WILD-TYPE" "ATG16L2 WILD-TYPE" "ATG16L2 WILD-TYPE" 
       TCGA-HZ-A4BH        TCGA-HZ-A4BK        TCGA-IB-7644        TCGA-IB-7645 
"ATG16L2 WILD-TYPE" "ATG16L2 WILD-TYPE" "ATG16L2 WILD-TYPE" "ATG16L2 WILD-TYPE" 
       TCGA-IB-7646        TCGA-IB-7647        TCGA-IB-7649        TCGA-IB-7651 
"ATG16L2 WILD-TYPE" "ATG16L2 WILD-TYPE" "ATG16L2 WILD-TYPE" "ATG16L2 WILD-TYPE" 
       TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-7886        TCGA-IB-7887 
"ATG16L2 WILD-TYPE" "ATG16L2 WILD-TYPE"   "ATG16L2 MUTATED" "ATG16L2 WILD-TYPE" 
       TCGA-IB-7888        TCGA-IB-7889        TCGA-IB-7890        TCGA-IB-7891 
"ATG16L2 WILD-TYPE" "ATG16L2 WILD-TYPE" "ATG16L2 WILD-TYPE" "ATG16L2 WILD-TYPE" 
       TCGA-IB-7893        TCGA-IB-7897        TCGA-IB-8126        TCGA-IB-8127 
"ATG16L2 WILD-TYPE"   "ATG16L2 MUTATED" "ATG16L2 WILD-TYPE" "ATG16L2 WILD-TYPE" 
       TCGA-IB-A5SO        TCGA-IB-A5SP        TCGA-IB-A5SQ        TCGA-IB-A5SS 
"ATG16L2 WILD-TYPE" "ATG16L2 WILD-TYPE" "ATG16L2 WILD-TYPE" "ATG16L2 WILD-TYPE" 
       TCGA-IB-A5ST        TCGA-IB-A6UG        TCGA-LB-A7SX        TCGA-OE-A75W 
"ATG16L2 WILD-TYPE" "ATG16L2 WILD-TYPE" "ATG16L2 WILD-TYPE" "ATG16L2 WILD-TYPE" 
       TCGA-PZ-A5RE        TCGA-Q3-A5QY        TCGA-US-A779        TCGA-US-A77E 
"ATG16L2 WILD-TYPE" "ATG16L2 WILD-TYPE" "ATG16L2 WILD-TYPE" "ATG16L2 WILD-TYPE" 
       TCGA-US-A77J 
"ATG16L2 WILD-TYPE" 
       TCGA-F2-6879        TCGA-F2-6880        TCGA-F2-7273        TCGA-F2-7276 
"ATG16L2 WILD-TYPE"   "ATG16L2 MUTATED" "ATG16L2 WILD-TYPE" "ATG16L2 WILD-TYPE" 
       TCGA-F2-A44G        TCGA-F2-A44H        TCGA-FB-A4P5        TCGA-FB-A4P6 
"ATG16L2 WILD-TYPE" "ATG16L2 WILD-TYPE" "ATG16L2 WILD-TYPE" "ATG16L2 WILD-TYPE" 
       TCGA-FB-A545        TCGA-FB-A5VM        TCGA-FB-A78T        TCGA-FB-A7DR 
"ATG16L2 WILD-TYPE" "ATG16L2 WILD-TYPE" "ATG16L2 WILD-TYPE" "ATG16L2 WILD-TYPE" 
       TCGA-FZ-5920        TCGA-FZ-5922        TCGA-FZ-5923        TCGA-H6-8124 
"ATG16L2 WILD-TYPE" "ATG16L2 WILD-TYPE" "ATG16L2 WILD-TYPE" "ATG16L2 WILD-TYPE" 
       TCGA-H6-A45N        TCGA-H8-A6C1        TCGA-HZ-7289        TCGA-HZ-7918 
  "ATG16L2 MUTATED" "ATG16L2 WILD-TYPE" "ATG16L2 WILD-TYPE" "ATG16L2 WILD-TYPE" 
       TCGA-HZ-7919        TCGA-HZ-7922        TCGA-HZ-7923        TCGA-HZ-7924 
"ATG16L2 WILD-TYPE" "ATG16L2 WILD-TYPE" "ATG16L2 WILD-TYPE" "ATG16L2 WILD-TYPE" 
       TCGA-HZ-7925        TCGA-HZ-7926        TCGA-HZ-8001        TCGA-HZ-8002 
"ATG16L2 WILD-TYPE" "ATG16L2 WILD-TYPE"   "ATG16L2 MUTATED" "ATG16L2 WILD-TYPE" 
       TCGA-HZ-8003        TCGA-HZ-8005        TCGA-HZ-8315        TCGA-HZ-8317 
"ATG16L2 WILD-TYPE" "ATG16L2 WILD-TYPE" "ATG16L2 WILD-TYPE" "ATG16L2 WILD-TYPE" 
       TCGA-HZ-8636        TCGA-HZ-8638        TCGA-HZ-A49G        TCGA-HZ-A49H 
"ATG16L2 WILD-TYPE" "ATG16L2 WILD-TYPE" "ATG16L2 WILD-TYPE" "ATG16L2 WILD-TYPE" 
       TCGA-HZ-A4BH        TCGA-HZ-A4BK        TCGA-IB-7644        TCGA-IB-7645 
"ATG16L2 WILD-TYPE" "ATG16L2 WILD-TYPE" "ATG16L2 WILD-TYPE" "ATG16L2 WILD-TYPE" 
       TCGA-IB-7646        TCGA-IB-7647        TCGA-IB-7649        TCGA-IB-7651 
"ATG16L2 WILD-TYPE" "ATG16L2 WILD-TYPE" "ATG16L2 WILD-TYPE" "ATG16L2 WILD-TYPE" 
       TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-7886        TCGA-IB-7887 
"ATG16L2 WILD-TYPE" "ATG16L2 WILD-TYPE"   "ATG16L2 MUTATED" "ATG16L2 WILD-TYPE" 
       TCGA-IB-7888        TCGA-IB-7889        TCGA-IB-7890        TCGA-IB-7891 
"ATG16L2 WILD-TYPE" "ATG16L2 WILD-TYPE" "ATG16L2 WILD-TYPE" "ATG16L2 WILD-TYPE" 
       TCGA-IB-7893        TCGA-IB-7897        TCGA-IB-8126        TCGA-IB-8127 
"ATG16L2 WILD-TYPE"   "ATG16L2 MUTATED" "ATG16L2 WILD-TYPE" "ATG16L2 WILD-TYPE" 
       TCGA-IB-A5SO        TCGA-IB-A5SP        TCGA-IB-A5SQ        TCGA-IB-A5SS 
"ATG16L2 WILD-TYPE" "ATG16L2 WILD-TYPE" "ATG16L2 WILD-TYPE" "ATG16L2 WILD-TYPE" 
       TCGA-IB-A5ST        TCGA-IB-A6UG        TCGA-LB-A7SX        TCGA-OE-A75W 
"ATG16L2 WILD-TYPE" "ATG16L2 WILD-TYPE" "ATG16L2 WILD-TYPE" "ATG16L2 WILD-TYPE" 
       TCGA-PZ-A5RE        TCGA-Q3-A5QY        TCGA-US-A779        TCGA-US-A77E 
"ATG16L2 WILD-TYPE" "ATG16L2 WILD-TYPE" "ATG16L2 WILD-TYPE" "ATG16L2 WILD-TYPE" 
       TCGA-US-A77J 
"ATG16L2 WILD-TYPE" 
       TCGA-F2-6879        TCGA-F2-6880        TCGA-F2-7273        TCGA-F2-7276 
"ATG16L2 WILD-TYPE"   "ATG16L2 MUTATED" "ATG16L2 WILD-TYPE" "ATG16L2 WILD-TYPE" 
       TCGA-F2-A44G        TCGA-F2-A44H        TCGA-FB-A4P5        TCGA-FB-A4P6 
"ATG16L2 WILD-TYPE" "ATG16L2 WILD-TYPE" "ATG16L2 WILD-TYPE" "ATG16L2 WILD-TYPE" 
       TCGA-FB-A545        TCGA-FB-A5VM        TCGA-FB-A78T        TCGA-FB-A7DR 
"ATG16L2 WILD-TYPE" "ATG16L2 WILD-TYPE" "ATG16L2 WILD-TYPE" "ATG16L2 WILD-TYPE" 
       TCGA-FZ-5920        TCGA-FZ-5922        TCGA-FZ-5923        TCGA-H6-8124 
"ATG16L2 WILD-TYPE" "ATG16L2 WILD-TYPE" "ATG16L2 WILD-TYPE" "ATG16L2 WILD-TYPE" 
       TCGA-H6-A45N        TCGA-H8-A6C1        TCGA-HZ-7289        TCGA-HZ-7918 
  "ATG16L2 MUTATED" "ATG16L2 WILD-TYPE" "ATG16L2 WILD-TYPE" "ATG16L2 WILD-TYPE" 
       TCGA-HZ-7919        TCGA-HZ-7922        TCGA-HZ-7923        TCGA-HZ-7924 
"ATG16L2 WILD-TYPE" "ATG16L2 WILD-TYPE" "ATG16L2 WILD-TYPE" "ATG16L2 WILD-TYPE" 
       TCGA-HZ-7925        TCGA-HZ-7926        TCGA-HZ-8001        TCGA-HZ-8002 
"ATG16L2 WILD-TYPE" "ATG16L2 WILD-TYPE"   "ATG16L2 MUTATED" "ATG16L2 WILD-TYPE" 
       TCGA-HZ-8003        TCGA-HZ-8005        TCGA-HZ-8315        TCGA-HZ-8317 
"ATG16L2 WILD-TYPE" "ATG16L2 WILD-TYPE" "ATG16L2 WILD-TYPE" "ATG16L2 WILD-TYPE" 
       TCGA-HZ-8636        TCGA-HZ-8638        TCGA-HZ-A49G        TCGA-HZ-A49H 
"ATG16L2 WILD-TYPE" "ATG16L2 WILD-TYPE" "ATG16L2 WILD-TYPE" "ATG16L2 WILD-TYPE" 
       TCGA-HZ-A4BH        TCGA-HZ-A4BK        TCGA-IB-7644        TCGA-IB-7645 
"ATG16L2 WILD-TYPE" "ATG16L2 WILD-TYPE" "ATG16L2 WILD-TYPE" "ATG16L2 WILD-TYPE" 
       TCGA-IB-7646        TCGA-IB-7647        TCGA-IB-7649        TCGA-IB-7651 
"ATG16L2 WILD-TYPE" "ATG16L2 WILD-TYPE" "ATG16L2 WILD-TYPE" "ATG16L2 WILD-TYPE" 
       TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-7886        TCGA-IB-7887 
"ATG16L2 WILD-TYPE" "ATG16L2 WILD-TYPE"   "ATG16L2 MUTATED" "ATG16L2 WILD-TYPE" 
       TCGA-IB-7888        TCGA-IB-7889        TCGA-IB-7890        TCGA-IB-7891 
"ATG16L2 WILD-TYPE" "ATG16L2 WILD-TYPE" "ATG16L2 WILD-TYPE" "ATG16L2 WILD-TYPE" 
       TCGA-IB-7893        TCGA-IB-7897        TCGA-IB-8126        TCGA-IB-8127 
"ATG16L2 WILD-TYPE"   "ATG16L2 MUTATED" "ATG16L2 WILD-TYPE" "ATG16L2 WILD-TYPE" 
       TCGA-IB-A5SO        TCGA-IB-A5SP        TCGA-IB-A5SQ        TCGA-IB-A5SS 
"ATG16L2 WILD-TYPE" "ATG16L2 WILD-TYPE" "ATG16L2 WILD-TYPE" "ATG16L2 WILD-TYPE" 
       TCGA-IB-A5ST        TCGA-IB-A6UG        TCGA-LB-A7SX        TCGA-OE-A75W 
"ATG16L2 WILD-TYPE" "ATG16L2 WILD-TYPE" "ATG16L2 WILD-TYPE" "ATG16L2 WILD-TYPE" 
       TCGA-PZ-A5RE        TCGA-Q3-A5QY        TCGA-US-A779        TCGA-US-A77E 
"ATG16L2 WILD-TYPE" "ATG16L2 WILD-TYPE" "ATG16L2 WILD-TYPE" "ATG16L2 WILD-TYPE" 
       TCGA-US-A77J 
"ATG16L2 WILD-TYPE" 
[1] "hr=" "2.4"
D20V2, continuous
                   vv
clus                STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  ATG16L2 MUTATED          0        0         0         4         1        0
  ATG16L2 WILD-TYPE        1        4        11        47         1        3
D20V3, multiclass
                   vv
clus                T1+T2 T3+T4
  ATG16L2 MUTATED       0     5
  ATG16L2 WILD-TYPE     6    61
D20V4, multiclass
       clus
vv      ATG16L2 MUTATED ATG16L2 WILD-TYPE
  T1+T2               0                 6
  T3+T4               5                61
D20V5, binary
                   cls
clus                 0  1
  ATG16L2 MUTATED    1  4
  ATG16L2 WILD-TYPE 16 50
[1] "tbl2"
                   cls
clus                [,1] [,2]
  ATG16L2 MUTATED      1    4
  ATG16L2 WILD-TYPE   16   50
   clus
vv  ATG16L2 MUTATED ATG16L2 WILD-TYPE
  0               1                16
  1               4                50
                   vv
clus                M0 M1 MX
  ATG16L2 MUTATED    3  0  2
  ATG16L2 WILD-TYPE 36  3 28
D20V6, multiclass
    clus
vv   ATG16L2 MUTATED ATG16L2 WILD-TYPE
  M0               3                36
  M1               0                 3
  MX               2                28
D20V7, binary
                   cls
clus                 0  1
  ATG16L2 MUTATED    2  3
  ATG16L2 WILD-TYPE 34 33
[1] "tbl2"
                   cls
clus                [,1] [,2]
  ATG16L2 MUTATED      2    3
  ATG16L2 WILD-TYPE   34   33
        clus
vv       ATG16L2 MUTATED ATG16L2 WILD-TYPE
  FEMALE               2                34
  MALE                 3                33
                   vv
clus                PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  ATG16L2 MUTATED                                     4
  ATG16L2 WILD-TYPE                                  61
                   vv
clus                PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  ATG16L2 MUTATED                                       1
  ATG16L2 WILD-TYPE                                     3
                   vv
clus                PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  ATG16L2 MUTATED                                                  0
  ATG16L2 WILD-TYPE                                                2
D20V8, multiclass
                                                  clus
vv                                                 ATG16L2 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                            4
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                          1
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA               0
                                                  clus
vv                                                 ATG16L2 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                             61
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                            3
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                 2
D20V9, continuous
D20V10, continuous
[1] "Remove cluster labels:" "ATG16L2 MUTATED"       
clus
  ATG16L2 MUTATED ATG16L2 WILD-TYPE 
                1                18 
       TCGA-FB-A4P5        TCGA-FB-A4P6        TCGA-FB-A5VM        TCGA-FB-A78T 
"ATG16L2 WILD-TYPE" "ATG16L2 WILD-TYPE" "ATG16L2 WILD-TYPE" "ATG16L2 WILD-TYPE" 
       TCGA-FB-A7DR        TCGA-H6-8124        TCGA-H8-A6C1        TCGA-IB-7644 
"ATG16L2 WILD-TYPE" "ATG16L2 WILD-TYPE" "ATG16L2 WILD-TYPE" "ATG16L2 WILD-TYPE" 
       TCGA-IB-7649        TCGA-IB-7651        TCGA-IB-7885        TCGA-IB-7891 
"ATG16L2 WILD-TYPE" "ATG16L2 WILD-TYPE" "ATG16L2 WILD-TYPE" "ATG16L2 WILD-TYPE" 
       TCGA-IB-8126        TCGA-IB-8127        TCGA-IB-A5SS        TCGA-IB-A6UG 
"ATG16L2 WILD-TYPE" "ATG16L2 WILD-TYPE" "ATG16L2 WILD-TYPE" "ATG16L2 WILD-TYPE" 
       TCGA-LB-A7SX        TCGA-OE-A75W 
"ATG16L2 WILD-TYPE" "ATG16L2 WILD-TYPE" 
                   vv
clus                R0 R1 RX
  ATG16L2 MUTATED    3  1  0
  ATG16L2 WILD-TYPE 39 23  2
D20V11, multiclass
    clus
vv   ATG16L2 MUTATED ATG16L2 WILD-TYPE
  R0               3                39
  R1               1                23
  RX               0                 2
D20V12, continuous

Clustering(21) Variable = PTCD1 MUTATION ANALYSIS
D21V1, survival
                 sevent
clus2              0  1
  PTCD1 MUTATED    5  3
  PTCD1 WILD-TYPE 35 26
  PTCD1 MUTATED PTCD1 WILD-TYPE 
              8              61 
  PTCD1 MUTATED PTCD1 WILD-TYPE 
              3              26 
$`PTCD1 MUTATED`
TCGA-F2-7276 TCGA-FB-A4P6 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8636 
        7.10        11.93         0.79         0.69         3.95         0.16 
TCGA-IB-7893 TCGA-PZ-A5RE 
        3.85         8.12 

$`PTCD1 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-A44G TCGA-F2-A44H TCGA-FB-A4P5 
       10.98         9.70        11.84         5.03        19.27         0.13 
TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR TCGA-FZ-5920 TCGA-FZ-5922 
       12.66         2.47         0.03         5.46         2.01        36.20 
TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7289 TCGA-HZ-7918 
       20.81        12.89         7.66        13.02         7.89         0.92 
TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 
        0.66         0.13         0.26        12.13        11.87         0.26 
TCGA-HZ-8001 TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H 
        0.62         0.92         0.53         2.99         0.76         0.95 
TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 
        6.38         1.51        11.41        49.38         4.77        21.90 
TCGA-IB-7649 TCGA-IB-7651 TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 
       15.35        19.82        15.65        27.98         4.04         3.62 
TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-7897 TCGA-IB-8126 
       43.79        15.81        19.66        16.04        15.98         0.56 
TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST 
       17.16        10.82         9.86         7.20        15.12         0.26 
TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E 
        1.35         4.18         3.62        13.68        16.80        14.14 
TCGA-US-A77J 
       18.67 

  PTCD1 MUTATED PTCD1 WILD-TYPE 
           0.16            0.03 
  PTCD1 MUTATED PTCD1 WILD-TYPE 
          11.93           49.38 
  PTCD1 MUTATED PTCD1 WILD-TYPE 
            3.9             9.7 
[1] "0.2 - 11.9 (3.9)" "0.0 - 49.4 (9.7)"
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE"   "PTCD1 MUTATED" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE"   "PTCD1 MUTATED" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE"   "PTCD1 MUTATED" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
  "PTCD1 MUTATED"   "PTCD1 MUTATED" "PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
  "PTCD1 MUTATED" "PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
  "PTCD1 MUTATED" "PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
  "PTCD1 MUTATED" "PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE" 
     TCGA-US-A77J 
"PTCD1 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE"   "PTCD1 MUTATED" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE"   "PTCD1 MUTATED" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE"   "PTCD1 MUTATED" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
  "PTCD1 MUTATED"   "PTCD1 MUTATED" "PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
  "PTCD1 MUTATED" "PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
  "PTCD1 MUTATED" "PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
  "PTCD1 MUTATED" "PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE" 
     TCGA-US-A77J 
"PTCD1 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE"   "PTCD1 MUTATED" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE"   "PTCD1 MUTATED" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE"   "PTCD1 MUTATED" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
  "PTCD1 MUTATED"   "PTCD1 MUTATED" "PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
  "PTCD1 MUTATED" "PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
  "PTCD1 MUTATED" "PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
  "PTCD1 MUTATED" "PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE" 
     TCGA-US-A77J 
"PTCD1 WILD-TYPE" 
[1] "hr=" "3.1"
D21V2, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  PTCD1 MUTATED          0        0         1         6         0        1
  PTCD1 WILD-TYPE        1        4        10        45         2        2
D21V3, multiclass
                 vv
clus              T1+T2 T3+T4
  PTCD1 MUTATED       0     8
  PTCD1 WILD-TYPE     6    58
D21V4, multiclass
       clus
vv      PTCD1 MUTATED PTCD1 WILD-TYPE
  T1+T2             0               6
  T3+T4             8              58
D21V5, binary
                 cls
clus               0  1
  PTCD1 MUTATED    2  6
  PTCD1 WILD-TYPE 15 48
[1] "tbl2"
                 cls
clus              [,1] [,2]
  PTCD1 MUTATED      2    6
  PTCD1 WILD-TYPE   15   48
   clus
vv  PTCD1 MUTATED PTCD1 WILD-TYPE
  0             2              15
  1             6              48
                 vv
clus              M0 M1 MX
  PTCD1 MUTATED    2  1  5
  PTCD1 WILD-TYPE 37  2 25
D21V6, multiclass
    clus
vv   PTCD1 MUTATED PTCD1 WILD-TYPE
  M0             2              37
  M1             1               2
  MX             5              25
D21V7, binary
                 cls
clus               0  1
  PTCD1 MUTATED    3  5
  PTCD1 WILD-TYPE 33 31
[1] "tbl2"
                 cls
clus              [,1] [,2]
  PTCD1 MUTATED      3    5
  PTCD1 WILD-TYPE   33   31
        clus
vv       PTCD1 MUTATED PTCD1 WILD-TYPE
  FEMALE             3              33
  MALE               5              31
                 vv
clus              PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  PTCD1 MUTATED                                     8
  PTCD1 WILD-TYPE                                  57
                 vv
clus              PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  PTCD1 MUTATED                                       0
  PTCD1 WILD-TYPE                                     4
                 vv
clus              PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  PTCD1 MUTATED                                                  0
  PTCD1 WILD-TYPE                                                2
D21V8, multiclass
                                                  clus
vv                                                 PTCD1 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                          8
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                        0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA             0
                                                  clus
vv                                                 PTCD1 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                           57
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                          4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA               2
D21V9, continuous
[1] "Remove cluster labels:" "PTCD1 MUTATED"         
clus
  PTCD1 MUTATED PTCD1 WILD-TYPE 
              1              21 
     TCGA-F2-6880      TCGA-FB-A4P5      TCGA-FB-A5VM      TCGA-FB-A78T 
"PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE" 
     TCGA-FB-A7DR      TCGA-H6-8124      TCGA-H6-A45N      TCGA-H8-A6C1 
"PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE" 
     TCGA-IB-7644      TCGA-IB-7649      TCGA-IB-7651      TCGA-IB-7885 
"PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE" 
     TCGA-IB-7886      TCGA-IB-7887      TCGA-IB-7891      TCGA-IB-8126 
"PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE" 
     TCGA-IB-8127      TCGA-IB-A5SS      TCGA-IB-A6UG      TCGA-LB-A7SX 
"PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE" 
     TCGA-OE-A75W 
"PTCD1 WILD-TYPE" 
D21V10, continuous
[1] "Remove cluster labels:" "PTCD1 MUTATED"         
clus
  PTCD1 MUTATED PTCD1 WILD-TYPE 
              1              18 
     TCGA-FB-A4P5      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE" 
     TCGA-H6-8124      TCGA-H8-A6C1      TCGA-IB-7644      TCGA-IB-7649 
"PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE" 
     TCGA-IB-7651      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7891 
"PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE" 
     TCGA-IB-8126      TCGA-IB-8127      TCGA-IB-A5SS      TCGA-IB-A6UG 
"PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE" 
     TCGA-LB-A7SX      TCGA-OE-A75W 
"PTCD1 WILD-TYPE" "PTCD1 WILD-TYPE" 
                 vv
clus              R0 R1 RX
  PTCD1 MUTATED    4  2  0
  PTCD1 WILD-TYPE 38 22  2
D21V11, multiclass
    clus
vv   PTCD1 MUTATED PTCD1 WILD-TYPE
  R0             4              38
  R1             2              22
  RX             0               2
D21V12, continuous

Clustering(22) Variable = FAM198B MUTATION ANALYSIS
D22V1, survival
                   sevent
clus2                0  1
  FAM198B MUTATED    3  2
  FAM198B WILD-TYPE 37 27
  FAM198B MUTATED FAM198B WILD-TYPE 
                5                64 
  FAM198B MUTATED FAM198B WILD-TYPE 
                2                27 
$`FAM198B MUTATED`
TCGA-H6-8124 TCGA-HZ-8001 TCGA-IB-7651 TCGA-IB-7893 TCGA-IB-8127 
       12.89         0.62        19.82         3.85        17.16 

$`FAM198B WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P5 TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR 
        0.13        11.93        12.66         2.47         0.03         5.46 
TCGA-FZ-5920 TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7289 
        2.01        36.20        20.81         7.66        13.02         7.89 
TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 
        0.92         0.66         0.13         0.26        12.13        11.87 
TCGA-HZ-7926 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 
        0.26         0.79         0.69         3.95         0.92         0.53 
TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK 
        0.16         2.99         0.76         0.95         6.38         1.51 
TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7652 
       11.41        49.38         4.77        21.90        15.35        15.65 
TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 
       27.98         4.04         3.62        43.79        15.81        19.66 
TCGA-IB-7891 TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ 
       16.04        15.98         0.56        10.82         9.86         7.20 
TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W TCGA-PZ-A5RE 
       15.12         0.26         1.35         4.18         3.62         8.12 
TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
       13.68        16.80        14.14        18.67 

  FAM198B MUTATED FAM198B WILD-TYPE 
             0.62              0.03 
  FAM198B MUTATED FAM198B WILD-TYPE 
            19.82             49.38 
  FAM198B MUTATED FAM198B WILD-TYPE 
            12.89              7.43 
[1] "0.6 - 19.8 (12.9)" "0.0 - 49.4 (7.4)" 
       TCGA-F2-6879        TCGA-F2-6880        TCGA-F2-7273        TCGA-F2-7276 
"FAM198B WILD-TYPE" "FAM198B WILD-TYPE" "FAM198B WILD-TYPE" "FAM198B WILD-TYPE" 
       TCGA-F2-A44G        TCGA-F2-A44H        TCGA-FB-A4P5        TCGA-FB-A4P6 
"FAM198B WILD-TYPE" "FAM198B WILD-TYPE" "FAM198B WILD-TYPE" "FAM198B WILD-TYPE" 
       TCGA-FB-A545        TCGA-FB-A5VM        TCGA-FB-A78T        TCGA-FB-A7DR 
"FAM198B WILD-TYPE" "FAM198B WILD-TYPE" "FAM198B WILD-TYPE" "FAM198B WILD-TYPE" 
       TCGA-FZ-5920        TCGA-FZ-5922        TCGA-FZ-5923        TCGA-H6-8124 
"FAM198B WILD-TYPE" "FAM198B WILD-TYPE" "FAM198B WILD-TYPE"   "FAM198B MUTATED" 
       TCGA-H6-A45N        TCGA-H8-A6C1        TCGA-HZ-7289        TCGA-HZ-7918 
"FAM198B WILD-TYPE" "FAM198B WILD-TYPE" "FAM198B WILD-TYPE" "FAM198B WILD-TYPE" 
       TCGA-HZ-7919        TCGA-HZ-7922        TCGA-HZ-7923        TCGA-HZ-7924 
"FAM198B WILD-TYPE" "FAM198B WILD-TYPE" "FAM198B WILD-TYPE" "FAM198B WILD-TYPE" 
       TCGA-HZ-7925        TCGA-HZ-7926        TCGA-HZ-8001        TCGA-HZ-8002 
"FAM198B WILD-TYPE" "FAM198B WILD-TYPE"   "FAM198B MUTATED" "FAM198B WILD-TYPE" 
       TCGA-HZ-8003        TCGA-HZ-8005        TCGA-HZ-8315        TCGA-HZ-8317 
"FAM198B WILD-TYPE" "FAM198B WILD-TYPE" "FAM198B WILD-TYPE" "FAM198B WILD-TYPE" 
       TCGA-HZ-8636        TCGA-HZ-8638        TCGA-HZ-A49G        TCGA-HZ-A49H 
"FAM198B WILD-TYPE" "FAM198B WILD-TYPE" "FAM198B WILD-TYPE" "FAM198B WILD-TYPE" 
       TCGA-HZ-A4BH        TCGA-HZ-A4BK        TCGA-IB-7644        TCGA-IB-7645 
"FAM198B WILD-TYPE" "FAM198B WILD-TYPE" "FAM198B WILD-TYPE" "FAM198B WILD-TYPE" 
       TCGA-IB-7646        TCGA-IB-7647        TCGA-IB-7649        TCGA-IB-7651 
"FAM198B WILD-TYPE" "FAM198B WILD-TYPE" "FAM198B WILD-TYPE"   "FAM198B MUTATED" 
       TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-7886        TCGA-IB-7887 
"FAM198B WILD-TYPE" "FAM198B WILD-TYPE" "FAM198B WILD-TYPE" "FAM198B WILD-TYPE" 
       TCGA-IB-7888        TCGA-IB-7889        TCGA-IB-7890        TCGA-IB-7891 
"FAM198B WILD-TYPE" "FAM198B WILD-TYPE" "FAM198B WILD-TYPE" "FAM198B WILD-TYPE" 
       TCGA-IB-7893        TCGA-IB-7897        TCGA-IB-8126        TCGA-IB-8127 
  "FAM198B MUTATED" "FAM198B WILD-TYPE" "FAM198B WILD-TYPE"   "FAM198B MUTATED" 
       TCGA-IB-A5SO        TCGA-IB-A5SP        TCGA-IB-A5SQ        TCGA-IB-A5SS 
"FAM198B WILD-TYPE" "FAM198B WILD-TYPE" "FAM198B WILD-TYPE" "FAM198B WILD-TYPE" 
       TCGA-IB-A5ST        TCGA-IB-A6UG        TCGA-LB-A7SX        TCGA-OE-A75W 
"FAM198B WILD-TYPE" "FAM198B WILD-TYPE" "FAM198B WILD-TYPE" "FAM198B WILD-TYPE" 
       TCGA-PZ-A5RE        TCGA-Q3-A5QY        TCGA-US-A779        TCGA-US-A77E 
"FAM198B WILD-TYPE" "FAM198B WILD-TYPE" "FAM198B WILD-TYPE" "FAM198B WILD-TYPE" 
       TCGA-US-A77J 
"FAM198B WILD-TYPE" 
       TCGA-F2-6879        TCGA-F2-6880        TCGA-F2-7273        TCGA-F2-7276 
"FAM198B WILD-TYPE" "FAM198B WILD-TYPE" "FAM198B WILD-TYPE" "FAM198B WILD-TYPE" 
       TCGA-F2-A44G        TCGA-F2-A44H        TCGA-FB-A4P5        TCGA-FB-A4P6 
"FAM198B WILD-TYPE" "FAM198B WILD-TYPE" "FAM198B WILD-TYPE" "FAM198B WILD-TYPE" 
       TCGA-FB-A545        TCGA-FB-A5VM        TCGA-FB-A78T        TCGA-FB-A7DR 
"FAM198B WILD-TYPE" "FAM198B WILD-TYPE" "FAM198B WILD-TYPE" "FAM198B WILD-TYPE" 
       TCGA-FZ-5920        TCGA-FZ-5922        TCGA-FZ-5923        TCGA-H6-8124 
"FAM198B WILD-TYPE" "FAM198B WILD-TYPE" "FAM198B WILD-TYPE"   "FAM198B MUTATED" 
       TCGA-H6-A45N        TCGA-H8-A6C1        TCGA-HZ-7289        TCGA-HZ-7918 
"FAM198B WILD-TYPE" "FAM198B WILD-TYPE" "FAM198B WILD-TYPE" "FAM198B WILD-TYPE" 
       TCGA-HZ-7919        TCGA-HZ-7922        TCGA-HZ-7923        TCGA-HZ-7924 
"FAM198B WILD-TYPE" "FAM198B WILD-TYPE" "FAM198B WILD-TYPE" "FAM198B WILD-TYPE" 
       TCGA-HZ-7925        TCGA-HZ-7926        TCGA-HZ-8001        TCGA-HZ-8002 
"FAM198B WILD-TYPE" "FAM198B WILD-TYPE"   "FAM198B MUTATED" "FAM198B WILD-TYPE" 
       TCGA-HZ-8003        TCGA-HZ-8005        TCGA-HZ-8315        TCGA-HZ-8317 
"FAM198B WILD-TYPE" "FAM198B WILD-TYPE" "FAM198B WILD-TYPE" "FAM198B WILD-TYPE" 
       TCGA-HZ-8636        TCGA-HZ-8638        TCGA-HZ-A49G        TCGA-HZ-A49H 
"FAM198B WILD-TYPE" "FAM198B WILD-TYPE" "FAM198B WILD-TYPE" "FAM198B WILD-TYPE" 
       TCGA-HZ-A4BH        TCGA-HZ-A4BK        TCGA-IB-7644        TCGA-IB-7645 
"FAM198B WILD-TYPE" "FAM198B WILD-TYPE" "FAM198B WILD-TYPE" "FAM198B WILD-TYPE" 
       TCGA-IB-7646        TCGA-IB-7647        TCGA-IB-7649        TCGA-IB-7651 
"FAM198B WILD-TYPE" "FAM198B WILD-TYPE" "FAM198B WILD-TYPE"   "FAM198B MUTATED" 
       TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-7886        TCGA-IB-7887 
"FAM198B WILD-TYPE" "FAM198B WILD-TYPE" "FAM198B WILD-TYPE" "FAM198B WILD-TYPE" 
       TCGA-IB-7888        TCGA-IB-7889        TCGA-IB-7890        TCGA-IB-7891 
"FAM198B WILD-TYPE" "FAM198B WILD-TYPE" "FAM198B WILD-TYPE" "FAM198B WILD-TYPE" 
       TCGA-IB-7893        TCGA-IB-7897        TCGA-IB-8126        TCGA-IB-8127 
  "FAM198B MUTATED" "FAM198B WILD-TYPE" "FAM198B WILD-TYPE"   "FAM198B MUTATED" 
       TCGA-IB-A5SO        TCGA-IB-A5SP        TCGA-IB-A5SQ        TCGA-IB-A5SS 
"FAM198B WILD-TYPE" "FAM198B WILD-TYPE" "FAM198B WILD-TYPE" "FAM198B WILD-TYPE" 
       TCGA-IB-A5ST        TCGA-IB-A6UG        TCGA-LB-A7SX        TCGA-OE-A75W 
"FAM198B WILD-TYPE" "FAM198B WILD-TYPE" "FAM198B WILD-TYPE" "FAM198B WILD-TYPE" 
       TCGA-PZ-A5RE        TCGA-Q3-A5QY        TCGA-US-A779        TCGA-US-A77E 
"FAM198B WILD-TYPE" "FAM198B WILD-TYPE" "FAM198B WILD-TYPE" "FAM198B WILD-TYPE" 
       TCGA-US-A77J 
"FAM198B WILD-TYPE" 
       TCGA-F2-6879        TCGA-F2-6880        TCGA-F2-7273        TCGA-F2-7276 
"FAM198B WILD-TYPE" "FAM198B WILD-TYPE" "FAM198B WILD-TYPE" "FAM198B WILD-TYPE" 
       TCGA-F2-A44G        TCGA-F2-A44H        TCGA-FB-A4P5        TCGA-FB-A4P6 
"FAM198B WILD-TYPE" "FAM198B WILD-TYPE" "FAM198B WILD-TYPE" "FAM198B WILD-TYPE" 
       TCGA-FB-A545        TCGA-FB-A5VM        TCGA-FB-A78T        TCGA-FB-A7DR 
"FAM198B WILD-TYPE" "FAM198B WILD-TYPE" "FAM198B WILD-TYPE" "FAM198B WILD-TYPE" 
       TCGA-FZ-5920        TCGA-FZ-5922        TCGA-FZ-5923        TCGA-H6-8124 
"FAM198B WILD-TYPE" "FAM198B WILD-TYPE" "FAM198B WILD-TYPE"   "FAM198B MUTATED" 
       TCGA-H6-A45N        TCGA-H8-A6C1        TCGA-HZ-7289        TCGA-HZ-7918 
"FAM198B WILD-TYPE" "FAM198B WILD-TYPE" "FAM198B WILD-TYPE" "FAM198B WILD-TYPE" 
       TCGA-HZ-7919        TCGA-HZ-7922        TCGA-HZ-7923        TCGA-HZ-7924 
"FAM198B WILD-TYPE" "FAM198B WILD-TYPE" "FAM198B WILD-TYPE" "FAM198B WILD-TYPE" 
       TCGA-HZ-7925        TCGA-HZ-7926        TCGA-HZ-8001        TCGA-HZ-8002 
"FAM198B WILD-TYPE" "FAM198B WILD-TYPE"   "FAM198B MUTATED" "FAM198B WILD-TYPE" 
       TCGA-HZ-8003        TCGA-HZ-8005        TCGA-HZ-8315        TCGA-HZ-8317 
"FAM198B WILD-TYPE" "FAM198B WILD-TYPE" "FAM198B WILD-TYPE" "FAM198B WILD-TYPE" 
       TCGA-HZ-8636        TCGA-HZ-8638        TCGA-HZ-A49G        TCGA-HZ-A49H 
"FAM198B WILD-TYPE" "FAM198B WILD-TYPE" "FAM198B WILD-TYPE" "FAM198B WILD-TYPE" 
       TCGA-HZ-A4BH        TCGA-HZ-A4BK        TCGA-IB-7644        TCGA-IB-7645 
"FAM198B WILD-TYPE" "FAM198B WILD-TYPE" "FAM198B WILD-TYPE" "FAM198B WILD-TYPE" 
       TCGA-IB-7646        TCGA-IB-7647        TCGA-IB-7649        TCGA-IB-7651 
"FAM198B WILD-TYPE" "FAM198B WILD-TYPE" "FAM198B WILD-TYPE"   "FAM198B MUTATED" 
       TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-7886        TCGA-IB-7887 
"FAM198B WILD-TYPE" "FAM198B WILD-TYPE" "FAM198B WILD-TYPE" "FAM198B WILD-TYPE" 
       TCGA-IB-7888        TCGA-IB-7889        TCGA-IB-7890        TCGA-IB-7891 
"FAM198B WILD-TYPE" "FAM198B WILD-TYPE" "FAM198B WILD-TYPE" "FAM198B WILD-TYPE" 
       TCGA-IB-7893        TCGA-IB-7897        TCGA-IB-8126        TCGA-IB-8127 
  "FAM198B MUTATED" "FAM198B WILD-TYPE" "FAM198B WILD-TYPE"   "FAM198B MUTATED" 
       TCGA-IB-A5SO        TCGA-IB-A5SP        TCGA-IB-A5SQ        TCGA-IB-A5SS 
"FAM198B WILD-TYPE" "FAM198B WILD-TYPE" "FAM198B WILD-TYPE" "FAM198B WILD-TYPE" 
       TCGA-IB-A5ST        TCGA-IB-A6UG        TCGA-LB-A7SX        TCGA-OE-A75W 
"FAM198B WILD-TYPE" "FAM198B WILD-TYPE" "FAM198B WILD-TYPE" "FAM198B WILD-TYPE" 
       TCGA-PZ-A5RE        TCGA-Q3-A5QY        TCGA-US-A779        TCGA-US-A77E 
"FAM198B WILD-TYPE" "FAM198B WILD-TYPE" "FAM198B WILD-TYPE" "FAM198B WILD-TYPE" 
       TCGA-US-A77J 
"FAM198B WILD-TYPE" 
[1] "hr=" "1.2"
D22V2, continuous
                   vv
clus                STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  FAM198B MUTATED          0        0         1         3         1        0
  FAM198B WILD-TYPE        1        4        10        48         1        3
D22V3, multiclass
                   vv
clus                T1+T2 T3+T4
  FAM198B MUTATED       0     5
  FAM198B WILD-TYPE     6    61
D22V4, multiclass
       clus
vv      FAM198B MUTATED FAM198B WILD-TYPE
  T1+T2               0                 6
  T3+T4               5                61
D22V5, binary
                   cls
clus                 0  1
  FAM198B MUTATED    2  3
  FAM198B WILD-TYPE 15 51
[1] "tbl2"
                   cls
clus                [,1] [,2]
  FAM198B MUTATED      2    3
  FAM198B WILD-TYPE   15   51
   clus
vv  FAM198B MUTATED FAM198B WILD-TYPE
  0               2                15
  1               3                51
                   vv
clus                M0 M1 MX
  FAM198B MUTATED    4  0  1
  FAM198B WILD-TYPE 35  3 29
D22V6, multiclass
    clus
vv   FAM198B MUTATED FAM198B WILD-TYPE
  M0               4                35
  M1               0                 3
  MX               1                29
D22V7, binary
                   cls
clus                 0  1
  FAM198B MUTATED    2  3
  FAM198B WILD-TYPE 34 33
[1] "tbl2"
                   cls
clus                [,1] [,2]
  FAM198B MUTATED      2    3
  FAM198B WILD-TYPE   34   33
        clus
vv       FAM198B MUTATED FAM198B WILD-TYPE
  FEMALE               2                34
  MALE                 3                33
                   vv
clus                PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  FAM198B MUTATED                                     5
  FAM198B WILD-TYPE                                  60
                   vv
clus                PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  FAM198B MUTATED                                       0
  FAM198B WILD-TYPE                                     4
                   vv
clus                PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  FAM198B MUTATED                                                  0
  FAM198B WILD-TYPE                                                2
D22V8, multiclass
                                                  clus
vv                                                 FAM198B MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                            5
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                          0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA               0
                                                  clus
vv                                                 FAM198B WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                             60
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                            4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                 2
D22V9, continuous
D22V10, continuous
                   vv
clus                R0 R1 RX
  FAM198B MUTATED    4  1  0
  FAM198B WILD-TYPE 38 23  2
D22V11, multiclass
    clus
vv   FAM198B MUTATED FAM198B WILD-TYPE
  R0               4                38
  R1               1                23
  RX               0                 2
D22V12, continuous

Clustering(23) Variable = NDEL1 MUTATION ANALYSIS
D23V1, survival
                 sevent
clus2              0  1
  NDEL1 MUTATED    2  2
  NDEL1 WILD-TYPE 38 27
  NDEL1 MUTATED NDEL1 WILD-TYPE 
              4              65 
  NDEL1 MUTATED NDEL1 WILD-TYPE 
              2              27 
$`NDEL1 MUTATED`
TCGA-HZ-8001 TCGA-HZ-8003 TCGA-IB-7893 TCGA-IB-7897 
        0.62         0.69         3.85        15.98 

$`NDEL1 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P5 TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR 
        0.13        11.93        12.66         2.47         0.03         5.46 
TCGA-FZ-5920 TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 
        2.01        36.20        20.81        12.89         7.66        13.02 
TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 
        7.89         0.92         0.66         0.13         0.26        12.13 
TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8002 TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 
       11.87         0.26         0.79         3.95         0.92         0.53 
TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK 
        0.16         2.99         0.76         0.95         6.38         1.51 
TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7651 
       11.41        49.38         4.77        21.90        15.35        19.82 
TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 
       15.65        27.98         4.04         3.62        43.79        15.81 
TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP 
       19.66        16.04         0.56        17.16        10.82         9.86 
TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W 
        7.20        15.12         0.26         1.35         4.18         3.62 
TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
        8.12        13.68        16.80        14.14        18.67 

  NDEL1 MUTATED NDEL1 WILD-TYPE 
           0.62            0.03 
  NDEL1 MUTATED NDEL1 WILD-TYPE 
          15.98           49.38 
  NDEL1 MUTATED NDEL1 WILD-TYPE 
           2.27            7.89 
[1] "0.6 - 16.0 (2.3)" "0.0 - 49.4 (7.9)"
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"NDEL1 WILD-TYPE" "NDEL1 WILD-TYPE" "NDEL1 WILD-TYPE" "NDEL1 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"NDEL1 WILD-TYPE" "NDEL1 WILD-TYPE" "NDEL1 WILD-TYPE" "NDEL1 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"NDEL1 WILD-TYPE" "NDEL1 WILD-TYPE" "NDEL1 WILD-TYPE" "NDEL1 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"NDEL1 WILD-TYPE" "NDEL1 WILD-TYPE" "NDEL1 WILD-TYPE" "NDEL1 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"NDEL1 WILD-TYPE" "NDEL1 WILD-TYPE" "NDEL1 WILD-TYPE" "NDEL1 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"NDEL1 WILD-TYPE" "NDEL1 WILD-TYPE" "NDEL1 WILD-TYPE" "NDEL1 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"NDEL1 WILD-TYPE" "NDEL1 WILD-TYPE"   "NDEL1 MUTATED" "NDEL1 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
  "NDEL1 MUTATED" "NDEL1 WILD-TYPE" "NDEL1 WILD-TYPE" "NDEL1 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"NDEL1 WILD-TYPE" "NDEL1 WILD-TYPE" "NDEL1 WILD-TYPE" "NDEL1 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"NDEL1 WILD-TYPE" "NDEL1 WILD-TYPE" "NDEL1 WILD-TYPE" "NDEL1 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"NDEL1 WILD-TYPE" "NDEL1 WILD-TYPE" "NDEL1 WILD-TYPE" "NDEL1 WILD-TYPE" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"NDEL1 WILD-TYPE" "NDEL1 WILD-TYPE" "NDEL1 WILD-TYPE" "NDEL1 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"NDEL1 WILD-TYPE" "NDEL1 WILD-TYPE" "NDEL1 WILD-TYPE" "NDEL1 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
  "NDEL1 MUTATED"   "NDEL1 MUTATED" "NDEL1 WILD-TYPE" "NDEL1 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"NDEL1 WILD-TYPE" "NDEL1 WILD-TYPE" "NDEL1 WILD-TYPE" "NDEL1 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"NDEL1 WILD-TYPE" "NDEL1 WILD-TYPE" "NDEL1 WILD-TYPE" "NDEL1 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"NDEL1 WILD-TYPE" "NDEL1 WILD-TYPE" "NDEL1 WILD-TYPE" "NDEL1 WILD-TYPE" 
     TCGA-US-A77J 
"NDEL1 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"NDEL1 WILD-TYPE" "NDEL1 WILD-TYPE" "NDEL1 WILD-TYPE" "NDEL1 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"NDEL1 WILD-TYPE" "NDEL1 WILD-TYPE" "NDEL1 WILD-TYPE" "NDEL1 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"NDEL1 WILD-TYPE" "NDEL1 WILD-TYPE" "NDEL1 WILD-TYPE" "NDEL1 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"NDEL1 WILD-TYPE" "NDEL1 WILD-TYPE" "NDEL1 WILD-TYPE" "NDEL1 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"NDEL1 WILD-TYPE" "NDEL1 WILD-TYPE" "NDEL1 WILD-TYPE" "NDEL1 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"NDEL1 WILD-TYPE" "NDEL1 WILD-TYPE" "NDEL1 WILD-TYPE" "NDEL1 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"NDEL1 WILD-TYPE" "NDEL1 WILD-TYPE"   "NDEL1 MUTATED" "NDEL1 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
  "NDEL1 MUTATED" "NDEL1 WILD-TYPE" "NDEL1 WILD-TYPE" "NDEL1 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"NDEL1 WILD-TYPE" "NDEL1 WILD-TYPE" "NDEL1 WILD-TYPE" "NDEL1 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"NDEL1 WILD-TYPE" "NDEL1 WILD-TYPE" "NDEL1 WILD-TYPE" "NDEL1 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"NDEL1 WILD-TYPE" "NDEL1 WILD-TYPE" "NDEL1 WILD-TYPE" "NDEL1 WILD-TYPE" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"NDEL1 WILD-TYPE" "NDEL1 WILD-TYPE" "NDEL1 WILD-TYPE" "NDEL1 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"NDEL1 WILD-TYPE" "NDEL1 WILD-TYPE" "NDEL1 WILD-TYPE" "NDEL1 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
  "NDEL1 MUTATED"   "NDEL1 MUTATED" "NDEL1 WILD-TYPE" "NDEL1 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"NDEL1 WILD-TYPE" "NDEL1 WILD-TYPE" "NDEL1 WILD-TYPE" "NDEL1 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"NDEL1 WILD-TYPE" "NDEL1 WILD-TYPE" "NDEL1 WILD-TYPE" "NDEL1 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"NDEL1 WILD-TYPE" "NDEL1 WILD-TYPE" "NDEL1 WILD-TYPE" "NDEL1 WILD-TYPE" 
     TCGA-US-A77J 
"NDEL1 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"NDEL1 WILD-TYPE" "NDEL1 WILD-TYPE" "NDEL1 WILD-TYPE" "NDEL1 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"NDEL1 WILD-TYPE" "NDEL1 WILD-TYPE" "NDEL1 WILD-TYPE" "NDEL1 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"NDEL1 WILD-TYPE" "NDEL1 WILD-TYPE" "NDEL1 WILD-TYPE" "NDEL1 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"NDEL1 WILD-TYPE" "NDEL1 WILD-TYPE" "NDEL1 WILD-TYPE" "NDEL1 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"NDEL1 WILD-TYPE" "NDEL1 WILD-TYPE" "NDEL1 WILD-TYPE" "NDEL1 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"NDEL1 WILD-TYPE" "NDEL1 WILD-TYPE" "NDEL1 WILD-TYPE" "NDEL1 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"NDEL1 WILD-TYPE" "NDEL1 WILD-TYPE"   "NDEL1 MUTATED" "NDEL1 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
  "NDEL1 MUTATED" "NDEL1 WILD-TYPE" "NDEL1 WILD-TYPE" "NDEL1 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"NDEL1 WILD-TYPE" "NDEL1 WILD-TYPE" "NDEL1 WILD-TYPE" "NDEL1 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"NDEL1 WILD-TYPE" "NDEL1 WILD-TYPE" "NDEL1 WILD-TYPE" "NDEL1 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"NDEL1 WILD-TYPE" "NDEL1 WILD-TYPE" "NDEL1 WILD-TYPE" "NDEL1 WILD-TYPE" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"NDEL1 WILD-TYPE" "NDEL1 WILD-TYPE" "NDEL1 WILD-TYPE" "NDEL1 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"NDEL1 WILD-TYPE" "NDEL1 WILD-TYPE" "NDEL1 WILD-TYPE" "NDEL1 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
  "NDEL1 MUTATED"   "NDEL1 MUTATED" "NDEL1 WILD-TYPE" "NDEL1 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"NDEL1 WILD-TYPE" "NDEL1 WILD-TYPE" "NDEL1 WILD-TYPE" "NDEL1 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"NDEL1 WILD-TYPE" "NDEL1 WILD-TYPE" "NDEL1 WILD-TYPE" "NDEL1 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"NDEL1 WILD-TYPE" "NDEL1 WILD-TYPE" "NDEL1 WILD-TYPE" "NDEL1 WILD-TYPE" 
     TCGA-US-A77J 
"NDEL1 WILD-TYPE" 
[1] "hr=" "2.6"
D23V2, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  NDEL1 MUTATED          0        0         1         3         1        0
  NDEL1 WILD-TYPE        1        4        10        48         1        3
D23V3, multiclass
                 vv
clus              T1+T2 T3+T4
  NDEL1 MUTATED       0     5
  NDEL1 WILD-TYPE     6    61
D23V4, multiclass
       clus
vv      NDEL1 MUTATED NDEL1 WILD-TYPE
  T1+T2             0               6
  T3+T4             5              61
D23V5, binary
                 cls
clus               0  1
  NDEL1 MUTATED    2  3
  NDEL1 WILD-TYPE 15 51
[1] "tbl2"
                 cls
clus              [,1] [,2]
  NDEL1 MUTATED      2    3
  NDEL1 WILD-TYPE   15   51
   clus
vv  NDEL1 MUTATED NDEL1 WILD-TYPE
  0             2              15
  1             3              51
                 vv
clus              M0 M1 MX
  NDEL1 MUTATED    2  0  3
  NDEL1 WILD-TYPE 37  3 27
D23V6, multiclass
    clus
vv   NDEL1 MUTATED NDEL1 WILD-TYPE
  M0             2              37
  M1             0               3
  MX             3              27
D23V7, binary
                 cls
clus               0  1
  NDEL1 MUTATED    3  2
  NDEL1 WILD-TYPE 33 34
[1] "tbl2"
                 cls
clus              [,1] [,2]
  NDEL1 MUTATED      3    2
  NDEL1 WILD-TYPE   33   34
        clus
vv       NDEL1 MUTATED NDEL1 WILD-TYPE
  FEMALE             3              33
  MALE               2              34
                 vv
clus              PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  NDEL1 MUTATED                                     5
  NDEL1 WILD-TYPE                                  60
                 vv
clus              PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  NDEL1 MUTATED                                       0
  NDEL1 WILD-TYPE                                     4
                 vv
clus              PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  NDEL1 MUTATED                                                  0
  NDEL1 WILD-TYPE                                                2
D23V8, multiclass
                                                  clus
vv                                                 NDEL1 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                          5
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                        0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA             0
                                                  clus
vv                                                 NDEL1 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                           60
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                          4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA               2
D23V9, continuous
D23V10, continuous
                 vv
clus              R0 R1 RX
  NDEL1 MUTATED    5  0  0
  NDEL1 WILD-TYPE 37 24  2
D23V11, multiclass
    clus
vv   NDEL1 MUTATED NDEL1 WILD-TYPE
  R0             5              37
  R1             0              24
  RX             0               2
D23V12, continuous

Clustering(24) Variable = NFIL3 MUTATION ANALYSIS
D24V1, survival
                 sevent
clus2              0  1
  NFIL3 MUTATED    5  3
  NFIL3 WILD-TYPE 35 26
  NFIL3 MUTATED NFIL3 WILD-TYPE 
              8              61 
  NFIL3 MUTATED NFIL3 WILD-TYPE 
              3              26 
$`NFIL3 MUTATED`
TCGA-F2-6880 TCGA-H6-A45N TCGA-HZ-8002 TCGA-HZ-A49G TCGA-IB-7651 TCGA-IB-A5SO 
        9.70         7.66         0.79         0.76        19.82        10.82 
TCGA-OE-A75W TCGA-US-A77E 
        3.62        14.14 

$`NFIL3 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H TCGA-FB-A4P5 
       10.98        11.84         7.10         5.03        19.27         0.13 
TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR TCGA-FZ-5920 
       11.93        12.66         2.47         0.03         5.46         2.01 
TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 TCGA-H8-A6C1 TCGA-HZ-7289 TCGA-HZ-7918 
       36.20        20.81        12.89        13.02         7.89         0.92 
TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 
        0.66         0.13         0.26        12.13        11.87         0.26 
TCGA-HZ-8001 TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8636 
        0.62         0.69         3.95         0.92         0.53         0.16 
TCGA-HZ-8638 TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7645 
        2.99         0.95         6.38         1.51        11.41        49.38 
TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7886 
        4.77        21.90        15.35        15.65        27.98         4.04 
TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-7893 
        3.62        43.79        15.81        19.66        16.04         3.85 
TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS 
       15.98         0.56        17.16         9.86         7.20        15.12 
TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 
        0.26         1.35         4.18         8.12        13.68        16.80 
TCGA-US-A77J 
       18.67 

  NFIL3 MUTATED NFIL3 WILD-TYPE 
           0.76            0.03 
  NFIL3 MUTATED NFIL3 WILD-TYPE 
          19.82           49.38 
  NFIL3 MUTATED NFIL3 WILD-TYPE 
           8.68            7.20 
[1] "0.8 - 19.8 (8.7)" "0.0 - 49.4 (7.2)"
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"NFIL3 WILD-TYPE"   "NFIL3 MUTATED" "NFIL3 WILD-TYPE" "NFIL3 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"NFIL3 WILD-TYPE" "NFIL3 WILD-TYPE" "NFIL3 WILD-TYPE" "NFIL3 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"NFIL3 WILD-TYPE" "NFIL3 WILD-TYPE" "NFIL3 WILD-TYPE" "NFIL3 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"NFIL3 WILD-TYPE" "NFIL3 WILD-TYPE" "NFIL3 WILD-TYPE" "NFIL3 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
  "NFIL3 MUTATED" "NFIL3 WILD-TYPE" "NFIL3 WILD-TYPE" "NFIL3 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"NFIL3 WILD-TYPE" "NFIL3 WILD-TYPE" "NFIL3 WILD-TYPE" "NFIL3 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"NFIL3 WILD-TYPE" "NFIL3 WILD-TYPE" "NFIL3 WILD-TYPE"   "NFIL3 MUTATED" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"NFIL3 WILD-TYPE" "NFIL3 WILD-TYPE" "NFIL3 WILD-TYPE" "NFIL3 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"NFIL3 WILD-TYPE" "NFIL3 WILD-TYPE"   "NFIL3 MUTATED" "NFIL3 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"NFIL3 WILD-TYPE" "NFIL3 WILD-TYPE" "NFIL3 WILD-TYPE" "NFIL3 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"NFIL3 WILD-TYPE" "NFIL3 WILD-TYPE" "NFIL3 WILD-TYPE"   "NFIL3 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"NFIL3 WILD-TYPE" "NFIL3 WILD-TYPE" "NFIL3 WILD-TYPE" "NFIL3 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"NFIL3 WILD-TYPE" "NFIL3 WILD-TYPE" "NFIL3 WILD-TYPE" "NFIL3 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"NFIL3 WILD-TYPE" "NFIL3 WILD-TYPE" "NFIL3 WILD-TYPE" "NFIL3 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
  "NFIL3 MUTATED" "NFIL3 WILD-TYPE" "NFIL3 WILD-TYPE" "NFIL3 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"NFIL3 WILD-TYPE" "NFIL3 WILD-TYPE" "NFIL3 WILD-TYPE"   "NFIL3 MUTATED" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"NFIL3 WILD-TYPE" "NFIL3 WILD-TYPE" "NFIL3 WILD-TYPE"   "NFIL3 MUTATED" 
     TCGA-US-A77J 
"NFIL3 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"NFIL3 WILD-TYPE"   "NFIL3 MUTATED" "NFIL3 WILD-TYPE" "NFIL3 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"NFIL3 WILD-TYPE" "NFIL3 WILD-TYPE" "NFIL3 WILD-TYPE" "NFIL3 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"NFIL3 WILD-TYPE" "NFIL3 WILD-TYPE" "NFIL3 WILD-TYPE" "NFIL3 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"NFIL3 WILD-TYPE" "NFIL3 WILD-TYPE" "NFIL3 WILD-TYPE" "NFIL3 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
  "NFIL3 MUTATED" "NFIL3 WILD-TYPE" "NFIL3 WILD-TYPE" "NFIL3 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"NFIL3 WILD-TYPE" "NFIL3 WILD-TYPE" "NFIL3 WILD-TYPE" "NFIL3 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"NFIL3 WILD-TYPE" "NFIL3 WILD-TYPE" "NFIL3 WILD-TYPE"   "NFIL3 MUTATED" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"NFIL3 WILD-TYPE" "NFIL3 WILD-TYPE" "NFIL3 WILD-TYPE" "NFIL3 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"NFIL3 WILD-TYPE" "NFIL3 WILD-TYPE"   "NFIL3 MUTATED" "NFIL3 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"NFIL3 WILD-TYPE" "NFIL3 WILD-TYPE" "NFIL3 WILD-TYPE" "NFIL3 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"NFIL3 WILD-TYPE" "NFIL3 WILD-TYPE" "NFIL3 WILD-TYPE"   "NFIL3 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"NFIL3 WILD-TYPE" "NFIL3 WILD-TYPE" "NFIL3 WILD-TYPE" "NFIL3 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"NFIL3 WILD-TYPE" "NFIL3 WILD-TYPE" "NFIL3 WILD-TYPE" "NFIL3 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"NFIL3 WILD-TYPE" "NFIL3 WILD-TYPE" "NFIL3 WILD-TYPE" "NFIL3 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
  "NFIL3 MUTATED" "NFIL3 WILD-TYPE" "NFIL3 WILD-TYPE" "NFIL3 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"NFIL3 WILD-TYPE" "NFIL3 WILD-TYPE" "NFIL3 WILD-TYPE"   "NFIL3 MUTATED" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"NFIL3 WILD-TYPE" "NFIL3 WILD-TYPE" "NFIL3 WILD-TYPE"   "NFIL3 MUTATED" 
     TCGA-US-A77J 
"NFIL3 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"NFIL3 WILD-TYPE"   "NFIL3 MUTATED" "NFIL3 WILD-TYPE" "NFIL3 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"NFIL3 WILD-TYPE" "NFIL3 WILD-TYPE" "NFIL3 WILD-TYPE" "NFIL3 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"NFIL3 WILD-TYPE" "NFIL3 WILD-TYPE" "NFIL3 WILD-TYPE" "NFIL3 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"NFIL3 WILD-TYPE" "NFIL3 WILD-TYPE" "NFIL3 WILD-TYPE" "NFIL3 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
  "NFIL3 MUTATED" "NFIL3 WILD-TYPE" "NFIL3 WILD-TYPE" "NFIL3 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"NFIL3 WILD-TYPE" "NFIL3 WILD-TYPE" "NFIL3 WILD-TYPE" "NFIL3 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"NFIL3 WILD-TYPE" "NFIL3 WILD-TYPE" "NFIL3 WILD-TYPE"   "NFIL3 MUTATED" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"NFIL3 WILD-TYPE" "NFIL3 WILD-TYPE" "NFIL3 WILD-TYPE" "NFIL3 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"NFIL3 WILD-TYPE" "NFIL3 WILD-TYPE"   "NFIL3 MUTATED" "NFIL3 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"NFIL3 WILD-TYPE" "NFIL3 WILD-TYPE" "NFIL3 WILD-TYPE" "NFIL3 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"NFIL3 WILD-TYPE" "NFIL3 WILD-TYPE" "NFIL3 WILD-TYPE"   "NFIL3 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"NFIL3 WILD-TYPE" "NFIL3 WILD-TYPE" "NFIL3 WILD-TYPE" "NFIL3 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"NFIL3 WILD-TYPE" "NFIL3 WILD-TYPE" "NFIL3 WILD-TYPE" "NFIL3 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"NFIL3 WILD-TYPE" "NFIL3 WILD-TYPE" "NFIL3 WILD-TYPE" "NFIL3 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
  "NFIL3 MUTATED" "NFIL3 WILD-TYPE" "NFIL3 WILD-TYPE" "NFIL3 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"NFIL3 WILD-TYPE" "NFIL3 WILD-TYPE" "NFIL3 WILD-TYPE"   "NFIL3 MUTATED" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"NFIL3 WILD-TYPE" "NFIL3 WILD-TYPE" "NFIL3 WILD-TYPE"   "NFIL3 MUTATED" 
     TCGA-US-A77J 
"NFIL3 WILD-TYPE" 
[1] "hr=" "1.2"
D24V2, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  NFIL3 MUTATED          0        0         1         8         0        0
  NFIL3 WILD-TYPE        1        4        10        43         2        3
D24V3, multiclass
                 vv
clus              T1+T2 T3+T4
  NFIL3 MUTATED       1     8
  NFIL3 WILD-TYPE     5    58
D24V4, multiclass
       clus
vv      NFIL3 MUTATED NFIL3 WILD-TYPE
  T1+T2             1               5
  T3+T4             8              58
D24V5, binary
                 cls
clus               0  1
  NFIL3 MUTATED    1  8
  NFIL3 WILD-TYPE 16 46
[1] "tbl2"
                 cls
clus              [,1] [,2]
  NFIL3 MUTATED      1    8
  NFIL3 WILD-TYPE   16   46
   clus
vv  NFIL3 MUTATED NFIL3 WILD-TYPE
  0             1              16
  1             8              46
                 vv
clus              M0 M1 MX
  NFIL3 MUTATED    4  0  5
  NFIL3 WILD-TYPE 35  3 25
D24V6, multiclass
    clus
vv   NFIL3 MUTATED NFIL3 WILD-TYPE
  M0             4              35
  M1             0               3
  MX             5              25
D24V7, binary
                 cls
clus               0  1
  NFIL3 MUTATED    3  6
  NFIL3 WILD-TYPE 33 30
[1] "tbl2"
                 cls
clus              [,1] [,2]
  NFIL3 MUTATED      3    6
  NFIL3 WILD-TYPE   33   30
        clus
vv       NFIL3 MUTATED NFIL3 WILD-TYPE
  FEMALE             3              33
  MALE               6              30
                 vv
clus              PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  NFIL3 MUTATED                                     8
  NFIL3 WILD-TYPE                                  57
                 vv
clus              PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  NFIL3 MUTATED                                       1
  NFIL3 WILD-TYPE                                     3
                 vv
clus              PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  NFIL3 MUTATED                                                  0
  NFIL3 WILD-TYPE                                                2
D24V8, multiclass
                                                  clus
vv                                                 NFIL3 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                          8
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                        1
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA             0
                                                  clus
vv                                                 NFIL3 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                           57
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                          3
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA               2
D24V9, continuous
D24V10, continuous
[1] "Remove cluster labels:" "NFIL3 MUTATED"         
clus
  NFIL3 MUTATED NFIL3 WILD-TYPE 
              2              17 
     TCGA-FB-A4P5      TCGA-FB-A4P6      TCGA-FB-A5VM      TCGA-FB-A78T 
"NFIL3 WILD-TYPE" "NFIL3 WILD-TYPE" "NFIL3 WILD-TYPE" "NFIL3 WILD-TYPE" 
     TCGA-FB-A7DR      TCGA-H6-8124      TCGA-H8-A6C1      TCGA-IB-7644 
"NFIL3 WILD-TYPE" "NFIL3 WILD-TYPE" "NFIL3 WILD-TYPE" "NFIL3 WILD-TYPE" 
     TCGA-IB-7649      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7891 
"NFIL3 WILD-TYPE" "NFIL3 WILD-TYPE" "NFIL3 WILD-TYPE" "NFIL3 WILD-TYPE" 
     TCGA-IB-8126      TCGA-IB-8127      TCGA-IB-A5SS      TCGA-IB-A6UG 
"NFIL3 WILD-TYPE" "NFIL3 WILD-TYPE" "NFIL3 WILD-TYPE" "NFIL3 WILD-TYPE" 
     TCGA-LB-A7SX 
"NFIL3 WILD-TYPE" 
                 vv
clus              R0 R1 RX
  NFIL3 MUTATED    5  3  0
  NFIL3 WILD-TYPE 37 21  2
D24V11, multiclass
    clus
vv   NFIL3 MUTATED NFIL3 WILD-TYPE
  R0             5              37
  R1             3              21
  RX             0               2
D24V12, continuous

Clustering(25) Variable = ATP13A3 MUTATION ANALYSIS
D25V1, survival
                   sevent
clus2                0  1
  ATP13A3 MUTATED    6  3
  ATP13A3 WILD-TYPE 34 26
  ATP13A3 MUTATED ATP13A3 WILD-TYPE 
                9                60 
  ATP13A3 MUTATED ATP13A3 WILD-TYPE 
                3                26 
$`ATP13A3 MUTATED`
TCGA-FB-A545 TCGA-HZ-7919 TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8638 TCGA-HZ-A49H 
       12.66         0.66         0.69         3.95         2.99         0.95 
TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-7893 
       19.66        16.04         3.85 

$`ATP13A3 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P5 TCGA-FB-A4P6 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR TCGA-FZ-5920 
        0.13        11.93         2.47         0.03         5.46         2.01 
TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7289 
       36.20        20.81        12.89         7.66        13.02         7.89 
TCGA-HZ-7918 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 
        0.92         0.13         0.26        12.13        11.87         0.26 
TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8636 TCGA-HZ-A49G 
        0.62         0.79         0.92         0.53         0.16         0.76 
TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 
        6.38         1.51        11.41        49.38         4.77        21.90 
TCGA-IB-7649 TCGA-IB-7651 TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 
       15.35        19.82        15.65        27.98         4.04         3.62 
TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO 
       43.79        15.81        15.98         0.56        17.16        10.82 
TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX 
        9.86         7.20        15.12         0.26         1.35         4.18 
TCGA-OE-A75W TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
        3.62         8.12        13.68        16.80        14.14        18.67 

  ATP13A3 MUTATED ATP13A3 WILD-TYPE 
             0.66              0.03 
  ATP13A3 MUTATED ATP13A3 WILD-TYPE 
            19.66             49.38 
  ATP13A3 MUTATED ATP13A3 WILD-TYPE 
            3.850             8.005 
[1] "0.7 - 19.7 (3.9)" "0.0 - 49.4 (8.0)"
       TCGA-F2-6879        TCGA-F2-6880        TCGA-F2-7273        TCGA-F2-7276 
"ATP13A3 WILD-TYPE" "ATP13A3 WILD-TYPE" "ATP13A3 WILD-TYPE" "ATP13A3 WILD-TYPE" 
       TCGA-F2-A44G        TCGA-F2-A44H        TCGA-FB-A4P5        TCGA-FB-A4P6 
"ATP13A3 WILD-TYPE" "ATP13A3 WILD-TYPE" "ATP13A3 WILD-TYPE" "ATP13A3 WILD-TYPE" 
       TCGA-FB-A545        TCGA-FB-A5VM        TCGA-FB-A78T        TCGA-FB-A7DR 
  "ATP13A3 MUTATED" "ATP13A3 WILD-TYPE" "ATP13A3 WILD-TYPE" "ATP13A3 WILD-TYPE" 
       TCGA-FZ-5920        TCGA-FZ-5922        TCGA-FZ-5923        TCGA-H6-8124 
"ATP13A3 WILD-TYPE" "ATP13A3 WILD-TYPE" "ATP13A3 WILD-TYPE" "ATP13A3 WILD-TYPE" 
       TCGA-H6-A45N        TCGA-H8-A6C1        TCGA-HZ-7289        TCGA-HZ-7918 
"ATP13A3 WILD-TYPE" "ATP13A3 WILD-TYPE" "ATP13A3 WILD-TYPE" "ATP13A3 WILD-TYPE" 
       TCGA-HZ-7919        TCGA-HZ-7922        TCGA-HZ-7923        TCGA-HZ-7924 
  "ATP13A3 MUTATED" "ATP13A3 WILD-TYPE" "ATP13A3 WILD-TYPE" "ATP13A3 WILD-TYPE" 
       TCGA-HZ-7925        TCGA-HZ-7926        TCGA-HZ-8001        TCGA-HZ-8002 
"ATP13A3 WILD-TYPE" "ATP13A3 WILD-TYPE" "ATP13A3 WILD-TYPE" "ATP13A3 WILD-TYPE" 
       TCGA-HZ-8003        TCGA-HZ-8005        TCGA-HZ-8315        TCGA-HZ-8317 
  "ATP13A3 MUTATED"   "ATP13A3 MUTATED" "ATP13A3 WILD-TYPE" "ATP13A3 WILD-TYPE" 
       TCGA-HZ-8636        TCGA-HZ-8638        TCGA-HZ-A49G        TCGA-HZ-A49H 
"ATP13A3 WILD-TYPE"   "ATP13A3 MUTATED" "ATP13A3 WILD-TYPE"   "ATP13A3 MUTATED" 
       TCGA-HZ-A4BH        TCGA-HZ-A4BK        TCGA-IB-7644        TCGA-IB-7645 
"ATP13A3 WILD-TYPE" "ATP13A3 WILD-TYPE" "ATP13A3 WILD-TYPE" "ATP13A3 WILD-TYPE" 
       TCGA-IB-7646        TCGA-IB-7647        TCGA-IB-7649        TCGA-IB-7651 
"ATP13A3 WILD-TYPE" "ATP13A3 WILD-TYPE" "ATP13A3 WILD-TYPE" "ATP13A3 WILD-TYPE" 
       TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-7886        TCGA-IB-7887 
"ATP13A3 WILD-TYPE" "ATP13A3 WILD-TYPE" "ATP13A3 WILD-TYPE" "ATP13A3 WILD-TYPE" 
       TCGA-IB-7888        TCGA-IB-7889        TCGA-IB-7890        TCGA-IB-7891 
"ATP13A3 WILD-TYPE" "ATP13A3 WILD-TYPE"   "ATP13A3 MUTATED"   "ATP13A3 MUTATED" 
       TCGA-IB-7893        TCGA-IB-7897        TCGA-IB-8126        TCGA-IB-8127 
  "ATP13A3 MUTATED" "ATP13A3 WILD-TYPE" "ATP13A3 WILD-TYPE" "ATP13A3 WILD-TYPE" 
       TCGA-IB-A5SO        TCGA-IB-A5SP        TCGA-IB-A5SQ        TCGA-IB-A5SS 
"ATP13A3 WILD-TYPE" "ATP13A3 WILD-TYPE" "ATP13A3 WILD-TYPE" "ATP13A3 WILD-TYPE" 
       TCGA-IB-A5ST        TCGA-IB-A6UG        TCGA-LB-A7SX        TCGA-OE-A75W 
"ATP13A3 WILD-TYPE" "ATP13A3 WILD-TYPE" "ATP13A3 WILD-TYPE" "ATP13A3 WILD-TYPE" 
       TCGA-PZ-A5RE        TCGA-Q3-A5QY        TCGA-US-A779        TCGA-US-A77E 
"ATP13A3 WILD-TYPE" "ATP13A3 WILD-TYPE" "ATP13A3 WILD-TYPE" "ATP13A3 WILD-TYPE" 
       TCGA-US-A77J 
"ATP13A3 WILD-TYPE" 
       TCGA-F2-6879        TCGA-F2-6880        TCGA-F2-7273        TCGA-F2-7276 
"ATP13A3 WILD-TYPE" "ATP13A3 WILD-TYPE" "ATP13A3 WILD-TYPE" "ATP13A3 WILD-TYPE" 
       TCGA-F2-A44G        TCGA-F2-A44H        TCGA-FB-A4P5        TCGA-FB-A4P6 
"ATP13A3 WILD-TYPE" "ATP13A3 WILD-TYPE" "ATP13A3 WILD-TYPE" "ATP13A3 WILD-TYPE" 
       TCGA-FB-A545        TCGA-FB-A5VM        TCGA-FB-A78T        TCGA-FB-A7DR 
  "ATP13A3 MUTATED" "ATP13A3 WILD-TYPE" "ATP13A3 WILD-TYPE" "ATP13A3 WILD-TYPE" 
       TCGA-FZ-5920        TCGA-FZ-5922        TCGA-FZ-5923        TCGA-H6-8124 
"ATP13A3 WILD-TYPE" "ATP13A3 WILD-TYPE" "ATP13A3 WILD-TYPE" "ATP13A3 WILD-TYPE" 
       TCGA-H6-A45N        TCGA-H8-A6C1        TCGA-HZ-7289        TCGA-HZ-7918 
"ATP13A3 WILD-TYPE" "ATP13A3 WILD-TYPE" "ATP13A3 WILD-TYPE" "ATP13A3 WILD-TYPE" 
       TCGA-HZ-7919        TCGA-HZ-7922        TCGA-HZ-7923        TCGA-HZ-7924 
  "ATP13A3 MUTATED" "ATP13A3 WILD-TYPE" "ATP13A3 WILD-TYPE" "ATP13A3 WILD-TYPE" 
       TCGA-HZ-7925        TCGA-HZ-7926        TCGA-HZ-8001        TCGA-HZ-8002 
"ATP13A3 WILD-TYPE" "ATP13A3 WILD-TYPE" "ATP13A3 WILD-TYPE" "ATP13A3 WILD-TYPE" 
       TCGA-HZ-8003        TCGA-HZ-8005        TCGA-HZ-8315        TCGA-HZ-8317 
  "ATP13A3 MUTATED"   "ATP13A3 MUTATED" "ATP13A3 WILD-TYPE" "ATP13A3 WILD-TYPE" 
       TCGA-HZ-8636        TCGA-HZ-8638        TCGA-HZ-A49G        TCGA-HZ-A49H 
"ATP13A3 WILD-TYPE"   "ATP13A3 MUTATED" "ATP13A3 WILD-TYPE"   "ATP13A3 MUTATED" 
       TCGA-HZ-A4BH        TCGA-HZ-A4BK        TCGA-IB-7644        TCGA-IB-7645 
"ATP13A3 WILD-TYPE" "ATP13A3 WILD-TYPE" "ATP13A3 WILD-TYPE" "ATP13A3 WILD-TYPE" 
       TCGA-IB-7646        TCGA-IB-7647        TCGA-IB-7649        TCGA-IB-7651 
"ATP13A3 WILD-TYPE" "ATP13A3 WILD-TYPE" "ATP13A3 WILD-TYPE" "ATP13A3 WILD-TYPE" 
       TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-7886        TCGA-IB-7887 
"ATP13A3 WILD-TYPE" "ATP13A3 WILD-TYPE" "ATP13A3 WILD-TYPE" "ATP13A3 WILD-TYPE" 
       TCGA-IB-7888        TCGA-IB-7889        TCGA-IB-7890        TCGA-IB-7891 
"ATP13A3 WILD-TYPE" "ATP13A3 WILD-TYPE"   "ATP13A3 MUTATED"   "ATP13A3 MUTATED" 
       TCGA-IB-7893        TCGA-IB-7897        TCGA-IB-8126        TCGA-IB-8127 
  "ATP13A3 MUTATED" "ATP13A3 WILD-TYPE" "ATP13A3 WILD-TYPE" "ATP13A3 WILD-TYPE" 
       TCGA-IB-A5SO        TCGA-IB-A5SP        TCGA-IB-A5SQ        TCGA-IB-A5SS 
"ATP13A3 WILD-TYPE" "ATP13A3 WILD-TYPE" "ATP13A3 WILD-TYPE" "ATP13A3 WILD-TYPE" 
       TCGA-IB-A5ST        TCGA-IB-A6UG        TCGA-LB-A7SX        TCGA-OE-A75W 
"ATP13A3 WILD-TYPE" "ATP13A3 WILD-TYPE" "ATP13A3 WILD-TYPE" "ATP13A3 WILD-TYPE" 
       TCGA-PZ-A5RE        TCGA-Q3-A5QY        TCGA-US-A779        TCGA-US-A77E 
"ATP13A3 WILD-TYPE" "ATP13A3 WILD-TYPE" "ATP13A3 WILD-TYPE" "ATP13A3 WILD-TYPE" 
       TCGA-US-A77J 
"ATP13A3 WILD-TYPE" 
       TCGA-F2-6879        TCGA-F2-6880        TCGA-F2-7273        TCGA-F2-7276 
"ATP13A3 WILD-TYPE" "ATP13A3 WILD-TYPE" "ATP13A3 WILD-TYPE" "ATP13A3 WILD-TYPE" 
       TCGA-F2-A44G        TCGA-F2-A44H        TCGA-FB-A4P5        TCGA-FB-A4P6 
"ATP13A3 WILD-TYPE" "ATP13A3 WILD-TYPE" "ATP13A3 WILD-TYPE" "ATP13A3 WILD-TYPE" 
       TCGA-FB-A545        TCGA-FB-A5VM        TCGA-FB-A78T        TCGA-FB-A7DR 
  "ATP13A3 MUTATED" "ATP13A3 WILD-TYPE" "ATP13A3 WILD-TYPE" "ATP13A3 WILD-TYPE" 
       TCGA-FZ-5920        TCGA-FZ-5922        TCGA-FZ-5923        TCGA-H6-8124 
"ATP13A3 WILD-TYPE" "ATP13A3 WILD-TYPE" "ATP13A3 WILD-TYPE" "ATP13A3 WILD-TYPE" 
       TCGA-H6-A45N        TCGA-H8-A6C1        TCGA-HZ-7289        TCGA-HZ-7918 
"ATP13A3 WILD-TYPE" "ATP13A3 WILD-TYPE" "ATP13A3 WILD-TYPE" "ATP13A3 WILD-TYPE" 
       TCGA-HZ-7919        TCGA-HZ-7922        TCGA-HZ-7923        TCGA-HZ-7924 
  "ATP13A3 MUTATED" "ATP13A3 WILD-TYPE" "ATP13A3 WILD-TYPE" "ATP13A3 WILD-TYPE" 
       TCGA-HZ-7925        TCGA-HZ-7926        TCGA-HZ-8001        TCGA-HZ-8002 
"ATP13A3 WILD-TYPE" "ATP13A3 WILD-TYPE" "ATP13A3 WILD-TYPE" "ATP13A3 WILD-TYPE" 
       TCGA-HZ-8003        TCGA-HZ-8005        TCGA-HZ-8315        TCGA-HZ-8317 
  "ATP13A3 MUTATED"   "ATP13A3 MUTATED" "ATP13A3 WILD-TYPE" "ATP13A3 WILD-TYPE" 
       TCGA-HZ-8636        TCGA-HZ-8638        TCGA-HZ-A49G        TCGA-HZ-A49H 
"ATP13A3 WILD-TYPE"   "ATP13A3 MUTATED" "ATP13A3 WILD-TYPE"   "ATP13A3 MUTATED" 
       TCGA-HZ-A4BH        TCGA-HZ-A4BK        TCGA-IB-7644        TCGA-IB-7645 
"ATP13A3 WILD-TYPE" "ATP13A3 WILD-TYPE" "ATP13A3 WILD-TYPE" "ATP13A3 WILD-TYPE" 
       TCGA-IB-7646        TCGA-IB-7647        TCGA-IB-7649        TCGA-IB-7651 
"ATP13A3 WILD-TYPE" "ATP13A3 WILD-TYPE" "ATP13A3 WILD-TYPE" "ATP13A3 WILD-TYPE" 
       TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-7886        TCGA-IB-7887 
"ATP13A3 WILD-TYPE" "ATP13A3 WILD-TYPE" "ATP13A3 WILD-TYPE" "ATP13A3 WILD-TYPE" 
       TCGA-IB-7888        TCGA-IB-7889        TCGA-IB-7890        TCGA-IB-7891 
"ATP13A3 WILD-TYPE" "ATP13A3 WILD-TYPE"   "ATP13A3 MUTATED"   "ATP13A3 MUTATED" 
       TCGA-IB-7893        TCGA-IB-7897        TCGA-IB-8126        TCGA-IB-8127 
  "ATP13A3 MUTATED" "ATP13A3 WILD-TYPE" "ATP13A3 WILD-TYPE" "ATP13A3 WILD-TYPE" 
       TCGA-IB-A5SO        TCGA-IB-A5SP        TCGA-IB-A5SQ        TCGA-IB-A5SS 
"ATP13A3 WILD-TYPE" "ATP13A3 WILD-TYPE" "ATP13A3 WILD-TYPE" "ATP13A3 WILD-TYPE" 
       TCGA-IB-A5ST        TCGA-IB-A6UG        TCGA-LB-A7SX        TCGA-OE-A75W 
"ATP13A3 WILD-TYPE" "ATP13A3 WILD-TYPE" "ATP13A3 WILD-TYPE" "ATP13A3 WILD-TYPE" 
       TCGA-PZ-A5RE        TCGA-Q3-A5QY        TCGA-US-A779        TCGA-US-A77E 
"ATP13A3 WILD-TYPE" "ATP13A3 WILD-TYPE" "ATP13A3 WILD-TYPE" "ATP13A3 WILD-TYPE" 
       TCGA-US-A77J 
"ATP13A3 WILD-TYPE" 
[1] "hr=" "1.3"
D25V2, continuous
                   vv
clus                STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  ATP13A3 MUTATED          1        1         1         6         0        0
  ATP13A3 WILD-TYPE        0        3        10        45         2        3
D25V3, multiclass
                   vv
clus                T1+T2 T3+T4
  ATP13A3 MUTATED       2     7
  ATP13A3 WILD-TYPE     4    59
D25V4, multiclass
       clus
vv      ATP13A3 MUTATED ATP13A3 WILD-TYPE
  T1+T2               2                 4
  T3+T4               7                59
D25V5, binary
                   cls
clus                 0  1
  ATP13A3 MUTATED    3  6
  ATP13A3 WILD-TYPE 14 48
[1] "tbl2"
                   cls
clus                [,1] [,2]
  ATP13A3 MUTATED      3    6
  ATP13A3 WILD-TYPE   14   48
   clus
vv  ATP13A3 MUTATED ATP13A3 WILD-TYPE
  0               3                14
  1               6                48
                   vv
clus                M0 M1 MX
  ATP13A3 MUTATED    5  0  4
  ATP13A3 WILD-TYPE 34  3 26
D25V6, multiclass
    clus
vv   ATP13A3 MUTATED ATP13A3 WILD-TYPE
  M0               5                34
  M1               0                 3
  MX               4                26
D25V7, binary
                   cls
clus                 0  1
  ATP13A3 MUTATED    5  4
  ATP13A3 WILD-TYPE 31 32
[1] "tbl2"
                   cls
clus                [,1] [,2]
  ATP13A3 MUTATED      5    4
  ATP13A3 WILD-TYPE   31   32
        clus
vv       ATP13A3 MUTATED ATP13A3 WILD-TYPE
  FEMALE               5                31
  MALE                 4                32
                   vv
clus                PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  ATP13A3 MUTATED                                     8
  ATP13A3 WILD-TYPE                                  57
                   vv
clus                PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  ATP13A3 MUTATED                                       0
  ATP13A3 WILD-TYPE                                     4
                   vv
clus                PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  ATP13A3 MUTATED                                                  1
  ATP13A3 WILD-TYPE                                                1
D25V8, multiclass
                                                  clus
vv                                                 ATP13A3 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                            8
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                          0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA               1
                                                  clus
vv                                                 ATP13A3 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                             57
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                            4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                 1
D25V9, continuous
[1] "Remove cluster labels:" "ATP13A3 MUTATED"       
clus
  ATP13A3 MUTATED ATP13A3 WILD-TYPE 
                1                21 
       TCGA-F2-6880        TCGA-FB-A4P5        TCGA-FB-A4P6        TCGA-FB-A5VM 
"ATP13A3 WILD-TYPE" "ATP13A3 WILD-TYPE" "ATP13A3 WILD-TYPE" "ATP13A3 WILD-TYPE" 
       TCGA-FB-A78T        TCGA-FB-A7DR        TCGA-H6-8124        TCGA-H6-A45N 
"ATP13A3 WILD-TYPE" "ATP13A3 WILD-TYPE" "ATP13A3 WILD-TYPE" "ATP13A3 WILD-TYPE" 
       TCGA-H8-A6C1        TCGA-IB-7644        TCGA-IB-7649        TCGA-IB-7651 
"ATP13A3 WILD-TYPE" "ATP13A3 WILD-TYPE" "ATP13A3 WILD-TYPE" "ATP13A3 WILD-TYPE" 
       TCGA-IB-7885        TCGA-IB-7886        TCGA-IB-7887        TCGA-IB-8126 
"ATP13A3 WILD-TYPE" "ATP13A3 WILD-TYPE" "ATP13A3 WILD-TYPE" "ATP13A3 WILD-TYPE" 
       TCGA-IB-8127        TCGA-IB-A5SS        TCGA-IB-A6UG        TCGA-LB-A7SX 
"ATP13A3 WILD-TYPE" "ATP13A3 WILD-TYPE" "ATP13A3 WILD-TYPE" "ATP13A3 WILD-TYPE" 
       TCGA-OE-A75W 
"ATP13A3 WILD-TYPE" 
D25V10, continuous
[1] "Remove cluster labels:" "ATP13A3 MUTATED"       
clus
  ATP13A3 MUTATED ATP13A3 WILD-TYPE 
                1                18 
       TCGA-FB-A4P5        TCGA-FB-A4P6        TCGA-FB-A5VM        TCGA-FB-A78T 
"ATP13A3 WILD-TYPE" "ATP13A3 WILD-TYPE" "ATP13A3 WILD-TYPE" "ATP13A3 WILD-TYPE" 
       TCGA-FB-A7DR        TCGA-H6-8124        TCGA-H8-A6C1        TCGA-IB-7644 
"ATP13A3 WILD-TYPE" "ATP13A3 WILD-TYPE" "ATP13A3 WILD-TYPE" "ATP13A3 WILD-TYPE" 
       TCGA-IB-7649        TCGA-IB-7651        TCGA-IB-7885        TCGA-IB-7886 
"ATP13A3 WILD-TYPE" "ATP13A3 WILD-TYPE" "ATP13A3 WILD-TYPE" "ATP13A3 WILD-TYPE" 
       TCGA-IB-8126        TCGA-IB-8127        TCGA-IB-A5SS        TCGA-IB-A6UG 
"ATP13A3 WILD-TYPE" "ATP13A3 WILD-TYPE" "ATP13A3 WILD-TYPE" "ATP13A3 WILD-TYPE" 
       TCGA-LB-A7SX        TCGA-OE-A75W 
"ATP13A3 WILD-TYPE" "ATP13A3 WILD-TYPE" 
                   vv
clus                R0 R1 RX
  ATP13A3 MUTATED    6  2  0
  ATP13A3 WILD-TYPE 36 22  2
D25V11, multiclass
    clus
vv   ATP13A3 MUTATED ATP13A3 WILD-TYPE
  R0               6                36
  R1               2                22
  RX               0                 2
D25V12, continuous

Clustering(26) Variable = IPP MUTATION ANALYSIS
D26V1, survival
               sevent
clus2            0  1
  IPP MUTATED    9  6
  IPP WILD-TYPE 31 23
  IPP MUTATED IPP WILD-TYPE 
           15            54 
  IPP MUTATED IPP WILD-TYPE 
            6            23 
$`IPP MUTATED`
TCGA-F2-A44H TCGA-FB-A4P5 TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-H6-A45N 
       19.27         0.13        11.93        12.66         2.47         7.66 
TCGA-HZ-7289 TCGA-HZ-7924 TCGA-HZ-A4BH TCGA-IB-7651 TCGA-IB-7888 TCGA-IB-7897 
        7.89        12.13         6.38        19.82        43.79        15.98 
TCGA-IB-8127 TCGA-IB-A5SQ TCGA-Q3-A5QY 
       17.16         7.20        13.68 

$`IPP WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-FB-A78T 
       10.98         9.70        11.84         7.10         5.03         0.03 
TCGA-FB-A7DR TCGA-FZ-5920 TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 TCGA-H8-A6C1 
        5.46         2.01        36.20        20.81        12.89        13.02 
TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7925 TCGA-HZ-7926 
        0.92         0.66         0.13         0.26        11.87         0.26 
TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 
        0.62         0.79         0.69         3.95         0.92         0.53 
TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BK TCGA-IB-7644 
        0.16         2.99         0.76         0.95         1.51        11.41 
TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7652 TCGA-IB-7885 
       49.38         4.77        21.90        15.35        15.65        27.98 
TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-7893 
        4.04         3.62        15.81        19.66        16.04         3.85 
TCGA-IB-8126 TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG 
        0.56        10.82         9.86        15.12         0.26         1.35 
TCGA-LB-A7SX TCGA-OE-A75W TCGA-PZ-A5RE TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
        4.18         3.62         8.12        16.80        14.14        18.67 

  IPP MUTATED IPP WILD-TYPE 
         0.13          0.03 
  IPP MUTATED IPP WILD-TYPE 
        43.79         49.38 
  IPP MUTATED IPP WILD-TYPE 
        12.13          4.90 
[1] "0.1 - 43.8 (12.1)" "0.0 - 49.4 (4.9)" 
   TCGA-F2-6879    TCGA-F2-6880    TCGA-F2-7273    TCGA-F2-7276    TCGA-F2-A44G 
"IPP WILD-TYPE" "IPP WILD-TYPE" "IPP WILD-TYPE" "IPP WILD-TYPE" "IPP WILD-TYPE" 
   TCGA-F2-A44H    TCGA-FB-A4P5    TCGA-FB-A4P6    TCGA-FB-A545    TCGA-FB-A5VM 
  "IPP MUTATED"   "IPP MUTATED"   "IPP MUTATED"   "IPP MUTATED"   "IPP MUTATED" 
   TCGA-FB-A78T    TCGA-FB-A7DR    TCGA-FZ-5920    TCGA-FZ-5922    TCGA-FZ-5923 
"IPP WILD-TYPE" "IPP WILD-TYPE" "IPP WILD-TYPE" "IPP WILD-TYPE" "IPP WILD-TYPE" 
   TCGA-H6-8124    TCGA-H6-A45N    TCGA-H8-A6C1    TCGA-HZ-7289    TCGA-HZ-7918 
"IPP WILD-TYPE"   "IPP MUTATED" "IPP WILD-TYPE"   "IPP MUTATED" "IPP WILD-TYPE" 
   TCGA-HZ-7919    TCGA-HZ-7922    TCGA-HZ-7923    TCGA-HZ-7924    TCGA-HZ-7925 
"IPP WILD-TYPE" "IPP WILD-TYPE" "IPP WILD-TYPE"   "IPP MUTATED" "IPP WILD-TYPE" 
   TCGA-HZ-7926    TCGA-HZ-8001    TCGA-HZ-8002    TCGA-HZ-8003    TCGA-HZ-8005 
"IPP WILD-TYPE" "IPP WILD-TYPE" "IPP WILD-TYPE" "IPP WILD-TYPE" "IPP WILD-TYPE" 
   TCGA-HZ-8315    TCGA-HZ-8317    TCGA-HZ-8636    TCGA-HZ-8638    TCGA-HZ-A49G 
"IPP WILD-TYPE" "IPP WILD-TYPE" "IPP WILD-TYPE" "IPP WILD-TYPE" "IPP WILD-TYPE" 
   TCGA-HZ-A49H    TCGA-HZ-A4BH    TCGA-HZ-A4BK    TCGA-IB-7644    TCGA-IB-7645 
"IPP WILD-TYPE"   "IPP MUTATED" "IPP WILD-TYPE" "IPP WILD-TYPE" "IPP WILD-TYPE" 
   TCGA-IB-7646    TCGA-IB-7647    TCGA-IB-7649    TCGA-IB-7651    TCGA-IB-7652 
"IPP WILD-TYPE" "IPP WILD-TYPE" "IPP WILD-TYPE"   "IPP MUTATED" "IPP WILD-TYPE" 
   TCGA-IB-7885    TCGA-IB-7886    TCGA-IB-7887    TCGA-IB-7888    TCGA-IB-7889 
"IPP WILD-TYPE" "IPP WILD-TYPE" "IPP WILD-TYPE"   "IPP MUTATED" "IPP WILD-TYPE" 
   TCGA-IB-7890    TCGA-IB-7891    TCGA-IB-7893    TCGA-IB-7897    TCGA-IB-8126 
"IPP WILD-TYPE" "IPP WILD-TYPE" "IPP WILD-TYPE"   "IPP MUTATED" "IPP WILD-TYPE" 
   TCGA-IB-8127    TCGA-IB-A5SO    TCGA-IB-A5SP    TCGA-IB-A5SQ    TCGA-IB-A5SS 
  "IPP MUTATED" "IPP WILD-TYPE" "IPP WILD-TYPE"   "IPP MUTATED" "IPP WILD-TYPE" 
   TCGA-IB-A5ST    TCGA-IB-A6UG    TCGA-LB-A7SX    TCGA-OE-A75W    TCGA-PZ-A5RE 
"IPP WILD-TYPE" "IPP WILD-TYPE" "IPP WILD-TYPE" "IPP WILD-TYPE" "IPP WILD-TYPE" 
   TCGA-Q3-A5QY    TCGA-US-A779    TCGA-US-A77E    TCGA-US-A77J 
  "IPP MUTATED" "IPP WILD-TYPE" "IPP WILD-TYPE" "IPP WILD-TYPE" 
   TCGA-F2-6879    TCGA-F2-6880    TCGA-F2-7273    TCGA-F2-7276    TCGA-F2-A44G 
"IPP WILD-TYPE" "IPP WILD-TYPE" "IPP WILD-TYPE" "IPP WILD-TYPE" "IPP WILD-TYPE" 
   TCGA-F2-A44H    TCGA-FB-A4P5    TCGA-FB-A4P6    TCGA-FB-A545    TCGA-FB-A5VM 
  "IPP MUTATED"   "IPP MUTATED"   "IPP MUTATED"   "IPP MUTATED"   "IPP MUTATED" 
   TCGA-FB-A78T    TCGA-FB-A7DR    TCGA-FZ-5920    TCGA-FZ-5922    TCGA-FZ-5923 
"IPP WILD-TYPE" "IPP WILD-TYPE" "IPP WILD-TYPE" "IPP WILD-TYPE" "IPP WILD-TYPE" 
   TCGA-H6-8124    TCGA-H6-A45N    TCGA-H8-A6C1    TCGA-HZ-7289    TCGA-HZ-7918 
"IPP WILD-TYPE"   "IPP MUTATED" "IPP WILD-TYPE"   "IPP MUTATED" "IPP WILD-TYPE" 
   TCGA-HZ-7919    TCGA-HZ-7922    TCGA-HZ-7923    TCGA-HZ-7924    TCGA-HZ-7925 
"IPP WILD-TYPE" "IPP WILD-TYPE" "IPP WILD-TYPE"   "IPP MUTATED" "IPP WILD-TYPE" 
   TCGA-HZ-7926    TCGA-HZ-8001    TCGA-HZ-8002    TCGA-HZ-8003    TCGA-HZ-8005 
"IPP WILD-TYPE" "IPP WILD-TYPE" "IPP WILD-TYPE" "IPP WILD-TYPE" "IPP WILD-TYPE" 
   TCGA-HZ-8315    TCGA-HZ-8317    TCGA-HZ-8636    TCGA-HZ-8638    TCGA-HZ-A49G 
"IPP WILD-TYPE" "IPP WILD-TYPE" "IPP WILD-TYPE" "IPP WILD-TYPE" "IPP WILD-TYPE" 
   TCGA-HZ-A49H    TCGA-HZ-A4BH    TCGA-HZ-A4BK    TCGA-IB-7644    TCGA-IB-7645 
"IPP WILD-TYPE"   "IPP MUTATED" "IPP WILD-TYPE" "IPP WILD-TYPE" "IPP WILD-TYPE" 
   TCGA-IB-7646    TCGA-IB-7647    TCGA-IB-7649    TCGA-IB-7651    TCGA-IB-7652 
"IPP WILD-TYPE" "IPP WILD-TYPE" "IPP WILD-TYPE"   "IPP MUTATED" "IPP WILD-TYPE" 
   TCGA-IB-7885    TCGA-IB-7886    TCGA-IB-7887    TCGA-IB-7888    TCGA-IB-7889 
"IPP WILD-TYPE" "IPP WILD-TYPE" "IPP WILD-TYPE"   "IPP MUTATED" "IPP WILD-TYPE" 
   TCGA-IB-7890    TCGA-IB-7891    TCGA-IB-7893    TCGA-IB-7897    TCGA-IB-8126 
"IPP WILD-TYPE" "IPP WILD-TYPE" "IPP WILD-TYPE"   "IPP MUTATED" "IPP WILD-TYPE" 
   TCGA-IB-8127    TCGA-IB-A5SO    TCGA-IB-A5SP    TCGA-IB-A5SQ    TCGA-IB-A5SS 
  "IPP MUTATED" "IPP WILD-TYPE" "IPP WILD-TYPE"   "IPP MUTATED" "IPP WILD-TYPE" 
   TCGA-IB-A5ST    TCGA-IB-A6UG    TCGA-LB-A7SX    TCGA-OE-A75W    TCGA-PZ-A5RE 
"IPP WILD-TYPE" "IPP WILD-TYPE" "IPP WILD-TYPE" "IPP WILD-TYPE" "IPP WILD-TYPE" 
   TCGA-Q3-A5QY    TCGA-US-A779    TCGA-US-A77E    TCGA-US-A77J 
  "IPP MUTATED" "IPP WILD-TYPE" "IPP WILD-TYPE" "IPP WILD-TYPE" 
   TCGA-F2-6879    TCGA-F2-6880    TCGA-F2-7273    TCGA-F2-7276    TCGA-F2-A44G 
"IPP WILD-TYPE" "IPP WILD-TYPE" "IPP WILD-TYPE" "IPP WILD-TYPE" "IPP WILD-TYPE" 
   TCGA-F2-A44H    TCGA-FB-A4P5    TCGA-FB-A4P6    TCGA-FB-A545    TCGA-FB-A5VM 
  "IPP MUTATED"   "IPP MUTATED"   "IPP MUTATED"   "IPP MUTATED"   "IPP MUTATED" 
   TCGA-FB-A78T    TCGA-FB-A7DR    TCGA-FZ-5920    TCGA-FZ-5922    TCGA-FZ-5923 
"IPP WILD-TYPE" "IPP WILD-TYPE" "IPP WILD-TYPE" "IPP WILD-TYPE" "IPP WILD-TYPE" 
   TCGA-H6-8124    TCGA-H6-A45N    TCGA-H8-A6C1    TCGA-HZ-7289    TCGA-HZ-7918 
"IPP WILD-TYPE"   "IPP MUTATED" "IPP WILD-TYPE"   "IPP MUTATED" "IPP WILD-TYPE" 
   TCGA-HZ-7919    TCGA-HZ-7922    TCGA-HZ-7923    TCGA-HZ-7924    TCGA-HZ-7925 
"IPP WILD-TYPE" "IPP WILD-TYPE" "IPP WILD-TYPE"   "IPP MUTATED" "IPP WILD-TYPE" 
   TCGA-HZ-7926    TCGA-HZ-8001    TCGA-HZ-8002    TCGA-HZ-8003    TCGA-HZ-8005 
"IPP WILD-TYPE" "IPP WILD-TYPE" "IPP WILD-TYPE" "IPP WILD-TYPE" "IPP WILD-TYPE" 
   TCGA-HZ-8315    TCGA-HZ-8317    TCGA-HZ-8636    TCGA-HZ-8638    TCGA-HZ-A49G 
"IPP WILD-TYPE" "IPP WILD-TYPE" "IPP WILD-TYPE" "IPP WILD-TYPE" "IPP WILD-TYPE" 
   TCGA-HZ-A49H    TCGA-HZ-A4BH    TCGA-HZ-A4BK    TCGA-IB-7644    TCGA-IB-7645 
"IPP WILD-TYPE"   "IPP MUTATED" "IPP WILD-TYPE" "IPP WILD-TYPE" "IPP WILD-TYPE" 
   TCGA-IB-7646    TCGA-IB-7647    TCGA-IB-7649    TCGA-IB-7651    TCGA-IB-7652 
"IPP WILD-TYPE" "IPP WILD-TYPE" "IPP WILD-TYPE"   "IPP MUTATED" "IPP WILD-TYPE" 
   TCGA-IB-7885    TCGA-IB-7886    TCGA-IB-7887    TCGA-IB-7888    TCGA-IB-7889 
"IPP WILD-TYPE" "IPP WILD-TYPE" "IPP WILD-TYPE"   "IPP MUTATED" "IPP WILD-TYPE" 
   TCGA-IB-7890    TCGA-IB-7891    TCGA-IB-7893    TCGA-IB-7897    TCGA-IB-8126 
"IPP WILD-TYPE" "IPP WILD-TYPE" "IPP WILD-TYPE"   "IPP MUTATED" "IPP WILD-TYPE" 
   TCGA-IB-8127    TCGA-IB-A5SO    TCGA-IB-A5SP    TCGA-IB-A5SQ    TCGA-IB-A5SS 
  "IPP MUTATED" "IPP WILD-TYPE" "IPP WILD-TYPE"   "IPP MUTATED" "IPP WILD-TYPE" 
   TCGA-IB-A5ST    TCGA-IB-A6UG    TCGA-LB-A7SX    TCGA-OE-A75W    TCGA-PZ-A5RE 
"IPP WILD-TYPE" "IPP WILD-TYPE" "IPP WILD-TYPE" "IPP WILD-TYPE" "IPP WILD-TYPE" 
   TCGA-Q3-A5QY    TCGA-US-A779    TCGA-US-A77E    TCGA-US-A77J 
  "IPP MUTATED" "IPP WILD-TYPE" "IPP WILD-TYPE" "IPP WILD-TYPE" 
[1] "hr=" "1.6"
D26V2, continuous
               vv
clus            STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  IPP MUTATED          0        2         3        10         0        0
  IPP WILD-TYPE        1        2         8        41         2        3
D26V3, multiclass
               vv
clus            T1+T2 T3+T4
  IPP MUTATED       2    13
  IPP WILD-TYPE     4    53
D26V4, multiclass
       clus
vv      IPP MUTATED IPP WILD-TYPE
  T1+T2           2             4
  T3+T4          13            53
D26V5, binary
               cls
clus             0  1
  IPP MUTATED    5 10
  IPP WILD-TYPE 12 44
[1] "tbl2"
               cls
clus            [,1] [,2]
  IPP MUTATED      5   10
  IPP WILD-TYPE   12   44
   clus
vv  IPP MUTATED IPP WILD-TYPE
  0           5            12
  1          10            44
               vv
clus            M0 M1 MX
  IPP MUTATED    8  0  7
  IPP WILD-TYPE 31  3 23
D26V6, multiclass
    clus
vv   IPP MUTATED IPP WILD-TYPE
  M0           8            31
  M1           0             3
  MX           7            23
D26V7, binary
               cls
clus             0  1
  IPP MUTATED    8  7
  IPP WILD-TYPE 28 29
[1] "tbl2"
               cls
clus            [,1] [,2]
  IPP MUTATED      8    7
  IPP WILD-TYPE   28   29
        clus
vv       IPP MUTATED IPP WILD-TYPE
  FEMALE           8            28
  MALE             7            29
               vv
clus            PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  IPP MUTATED                                    13
  IPP WILD-TYPE                                  52
               vv
clus            PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  IPP MUTATED                                       2
  IPP WILD-TYPE                                     2
               vv
clus            PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  IPP MUTATED                                                  0
  IPP WILD-TYPE                                                2
D26V8, multiclass
                                                  clus
vv                                                 IPP MUTATED IPP WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                       13            52
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                      2             2
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA           0             2
D26V9, continuous
D26V10, continuous
               vv
clus            R0 R1 RX
  IPP MUTATED    9  2  1
  IPP WILD-TYPE 33 22  1
D26V11, multiclass
    clus
vv   IPP MUTATED IPP WILD-TYPE
  R0           9            33
  R1           2            22
  RX           1             1
D26V12, continuous

Clustering(27) Variable = GAS2L2 MUTATION ANALYSIS
D27V1, survival
                  sevent
clus2               0  1
  GAS2L2 MUTATED   13  7
  GAS2L2 WILD-TYPE 27 22
  GAS2L2 MUTATED GAS2L2 WILD-TYPE 
              20               49 
  GAS2L2 MUTATED GAS2L2 WILD-TYPE 
               7               22 
$`GAS2L2 MUTATED`
TCGA-F2-7276 TCGA-F2-A44H TCGA-FB-A545 TCGA-FB-A7DR TCGA-FZ-5920 TCGA-H6-8124 
        7.10        19.27        12.66         5.46         2.01        12.89 
TCGA-H6-A45N TCGA-HZ-7289 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-8315 TCGA-HZ-A4BH 
        7.66         7.89         0.13         0.26         0.92         6.38 
TCGA-HZ-A4BK TCGA-IB-7645 TCGA-IB-7649 TCGA-IB-7651 TCGA-IB-7888 TCGA-IB-7891 
        1.51        49.38        15.35        19.82        43.79        16.04 
TCGA-IB-8126 TCGA-LB-A7SX 
        0.56         4.18 

$`GAS2L2 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-A44G TCGA-FB-A4P5 TCGA-FB-A4P6 
       10.98         9.70        11.84         5.03         0.13        11.93 
TCGA-FB-A5VM TCGA-FB-A78T TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H8-A6C1 TCGA-HZ-7918 
        2.47         0.03        36.20        20.81        13.02         0.92 
TCGA-HZ-7919 TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 
        0.66        12.13        11.87         0.26         0.62         0.79 
TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8317 TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G 
        0.69         3.95         0.53         0.16         2.99         0.76 
TCGA-HZ-A49H TCGA-IB-7644 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7652 TCGA-IB-7885 
        0.95        11.41         4.77        21.90        15.65        27.98 
TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7893 TCGA-IB-7897 
        4.04         3.62        15.81        19.66         3.85        15.98 
TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST 
       17.16        10.82         9.86         7.20        15.12         0.26 
TCGA-IB-A6UG TCGA-OE-A75W TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E 
        1.35         3.62         8.12        13.68        16.80        14.14 
TCGA-US-A77J 
       18.67 

  GAS2L2 MUTATED GAS2L2 WILD-TYPE 
            0.13             0.03 
  GAS2L2 MUTATED GAS2L2 WILD-TYPE 
           49.38            36.20 
  GAS2L2 MUTATED GAS2L2 WILD-TYPE 
            7.38             8.12 
[1] "0.1 - 49.4 (7.4)" "0.0 - 36.2 (8.1)"
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
"GAS2L2 WILD-TYPE" "GAS2L2 WILD-TYPE" "GAS2L2 WILD-TYPE"   "GAS2L2 MUTATED" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"GAS2L2 WILD-TYPE"   "GAS2L2 MUTATED" "GAS2L2 WILD-TYPE" "GAS2L2 WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
  "GAS2L2 MUTATED" "GAS2L2 WILD-TYPE" "GAS2L2 WILD-TYPE"   "GAS2L2 MUTATED" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
  "GAS2L2 MUTATED" "GAS2L2 WILD-TYPE" "GAS2L2 WILD-TYPE"   "GAS2L2 MUTATED" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
  "GAS2L2 MUTATED" "GAS2L2 WILD-TYPE"   "GAS2L2 MUTATED" "GAS2L2 WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
"GAS2L2 WILD-TYPE"   "GAS2L2 MUTATED"   "GAS2L2 MUTATED" "GAS2L2 WILD-TYPE" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"GAS2L2 WILD-TYPE" "GAS2L2 WILD-TYPE" "GAS2L2 WILD-TYPE" "GAS2L2 WILD-TYPE" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
"GAS2L2 WILD-TYPE" "GAS2L2 WILD-TYPE"   "GAS2L2 MUTATED" "GAS2L2 WILD-TYPE" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
"GAS2L2 WILD-TYPE" "GAS2L2 WILD-TYPE" "GAS2L2 WILD-TYPE" "GAS2L2 WILD-TYPE" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
  "GAS2L2 MUTATED"   "GAS2L2 MUTATED" "GAS2L2 WILD-TYPE"   "GAS2L2 MUTATED" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
"GAS2L2 WILD-TYPE" "GAS2L2 WILD-TYPE"   "GAS2L2 MUTATED"   "GAS2L2 MUTATED" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
"GAS2L2 WILD-TYPE" "GAS2L2 WILD-TYPE" "GAS2L2 WILD-TYPE" "GAS2L2 WILD-TYPE" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
  "GAS2L2 MUTATED" "GAS2L2 WILD-TYPE" "GAS2L2 WILD-TYPE"   "GAS2L2 MUTATED" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
"GAS2L2 WILD-TYPE" "GAS2L2 WILD-TYPE"   "GAS2L2 MUTATED" "GAS2L2 WILD-TYPE" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"GAS2L2 WILD-TYPE" "GAS2L2 WILD-TYPE" "GAS2L2 WILD-TYPE" "GAS2L2 WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"GAS2L2 WILD-TYPE" "GAS2L2 WILD-TYPE"   "GAS2L2 MUTATED" "GAS2L2 WILD-TYPE" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
"GAS2L2 WILD-TYPE" "GAS2L2 WILD-TYPE" "GAS2L2 WILD-TYPE" "GAS2L2 WILD-TYPE" 
      TCGA-US-A77J 
"GAS2L2 WILD-TYPE" 
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
"GAS2L2 WILD-TYPE" "GAS2L2 WILD-TYPE" "GAS2L2 WILD-TYPE"   "GAS2L2 MUTATED" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"GAS2L2 WILD-TYPE"   "GAS2L2 MUTATED" "GAS2L2 WILD-TYPE" "GAS2L2 WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
  "GAS2L2 MUTATED" "GAS2L2 WILD-TYPE" "GAS2L2 WILD-TYPE"   "GAS2L2 MUTATED" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
  "GAS2L2 MUTATED" "GAS2L2 WILD-TYPE" "GAS2L2 WILD-TYPE"   "GAS2L2 MUTATED" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
  "GAS2L2 MUTATED" "GAS2L2 WILD-TYPE"   "GAS2L2 MUTATED" "GAS2L2 WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
"GAS2L2 WILD-TYPE"   "GAS2L2 MUTATED"   "GAS2L2 MUTATED" "GAS2L2 WILD-TYPE" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"GAS2L2 WILD-TYPE" "GAS2L2 WILD-TYPE" "GAS2L2 WILD-TYPE" "GAS2L2 WILD-TYPE" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
"GAS2L2 WILD-TYPE" "GAS2L2 WILD-TYPE"   "GAS2L2 MUTATED" "GAS2L2 WILD-TYPE" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
"GAS2L2 WILD-TYPE" "GAS2L2 WILD-TYPE" "GAS2L2 WILD-TYPE" "GAS2L2 WILD-TYPE" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
  "GAS2L2 MUTATED"   "GAS2L2 MUTATED" "GAS2L2 WILD-TYPE"   "GAS2L2 MUTATED" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
"GAS2L2 WILD-TYPE" "GAS2L2 WILD-TYPE"   "GAS2L2 MUTATED"   "GAS2L2 MUTATED" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
"GAS2L2 WILD-TYPE" "GAS2L2 WILD-TYPE" "GAS2L2 WILD-TYPE" "GAS2L2 WILD-TYPE" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
  "GAS2L2 MUTATED" "GAS2L2 WILD-TYPE" "GAS2L2 WILD-TYPE"   "GAS2L2 MUTATED" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
"GAS2L2 WILD-TYPE" "GAS2L2 WILD-TYPE"   "GAS2L2 MUTATED" "GAS2L2 WILD-TYPE" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"GAS2L2 WILD-TYPE" "GAS2L2 WILD-TYPE" "GAS2L2 WILD-TYPE" "GAS2L2 WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"GAS2L2 WILD-TYPE" "GAS2L2 WILD-TYPE"   "GAS2L2 MUTATED" "GAS2L2 WILD-TYPE" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
"GAS2L2 WILD-TYPE" "GAS2L2 WILD-TYPE" "GAS2L2 WILD-TYPE" "GAS2L2 WILD-TYPE" 
      TCGA-US-A77J 
"GAS2L2 WILD-TYPE" 
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
"GAS2L2 WILD-TYPE" "GAS2L2 WILD-TYPE" "GAS2L2 WILD-TYPE"   "GAS2L2 MUTATED" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"GAS2L2 WILD-TYPE"   "GAS2L2 MUTATED" "GAS2L2 WILD-TYPE" "GAS2L2 WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
  "GAS2L2 MUTATED" "GAS2L2 WILD-TYPE" "GAS2L2 WILD-TYPE"   "GAS2L2 MUTATED" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
  "GAS2L2 MUTATED" "GAS2L2 WILD-TYPE" "GAS2L2 WILD-TYPE"   "GAS2L2 MUTATED" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
  "GAS2L2 MUTATED" "GAS2L2 WILD-TYPE"   "GAS2L2 MUTATED" "GAS2L2 WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
"GAS2L2 WILD-TYPE"   "GAS2L2 MUTATED"   "GAS2L2 MUTATED" "GAS2L2 WILD-TYPE" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"GAS2L2 WILD-TYPE" "GAS2L2 WILD-TYPE" "GAS2L2 WILD-TYPE" "GAS2L2 WILD-TYPE" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
"GAS2L2 WILD-TYPE" "GAS2L2 WILD-TYPE"   "GAS2L2 MUTATED" "GAS2L2 WILD-TYPE" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
"GAS2L2 WILD-TYPE" "GAS2L2 WILD-TYPE" "GAS2L2 WILD-TYPE" "GAS2L2 WILD-TYPE" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
  "GAS2L2 MUTATED"   "GAS2L2 MUTATED" "GAS2L2 WILD-TYPE"   "GAS2L2 MUTATED" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
"GAS2L2 WILD-TYPE" "GAS2L2 WILD-TYPE"   "GAS2L2 MUTATED"   "GAS2L2 MUTATED" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
"GAS2L2 WILD-TYPE" "GAS2L2 WILD-TYPE" "GAS2L2 WILD-TYPE" "GAS2L2 WILD-TYPE" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
  "GAS2L2 MUTATED" "GAS2L2 WILD-TYPE" "GAS2L2 WILD-TYPE"   "GAS2L2 MUTATED" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
"GAS2L2 WILD-TYPE" "GAS2L2 WILD-TYPE"   "GAS2L2 MUTATED" "GAS2L2 WILD-TYPE" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"GAS2L2 WILD-TYPE" "GAS2L2 WILD-TYPE" "GAS2L2 WILD-TYPE" "GAS2L2 WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"GAS2L2 WILD-TYPE" "GAS2L2 WILD-TYPE"   "GAS2L2 MUTATED" "GAS2L2 WILD-TYPE" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
"GAS2L2 WILD-TYPE" "GAS2L2 WILD-TYPE" "GAS2L2 WILD-TYPE" "GAS2L2 WILD-TYPE" 
      TCGA-US-A77J 
"GAS2L2 WILD-TYPE" 
[1] "hr=" "2.3"
D27V2, continuous
                  vv
clus               STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  GAS2L2 MUTATED          0        0         5        14         1        0
  GAS2L2 WILD-TYPE        1        4         6        37         1        3
D27V3, multiclass
                  vv
clus               T1+T2 T3+T4
  GAS2L2 MUTATED       0    20
  GAS2L2 WILD-TYPE     6    46
D27V4, multiclass
       clus
vv      GAS2L2 MUTATED GAS2L2 WILD-TYPE
  T1+T2              0                6
  T3+T4             20               46
D27V5, binary
                  cls
clus                0  1
  GAS2L2 MUTATED    4 15
  GAS2L2 WILD-TYPE 13 39
[1] "tbl2"
                  cls
clus               [,1] [,2]
  GAS2L2 MUTATED      4   15
  GAS2L2 WILD-TYPE   13   39
   clus
vv  GAS2L2 MUTATED GAS2L2 WILD-TYPE
  0              4               13
  1             15               39
                  vv
clus               M0 M1 MX
  GAS2L2 MUTATED   12  0  8
  GAS2L2 WILD-TYPE 27  3 22
D27V6, multiclass
    clus
vv   GAS2L2 MUTATED GAS2L2 WILD-TYPE
  M0             12               27
  M1              0                3
  MX              8               22
D27V7, binary
                  cls
clus                0  1
  GAS2L2 MUTATED   11  9
  GAS2L2 WILD-TYPE 25 27
[1] "tbl2"
                  cls
clus               [,1] [,2]
  GAS2L2 MUTATED     11    9
  GAS2L2 WILD-TYPE   25   27
        clus
vv       GAS2L2 MUTATED GAS2L2 WILD-TYPE
  FEMALE             11               25
  MALE                9               27
                  vv
clus               PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  GAS2L2 MUTATED                                    16
  GAS2L2 WILD-TYPE                                  49
                  vv
clus               PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  GAS2L2 MUTATED                                       3
  GAS2L2 WILD-TYPE                                     1
                  vv
clus               PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  GAS2L2 MUTATED                                                  1
  GAS2L2 WILD-TYPE                                                1
D27V8, multiclass
                                                  clus
vv                                                 GAS2L2 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                          16
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                         3
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA              1
                                                  clus
vv                                                 GAS2L2 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                            49
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                           1
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                1
D27V9, continuous
D27V10, continuous
                  vv
clus               R0 R1 RX
  GAS2L2 MUTATED   11  6  1
  GAS2L2 WILD-TYPE 31 18  1
D27V11, multiclass
    clus
vv   GAS2L2 MUTATED GAS2L2 WILD-TYPE
  R0             11               31
  R1              6               18
  RX              1                1
D27V12, continuous

Clustering(28) Variable = XRCC2 MUTATION ANALYSIS
D28V1, survival
                 sevent
clus2              0  1
  XRCC2 MUTATED    4  0
  XRCC2 WILD-TYPE 36 29
  XRCC2 MUTATED XRCC2 WILD-TYPE 
              4              65 
  XRCC2 MUTATED XRCC2 WILD-TYPE 
              0              29 
$`XRCC2 MUTATED`
TCGA-H6-8124 TCGA-HZ-7926 TCGA-HZ-8003 TCGA-LB-A7SX 
       12.89         0.26         0.69         4.18 

$`XRCC2 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P5 TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR 
        0.13        11.93        12.66         2.47         0.03         5.46 
TCGA-FZ-5920 TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7289 
        2.01        36.20        20.81         7.66        13.02         7.89 
TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 
        0.92         0.66         0.13         0.26        12.13        11.87 
TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8636 
        0.62         0.79         3.95         0.92         0.53         0.16 
TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 
        2.99         0.76         0.95         6.38         1.51        11.41 
TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7651 TCGA-IB-7652 
       49.38         4.77        21.90        15.35        19.82        15.65 
TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 
       27.98         4.04         3.62        43.79        15.81        19.66 
TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO 
       16.04         3.85        15.98         0.56        17.16        10.82 
TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-OE-A75W 
        9.86         7.20        15.12         0.26         1.35         3.62 
TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
        8.12        13.68        16.80        14.14        18.67 

  XRCC2 MUTATED XRCC2 WILD-TYPE 
           0.26            0.03 
  XRCC2 MUTATED XRCC2 WILD-TYPE 
          12.89           49.38 
  XRCC2 MUTATED XRCC2 WILD-TYPE 
          2.435           7.890 
[1] "0.3 - 12.9 (2.4)" "0.0 - 49.4 (7.9)"
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE"   "XRCC2 MUTATED" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"XRCC2 WILD-TYPE"   "XRCC2 MUTATED" "XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
  "XRCC2 MUTATED" "XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE"   "XRCC2 MUTATED" "XRCC2 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" 
     TCGA-US-A77J 
"XRCC2 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE"   "XRCC2 MUTATED" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"XRCC2 WILD-TYPE"   "XRCC2 MUTATED" "XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
  "XRCC2 MUTATED" "XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE"   "XRCC2 MUTATED" "XRCC2 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" 
     TCGA-US-A77J 
"XRCC2 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE"   "XRCC2 MUTATED" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"XRCC2 WILD-TYPE"   "XRCC2 MUTATED" "XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
  "XRCC2 MUTATED" "XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE"   "XRCC2 MUTATED" "XRCC2 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" 
     TCGA-US-A77J 
"XRCC2 WILD-TYPE" 
[1] "hr="     "2.6e+07"
D28V2, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  XRCC2 MUTATED          0        0         0         4         0        0
  XRCC2 WILD-TYPE        1        4        11        47         2        3
D28V3, multiclass
                 vv
clus              T1+T2 T3+T4
  XRCC2 MUTATED       0     4
  XRCC2 WILD-TYPE     6    62
D28V4, multiclass
       clus
vv      XRCC2 MUTATED XRCC2 WILD-TYPE
  T1+T2             0               6
  T3+T4             4              62
D28V5, binary
                 cls
clus               0  1
  XRCC2 MUTATED    0  4
  XRCC2 WILD-TYPE 17 50
[1] "tbl2"
                 cls
clus              [,1] [,2]
  XRCC2 MUTATED      0    4
  XRCC2 WILD-TYPE   17   50
   clus
vv  XRCC2 MUTATED XRCC2 WILD-TYPE
  0             0              17
  1             4              50
                 vv
clus              M0 M1 MX
  XRCC2 MUTATED    1  0  3
  XRCC2 WILD-TYPE 38  3 27
D28V6, multiclass
    clus
vv   XRCC2 MUTATED XRCC2 WILD-TYPE
  M0             1              38
  M1             0               3
  MX             3              27
D28V7, binary
                 cls
clus               0  1
  XRCC2 MUTATED    3  1
  XRCC2 WILD-TYPE 33 35
[1] "tbl2"
                 cls
clus              [,1] [,2]
  XRCC2 MUTATED      3    1
  XRCC2 WILD-TYPE   33   35
        clus
vv       XRCC2 MUTATED XRCC2 WILD-TYPE
  FEMALE             3              33
  MALE               1              35
                 vv
clus              PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  XRCC2 MUTATED                                     4
  XRCC2 WILD-TYPE                                  61
                 vv
clus              PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  XRCC2 MUTATED                                       0
  XRCC2 WILD-TYPE                                     4
                 vv
clus              PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  XRCC2 MUTATED                                                  0
  XRCC2 WILD-TYPE                                                2
D28V8, multiclass
                                                  clus
vv                                                 XRCC2 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                          4
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                        0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA             0
                                                  clus
vv                                                 XRCC2 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                           61
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                          4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA               2
D28V9, continuous
[1] "Remove cluster labels:" "XRCC2 MUTATED"         
clus
  XRCC2 MUTATED XRCC2 WILD-TYPE 
              2              20 
     TCGA-F2-6880      TCGA-FB-A4P5      TCGA-FB-A4P6      TCGA-FB-A5VM 
"XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" 
     TCGA-FB-A78T      TCGA-FB-A7DR      TCGA-H6-A45N      TCGA-H8-A6C1 
"XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" 
     TCGA-IB-7644      TCGA-IB-7649      TCGA-IB-7651      TCGA-IB-7885 
"XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" 
     TCGA-IB-7886      TCGA-IB-7887      TCGA-IB-7891      TCGA-IB-8126 
"XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" 
     TCGA-IB-8127      TCGA-IB-A5SS      TCGA-IB-A6UG      TCGA-OE-A75W 
"XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" 
D28V10, continuous
[1] "Remove cluster labels:" "XRCC2 MUTATED"         
clus
  XRCC2 MUTATED XRCC2 WILD-TYPE 
              2              17 
     TCGA-FB-A4P5      TCGA-FB-A4P6      TCGA-FB-A5VM      TCGA-FB-A78T 
"XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" 
     TCGA-FB-A7DR      TCGA-H8-A6C1      TCGA-IB-7644      TCGA-IB-7649 
"XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" 
     TCGA-IB-7651      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7891 
"XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" 
     TCGA-IB-8126      TCGA-IB-8127      TCGA-IB-A5SS      TCGA-IB-A6UG 
"XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" "XRCC2 WILD-TYPE" 
     TCGA-OE-A75W 
"XRCC2 WILD-TYPE" 
                 vv
clus              R0 R1 RX
  XRCC2 MUTATED    2  1  1
  XRCC2 WILD-TYPE 40 23  1
D28V11, multiclass
    clus
vv   XRCC2 MUTATED XRCC2 WILD-TYPE
  R0             2              40
  R1             1              23
  RX             1               1
D28V12, continuous

Clustering(29) Variable = ZBTB33 MUTATION ANALYSIS
D29V1, survival
                  sevent
clus2               0  1
  ZBTB33 MUTATED    3  0
  ZBTB33 WILD-TYPE 37 29
  ZBTB33 MUTATED ZBTB33 WILD-TYPE 
               3               66 
  ZBTB33 MUTATED ZBTB33 WILD-TYPE 
               0               29 
$`ZBTB33 MUTATED`
TCGA-H6-8124 TCGA-HZ-7919 TCGA-HZ-8638 
       12.89         0.66         2.99 

$`ZBTB33 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P5 TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR 
        0.13        11.93        12.66         2.47         0.03         5.46 
TCGA-FZ-5920 TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7289 
        2.01        36.20        20.81         7.66        13.02         7.89 
TCGA-HZ-7918 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 
        0.92         0.13         0.26        12.13        11.87         0.26 
TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 
        0.62         0.79         0.69         3.95         0.92         0.53 
TCGA-HZ-8636 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 
        0.16         0.76         0.95         6.38         1.51        11.41 
TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7651 TCGA-IB-7652 
       49.38         4.77        21.90        15.35        19.82        15.65 
TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 
       27.98         4.04         3.62        43.79        15.81        19.66 
TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO 
       16.04         3.85        15.98         0.56        17.16        10.82 
TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX 
        9.86         7.20        15.12         0.26         1.35         4.18 
TCGA-OE-A75W TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
        3.62         8.12        13.68        16.80        14.14        18.67 

  ZBTB33 MUTATED ZBTB33 WILD-TYPE 
            0.66             0.03 
  ZBTB33 MUTATED ZBTB33 WILD-TYPE 
           12.89            49.38 
  ZBTB33 MUTATED ZBTB33 WILD-TYPE 
           2.990            7.775 
[1] "0.7 - 12.9 (3.0)" "0.0 - 49.4 (7.8)"
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
"ZBTB33 WILD-TYPE" "ZBTB33 WILD-TYPE" "ZBTB33 WILD-TYPE" "ZBTB33 WILD-TYPE" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"ZBTB33 WILD-TYPE" "ZBTB33 WILD-TYPE" "ZBTB33 WILD-TYPE" "ZBTB33 WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
"ZBTB33 WILD-TYPE" "ZBTB33 WILD-TYPE" "ZBTB33 WILD-TYPE" "ZBTB33 WILD-TYPE" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"ZBTB33 WILD-TYPE" "ZBTB33 WILD-TYPE" "ZBTB33 WILD-TYPE"   "ZBTB33 MUTATED" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
"ZBTB33 WILD-TYPE" "ZBTB33 WILD-TYPE" "ZBTB33 WILD-TYPE" "ZBTB33 WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
  "ZBTB33 MUTATED" "ZBTB33 WILD-TYPE" "ZBTB33 WILD-TYPE" "ZBTB33 WILD-TYPE" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"ZBTB33 WILD-TYPE" "ZBTB33 WILD-TYPE" "ZBTB33 WILD-TYPE" "ZBTB33 WILD-TYPE" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
"ZBTB33 WILD-TYPE" "ZBTB33 WILD-TYPE" "ZBTB33 WILD-TYPE" "ZBTB33 WILD-TYPE" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
"ZBTB33 WILD-TYPE"   "ZBTB33 MUTATED" "ZBTB33 WILD-TYPE" "ZBTB33 WILD-TYPE" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
"ZBTB33 WILD-TYPE" "ZBTB33 WILD-TYPE" "ZBTB33 WILD-TYPE" "ZBTB33 WILD-TYPE" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
"ZBTB33 WILD-TYPE" "ZBTB33 WILD-TYPE" "ZBTB33 WILD-TYPE" "ZBTB33 WILD-TYPE" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
"ZBTB33 WILD-TYPE" "ZBTB33 WILD-TYPE" "ZBTB33 WILD-TYPE" "ZBTB33 WILD-TYPE" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
"ZBTB33 WILD-TYPE" "ZBTB33 WILD-TYPE" "ZBTB33 WILD-TYPE" "ZBTB33 WILD-TYPE" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
"ZBTB33 WILD-TYPE" "ZBTB33 WILD-TYPE" "ZBTB33 WILD-TYPE" "ZBTB33 WILD-TYPE" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"ZBTB33 WILD-TYPE" "ZBTB33 WILD-TYPE" "ZBTB33 WILD-TYPE" "ZBTB33 WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"ZBTB33 WILD-TYPE" "ZBTB33 WILD-TYPE" "ZBTB33 WILD-TYPE" "ZBTB33 WILD-TYPE" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
"ZBTB33 WILD-TYPE" "ZBTB33 WILD-TYPE" "ZBTB33 WILD-TYPE" "ZBTB33 WILD-TYPE" 
      TCGA-US-A77J 
"ZBTB33 WILD-TYPE" 
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
"ZBTB33 WILD-TYPE" "ZBTB33 WILD-TYPE" "ZBTB33 WILD-TYPE" "ZBTB33 WILD-TYPE" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"ZBTB33 WILD-TYPE" "ZBTB33 WILD-TYPE" "ZBTB33 WILD-TYPE" "ZBTB33 WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
"ZBTB33 WILD-TYPE" "ZBTB33 WILD-TYPE" "ZBTB33 WILD-TYPE" "ZBTB33 WILD-TYPE" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"ZBTB33 WILD-TYPE" "ZBTB33 WILD-TYPE" "ZBTB33 WILD-TYPE"   "ZBTB33 MUTATED" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
"ZBTB33 WILD-TYPE" "ZBTB33 WILD-TYPE" "ZBTB33 WILD-TYPE" "ZBTB33 WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
  "ZBTB33 MUTATED" "ZBTB33 WILD-TYPE" "ZBTB33 WILD-TYPE" "ZBTB33 WILD-TYPE" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"ZBTB33 WILD-TYPE" "ZBTB33 WILD-TYPE" "ZBTB33 WILD-TYPE" "ZBTB33 WILD-TYPE" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
"ZBTB33 WILD-TYPE" "ZBTB33 WILD-TYPE" "ZBTB33 WILD-TYPE" "ZBTB33 WILD-TYPE" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
"ZBTB33 WILD-TYPE"   "ZBTB33 MUTATED" "ZBTB33 WILD-TYPE" "ZBTB33 WILD-TYPE" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
"ZBTB33 WILD-TYPE" "ZBTB33 WILD-TYPE" "ZBTB33 WILD-TYPE" "ZBTB33 WILD-TYPE" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
"ZBTB33 WILD-TYPE" "ZBTB33 WILD-TYPE" "ZBTB33 WILD-TYPE" "ZBTB33 WILD-TYPE" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
"ZBTB33 WILD-TYPE" "ZBTB33 WILD-TYPE" "ZBTB33 WILD-TYPE" "ZBTB33 WILD-TYPE" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
"ZBTB33 WILD-TYPE" "ZBTB33 WILD-TYPE" "ZBTB33 WILD-TYPE" "ZBTB33 WILD-TYPE" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
"ZBTB33 WILD-TYPE" "ZBTB33 WILD-TYPE" "ZBTB33 WILD-TYPE" "ZBTB33 WILD-TYPE" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"ZBTB33 WILD-TYPE" "ZBTB33 WILD-TYPE" "ZBTB33 WILD-TYPE" "ZBTB33 WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"ZBTB33 WILD-TYPE" "ZBTB33 WILD-TYPE" "ZBTB33 WILD-TYPE" "ZBTB33 WILD-TYPE" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
"ZBTB33 WILD-TYPE" "ZBTB33 WILD-TYPE" "ZBTB33 WILD-TYPE" "ZBTB33 WILD-TYPE" 
      TCGA-US-A77J 
"ZBTB33 WILD-TYPE" 
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
"ZBTB33 WILD-TYPE" "ZBTB33 WILD-TYPE" "ZBTB33 WILD-TYPE" "ZBTB33 WILD-TYPE" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"ZBTB33 WILD-TYPE" "ZBTB33 WILD-TYPE" "ZBTB33 WILD-TYPE" "ZBTB33 WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
"ZBTB33 WILD-TYPE" "ZBTB33 WILD-TYPE" "ZBTB33 WILD-TYPE" "ZBTB33 WILD-TYPE" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"ZBTB33 WILD-TYPE" "ZBTB33 WILD-TYPE" "ZBTB33 WILD-TYPE"   "ZBTB33 MUTATED" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
"ZBTB33 WILD-TYPE" "ZBTB33 WILD-TYPE" "ZBTB33 WILD-TYPE" "ZBTB33 WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
  "ZBTB33 MUTATED" "ZBTB33 WILD-TYPE" "ZBTB33 WILD-TYPE" "ZBTB33 WILD-TYPE" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"ZBTB33 WILD-TYPE" "ZBTB33 WILD-TYPE" "ZBTB33 WILD-TYPE" "ZBTB33 WILD-TYPE" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
"ZBTB33 WILD-TYPE" "ZBTB33 WILD-TYPE" "ZBTB33 WILD-TYPE" "ZBTB33 WILD-TYPE" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
"ZBTB33 WILD-TYPE"   "ZBTB33 MUTATED" "ZBTB33 WILD-TYPE" "ZBTB33 WILD-TYPE" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
"ZBTB33 WILD-TYPE" "ZBTB33 WILD-TYPE" "ZBTB33 WILD-TYPE" "ZBTB33 WILD-TYPE" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
"ZBTB33 WILD-TYPE" "ZBTB33 WILD-TYPE" "ZBTB33 WILD-TYPE" "ZBTB33 WILD-TYPE" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
"ZBTB33 WILD-TYPE" "ZBTB33 WILD-TYPE" "ZBTB33 WILD-TYPE" "ZBTB33 WILD-TYPE" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
"ZBTB33 WILD-TYPE" "ZBTB33 WILD-TYPE" "ZBTB33 WILD-TYPE" "ZBTB33 WILD-TYPE" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
"ZBTB33 WILD-TYPE" "ZBTB33 WILD-TYPE" "ZBTB33 WILD-TYPE" "ZBTB33 WILD-TYPE" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"ZBTB33 WILD-TYPE" "ZBTB33 WILD-TYPE" "ZBTB33 WILD-TYPE" "ZBTB33 WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"ZBTB33 WILD-TYPE" "ZBTB33 WILD-TYPE" "ZBTB33 WILD-TYPE" "ZBTB33 WILD-TYPE" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
"ZBTB33 WILD-TYPE" "ZBTB33 WILD-TYPE" "ZBTB33 WILD-TYPE" "ZBTB33 WILD-TYPE" 
      TCGA-US-A77J 
"ZBTB33 WILD-TYPE" 
[1] "hr="     "2.5e+07"
D29V2, continuous
                  vv
clus               STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  ZBTB33 MUTATED          1        0         0         2         0        0
  ZBTB33 WILD-TYPE        0        4        11        49         2        3
D29V3, multiclass
                  vv
clus               T1+T2 T3+T4
  ZBTB33 MUTATED       1     2
  ZBTB33 WILD-TYPE     5    64
D29V4, multiclass
       clus
vv      ZBTB33 MUTATED ZBTB33 WILD-TYPE
  T1+T2              1                5
  T3+T4              2               64
D29V5, binary
                  cls
clus                0  1
  ZBTB33 MUTATED    1  2
  ZBTB33 WILD-TYPE 16 52
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ZBTB33 MUTATED      1    2
  ZBTB33 WILD-TYPE   16   52
   clus
vv  ZBTB33 MUTATED ZBTB33 WILD-TYPE
  0              1               16
  1              2               52
                  vv
clus               M0 M1 MX
  ZBTB33 MUTATED    2  0  1
  ZBTB33 WILD-TYPE 37  3 29
D29V6, multiclass
    clus
vv   ZBTB33 MUTATED ZBTB33 WILD-TYPE
  M0              2               37
  M1              0                3
  MX              1               29
D29V7, binary
                  cls
clus                0  1
  ZBTB33 MUTATED    3  0
  ZBTB33 WILD-TYPE 33 36
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ZBTB33 MUTATED      3    0
  ZBTB33 WILD-TYPE   33   36
        clus
vv       ZBTB33 MUTATED ZBTB33 WILD-TYPE
  FEMALE              3               33
  MALE                0               36
                  vv
clus               PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  ZBTB33 MUTATED                                     2
  ZBTB33 WILD-TYPE                                  63
                  vv
clus               PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  ZBTB33 MUTATED                                       0
  ZBTB33 WILD-TYPE                                     4
                  vv
clus               PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  ZBTB33 MUTATED                                                  1
  ZBTB33 WILD-TYPE                                                1
D29V8, multiclass
                                                  clus
vv                                                 ZBTB33 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                           2
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                         0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA              1
                                                  clus
vv                                                 ZBTB33 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                            63
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                           4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                1
D29V9, continuous
[1] "Remove cluster labels:" "ZBTB33 MUTATED"        
clus
  ZBTB33 MUTATED ZBTB33 WILD-TYPE 
               1               21 
      TCGA-F2-6880       TCGA-FB-A4P5       TCGA-FB-A4P6       TCGA-FB-A5VM 
"ZBTB33 WILD-TYPE" "ZBTB33 WILD-TYPE" "ZBTB33 WILD-TYPE" "ZBTB33 WILD-TYPE" 
      TCGA-FB-A78T       TCGA-FB-A7DR       TCGA-H6-A45N       TCGA-H8-A6C1 
"ZBTB33 WILD-TYPE" "ZBTB33 WILD-TYPE" "ZBTB33 WILD-TYPE" "ZBTB33 WILD-TYPE" 
      TCGA-IB-7644       TCGA-IB-7649       TCGA-IB-7651       TCGA-IB-7885 
"ZBTB33 WILD-TYPE" "ZBTB33 WILD-TYPE" "ZBTB33 WILD-TYPE" "ZBTB33 WILD-TYPE" 
      TCGA-IB-7886       TCGA-IB-7887       TCGA-IB-7891       TCGA-IB-8126 
"ZBTB33 WILD-TYPE" "ZBTB33 WILD-TYPE" "ZBTB33 WILD-TYPE" "ZBTB33 WILD-TYPE" 
      TCGA-IB-8127       TCGA-IB-A5SS       TCGA-IB-A6UG       TCGA-LB-A7SX 
"ZBTB33 WILD-TYPE" "ZBTB33 WILD-TYPE" "ZBTB33 WILD-TYPE" "ZBTB33 WILD-TYPE" 
      TCGA-OE-A75W 
"ZBTB33 WILD-TYPE" 
D29V10, continuous
[1] "Remove cluster labels:" "ZBTB33 MUTATED"        
clus
  ZBTB33 MUTATED ZBTB33 WILD-TYPE 
               1               18 
      TCGA-FB-A4P5       TCGA-FB-A4P6       TCGA-FB-A5VM       TCGA-FB-A78T 
"ZBTB33 WILD-TYPE" "ZBTB33 WILD-TYPE" "ZBTB33 WILD-TYPE" "ZBTB33 WILD-TYPE" 
      TCGA-FB-A7DR       TCGA-H8-A6C1       TCGA-IB-7644       TCGA-IB-7649 
"ZBTB33 WILD-TYPE" "ZBTB33 WILD-TYPE" "ZBTB33 WILD-TYPE" "ZBTB33 WILD-TYPE" 
      TCGA-IB-7651       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7891 
"ZBTB33 WILD-TYPE" "ZBTB33 WILD-TYPE" "ZBTB33 WILD-TYPE" "ZBTB33 WILD-TYPE" 
      TCGA-IB-8126       TCGA-IB-8127       TCGA-IB-A5SS       TCGA-IB-A6UG 
"ZBTB33 WILD-TYPE" "ZBTB33 WILD-TYPE" "ZBTB33 WILD-TYPE" "ZBTB33 WILD-TYPE" 
      TCGA-LB-A7SX       TCGA-OE-A75W 
"ZBTB33 WILD-TYPE" "ZBTB33 WILD-TYPE" 
                  vv
clus               R0 R1 RX
  ZBTB33 MUTATED    2  1  0
  ZBTB33 WILD-TYPE 40 23  2
D29V11, multiclass
    clus
vv   ZBTB33 MUTATED ZBTB33 WILD-TYPE
  R0              2               40
  R1              1               23
  RX              0                2
D29V12, continuous

Clustering(30) Variable = PTPRF MUTATION ANALYSIS
D30V1, survival
                 sevent
clus2              0  1
  PTPRF MUTATED   10  5
  PTPRF WILD-TYPE 30 24
  PTPRF MUTATED PTPRF WILD-TYPE 
             15              54 
  PTPRF MUTATED PTPRF WILD-TYPE 
              5              24 
$`PTPRF MUTATED`
TCGA-F2-6880 TCGA-F2-7276 TCGA-HZ-7919 TCGA-HZ-7926 TCGA-HZ-8002 TCGA-HZ-8003 
        9.70         7.10         0.66         0.26         0.79         0.69 
TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-IB-7651 TCGA-IB-7897 TCGA-IB-8126 
        2.99         0.76         0.95        19.82        15.98         0.56 
TCGA-IB-A5SS TCGA-IB-A6UG TCGA-LB-A7SX 
       15.12         1.35         4.18 

$`PTPRF WILD-TYPE`
TCGA-F2-6879 TCGA-F2-7273 TCGA-F2-A44G TCGA-F2-A44H TCGA-FB-A4P5 TCGA-FB-A4P6 
       10.98        11.84         5.03        19.27         0.13        11.93 
TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR TCGA-FZ-5920 TCGA-FZ-5922 
       12.66         2.47         0.03         5.46         2.01        36.20 
TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7289 TCGA-HZ-7918 
       20.81        12.89         7.66        13.02         7.89         0.92 
TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-8001 TCGA-HZ-8005 
        0.13         0.26        12.13        11.87         0.62         3.95 
TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8636 TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 
        0.92         0.53         0.16         6.38         1.51        11.41 
TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7652 TCGA-IB-7885 
       49.38         4.77        21.90        15.35        15.65        27.98 
TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 
        4.04         3.62        43.79        15.81        19.66        16.04 
TCGA-IB-7893 TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5ST 
        3.85        17.16        10.82         9.86         7.20         0.26 
TCGA-OE-A75W TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
        3.62         8.12        13.68        16.80        14.14        18.67 

  PTPRF MUTATED PTPRF WILD-TYPE 
           0.26            0.03 
  PTPRF MUTATED PTPRF WILD-TYPE 
          19.82           49.38 
  PTPRF MUTATED PTPRF WILD-TYPE 
           1.35           10.34 
[1] "0.3 - 19.8 (1.4)"  "0.0 - 49.4 (10.3)"
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"PTPRF WILD-TYPE"   "PTPRF MUTATED" "PTPRF WILD-TYPE"   "PTPRF MUTATED" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"PTPRF WILD-TYPE" "PTPRF WILD-TYPE" "PTPRF WILD-TYPE" "PTPRF WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"PTPRF WILD-TYPE" "PTPRF WILD-TYPE" "PTPRF WILD-TYPE" "PTPRF WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"PTPRF WILD-TYPE" "PTPRF WILD-TYPE" "PTPRF WILD-TYPE" "PTPRF WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"PTPRF WILD-TYPE" "PTPRF WILD-TYPE" "PTPRF WILD-TYPE" "PTPRF WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
  "PTPRF MUTATED" "PTPRF WILD-TYPE" "PTPRF WILD-TYPE" "PTPRF WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"PTPRF WILD-TYPE"   "PTPRF MUTATED" "PTPRF WILD-TYPE"   "PTPRF MUTATED" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
  "PTPRF MUTATED" "PTPRF WILD-TYPE" "PTPRF WILD-TYPE" "PTPRF WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"PTPRF WILD-TYPE"   "PTPRF MUTATED"   "PTPRF MUTATED"   "PTPRF MUTATED" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"PTPRF WILD-TYPE" "PTPRF WILD-TYPE" "PTPRF WILD-TYPE" "PTPRF WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"PTPRF WILD-TYPE" "PTPRF WILD-TYPE" "PTPRF WILD-TYPE"   "PTPRF MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"PTPRF WILD-TYPE" "PTPRF WILD-TYPE" "PTPRF WILD-TYPE" "PTPRF WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"PTPRF WILD-TYPE" "PTPRF WILD-TYPE" "PTPRF WILD-TYPE" "PTPRF WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"PTPRF WILD-TYPE"   "PTPRF MUTATED"   "PTPRF MUTATED" "PTPRF WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"PTPRF WILD-TYPE" "PTPRF WILD-TYPE" "PTPRF WILD-TYPE"   "PTPRF MUTATED" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"PTPRF WILD-TYPE"   "PTPRF MUTATED"   "PTPRF MUTATED" "PTPRF WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"PTPRF WILD-TYPE" "PTPRF WILD-TYPE" "PTPRF WILD-TYPE" "PTPRF WILD-TYPE" 
     TCGA-US-A77J 
"PTPRF WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"PTPRF WILD-TYPE"   "PTPRF MUTATED" "PTPRF WILD-TYPE"   "PTPRF MUTATED" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"PTPRF WILD-TYPE" "PTPRF WILD-TYPE" "PTPRF WILD-TYPE" "PTPRF WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"PTPRF WILD-TYPE" "PTPRF WILD-TYPE" "PTPRF WILD-TYPE" "PTPRF WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"PTPRF WILD-TYPE" "PTPRF WILD-TYPE" "PTPRF WILD-TYPE" "PTPRF WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"PTPRF WILD-TYPE" "PTPRF WILD-TYPE" "PTPRF WILD-TYPE" "PTPRF WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
  "PTPRF MUTATED" "PTPRF WILD-TYPE" "PTPRF WILD-TYPE" "PTPRF WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"PTPRF WILD-TYPE"   "PTPRF MUTATED" "PTPRF WILD-TYPE"   "PTPRF MUTATED" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
  "PTPRF MUTATED" "PTPRF WILD-TYPE" "PTPRF WILD-TYPE" "PTPRF WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"PTPRF WILD-TYPE"   "PTPRF MUTATED"   "PTPRF MUTATED"   "PTPRF MUTATED" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"PTPRF WILD-TYPE" "PTPRF WILD-TYPE" "PTPRF WILD-TYPE" "PTPRF WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"PTPRF WILD-TYPE" "PTPRF WILD-TYPE" "PTPRF WILD-TYPE"   "PTPRF MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"PTPRF WILD-TYPE" "PTPRF WILD-TYPE" "PTPRF WILD-TYPE" "PTPRF WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"PTPRF WILD-TYPE" "PTPRF WILD-TYPE" "PTPRF WILD-TYPE" "PTPRF WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"PTPRF WILD-TYPE"   "PTPRF MUTATED"   "PTPRF MUTATED" "PTPRF WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"PTPRF WILD-TYPE" "PTPRF WILD-TYPE" "PTPRF WILD-TYPE"   "PTPRF MUTATED" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"PTPRF WILD-TYPE"   "PTPRF MUTATED"   "PTPRF MUTATED" "PTPRF WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"PTPRF WILD-TYPE" "PTPRF WILD-TYPE" "PTPRF WILD-TYPE" "PTPRF WILD-TYPE" 
     TCGA-US-A77J 
"PTPRF WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"PTPRF WILD-TYPE"   "PTPRF MUTATED" "PTPRF WILD-TYPE"   "PTPRF MUTATED" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"PTPRF WILD-TYPE" "PTPRF WILD-TYPE" "PTPRF WILD-TYPE" "PTPRF WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"PTPRF WILD-TYPE" "PTPRF WILD-TYPE" "PTPRF WILD-TYPE" "PTPRF WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"PTPRF WILD-TYPE" "PTPRF WILD-TYPE" "PTPRF WILD-TYPE" "PTPRF WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"PTPRF WILD-TYPE" "PTPRF WILD-TYPE" "PTPRF WILD-TYPE" "PTPRF WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
  "PTPRF MUTATED" "PTPRF WILD-TYPE" "PTPRF WILD-TYPE" "PTPRF WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"PTPRF WILD-TYPE"   "PTPRF MUTATED" "PTPRF WILD-TYPE"   "PTPRF MUTATED" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
  "PTPRF MUTATED" "PTPRF WILD-TYPE" "PTPRF WILD-TYPE" "PTPRF WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"PTPRF WILD-TYPE"   "PTPRF MUTATED"   "PTPRF MUTATED"   "PTPRF MUTATED" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"PTPRF WILD-TYPE" "PTPRF WILD-TYPE" "PTPRF WILD-TYPE" "PTPRF WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"PTPRF WILD-TYPE" "PTPRF WILD-TYPE" "PTPRF WILD-TYPE"   "PTPRF MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"PTPRF WILD-TYPE" "PTPRF WILD-TYPE" "PTPRF WILD-TYPE" "PTPRF WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"PTPRF WILD-TYPE" "PTPRF WILD-TYPE" "PTPRF WILD-TYPE" "PTPRF WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"PTPRF WILD-TYPE"   "PTPRF MUTATED"   "PTPRF MUTATED" "PTPRF WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"PTPRF WILD-TYPE" "PTPRF WILD-TYPE" "PTPRF WILD-TYPE"   "PTPRF MUTATED" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"PTPRF WILD-TYPE"   "PTPRF MUTATED"   "PTPRF MUTATED" "PTPRF WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"PTPRF WILD-TYPE" "PTPRF WILD-TYPE" "PTPRF WILD-TYPE" "PTPRF WILD-TYPE" 
     TCGA-US-A77J 
"PTPRF WILD-TYPE" 
[1] "hr=" "1.7"
D30V2, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  PTPRF MUTATED          1        0         0        14         1        0
  PTPRF WILD-TYPE        0        4        11        37         1        3
D30V3, multiclass
                 vv
clus              T1+T2 T3+T4
  PTPRF MUTATED       2    14
  PTPRF WILD-TYPE     4    52
D30V4, multiclass
       clus
vv      PTPRF MUTATED PTPRF WILD-TYPE
  T1+T2             2               4
  T3+T4            14              52
D30V5, binary
                 cls
clus               0  1
  PTPRF MUTATED    1 15
  PTPRF WILD-TYPE 16 39
[1] "tbl2"
                 cls
clus              [,1] [,2]
  PTPRF MUTATED      1   15
  PTPRF WILD-TYPE   16   39
   clus
vv  PTPRF MUTATED PTPRF WILD-TYPE
  0             1              16
  1            15              39
                 vv
clus              M0 M1 MX
  PTPRF MUTATED    8  0  8
  PTPRF WILD-TYPE 31  3 22
D30V6, multiclass
    clus
vv   PTPRF MUTATED PTPRF WILD-TYPE
  M0             8              31
  M1             0               3
  MX             8              22
D30V7, binary
                 cls
clus               0  1
  PTPRF MUTATED   11  5
  PTPRF WILD-TYPE 25 31
[1] "tbl2"
                 cls
clus              [,1] [,2]
  PTPRF MUTATED     11    5
  PTPRF WILD-TYPE   25   31
        clus
vv       PTPRF MUTATED PTPRF WILD-TYPE
  FEMALE            11              25
  MALE               5              31
                 vv
clus              PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  PTPRF MUTATED                                    15
  PTPRF WILD-TYPE                                  50
                 vv
clus              PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  PTPRF MUTATED                                       0
  PTPRF WILD-TYPE                                     4
                 vv
clus              PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  PTPRF MUTATED                                                  1
  PTPRF WILD-TYPE                                                1
D30V8, multiclass
                                                  clus
vv                                                 PTPRF MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                         15
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                        0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA             1
                                                  clus
vv                                                 PTPRF WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                           50
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                          4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA               1
D30V9, continuous
D30V10, continuous
                 vv
clus              R0 R1 RX
  PTPRF MUTATED   10  5  1
  PTPRF WILD-TYPE 32 19  1
D30V11, multiclass
    clus
vv   PTPRF MUTATED PTPRF WILD-TYPE
  R0            10              32
  R1             5              19
  RX             1               1
D30V12, continuous

Clustering(31) Variable = UBXN6 MUTATION ANALYSIS
D31V1, survival
                 sevent
clus2              0  1
  UBXN6 MUTATED    3  5
  UBXN6 WILD-TYPE 37 24
  UBXN6 MUTATED UBXN6 WILD-TYPE 
              8              61 
  UBXN6 MUTATED UBXN6 WILD-TYPE 
              5              24 
$`UBXN6 MUTATED`
TCGA-F2-7276 TCGA-F2-A44G TCGA-H6-A45N TCGA-HZ-8003 TCGA-HZ-A49G TCGA-HZ-A49H 
        7.10         5.03         7.66         0.69         0.76         0.95 
TCGA-IB-7646 TCGA-IB-7651 
        4.77        19.82 

$`UBXN6 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-A44H TCGA-FB-A4P5 TCGA-FB-A4P6 
       10.98         9.70        11.84        19.27         0.13        11.93 
TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR TCGA-FZ-5920 TCGA-FZ-5922 
       12.66         2.47         0.03         5.46         2.01        36.20 
TCGA-FZ-5923 TCGA-H6-8124 TCGA-H8-A6C1 TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-7919 
       20.81        12.89        13.02         7.89         0.92         0.66 
TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8001 
        0.13         0.26        12.13        11.87         0.26         0.62 
TCGA-HZ-8002 TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8636 TCGA-HZ-8638 
        0.79         3.95         0.92         0.53         0.16         2.99 
TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7647 TCGA-IB-7649 
        6.38         1.51        11.41        49.38        21.90        15.35 
TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 
       15.65        27.98         4.04         3.62        43.79        15.81 
TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-8127 
       19.66        16.04         3.85        15.98         0.56        17.16 
TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG 
       10.82         9.86         7.20        15.12         0.26         1.35 
TCGA-LB-A7SX TCGA-OE-A75W TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E 
        4.18         3.62         8.12        13.68        16.80        14.14 
TCGA-US-A77J 
       18.67 

  UBXN6 MUTATED UBXN6 WILD-TYPE 
           0.69            0.03 
  UBXN6 MUTATED UBXN6 WILD-TYPE 
          19.82           49.38 
  UBXN6 MUTATED UBXN6 WILD-TYPE 
            4.9             9.7 
[1] "0.7 - 19.8 (4.9)" "0.0 - 49.4 (9.7)"
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"UBXN6 WILD-TYPE" "UBXN6 WILD-TYPE" "UBXN6 WILD-TYPE"   "UBXN6 MUTATED" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
  "UBXN6 MUTATED" "UBXN6 WILD-TYPE" "UBXN6 WILD-TYPE" "UBXN6 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"UBXN6 WILD-TYPE" "UBXN6 WILD-TYPE" "UBXN6 WILD-TYPE" "UBXN6 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"UBXN6 WILD-TYPE" "UBXN6 WILD-TYPE" "UBXN6 WILD-TYPE" "UBXN6 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
  "UBXN6 MUTATED" "UBXN6 WILD-TYPE" "UBXN6 WILD-TYPE" "UBXN6 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"UBXN6 WILD-TYPE" "UBXN6 WILD-TYPE" "UBXN6 WILD-TYPE" "UBXN6 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"UBXN6 WILD-TYPE" "UBXN6 WILD-TYPE" "UBXN6 WILD-TYPE" "UBXN6 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
  "UBXN6 MUTATED" "UBXN6 WILD-TYPE" "UBXN6 WILD-TYPE" "UBXN6 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"UBXN6 WILD-TYPE" "UBXN6 WILD-TYPE"   "UBXN6 MUTATED"   "UBXN6 MUTATED" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"UBXN6 WILD-TYPE" "UBXN6 WILD-TYPE" "UBXN6 WILD-TYPE" "UBXN6 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
  "UBXN6 MUTATED" "UBXN6 WILD-TYPE" "UBXN6 WILD-TYPE"   "UBXN6 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"UBXN6 WILD-TYPE" "UBXN6 WILD-TYPE" "UBXN6 WILD-TYPE" "UBXN6 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"UBXN6 WILD-TYPE" "UBXN6 WILD-TYPE" "UBXN6 WILD-TYPE" "UBXN6 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"UBXN6 WILD-TYPE" "UBXN6 WILD-TYPE" "UBXN6 WILD-TYPE" "UBXN6 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"UBXN6 WILD-TYPE" "UBXN6 WILD-TYPE" "UBXN6 WILD-TYPE" "UBXN6 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"UBXN6 WILD-TYPE" "UBXN6 WILD-TYPE" "UBXN6 WILD-TYPE" "UBXN6 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"UBXN6 WILD-TYPE" "UBXN6 WILD-TYPE" "UBXN6 WILD-TYPE" "UBXN6 WILD-TYPE" 
     TCGA-US-A77J 
"UBXN6 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"UBXN6 WILD-TYPE" "UBXN6 WILD-TYPE" "UBXN6 WILD-TYPE"   "UBXN6 MUTATED" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
  "UBXN6 MUTATED" "UBXN6 WILD-TYPE" "UBXN6 WILD-TYPE" "UBXN6 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"UBXN6 WILD-TYPE" "UBXN6 WILD-TYPE" "UBXN6 WILD-TYPE" "UBXN6 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"UBXN6 WILD-TYPE" "UBXN6 WILD-TYPE" "UBXN6 WILD-TYPE" "UBXN6 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
  "UBXN6 MUTATED" "UBXN6 WILD-TYPE" "UBXN6 WILD-TYPE" "UBXN6 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"UBXN6 WILD-TYPE" "UBXN6 WILD-TYPE" "UBXN6 WILD-TYPE" "UBXN6 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"UBXN6 WILD-TYPE" "UBXN6 WILD-TYPE" "UBXN6 WILD-TYPE" "UBXN6 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
  "UBXN6 MUTATED" "UBXN6 WILD-TYPE" "UBXN6 WILD-TYPE" "UBXN6 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"UBXN6 WILD-TYPE" "UBXN6 WILD-TYPE"   "UBXN6 MUTATED"   "UBXN6 MUTATED" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"UBXN6 WILD-TYPE" "UBXN6 WILD-TYPE" "UBXN6 WILD-TYPE" "UBXN6 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
  "UBXN6 MUTATED" "UBXN6 WILD-TYPE" "UBXN6 WILD-TYPE"   "UBXN6 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"UBXN6 WILD-TYPE" "UBXN6 WILD-TYPE" "UBXN6 WILD-TYPE" "UBXN6 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"UBXN6 WILD-TYPE" "UBXN6 WILD-TYPE" "UBXN6 WILD-TYPE" "UBXN6 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"UBXN6 WILD-TYPE" "UBXN6 WILD-TYPE" "UBXN6 WILD-TYPE" "UBXN6 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"UBXN6 WILD-TYPE" "UBXN6 WILD-TYPE" "UBXN6 WILD-TYPE" "UBXN6 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"UBXN6 WILD-TYPE" "UBXN6 WILD-TYPE" "UBXN6 WILD-TYPE" "UBXN6 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"UBXN6 WILD-TYPE" "UBXN6 WILD-TYPE" "UBXN6 WILD-TYPE" "UBXN6 WILD-TYPE" 
     TCGA-US-A77J 
"UBXN6 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"UBXN6 WILD-TYPE" "UBXN6 WILD-TYPE" "UBXN6 WILD-TYPE"   "UBXN6 MUTATED" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
  "UBXN6 MUTATED" "UBXN6 WILD-TYPE" "UBXN6 WILD-TYPE" "UBXN6 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"UBXN6 WILD-TYPE" "UBXN6 WILD-TYPE" "UBXN6 WILD-TYPE" "UBXN6 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"UBXN6 WILD-TYPE" "UBXN6 WILD-TYPE" "UBXN6 WILD-TYPE" "UBXN6 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
  "UBXN6 MUTATED" "UBXN6 WILD-TYPE" "UBXN6 WILD-TYPE" "UBXN6 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"UBXN6 WILD-TYPE" "UBXN6 WILD-TYPE" "UBXN6 WILD-TYPE" "UBXN6 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"UBXN6 WILD-TYPE" "UBXN6 WILD-TYPE" "UBXN6 WILD-TYPE" "UBXN6 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
  "UBXN6 MUTATED" "UBXN6 WILD-TYPE" "UBXN6 WILD-TYPE" "UBXN6 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"UBXN6 WILD-TYPE" "UBXN6 WILD-TYPE"   "UBXN6 MUTATED"   "UBXN6 MUTATED" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"UBXN6 WILD-TYPE" "UBXN6 WILD-TYPE" "UBXN6 WILD-TYPE" "UBXN6 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
  "UBXN6 MUTATED" "UBXN6 WILD-TYPE" "UBXN6 WILD-TYPE"   "UBXN6 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"UBXN6 WILD-TYPE" "UBXN6 WILD-TYPE" "UBXN6 WILD-TYPE" "UBXN6 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"UBXN6 WILD-TYPE" "UBXN6 WILD-TYPE" "UBXN6 WILD-TYPE" "UBXN6 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"UBXN6 WILD-TYPE" "UBXN6 WILD-TYPE" "UBXN6 WILD-TYPE" "UBXN6 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"UBXN6 WILD-TYPE" "UBXN6 WILD-TYPE" "UBXN6 WILD-TYPE" "UBXN6 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"UBXN6 WILD-TYPE" "UBXN6 WILD-TYPE" "UBXN6 WILD-TYPE" "UBXN6 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"UBXN6 WILD-TYPE" "UBXN6 WILD-TYPE" "UBXN6 WILD-TYPE" "UBXN6 WILD-TYPE" 
     TCGA-US-A77J 
"UBXN6 WILD-TYPE" 
[1] "hr=" "2.9"
D31V2, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  UBXN6 MUTATED          0        0         0         9         0        0
  UBXN6 WILD-TYPE        1        4        11        42         2        3
D31V3, multiclass
                 vv
clus              T1+T2 T3+T4
  UBXN6 MUTATED       1     8
  UBXN6 WILD-TYPE     5    58
D31V4, multiclass
       clus
vv      UBXN6 MUTATED UBXN6 WILD-TYPE
  T1+T2             1               5
  T3+T4             8              58
D31V5, binary
                 cls
clus               0  1
  UBXN6 MUTATED    0  9
  UBXN6 WILD-TYPE 17 45
[1] "tbl2"
                 cls
clus              [,1] [,2]
  UBXN6 MUTATED      0    9
  UBXN6 WILD-TYPE   17   45
   clus
vv  UBXN6 MUTATED UBXN6 WILD-TYPE
  0             0              17
  1             9              45
                 vv
clus              M0 M1 MX
  UBXN6 MUTATED    4  0  5
  UBXN6 WILD-TYPE 35  3 25
D31V6, multiclass
    clus
vv   UBXN6 MUTATED UBXN6 WILD-TYPE
  M0             4              35
  M1             0               3
  MX             5              25
D31V7, binary
                 cls
clus               0  1
  UBXN6 MUTATED    6  3
  UBXN6 WILD-TYPE 30 33
[1] "tbl2"
                 cls
clus              [,1] [,2]
  UBXN6 MUTATED      6    3
  UBXN6 WILD-TYPE   30   33
        clus
vv       UBXN6 MUTATED UBXN6 WILD-TYPE
  FEMALE             6              30
  MALE               3              33
                 vv
clus              PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  UBXN6 MUTATED                                     8
  UBXN6 WILD-TYPE                                  57
                 vv
clus              PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  UBXN6 MUTATED                                       1
  UBXN6 WILD-TYPE                                     3
                 vv
clus              PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  UBXN6 MUTATED                                                  0
  UBXN6 WILD-TYPE                                                2
D31V8, multiclass
                                                  clus
vv                                                 UBXN6 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                          8
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                        1
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA             0
                                                  clus
vv                                                 UBXN6 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                           57
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                          3
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA               2
D31V9, continuous
[1] "Remove cluster labels:" "UBXN6 MUTATED"         
clus
  UBXN6 MUTATED UBXN6 WILD-TYPE 
              2              20 
     TCGA-F2-6880      TCGA-FB-A4P5      TCGA-FB-A4P6      TCGA-FB-A5VM 
"UBXN6 WILD-TYPE" "UBXN6 WILD-TYPE" "UBXN6 WILD-TYPE" "UBXN6 WILD-TYPE" 
     TCGA-FB-A78T      TCGA-FB-A7DR      TCGA-H6-8124      TCGA-H8-A6C1 
"UBXN6 WILD-TYPE" "UBXN6 WILD-TYPE" "UBXN6 WILD-TYPE" "UBXN6 WILD-TYPE" 
     TCGA-IB-7644      TCGA-IB-7649      TCGA-IB-7885      TCGA-IB-7886 
"UBXN6 WILD-TYPE" "UBXN6 WILD-TYPE" "UBXN6 WILD-TYPE" "UBXN6 WILD-TYPE" 
     TCGA-IB-7887      TCGA-IB-7891      TCGA-IB-8126      TCGA-IB-8127 
"UBXN6 WILD-TYPE" "UBXN6 WILD-TYPE" "UBXN6 WILD-TYPE" "UBXN6 WILD-TYPE" 
     TCGA-IB-A5SS      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"UBXN6 WILD-TYPE" "UBXN6 WILD-TYPE" "UBXN6 WILD-TYPE" "UBXN6 WILD-TYPE" 
D31V10, continuous
[1] "Remove cluster labels:" "UBXN6 MUTATED"         
clus
  UBXN6 MUTATED UBXN6 WILD-TYPE 
              1              18 
     TCGA-FB-A4P5      TCGA-FB-A4P6      TCGA-FB-A5VM      TCGA-FB-A78T 
"UBXN6 WILD-TYPE" "UBXN6 WILD-TYPE" "UBXN6 WILD-TYPE" "UBXN6 WILD-TYPE" 
     TCGA-FB-A7DR      TCGA-H6-8124      TCGA-H8-A6C1      TCGA-IB-7644 
"UBXN6 WILD-TYPE" "UBXN6 WILD-TYPE" "UBXN6 WILD-TYPE" "UBXN6 WILD-TYPE" 
     TCGA-IB-7649      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7891 
"UBXN6 WILD-TYPE" "UBXN6 WILD-TYPE" "UBXN6 WILD-TYPE" "UBXN6 WILD-TYPE" 
     TCGA-IB-8126      TCGA-IB-8127      TCGA-IB-A5SS      TCGA-IB-A6UG 
"UBXN6 WILD-TYPE" "UBXN6 WILD-TYPE" "UBXN6 WILD-TYPE" "UBXN6 WILD-TYPE" 
     TCGA-LB-A7SX      TCGA-OE-A75W 
"UBXN6 WILD-TYPE" "UBXN6 WILD-TYPE" 
                 vv
clus              R0 R1 RX
  UBXN6 MUTATED    4  4  0
  UBXN6 WILD-TYPE 38 20  2
D31V11, multiclass
    clus
vv   UBXN6 MUTATED UBXN6 WILD-TYPE
  R0             4              38
  R1             4              20
  RX             0               2
D31V12, continuous

Clustering(32) Variable = MEPCE MUTATION ANALYSIS
D32V1, survival
                 sevent
clus2              0  1
  MEPCE MUTATED    8  6
  MEPCE WILD-TYPE 32 23
  MEPCE MUTATED MEPCE WILD-TYPE 
             14              55 
  MEPCE MUTATED MEPCE WILD-TYPE 
              6              23 
$`MEPCE MUTATED`
TCGA-F2-7276 TCGA-F2-A44H TCGA-FB-A4P6 TCGA-H6-8124 TCGA-HZ-8003 TCGA-HZ-8636 
        7.10        19.27        11.93        12.89         0.69         0.16 
TCGA-HZ-8638 TCGA-HZ-A49H TCGA-IB-7645 TCGA-IB-7651 TCGA-IB-7885 TCGA-IB-7889 
        2.99         0.95        49.38        19.82        27.98        15.81 
TCGA-IB-7893 TCGA-IB-7897 
        3.85        15.98 

$`MEPCE WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-A44G TCGA-FB-A4P5 TCGA-FB-A545 
       10.98         9.70        11.84         5.03         0.13        12.66 
TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR TCGA-FZ-5920 TCGA-FZ-5922 TCGA-FZ-5923 
        2.47         0.03         5.46         2.01        36.20        20.81 
TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7922 
        7.66        13.02         7.89         0.92         0.66         0.13 
TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 
        0.26        12.13        11.87         0.26         0.62         0.79 
TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-A49G TCGA-HZ-A4BH TCGA-HZ-A4BK 
        3.95         0.92         0.53         0.76         6.38         1.51 
TCGA-IB-7644 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7652 TCGA-IB-7886 
       11.41         4.77        21.90        15.35        15.65         4.04 
TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-8126 TCGA-IB-8127 
        3.62        43.79        19.66        16.04         0.56        17.16 
TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG 
       10.82         9.86         7.20        15.12         0.26         1.35 
TCGA-LB-A7SX TCGA-OE-A75W TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E 
        4.18         3.62         8.12        13.68        16.80        14.14 
TCGA-US-A77J 
       18.67 

  MEPCE MUTATED MEPCE WILD-TYPE 
           0.16            0.03 
  MEPCE MUTATED MEPCE WILD-TYPE 
          49.38           43.79 
  MEPCE MUTATED MEPCE WILD-TYPE 
          12.41            7.20 
[1] "0.2 - 49.4 (12.4)" "0.0 - 43.8 (7.2)" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"MEPCE WILD-TYPE" "MEPCE WILD-TYPE" "MEPCE WILD-TYPE"   "MEPCE MUTATED" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"MEPCE WILD-TYPE"   "MEPCE MUTATED" "MEPCE WILD-TYPE"   "MEPCE MUTATED" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"MEPCE WILD-TYPE" "MEPCE WILD-TYPE" "MEPCE WILD-TYPE" "MEPCE WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"MEPCE WILD-TYPE" "MEPCE WILD-TYPE" "MEPCE WILD-TYPE"   "MEPCE MUTATED" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"MEPCE WILD-TYPE" "MEPCE WILD-TYPE" "MEPCE WILD-TYPE" "MEPCE WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"MEPCE WILD-TYPE" "MEPCE WILD-TYPE" "MEPCE WILD-TYPE" "MEPCE WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"MEPCE WILD-TYPE" "MEPCE WILD-TYPE" "MEPCE WILD-TYPE" "MEPCE WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
  "MEPCE MUTATED" "MEPCE WILD-TYPE" "MEPCE WILD-TYPE" "MEPCE WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
  "MEPCE MUTATED"   "MEPCE MUTATED" "MEPCE WILD-TYPE"   "MEPCE MUTATED" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"MEPCE WILD-TYPE" "MEPCE WILD-TYPE" "MEPCE WILD-TYPE"   "MEPCE MUTATED" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"MEPCE WILD-TYPE" "MEPCE WILD-TYPE" "MEPCE WILD-TYPE"   "MEPCE MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"MEPCE WILD-TYPE"   "MEPCE MUTATED" "MEPCE WILD-TYPE" "MEPCE WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"MEPCE WILD-TYPE"   "MEPCE MUTATED" "MEPCE WILD-TYPE" "MEPCE WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
  "MEPCE MUTATED"   "MEPCE MUTATED" "MEPCE WILD-TYPE" "MEPCE WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"MEPCE WILD-TYPE" "MEPCE WILD-TYPE" "MEPCE WILD-TYPE" "MEPCE WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"MEPCE WILD-TYPE" "MEPCE WILD-TYPE" "MEPCE WILD-TYPE" "MEPCE WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"MEPCE WILD-TYPE" "MEPCE WILD-TYPE" "MEPCE WILD-TYPE" "MEPCE WILD-TYPE" 
     TCGA-US-A77J 
"MEPCE WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"MEPCE WILD-TYPE" "MEPCE WILD-TYPE" "MEPCE WILD-TYPE"   "MEPCE MUTATED" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"MEPCE WILD-TYPE"   "MEPCE MUTATED" "MEPCE WILD-TYPE"   "MEPCE MUTATED" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"MEPCE WILD-TYPE" "MEPCE WILD-TYPE" "MEPCE WILD-TYPE" "MEPCE WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"MEPCE WILD-TYPE" "MEPCE WILD-TYPE" "MEPCE WILD-TYPE"   "MEPCE MUTATED" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"MEPCE WILD-TYPE" "MEPCE WILD-TYPE" "MEPCE WILD-TYPE" "MEPCE WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"MEPCE WILD-TYPE" "MEPCE WILD-TYPE" "MEPCE WILD-TYPE" "MEPCE WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"MEPCE WILD-TYPE" "MEPCE WILD-TYPE" "MEPCE WILD-TYPE" "MEPCE WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
  "MEPCE MUTATED" "MEPCE WILD-TYPE" "MEPCE WILD-TYPE" "MEPCE WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
  "MEPCE MUTATED"   "MEPCE MUTATED" "MEPCE WILD-TYPE"   "MEPCE MUTATED" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"MEPCE WILD-TYPE" "MEPCE WILD-TYPE" "MEPCE WILD-TYPE"   "MEPCE MUTATED" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"MEPCE WILD-TYPE" "MEPCE WILD-TYPE" "MEPCE WILD-TYPE"   "MEPCE MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"MEPCE WILD-TYPE"   "MEPCE MUTATED" "MEPCE WILD-TYPE" "MEPCE WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"MEPCE WILD-TYPE"   "MEPCE MUTATED" "MEPCE WILD-TYPE" "MEPCE WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
  "MEPCE MUTATED"   "MEPCE MUTATED" "MEPCE WILD-TYPE" "MEPCE WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"MEPCE WILD-TYPE" "MEPCE WILD-TYPE" "MEPCE WILD-TYPE" "MEPCE WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"MEPCE WILD-TYPE" "MEPCE WILD-TYPE" "MEPCE WILD-TYPE" "MEPCE WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"MEPCE WILD-TYPE" "MEPCE WILD-TYPE" "MEPCE WILD-TYPE" "MEPCE WILD-TYPE" 
     TCGA-US-A77J 
"MEPCE WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"MEPCE WILD-TYPE" "MEPCE WILD-TYPE" "MEPCE WILD-TYPE"   "MEPCE MUTATED" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"MEPCE WILD-TYPE"   "MEPCE MUTATED" "MEPCE WILD-TYPE"   "MEPCE MUTATED" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"MEPCE WILD-TYPE" "MEPCE WILD-TYPE" "MEPCE WILD-TYPE" "MEPCE WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"MEPCE WILD-TYPE" "MEPCE WILD-TYPE" "MEPCE WILD-TYPE"   "MEPCE MUTATED" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"MEPCE WILD-TYPE" "MEPCE WILD-TYPE" "MEPCE WILD-TYPE" "MEPCE WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"MEPCE WILD-TYPE" "MEPCE WILD-TYPE" "MEPCE WILD-TYPE" "MEPCE WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"MEPCE WILD-TYPE" "MEPCE WILD-TYPE" "MEPCE WILD-TYPE" "MEPCE WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
  "MEPCE MUTATED" "MEPCE WILD-TYPE" "MEPCE WILD-TYPE" "MEPCE WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
  "MEPCE MUTATED"   "MEPCE MUTATED" "MEPCE WILD-TYPE"   "MEPCE MUTATED" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"MEPCE WILD-TYPE" "MEPCE WILD-TYPE" "MEPCE WILD-TYPE"   "MEPCE MUTATED" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"MEPCE WILD-TYPE" "MEPCE WILD-TYPE" "MEPCE WILD-TYPE"   "MEPCE MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"MEPCE WILD-TYPE"   "MEPCE MUTATED" "MEPCE WILD-TYPE" "MEPCE WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"MEPCE WILD-TYPE"   "MEPCE MUTATED" "MEPCE WILD-TYPE" "MEPCE WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
  "MEPCE MUTATED"   "MEPCE MUTATED" "MEPCE WILD-TYPE" "MEPCE WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"MEPCE WILD-TYPE" "MEPCE WILD-TYPE" "MEPCE WILD-TYPE" "MEPCE WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"MEPCE WILD-TYPE" "MEPCE WILD-TYPE" "MEPCE WILD-TYPE" "MEPCE WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"MEPCE WILD-TYPE" "MEPCE WILD-TYPE" "MEPCE WILD-TYPE" "MEPCE WILD-TYPE" 
     TCGA-US-A77J 
"MEPCE WILD-TYPE" 
[1] "hr=" "2"  
D32V2, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  MEPCE MUTATED          1        1         2        10         0        1
  MEPCE WILD-TYPE        0        3         9        41         2        2
D32V3, multiclass
                 vv
clus              T1+T2 T3+T4
  MEPCE MUTATED       2    13
  MEPCE WILD-TYPE     4    53
D32V4, multiclass
       clus
vv      MEPCE MUTATED MEPCE WILD-TYPE
  T1+T2             2               4
  T3+T4            13              53
D32V5, binary
                 cls
clus               0  1
  MEPCE MUTATED    5 10
  MEPCE WILD-TYPE 12 44
[1] "tbl2"
                 cls
clus              [,1] [,2]
  MEPCE MUTATED      5   10
  MEPCE WILD-TYPE   12   44
   clus
vv  MEPCE MUTATED MEPCE WILD-TYPE
  0             5              12
  1            10              44
                 vv
clus              M0 M1 MX
  MEPCE MUTATED    9  1  5
  MEPCE WILD-TYPE 30  2 25
D32V6, multiclass
    clus
vv   MEPCE MUTATED MEPCE WILD-TYPE
  M0             9              30
  M1             1               2
  MX             5              25
D32V7, binary
                 cls
clus               0  1
  MEPCE MUTATED   10  5
  MEPCE WILD-TYPE 26 31
[1] "tbl2"
                 cls
clus              [,1] [,2]
  MEPCE MUTATED     10    5
  MEPCE WILD-TYPE   26   31
        clus
vv       MEPCE MUTATED MEPCE WILD-TYPE
  FEMALE            10              26
  MALE               5              31
                 vv
clus              PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  MEPCE MUTATED                                    14
  MEPCE WILD-TYPE                                  51
                 vv
clus              PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  MEPCE MUTATED                                       0
  MEPCE WILD-TYPE                                     4
                 vv
clus              PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  MEPCE MUTATED                                                  1
  MEPCE WILD-TYPE                                                1
D32V8, multiclass
                                                  clus
vv                                                 MEPCE MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                         14
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                        0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA             1
                                                  clus
vv                                                 MEPCE WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                           51
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                          4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA               1
D32V9, continuous
D32V10, continuous
                 vv
clus              R0 R1 RX
  MEPCE MUTATED   13  1  0
  MEPCE WILD-TYPE 29 23  2
D32V11, multiclass
    clus
vv   MEPCE MUTATED MEPCE WILD-TYPE
  R0            13              29
  R1             1              23
  RX             0               2
D32V12, continuous

Clustering(33) Variable = CRAT MUTATION ANALYSIS
D33V1, survival
                sevent
clus2             0  1
  CRAT MUTATED    4  0
  CRAT WILD-TYPE 36 29
  CRAT MUTATED CRAT WILD-TYPE 
             4             65 
  CRAT MUTATED CRAT WILD-TYPE 
             0             29 
$`CRAT MUTATED`
TCGA-F2-A44H TCGA-FB-A545 TCGA-IB-8126 TCGA-IB-A5SO 
       19.27        12.66         0.56        10.82 

$`CRAT WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-FB-A4P5 
       10.98         9.70        11.84         7.10         5.03         0.13 
TCGA-FB-A4P6 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR TCGA-FZ-5920 TCGA-FZ-5922 
       11.93         2.47         0.03         5.46         2.01        36.20 
TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7289 TCGA-HZ-7918 
       20.81        12.89         7.66        13.02         7.89         0.92 
TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 
        0.66         0.13         0.26        12.13        11.87         0.26 
TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 
        0.62         0.79         0.69         3.95         0.92         0.53 
TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK 
        0.16         2.99         0.76         0.95         6.38         1.51 
TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7651 
       11.41        49.38         4.77        21.90        15.35        19.82 
TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 
       15.65        27.98         4.04         3.62        43.79        15.81 
TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-8127 TCGA-IB-A5SP 
       19.66        16.04         3.85        15.98        17.16         9.86 
TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W 
        7.20        15.12         0.26         1.35         4.18         3.62 
TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
        8.12        13.68        16.80        14.14        18.67 

  CRAT MUTATED CRAT WILD-TYPE 
          0.56           0.03 
  CRAT MUTATED CRAT WILD-TYPE 
         19.27          49.38 
  CRAT MUTATED CRAT WILD-TYPE 
         11.74           7.20 
[1] "0.6 - 19.3 (11.7)" "0.0 - 49.4 (7.2)" 
    TCGA-F2-6879     TCGA-F2-6880     TCGA-F2-7273     TCGA-F2-7276 
"CRAT WILD-TYPE" "CRAT WILD-TYPE" "CRAT WILD-TYPE" "CRAT WILD-TYPE" 
    TCGA-F2-A44G     TCGA-F2-A44H     TCGA-FB-A4P5     TCGA-FB-A4P6 
"CRAT WILD-TYPE"   "CRAT MUTATED" "CRAT WILD-TYPE" "CRAT WILD-TYPE" 
    TCGA-FB-A545     TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-FB-A7DR 
  "CRAT MUTATED" "CRAT WILD-TYPE" "CRAT WILD-TYPE" "CRAT WILD-TYPE" 
    TCGA-FZ-5920     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-H6-8124 
"CRAT WILD-TYPE" "CRAT WILD-TYPE" "CRAT WILD-TYPE" "CRAT WILD-TYPE" 
    TCGA-H6-A45N     TCGA-H8-A6C1     TCGA-HZ-7289     TCGA-HZ-7918 
"CRAT WILD-TYPE" "CRAT WILD-TYPE" "CRAT WILD-TYPE" "CRAT WILD-TYPE" 
    TCGA-HZ-7919     TCGA-HZ-7922     TCGA-HZ-7923     TCGA-HZ-7924 
"CRAT WILD-TYPE" "CRAT WILD-TYPE" "CRAT WILD-TYPE" "CRAT WILD-TYPE" 
    TCGA-HZ-7925     TCGA-HZ-7926     TCGA-HZ-8001     TCGA-HZ-8002 
"CRAT WILD-TYPE" "CRAT WILD-TYPE" "CRAT WILD-TYPE" "CRAT WILD-TYPE" 
    TCGA-HZ-8003     TCGA-HZ-8005     TCGA-HZ-8315     TCGA-HZ-8317 
"CRAT WILD-TYPE" "CRAT WILD-TYPE" "CRAT WILD-TYPE" "CRAT WILD-TYPE" 
    TCGA-HZ-8636     TCGA-HZ-8638     TCGA-HZ-A49G     TCGA-HZ-A49H 
"CRAT WILD-TYPE" "CRAT WILD-TYPE" "CRAT WILD-TYPE" "CRAT WILD-TYPE" 
    TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-IB-7644     TCGA-IB-7645 
"CRAT WILD-TYPE" "CRAT WILD-TYPE" "CRAT WILD-TYPE" "CRAT WILD-TYPE" 
    TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7651 
"CRAT WILD-TYPE" "CRAT WILD-TYPE" "CRAT WILD-TYPE" "CRAT WILD-TYPE" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887 
"CRAT WILD-TYPE" "CRAT WILD-TYPE" "CRAT WILD-TYPE" "CRAT WILD-TYPE" 
    TCGA-IB-7888     TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891 
"CRAT WILD-TYPE" "CRAT WILD-TYPE" "CRAT WILD-TYPE" "CRAT WILD-TYPE" 
    TCGA-IB-7893     TCGA-IB-7897     TCGA-IB-8126     TCGA-IB-8127 
"CRAT WILD-TYPE" "CRAT WILD-TYPE"   "CRAT MUTATED" "CRAT WILD-TYPE" 
    TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS 
  "CRAT MUTATED" "CRAT WILD-TYPE" "CRAT WILD-TYPE" "CRAT WILD-TYPE" 
    TCGA-IB-A5ST     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
"CRAT WILD-TYPE" "CRAT WILD-TYPE" "CRAT WILD-TYPE" "CRAT WILD-TYPE" 
    TCGA-PZ-A5RE     TCGA-Q3-A5QY     TCGA-US-A779     TCGA-US-A77E 
"CRAT WILD-TYPE" "CRAT WILD-TYPE" "CRAT WILD-TYPE" "CRAT WILD-TYPE" 
    TCGA-US-A77J 
"CRAT WILD-TYPE" 
    TCGA-F2-6879     TCGA-F2-6880     TCGA-F2-7273     TCGA-F2-7276 
"CRAT WILD-TYPE" "CRAT WILD-TYPE" "CRAT WILD-TYPE" "CRAT WILD-TYPE" 
    TCGA-F2-A44G     TCGA-F2-A44H     TCGA-FB-A4P5     TCGA-FB-A4P6 
"CRAT WILD-TYPE"   "CRAT MUTATED" "CRAT WILD-TYPE" "CRAT WILD-TYPE" 
    TCGA-FB-A545     TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-FB-A7DR 
  "CRAT MUTATED" "CRAT WILD-TYPE" "CRAT WILD-TYPE" "CRAT WILD-TYPE" 
    TCGA-FZ-5920     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-H6-8124 
"CRAT WILD-TYPE" "CRAT WILD-TYPE" "CRAT WILD-TYPE" "CRAT WILD-TYPE" 
    TCGA-H6-A45N     TCGA-H8-A6C1     TCGA-HZ-7289     TCGA-HZ-7918 
"CRAT WILD-TYPE" "CRAT WILD-TYPE" "CRAT WILD-TYPE" "CRAT WILD-TYPE" 
    TCGA-HZ-7919     TCGA-HZ-7922     TCGA-HZ-7923     TCGA-HZ-7924 
"CRAT WILD-TYPE" "CRAT WILD-TYPE" "CRAT WILD-TYPE" "CRAT WILD-TYPE" 
    TCGA-HZ-7925     TCGA-HZ-7926     TCGA-HZ-8001     TCGA-HZ-8002 
"CRAT WILD-TYPE" "CRAT WILD-TYPE" "CRAT WILD-TYPE" "CRAT WILD-TYPE" 
    TCGA-HZ-8003     TCGA-HZ-8005     TCGA-HZ-8315     TCGA-HZ-8317 
"CRAT WILD-TYPE" "CRAT WILD-TYPE" "CRAT WILD-TYPE" "CRAT WILD-TYPE" 
    TCGA-HZ-8636     TCGA-HZ-8638     TCGA-HZ-A49G     TCGA-HZ-A49H 
"CRAT WILD-TYPE" "CRAT WILD-TYPE" "CRAT WILD-TYPE" "CRAT WILD-TYPE" 
    TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-IB-7644     TCGA-IB-7645 
"CRAT WILD-TYPE" "CRAT WILD-TYPE" "CRAT WILD-TYPE" "CRAT WILD-TYPE" 
    TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7651 
"CRAT WILD-TYPE" "CRAT WILD-TYPE" "CRAT WILD-TYPE" "CRAT WILD-TYPE" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887 
"CRAT WILD-TYPE" "CRAT WILD-TYPE" "CRAT WILD-TYPE" "CRAT WILD-TYPE" 
    TCGA-IB-7888     TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891 
"CRAT WILD-TYPE" "CRAT WILD-TYPE" "CRAT WILD-TYPE" "CRAT WILD-TYPE" 
    TCGA-IB-7893     TCGA-IB-7897     TCGA-IB-8126     TCGA-IB-8127 
"CRAT WILD-TYPE" "CRAT WILD-TYPE"   "CRAT MUTATED" "CRAT WILD-TYPE" 
    TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS 
  "CRAT MUTATED" "CRAT WILD-TYPE" "CRAT WILD-TYPE" "CRAT WILD-TYPE" 
    TCGA-IB-A5ST     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
"CRAT WILD-TYPE" "CRAT WILD-TYPE" "CRAT WILD-TYPE" "CRAT WILD-TYPE" 
    TCGA-PZ-A5RE     TCGA-Q3-A5QY     TCGA-US-A779     TCGA-US-A77E 
"CRAT WILD-TYPE" "CRAT WILD-TYPE" "CRAT WILD-TYPE" "CRAT WILD-TYPE" 
    TCGA-US-A77J 
"CRAT WILD-TYPE" 
    TCGA-F2-6879     TCGA-F2-6880     TCGA-F2-7273     TCGA-F2-7276 
"CRAT WILD-TYPE" "CRAT WILD-TYPE" "CRAT WILD-TYPE" "CRAT WILD-TYPE" 
    TCGA-F2-A44G     TCGA-F2-A44H     TCGA-FB-A4P5     TCGA-FB-A4P6 
"CRAT WILD-TYPE"   "CRAT MUTATED" "CRAT WILD-TYPE" "CRAT WILD-TYPE" 
    TCGA-FB-A545     TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-FB-A7DR 
  "CRAT MUTATED" "CRAT WILD-TYPE" "CRAT WILD-TYPE" "CRAT WILD-TYPE" 
    TCGA-FZ-5920     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-H6-8124 
"CRAT WILD-TYPE" "CRAT WILD-TYPE" "CRAT WILD-TYPE" "CRAT WILD-TYPE" 
    TCGA-H6-A45N     TCGA-H8-A6C1     TCGA-HZ-7289     TCGA-HZ-7918 
"CRAT WILD-TYPE" "CRAT WILD-TYPE" "CRAT WILD-TYPE" "CRAT WILD-TYPE" 
    TCGA-HZ-7919     TCGA-HZ-7922     TCGA-HZ-7923     TCGA-HZ-7924 
"CRAT WILD-TYPE" "CRAT WILD-TYPE" "CRAT WILD-TYPE" "CRAT WILD-TYPE" 
    TCGA-HZ-7925     TCGA-HZ-7926     TCGA-HZ-8001     TCGA-HZ-8002 
"CRAT WILD-TYPE" "CRAT WILD-TYPE" "CRAT WILD-TYPE" "CRAT WILD-TYPE" 
    TCGA-HZ-8003     TCGA-HZ-8005     TCGA-HZ-8315     TCGA-HZ-8317 
"CRAT WILD-TYPE" "CRAT WILD-TYPE" "CRAT WILD-TYPE" "CRAT WILD-TYPE" 
    TCGA-HZ-8636     TCGA-HZ-8638     TCGA-HZ-A49G     TCGA-HZ-A49H 
"CRAT WILD-TYPE" "CRAT WILD-TYPE" "CRAT WILD-TYPE" "CRAT WILD-TYPE" 
    TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-IB-7644     TCGA-IB-7645 
"CRAT WILD-TYPE" "CRAT WILD-TYPE" "CRAT WILD-TYPE" "CRAT WILD-TYPE" 
    TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7651 
"CRAT WILD-TYPE" "CRAT WILD-TYPE" "CRAT WILD-TYPE" "CRAT WILD-TYPE" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887 
"CRAT WILD-TYPE" "CRAT WILD-TYPE" "CRAT WILD-TYPE" "CRAT WILD-TYPE" 
    TCGA-IB-7888     TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891 
"CRAT WILD-TYPE" "CRAT WILD-TYPE" "CRAT WILD-TYPE" "CRAT WILD-TYPE" 
    TCGA-IB-7893     TCGA-IB-7897     TCGA-IB-8126     TCGA-IB-8127 
"CRAT WILD-TYPE" "CRAT WILD-TYPE"   "CRAT MUTATED" "CRAT WILD-TYPE" 
    TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS 
  "CRAT MUTATED" "CRAT WILD-TYPE" "CRAT WILD-TYPE" "CRAT WILD-TYPE" 
    TCGA-IB-A5ST     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
"CRAT WILD-TYPE" "CRAT WILD-TYPE" "CRAT WILD-TYPE" "CRAT WILD-TYPE" 
    TCGA-PZ-A5RE     TCGA-Q3-A5QY     TCGA-US-A779     TCGA-US-A77E 
"CRAT WILD-TYPE" "CRAT WILD-TYPE" "CRAT WILD-TYPE" "CRAT WILD-TYPE" 
    TCGA-US-A77J 
"CRAT WILD-TYPE" 
[1] "hr="     "7.4e+07"
D33V2, continuous
                vv
clus             STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  CRAT MUTATED          0        1         1         3         1        0
  CRAT WILD-TYPE        1        3        10        48         1        3
D33V3, multiclass
                vv
clus             T1+T2 T3+T4
  CRAT MUTATED       1     5
  CRAT WILD-TYPE     5    61
D33V4, multiclass
       clus
vv      CRAT MUTATED CRAT WILD-TYPE
  T1+T2            1              5
  T3+T4            5             61
D33V5, binary
                cls
clus              0  1
  CRAT MUTATED    2  4
  CRAT WILD-TYPE 15 50
[1] "tbl2"
                cls
clus             [,1] [,2]
  CRAT MUTATED      2    4
  CRAT WILD-TYPE   15   50
   clus
vv  CRAT MUTATED CRAT WILD-TYPE
  0            2             15
  1            4             50
                vv
clus             M0 M1 MX
  CRAT MUTATED    4  0  2
  CRAT WILD-TYPE 35  3 28
D33V6, multiclass
    clus
vv   CRAT MUTATED CRAT WILD-TYPE
  M0            4             35
  M1            0              3
  MX            2             28
D33V7, binary
                cls
clus              0  1
  CRAT MUTATED    3  3
  CRAT WILD-TYPE 33 33
[1] "tbl2"
                cls
clus             [,1] [,2]
  CRAT MUTATED      3    3
  CRAT WILD-TYPE   33   33
        clus
vv       CRAT MUTATED CRAT WILD-TYPE
  FEMALE            3             33
  MALE              3             33
                vv
clus             PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  CRAT MUTATED                                     6
  CRAT WILD-TYPE                                  59
                vv
clus             PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  CRAT MUTATED                                       0
  CRAT WILD-TYPE                                     4
                vv
clus             PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  CRAT MUTATED                                                  0
  CRAT WILD-TYPE                                                2
D33V8, multiclass
                                                  clus
vv                                                 CRAT MUTATED CRAT WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                         6             59
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                       0              4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA            0              2
D33V9, continuous
[1] "Remove cluster labels:" "CRAT MUTATED"          
clus
  CRAT MUTATED CRAT WILD-TYPE 
             1             21 
    TCGA-F2-6880     TCGA-FB-A4P5     TCGA-FB-A4P6     TCGA-FB-A5VM 
"CRAT WILD-TYPE" "CRAT WILD-TYPE" "CRAT WILD-TYPE" "CRAT WILD-TYPE" 
    TCGA-FB-A78T     TCGA-FB-A7DR     TCGA-H6-8124     TCGA-H6-A45N 
"CRAT WILD-TYPE" "CRAT WILD-TYPE" "CRAT WILD-TYPE" "CRAT WILD-TYPE" 
    TCGA-H8-A6C1     TCGA-IB-7644     TCGA-IB-7649     TCGA-IB-7651 
"CRAT WILD-TYPE" "CRAT WILD-TYPE" "CRAT WILD-TYPE" "CRAT WILD-TYPE" 
    TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887     TCGA-IB-7891 
"CRAT WILD-TYPE" "CRAT WILD-TYPE" "CRAT WILD-TYPE" "CRAT WILD-TYPE" 
    TCGA-IB-8127     TCGA-IB-A5SS     TCGA-IB-A6UG     TCGA-LB-A7SX 
"CRAT WILD-TYPE" "CRAT WILD-TYPE" "CRAT WILD-TYPE" "CRAT WILD-TYPE" 
    TCGA-OE-A75W 
"CRAT WILD-TYPE" 
D33V10, continuous
[1] "Remove cluster labels:" "CRAT MUTATED"          
clus
  CRAT MUTATED CRAT WILD-TYPE 
             1             18 
    TCGA-FB-A4P5     TCGA-FB-A4P6     TCGA-FB-A5VM     TCGA-FB-A78T 
"CRAT WILD-TYPE" "CRAT WILD-TYPE" "CRAT WILD-TYPE" "CRAT WILD-TYPE" 
    TCGA-FB-A7DR     TCGA-H6-8124     TCGA-H8-A6C1     TCGA-IB-7644 
"CRAT WILD-TYPE" "CRAT WILD-TYPE" "CRAT WILD-TYPE" "CRAT WILD-TYPE" 
    TCGA-IB-7649     TCGA-IB-7651     TCGA-IB-7885     TCGA-IB-7886 
"CRAT WILD-TYPE" "CRAT WILD-TYPE" "CRAT WILD-TYPE" "CRAT WILD-TYPE" 
    TCGA-IB-7891     TCGA-IB-8127     TCGA-IB-A5SS     TCGA-IB-A6UG 
"CRAT WILD-TYPE" "CRAT WILD-TYPE" "CRAT WILD-TYPE" "CRAT WILD-TYPE" 
    TCGA-LB-A7SX     TCGA-OE-A75W 
"CRAT WILD-TYPE" "CRAT WILD-TYPE" 
                vv
clus             R0 R1 RX
  CRAT MUTATED    4  1  0
  CRAT WILD-TYPE 38 23  2
D33V11, multiclass
    clus
vv   CRAT MUTATED CRAT WILD-TYPE
  R0            4             38
  R1            1             23
  RX            0              2
D33V12, continuous

Clustering(34) Variable = MBD3 MUTATION ANALYSIS
D34V1, survival
                sevent
clus2             0  1
  MBD3 MUTATED    6  6
  MBD3 WILD-TYPE 34 23
  MBD3 MUTATED MBD3 WILD-TYPE 
            12             57 
  MBD3 MUTATED MBD3 WILD-TYPE 
             6             23 
$`MBD3 MUTATED`
TCGA-F2-7273 TCGA-FB-A545 TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-8005 TCGA-HZ-A49G 
       11.84        12.66         0.66         0.13         3.95         0.76 
TCGA-HZ-A4BH TCGA-IB-7645 TCGA-IB-7651 TCGA-IB-7888 TCGA-IB-7893 TCGA-IB-A5SO 
        6.38        49.38        19.82        43.79         3.85        10.82 

$`MBD3 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H TCGA-FB-A4P5 
       10.98         9.70         7.10         5.03        19.27         0.13 
TCGA-FB-A4P6 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR TCGA-FZ-5920 TCGA-FZ-5922 
       11.93         2.47         0.03         5.46         2.01        36.20 
TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7289 TCGA-HZ-7918 
       20.81        12.89         7.66        13.02         7.89         0.92 
TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 
        0.26        12.13        11.87         0.26         0.62         0.79 
TCGA-HZ-8003 TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49H 
        0.69         0.92         0.53         0.16         2.99         0.95 
TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7652 
        1.51        11.41         4.77        21.90        15.35        15.65 
TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 
       27.98         4.04         3.62        15.81        19.66        16.04 
TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS 
       15.98         0.56        17.16         9.86         7.20        15.12 
TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W TCGA-PZ-A5RE TCGA-Q3-A5QY 
        0.26         1.35         4.18         3.62         8.12        13.68 
TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
       16.80        14.14        18.67 

  MBD3 MUTATED MBD3 WILD-TYPE 
          0.13           0.03 
  MBD3 MUTATED MBD3 WILD-TYPE 
         49.38          36.20 
  MBD3 MUTATED MBD3 WILD-TYPE 
          8.60           7.66 
[1] "0.1 - 49.4 (8.6)" "0.0 - 36.2 (7.7)"
    TCGA-F2-6879     TCGA-F2-6880     TCGA-F2-7273     TCGA-F2-7276 
"MBD3 WILD-TYPE" "MBD3 WILD-TYPE"   "MBD3 MUTATED" "MBD3 WILD-TYPE" 
    TCGA-F2-A44G     TCGA-F2-A44H     TCGA-FB-A4P5     TCGA-FB-A4P6 
"MBD3 WILD-TYPE" "MBD3 WILD-TYPE" "MBD3 WILD-TYPE" "MBD3 WILD-TYPE" 
    TCGA-FB-A545     TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-FB-A7DR 
  "MBD3 MUTATED" "MBD3 WILD-TYPE" "MBD3 WILD-TYPE" "MBD3 WILD-TYPE" 
    TCGA-FZ-5920     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-H6-8124 
"MBD3 WILD-TYPE" "MBD3 WILD-TYPE" "MBD3 WILD-TYPE" "MBD3 WILD-TYPE" 
    TCGA-H6-A45N     TCGA-H8-A6C1     TCGA-HZ-7289     TCGA-HZ-7918 
"MBD3 WILD-TYPE" "MBD3 WILD-TYPE" "MBD3 WILD-TYPE" "MBD3 WILD-TYPE" 
    TCGA-HZ-7919     TCGA-HZ-7922     TCGA-HZ-7923     TCGA-HZ-7924 
  "MBD3 MUTATED"   "MBD3 MUTATED" "MBD3 WILD-TYPE" "MBD3 WILD-TYPE" 
    TCGA-HZ-7925     TCGA-HZ-7926     TCGA-HZ-8001     TCGA-HZ-8002 
"MBD3 WILD-TYPE" "MBD3 WILD-TYPE" "MBD3 WILD-TYPE" "MBD3 WILD-TYPE" 
    TCGA-HZ-8003     TCGA-HZ-8005     TCGA-HZ-8315     TCGA-HZ-8317 
"MBD3 WILD-TYPE"   "MBD3 MUTATED" "MBD3 WILD-TYPE" "MBD3 WILD-TYPE" 
    TCGA-HZ-8636     TCGA-HZ-8638     TCGA-HZ-A49G     TCGA-HZ-A49H 
"MBD3 WILD-TYPE" "MBD3 WILD-TYPE"   "MBD3 MUTATED" "MBD3 WILD-TYPE" 
    TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-IB-7644     TCGA-IB-7645 
  "MBD3 MUTATED" "MBD3 WILD-TYPE" "MBD3 WILD-TYPE"   "MBD3 MUTATED" 
    TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7651 
"MBD3 WILD-TYPE" "MBD3 WILD-TYPE" "MBD3 WILD-TYPE"   "MBD3 MUTATED" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887 
"MBD3 WILD-TYPE" "MBD3 WILD-TYPE" "MBD3 WILD-TYPE" "MBD3 WILD-TYPE" 
    TCGA-IB-7888     TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891 
  "MBD3 MUTATED" "MBD3 WILD-TYPE" "MBD3 WILD-TYPE" "MBD3 WILD-TYPE" 
    TCGA-IB-7893     TCGA-IB-7897     TCGA-IB-8126     TCGA-IB-8127 
  "MBD3 MUTATED" "MBD3 WILD-TYPE" "MBD3 WILD-TYPE" "MBD3 WILD-TYPE" 
    TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS 
  "MBD3 MUTATED" "MBD3 WILD-TYPE" "MBD3 WILD-TYPE" "MBD3 WILD-TYPE" 
    TCGA-IB-A5ST     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
"MBD3 WILD-TYPE" "MBD3 WILD-TYPE" "MBD3 WILD-TYPE" "MBD3 WILD-TYPE" 
    TCGA-PZ-A5RE     TCGA-Q3-A5QY     TCGA-US-A779     TCGA-US-A77E 
"MBD3 WILD-TYPE" "MBD3 WILD-TYPE" "MBD3 WILD-TYPE" "MBD3 WILD-TYPE" 
    TCGA-US-A77J 
"MBD3 WILD-TYPE" 
    TCGA-F2-6879     TCGA-F2-6880     TCGA-F2-7273     TCGA-F2-7276 
"MBD3 WILD-TYPE" "MBD3 WILD-TYPE"   "MBD3 MUTATED" "MBD3 WILD-TYPE" 
    TCGA-F2-A44G     TCGA-F2-A44H     TCGA-FB-A4P5     TCGA-FB-A4P6 
"MBD3 WILD-TYPE" "MBD3 WILD-TYPE" "MBD3 WILD-TYPE" "MBD3 WILD-TYPE" 
    TCGA-FB-A545     TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-FB-A7DR 
  "MBD3 MUTATED" "MBD3 WILD-TYPE" "MBD3 WILD-TYPE" "MBD3 WILD-TYPE" 
    TCGA-FZ-5920     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-H6-8124 
"MBD3 WILD-TYPE" "MBD3 WILD-TYPE" "MBD3 WILD-TYPE" "MBD3 WILD-TYPE" 
    TCGA-H6-A45N     TCGA-H8-A6C1     TCGA-HZ-7289     TCGA-HZ-7918 
"MBD3 WILD-TYPE" "MBD3 WILD-TYPE" "MBD3 WILD-TYPE" "MBD3 WILD-TYPE" 
    TCGA-HZ-7919     TCGA-HZ-7922     TCGA-HZ-7923     TCGA-HZ-7924 
  "MBD3 MUTATED"   "MBD3 MUTATED" "MBD3 WILD-TYPE" "MBD3 WILD-TYPE" 
    TCGA-HZ-7925     TCGA-HZ-7926     TCGA-HZ-8001     TCGA-HZ-8002 
"MBD3 WILD-TYPE" "MBD3 WILD-TYPE" "MBD3 WILD-TYPE" "MBD3 WILD-TYPE" 
    TCGA-HZ-8003     TCGA-HZ-8005     TCGA-HZ-8315     TCGA-HZ-8317 
"MBD3 WILD-TYPE"   "MBD3 MUTATED" "MBD3 WILD-TYPE" "MBD3 WILD-TYPE" 
    TCGA-HZ-8636     TCGA-HZ-8638     TCGA-HZ-A49G     TCGA-HZ-A49H 
"MBD3 WILD-TYPE" "MBD3 WILD-TYPE"   "MBD3 MUTATED" "MBD3 WILD-TYPE" 
    TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-IB-7644     TCGA-IB-7645 
  "MBD3 MUTATED" "MBD3 WILD-TYPE" "MBD3 WILD-TYPE"   "MBD3 MUTATED" 
    TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7651 
"MBD3 WILD-TYPE" "MBD3 WILD-TYPE" "MBD3 WILD-TYPE"   "MBD3 MUTATED" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887 
"MBD3 WILD-TYPE" "MBD3 WILD-TYPE" "MBD3 WILD-TYPE" "MBD3 WILD-TYPE" 
    TCGA-IB-7888     TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891 
  "MBD3 MUTATED" "MBD3 WILD-TYPE" "MBD3 WILD-TYPE" "MBD3 WILD-TYPE" 
    TCGA-IB-7893     TCGA-IB-7897     TCGA-IB-8126     TCGA-IB-8127 
  "MBD3 MUTATED" "MBD3 WILD-TYPE" "MBD3 WILD-TYPE" "MBD3 WILD-TYPE" 
    TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS 
  "MBD3 MUTATED" "MBD3 WILD-TYPE" "MBD3 WILD-TYPE" "MBD3 WILD-TYPE" 
    TCGA-IB-A5ST     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
"MBD3 WILD-TYPE" "MBD3 WILD-TYPE" "MBD3 WILD-TYPE" "MBD3 WILD-TYPE" 
    TCGA-PZ-A5RE     TCGA-Q3-A5QY     TCGA-US-A779     TCGA-US-A77E 
"MBD3 WILD-TYPE" "MBD3 WILD-TYPE" "MBD3 WILD-TYPE" "MBD3 WILD-TYPE" 
    TCGA-US-A77J 
"MBD3 WILD-TYPE" 
    TCGA-F2-6879     TCGA-F2-6880     TCGA-F2-7273     TCGA-F2-7276 
"MBD3 WILD-TYPE" "MBD3 WILD-TYPE"   "MBD3 MUTATED" "MBD3 WILD-TYPE" 
    TCGA-F2-A44G     TCGA-F2-A44H     TCGA-FB-A4P5     TCGA-FB-A4P6 
"MBD3 WILD-TYPE" "MBD3 WILD-TYPE" "MBD3 WILD-TYPE" "MBD3 WILD-TYPE" 
    TCGA-FB-A545     TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-FB-A7DR 
  "MBD3 MUTATED" "MBD3 WILD-TYPE" "MBD3 WILD-TYPE" "MBD3 WILD-TYPE" 
    TCGA-FZ-5920     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-H6-8124 
"MBD3 WILD-TYPE" "MBD3 WILD-TYPE" "MBD3 WILD-TYPE" "MBD3 WILD-TYPE" 
    TCGA-H6-A45N     TCGA-H8-A6C1     TCGA-HZ-7289     TCGA-HZ-7918 
"MBD3 WILD-TYPE" "MBD3 WILD-TYPE" "MBD3 WILD-TYPE" "MBD3 WILD-TYPE" 
    TCGA-HZ-7919     TCGA-HZ-7922     TCGA-HZ-7923     TCGA-HZ-7924 
  "MBD3 MUTATED"   "MBD3 MUTATED" "MBD3 WILD-TYPE" "MBD3 WILD-TYPE" 
    TCGA-HZ-7925     TCGA-HZ-7926     TCGA-HZ-8001     TCGA-HZ-8002 
"MBD3 WILD-TYPE" "MBD3 WILD-TYPE" "MBD3 WILD-TYPE" "MBD3 WILD-TYPE" 
    TCGA-HZ-8003     TCGA-HZ-8005     TCGA-HZ-8315     TCGA-HZ-8317 
"MBD3 WILD-TYPE"   "MBD3 MUTATED" "MBD3 WILD-TYPE" "MBD3 WILD-TYPE" 
    TCGA-HZ-8636     TCGA-HZ-8638     TCGA-HZ-A49G     TCGA-HZ-A49H 
"MBD3 WILD-TYPE" "MBD3 WILD-TYPE"   "MBD3 MUTATED" "MBD3 WILD-TYPE" 
    TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-IB-7644     TCGA-IB-7645 
  "MBD3 MUTATED" "MBD3 WILD-TYPE" "MBD3 WILD-TYPE"   "MBD3 MUTATED" 
    TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7651 
"MBD3 WILD-TYPE" "MBD3 WILD-TYPE" "MBD3 WILD-TYPE"   "MBD3 MUTATED" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887 
"MBD3 WILD-TYPE" "MBD3 WILD-TYPE" "MBD3 WILD-TYPE" "MBD3 WILD-TYPE" 
    TCGA-IB-7888     TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891 
  "MBD3 MUTATED" "MBD3 WILD-TYPE" "MBD3 WILD-TYPE" "MBD3 WILD-TYPE" 
    TCGA-IB-7893     TCGA-IB-7897     TCGA-IB-8126     TCGA-IB-8127 
  "MBD3 MUTATED" "MBD3 WILD-TYPE" "MBD3 WILD-TYPE" "MBD3 WILD-TYPE" 
    TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS 
  "MBD3 MUTATED" "MBD3 WILD-TYPE" "MBD3 WILD-TYPE" "MBD3 WILD-TYPE" 
    TCGA-IB-A5ST     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
"MBD3 WILD-TYPE" "MBD3 WILD-TYPE" "MBD3 WILD-TYPE" "MBD3 WILD-TYPE" 
    TCGA-PZ-A5RE     TCGA-Q3-A5QY     TCGA-US-A779     TCGA-US-A77E 
"MBD3 WILD-TYPE" "MBD3 WILD-TYPE" "MBD3 WILD-TYPE" "MBD3 WILD-TYPE" 
    TCGA-US-A77J 
"MBD3 WILD-TYPE" 
[1] "hr=" "1.8"
D34V2, continuous
                vv
clus             STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  MBD3 MUTATED          0        0         2        10         0        0
  MBD3 WILD-TYPE        1        4         9        41         2        3
D34V3, multiclass
                vv
clus             T1+T2 T3+T4
  MBD3 MUTATED       1    11
  MBD3 WILD-TYPE     5    55
D34V4, multiclass
       clus
vv      MBD3 MUTATED MBD3 WILD-TYPE
  T1+T2            1              5
  T3+T4           11             55
D34V5, binary
                cls
clus              0  1
  MBD3 MUTATED    2 10
  MBD3 WILD-TYPE 15 44
[1] "tbl2"
                cls
clus             [,1] [,2]
  MBD3 MUTATED      2   10
  MBD3 WILD-TYPE   15   44
   clus
vv  MBD3 MUTATED MBD3 WILD-TYPE
  0            2             15
  1           10             44
                vv
clus             M0 M1 MX
  MBD3 MUTATED    8  0  4
  MBD3 WILD-TYPE 31  3 26
D34V6, multiclass
    clus
vv   MBD3 MUTATED MBD3 WILD-TYPE
  M0            8             31
  M1            0              3
  MX            4             26
D34V7, binary
                cls
clus              0  1
  MBD3 MUTATED    7  5
  MBD3 WILD-TYPE 29 31
[1] "tbl2"
                cls
clus             [,1] [,2]
  MBD3 MUTATED      7    5
  MBD3 WILD-TYPE   29   31
        clus
vv       MBD3 MUTATED MBD3 WILD-TYPE
  FEMALE            7             29
  MALE              5             31
                vv
clus             PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  MBD3 MUTATED                                    12
  MBD3 WILD-TYPE                                  53
                vv
clus             PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  MBD3 MUTATED                                       0
  MBD3 WILD-TYPE                                     4
                vv
clus             PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  MBD3 MUTATED                                                  0
  MBD3 WILD-TYPE                                                2
D34V8, multiclass
                                                  clus
vv                                                 MBD3 MUTATED MBD3 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                        12             53
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                       0              4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA            0              2
D34V9, continuous
[1] "Remove cluster labels:" "MBD3 MUTATED"          
clus
  MBD3 MUTATED MBD3 WILD-TYPE 
             1             21 
    TCGA-F2-6880     TCGA-FB-A4P5     TCGA-FB-A4P6     TCGA-FB-A5VM 
"MBD3 WILD-TYPE" "MBD3 WILD-TYPE" "MBD3 WILD-TYPE" "MBD3 WILD-TYPE" 
    TCGA-FB-A78T     TCGA-FB-A7DR     TCGA-H6-8124     TCGA-H6-A45N 
"MBD3 WILD-TYPE" "MBD3 WILD-TYPE" "MBD3 WILD-TYPE" "MBD3 WILD-TYPE" 
    TCGA-H8-A6C1     TCGA-IB-7644     TCGA-IB-7649     TCGA-IB-7885 
"MBD3 WILD-TYPE" "MBD3 WILD-TYPE" "MBD3 WILD-TYPE" "MBD3 WILD-TYPE" 
    TCGA-IB-7886     TCGA-IB-7887     TCGA-IB-7891     TCGA-IB-8126 
"MBD3 WILD-TYPE" "MBD3 WILD-TYPE" "MBD3 WILD-TYPE" "MBD3 WILD-TYPE" 
    TCGA-IB-8127     TCGA-IB-A5SS     TCGA-IB-A6UG     TCGA-LB-A7SX 
"MBD3 WILD-TYPE" "MBD3 WILD-TYPE" "MBD3 WILD-TYPE" "MBD3 WILD-TYPE" 
    TCGA-OE-A75W 
"MBD3 WILD-TYPE" 
D34V10, continuous
[1] "Remove cluster labels:" "MBD3 MUTATED"          
clus
  MBD3 MUTATED MBD3 WILD-TYPE 
             1             18 
    TCGA-FB-A4P5     TCGA-FB-A4P6     TCGA-FB-A5VM     TCGA-FB-A78T 
"MBD3 WILD-TYPE" "MBD3 WILD-TYPE" "MBD3 WILD-TYPE" "MBD3 WILD-TYPE" 
    TCGA-FB-A7DR     TCGA-H6-8124     TCGA-H8-A6C1     TCGA-IB-7644 
"MBD3 WILD-TYPE" "MBD3 WILD-TYPE" "MBD3 WILD-TYPE" "MBD3 WILD-TYPE" 
    TCGA-IB-7649     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7891 
"MBD3 WILD-TYPE" "MBD3 WILD-TYPE" "MBD3 WILD-TYPE" "MBD3 WILD-TYPE" 
    TCGA-IB-8126     TCGA-IB-8127     TCGA-IB-A5SS     TCGA-IB-A6UG 
"MBD3 WILD-TYPE" "MBD3 WILD-TYPE" "MBD3 WILD-TYPE" "MBD3 WILD-TYPE" 
    TCGA-LB-A7SX     TCGA-OE-A75W 
"MBD3 WILD-TYPE" "MBD3 WILD-TYPE" 
                vv
clus             R0 R1 RX
  MBD3 MUTATED    6  5  0
  MBD3 WILD-TYPE 36 19  2
D34V11, multiclass
    clus
vv   MBD3 MUTATED MBD3 WILD-TYPE
  R0            6             36
  R1            5             19
  RX            0              2
D34V12, continuous

Clustering(35) Variable = ZNF644 MUTATION ANALYSIS
D35V1, survival
                  sevent
clus2               0  1
  ZNF644 MUTATED    5  1
  ZNF644 WILD-TYPE 35 28
  ZNF644 MUTATED ZNF644 WILD-TYPE 
               6               63 
  ZNF644 MUTATED ZNF644 WILD-TYPE 
               1               28 
$`ZNF644 MUTATED`
TCGA-F2-6880 TCGA-FB-A545 TCGA-H6-8124 TCGA-HZ-8003 TCGA-HZ-A49G TCGA-IB-7651 
        9.70        12.66        12.89         0.69         0.76        19.82 

$`ZNF644 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H TCGA-FB-A4P5 
       10.98        11.84         7.10         5.03        19.27         0.13 
TCGA-FB-A4P6 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR TCGA-FZ-5920 TCGA-FZ-5922 
       11.93         2.47         0.03         5.46         2.01        36.20 
TCGA-FZ-5923 TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-7919 
       20.81         7.66        13.02         7.89         0.92         0.66 
TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8001 
        0.13         0.26        12.13        11.87         0.26         0.62 
TCGA-HZ-8002 TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8636 TCGA-HZ-8638 
        0.79         3.95         0.92         0.53         0.16         2.99 
TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7646 
        0.95         6.38         1.51        11.41        49.38         4.77 
TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 
       21.90        15.35        15.65        27.98         4.04         3.62 
TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-7897 
       43.79        15.81        19.66        16.04         3.85        15.98 
TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS 
        0.56        17.16        10.82         9.86         7.20        15.12 
TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W TCGA-PZ-A5RE TCGA-Q3-A5QY 
        0.26         1.35         4.18         3.62         8.12        13.68 
TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
       16.80        14.14        18.67 

  ZNF644 MUTATED ZNF644 WILD-TYPE 
            0.69             0.03 
  ZNF644 MUTATED ZNF644 WILD-TYPE 
           19.82            49.38 
  ZNF644 MUTATED ZNF644 WILD-TYPE 
           11.18             7.20 
[1] "0.7 - 19.8 (11.2)" "0.0 - 49.4 (7.2)" 
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
"ZNF644 WILD-TYPE"   "ZNF644 MUTATED" "ZNF644 WILD-TYPE" "ZNF644 WILD-TYPE" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"ZNF644 WILD-TYPE" "ZNF644 WILD-TYPE" "ZNF644 WILD-TYPE" "ZNF644 WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
  "ZNF644 MUTATED" "ZNF644 WILD-TYPE" "ZNF644 WILD-TYPE" "ZNF644 WILD-TYPE" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"ZNF644 WILD-TYPE" "ZNF644 WILD-TYPE" "ZNF644 WILD-TYPE"   "ZNF644 MUTATED" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
"ZNF644 WILD-TYPE" "ZNF644 WILD-TYPE" "ZNF644 WILD-TYPE" "ZNF644 WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
"ZNF644 WILD-TYPE" "ZNF644 WILD-TYPE" "ZNF644 WILD-TYPE" "ZNF644 WILD-TYPE" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"ZNF644 WILD-TYPE" "ZNF644 WILD-TYPE" "ZNF644 WILD-TYPE" "ZNF644 WILD-TYPE" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
  "ZNF644 MUTATED" "ZNF644 WILD-TYPE" "ZNF644 WILD-TYPE" "ZNF644 WILD-TYPE" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
"ZNF644 WILD-TYPE" "ZNF644 WILD-TYPE"   "ZNF644 MUTATED" "ZNF644 WILD-TYPE" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
"ZNF644 WILD-TYPE" "ZNF644 WILD-TYPE" "ZNF644 WILD-TYPE" "ZNF644 WILD-TYPE" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
"ZNF644 WILD-TYPE" "ZNF644 WILD-TYPE" "ZNF644 WILD-TYPE"   "ZNF644 MUTATED" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
"ZNF644 WILD-TYPE" "ZNF644 WILD-TYPE" "ZNF644 WILD-TYPE" "ZNF644 WILD-TYPE" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
"ZNF644 WILD-TYPE" "ZNF644 WILD-TYPE" "ZNF644 WILD-TYPE" "ZNF644 WILD-TYPE" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
"ZNF644 WILD-TYPE" "ZNF644 WILD-TYPE" "ZNF644 WILD-TYPE" "ZNF644 WILD-TYPE" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"ZNF644 WILD-TYPE" "ZNF644 WILD-TYPE" "ZNF644 WILD-TYPE" "ZNF644 WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"ZNF644 WILD-TYPE" "ZNF644 WILD-TYPE" "ZNF644 WILD-TYPE" "ZNF644 WILD-TYPE" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
"ZNF644 WILD-TYPE" "ZNF644 WILD-TYPE" "ZNF644 WILD-TYPE" "ZNF644 WILD-TYPE" 
      TCGA-US-A77J 
"ZNF644 WILD-TYPE" 
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
"ZNF644 WILD-TYPE"   "ZNF644 MUTATED" "ZNF644 WILD-TYPE" "ZNF644 WILD-TYPE" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"ZNF644 WILD-TYPE" "ZNF644 WILD-TYPE" "ZNF644 WILD-TYPE" "ZNF644 WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
  "ZNF644 MUTATED" "ZNF644 WILD-TYPE" "ZNF644 WILD-TYPE" "ZNF644 WILD-TYPE" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"ZNF644 WILD-TYPE" "ZNF644 WILD-TYPE" "ZNF644 WILD-TYPE"   "ZNF644 MUTATED" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
"ZNF644 WILD-TYPE" "ZNF644 WILD-TYPE" "ZNF644 WILD-TYPE" "ZNF644 WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
"ZNF644 WILD-TYPE" "ZNF644 WILD-TYPE" "ZNF644 WILD-TYPE" "ZNF644 WILD-TYPE" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"ZNF644 WILD-TYPE" "ZNF644 WILD-TYPE" "ZNF644 WILD-TYPE" "ZNF644 WILD-TYPE" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
  "ZNF644 MUTATED" "ZNF644 WILD-TYPE" "ZNF644 WILD-TYPE" "ZNF644 WILD-TYPE" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
"ZNF644 WILD-TYPE" "ZNF644 WILD-TYPE"   "ZNF644 MUTATED" "ZNF644 WILD-TYPE" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
"ZNF644 WILD-TYPE" "ZNF644 WILD-TYPE" "ZNF644 WILD-TYPE" "ZNF644 WILD-TYPE" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
"ZNF644 WILD-TYPE" "ZNF644 WILD-TYPE" "ZNF644 WILD-TYPE"   "ZNF644 MUTATED" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
"ZNF644 WILD-TYPE" "ZNF644 WILD-TYPE" "ZNF644 WILD-TYPE" "ZNF644 WILD-TYPE" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
"ZNF644 WILD-TYPE" "ZNF644 WILD-TYPE" "ZNF644 WILD-TYPE" "ZNF644 WILD-TYPE" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
"ZNF644 WILD-TYPE" "ZNF644 WILD-TYPE" "ZNF644 WILD-TYPE" "ZNF644 WILD-TYPE" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"ZNF644 WILD-TYPE" "ZNF644 WILD-TYPE" "ZNF644 WILD-TYPE" "ZNF644 WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"ZNF644 WILD-TYPE" "ZNF644 WILD-TYPE" "ZNF644 WILD-TYPE" "ZNF644 WILD-TYPE" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
"ZNF644 WILD-TYPE" "ZNF644 WILD-TYPE" "ZNF644 WILD-TYPE" "ZNF644 WILD-TYPE" 
      TCGA-US-A77J 
"ZNF644 WILD-TYPE" 
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
"ZNF644 WILD-TYPE"   "ZNF644 MUTATED" "ZNF644 WILD-TYPE" "ZNF644 WILD-TYPE" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"ZNF644 WILD-TYPE" "ZNF644 WILD-TYPE" "ZNF644 WILD-TYPE" "ZNF644 WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
  "ZNF644 MUTATED" "ZNF644 WILD-TYPE" "ZNF644 WILD-TYPE" "ZNF644 WILD-TYPE" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"ZNF644 WILD-TYPE" "ZNF644 WILD-TYPE" "ZNF644 WILD-TYPE"   "ZNF644 MUTATED" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
"ZNF644 WILD-TYPE" "ZNF644 WILD-TYPE" "ZNF644 WILD-TYPE" "ZNF644 WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
"ZNF644 WILD-TYPE" "ZNF644 WILD-TYPE" "ZNF644 WILD-TYPE" "ZNF644 WILD-TYPE" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"ZNF644 WILD-TYPE" "ZNF644 WILD-TYPE" "ZNF644 WILD-TYPE" "ZNF644 WILD-TYPE" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
  "ZNF644 MUTATED" "ZNF644 WILD-TYPE" "ZNF644 WILD-TYPE" "ZNF644 WILD-TYPE" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
"ZNF644 WILD-TYPE" "ZNF644 WILD-TYPE"   "ZNF644 MUTATED" "ZNF644 WILD-TYPE" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
"ZNF644 WILD-TYPE" "ZNF644 WILD-TYPE" "ZNF644 WILD-TYPE" "ZNF644 WILD-TYPE" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
"ZNF644 WILD-TYPE" "ZNF644 WILD-TYPE" "ZNF644 WILD-TYPE"   "ZNF644 MUTATED" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
"ZNF644 WILD-TYPE" "ZNF644 WILD-TYPE" "ZNF644 WILD-TYPE" "ZNF644 WILD-TYPE" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
"ZNF644 WILD-TYPE" "ZNF644 WILD-TYPE" "ZNF644 WILD-TYPE" "ZNF644 WILD-TYPE" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
"ZNF644 WILD-TYPE" "ZNF644 WILD-TYPE" "ZNF644 WILD-TYPE" "ZNF644 WILD-TYPE" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"ZNF644 WILD-TYPE" "ZNF644 WILD-TYPE" "ZNF644 WILD-TYPE" "ZNF644 WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"ZNF644 WILD-TYPE" "ZNF644 WILD-TYPE" "ZNF644 WILD-TYPE" "ZNF644 WILD-TYPE" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
"ZNF644 WILD-TYPE" "ZNF644 WILD-TYPE" "ZNF644 WILD-TYPE" "ZNF644 WILD-TYPE" 
      TCGA-US-A77J 
"ZNF644 WILD-TYPE" 
[1] "hr=" "2.3"
D35V2, continuous
                  vv
clus               STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  ZNF644 MUTATED          0        0         0         7         0        0
  ZNF644 WILD-TYPE        1        4        11        44         2        3
D35V3, multiclass
                  vv
clus               T1+T2 T3+T4
  ZNF644 MUTATED       1     6
  ZNF644 WILD-TYPE     5    60
D35V4, multiclass
       clus
vv      ZNF644 MUTATED ZNF644 WILD-TYPE
  T1+T2              1                5
  T3+T4              6               60
D35V5, binary
                  cls
clus                0  1
  ZNF644 MUTATED    0  7
  ZNF644 WILD-TYPE 17 47
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ZNF644 MUTATED      0    7
  ZNF644 WILD-TYPE   17   47
   clus
vv  ZNF644 MUTATED ZNF644 WILD-TYPE
  0              0               17
  1              7               47
                  vv
clus               M0 M1 MX
  ZNF644 MUTATED    4  0  3
  ZNF644 WILD-TYPE 35  3 27
D35V6, multiclass
    clus
vv   ZNF644 MUTATED ZNF644 WILD-TYPE
  M0              4               35
  M1              0                3
  MX              3               27
D35V7, binary
                  cls
clus                0  1
  ZNF644 MUTATED    6  1
  ZNF644 WILD-TYPE 30 35
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ZNF644 MUTATED      6    1
  ZNF644 WILD-TYPE   30   35
        clus
vv       ZNF644 MUTATED ZNF644 WILD-TYPE
  FEMALE              6               30
  MALE                1               35
                  vv
clus               PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  ZNF644 MUTATED                                     7
  ZNF644 WILD-TYPE                                  58
                  vv
clus               PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  ZNF644 MUTATED                                       0
  ZNF644 WILD-TYPE                                     4
                  vv
clus               PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  ZNF644 MUTATED                                                  0
  ZNF644 WILD-TYPE                                                2
D35V8, multiclass
                                                  clus
vv                                                 ZNF644 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                           7
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                         0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA              0
                                                  clus
vv                                                 ZNF644 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                            58
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                           4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                2
D35V9, continuous
D35V10, continuous
[1] "Remove cluster labels:" "ZNF644 MUTATED"        
clus
  ZNF644 MUTATED ZNF644 WILD-TYPE 
               2               17 
      TCGA-FB-A4P5       TCGA-FB-A4P6       TCGA-FB-A5VM       TCGA-FB-A78T 
"ZNF644 WILD-TYPE" "ZNF644 WILD-TYPE" "ZNF644 WILD-TYPE" "ZNF644 WILD-TYPE" 
      TCGA-FB-A7DR       TCGA-H8-A6C1       TCGA-IB-7644       TCGA-IB-7649 
"ZNF644 WILD-TYPE" "ZNF644 WILD-TYPE" "ZNF644 WILD-TYPE" "ZNF644 WILD-TYPE" 
      TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7891       TCGA-IB-8126 
"ZNF644 WILD-TYPE" "ZNF644 WILD-TYPE" "ZNF644 WILD-TYPE" "ZNF644 WILD-TYPE" 
      TCGA-IB-8127       TCGA-IB-A5SS       TCGA-IB-A6UG       TCGA-LB-A7SX 
"ZNF644 WILD-TYPE" "ZNF644 WILD-TYPE" "ZNF644 WILD-TYPE" "ZNF644 WILD-TYPE" 
      TCGA-OE-A75W 
"ZNF644 WILD-TYPE" 
                  vv
clus               R0 R1 RX
  ZNF644 MUTATED    5  1  0
  ZNF644 WILD-TYPE 37 23  2
D35V11, multiclass
    clus
vv   ZNF644 MUTATED ZNF644 WILD-TYPE
  R0              5               37
  R1              1               23
  RX              0                2
D35V12, continuous

Clustering(36) Variable = NAGPA MUTATION ANALYSIS
D36V1, survival
                 sevent
clus2              0  1
  NAGPA MUTATED    3  3
  NAGPA WILD-TYPE 37 26
  NAGPA MUTATED NAGPA WILD-TYPE 
              6              63 
  NAGPA MUTATED NAGPA WILD-TYPE 
              3              26 
$`NAGPA MUTATED`
TCGA-HZ-8005 TCGA-HZ-8317 TCGA-IB-7651 TCGA-IB-7887 TCGA-LB-A7SX TCGA-PZ-A5RE 
        3.95         0.53        19.82         3.62         4.18         8.12 

$`NAGPA WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P5 TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR 
        0.13        11.93        12.66         2.47         0.03         5.46 
TCGA-FZ-5920 TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 
        2.01        36.20        20.81        12.89         7.66        13.02 
TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 
        7.89         0.92         0.66         0.13         0.26        12.13 
TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8315 
       11.87         0.26         0.62         0.79         0.69         0.92 
TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK 
        0.16         2.99         0.76         0.95         6.38         1.51 
TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7652 
       11.41        49.38         4.77        21.90        15.35        15.65 
TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 
       27.98         4.04        43.79        15.81        19.66        16.04 
TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP 
        3.85        15.98         0.56        17.16        10.82         9.86 
TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-OE-A75W TCGA-Q3-A5QY 
        7.20        15.12         0.26         1.35         3.62        13.68 
TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
       16.80        14.14        18.67 

  NAGPA MUTATED NAGPA WILD-TYPE 
           0.53            0.03 
  NAGPA MUTATED NAGPA WILD-TYPE 
          19.82           49.38 
  NAGPA MUTATED NAGPA WILD-TYPE 
          4.065           7.890 
[1] "0.5 - 19.8 (4.1)" "0.0 - 49.4 (7.9)"
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"NAGPA WILD-TYPE" "NAGPA WILD-TYPE" "NAGPA WILD-TYPE" "NAGPA WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"NAGPA WILD-TYPE" "NAGPA WILD-TYPE" "NAGPA WILD-TYPE" "NAGPA WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"NAGPA WILD-TYPE" "NAGPA WILD-TYPE" "NAGPA WILD-TYPE" "NAGPA WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"NAGPA WILD-TYPE" "NAGPA WILD-TYPE" "NAGPA WILD-TYPE" "NAGPA WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"NAGPA WILD-TYPE" "NAGPA WILD-TYPE" "NAGPA WILD-TYPE" "NAGPA WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"NAGPA WILD-TYPE" "NAGPA WILD-TYPE" "NAGPA WILD-TYPE" "NAGPA WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"NAGPA WILD-TYPE" "NAGPA WILD-TYPE" "NAGPA WILD-TYPE" "NAGPA WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"NAGPA WILD-TYPE"   "NAGPA MUTATED" "NAGPA WILD-TYPE"   "NAGPA MUTATED" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"NAGPA WILD-TYPE" "NAGPA WILD-TYPE" "NAGPA WILD-TYPE" "NAGPA WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"NAGPA WILD-TYPE" "NAGPA WILD-TYPE" "NAGPA WILD-TYPE" "NAGPA WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"NAGPA WILD-TYPE" "NAGPA WILD-TYPE" "NAGPA WILD-TYPE"   "NAGPA MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"NAGPA WILD-TYPE" "NAGPA WILD-TYPE" "NAGPA WILD-TYPE"   "NAGPA MUTATED" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"NAGPA WILD-TYPE" "NAGPA WILD-TYPE" "NAGPA WILD-TYPE" "NAGPA WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"NAGPA WILD-TYPE" "NAGPA WILD-TYPE" "NAGPA WILD-TYPE" "NAGPA WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"NAGPA WILD-TYPE" "NAGPA WILD-TYPE" "NAGPA WILD-TYPE" "NAGPA WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"NAGPA WILD-TYPE" "NAGPA WILD-TYPE"   "NAGPA MUTATED" "NAGPA WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
  "NAGPA MUTATED" "NAGPA WILD-TYPE" "NAGPA WILD-TYPE" "NAGPA WILD-TYPE" 
     TCGA-US-A77J 
"NAGPA WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"NAGPA WILD-TYPE" "NAGPA WILD-TYPE" "NAGPA WILD-TYPE" "NAGPA WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"NAGPA WILD-TYPE" "NAGPA WILD-TYPE" "NAGPA WILD-TYPE" "NAGPA WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"NAGPA WILD-TYPE" "NAGPA WILD-TYPE" "NAGPA WILD-TYPE" "NAGPA WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"NAGPA WILD-TYPE" "NAGPA WILD-TYPE" "NAGPA WILD-TYPE" "NAGPA WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"NAGPA WILD-TYPE" "NAGPA WILD-TYPE" "NAGPA WILD-TYPE" "NAGPA WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"NAGPA WILD-TYPE" "NAGPA WILD-TYPE" "NAGPA WILD-TYPE" "NAGPA WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"NAGPA WILD-TYPE" "NAGPA WILD-TYPE" "NAGPA WILD-TYPE" "NAGPA WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"NAGPA WILD-TYPE"   "NAGPA MUTATED" "NAGPA WILD-TYPE"   "NAGPA MUTATED" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"NAGPA WILD-TYPE" "NAGPA WILD-TYPE" "NAGPA WILD-TYPE" "NAGPA WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"NAGPA WILD-TYPE" "NAGPA WILD-TYPE" "NAGPA WILD-TYPE" "NAGPA WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"NAGPA WILD-TYPE" "NAGPA WILD-TYPE" "NAGPA WILD-TYPE"   "NAGPA MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"NAGPA WILD-TYPE" "NAGPA WILD-TYPE" "NAGPA WILD-TYPE"   "NAGPA MUTATED" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"NAGPA WILD-TYPE" "NAGPA WILD-TYPE" "NAGPA WILD-TYPE" "NAGPA WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"NAGPA WILD-TYPE" "NAGPA WILD-TYPE" "NAGPA WILD-TYPE" "NAGPA WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"NAGPA WILD-TYPE" "NAGPA WILD-TYPE" "NAGPA WILD-TYPE" "NAGPA WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"NAGPA WILD-TYPE" "NAGPA WILD-TYPE"   "NAGPA MUTATED" "NAGPA WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
  "NAGPA MUTATED" "NAGPA WILD-TYPE" "NAGPA WILD-TYPE" "NAGPA WILD-TYPE" 
     TCGA-US-A77J 
"NAGPA WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"NAGPA WILD-TYPE" "NAGPA WILD-TYPE" "NAGPA WILD-TYPE" "NAGPA WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"NAGPA WILD-TYPE" "NAGPA WILD-TYPE" "NAGPA WILD-TYPE" "NAGPA WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"NAGPA WILD-TYPE" "NAGPA WILD-TYPE" "NAGPA WILD-TYPE" "NAGPA WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"NAGPA WILD-TYPE" "NAGPA WILD-TYPE" "NAGPA WILD-TYPE" "NAGPA WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"NAGPA WILD-TYPE" "NAGPA WILD-TYPE" "NAGPA WILD-TYPE" "NAGPA WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"NAGPA WILD-TYPE" "NAGPA WILD-TYPE" "NAGPA WILD-TYPE" "NAGPA WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"NAGPA WILD-TYPE" "NAGPA WILD-TYPE" "NAGPA WILD-TYPE" "NAGPA WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"NAGPA WILD-TYPE"   "NAGPA MUTATED" "NAGPA WILD-TYPE"   "NAGPA MUTATED" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"NAGPA WILD-TYPE" "NAGPA WILD-TYPE" "NAGPA WILD-TYPE" "NAGPA WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"NAGPA WILD-TYPE" "NAGPA WILD-TYPE" "NAGPA WILD-TYPE" "NAGPA WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"NAGPA WILD-TYPE" "NAGPA WILD-TYPE" "NAGPA WILD-TYPE"   "NAGPA MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"NAGPA WILD-TYPE" "NAGPA WILD-TYPE" "NAGPA WILD-TYPE"   "NAGPA MUTATED" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"NAGPA WILD-TYPE" "NAGPA WILD-TYPE" "NAGPA WILD-TYPE" "NAGPA WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"NAGPA WILD-TYPE" "NAGPA WILD-TYPE" "NAGPA WILD-TYPE" "NAGPA WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"NAGPA WILD-TYPE" "NAGPA WILD-TYPE" "NAGPA WILD-TYPE" "NAGPA WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"NAGPA WILD-TYPE" "NAGPA WILD-TYPE"   "NAGPA MUTATED" "NAGPA WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
  "NAGPA MUTATED" "NAGPA WILD-TYPE" "NAGPA WILD-TYPE" "NAGPA WILD-TYPE" 
     TCGA-US-A77J 
"NAGPA WILD-TYPE" 
[1] "hr=" "1.8"
D36V2, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  NAGPA MUTATED          0        0         0         6         0        0
  NAGPA WILD-TYPE        1        4        11        45         2        3
D36V3, multiclass
                 vv
clus              T1+T2 T3+T4
  NAGPA MUTATED       0     6
  NAGPA WILD-TYPE     6    60
D36V4, multiclass
       clus
vv      NAGPA MUTATED NAGPA WILD-TYPE
  T1+T2             0               6
  T3+T4             6              60
D36V5, binary
                 cls
clus               0  1
  NAGPA MUTATED    0  6
  NAGPA WILD-TYPE 17 48
[1] "tbl2"
                 cls
clus              [,1] [,2]
  NAGPA MUTATED      0    6
  NAGPA WILD-TYPE   17   48
   clus
vv  NAGPA MUTATED NAGPA WILD-TYPE
  0             0              17
  1             6              48
                 vv
clus              M0 M1 MX
  NAGPA MUTATED    2  0  4
  NAGPA WILD-TYPE 37  3 26
D36V6, multiclass
    clus
vv   NAGPA MUTATED NAGPA WILD-TYPE
  M0             2              37
  M1             0               3
  MX             4              26
D36V7, binary
                 cls
clus               0  1
  NAGPA MUTATED    5  1
  NAGPA WILD-TYPE 31 35
[1] "tbl2"
                 cls
clus              [,1] [,2]
  NAGPA MUTATED      5    1
  NAGPA WILD-TYPE   31   35
        clus
vv       NAGPA MUTATED NAGPA WILD-TYPE
  FEMALE             5              31
  MALE               1              35
                 vv
clus              PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  NAGPA MUTATED                                     6
  NAGPA WILD-TYPE                                  59
                 vv
clus              PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  NAGPA MUTATED                                       0
  NAGPA WILD-TYPE                                     4
                 vv
clus              PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  NAGPA MUTATED                                                  0
  NAGPA WILD-TYPE                                                2
D36V8, multiclass
                                                  clus
vv                                                 NAGPA MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                          6
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                        0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA             0
                                                  clus
vv                                                 NAGPA WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                           59
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                          4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA               2
D36V9, continuous
D36V10, continuous
[1] "Remove cluster labels:" "NAGPA MUTATED"         
clus
  NAGPA MUTATED NAGPA WILD-TYPE 
              2              17 
     TCGA-FB-A4P5      TCGA-FB-A4P6      TCGA-FB-A5VM      TCGA-FB-A78T 
"NAGPA WILD-TYPE" "NAGPA WILD-TYPE" "NAGPA WILD-TYPE" "NAGPA WILD-TYPE" 
     TCGA-FB-A7DR      TCGA-H6-8124      TCGA-H8-A6C1      TCGA-IB-7644 
"NAGPA WILD-TYPE" "NAGPA WILD-TYPE" "NAGPA WILD-TYPE" "NAGPA WILD-TYPE" 
     TCGA-IB-7649      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7891 
"NAGPA WILD-TYPE" "NAGPA WILD-TYPE" "NAGPA WILD-TYPE" "NAGPA WILD-TYPE" 
     TCGA-IB-8126      TCGA-IB-8127      TCGA-IB-A5SS      TCGA-IB-A6UG 
"NAGPA WILD-TYPE" "NAGPA WILD-TYPE" "NAGPA WILD-TYPE" "NAGPA WILD-TYPE" 
     TCGA-OE-A75W 
"NAGPA WILD-TYPE" 
                 vv
clus              R0 R1 RX
  NAGPA MUTATED    1  4  0
  NAGPA WILD-TYPE 41 20  2
D36V11, multiclass
    clus
vv   NAGPA MUTATED NAGPA WILD-TYPE
  R0             1              41
  R1             4              20
  RX             0               2
D36V12, continuous

Clustering(37) Variable = WWTR1 MUTATION ANALYSIS
D37V1, survival
                 sevent
clus2              0  1
  WWTR1 MUTATED    6  4
  WWTR1 WILD-TYPE 34 25
  WWTR1 MUTATED WWTR1 WILD-TYPE 
             10              59 
  WWTR1 MUTATED WWTR1 WILD-TYPE 
              4              25 
$`WWTR1 MUTATED`
TCGA-FB-A545 TCGA-HZ-7919 TCGA-HZ-8001 TCGA-HZ-8003 TCGA-HZ-8636 TCGA-HZ-A49H 
       12.66         0.66         0.62         0.69         0.16         0.95 
TCGA-IB-7649 TCGA-IB-7651 TCGA-IB-7887 TCGA-IB-7897 
       15.35        19.82         3.62        15.98 

$`WWTR1 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P5 TCGA-FB-A4P6 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR TCGA-FZ-5920 
        0.13        11.93         2.47         0.03         5.46         2.01 
TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7289 
       36.20        20.81        12.89         7.66        13.02         7.89 
TCGA-HZ-7918 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 
        0.92         0.13         0.26        12.13        11.87         0.26 
TCGA-HZ-8002 TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8638 TCGA-HZ-A49G 
        0.79         3.95         0.92         0.53         2.99         0.76 
TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 
        6.38         1.51        11.41        49.38         4.77        21.90 
TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 
       15.65        27.98         4.04        43.79        15.81        19.66 
TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP 
       16.04         3.85         0.56        17.16        10.82         9.86 
TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W 
        7.20        15.12         0.26         1.35         4.18         3.62 
TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
        8.12        13.68        16.80        14.14        18.67 

  WWTR1 MUTATED WWTR1 WILD-TYPE 
           0.16            0.03 
  WWTR1 MUTATED WWTR1 WILD-TYPE 
          19.82           49.38 
  WWTR1 MUTATED WWTR1 WILD-TYPE 
          2.285           7.890 
[1] "0.2 - 19.8 (2.3)" "0.0 - 49.4 (7.9)"
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
  "WWTR1 MUTATED" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
  "WWTR1 MUTATED" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE"   "WWTR1 MUTATED" "WWTR1 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
  "WWTR1 MUTATED" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
  "WWTR1 MUTATED" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE"   "WWTR1 MUTATED" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE"   "WWTR1 MUTATED"   "WWTR1 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE"   "WWTR1 MUTATED" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"WWTR1 WILD-TYPE"   "WWTR1 MUTATED" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" 
     TCGA-US-A77J 
"WWTR1 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
  "WWTR1 MUTATED" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
  "WWTR1 MUTATED" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE"   "WWTR1 MUTATED" "WWTR1 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
  "WWTR1 MUTATED" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
  "WWTR1 MUTATED" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE"   "WWTR1 MUTATED" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE"   "WWTR1 MUTATED"   "WWTR1 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE"   "WWTR1 MUTATED" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"WWTR1 WILD-TYPE"   "WWTR1 MUTATED" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" 
     TCGA-US-A77J 
"WWTR1 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
  "WWTR1 MUTATED" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
  "WWTR1 MUTATED" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE"   "WWTR1 MUTATED" "WWTR1 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
  "WWTR1 MUTATED" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
  "WWTR1 MUTATED" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE"   "WWTR1 MUTATED" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE"   "WWTR1 MUTATED"   "WWTR1 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE"   "WWTR1 MUTATED" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"WWTR1 WILD-TYPE"   "WWTR1 MUTATED" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" 
     TCGA-US-A77J 
"WWTR1 WILD-TYPE" 
[1] "hr=" "1.5"
D37V2, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  WWTR1 MUTATED          0        0         0         8         1        1
  WWTR1 WILD-TYPE        1        4        11        43         1        2
D37V3, multiclass
                 vv
clus              T1+T2 T3+T4
  WWTR1 MUTATED       0    10
  WWTR1 WILD-TYPE     6    56
D37V4, multiclass
       clus
vv      WWTR1 MUTATED WWTR1 WILD-TYPE
  T1+T2             0               6
  T3+T4            10              56
D37V5, binary
                 cls
clus               0  1
  WWTR1 MUTATED    2  8
  WWTR1 WILD-TYPE 15 46
[1] "tbl2"
                 cls
clus              [,1] [,2]
  WWTR1 MUTATED      2    8
  WWTR1 WILD-TYPE   15   46
   clus
vv  WWTR1 MUTATED WWTR1 WILD-TYPE
  0             2              15
  1             8              46
                 vv
clus              M0 M1 MX
  WWTR1 MUTATED    6  1  3
  WWTR1 WILD-TYPE 33  2 27
D37V6, multiclass
    clus
vv   WWTR1 MUTATED WWTR1 WILD-TYPE
  M0             6              33
  M1             1               2
  MX             3              27
D37V7, binary
                 cls
clus               0  1
  WWTR1 MUTATED    9  1
  WWTR1 WILD-TYPE 27 35
[1] "tbl2"
                 cls
clus              [,1] [,2]
  WWTR1 MUTATED      9    1
  WWTR1 WILD-TYPE   27   35
        clus
vv       WWTR1 MUTATED WWTR1 WILD-TYPE
  FEMALE             9              27
  MALE               1              35
                 vv
clus              PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  WWTR1 MUTATED                                    10
  WWTR1 WILD-TYPE                                  55
                 vv
clus              PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  WWTR1 MUTATED                                       0
  WWTR1 WILD-TYPE                                     4
                 vv
clus              PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  WWTR1 MUTATED                                                  0
  WWTR1 WILD-TYPE                                                2
D37V8, multiclass
                                                  clus
vv                                                 WWTR1 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                         10
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                        0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA             0
                                                  clus
vv                                                 WWTR1 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                           55
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                          4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA               2
D37V9, continuous
D37V10, continuous
[1] "Remove cluster labels:" "WWTR1 MUTATED"         
clus
  WWTR1 MUTATED WWTR1 WILD-TYPE 
              2              17 
     TCGA-FB-A4P5      TCGA-FB-A4P6      TCGA-FB-A5VM      TCGA-FB-A78T 
"WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" 
     TCGA-FB-A7DR      TCGA-H6-8124      TCGA-H8-A6C1      TCGA-IB-7644 
"WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" 
     TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7891      TCGA-IB-8126 
"WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" 
     TCGA-IB-8127      TCGA-IB-A5SS      TCGA-IB-A6UG      TCGA-LB-A7SX 
"WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" "WWTR1 WILD-TYPE" 
     TCGA-OE-A75W 
"WWTR1 WILD-TYPE" 
                 vv
clus              R0 R1 RX
  WWTR1 MUTATED    5  4  0
  WWTR1 WILD-TYPE 37 20  2
D37V11, multiclass
    clus
vv   WWTR1 MUTATED WWTR1 WILD-TYPE
  R0             5              37
  R1             4              20
  RX             0               2
D37V12, continuous

Clustering(38) Variable = B4GALT2 MUTATION ANALYSIS
D38V1, survival
                   sevent
clus2                0  1
  B4GALT2 MUTATED    5  2
  B4GALT2 WILD-TYPE 35 27
  B4GALT2 MUTATED B4GALT2 WILD-TYPE 
                7                62 
  B4GALT2 MUTATED B4GALT2 WILD-TYPE 
                2                27 
$`B4GALT2 MUTATED`
TCGA-F2-A44G TCGA-HZ-8315 TCGA-HZ-8636 TCGA-IB-7652 TCGA-IB-7891 TCGA-PZ-A5RE 
        5.03         0.92         0.16        15.65        16.04         8.12 
TCGA-US-A779 
       16.80 

$`B4GALT2 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44H TCGA-FB-A4P5 
       10.98         9.70        11.84         7.10        19.27         0.13 
TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR TCGA-FZ-5920 
       11.93        12.66         2.47         0.03         5.46         2.01 
TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7289 
       36.20        20.81        12.89         7.66        13.02         7.89 
TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 
        0.92         0.66         0.13         0.26        12.13        11.87 
TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8317 
        0.26         0.62         0.79         0.69         3.95         0.53 
TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 
        2.99         0.76         0.95         6.38         1.51        11.41 
TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7651 TCGA-IB-7885 
       49.38         4.77        21.90        15.35        19.82        27.98 
TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7893 
        4.04         3.62        43.79        15.81        19.66         3.85 
TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ 
       15.98         0.56        17.16        10.82         9.86         7.20 
TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W TCGA-Q3-A5QY 
       15.12         0.26         1.35         4.18         3.62        13.68 
TCGA-US-A77E TCGA-US-A77J 
       14.14        18.67 

  B4GALT2 MUTATED B4GALT2 WILD-TYPE 
             0.16              0.03 
  B4GALT2 MUTATED B4GALT2 WILD-TYPE 
            16.80             49.38 
  B4GALT2 MUTATED B4GALT2 WILD-TYPE 
             8.12              7.43 
[1] "0.2 - 16.8 (8.1)" "0.0 - 49.4 (7.4)"
       TCGA-F2-6879        TCGA-F2-6880        TCGA-F2-7273        TCGA-F2-7276 
"B4GALT2 WILD-TYPE" "B4GALT2 WILD-TYPE" "B4GALT2 WILD-TYPE" "B4GALT2 WILD-TYPE" 
       TCGA-F2-A44G        TCGA-F2-A44H        TCGA-FB-A4P5        TCGA-FB-A4P6 
  "B4GALT2 MUTATED" "B4GALT2 WILD-TYPE" "B4GALT2 WILD-TYPE" "B4GALT2 WILD-TYPE" 
       TCGA-FB-A545        TCGA-FB-A5VM        TCGA-FB-A78T        TCGA-FB-A7DR 
"B4GALT2 WILD-TYPE" "B4GALT2 WILD-TYPE" "B4GALT2 WILD-TYPE" "B4GALT2 WILD-TYPE" 
       TCGA-FZ-5920        TCGA-FZ-5922        TCGA-FZ-5923        TCGA-H6-8124 
"B4GALT2 WILD-TYPE" "B4GALT2 WILD-TYPE" "B4GALT2 WILD-TYPE" "B4GALT2 WILD-TYPE" 
       TCGA-H6-A45N        TCGA-H8-A6C1        TCGA-HZ-7289        TCGA-HZ-7918 
"B4GALT2 WILD-TYPE" "B4GALT2 WILD-TYPE" "B4GALT2 WILD-TYPE" "B4GALT2 WILD-TYPE" 
       TCGA-HZ-7919        TCGA-HZ-7922        TCGA-HZ-7923        TCGA-HZ-7924 
"B4GALT2 WILD-TYPE" "B4GALT2 WILD-TYPE" "B4GALT2 WILD-TYPE" "B4GALT2 WILD-TYPE" 
       TCGA-HZ-7925        TCGA-HZ-7926        TCGA-HZ-8001        TCGA-HZ-8002 
"B4GALT2 WILD-TYPE" "B4GALT2 WILD-TYPE" "B4GALT2 WILD-TYPE" "B4GALT2 WILD-TYPE" 
       TCGA-HZ-8003        TCGA-HZ-8005        TCGA-HZ-8315        TCGA-HZ-8317 
"B4GALT2 WILD-TYPE" "B4GALT2 WILD-TYPE"   "B4GALT2 MUTATED" "B4GALT2 WILD-TYPE" 
       TCGA-HZ-8636        TCGA-HZ-8638        TCGA-HZ-A49G        TCGA-HZ-A49H 
  "B4GALT2 MUTATED" "B4GALT2 WILD-TYPE" "B4GALT2 WILD-TYPE" "B4GALT2 WILD-TYPE" 
       TCGA-HZ-A4BH        TCGA-HZ-A4BK        TCGA-IB-7644        TCGA-IB-7645 
"B4GALT2 WILD-TYPE" "B4GALT2 WILD-TYPE" "B4GALT2 WILD-TYPE" "B4GALT2 WILD-TYPE" 
       TCGA-IB-7646        TCGA-IB-7647        TCGA-IB-7649        TCGA-IB-7651 
"B4GALT2 WILD-TYPE" "B4GALT2 WILD-TYPE" "B4GALT2 WILD-TYPE" "B4GALT2 WILD-TYPE" 
       TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-7886        TCGA-IB-7887 
  "B4GALT2 MUTATED" "B4GALT2 WILD-TYPE" "B4GALT2 WILD-TYPE" "B4GALT2 WILD-TYPE" 
       TCGA-IB-7888        TCGA-IB-7889        TCGA-IB-7890        TCGA-IB-7891 
"B4GALT2 WILD-TYPE" "B4GALT2 WILD-TYPE" "B4GALT2 WILD-TYPE"   "B4GALT2 MUTATED" 
       TCGA-IB-7893        TCGA-IB-7897        TCGA-IB-8126        TCGA-IB-8127 
"B4GALT2 WILD-TYPE" "B4GALT2 WILD-TYPE" "B4GALT2 WILD-TYPE" "B4GALT2 WILD-TYPE" 
       TCGA-IB-A5SO        TCGA-IB-A5SP        TCGA-IB-A5SQ        TCGA-IB-A5SS 
"B4GALT2 WILD-TYPE" "B4GALT2 WILD-TYPE" "B4GALT2 WILD-TYPE" "B4GALT2 WILD-TYPE" 
       TCGA-IB-A5ST        TCGA-IB-A6UG        TCGA-LB-A7SX        TCGA-OE-A75W 
"B4GALT2 WILD-TYPE" "B4GALT2 WILD-TYPE" "B4GALT2 WILD-TYPE" "B4GALT2 WILD-TYPE" 
       TCGA-PZ-A5RE        TCGA-Q3-A5QY        TCGA-US-A779        TCGA-US-A77E 
  "B4GALT2 MUTATED" "B4GALT2 WILD-TYPE"   "B4GALT2 MUTATED" "B4GALT2 WILD-TYPE" 
       TCGA-US-A77J 
"B4GALT2 WILD-TYPE" 
       TCGA-F2-6879        TCGA-F2-6880        TCGA-F2-7273        TCGA-F2-7276 
"B4GALT2 WILD-TYPE" "B4GALT2 WILD-TYPE" "B4GALT2 WILD-TYPE" "B4GALT2 WILD-TYPE" 
       TCGA-F2-A44G        TCGA-F2-A44H        TCGA-FB-A4P5        TCGA-FB-A4P6 
  "B4GALT2 MUTATED" "B4GALT2 WILD-TYPE" "B4GALT2 WILD-TYPE" "B4GALT2 WILD-TYPE" 
       TCGA-FB-A545        TCGA-FB-A5VM        TCGA-FB-A78T        TCGA-FB-A7DR 
"B4GALT2 WILD-TYPE" "B4GALT2 WILD-TYPE" "B4GALT2 WILD-TYPE" "B4GALT2 WILD-TYPE" 
       TCGA-FZ-5920        TCGA-FZ-5922        TCGA-FZ-5923        TCGA-H6-8124 
"B4GALT2 WILD-TYPE" "B4GALT2 WILD-TYPE" "B4GALT2 WILD-TYPE" "B4GALT2 WILD-TYPE" 
       TCGA-H6-A45N        TCGA-H8-A6C1        TCGA-HZ-7289        TCGA-HZ-7918 
"B4GALT2 WILD-TYPE" "B4GALT2 WILD-TYPE" "B4GALT2 WILD-TYPE" "B4GALT2 WILD-TYPE" 
       TCGA-HZ-7919        TCGA-HZ-7922        TCGA-HZ-7923        TCGA-HZ-7924 
"B4GALT2 WILD-TYPE" "B4GALT2 WILD-TYPE" "B4GALT2 WILD-TYPE" "B4GALT2 WILD-TYPE" 
       TCGA-HZ-7925        TCGA-HZ-7926        TCGA-HZ-8001        TCGA-HZ-8002 
"B4GALT2 WILD-TYPE" "B4GALT2 WILD-TYPE" "B4GALT2 WILD-TYPE" "B4GALT2 WILD-TYPE" 
       TCGA-HZ-8003        TCGA-HZ-8005        TCGA-HZ-8315        TCGA-HZ-8317 
"B4GALT2 WILD-TYPE" "B4GALT2 WILD-TYPE"   "B4GALT2 MUTATED" "B4GALT2 WILD-TYPE" 
       TCGA-HZ-8636        TCGA-HZ-8638        TCGA-HZ-A49G        TCGA-HZ-A49H 
  "B4GALT2 MUTATED" "B4GALT2 WILD-TYPE" "B4GALT2 WILD-TYPE" "B4GALT2 WILD-TYPE" 
       TCGA-HZ-A4BH        TCGA-HZ-A4BK        TCGA-IB-7644        TCGA-IB-7645 
"B4GALT2 WILD-TYPE" "B4GALT2 WILD-TYPE" "B4GALT2 WILD-TYPE" "B4GALT2 WILD-TYPE" 
       TCGA-IB-7646        TCGA-IB-7647        TCGA-IB-7649        TCGA-IB-7651 
"B4GALT2 WILD-TYPE" "B4GALT2 WILD-TYPE" "B4GALT2 WILD-TYPE" "B4GALT2 WILD-TYPE" 
       TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-7886        TCGA-IB-7887 
  "B4GALT2 MUTATED" "B4GALT2 WILD-TYPE" "B4GALT2 WILD-TYPE" "B4GALT2 WILD-TYPE" 
       TCGA-IB-7888        TCGA-IB-7889        TCGA-IB-7890        TCGA-IB-7891 
"B4GALT2 WILD-TYPE" "B4GALT2 WILD-TYPE" "B4GALT2 WILD-TYPE"   "B4GALT2 MUTATED" 
       TCGA-IB-7893        TCGA-IB-7897        TCGA-IB-8126        TCGA-IB-8127 
"B4GALT2 WILD-TYPE" "B4GALT2 WILD-TYPE" "B4GALT2 WILD-TYPE" "B4GALT2 WILD-TYPE" 
       TCGA-IB-A5SO        TCGA-IB-A5SP        TCGA-IB-A5SQ        TCGA-IB-A5SS 
"B4GALT2 WILD-TYPE" "B4GALT2 WILD-TYPE" "B4GALT2 WILD-TYPE" "B4GALT2 WILD-TYPE" 
       TCGA-IB-A5ST        TCGA-IB-A6UG        TCGA-LB-A7SX        TCGA-OE-A75W 
"B4GALT2 WILD-TYPE" "B4GALT2 WILD-TYPE" "B4GALT2 WILD-TYPE" "B4GALT2 WILD-TYPE" 
       TCGA-PZ-A5RE        TCGA-Q3-A5QY        TCGA-US-A779        TCGA-US-A77E 
  "B4GALT2 MUTATED" "B4GALT2 WILD-TYPE"   "B4GALT2 MUTATED" "B4GALT2 WILD-TYPE" 
       TCGA-US-A77J 
"B4GALT2 WILD-TYPE" 
       TCGA-F2-6879        TCGA-F2-6880        TCGA-F2-7273        TCGA-F2-7276 
"B4GALT2 WILD-TYPE" "B4GALT2 WILD-TYPE" "B4GALT2 WILD-TYPE" "B4GALT2 WILD-TYPE" 
       TCGA-F2-A44G        TCGA-F2-A44H        TCGA-FB-A4P5        TCGA-FB-A4P6 
  "B4GALT2 MUTATED" "B4GALT2 WILD-TYPE" "B4GALT2 WILD-TYPE" "B4GALT2 WILD-TYPE" 
       TCGA-FB-A545        TCGA-FB-A5VM        TCGA-FB-A78T        TCGA-FB-A7DR 
"B4GALT2 WILD-TYPE" "B4GALT2 WILD-TYPE" "B4GALT2 WILD-TYPE" "B4GALT2 WILD-TYPE" 
       TCGA-FZ-5920        TCGA-FZ-5922        TCGA-FZ-5923        TCGA-H6-8124 
"B4GALT2 WILD-TYPE" "B4GALT2 WILD-TYPE" "B4GALT2 WILD-TYPE" "B4GALT2 WILD-TYPE" 
       TCGA-H6-A45N        TCGA-H8-A6C1        TCGA-HZ-7289        TCGA-HZ-7918 
"B4GALT2 WILD-TYPE" "B4GALT2 WILD-TYPE" "B4GALT2 WILD-TYPE" "B4GALT2 WILD-TYPE" 
       TCGA-HZ-7919        TCGA-HZ-7922        TCGA-HZ-7923        TCGA-HZ-7924 
"B4GALT2 WILD-TYPE" "B4GALT2 WILD-TYPE" "B4GALT2 WILD-TYPE" "B4GALT2 WILD-TYPE" 
       TCGA-HZ-7925        TCGA-HZ-7926        TCGA-HZ-8001        TCGA-HZ-8002 
"B4GALT2 WILD-TYPE" "B4GALT2 WILD-TYPE" "B4GALT2 WILD-TYPE" "B4GALT2 WILD-TYPE" 
       TCGA-HZ-8003        TCGA-HZ-8005        TCGA-HZ-8315        TCGA-HZ-8317 
"B4GALT2 WILD-TYPE" "B4GALT2 WILD-TYPE"   "B4GALT2 MUTATED" "B4GALT2 WILD-TYPE" 
       TCGA-HZ-8636        TCGA-HZ-8638        TCGA-HZ-A49G        TCGA-HZ-A49H 
  "B4GALT2 MUTATED" "B4GALT2 WILD-TYPE" "B4GALT2 WILD-TYPE" "B4GALT2 WILD-TYPE" 
       TCGA-HZ-A4BH        TCGA-HZ-A4BK        TCGA-IB-7644        TCGA-IB-7645 
"B4GALT2 WILD-TYPE" "B4GALT2 WILD-TYPE" "B4GALT2 WILD-TYPE" "B4GALT2 WILD-TYPE" 
       TCGA-IB-7646        TCGA-IB-7647        TCGA-IB-7649        TCGA-IB-7651 
"B4GALT2 WILD-TYPE" "B4GALT2 WILD-TYPE" "B4GALT2 WILD-TYPE" "B4GALT2 WILD-TYPE" 
       TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-7886        TCGA-IB-7887 
  "B4GALT2 MUTATED" "B4GALT2 WILD-TYPE" "B4GALT2 WILD-TYPE" "B4GALT2 WILD-TYPE" 
       TCGA-IB-7888        TCGA-IB-7889        TCGA-IB-7890        TCGA-IB-7891 
"B4GALT2 WILD-TYPE" "B4GALT2 WILD-TYPE" "B4GALT2 WILD-TYPE"   "B4GALT2 MUTATED" 
       TCGA-IB-7893        TCGA-IB-7897        TCGA-IB-8126        TCGA-IB-8127 
"B4GALT2 WILD-TYPE" "B4GALT2 WILD-TYPE" "B4GALT2 WILD-TYPE" "B4GALT2 WILD-TYPE" 
       TCGA-IB-A5SO        TCGA-IB-A5SP        TCGA-IB-A5SQ        TCGA-IB-A5SS 
"B4GALT2 WILD-TYPE" "B4GALT2 WILD-TYPE" "B4GALT2 WILD-TYPE" "B4GALT2 WILD-TYPE" 
       TCGA-IB-A5ST        TCGA-IB-A6UG        TCGA-LB-A7SX        TCGA-OE-A75W 
"B4GALT2 WILD-TYPE" "B4GALT2 WILD-TYPE" "B4GALT2 WILD-TYPE" "B4GALT2 WILD-TYPE" 
       TCGA-PZ-A5RE        TCGA-Q3-A5QY        TCGA-US-A779        TCGA-US-A77E 
  "B4GALT2 MUTATED" "B4GALT2 WILD-TYPE"   "B4GALT2 MUTATED" "B4GALT2 WILD-TYPE" 
       TCGA-US-A77J 
"B4GALT2 WILD-TYPE" 
[1] "hr=" "1.3"
D38V2, continuous
                   vv
clus                STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  B4GALT2 MUTATED          0        0         1         5         0        1
  B4GALT2 WILD-TYPE        1        4        10        46         2        2
D38V3, multiclass
                   vv
clus                T1+T2 T3+T4
  B4GALT2 MUTATED       0     7
  B4GALT2 WILD-TYPE     6    59
D38V4, multiclass
       clus
vv      B4GALT2 MUTATED B4GALT2 WILD-TYPE
  T1+T2               0                 6
  T3+T4               7                59
D38V5, binary
                   cls
clus                 0  1
  B4GALT2 MUTATED    2  5
  B4GALT2 WILD-TYPE 15 49
[1] "tbl2"
                   cls
clus                [,1] [,2]
  B4GALT2 MUTATED      2    5
  B4GALT2 WILD-TYPE   15   49
   clus
vv  B4GALT2 MUTATED B4GALT2 WILD-TYPE
  0               2                15
  1               5                49
                   vv
clus                M0 M1 MX
  B4GALT2 MUTATED    3  1  3
  B4GALT2 WILD-TYPE 36  2 27
D38V6, multiclass
    clus
vv   B4GALT2 MUTATED B4GALT2 WILD-TYPE
  M0               3                36
  M1               1                 2
  MX               3                27
D38V7, binary
                   cls
clus                 0  1
  B4GALT2 MUTATED    6  1
  B4GALT2 WILD-TYPE 30 35
[1] "tbl2"
                   cls
clus                [,1] [,2]
  B4GALT2 MUTATED      6    1
  B4GALT2 WILD-TYPE   30   35
        clus
vv       B4GALT2 MUTATED B4GALT2 WILD-TYPE
  FEMALE               6                30
  MALE                 1                35
                   vv
clus                PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  B4GALT2 MUTATED                                     7
  B4GALT2 WILD-TYPE                                  58
                   vv
clus                PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  B4GALT2 MUTATED                                       0
  B4GALT2 WILD-TYPE                                     4
                   vv
clus                PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  B4GALT2 MUTATED                                                  0
  B4GALT2 WILD-TYPE                                                2
D38V8, multiclass
                                                  clus
vv                                                 B4GALT2 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                            7
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                          0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA               0
                                                  clus
vv                                                 B4GALT2 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                             58
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                            4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                 2
D38V9, continuous
[1] "Remove cluster labels:" "B4GALT2 MUTATED"       
clus
  B4GALT2 MUTATED B4GALT2 WILD-TYPE 
                1                21 
       TCGA-F2-6880        TCGA-FB-A4P5        TCGA-FB-A4P6        TCGA-FB-A5VM 
"B4GALT2 WILD-TYPE" "B4GALT2 WILD-TYPE" "B4GALT2 WILD-TYPE" "B4GALT2 WILD-TYPE" 
       TCGA-FB-A78T        TCGA-FB-A7DR        TCGA-H6-8124        TCGA-H6-A45N 
"B4GALT2 WILD-TYPE" "B4GALT2 WILD-TYPE" "B4GALT2 WILD-TYPE" "B4GALT2 WILD-TYPE" 
       TCGA-H8-A6C1        TCGA-IB-7644        TCGA-IB-7649        TCGA-IB-7651 
"B4GALT2 WILD-TYPE" "B4GALT2 WILD-TYPE" "B4GALT2 WILD-TYPE" "B4GALT2 WILD-TYPE" 
       TCGA-IB-7885        TCGA-IB-7886        TCGA-IB-7887        TCGA-IB-8126 
"B4GALT2 WILD-TYPE" "B4GALT2 WILD-TYPE" "B4GALT2 WILD-TYPE" "B4GALT2 WILD-TYPE" 
       TCGA-IB-8127        TCGA-IB-A5SS        TCGA-IB-A6UG        TCGA-LB-A7SX 
"B4GALT2 WILD-TYPE" "B4GALT2 WILD-TYPE" "B4GALT2 WILD-TYPE" "B4GALT2 WILD-TYPE" 
       TCGA-OE-A75W 
"B4GALT2 WILD-TYPE" 
D38V10, continuous
[1] "Remove cluster labels:" "B4GALT2 MUTATED"       
clus
  B4GALT2 MUTATED B4GALT2 WILD-TYPE 
                1                18 
       TCGA-FB-A4P5        TCGA-FB-A4P6        TCGA-FB-A5VM        TCGA-FB-A78T 
"B4GALT2 WILD-TYPE" "B4GALT2 WILD-TYPE" "B4GALT2 WILD-TYPE" "B4GALT2 WILD-TYPE" 
       TCGA-FB-A7DR        TCGA-H6-8124        TCGA-H8-A6C1        TCGA-IB-7644 
"B4GALT2 WILD-TYPE" "B4GALT2 WILD-TYPE" "B4GALT2 WILD-TYPE" "B4GALT2 WILD-TYPE" 
       TCGA-IB-7649        TCGA-IB-7651        TCGA-IB-7885        TCGA-IB-7886 
"B4GALT2 WILD-TYPE" "B4GALT2 WILD-TYPE" "B4GALT2 WILD-TYPE" "B4GALT2 WILD-TYPE" 
       TCGA-IB-8126        TCGA-IB-8127        TCGA-IB-A5SS        TCGA-IB-A6UG 
"B4GALT2 WILD-TYPE" "B4GALT2 WILD-TYPE" "B4GALT2 WILD-TYPE" "B4GALT2 WILD-TYPE" 
       TCGA-LB-A7SX        TCGA-OE-A75W 
"B4GALT2 WILD-TYPE" "B4GALT2 WILD-TYPE" 
                   vv
clus                R0 R1 RX
  B4GALT2 MUTATED    2  4  0
  B4GALT2 WILD-TYPE 40 20  2
D38V11, multiclass
    clus
vv   B4GALT2 MUTATED B4GALT2 WILD-TYPE
  R0               2                40
  R1               4                20
  RX               0                 2
D38V12, continuous

Clustering(39) Variable = SGOL2 MUTATION ANALYSIS
D39V1, survival
                 sevent
clus2              0  1
  SGOL2 MUTATED    5  2
  SGOL2 WILD-TYPE 35 27
  SGOL2 MUTATED SGOL2 WILD-TYPE 
              7              62 
  SGOL2 MUTATED SGOL2 WILD-TYPE 
              2              27 
$`SGOL2 MUTATED`
TCGA-F2-7276 TCGA-FB-A545 TCGA-HZ-8638 TCGA-HZ-A4BK TCGA-IB-7651 TCGA-IB-7891 
        7.10        12.66         2.99         1.51        19.82        16.04 
TCGA-IB-A5SP 
        9.86 

$`SGOL2 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-A44G TCGA-F2-A44H TCGA-FB-A4P5 
       10.98         9.70        11.84         5.03        19.27         0.13 
TCGA-FB-A4P6 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR TCGA-FZ-5920 TCGA-FZ-5922 
       11.93         2.47         0.03         5.46         2.01        36.20 
TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7289 TCGA-HZ-7918 
       20.81        12.89         7.66        13.02         7.89         0.92 
TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 
        0.66         0.13         0.26        12.13        11.87         0.26 
TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 
        0.62         0.79         0.69         3.95         0.92         0.53 
TCGA-HZ-8636 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-IB-7644 TCGA-IB-7645 
        0.16         0.76         0.95         6.38        11.41        49.38 
TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7886 
        4.77        21.90        15.35        15.65        27.98         4.04 
TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7893 TCGA-IB-7897 
        3.62        43.79        15.81        19.66         3.85        15.98 
TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST 
        0.56        17.16        10.82         7.20        15.12         0.26 
TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 
        1.35         4.18         3.62         8.12        13.68        16.80 
TCGA-US-A77E TCGA-US-A77J 
       14.14        18.67 

  SGOL2 MUTATED SGOL2 WILD-TYPE 
           1.51            0.03 
  SGOL2 MUTATED SGOL2 WILD-TYPE 
          19.82           49.38 
  SGOL2 MUTATED SGOL2 WILD-TYPE 
           9.86            7.43 
[1] "1.5 - 19.8 (9.9)" "0.0 - 49.4 (7.4)"
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"SGOL2 WILD-TYPE" "SGOL2 WILD-TYPE" "SGOL2 WILD-TYPE"   "SGOL2 MUTATED" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"SGOL2 WILD-TYPE" "SGOL2 WILD-TYPE" "SGOL2 WILD-TYPE" "SGOL2 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
  "SGOL2 MUTATED" "SGOL2 WILD-TYPE" "SGOL2 WILD-TYPE" "SGOL2 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"SGOL2 WILD-TYPE" "SGOL2 WILD-TYPE" "SGOL2 WILD-TYPE" "SGOL2 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"SGOL2 WILD-TYPE" "SGOL2 WILD-TYPE" "SGOL2 WILD-TYPE" "SGOL2 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"SGOL2 WILD-TYPE" "SGOL2 WILD-TYPE" "SGOL2 WILD-TYPE" "SGOL2 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"SGOL2 WILD-TYPE" "SGOL2 WILD-TYPE" "SGOL2 WILD-TYPE" "SGOL2 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"SGOL2 WILD-TYPE" "SGOL2 WILD-TYPE" "SGOL2 WILD-TYPE" "SGOL2 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"SGOL2 WILD-TYPE"   "SGOL2 MUTATED" "SGOL2 WILD-TYPE" "SGOL2 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"SGOL2 WILD-TYPE"   "SGOL2 MUTATED" "SGOL2 WILD-TYPE" "SGOL2 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"SGOL2 WILD-TYPE" "SGOL2 WILD-TYPE" "SGOL2 WILD-TYPE"   "SGOL2 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"SGOL2 WILD-TYPE" "SGOL2 WILD-TYPE" "SGOL2 WILD-TYPE" "SGOL2 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"SGOL2 WILD-TYPE" "SGOL2 WILD-TYPE" "SGOL2 WILD-TYPE"   "SGOL2 MUTATED" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"SGOL2 WILD-TYPE" "SGOL2 WILD-TYPE" "SGOL2 WILD-TYPE" "SGOL2 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"SGOL2 WILD-TYPE"   "SGOL2 MUTATED" "SGOL2 WILD-TYPE" "SGOL2 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"SGOL2 WILD-TYPE" "SGOL2 WILD-TYPE" "SGOL2 WILD-TYPE" "SGOL2 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"SGOL2 WILD-TYPE" "SGOL2 WILD-TYPE" "SGOL2 WILD-TYPE" "SGOL2 WILD-TYPE" 
     TCGA-US-A77J 
"SGOL2 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"SGOL2 WILD-TYPE" "SGOL2 WILD-TYPE" "SGOL2 WILD-TYPE"   "SGOL2 MUTATED" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"SGOL2 WILD-TYPE" "SGOL2 WILD-TYPE" "SGOL2 WILD-TYPE" "SGOL2 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
  "SGOL2 MUTATED" "SGOL2 WILD-TYPE" "SGOL2 WILD-TYPE" "SGOL2 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"SGOL2 WILD-TYPE" "SGOL2 WILD-TYPE" "SGOL2 WILD-TYPE" "SGOL2 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"SGOL2 WILD-TYPE" "SGOL2 WILD-TYPE" "SGOL2 WILD-TYPE" "SGOL2 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"SGOL2 WILD-TYPE" "SGOL2 WILD-TYPE" "SGOL2 WILD-TYPE" "SGOL2 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"SGOL2 WILD-TYPE" "SGOL2 WILD-TYPE" "SGOL2 WILD-TYPE" "SGOL2 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"SGOL2 WILD-TYPE" "SGOL2 WILD-TYPE" "SGOL2 WILD-TYPE" "SGOL2 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"SGOL2 WILD-TYPE"   "SGOL2 MUTATED" "SGOL2 WILD-TYPE" "SGOL2 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"SGOL2 WILD-TYPE"   "SGOL2 MUTATED" "SGOL2 WILD-TYPE" "SGOL2 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"SGOL2 WILD-TYPE" "SGOL2 WILD-TYPE" "SGOL2 WILD-TYPE"   "SGOL2 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"SGOL2 WILD-TYPE" "SGOL2 WILD-TYPE" "SGOL2 WILD-TYPE" "SGOL2 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"SGOL2 WILD-TYPE" "SGOL2 WILD-TYPE" "SGOL2 WILD-TYPE"   "SGOL2 MUTATED" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"SGOL2 WILD-TYPE" "SGOL2 WILD-TYPE" "SGOL2 WILD-TYPE" "SGOL2 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"SGOL2 WILD-TYPE"   "SGOL2 MUTATED" "SGOL2 WILD-TYPE" "SGOL2 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"SGOL2 WILD-TYPE" "SGOL2 WILD-TYPE" "SGOL2 WILD-TYPE" "SGOL2 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"SGOL2 WILD-TYPE" "SGOL2 WILD-TYPE" "SGOL2 WILD-TYPE" "SGOL2 WILD-TYPE" 
     TCGA-US-A77J 
"SGOL2 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"SGOL2 WILD-TYPE" "SGOL2 WILD-TYPE" "SGOL2 WILD-TYPE"   "SGOL2 MUTATED" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"SGOL2 WILD-TYPE" "SGOL2 WILD-TYPE" "SGOL2 WILD-TYPE" "SGOL2 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
  "SGOL2 MUTATED" "SGOL2 WILD-TYPE" "SGOL2 WILD-TYPE" "SGOL2 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"SGOL2 WILD-TYPE" "SGOL2 WILD-TYPE" "SGOL2 WILD-TYPE" "SGOL2 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"SGOL2 WILD-TYPE" "SGOL2 WILD-TYPE" "SGOL2 WILD-TYPE" "SGOL2 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"SGOL2 WILD-TYPE" "SGOL2 WILD-TYPE" "SGOL2 WILD-TYPE" "SGOL2 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"SGOL2 WILD-TYPE" "SGOL2 WILD-TYPE" "SGOL2 WILD-TYPE" "SGOL2 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"SGOL2 WILD-TYPE" "SGOL2 WILD-TYPE" "SGOL2 WILD-TYPE" "SGOL2 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"SGOL2 WILD-TYPE"   "SGOL2 MUTATED" "SGOL2 WILD-TYPE" "SGOL2 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"SGOL2 WILD-TYPE"   "SGOL2 MUTATED" "SGOL2 WILD-TYPE" "SGOL2 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"SGOL2 WILD-TYPE" "SGOL2 WILD-TYPE" "SGOL2 WILD-TYPE"   "SGOL2 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"SGOL2 WILD-TYPE" "SGOL2 WILD-TYPE" "SGOL2 WILD-TYPE" "SGOL2 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"SGOL2 WILD-TYPE" "SGOL2 WILD-TYPE" "SGOL2 WILD-TYPE"   "SGOL2 MUTATED" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"SGOL2 WILD-TYPE" "SGOL2 WILD-TYPE" "SGOL2 WILD-TYPE" "SGOL2 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"SGOL2 WILD-TYPE"   "SGOL2 MUTATED" "SGOL2 WILD-TYPE" "SGOL2 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"SGOL2 WILD-TYPE" "SGOL2 WILD-TYPE" "SGOL2 WILD-TYPE" "SGOL2 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"SGOL2 WILD-TYPE" "SGOL2 WILD-TYPE" "SGOL2 WILD-TYPE" "SGOL2 WILD-TYPE" 
     TCGA-US-A77J 
"SGOL2 WILD-TYPE" 
[1] "hr=" "1.5"
D39V2, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  SGOL2 MUTATED          1        0         1         5         0        0
  SGOL2 WILD-TYPE        0        4        10        46         2        3
D39V3, multiclass
                 vv
clus              T1+T2 T3+T4
  SGOL2 MUTATED       1     6
  SGOL2 WILD-TYPE     5    60
D39V4, multiclass
       clus
vv      SGOL2 MUTATED SGOL2 WILD-TYPE
  T1+T2             1               5
  T3+T4             6              60
D39V5, binary
                 cls
clus               0  1
  SGOL2 MUTATED    2  5
  SGOL2 WILD-TYPE 15 49
[1] "tbl2"
                 cls
clus              [,1] [,2]
  SGOL2 MUTATED      2    5
  SGOL2 WILD-TYPE   15   49
   clus
vv  SGOL2 MUTATED SGOL2 WILD-TYPE
  0             2              15
  1             5              49
                 vv
clus              M0 M1 MX
  SGOL2 MUTATED    5  0  2
  SGOL2 WILD-TYPE 34  3 28
D39V6, multiclass
    clus
vv   SGOL2 MUTATED SGOL2 WILD-TYPE
  M0             5              34
  M1             0               3
  MX             2              28
D39V7, binary
                 cls
clus               0  1
  SGOL2 MUTATED    3  4
  SGOL2 WILD-TYPE 33 32
[1] "tbl2"
                 cls
clus              [,1] [,2]
  SGOL2 MUTATED      3    4
  SGOL2 WILD-TYPE   33   32
        clus
vv       SGOL2 MUTATED SGOL2 WILD-TYPE
  FEMALE             3              33
  MALE               4              32
                 vv
clus              PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  SGOL2 MUTATED                                     5
  SGOL2 WILD-TYPE                                  60
                 vv
clus              PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  SGOL2 MUTATED                                       1
  SGOL2 WILD-TYPE                                     3
                 vv
clus              PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  SGOL2 MUTATED                                                  1
  SGOL2 WILD-TYPE                                                1
D39V8, multiclass
                                                  clus
vv                                                 SGOL2 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                          5
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                        1
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA             1
                                                  clus
vv                                                 SGOL2 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                           60
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                          3
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA               1
D39V9, continuous
[1] "Remove cluster labels:" "SGOL2 MUTATED"         
clus
  SGOL2 MUTATED SGOL2 WILD-TYPE 
              2              20 
     TCGA-F2-6880      TCGA-FB-A4P5      TCGA-FB-A4P6      TCGA-FB-A5VM 
"SGOL2 WILD-TYPE" "SGOL2 WILD-TYPE" "SGOL2 WILD-TYPE" "SGOL2 WILD-TYPE" 
     TCGA-FB-A78T      TCGA-FB-A7DR      TCGA-H6-8124      TCGA-H6-A45N 
"SGOL2 WILD-TYPE" "SGOL2 WILD-TYPE" "SGOL2 WILD-TYPE" "SGOL2 WILD-TYPE" 
     TCGA-H8-A6C1      TCGA-IB-7644      TCGA-IB-7649      TCGA-IB-7885 
"SGOL2 WILD-TYPE" "SGOL2 WILD-TYPE" "SGOL2 WILD-TYPE" "SGOL2 WILD-TYPE" 
     TCGA-IB-7886      TCGA-IB-7887      TCGA-IB-8126      TCGA-IB-8127 
"SGOL2 WILD-TYPE" "SGOL2 WILD-TYPE" "SGOL2 WILD-TYPE" "SGOL2 WILD-TYPE" 
     TCGA-IB-A5SS      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"SGOL2 WILD-TYPE" "SGOL2 WILD-TYPE" "SGOL2 WILD-TYPE" "SGOL2 WILD-TYPE" 
D39V10, continuous
[1] "Remove cluster labels:" "SGOL2 MUTATED"         
clus
  SGOL2 MUTATED SGOL2 WILD-TYPE 
              2              17 
     TCGA-FB-A4P5      TCGA-FB-A4P6      TCGA-FB-A5VM      TCGA-FB-A78T 
"SGOL2 WILD-TYPE" "SGOL2 WILD-TYPE" "SGOL2 WILD-TYPE" "SGOL2 WILD-TYPE" 
     TCGA-FB-A7DR      TCGA-H6-8124      TCGA-H8-A6C1      TCGA-IB-7644 
"SGOL2 WILD-TYPE" "SGOL2 WILD-TYPE" "SGOL2 WILD-TYPE" "SGOL2 WILD-TYPE" 
     TCGA-IB-7649      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-8126 
"SGOL2 WILD-TYPE" "SGOL2 WILD-TYPE" "SGOL2 WILD-TYPE" "SGOL2 WILD-TYPE" 
     TCGA-IB-8127      TCGA-IB-A5SS      TCGA-IB-A6UG      TCGA-LB-A7SX 
"SGOL2 WILD-TYPE" "SGOL2 WILD-TYPE" "SGOL2 WILD-TYPE" "SGOL2 WILD-TYPE" 
     TCGA-OE-A75W 
"SGOL2 WILD-TYPE" 
                 vv
clus              R0 R1 RX
  SGOL2 MUTATED    4  2  0
  SGOL2 WILD-TYPE 38 22  2
D39V11, multiclass
    clus
vv   SGOL2 MUTATED SGOL2 WILD-TYPE
  R0             4              38
  R1             2              22
  RX             0               2
D39V12, continuous

Clustering(40) Variable = EDC4 MUTATION ANALYSIS
D40V1, survival
                sevent
clus2             0  1
  EDC4 MUTATED   10  7
  EDC4 WILD-TYPE 30 22
  EDC4 MUTATED EDC4 WILD-TYPE 
            17             52 
  EDC4 MUTATED EDC4 WILD-TYPE 
             7             22 
$`EDC4 MUTATED`
TCGA-F2-6880 TCGA-FZ-5920 TCGA-H6-A45N TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-8005 
        9.70         2.01         7.66         0.13         0.26         3.95 
TCGA-HZ-8317 TCGA-HZ-8636 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-IB-7644 TCGA-IB-7645 
        0.53         0.16         0.76         0.95        11.41        49.38 
TCGA-IB-7651 TCGA-IB-A5ST TCGA-IB-A6UG TCGA-OE-A75W TCGA-PZ-A5RE 
       19.82         0.26         1.35         3.62         8.12 

$`EDC4 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H TCGA-FB-A4P5 
       10.98        11.84         7.10         5.03        19.27         0.13 
TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR TCGA-FZ-5922 
       11.93        12.66         2.47         0.03         5.46        36.20 
TCGA-FZ-5923 TCGA-H6-8124 TCGA-H8-A6C1 TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-7919 
       20.81        12.89        13.02         7.89         0.92         0.66 
TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 
       12.13        11.87         0.26         0.62         0.79         0.69 
TCGA-HZ-8315 TCGA-HZ-8638 TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7646 TCGA-IB-7647 
        0.92         2.99         6.38         1.51         4.77        21.90 
TCGA-IB-7649 TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7888 
       15.35        15.65        27.98         4.04         3.62        43.79 
TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-8126 
       15.81        19.66        16.04         3.85        15.98         0.56 
TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-LB-A7SX 
       17.16        10.82         9.86         7.20        15.12         4.18 
TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
       13.68        16.80        14.14        18.67 

  EDC4 MUTATED EDC4 WILD-TYPE 
          0.13           0.03 
  EDC4 MUTATED EDC4 WILD-TYPE 
         49.38          43.79 
  EDC4 MUTATED EDC4 WILD-TYPE 
          2.01          10.90 
[1] "0.1 - 49.4 (2.0)"  "0.0 - 43.8 (10.9)"
    TCGA-F2-6879     TCGA-F2-6880     TCGA-F2-7273     TCGA-F2-7276 
"EDC4 WILD-TYPE"   "EDC4 MUTATED" "EDC4 WILD-TYPE" "EDC4 WILD-TYPE" 
    TCGA-F2-A44G     TCGA-F2-A44H     TCGA-FB-A4P5     TCGA-FB-A4P6 
"EDC4 WILD-TYPE" "EDC4 WILD-TYPE" "EDC4 WILD-TYPE" "EDC4 WILD-TYPE" 
    TCGA-FB-A545     TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-FB-A7DR 
"EDC4 WILD-TYPE" "EDC4 WILD-TYPE" "EDC4 WILD-TYPE" "EDC4 WILD-TYPE" 
    TCGA-FZ-5920     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-H6-8124 
  "EDC4 MUTATED" "EDC4 WILD-TYPE" "EDC4 WILD-TYPE" "EDC4 WILD-TYPE" 
    TCGA-H6-A45N     TCGA-H8-A6C1     TCGA-HZ-7289     TCGA-HZ-7918 
  "EDC4 MUTATED" "EDC4 WILD-TYPE" "EDC4 WILD-TYPE" "EDC4 WILD-TYPE" 
    TCGA-HZ-7919     TCGA-HZ-7922     TCGA-HZ-7923     TCGA-HZ-7924 
"EDC4 WILD-TYPE"   "EDC4 MUTATED"   "EDC4 MUTATED" "EDC4 WILD-TYPE" 
    TCGA-HZ-7925     TCGA-HZ-7926     TCGA-HZ-8001     TCGA-HZ-8002 
"EDC4 WILD-TYPE" "EDC4 WILD-TYPE" "EDC4 WILD-TYPE" "EDC4 WILD-TYPE" 
    TCGA-HZ-8003     TCGA-HZ-8005     TCGA-HZ-8315     TCGA-HZ-8317 
"EDC4 WILD-TYPE"   "EDC4 MUTATED" "EDC4 WILD-TYPE"   "EDC4 MUTATED" 
    TCGA-HZ-8636     TCGA-HZ-8638     TCGA-HZ-A49G     TCGA-HZ-A49H 
  "EDC4 MUTATED" "EDC4 WILD-TYPE"   "EDC4 MUTATED"   "EDC4 MUTATED" 
    TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-IB-7644     TCGA-IB-7645 
"EDC4 WILD-TYPE" "EDC4 WILD-TYPE"   "EDC4 MUTATED"   "EDC4 MUTATED" 
    TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7651 
"EDC4 WILD-TYPE" "EDC4 WILD-TYPE" "EDC4 WILD-TYPE"   "EDC4 MUTATED" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887 
"EDC4 WILD-TYPE" "EDC4 WILD-TYPE" "EDC4 WILD-TYPE" "EDC4 WILD-TYPE" 
    TCGA-IB-7888     TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891 
"EDC4 WILD-TYPE" "EDC4 WILD-TYPE" "EDC4 WILD-TYPE" "EDC4 WILD-TYPE" 
    TCGA-IB-7893     TCGA-IB-7897     TCGA-IB-8126     TCGA-IB-8127 
"EDC4 WILD-TYPE" "EDC4 WILD-TYPE" "EDC4 WILD-TYPE" "EDC4 WILD-TYPE" 
    TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS 
"EDC4 WILD-TYPE" "EDC4 WILD-TYPE" "EDC4 WILD-TYPE" "EDC4 WILD-TYPE" 
    TCGA-IB-A5ST     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
  "EDC4 MUTATED"   "EDC4 MUTATED" "EDC4 WILD-TYPE"   "EDC4 MUTATED" 
    TCGA-PZ-A5RE     TCGA-Q3-A5QY     TCGA-US-A779     TCGA-US-A77E 
  "EDC4 MUTATED" "EDC4 WILD-TYPE" "EDC4 WILD-TYPE" "EDC4 WILD-TYPE" 
    TCGA-US-A77J 
"EDC4 WILD-TYPE" 
    TCGA-F2-6879     TCGA-F2-6880     TCGA-F2-7273     TCGA-F2-7276 
"EDC4 WILD-TYPE"   "EDC4 MUTATED" "EDC4 WILD-TYPE" "EDC4 WILD-TYPE" 
    TCGA-F2-A44G     TCGA-F2-A44H     TCGA-FB-A4P5     TCGA-FB-A4P6 
"EDC4 WILD-TYPE" "EDC4 WILD-TYPE" "EDC4 WILD-TYPE" "EDC4 WILD-TYPE" 
    TCGA-FB-A545     TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-FB-A7DR 
"EDC4 WILD-TYPE" "EDC4 WILD-TYPE" "EDC4 WILD-TYPE" "EDC4 WILD-TYPE" 
    TCGA-FZ-5920     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-H6-8124 
  "EDC4 MUTATED" "EDC4 WILD-TYPE" "EDC4 WILD-TYPE" "EDC4 WILD-TYPE" 
    TCGA-H6-A45N     TCGA-H8-A6C1     TCGA-HZ-7289     TCGA-HZ-7918 
  "EDC4 MUTATED" "EDC4 WILD-TYPE" "EDC4 WILD-TYPE" "EDC4 WILD-TYPE" 
    TCGA-HZ-7919     TCGA-HZ-7922     TCGA-HZ-7923     TCGA-HZ-7924 
"EDC4 WILD-TYPE"   "EDC4 MUTATED"   "EDC4 MUTATED" "EDC4 WILD-TYPE" 
    TCGA-HZ-7925     TCGA-HZ-7926     TCGA-HZ-8001     TCGA-HZ-8002 
"EDC4 WILD-TYPE" "EDC4 WILD-TYPE" "EDC4 WILD-TYPE" "EDC4 WILD-TYPE" 
    TCGA-HZ-8003     TCGA-HZ-8005     TCGA-HZ-8315     TCGA-HZ-8317 
"EDC4 WILD-TYPE"   "EDC4 MUTATED" "EDC4 WILD-TYPE"   "EDC4 MUTATED" 
    TCGA-HZ-8636     TCGA-HZ-8638     TCGA-HZ-A49G     TCGA-HZ-A49H 
  "EDC4 MUTATED" "EDC4 WILD-TYPE"   "EDC4 MUTATED"   "EDC4 MUTATED" 
    TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-IB-7644     TCGA-IB-7645 
"EDC4 WILD-TYPE" "EDC4 WILD-TYPE"   "EDC4 MUTATED"   "EDC4 MUTATED" 
    TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7651 
"EDC4 WILD-TYPE" "EDC4 WILD-TYPE" "EDC4 WILD-TYPE"   "EDC4 MUTATED" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887 
"EDC4 WILD-TYPE" "EDC4 WILD-TYPE" "EDC4 WILD-TYPE" "EDC4 WILD-TYPE" 
    TCGA-IB-7888     TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891 
"EDC4 WILD-TYPE" "EDC4 WILD-TYPE" "EDC4 WILD-TYPE" "EDC4 WILD-TYPE" 
    TCGA-IB-7893     TCGA-IB-7897     TCGA-IB-8126     TCGA-IB-8127 
"EDC4 WILD-TYPE" "EDC4 WILD-TYPE" "EDC4 WILD-TYPE" "EDC4 WILD-TYPE" 
    TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS 
"EDC4 WILD-TYPE" "EDC4 WILD-TYPE" "EDC4 WILD-TYPE" "EDC4 WILD-TYPE" 
    TCGA-IB-A5ST     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
  "EDC4 MUTATED"   "EDC4 MUTATED" "EDC4 WILD-TYPE"   "EDC4 MUTATED" 
    TCGA-PZ-A5RE     TCGA-Q3-A5QY     TCGA-US-A779     TCGA-US-A77E 
  "EDC4 MUTATED" "EDC4 WILD-TYPE" "EDC4 WILD-TYPE" "EDC4 WILD-TYPE" 
    TCGA-US-A77J 
"EDC4 WILD-TYPE" 
    TCGA-F2-6879     TCGA-F2-6880     TCGA-F2-7273     TCGA-F2-7276 
"EDC4 WILD-TYPE"   "EDC4 MUTATED" "EDC4 WILD-TYPE" "EDC4 WILD-TYPE" 
    TCGA-F2-A44G     TCGA-F2-A44H     TCGA-FB-A4P5     TCGA-FB-A4P6 
"EDC4 WILD-TYPE" "EDC4 WILD-TYPE" "EDC4 WILD-TYPE" "EDC4 WILD-TYPE" 
    TCGA-FB-A545     TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-FB-A7DR 
"EDC4 WILD-TYPE" "EDC4 WILD-TYPE" "EDC4 WILD-TYPE" "EDC4 WILD-TYPE" 
    TCGA-FZ-5920     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-H6-8124 
  "EDC4 MUTATED" "EDC4 WILD-TYPE" "EDC4 WILD-TYPE" "EDC4 WILD-TYPE" 
    TCGA-H6-A45N     TCGA-H8-A6C1     TCGA-HZ-7289     TCGA-HZ-7918 
  "EDC4 MUTATED" "EDC4 WILD-TYPE" "EDC4 WILD-TYPE" "EDC4 WILD-TYPE" 
    TCGA-HZ-7919     TCGA-HZ-7922     TCGA-HZ-7923     TCGA-HZ-7924 
"EDC4 WILD-TYPE"   "EDC4 MUTATED"   "EDC4 MUTATED" "EDC4 WILD-TYPE" 
    TCGA-HZ-7925     TCGA-HZ-7926     TCGA-HZ-8001     TCGA-HZ-8002 
"EDC4 WILD-TYPE" "EDC4 WILD-TYPE" "EDC4 WILD-TYPE" "EDC4 WILD-TYPE" 
    TCGA-HZ-8003     TCGA-HZ-8005     TCGA-HZ-8315     TCGA-HZ-8317 
"EDC4 WILD-TYPE"   "EDC4 MUTATED" "EDC4 WILD-TYPE"   "EDC4 MUTATED" 
    TCGA-HZ-8636     TCGA-HZ-8638     TCGA-HZ-A49G     TCGA-HZ-A49H 
  "EDC4 MUTATED" "EDC4 WILD-TYPE"   "EDC4 MUTATED"   "EDC4 MUTATED" 
    TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-IB-7644     TCGA-IB-7645 
"EDC4 WILD-TYPE" "EDC4 WILD-TYPE"   "EDC4 MUTATED"   "EDC4 MUTATED" 
    TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7651 
"EDC4 WILD-TYPE" "EDC4 WILD-TYPE" "EDC4 WILD-TYPE"   "EDC4 MUTATED" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887 
"EDC4 WILD-TYPE" "EDC4 WILD-TYPE" "EDC4 WILD-TYPE" "EDC4 WILD-TYPE" 
    TCGA-IB-7888     TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891 
"EDC4 WILD-TYPE" "EDC4 WILD-TYPE" "EDC4 WILD-TYPE" "EDC4 WILD-TYPE" 
    TCGA-IB-7893     TCGA-IB-7897     TCGA-IB-8126     TCGA-IB-8127 
"EDC4 WILD-TYPE" "EDC4 WILD-TYPE" "EDC4 WILD-TYPE" "EDC4 WILD-TYPE" 
    TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS 
"EDC4 WILD-TYPE" "EDC4 WILD-TYPE" "EDC4 WILD-TYPE" "EDC4 WILD-TYPE" 
    TCGA-IB-A5ST     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
  "EDC4 MUTATED"   "EDC4 MUTATED" "EDC4 WILD-TYPE"   "EDC4 MUTATED" 
    TCGA-PZ-A5RE     TCGA-Q3-A5QY     TCGA-US-A779     TCGA-US-A77E 
  "EDC4 MUTATED" "EDC4 WILD-TYPE" "EDC4 WILD-TYPE" "EDC4 WILD-TYPE" 
    TCGA-US-A77J 
"EDC4 WILD-TYPE" 
[1] "hr=" "1.3"
D40V2, continuous
                vv
clus             STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  EDC4 MUTATED          0        0         2        13         0        2
  EDC4 WILD-TYPE        1        4         9        38         2        1
D40V3, multiclass
                vv
clus             T1+T2 T3+T4
  EDC4 MUTATED       1    16
  EDC4 WILD-TYPE     5    50
D40V4, multiclass
       clus
vv      EDC4 MUTATED EDC4 WILD-TYPE
  T1+T2            1              5
  T3+T4           16             50
D40V5, binary
                cls
clus              0  1
  EDC4 MUTATED    3 14
  EDC4 WILD-TYPE 14 40
[1] "tbl2"
                cls
clus             [,1] [,2]
  EDC4 MUTATED      3   14
  EDC4 WILD-TYPE   14   40
   clus
vv  EDC4 MUTATED EDC4 WILD-TYPE
  0            3             14
  1           14             40
                vv
clus             M0 M1 MX
  EDC4 MUTATED    7  2  8
  EDC4 WILD-TYPE 32  1 22
D40V6, multiclass
    clus
vv   EDC4 MUTATED EDC4 WILD-TYPE
  M0            7             32
  M1            2              1
  MX            8             22
D40V7, binary
                cls
clus              0  1
  EDC4 MUTATED   11  6
  EDC4 WILD-TYPE 25 30
[1] "tbl2"
                cls
clus             [,1] [,2]
  EDC4 MUTATED     11    6
  EDC4 WILD-TYPE   25   30
        clus
vv       EDC4 MUTATED EDC4 WILD-TYPE
  FEMALE           11             25
  MALE              6             30
                vv
clus             PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  EDC4 MUTATED                                    16
  EDC4 WILD-TYPE                                  49
                vv
clus             PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  EDC4 MUTATED                                       1
  EDC4 WILD-TYPE                                     3
                vv
clus             PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  EDC4 MUTATED                                                  0
  EDC4 WILD-TYPE                                                2
D40V8, multiclass
                                                  clus
vv                                                 EDC4 MUTATED EDC4 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                        16             49
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                       1              3
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA            0              2
D40V9, continuous
D40V10, continuous
                vv
clus             R0 R1 RX
  EDC4 MUTATED    9  6  0
  EDC4 WILD-TYPE 33 18  2
D40V11, multiclass
    clus
vv   EDC4 MUTATED EDC4 WILD-TYPE
  R0            9             33
  R1            6             18
  RX            0              2
D40V12, continuous

Clustering(41) Variable = RAB11FIP5 MUTATION ANALYSIS
D41V1, survival
                     sevent
clus2                  0  1
  RAB11FIP5 MUTATED    3  4
  RAB11FIP5 WILD-TYPE 37 25
  RAB11FIP5 MUTATED RAB11FIP5 WILD-TYPE 
                  7                  62 
  RAB11FIP5 MUTATED RAB11FIP5 WILD-TYPE 
                  4                  25 
$`RAB11FIP5 MUTATED`
TCGA-H8-A6C1 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 TCGA-IB-7888 TCGA-IB-7890 
       13.02         0.79         0.69         3.95        43.79        19.66 
TCGA-IB-7897 
       15.98 

$`RAB11FIP5 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P5 TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR 
        0.13        11.93        12.66         2.47         0.03         5.46 
TCGA-FZ-5920 TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-HZ-7289 
        2.01        36.20        20.81        12.89         7.66         7.89 
TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 
        0.92         0.66         0.13         0.26        12.13        11.87 
TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8636 TCGA-HZ-8638 
        0.26         0.62         0.92         0.53         0.16         2.99 
TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7645 
        0.76         0.95         6.38         1.51        11.41        49.38 
TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7651 TCGA-IB-7652 TCGA-IB-7885 
        4.77        21.90        15.35        19.82        15.65        27.98 
TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7889 TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-8126 
        4.04         3.62        15.81        16.04         3.85         0.56 
TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST 
       17.16        10.82         9.86         7.20        15.12         0.26 
TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 
        1.35         4.18         3.62         8.12        13.68        16.80 
TCGA-US-A77E TCGA-US-A77J 
       14.14        18.67 

  RAB11FIP5 MUTATED RAB11FIP5 WILD-TYPE 
               0.69                0.03 
  RAB11FIP5 MUTATED RAB11FIP5 WILD-TYPE 
              43.79               49.38 
  RAB11FIP5 MUTATED RAB11FIP5 WILD-TYPE 
              13.02                7.43 
[1] "0.7 - 43.8 (13.0)" "0.0 - 49.4 (7.4)" 
         TCGA-F2-6879          TCGA-F2-6880          TCGA-F2-7273 
"RAB11FIP5 WILD-TYPE" "RAB11FIP5 WILD-TYPE" "RAB11FIP5 WILD-TYPE" 
         TCGA-F2-7276          TCGA-F2-A44G          TCGA-F2-A44H 
"RAB11FIP5 WILD-TYPE" "RAB11FIP5 WILD-TYPE" "RAB11FIP5 WILD-TYPE" 
         TCGA-FB-A4P5          TCGA-FB-A4P6          TCGA-FB-A545 
"RAB11FIP5 WILD-TYPE" "RAB11FIP5 WILD-TYPE" "RAB11FIP5 WILD-TYPE" 
         TCGA-FB-A5VM          TCGA-FB-A78T          TCGA-FB-A7DR 
"RAB11FIP5 WILD-TYPE" "RAB11FIP5 WILD-TYPE" "RAB11FIP5 WILD-TYPE" 
         TCGA-FZ-5920          TCGA-FZ-5922          TCGA-FZ-5923 
"RAB11FIP5 WILD-TYPE" "RAB11FIP5 WILD-TYPE" "RAB11FIP5 WILD-TYPE" 
         TCGA-H6-8124          TCGA-H6-A45N          TCGA-H8-A6C1 
"RAB11FIP5 WILD-TYPE" "RAB11FIP5 WILD-TYPE"   "RAB11FIP5 MUTATED" 
         TCGA-HZ-7289          TCGA-HZ-7918          TCGA-HZ-7919 
"RAB11FIP5 WILD-TYPE" "RAB11FIP5 WILD-TYPE" "RAB11FIP5 WILD-TYPE" 
         TCGA-HZ-7922          TCGA-HZ-7923          TCGA-HZ-7924 
"RAB11FIP5 WILD-TYPE" "RAB11FIP5 WILD-TYPE" "RAB11FIP5 WILD-TYPE" 
         TCGA-HZ-7925          TCGA-HZ-7926          TCGA-HZ-8001 
"RAB11FIP5 WILD-TYPE" "RAB11FIP5 WILD-TYPE" "RAB11FIP5 WILD-TYPE" 
         TCGA-HZ-8002          TCGA-HZ-8003          TCGA-HZ-8005 
  "RAB11FIP5 MUTATED"   "RAB11FIP5 MUTATED"   "RAB11FIP5 MUTATED" 
         TCGA-HZ-8315          TCGA-HZ-8317          TCGA-HZ-8636 
"RAB11FIP5 WILD-TYPE" "RAB11FIP5 WILD-TYPE" "RAB11FIP5 WILD-TYPE" 
         TCGA-HZ-8638          TCGA-HZ-A49G          TCGA-HZ-A49H 
"RAB11FIP5 WILD-TYPE" "RAB11FIP5 WILD-TYPE" "RAB11FIP5 WILD-TYPE" 
         TCGA-HZ-A4BH          TCGA-HZ-A4BK          TCGA-IB-7644 
"RAB11FIP5 WILD-TYPE" "RAB11FIP5 WILD-TYPE" "RAB11FIP5 WILD-TYPE" 
         TCGA-IB-7645          TCGA-IB-7646          TCGA-IB-7647 
"RAB11FIP5 WILD-TYPE" "RAB11FIP5 WILD-TYPE" "RAB11FIP5 WILD-TYPE" 
         TCGA-IB-7649          TCGA-IB-7651          TCGA-IB-7652 
"RAB11FIP5 WILD-TYPE" "RAB11FIP5 WILD-TYPE" "RAB11FIP5 WILD-TYPE" 
         TCGA-IB-7885          TCGA-IB-7886          TCGA-IB-7887 
"RAB11FIP5 WILD-TYPE" "RAB11FIP5 WILD-TYPE" "RAB11FIP5 WILD-TYPE" 
         TCGA-IB-7888          TCGA-IB-7889          TCGA-IB-7890 
  "RAB11FIP5 MUTATED" "RAB11FIP5 WILD-TYPE"   "RAB11FIP5 MUTATED" 
         TCGA-IB-7891          TCGA-IB-7893          TCGA-IB-7897 
"RAB11FIP5 WILD-TYPE" "RAB11FIP5 WILD-TYPE"   "RAB11FIP5 MUTATED" 
         TCGA-IB-8126          TCGA-IB-8127          TCGA-IB-A5SO 
"RAB11FIP5 WILD-TYPE" "RAB11FIP5 WILD-TYPE" "RAB11FIP5 WILD-TYPE" 
         TCGA-IB-A5SP          TCGA-IB-A5SQ          TCGA-IB-A5SS 
"RAB11FIP5 WILD-TYPE" "RAB11FIP5 WILD-TYPE" "RAB11FIP5 WILD-TYPE" 
         TCGA-IB-A5ST          TCGA-IB-A6UG          TCGA-LB-A7SX 
"RAB11FIP5 WILD-TYPE" "RAB11FIP5 WILD-TYPE" "RAB11FIP5 WILD-TYPE" 
         TCGA-OE-A75W          TCGA-PZ-A5RE          TCGA-Q3-A5QY 
"RAB11FIP5 WILD-TYPE" "RAB11FIP5 WILD-TYPE" "RAB11FIP5 WILD-TYPE" 
         TCGA-US-A779          TCGA-US-A77E          TCGA-US-A77J 
"RAB11FIP5 WILD-TYPE" "RAB11FIP5 WILD-TYPE" "RAB11FIP5 WILD-TYPE" 
         TCGA-F2-6879          TCGA-F2-6880          TCGA-F2-7273 
"RAB11FIP5 WILD-TYPE" "RAB11FIP5 WILD-TYPE" "RAB11FIP5 WILD-TYPE" 
         TCGA-F2-7276          TCGA-F2-A44G          TCGA-F2-A44H 
"RAB11FIP5 WILD-TYPE" "RAB11FIP5 WILD-TYPE" "RAB11FIP5 WILD-TYPE" 
         TCGA-FB-A4P5          TCGA-FB-A4P6          TCGA-FB-A545 
"RAB11FIP5 WILD-TYPE" "RAB11FIP5 WILD-TYPE" "RAB11FIP5 WILD-TYPE" 
         TCGA-FB-A5VM          TCGA-FB-A78T          TCGA-FB-A7DR 
"RAB11FIP5 WILD-TYPE" "RAB11FIP5 WILD-TYPE" "RAB11FIP5 WILD-TYPE" 
         TCGA-FZ-5920          TCGA-FZ-5922          TCGA-FZ-5923 
"RAB11FIP5 WILD-TYPE" "RAB11FIP5 WILD-TYPE" "RAB11FIP5 WILD-TYPE" 
         TCGA-H6-8124          TCGA-H6-A45N          TCGA-H8-A6C1 
"RAB11FIP5 WILD-TYPE" "RAB11FIP5 WILD-TYPE"   "RAB11FIP5 MUTATED" 
         TCGA-HZ-7289          TCGA-HZ-7918          TCGA-HZ-7919 
"RAB11FIP5 WILD-TYPE" "RAB11FIP5 WILD-TYPE" "RAB11FIP5 WILD-TYPE" 
         TCGA-HZ-7922          TCGA-HZ-7923          TCGA-HZ-7924 
"RAB11FIP5 WILD-TYPE" "RAB11FIP5 WILD-TYPE" "RAB11FIP5 WILD-TYPE" 
         TCGA-HZ-7925          TCGA-HZ-7926          TCGA-HZ-8001 
"RAB11FIP5 WILD-TYPE" "RAB11FIP5 WILD-TYPE" "RAB11FIP5 WILD-TYPE" 
         TCGA-HZ-8002          TCGA-HZ-8003          TCGA-HZ-8005 
  "RAB11FIP5 MUTATED"   "RAB11FIP5 MUTATED"   "RAB11FIP5 MUTATED" 
         TCGA-HZ-8315          TCGA-HZ-8317          TCGA-HZ-8636 
"RAB11FIP5 WILD-TYPE" "RAB11FIP5 WILD-TYPE" "RAB11FIP5 WILD-TYPE" 
         TCGA-HZ-8638          TCGA-HZ-A49G          TCGA-HZ-A49H 
"RAB11FIP5 WILD-TYPE" "RAB11FIP5 WILD-TYPE" "RAB11FIP5 WILD-TYPE" 
         TCGA-HZ-A4BH          TCGA-HZ-A4BK          TCGA-IB-7644 
"RAB11FIP5 WILD-TYPE" "RAB11FIP5 WILD-TYPE" "RAB11FIP5 WILD-TYPE" 
         TCGA-IB-7645          TCGA-IB-7646          TCGA-IB-7647 
"RAB11FIP5 WILD-TYPE" "RAB11FIP5 WILD-TYPE" "RAB11FIP5 WILD-TYPE" 
         TCGA-IB-7649          TCGA-IB-7651          TCGA-IB-7652 
"RAB11FIP5 WILD-TYPE" "RAB11FIP5 WILD-TYPE" "RAB11FIP5 WILD-TYPE" 
         TCGA-IB-7885          TCGA-IB-7886          TCGA-IB-7887 
"RAB11FIP5 WILD-TYPE" "RAB11FIP5 WILD-TYPE" "RAB11FIP5 WILD-TYPE" 
         TCGA-IB-7888          TCGA-IB-7889          TCGA-IB-7890 
  "RAB11FIP5 MUTATED" "RAB11FIP5 WILD-TYPE"   "RAB11FIP5 MUTATED" 
         TCGA-IB-7891          TCGA-IB-7893          TCGA-IB-7897 
"RAB11FIP5 WILD-TYPE" "RAB11FIP5 WILD-TYPE"   "RAB11FIP5 MUTATED" 
         TCGA-IB-8126          TCGA-IB-8127          TCGA-IB-A5SO 
"RAB11FIP5 WILD-TYPE" "RAB11FIP5 WILD-TYPE" "RAB11FIP5 WILD-TYPE" 
         TCGA-IB-A5SP          TCGA-IB-A5SQ          TCGA-IB-A5SS 
"RAB11FIP5 WILD-TYPE" "RAB11FIP5 WILD-TYPE" "RAB11FIP5 WILD-TYPE" 
         TCGA-IB-A5ST          TCGA-IB-A6UG          TCGA-LB-A7SX 
"RAB11FIP5 WILD-TYPE" "RAB11FIP5 WILD-TYPE" "RAB11FIP5 WILD-TYPE" 
         TCGA-OE-A75W          TCGA-PZ-A5RE          TCGA-Q3-A5QY 
"RAB11FIP5 WILD-TYPE" "RAB11FIP5 WILD-TYPE" "RAB11FIP5 WILD-TYPE" 
         TCGA-US-A779          TCGA-US-A77E          TCGA-US-A77J 
"RAB11FIP5 WILD-TYPE" "RAB11FIP5 WILD-TYPE" "RAB11FIP5 WILD-TYPE" 
         TCGA-F2-6879          TCGA-F2-6880          TCGA-F2-7273 
"RAB11FIP5 WILD-TYPE" "RAB11FIP5 WILD-TYPE" "RAB11FIP5 WILD-TYPE" 
         TCGA-F2-7276          TCGA-F2-A44G          TCGA-F2-A44H 
"RAB11FIP5 WILD-TYPE" "RAB11FIP5 WILD-TYPE" "RAB11FIP5 WILD-TYPE" 
         TCGA-FB-A4P5          TCGA-FB-A4P6          TCGA-FB-A545 
"RAB11FIP5 WILD-TYPE" "RAB11FIP5 WILD-TYPE" "RAB11FIP5 WILD-TYPE" 
         TCGA-FB-A5VM          TCGA-FB-A78T          TCGA-FB-A7DR 
"RAB11FIP5 WILD-TYPE" "RAB11FIP5 WILD-TYPE" "RAB11FIP5 WILD-TYPE" 
         TCGA-FZ-5920          TCGA-FZ-5922          TCGA-FZ-5923 
"RAB11FIP5 WILD-TYPE" "RAB11FIP5 WILD-TYPE" "RAB11FIP5 WILD-TYPE" 
         TCGA-H6-8124          TCGA-H6-A45N          TCGA-H8-A6C1 
"RAB11FIP5 WILD-TYPE" "RAB11FIP5 WILD-TYPE"   "RAB11FIP5 MUTATED" 
         TCGA-HZ-7289          TCGA-HZ-7918          TCGA-HZ-7919 
"RAB11FIP5 WILD-TYPE" "RAB11FIP5 WILD-TYPE" "RAB11FIP5 WILD-TYPE" 
         TCGA-HZ-7922          TCGA-HZ-7923          TCGA-HZ-7924 
"RAB11FIP5 WILD-TYPE" "RAB11FIP5 WILD-TYPE" "RAB11FIP5 WILD-TYPE" 
         TCGA-HZ-7925          TCGA-HZ-7926          TCGA-HZ-8001 
"RAB11FIP5 WILD-TYPE" "RAB11FIP5 WILD-TYPE" "RAB11FIP5 WILD-TYPE" 
         TCGA-HZ-8002          TCGA-HZ-8003          TCGA-HZ-8005 
  "RAB11FIP5 MUTATED"   "RAB11FIP5 MUTATED"   "RAB11FIP5 MUTATED" 
         TCGA-HZ-8315          TCGA-HZ-8317          TCGA-HZ-8636 
"RAB11FIP5 WILD-TYPE" "RAB11FIP5 WILD-TYPE" "RAB11FIP5 WILD-TYPE" 
         TCGA-HZ-8638          TCGA-HZ-A49G          TCGA-HZ-A49H 
"RAB11FIP5 WILD-TYPE" "RAB11FIP5 WILD-TYPE" "RAB11FIP5 WILD-TYPE" 
         TCGA-HZ-A4BH          TCGA-HZ-A4BK          TCGA-IB-7644 
"RAB11FIP5 WILD-TYPE" "RAB11FIP5 WILD-TYPE" "RAB11FIP5 WILD-TYPE" 
         TCGA-IB-7645          TCGA-IB-7646          TCGA-IB-7647 
"RAB11FIP5 WILD-TYPE" "RAB11FIP5 WILD-TYPE" "RAB11FIP5 WILD-TYPE" 
         TCGA-IB-7649          TCGA-IB-7651          TCGA-IB-7652 
"RAB11FIP5 WILD-TYPE" "RAB11FIP5 WILD-TYPE" "RAB11FIP5 WILD-TYPE" 
         TCGA-IB-7885          TCGA-IB-7886          TCGA-IB-7887 
"RAB11FIP5 WILD-TYPE" "RAB11FIP5 WILD-TYPE" "RAB11FIP5 WILD-TYPE" 
         TCGA-IB-7888          TCGA-IB-7889          TCGA-IB-7890 
  "RAB11FIP5 MUTATED" "RAB11FIP5 WILD-TYPE"   "RAB11FIP5 MUTATED" 
         TCGA-IB-7891          TCGA-IB-7893          TCGA-IB-7897 
"RAB11FIP5 WILD-TYPE" "RAB11FIP5 WILD-TYPE"   "RAB11FIP5 MUTATED" 
         TCGA-IB-8126          TCGA-IB-8127          TCGA-IB-A5SO 
"RAB11FIP5 WILD-TYPE" "RAB11FIP5 WILD-TYPE" "RAB11FIP5 WILD-TYPE" 
         TCGA-IB-A5SP          TCGA-IB-A5SQ          TCGA-IB-A5SS 
"RAB11FIP5 WILD-TYPE" "RAB11FIP5 WILD-TYPE" "RAB11FIP5 WILD-TYPE" 
         TCGA-IB-A5ST          TCGA-IB-A6UG          TCGA-LB-A7SX 
"RAB11FIP5 WILD-TYPE" "RAB11FIP5 WILD-TYPE" "RAB11FIP5 WILD-TYPE" 
         TCGA-OE-A75W          TCGA-PZ-A5RE          TCGA-Q3-A5QY 
"RAB11FIP5 WILD-TYPE" "RAB11FIP5 WILD-TYPE" "RAB11FIP5 WILD-TYPE" 
         TCGA-US-A779          TCGA-US-A77E          TCGA-US-A77J 
"RAB11FIP5 WILD-TYPE" "RAB11FIP5 WILD-TYPE" "RAB11FIP5 WILD-TYPE" 
[1] "hr=" "1.2"
D41V2, continuous
                     vv
clus                  STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  RAB11FIP5 MUTATED          0        1         2         4         0        0
  RAB11FIP5 WILD-TYPE        1        3         9        47         2        3
D41V3, multiclass
                     vv
clus                  T1+T2 T3+T4
  RAB11FIP5 MUTATED       1     6
  RAB11FIP5 WILD-TYPE     5    60
D41V4, multiclass
       clus
vv      RAB11FIP5 MUTATED RAB11FIP5 WILD-TYPE
  T1+T2                 1                   5
  T3+T4                 6                  60
D41V5, binary
                     cls
clus                   0  1
  RAB11FIP5 MUTATED    3  4
  RAB11FIP5 WILD-TYPE 14 50
[1] "tbl2"
                     cls
clus                  [,1] [,2]
  RAB11FIP5 MUTATED      3    4
  RAB11FIP5 WILD-TYPE   14   50
   clus
vv  RAB11FIP5 MUTATED RAB11FIP5 WILD-TYPE
  0                 3                  14
  1                 4                  50
                     vv
clus                  M0 M1 MX
  RAB11FIP5 MUTATED    3  0  4
  RAB11FIP5 WILD-TYPE 36  3 26
D41V6, multiclass
    clus
vv   RAB11FIP5 MUTATED RAB11FIP5 WILD-TYPE
  M0                 3                  36
  M1                 0                   3
  MX                 4                  26
D41V7, binary
                     cls
clus                   0  1
  RAB11FIP5 MUTATED    3  4
  RAB11FIP5 WILD-TYPE 33 32
[1] "tbl2"
                     cls
clus                  [,1] [,2]
  RAB11FIP5 MUTATED      3    4
  RAB11FIP5 WILD-TYPE   33   32
        clus
vv       RAB11FIP5 MUTATED RAB11FIP5 WILD-TYPE
  FEMALE                 3                  33
  MALE                   4                  32
                     vv
clus                  PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  RAB11FIP5 MUTATED                                     6
  RAB11FIP5 WILD-TYPE                                  59
                     vv
clus                  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  RAB11FIP5 MUTATED                                       1
  RAB11FIP5 WILD-TYPE                                     3
                     vv
clus                  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  RAB11FIP5 MUTATED                                                  0
  RAB11FIP5 WILD-TYPE                                                2
D41V8, multiclass
                                                  clus
vv                                                 RAB11FIP5 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                              6
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                            1
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                 0
                                                  clus
vv                                                 RAB11FIP5 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                               59
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                              3
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                   2
D41V9, continuous
[1] "Remove cluster labels:" "RAB11FIP5 MUTATED"     
clus
  RAB11FIP5 MUTATED RAB11FIP5 WILD-TYPE 
                  1                  21 
         TCGA-F2-6880          TCGA-FB-A4P5          TCGA-FB-A4P6 
"RAB11FIP5 WILD-TYPE" "RAB11FIP5 WILD-TYPE" "RAB11FIP5 WILD-TYPE" 
         TCGA-FB-A5VM          TCGA-FB-A78T          TCGA-FB-A7DR 
"RAB11FIP5 WILD-TYPE" "RAB11FIP5 WILD-TYPE" "RAB11FIP5 WILD-TYPE" 
         TCGA-H6-8124          TCGA-H6-A45N          TCGA-IB-7644 
"RAB11FIP5 WILD-TYPE" "RAB11FIP5 WILD-TYPE" "RAB11FIP5 WILD-TYPE" 
         TCGA-IB-7649          TCGA-IB-7651          TCGA-IB-7885 
"RAB11FIP5 WILD-TYPE" "RAB11FIP5 WILD-TYPE" "RAB11FIP5 WILD-TYPE" 
         TCGA-IB-7886          TCGA-IB-7887          TCGA-IB-7891 
"RAB11FIP5 WILD-TYPE" "RAB11FIP5 WILD-TYPE" "RAB11FIP5 WILD-TYPE" 
         TCGA-IB-8126          TCGA-IB-8127          TCGA-IB-A5SS 
"RAB11FIP5 WILD-TYPE" "RAB11FIP5 WILD-TYPE" "RAB11FIP5 WILD-TYPE" 
         TCGA-IB-A6UG          TCGA-LB-A7SX          TCGA-OE-A75W 
"RAB11FIP5 WILD-TYPE" "RAB11FIP5 WILD-TYPE" "RAB11FIP5 WILD-TYPE" 
D41V10, continuous
[1] "Remove cluster labels:" "RAB11FIP5 MUTATED"     
clus
  RAB11FIP5 MUTATED RAB11FIP5 WILD-TYPE 
                  1                  18 
         TCGA-FB-A4P5          TCGA-FB-A4P6          TCGA-FB-A5VM 
"RAB11FIP5 WILD-TYPE" "RAB11FIP5 WILD-TYPE" "RAB11FIP5 WILD-TYPE" 
         TCGA-FB-A78T          TCGA-FB-A7DR          TCGA-H6-8124 
"RAB11FIP5 WILD-TYPE" "RAB11FIP5 WILD-TYPE" "RAB11FIP5 WILD-TYPE" 
         TCGA-IB-7644          TCGA-IB-7649          TCGA-IB-7651 
"RAB11FIP5 WILD-TYPE" "RAB11FIP5 WILD-TYPE" "RAB11FIP5 WILD-TYPE" 
         TCGA-IB-7885          TCGA-IB-7886          TCGA-IB-7891 
"RAB11FIP5 WILD-TYPE" "RAB11FIP5 WILD-TYPE" "RAB11FIP5 WILD-TYPE" 
         TCGA-IB-8126          TCGA-IB-8127          TCGA-IB-A5SS 
"RAB11FIP5 WILD-TYPE" "RAB11FIP5 WILD-TYPE" "RAB11FIP5 WILD-TYPE" 
         TCGA-IB-A6UG          TCGA-LB-A7SX          TCGA-OE-A75W 
"RAB11FIP5 WILD-TYPE" "RAB11FIP5 WILD-TYPE" "RAB11FIP5 WILD-TYPE" 
                     vv
clus                  R0 R1 RX
  RAB11FIP5 MUTATED    6  1  0
  RAB11FIP5 WILD-TYPE 36 23  2
D41V11, multiclass
    clus
vv   RAB11FIP5 MUTATED RAB11FIP5 WILD-TYPE
  R0                 6                  36
  R1                 1                  23
  RX                 0                   2
D41V12, continuous

Clustering(42) Variable = DHRS7B MUTATION ANALYSIS
D42V1, survival
                  sevent
clus2               0  1
  DHRS7B MUTATED    4  0
  DHRS7B WILD-TYPE 36 29
  DHRS7B MUTATED DHRS7B WILD-TYPE 
               4               65 
  DHRS7B MUTATED DHRS7B WILD-TYPE 
               0               29 
$`DHRS7B MUTATED`
TCGA-HZ-7919 TCGA-HZ-7924 TCGA-HZ-7926 TCGA-HZ-A49H 
        0.66        12.13         0.26         0.95 

$`DHRS7B WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P5 TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR 
        0.13        11.93        12.66         2.47         0.03         5.46 
TCGA-FZ-5920 TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 
        2.01        36.20        20.81        12.89         7.66        13.02 
TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7925 TCGA-HZ-8001 
        7.89         0.92         0.13         0.26        11.87         0.62 
TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8636 
        0.79         0.69         3.95         0.92         0.53         0.16 
TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7645 
        2.99         0.76         6.38         1.51        11.41        49.38 
TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7651 TCGA-IB-7652 TCGA-IB-7885 
        4.77        21.90        15.35        19.82        15.65        27.98 
TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 
        4.04         3.62        43.79        15.81        19.66        16.04 
TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP 
        3.85        15.98         0.56        17.16        10.82         9.86 
TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W 
        7.20        15.12         0.26         1.35         4.18         3.62 
TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
        8.12        13.68        16.80        14.14        18.67 

  DHRS7B MUTATED DHRS7B WILD-TYPE 
            0.26             0.03 
  DHRS7B MUTATED DHRS7B WILD-TYPE 
           12.13            49.38 
  DHRS7B MUTATED DHRS7B WILD-TYPE 
           0.805            7.890 
[1] "0.3 - 12.1 (0.8)" "0.0 - 49.4 (7.9)"
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
"DHRS7B WILD-TYPE" "DHRS7B WILD-TYPE" "DHRS7B WILD-TYPE" "DHRS7B WILD-TYPE" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"DHRS7B WILD-TYPE" "DHRS7B WILD-TYPE" "DHRS7B WILD-TYPE" "DHRS7B WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
"DHRS7B WILD-TYPE" "DHRS7B WILD-TYPE" "DHRS7B WILD-TYPE" "DHRS7B WILD-TYPE" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"DHRS7B WILD-TYPE" "DHRS7B WILD-TYPE" "DHRS7B WILD-TYPE" "DHRS7B WILD-TYPE" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
"DHRS7B WILD-TYPE" "DHRS7B WILD-TYPE" "DHRS7B WILD-TYPE" "DHRS7B WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
  "DHRS7B MUTATED" "DHRS7B WILD-TYPE" "DHRS7B WILD-TYPE"   "DHRS7B MUTATED" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"DHRS7B WILD-TYPE"   "DHRS7B MUTATED" "DHRS7B WILD-TYPE" "DHRS7B WILD-TYPE" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
"DHRS7B WILD-TYPE" "DHRS7B WILD-TYPE" "DHRS7B WILD-TYPE" "DHRS7B WILD-TYPE" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
"DHRS7B WILD-TYPE" "DHRS7B WILD-TYPE" "DHRS7B WILD-TYPE"   "DHRS7B MUTATED" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
"DHRS7B WILD-TYPE" "DHRS7B WILD-TYPE" "DHRS7B WILD-TYPE" "DHRS7B WILD-TYPE" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
"DHRS7B WILD-TYPE" "DHRS7B WILD-TYPE" "DHRS7B WILD-TYPE" "DHRS7B WILD-TYPE" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
"DHRS7B WILD-TYPE" "DHRS7B WILD-TYPE" "DHRS7B WILD-TYPE" "DHRS7B WILD-TYPE" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
"DHRS7B WILD-TYPE" "DHRS7B WILD-TYPE" "DHRS7B WILD-TYPE" "DHRS7B WILD-TYPE" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
"DHRS7B WILD-TYPE" "DHRS7B WILD-TYPE" "DHRS7B WILD-TYPE" "DHRS7B WILD-TYPE" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"DHRS7B WILD-TYPE" "DHRS7B WILD-TYPE" "DHRS7B WILD-TYPE" "DHRS7B WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"DHRS7B WILD-TYPE" "DHRS7B WILD-TYPE" "DHRS7B WILD-TYPE" "DHRS7B WILD-TYPE" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
"DHRS7B WILD-TYPE" "DHRS7B WILD-TYPE" "DHRS7B WILD-TYPE" "DHRS7B WILD-TYPE" 
      TCGA-US-A77J 
"DHRS7B WILD-TYPE" 
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
"DHRS7B WILD-TYPE" "DHRS7B WILD-TYPE" "DHRS7B WILD-TYPE" "DHRS7B WILD-TYPE" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"DHRS7B WILD-TYPE" "DHRS7B WILD-TYPE" "DHRS7B WILD-TYPE" "DHRS7B WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
"DHRS7B WILD-TYPE" "DHRS7B WILD-TYPE" "DHRS7B WILD-TYPE" "DHRS7B WILD-TYPE" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"DHRS7B WILD-TYPE" "DHRS7B WILD-TYPE" "DHRS7B WILD-TYPE" "DHRS7B WILD-TYPE" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
"DHRS7B WILD-TYPE" "DHRS7B WILD-TYPE" "DHRS7B WILD-TYPE" "DHRS7B WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
  "DHRS7B MUTATED" "DHRS7B WILD-TYPE" "DHRS7B WILD-TYPE"   "DHRS7B MUTATED" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"DHRS7B WILD-TYPE"   "DHRS7B MUTATED" "DHRS7B WILD-TYPE" "DHRS7B WILD-TYPE" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
"DHRS7B WILD-TYPE" "DHRS7B WILD-TYPE" "DHRS7B WILD-TYPE" "DHRS7B WILD-TYPE" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
"DHRS7B WILD-TYPE" "DHRS7B WILD-TYPE" "DHRS7B WILD-TYPE"   "DHRS7B MUTATED" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
"DHRS7B WILD-TYPE" "DHRS7B WILD-TYPE" "DHRS7B WILD-TYPE" "DHRS7B WILD-TYPE" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
"DHRS7B WILD-TYPE" "DHRS7B WILD-TYPE" "DHRS7B WILD-TYPE" "DHRS7B WILD-TYPE" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
"DHRS7B WILD-TYPE" "DHRS7B WILD-TYPE" "DHRS7B WILD-TYPE" "DHRS7B WILD-TYPE" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
"DHRS7B WILD-TYPE" "DHRS7B WILD-TYPE" "DHRS7B WILD-TYPE" "DHRS7B WILD-TYPE" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
"DHRS7B WILD-TYPE" "DHRS7B WILD-TYPE" "DHRS7B WILD-TYPE" "DHRS7B WILD-TYPE" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"DHRS7B WILD-TYPE" "DHRS7B WILD-TYPE" "DHRS7B WILD-TYPE" "DHRS7B WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"DHRS7B WILD-TYPE" "DHRS7B WILD-TYPE" "DHRS7B WILD-TYPE" "DHRS7B WILD-TYPE" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
"DHRS7B WILD-TYPE" "DHRS7B WILD-TYPE" "DHRS7B WILD-TYPE" "DHRS7B WILD-TYPE" 
      TCGA-US-A77J 
"DHRS7B WILD-TYPE" 
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
"DHRS7B WILD-TYPE" "DHRS7B WILD-TYPE" "DHRS7B WILD-TYPE" "DHRS7B WILD-TYPE" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"DHRS7B WILD-TYPE" "DHRS7B WILD-TYPE" "DHRS7B WILD-TYPE" "DHRS7B WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
"DHRS7B WILD-TYPE" "DHRS7B WILD-TYPE" "DHRS7B WILD-TYPE" "DHRS7B WILD-TYPE" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"DHRS7B WILD-TYPE" "DHRS7B WILD-TYPE" "DHRS7B WILD-TYPE" "DHRS7B WILD-TYPE" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
"DHRS7B WILD-TYPE" "DHRS7B WILD-TYPE" "DHRS7B WILD-TYPE" "DHRS7B WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
  "DHRS7B MUTATED" "DHRS7B WILD-TYPE" "DHRS7B WILD-TYPE"   "DHRS7B MUTATED" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"DHRS7B WILD-TYPE"   "DHRS7B MUTATED" "DHRS7B WILD-TYPE" "DHRS7B WILD-TYPE" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
"DHRS7B WILD-TYPE" "DHRS7B WILD-TYPE" "DHRS7B WILD-TYPE" "DHRS7B WILD-TYPE" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
"DHRS7B WILD-TYPE" "DHRS7B WILD-TYPE" "DHRS7B WILD-TYPE"   "DHRS7B MUTATED" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
"DHRS7B WILD-TYPE" "DHRS7B WILD-TYPE" "DHRS7B WILD-TYPE" "DHRS7B WILD-TYPE" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
"DHRS7B WILD-TYPE" "DHRS7B WILD-TYPE" "DHRS7B WILD-TYPE" "DHRS7B WILD-TYPE" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
"DHRS7B WILD-TYPE" "DHRS7B WILD-TYPE" "DHRS7B WILD-TYPE" "DHRS7B WILD-TYPE" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
"DHRS7B WILD-TYPE" "DHRS7B WILD-TYPE" "DHRS7B WILD-TYPE" "DHRS7B WILD-TYPE" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
"DHRS7B WILD-TYPE" "DHRS7B WILD-TYPE" "DHRS7B WILD-TYPE" "DHRS7B WILD-TYPE" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"DHRS7B WILD-TYPE" "DHRS7B WILD-TYPE" "DHRS7B WILD-TYPE" "DHRS7B WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"DHRS7B WILD-TYPE" "DHRS7B WILD-TYPE" "DHRS7B WILD-TYPE" "DHRS7B WILD-TYPE" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
"DHRS7B WILD-TYPE" "DHRS7B WILD-TYPE" "DHRS7B WILD-TYPE" "DHRS7B WILD-TYPE" 
      TCGA-US-A77J 
"DHRS7B WILD-TYPE" 
[1] "hr="     "9400000"
D42V2, continuous
                  vv
clus               STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  DHRS7B MUTATED          0        0         1         3         0        0
  DHRS7B WILD-TYPE        1        4        10        48         2        3
D42V3, multiclass
                  vv
clus               T1+T2 T3+T4
  DHRS7B MUTATED       0     4
  DHRS7B WILD-TYPE     6    62
D42V4, multiclass
       clus
vv      DHRS7B MUTATED DHRS7B WILD-TYPE
  T1+T2              0                6
  T3+T4              4               62
D42V5, binary
                  cls
clus                0  1
  DHRS7B MUTATED    1  3
  DHRS7B WILD-TYPE 16 51
[1] "tbl2"
                  cls
clus               [,1] [,2]
  DHRS7B MUTATED      1    3
  DHRS7B WILD-TYPE   16   51
   clus
vv  DHRS7B MUTATED DHRS7B WILD-TYPE
  0              1               16
  1              3               51
                  vv
clus               M0 M1 MX
  DHRS7B MUTATED    1  0  3
  DHRS7B WILD-TYPE 38  3 27
D42V6, multiclass
    clus
vv   DHRS7B MUTATED DHRS7B WILD-TYPE
  M0              1               38
  M1              0                3
  MX              3               27
D42V7, binary
                  cls
clus                0  1
  DHRS7B MUTATED    3  1
  DHRS7B WILD-TYPE 33 35
[1] "tbl2"
                  cls
clus               [,1] [,2]
  DHRS7B MUTATED      3    1
  DHRS7B WILD-TYPE   33   35
        clus
vv       DHRS7B MUTATED DHRS7B WILD-TYPE
  FEMALE              3               33
  MALE                1               35
                  vv
clus               PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  DHRS7B MUTATED                                     4
  DHRS7B WILD-TYPE                                  61
                  vv
clus               PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  DHRS7B MUTATED                                       0
  DHRS7B WILD-TYPE                                     4
                  vv
clus               PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  DHRS7B MUTATED                                                  0
  DHRS7B WILD-TYPE                                                2
D42V8, multiclass
                                                  clus
vv                                                 DHRS7B MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                           4
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                         0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA              0
                                                  clus
vv                                                 DHRS7B WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                            61
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                           4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                2
D42V9, continuous
D42V10, continuous
                  vv
clus               R0 R1 RX
  DHRS7B MUTATED    2  1  1
  DHRS7B WILD-TYPE 40 23  1
D42V11, multiclass
    clus
vv   DHRS7B MUTATED DHRS7B WILD-TYPE
  R0              2               40
  R1              1               23
  RX              1                1
D42V12, continuous

Clustering(43) Variable = PAK1 MUTATION ANALYSIS
D43V1, survival
                sevent
clus2             0  1
  PAK1 MUTATED    7  0
  PAK1 WILD-TYPE 33 29
  PAK1 MUTATED PAK1 WILD-TYPE 
             7             62 
  PAK1 MUTATED PAK1 WILD-TYPE 
             0             29 
$`PAK1 MUTATED`
TCGA-F2-A44H TCGA-FB-A4P6 TCGA-FB-A7DR TCGA-H6-8124 TCGA-HZ-7919 TCGA-HZ-8315 
       19.27        11.93         5.46        12.89         0.66         0.92 
TCGA-HZ-A4BH 
        6.38 

$`PAK1 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-FB-A4P5 
       10.98         9.70        11.84         7.10         5.03         0.13 
TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FZ-5920 TCGA-FZ-5922 TCGA-FZ-5923 
       12.66         2.47         0.03         2.01        36.20        20.81 
TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-7922 TCGA-HZ-7923 
        7.66        13.02         7.89         0.92         0.13         0.26 
TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 
       12.13        11.87         0.26         0.62         0.79         0.69 
TCGA-HZ-8005 TCGA-HZ-8317 TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H 
        3.95         0.53         0.16         2.99         0.76         0.95 
TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 
        1.51        11.41        49.38         4.77        21.90        15.35 
TCGA-IB-7651 TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7888 
       19.82        15.65        27.98         4.04         3.62        43.79 
TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-8126 
       15.81        19.66        16.04         3.85        15.98         0.56 
TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST 
       17.16        10.82         9.86         7.20        15.12         0.26 
TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 
        1.35         4.18         3.62         8.12        13.68        16.80 
TCGA-US-A77E TCGA-US-A77J 
       14.14        18.67 

  PAK1 MUTATED PAK1 WILD-TYPE 
          0.66           0.03 
  PAK1 MUTATED PAK1 WILD-TYPE 
         19.27          49.38 
  PAK1 MUTATED PAK1 WILD-TYPE 
         6.380          7.775 
[1] "0.7 - 19.3 (6.4)" "0.0 - 49.4 (7.8)"
    TCGA-F2-6879     TCGA-F2-6880     TCGA-F2-7273     TCGA-F2-7276 
"PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" 
    TCGA-F2-A44G     TCGA-F2-A44H     TCGA-FB-A4P5     TCGA-FB-A4P6 
"PAK1 WILD-TYPE"   "PAK1 MUTATED" "PAK1 WILD-TYPE"   "PAK1 MUTATED" 
    TCGA-FB-A545     TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-FB-A7DR 
"PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE"   "PAK1 MUTATED" 
    TCGA-FZ-5920     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-H6-8124 
"PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE"   "PAK1 MUTATED" 
    TCGA-H6-A45N     TCGA-H8-A6C1     TCGA-HZ-7289     TCGA-HZ-7918 
"PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" 
    TCGA-HZ-7919     TCGA-HZ-7922     TCGA-HZ-7923     TCGA-HZ-7924 
  "PAK1 MUTATED" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" 
    TCGA-HZ-7925     TCGA-HZ-7926     TCGA-HZ-8001     TCGA-HZ-8002 
"PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" 
    TCGA-HZ-8003     TCGA-HZ-8005     TCGA-HZ-8315     TCGA-HZ-8317 
"PAK1 WILD-TYPE" "PAK1 WILD-TYPE"   "PAK1 MUTATED" "PAK1 WILD-TYPE" 
    TCGA-HZ-8636     TCGA-HZ-8638     TCGA-HZ-A49G     TCGA-HZ-A49H 
"PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" 
    TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-IB-7644     TCGA-IB-7645 
  "PAK1 MUTATED" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" 
    TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7651 
"PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887 
"PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" 
    TCGA-IB-7888     TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891 
"PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" 
    TCGA-IB-7893     TCGA-IB-7897     TCGA-IB-8126     TCGA-IB-8127 
"PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" 
    TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS 
"PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" 
    TCGA-IB-A5ST     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
"PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" 
    TCGA-PZ-A5RE     TCGA-Q3-A5QY     TCGA-US-A779     TCGA-US-A77E 
"PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" 
    TCGA-US-A77J 
"PAK1 WILD-TYPE" 
    TCGA-F2-6879     TCGA-F2-6880     TCGA-F2-7273     TCGA-F2-7276 
"PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" 
    TCGA-F2-A44G     TCGA-F2-A44H     TCGA-FB-A4P5     TCGA-FB-A4P6 
"PAK1 WILD-TYPE"   "PAK1 MUTATED" "PAK1 WILD-TYPE"   "PAK1 MUTATED" 
    TCGA-FB-A545     TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-FB-A7DR 
"PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE"   "PAK1 MUTATED" 
    TCGA-FZ-5920     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-H6-8124 
"PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE"   "PAK1 MUTATED" 
    TCGA-H6-A45N     TCGA-H8-A6C1     TCGA-HZ-7289     TCGA-HZ-7918 
"PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" 
    TCGA-HZ-7919     TCGA-HZ-7922     TCGA-HZ-7923     TCGA-HZ-7924 
  "PAK1 MUTATED" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" 
    TCGA-HZ-7925     TCGA-HZ-7926     TCGA-HZ-8001     TCGA-HZ-8002 
"PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" 
    TCGA-HZ-8003     TCGA-HZ-8005     TCGA-HZ-8315     TCGA-HZ-8317 
"PAK1 WILD-TYPE" "PAK1 WILD-TYPE"   "PAK1 MUTATED" "PAK1 WILD-TYPE" 
    TCGA-HZ-8636     TCGA-HZ-8638     TCGA-HZ-A49G     TCGA-HZ-A49H 
"PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" 
    TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-IB-7644     TCGA-IB-7645 
  "PAK1 MUTATED" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" 
    TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7651 
"PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887 
"PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" 
    TCGA-IB-7888     TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891 
"PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" 
    TCGA-IB-7893     TCGA-IB-7897     TCGA-IB-8126     TCGA-IB-8127 
"PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" 
    TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS 
"PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" 
    TCGA-IB-A5ST     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
"PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" 
    TCGA-PZ-A5RE     TCGA-Q3-A5QY     TCGA-US-A779     TCGA-US-A77E 
"PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" 
    TCGA-US-A77J 
"PAK1 WILD-TYPE" 
    TCGA-F2-6879     TCGA-F2-6880     TCGA-F2-7273     TCGA-F2-7276 
"PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" 
    TCGA-F2-A44G     TCGA-F2-A44H     TCGA-FB-A4P5     TCGA-FB-A4P6 
"PAK1 WILD-TYPE"   "PAK1 MUTATED" "PAK1 WILD-TYPE"   "PAK1 MUTATED" 
    TCGA-FB-A545     TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-FB-A7DR 
"PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE"   "PAK1 MUTATED" 
    TCGA-FZ-5920     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-H6-8124 
"PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE"   "PAK1 MUTATED" 
    TCGA-H6-A45N     TCGA-H8-A6C1     TCGA-HZ-7289     TCGA-HZ-7918 
"PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" 
    TCGA-HZ-7919     TCGA-HZ-7922     TCGA-HZ-7923     TCGA-HZ-7924 
  "PAK1 MUTATED" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" 
    TCGA-HZ-7925     TCGA-HZ-7926     TCGA-HZ-8001     TCGA-HZ-8002 
"PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" 
    TCGA-HZ-8003     TCGA-HZ-8005     TCGA-HZ-8315     TCGA-HZ-8317 
"PAK1 WILD-TYPE" "PAK1 WILD-TYPE"   "PAK1 MUTATED" "PAK1 WILD-TYPE" 
    TCGA-HZ-8636     TCGA-HZ-8638     TCGA-HZ-A49G     TCGA-HZ-A49H 
"PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" 
    TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-IB-7644     TCGA-IB-7645 
  "PAK1 MUTATED" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" 
    TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7651 
"PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887 
"PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" 
    TCGA-IB-7888     TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891 
"PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" 
    TCGA-IB-7893     TCGA-IB-7897     TCGA-IB-8126     TCGA-IB-8127 
"PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" 
    TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS 
"PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" 
    TCGA-IB-A5ST     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
"PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" 
    TCGA-PZ-A5RE     TCGA-Q3-A5QY     TCGA-US-A779     TCGA-US-A77E 
"PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" "PAK1 WILD-TYPE" 
    TCGA-US-A77J 
"PAK1 WILD-TYPE" 
[1] "hr="     "7.7e+07"
D43V2, continuous
                vv
clus             STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  PAK1 MUTATED          0        0         3         4         0        0
  PAK1 WILD-TYPE        1        4         8        47         2        3
D43V3, multiclass
                vv
clus             T1+T2 T3+T4
  PAK1 MUTATED       0     7
  PAK1 WILD-TYPE     6    59
D43V4, multiclass
       clus
vv      PAK1 MUTATED PAK1 WILD-TYPE
  T1+T2            0              6
  T3+T4            7             59
D43V5, binary
                cls
clus              0  1
  PAK1 MUTATED    2  4
  PAK1 WILD-TYPE 15 50
[1] "tbl2"
                cls
clus             [,1] [,2]
  PAK1 MUTATED      2    4
  PAK1 WILD-TYPE   15   50
   clus
vv  PAK1 MUTATED PAK1 WILD-TYPE
  0            2             15
  1            4             50
                vv
clus             M0 M1 MX
  PAK1 MUTATED    4  0  3
  PAK1 WILD-TYPE 35  3 27
D43V6, multiclass
    clus
vv   PAK1 MUTATED PAK1 WILD-TYPE
  M0            4             35
  M1            0              3
  MX            3             27
D43V7, binary
                cls
clus              0  1
  PAK1 MUTATED    3  4
  PAK1 WILD-TYPE 33 32
[1] "tbl2"
                cls
clus             [,1] [,2]
  PAK1 MUTATED      3    4
  PAK1 WILD-TYPE   33   32
        clus
vv       PAK1 MUTATED PAK1 WILD-TYPE
  FEMALE            3             33
  MALE              4             32
                vv
clus             PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  PAK1 MUTATED                                     6
  PAK1 WILD-TYPE                                  59
                vv
clus             PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  PAK1 MUTATED                                       0
  PAK1 WILD-TYPE                                     4
                vv
clus             PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  PAK1 MUTATED                                                  1
  PAK1 WILD-TYPE                                                1
D43V8, multiclass
                                                  clus
vv                                                 PAK1 MUTATED PAK1 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                         6             59
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                       0              4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA            1              1
D43V9, continuous
D43V10, continuous
                vv
clus             R0 R1 RX
  PAK1 MUTATED    3  3  0
  PAK1 WILD-TYPE 39 21  2
D43V11, multiclass
    clus
vv   PAK1 MUTATED PAK1 WILD-TYPE
  R0            3             39
  R1            3             21
  RX            0              2
D43V12, continuous

Clustering(44) Variable = FYN MUTATION ANALYSIS
D44V1, survival
               sevent
clus2            0  1
  FYN MUTATED    7  0
  FYN WILD-TYPE 33 29
  FYN MUTATED FYN WILD-TYPE 
            7            62 
  FYN MUTATED FYN WILD-TYPE 
            0            29 
$`FYN MUTATED`
TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8636 TCGA-HZ-8638 
        0.26         0.62         0.79         0.69         0.16         2.99 
TCGA-HZ-A4BH 
        6.38 

$`FYN WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P5 TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR 
        0.13        11.93        12.66         2.47         0.03         5.46 
TCGA-FZ-5920 TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 
        2.01        36.20        20.81        12.89         7.66        13.02 
TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 
        7.89         0.92         0.66         0.13         0.26        12.13 
TCGA-HZ-7925 TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-A49G TCGA-HZ-A49H 
       11.87         3.95         0.92         0.53         0.76         0.95 
TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 
        1.51        11.41        49.38         4.77        21.90        15.35 
TCGA-IB-7651 TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7888 
       19.82        15.65        27.98         4.04         3.62        43.79 
TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-8126 
       15.81        19.66        16.04         3.85        15.98         0.56 
TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST 
       17.16        10.82         9.86         7.20        15.12         0.26 
TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 
        1.35         4.18         3.62         8.12        13.68        16.80 
TCGA-US-A77E TCGA-US-A77J 
       14.14        18.67 

  FYN MUTATED FYN WILD-TYPE 
         0.16          0.03 
  FYN MUTATED FYN WILD-TYPE 
         6.38         49.38 
  FYN MUTATED FYN WILD-TYPE 
         0.69          9.78 
[1] "0.2 - 6.4 (0.7)"  "0.0 - 49.4 (9.8)"
   TCGA-F2-6879    TCGA-F2-6880    TCGA-F2-7273    TCGA-F2-7276    TCGA-F2-A44G 
"FYN WILD-TYPE" "FYN WILD-TYPE" "FYN WILD-TYPE" "FYN WILD-TYPE" "FYN WILD-TYPE" 
   TCGA-F2-A44H    TCGA-FB-A4P5    TCGA-FB-A4P6    TCGA-FB-A545    TCGA-FB-A5VM 
"FYN WILD-TYPE" "FYN WILD-TYPE" "FYN WILD-TYPE" "FYN WILD-TYPE" "FYN WILD-TYPE" 
   TCGA-FB-A78T    TCGA-FB-A7DR    TCGA-FZ-5920    TCGA-FZ-5922    TCGA-FZ-5923 
"FYN WILD-TYPE" "FYN WILD-TYPE" "FYN WILD-TYPE" "FYN WILD-TYPE" "FYN WILD-TYPE" 
   TCGA-H6-8124    TCGA-H6-A45N    TCGA-H8-A6C1    TCGA-HZ-7289    TCGA-HZ-7918 
"FYN WILD-TYPE" "FYN WILD-TYPE" "FYN WILD-TYPE" "FYN WILD-TYPE" "FYN WILD-TYPE" 
   TCGA-HZ-7919    TCGA-HZ-7922    TCGA-HZ-7923    TCGA-HZ-7924    TCGA-HZ-7925 
"FYN WILD-TYPE" "FYN WILD-TYPE" "FYN WILD-TYPE" "FYN WILD-TYPE" "FYN WILD-TYPE" 
   TCGA-HZ-7926    TCGA-HZ-8001    TCGA-HZ-8002    TCGA-HZ-8003    TCGA-HZ-8005 
  "FYN MUTATED"   "FYN MUTATED"   "FYN MUTATED"   "FYN MUTATED" "FYN WILD-TYPE" 
   TCGA-HZ-8315    TCGA-HZ-8317    TCGA-HZ-8636    TCGA-HZ-8638    TCGA-HZ-A49G 
"FYN WILD-TYPE" "FYN WILD-TYPE"   "FYN MUTATED"   "FYN MUTATED" "FYN WILD-TYPE" 
   TCGA-HZ-A49H    TCGA-HZ-A4BH    TCGA-HZ-A4BK    TCGA-IB-7644    TCGA-IB-7645 
"FYN WILD-TYPE"   "FYN MUTATED" "FYN WILD-TYPE" "FYN WILD-TYPE" "FYN WILD-TYPE" 
   TCGA-IB-7646    TCGA-IB-7647    TCGA-IB-7649    TCGA-IB-7651    TCGA-IB-7652 
"FYN WILD-TYPE" "FYN WILD-TYPE" "FYN WILD-TYPE" "FYN WILD-TYPE" "FYN WILD-TYPE" 
   TCGA-IB-7885    TCGA-IB-7886    TCGA-IB-7887    TCGA-IB-7888    TCGA-IB-7889 
"FYN WILD-TYPE" "FYN WILD-TYPE" "FYN WILD-TYPE" "FYN WILD-TYPE" "FYN WILD-TYPE" 
   TCGA-IB-7890    TCGA-IB-7891    TCGA-IB-7893    TCGA-IB-7897    TCGA-IB-8126 
"FYN WILD-TYPE" "FYN WILD-TYPE" "FYN WILD-TYPE" "FYN WILD-TYPE" "FYN WILD-TYPE" 
   TCGA-IB-8127    TCGA-IB-A5SO    TCGA-IB-A5SP    TCGA-IB-A5SQ    TCGA-IB-A5SS 
"FYN WILD-TYPE" "FYN WILD-TYPE" "FYN WILD-TYPE" "FYN WILD-TYPE" "FYN WILD-TYPE" 
   TCGA-IB-A5ST    TCGA-IB-A6UG    TCGA-LB-A7SX    TCGA-OE-A75W    TCGA-PZ-A5RE 
"FYN WILD-TYPE" "FYN WILD-TYPE" "FYN WILD-TYPE" "FYN WILD-TYPE" "FYN WILD-TYPE" 
   TCGA-Q3-A5QY    TCGA-US-A779    TCGA-US-A77E    TCGA-US-A77J 
"FYN WILD-TYPE" "FYN WILD-TYPE" "FYN WILD-TYPE" "FYN WILD-TYPE" 
   TCGA-F2-6879    TCGA-F2-6880    TCGA-F2-7273    TCGA-F2-7276    TCGA-F2-A44G 
"FYN WILD-TYPE" "FYN WILD-TYPE" "FYN WILD-TYPE" "FYN WILD-TYPE" "FYN WILD-TYPE" 
   TCGA-F2-A44H    TCGA-FB-A4P5    TCGA-FB-A4P6    TCGA-FB-A545    TCGA-FB-A5VM 
"FYN WILD-TYPE" "FYN WILD-TYPE" "FYN WILD-TYPE" "FYN WILD-TYPE" "FYN WILD-TYPE" 
   TCGA-FB-A78T    TCGA-FB-A7DR    TCGA-FZ-5920    TCGA-FZ-5922    TCGA-FZ-5923 
"FYN WILD-TYPE" "FYN WILD-TYPE" "FYN WILD-TYPE" "FYN WILD-TYPE" "FYN WILD-TYPE" 
   TCGA-H6-8124    TCGA-H6-A45N    TCGA-H8-A6C1    TCGA-HZ-7289    TCGA-HZ-7918 
"FYN WILD-TYPE" "FYN WILD-TYPE" "FYN WILD-TYPE" "FYN WILD-TYPE" "FYN WILD-TYPE" 
   TCGA-HZ-7919    TCGA-HZ-7922    TCGA-HZ-7923    TCGA-HZ-7924    TCGA-HZ-7925 
"FYN WILD-TYPE" "FYN WILD-TYPE" "FYN WILD-TYPE" "FYN WILD-TYPE" "FYN WILD-TYPE" 
   TCGA-HZ-7926    TCGA-HZ-8001    TCGA-HZ-8002    TCGA-HZ-8003    TCGA-HZ-8005 
  "FYN MUTATED"   "FYN MUTATED"   "FYN MUTATED"   "FYN MUTATED" "FYN WILD-TYPE" 
   TCGA-HZ-8315    TCGA-HZ-8317    TCGA-HZ-8636    TCGA-HZ-8638    TCGA-HZ-A49G 
"FYN WILD-TYPE" "FYN WILD-TYPE"   "FYN MUTATED"   "FYN MUTATED" "FYN WILD-TYPE" 
   TCGA-HZ-A49H    TCGA-HZ-A4BH    TCGA-HZ-A4BK    TCGA-IB-7644    TCGA-IB-7645 
"FYN WILD-TYPE"   "FYN MUTATED" "FYN WILD-TYPE" "FYN WILD-TYPE" "FYN WILD-TYPE" 
   TCGA-IB-7646    TCGA-IB-7647    TCGA-IB-7649    TCGA-IB-7651    TCGA-IB-7652 
"FYN WILD-TYPE" "FYN WILD-TYPE" "FYN WILD-TYPE" "FYN WILD-TYPE" "FYN WILD-TYPE" 
   TCGA-IB-7885    TCGA-IB-7886    TCGA-IB-7887    TCGA-IB-7888    TCGA-IB-7889 
"FYN WILD-TYPE" "FYN WILD-TYPE" "FYN WILD-TYPE" "FYN WILD-TYPE" "FYN WILD-TYPE" 
   TCGA-IB-7890    TCGA-IB-7891    TCGA-IB-7893    TCGA-IB-7897    TCGA-IB-8126 
"FYN WILD-TYPE" "FYN WILD-TYPE" "FYN WILD-TYPE" "FYN WILD-TYPE" "FYN WILD-TYPE" 
   TCGA-IB-8127    TCGA-IB-A5SO    TCGA-IB-A5SP    TCGA-IB-A5SQ    TCGA-IB-A5SS 
"FYN WILD-TYPE" "FYN WILD-TYPE" "FYN WILD-TYPE" "FYN WILD-TYPE" "FYN WILD-TYPE" 
   TCGA-IB-A5ST    TCGA-IB-A6UG    TCGA-LB-A7SX    TCGA-OE-A75W    TCGA-PZ-A5RE 
"FYN WILD-TYPE" "FYN WILD-TYPE" "FYN WILD-TYPE" "FYN WILD-TYPE" "FYN WILD-TYPE" 
   TCGA-Q3-A5QY    TCGA-US-A779    TCGA-US-A77E    TCGA-US-A77J 
"FYN WILD-TYPE" "FYN WILD-TYPE" "FYN WILD-TYPE" "FYN WILD-TYPE" 
   TCGA-F2-6879    TCGA-F2-6880    TCGA-F2-7273    TCGA-F2-7276    TCGA-F2-A44G 
"FYN WILD-TYPE" "FYN WILD-TYPE" "FYN WILD-TYPE" "FYN WILD-TYPE" "FYN WILD-TYPE" 
   TCGA-F2-A44H    TCGA-FB-A4P5    TCGA-FB-A4P6    TCGA-FB-A545    TCGA-FB-A5VM 
"FYN WILD-TYPE" "FYN WILD-TYPE" "FYN WILD-TYPE" "FYN WILD-TYPE" "FYN WILD-TYPE" 
   TCGA-FB-A78T    TCGA-FB-A7DR    TCGA-FZ-5920    TCGA-FZ-5922    TCGA-FZ-5923 
"FYN WILD-TYPE" "FYN WILD-TYPE" "FYN WILD-TYPE" "FYN WILD-TYPE" "FYN WILD-TYPE" 
   TCGA-H6-8124    TCGA-H6-A45N    TCGA-H8-A6C1    TCGA-HZ-7289    TCGA-HZ-7918 
"FYN WILD-TYPE" "FYN WILD-TYPE" "FYN WILD-TYPE" "FYN WILD-TYPE" "FYN WILD-TYPE" 
   TCGA-HZ-7919    TCGA-HZ-7922    TCGA-HZ-7923    TCGA-HZ-7924    TCGA-HZ-7925 
"FYN WILD-TYPE" "FYN WILD-TYPE" "FYN WILD-TYPE" "FYN WILD-TYPE" "FYN WILD-TYPE" 
   TCGA-HZ-7926    TCGA-HZ-8001    TCGA-HZ-8002    TCGA-HZ-8003    TCGA-HZ-8005 
  "FYN MUTATED"   "FYN MUTATED"   "FYN MUTATED"   "FYN MUTATED" "FYN WILD-TYPE" 
   TCGA-HZ-8315    TCGA-HZ-8317    TCGA-HZ-8636    TCGA-HZ-8638    TCGA-HZ-A49G 
"FYN WILD-TYPE" "FYN WILD-TYPE"   "FYN MUTATED"   "FYN MUTATED" "FYN WILD-TYPE" 
   TCGA-HZ-A49H    TCGA-HZ-A4BH    TCGA-HZ-A4BK    TCGA-IB-7644    TCGA-IB-7645 
"FYN WILD-TYPE"   "FYN MUTATED" "FYN WILD-TYPE" "FYN WILD-TYPE" "FYN WILD-TYPE" 
   TCGA-IB-7646    TCGA-IB-7647    TCGA-IB-7649    TCGA-IB-7651    TCGA-IB-7652 
"FYN WILD-TYPE" "FYN WILD-TYPE" "FYN WILD-TYPE" "FYN WILD-TYPE" "FYN WILD-TYPE" 
   TCGA-IB-7885    TCGA-IB-7886    TCGA-IB-7887    TCGA-IB-7888    TCGA-IB-7889 
"FYN WILD-TYPE" "FYN WILD-TYPE" "FYN WILD-TYPE" "FYN WILD-TYPE" "FYN WILD-TYPE" 
   TCGA-IB-7890    TCGA-IB-7891    TCGA-IB-7893    TCGA-IB-7897    TCGA-IB-8126 
"FYN WILD-TYPE" "FYN WILD-TYPE" "FYN WILD-TYPE" "FYN WILD-TYPE" "FYN WILD-TYPE" 
   TCGA-IB-8127    TCGA-IB-A5SO    TCGA-IB-A5SP    TCGA-IB-A5SQ    TCGA-IB-A5SS 
"FYN WILD-TYPE" "FYN WILD-TYPE" "FYN WILD-TYPE" "FYN WILD-TYPE" "FYN WILD-TYPE" 
   TCGA-IB-A5ST    TCGA-IB-A6UG    TCGA-LB-A7SX    TCGA-OE-A75W    TCGA-PZ-A5RE 
"FYN WILD-TYPE" "FYN WILD-TYPE" "FYN WILD-TYPE" "FYN WILD-TYPE" "FYN WILD-TYPE" 
   TCGA-Q3-A5QY    TCGA-US-A779    TCGA-US-A77E    TCGA-US-A77J 
"FYN WILD-TYPE" "FYN WILD-TYPE" "FYN WILD-TYPE" "FYN WILD-TYPE" 
[1] "hr="     "9700000"
D44V2, continuous
               vv
clus            STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  FYN MUTATED          1        1         0         4         1        1
  FYN WILD-TYPE        0        3        11        47         1        2
D44V3, multiclass
               vv
clus            T1+T2 T3+T4
  FYN MUTATED       2     6
  FYN WILD-TYPE     4    60
D44V4, multiclass
       clus
vv      FYN MUTATED FYN WILD-TYPE
  T1+T2           2             4
  T3+T4           6            60
D44V5, binary
               cls
clus             0  1
  FYN MUTATED    4  4
  FYN WILD-TYPE 13 50
[1] "tbl2"
               cls
clus            [,1] [,2]
  FYN MUTATED      4    4
  FYN WILD-TYPE   13   50
   clus
vv  FYN MUTATED FYN WILD-TYPE
  0           4            13
  1           4            50
               vv
clus            M0 M1 MX
  FYN MUTATED    0  1  7
  FYN WILD-TYPE 39  2 23
D44V6, multiclass
    clus
vv   FYN MUTATED FYN WILD-TYPE
  M0           0            39
  M1           1             2
  MX           7            23
D44V7, binary
               cls
clus             0  1
  FYN MUTATED    3  5
  FYN WILD-TYPE 33 31
[1] "tbl2"
               cls
clus            [,1] [,2]
  FYN MUTATED      3    5
  FYN WILD-TYPE   33   31
        clus
vv       FYN MUTATED FYN WILD-TYPE
  FEMALE           3            33
  MALE             5            31
               vv
clus            PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  FYN MUTATED                                     7
  FYN WILD-TYPE                                  58
               vv
clus            PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  FYN MUTATED                                       0
  FYN WILD-TYPE                                     4
               vv
clus            PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  FYN MUTATED                                                  1
  FYN WILD-TYPE                                                1
D44V8, multiclass
                                                  clus
vv                                                 FYN MUTATED FYN WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                        7            58
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                      0             4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA           1             1
D44V9, continuous
D44V10, continuous
               vv
clus            R0 R1 RX
  FYN MUTATED    5  2  1
  FYN WILD-TYPE 37 22  1
D44V11, multiclass
    clus
vv   FYN MUTATED FYN WILD-TYPE
  R0           5            37
  R1           2            22
  RX           1             1
D44V12, continuous

Clustering(45) Variable = TMCO1 MUTATION ANALYSIS
D45V1, survival
                 sevent
clus2              0  1
  TMCO1 MUTATED    6  3
  TMCO1 WILD-TYPE 34 26
  TMCO1 MUTATED TMCO1 WILD-TYPE 
              9              60 
  TMCO1 MUTATED TMCO1 WILD-TYPE 
              3              26 
$`TMCO1 MUTATED`
TCGA-F2-6880 TCGA-H6-8124 TCGA-H6-A45N TCGA-HZ-7923 TCGA-HZ-8315 TCGA-HZ-A49G 
        9.70        12.89         7.66         0.26         0.92         0.76 
TCGA-IB-7651 TCGA-IB-7887 TCGA-IB-8127 
       19.82         3.62        17.16 

$`TMCO1 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H TCGA-FB-A4P5 
       10.98        11.84         7.10         5.03        19.27         0.13 
TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR TCGA-FZ-5920 
       11.93        12.66         2.47         0.03         5.46         2.01 
TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H8-A6C1 TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-7919 
       36.20        20.81        13.02         7.89         0.92         0.66 
TCGA-HZ-7922 TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 
        0.13        12.13        11.87         0.26         0.62         0.79 
TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8317 TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49H 
        0.69         3.95         0.53         0.16         2.99         0.95 
TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 
        6.38         1.51        11.41        49.38         4.77        21.90 
TCGA-IB-7649 TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7888 TCGA-IB-7889 
       15.35        15.65        27.98         4.04        43.79        15.81 
TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-A5SO 
       19.66        16.04         3.85        15.98         0.56        10.82 
TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX 
        9.86         7.20        15.12         0.26         1.35         4.18 
TCGA-OE-A75W TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
        3.62         8.12        13.68        16.80        14.14        18.67 

  TMCO1 MUTATED TMCO1 WILD-TYPE 
           0.26            0.03 
  TMCO1 MUTATED TMCO1 WILD-TYPE 
          19.82           49.38 
  TMCO1 MUTATED TMCO1 WILD-TYPE 
          7.660           7.545 
[1] "0.3 - 19.8 (7.7)" "0.0 - 49.4 (7.5)"
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"TMCO1 WILD-TYPE"   "TMCO1 MUTATED" "TMCO1 WILD-TYPE" "TMCO1 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"TMCO1 WILD-TYPE" "TMCO1 WILD-TYPE" "TMCO1 WILD-TYPE" "TMCO1 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"TMCO1 WILD-TYPE" "TMCO1 WILD-TYPE" "TMCO1 WILD-TYPE" "TMCO1 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"TMCO1 WILD-TYPE" "TMCO1 WILD-TYPE" "TMCO1 WILD-TYPE"   "TMCO1 MUTATED" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
  "TMCO1 MUTATED" "TMCO1 WILD-TYPE" "TMCO1 WILD-TYPE" "TMCO1 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"TMCO1 WILD-TYPE" "TMCO1 WILD-TYPE"   "TMCO1 MUTATED" "TMCO1 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"TMCO1 WILD-TYPE" "TMCO1 WILD-TYPE" "TMCO1 WILD-TYPE" "TMCO1 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"TMCO1 WILD-TYPE" "TMCO1 WILD-TYPE"   "TMCO1 MUTATED" "TMCO1 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"TMCO1 WILD-TYPE" "TMCO1 WILD-TYPE"   "TMCO1 MUTATED" "TMCO1 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"TMCO1 WILD-TYPE" "TMCO1 WILD-TYPE" "TMCO1 WILD-TYPE" "TMCO1 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"TMCO1 WILD-TYPE" "TMCO1 WILD-TYPE" "TMCO1 WILD-TYPE"   "TMCO1 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"TMCO1 WILD-TYPE" "TMCO1 WILD-TYPE" "TMCO1 WILD-TYPE"   "TMCO1 MUTATED" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"TMCO1 WILD-TYPE" "TMCO1 WILD-TYPE" "TMCO1 WILD-TYPE" "TMCO1 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"TMCO1 WILD-TYPE" "TMCO1 WILD-TYPE" "TMCO1 WILD-TYPE"   "TMCO1 MUTATED" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"TMCO1 WILD-TYPE" "TMCO1 WILD-TYPE" "TMCO1 WILD-TYPE" "TMCO1 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"TMCO1 WILD-TYPE" "TMCO1 WILD-TYPE" "TMCO1 WILD-TYPE" "TMCO1 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"TMCO1 WILD-TYPE" "TMCO1 WILD-TYPE" "TMCO1 WILD-TYPE" "TMCO1 WILD-TYPE" 
     TCGA-US-A77J 
"TMCO1 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"TMCO1 WILD-TYPE"   "TMCO1 MUTATED" "TMCO1 WILD-TYPE" "TMCO1 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"TMCO1 WILD-TYPE" "TMCO1 WILD-TYPE" "TMCO1 WILD-TYPE" "TMCO1 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"TMCO1 WILD-TYPE" "TMCO1 WILD-TYPE" "TMCO1 WILD-TYPE" "TMCO1 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"TMCO1 WILD-TYPE" "TMCO1 WILD-TYPE" "TMCO1 WILD-TYPE"   "TMCO1 MUTATED" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
  "TMCO1 MUTATED" "TMCO1 WILD-TYPE" "TMCO1 WILD-TYPE" "TMCO1 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"TMCO1 WILD-TYPE" "TMCO1 WILD-TYPE"   "TMCO1 MUTATED" "TMCO1 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"TMCO1 WILD-TYPE" "TMCO1 WILD-TYPE" "TMCO1 WILD-TYPE" "TMCO1 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"TMCO1 WILD-TYPE" "TMCO1 WILD-TYPE"   "TMCO1 MUTATED" "TMCO1 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"TMCO1 WILD-TYPE" "TMCO1 WILD-TYPE"   "TMCO1 MUTATED" "TMCO1 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"TMCO1 WILD-TYPE" "TMCO1 WILD-TYPE" "TMCO1 WILD-TYPE" "TMCO1 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"TMCO1 WILD-TYPE" "TMCO1 WILD-TYPE" "TMCO1 WILD-TYPE"   "TMCO1 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"TMCO1 WILD-TYPE" "TMCO1 WILD-TYPE" "TMCO1 WILD-TYPE"   "TMCO1 MUTATED" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"TMCO1 WILD-TYPE" "TMCO1 WILD-TYPE" "TMCO1 WILD-TYPE" "TMCO1 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"TMCO1 WILD-TYPE" "TMCO1 WILD-TYPE" "TMCO1 WILD-TYPE"   "TMCO1 MUTATED" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"TMCO1 WILD-TYPE" "TMCO1 WILD-TYPE" "TMCO1 WILD-TYPE" "TMCO1 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"TMCO1 WILD-TYPE" "TMCO1 WILD-TYPE" "TMCO1 WILD-TYPE" "TMCO1 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"TMCO1 WILD-TYPE" "TMCO1 WILD-TYPE" "TMCO1 WILD-TYPE" "TMCO1 WILD-TYPE" 
     TCGA-US-A77J 
"TMCO1 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"TMCO1 WILD-TYPE"   "TMCO1 MUTATED" "TMCO1 WILD-TYPE" "TMCO1 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"TMCO1 WILD-TYPE" "TMCO1 WILD-TYPE" "TMCO1 WILD-TYPE" "TMCO1 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"TMCO1 WILD-TYPE" "TMCO1 WILD-TYPE" "TMCO1 WILD-TYPE" "TMCO1 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"TMCO1 WILD-TYPE" "TMCO1 WILD-TYPE" "TMCO1 WILD-TYPE"   "TMCO1 MUTATED" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
  "TMCO1 MUTATED" "TMCO1 WILD-TYPE" "TMCO1 WILD-TYPE" "TMCO1 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"TMCO1 WILD-TYPE" "TMCO1 WILD-TYPE"   "TMCO1 MUTATED" "TMCO1 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"TMCO1 WILD-TYPE" "TMCO1 WILD-TYPE" "TMCO1 WILD-TYPE" "TMCO1 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"TMCO1 WILD-TYPE" "TMCO1 WILD-TYPE"   "TMCO1 MUTATED" "TMCO1 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"TMCO1 WILD-TYPE" "TMCO1 WILD-TYPE"   "TMCO1 MUTATED" "TMCO1 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"TMCO1 WILD-TYPE" "TMCO1 WILD-TYPE" "TMCO1 WILD-TYPE" "TMCO1 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"TMCO1 WILD-TYPE" "TMCO1 WILD-TYPE" "TMCO1 WILD-TYPE"   "TMCO1 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"TMCO1 WILD-TYPE" "TMCO1 WILD-TYPE" "TMCO1 WILD-TYPE"   "TMCO1 MUTATED" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"TMCO1 WILD-TYPE" "TMCO1 WILD-TYPE" "TMCO1 WILD-TYPE" "TMCO1 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"TMCO1 WILD-TYPE" "TMCO1 WILD-TYPE" "TMCO1 WILD-TYPE"   "TMCO1 MUTATED" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"TMCO1 WILD-TYPE" "TMCO1 WILD-TYPE" "TMCO1 WILD-TYPE" "TMCO1 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"TMCO1 WILD-TYPE" "TMCO1 WILD-TYPE" "TMCO1 WILD-TYPE" "TMCO1 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"TMCO1 WILD-TYPE" "TMCO1 WILD-TYPE" "TMCO1 WILD-TYPE" "TMCO1 WILD-TYPE" 
     TCGA-US-A77J 
"TMCO1 WILD-TYPE" 
[1] "hr=" "1"  
D45V2, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  TMCO1 MUTATED          0        0         2         7         0        0
  TMCO1 WILD-TYPE        1        4         9        44         2        3
D45V3, multiclass
                 vv
clus              T1+T2 T3+T4
  TMCO1 MUTATED       1     8
  TMCO1 WILD-TYPE     5    58
D45V4, multiclass
       clus
vv      TMCO1 MUTATED TMCO1 WILD-TYPE
  T1+T2             1               5
  T3+T4             8              58
D45V5, binary
                 cls
clus               0  1
  TMCO1 MUTATED    2  7
  TMCO1 WILD-TYPE 15 47
[1] "tbl2"
                 cls
clus              [,1] [,2]
  TMCO1 MUTATED      2    7
  TMCO1 WILD-TYPE   15   47
   clus
vv  TMCO1 MUTATED TMCO1 WILD-TYPE
  0             2              15
  1             7              47
                 vv
clus              M0 M1 MX
  TMCO1 MUTATED    5  0  4
  TMCO1 WILD-TYPE 34  3 26
D45V6, multiclass
    clus
vv   TMCO1 MUTATED TMCO1 WILD-TYPE
  M0             5              34
  M1             0               3
  MX             4              26
D45V7, binary
                 cls
clus               0  1
  TMCO1 MUTATED    6  3
  TMCO1 WILD-TYPE 30 33
[1] "tbl2"
                 cls
clus              [,1] [,2]
  TMCO1 MUTATED      6    3
  TMCO1 WILD-TYPE   30   33
        clus
vv       TMCO1 MUTATED TMCO1 WILD-TYPE
  FEMALE             6              30
  MALE               3              33
                 vv
clus              PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  TMCO1 MUTATED                                     8
  TMCO1 WILD-TYPE                                  57
                 vv
clus              PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  TMCO1 MUTATED                                       1
  TMCO1 WILD-TYPE                                     3
                 vv
clus              PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  TMCO1 MUTATED                                                  0
  TMCO1 WILD-TYPE                                                2
D45V8, multiclass
                                                  clus
vv                                                 TMCO1 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                          8
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                        1
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA             0
                                                  clus
vv                                                 TMCO1 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                           57
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                          3
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA               2
D45V9, continuous
D45V10, continuous
                 vv
clus              R0 R1 RX
  TMCO1 MUTATED    4  4  0
  TMCO1 WILD-TYPE 38 20  2
D45V11, multiclass
    clus
vv   TMCO1 MUTATED TMCO1 WILD-TYPE
  R0             4              38
  R1             4              20
  RX             0               2
D45V12, continuous

Clustering(46) Variable = NPNT MUTATION ANALYSIS
D46V1, survival
                sevent
clus2             0  1
  NPNT MUTATED    2  6
  NPNT WILD-TYPE 38 23
  NPNT MUTATED NPNT WILD-TYPE 
             8             61 
  NPNT MUTATED NPNT WILD-TYPE 
             6             23 
$`NPNT MUTATED`
TCGA-F2-6879 TCGA-F2-A44G TCGA-HZ-8003 TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7888 
       10.98         5.03         0.69        11.41        49.38        43.79 
TCGA-IB-A5SQ TCGA-Q3-A5QY 
        7.20        13.68 

$`NPNT WILD-TYPE`
TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44H TCGA-FB-A4P5 TCGA-FB-A4P6 
        9.70        11.84         7.10        19.27         0.13        11.93 
TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR TCGA-FZ-5920 TCGA-FZ-5922 
       12.66         2.47         0.03         5.46         2.01        36.20 
TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7289 TCGA-HZ-7918 
       20.81        12.89         7.66        13.02         7.89         0.92 
TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 
        0.66         0.13         0.26        12.13        11.87         0.26 
TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8636 
        0.62         0.79         3.95         0.92         0.53         0.16 
TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7646 
        2.99         0.76         0.95         6.38         1.51         4.77 
TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7651 TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7886 
       21.90        15.35        19.82        15.65        27.98         4.04 
TCGA-IB-7887 TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-7897 
        3.62        15.81        19.66        16.04         3.85        15.98 
TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SS TCGA-IB-A5ST 
        0.56        17.16        10.82         9.86        15.12         0.26 
TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W TCGA-PZ-A5RE TCGA-US-A779 TCGA-US-A77E 
        1.35         4.18         3.62         8.12        16.80        14.14 
TCGA-US-A77J 
       18.67 

  NPNT MUTATED NPNT WILD-TYPE 
          0.69           0.03 
  NPNT MUTATED NPNT WILD-TYPE 
         49.38          36.20 
  NPNT MUTATED NPNT WILD-TYPE 
        11.195          7.100 
[1] "0.7 - 49.4 (11.2)" "0.0 - 36.2 (7.1)" 
    TCGA-F2-6879     TCGA-F2-6880     TCGA-F2-7273     TCGA-F2-7276 
  "NPNT MUTATED" "NPNT WILD-TYPE" "NPNT WILD-TYPE" "NPNT WILD-TYPE" 
    TCGA-F2-A44G     TCGA-F2-A44H     TCGA-FB-A4P5     TCGA-FB-A4P6 
  "NPNT MUTATED" "NPNT WILD-TYPE" "NPNT WILD-TYPE" "NPNT WILD-TYPE" 
    TCGA-FB-A545     TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-FB-A7DR 
"NPNT WILD-TYPE" "NPNT WILD-TYPE" "NPNT WILD-TYPE" "NPNT WILD-TYPE" 
    TCGA-FZ-5920     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-H6-8124 
"NPNT WILD-TYPE" "NPNT WILD-TYPE" "NPNT WILD-TYPE" "NPNT WILD-TYPE" 
    TCGA-H6-A45N     TCGA-H8-A6C1     TCGA-HZ-7289     TCGA-HZ-7918 
"NPNT WILD-TYPE" "NPNT WILD-TYPE" "NPNT WILD-TYPE" "NPNT WILD-TYPE" 
    TCGA-HZ-7919     TCGA-HZ-7922     TCGA-HZ-7923     TCGA-HZ-7924 
"NPNT WILD-TYPE" "NPNT WILD-TYPE" "NPNT WILD-TYPE" "NPNT WILD-TYPE" 
    TCGA-HZ-7925     TCGA-HZ-7926     TCGA-HZ-8001     TCGA-HZ-8002 
"NPNT WILD-TYPE" "NPNT WILD-TYPE" "NPNT WILD-TYPE" "NPNT WILD-TYPE" 
    TCGA-HZ-8003     TCGA-HZ-8005     TCGA-HZ-8315     TCGA-HZ-8317 
  "NPNT MUTATED" "NPNT WILD-TYPE" "NPNT WILD-TYPE" "NPNT WILD-TYPE" 
    TCGA-HZ-8636     TCGA-HZ-8638     TCGA-HZ-A49G     TCGA-HZ-A49H 
"NPNT WILD-TYPE" "NPNT WILD-TYPE" "NPNT WILD-TYPE" "NPNT WILD-TYPE" 
    TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-IB-7644     TCGA-IB-7645 
"NPNT WILD-TYPE" "NPNT WILD-TYPE"   "NPNT MUTATED"   "NPNT MUTATED" 
    TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7651 
"NPNT WILD-TYPE" "NPNT WILD-TYPE" "NPNT WILD-TYPE" "NPNT WILD-TYPE" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887 
"NPNT WILD-TYPE" "NPNT WILD-TYPE" "NPNT WILD-TYPE" "NPNT WILD-TYPE" 
    TCGA-IB-7888     TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891 
  "NPNT MUTATED" "NPNT WILD-TYPE" "NPNT WILD-TYPE" "NPNT WILD-TYPE" 
    TCGA-IB-7893     TCGA-IB-7897     TCGA-IB-8126     TCGA-IB-8127 
"NPNT WILD-TYPE" "NPNT WILD-TYPE" "NPNT WILD-TYPE" "NPNT WILD-TYPE" 
    TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS 
"NPNT WILD-TYPE" "NPNT WILD-TYPE"   "NPNT MUTATED" "NPNT WILD-TYPE" 
    TCGA-IB-A5ST     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
"NPNT WILD-TYPE" "NPNT WILD-TYPE" "NPNT WILD-TYPE" "NPNT WILD-TYPE" 
    TCGA-PZ-A5RE     TCGA-Q3-A5QY     TCGA-US-A779     TCGA-US-A77E 
"NPNT WILD-TYPE"   "NPNT MUTATED" "NPNT WILD-TYPE" "NPNT WILD-TYPE" 
    TCGA-US-A77J 
"NPNT WILD-TYPE" 
    TCGA-F2-6879     TCGA-F2-6880     TCGA-F2-7273     TCGA-F2-7276 
  "NPNT MUTATED" "NPNT WILD-TYPE" "NPNT WILD-TYPE" "NPNT WILD-TYPE" 
    TCGA-F2-A44G     TCGA-F2-A44H     TCGA-FB-A4P5     TCGA-FB-A4P6 
  "NPNT MUTATED" "NPNT WILD-TYPE" "NPNT WILD-TYPE" "NPNT WILD-TYPE" 
    TCGA-FB-A545     TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-FB-A7DR 
"NPNT WILD-TYPE" "NPNT WILD-TYPE" "NPNT WILD-TYPE" "NPNT WILD-TYPE" 
    TCGA-FZ-5920     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-H6-8124 
"NPNT WILD-TYPE" "NPNT WILD-TYPE" "NPNT WILD-TYPE" "NPNT WILD-TYPE" 
    TCGA-H6-A45N     TCGA-H8-A6C1     TCGA-HZ-7289     TCGA-HZ-7918 
"NPNT WILD-TYPE" "NPNT WILD-TYPE" "NPNT WILD-TYPE" "NPNT WILD-TYPE" 
    TCGA-HZ-7919     TCGA-HZ-7922     TCGA-HZ-7923     TCGA-HZ-7924 
"NPNT WILD-TYPE" "NPNT WILD-TYPE" "NPNT WILD-TYPE" "NPNT WILD-TYPE" 
    TCGA-HZ-7925     TCGA-HZ-7926     TCGA-HZ-8001     TCGA-HZ-8002 
"NPNT WILD-TYPE" "NPNT WILD-TYPE" "NPNT WILD-TYPE" "NPNT WILD-TYPE" 
    TCGA-HZ-8003     TCGA-HZ-8005     TCGA-HZ-8315     TCGA-HZ-8317 
  "NPNT MUTATED" "NPNT WILD-TYPE" "NPNT WILD-TYPE" "NPNT WILD-TYPE" 
    TCGA-HZ-8636     TCGA-HZ-8638     TCGA-HZ-A49G     TCGA-HZ-A49H 
"NPNT WILD-TYPE" "NPNT WILD-TYPE" "NPNT WILD-TYPE" "NPNT WILD-TYPE" 
    TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-IB-7644     TCGA-IB-7645 
"NPNT WILD-TYPE" "NPNT WILD-TYPE"   "NPNT MUTATED"   "NPNT MUTATED" 
    TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7651 
"NPNT WILD-TYPE" "NPNT WILD-TYPE" "NPNT WILD-TYPE" "NPNT WILD-TYPE" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887 
"NPNT WILD-TYPE" "NPNT WILD-TYPE" "NPNT WILD-TYPE" "NPNT WILD-TYPE" 
    TCGA-IB-7888     TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891 
  "NPNT MUTATED" "NPNT WILD-TYPE" "NPNT WILD-TYPE" "NPNT WILD-TYPE" 
    TCGA-IB-7893     TCGA-IB-7897     TCGA-IB-8126     TCGA-IB-8127 
"NPNT WILD-TYPE" "NPNT WILD-TYPE" "NPNT WILD-TYPE" "NPNT WILD-TYPE" 
    TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS 
"NPNT WILD-TYPE" "NPNT WILD-TYPE"   "NPNT MUTATED" "NPNT WILD-TYPE" 
    TCGA-IB-A5ST     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
"NPNT WILD-TYPE" "NPNT WILD-TYPE" "NPNT WILD-TYPE" "NPNT WILD-TYPE" 
    TCGA-PZ-A5RE     TCGA-Q3-A5QY     TCGA-US-A779     TCGA-US-A77E 
"NPNT WILD-TYPE"   "NPNT MUTATED" "NPNT WILD-TYPE" "NPNT WILD-TYPE" 
    TCGA-US-A77J 
"NPNT WILD-TYPE" 
    TCGA-F2-6879     TCGA-F2-6880     TCGA-F2-7273     TCGA-F2-7276 
  "NPNT MUTATED" "NPNT WILD-TYPE" "NPNT WILD-TYPE" "NPNT WILD-TYPE" 
    TCGA-F2-A44G     TCGA-F2-A44H     TCGA-FB-A4P5     TCGA-FB-A4P6 
  "NPNT MUTATED" "NPNT WILD-TYPE" "NPNT WILD-TYPE" "NPNT WILD-TYPE" 
    TCGA-FB-A545     TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-FB-A7DR 
"NPNT WILD-TYPE" "NPNT WILD-TYPE" "NPNT WILD-TYPE" "NPNT WILD-TYPE" 
    TCGA-FZ-5920     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-H6-8124 
"NPNT WILD-TYPE" "NPNT WILD-TYPE" "NPNT WILD-TYPE" "NPNT WILD-TYPE" 
    TCGA-H6-A45N     TCGA-H8-A6C1     TCGA-HZ-7289     TCGA-HZ-7918 
"NPNT WILD-TYPE" "NPNT WILD-TYPE" "NPNT WILD-TYPE" "NPNT WILD-TYPE" 
    TCGA-HZ-7919     TCGA-HZ-7922     TCGA-HZ-7923     TCGA-HZ-7924 
"NPNT WILD-TYPE" "NPNT WILD-TYPE" "NPNT WILD-TYPE" "NPNT WILD-TYPE" 
    TCGA-HZ-7925     TCGA-HZ-7926     TCGA-HZ-8001     TCGA-HZ-8002 
"NPNT WILD-TYPE" "NPNT WILD-TYPE" "NPNT WILD-TYPE" "NPNT WILD-TYPE" 
    TCGA-HZ-8003     TCGA-HZ-8005     TCGA-HZ-8315     TCGA-HZ-8317 
  "NPNT MUTATED" "NPNT WILD-TYPE" "NPNT WILD-TYPE" "NPNT WILD-TYPE" 
    TCGA-HZ-8636     TCGA-HZ-8638     TCGA-HZ-A49G     TCGA-HZ-A49H 
"NPNT WILD-TYPE" "NPNT WILD-TYPE" "NPNT WILD-TYPE" "NPNT WILD-TYPE" 
    TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-IB-7644     TCGA-IB-7645 
"NPNT WILD-TYPE" "NPNT WILD-TYPE"   "NPNT MUTATED"   "NPNT MUTATED" 
    TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7651 
"NPNT WILD-TYPE" "NPNT WILD-TYPE" "NPNT WILD-TYPE" "NPNT WILD-TYPE" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887 
"NPNT WILD-TYPE" "NPNT WILD-TYPE" "NPNT WILD-TYPE" "NPNT WILD-TYPE" 
    TCGA-IB-7888     TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891 
  "NPNT MUTATED" "NPNT WILD-TYPE" "NPNT WILD-TYPE" "NPNT WILD-TYPE" 
    TCGA-IB-7893     TCGA-IB-7897     TCGA-IB-8126     TCGA-IB-8127 
"NPNT WILD-TYPE" "NPNT WILD-TYPE" "NPNT WILD-TYPE" "NPNT WILD-TYPE" 
    TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS 
"NPNT WILD-TYPE" "NPNT WILD-TYPE"   "NPNT MUTATED" "NPNT WILD-TYPE" 
    TCGA-IB-A5ST     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
"NPNT WILD-TYPE" "NPNT WILD-TYPE" "NPNT WILD-TYPE" "NPNT WILD-TYPE" 
    TCGA-PZ-A5RE     TCGA-Q3-A5QY     TCGA-US-A779     TCGA-US-A77E 
"NPNT WILD-TYPE"   "NPNT MUTATED" "NPNT WILD-TYPE" "NPNT WILD-TYPE" 
    TCGA-US-A77J 
"NPNT WILD-TYPE" 
[1] "hr=" "1.4"
D46V2, continuous
                vv
clus             STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  NPNT MUTATED          0        1         1         5         0        1
  NPNT WILD-TYPE        1        3        10        46         2        2
D46V3, multiclass
                vv
clus             T1+T2 T3+T4
  NPNT MUTATED       1     7
  NPNT WILD-TYPE     5    59
D46V4, multiclass
       clus
vv      NPNT MUTATED NPNT WILD-TYPE
  T1+T2            1              5
  T3+T4            7             59
D46V5, binary
                cls
clus              0  1
  NPNT MUTATED    2  6
  NPNT WILD-TYPE 15 48
[1] "tbl2"
                cls
clus             [,1] [,2]
  NPNT MUTATED      2    6
  NPNT WILD-TYPE   15   48
   clus
vv  NPNT MUTATED NPNT WILD-TYPE
  0            2             15
  1            6             48
                vv
clus             M0 M1 MX
  NPNT MUTATED    5  1  2
  NPNT WILD-TYPE 34  2 28
D46V6, multiclass
    clus
vv   NPNT MUTATED NPNT WILD-TYPE
  M0            5             34
  M1            1              2
  MX            2             28
D46V7, binary
                cls
clus              0  1
  NPNT MUTATED    6  2
  NPNT WILD-TYPE 30 34
[1] "tbl2"
                cls
clus             [,1] [,2]
  NPNT MUTATED      6    2
  NPNT WILD-TYPE   30   34
        clus
vv       NPNT MUTATED NPNT WILD-TYPE
  FEMALE            6             30
  MALE              2             34
                vv
clus             PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  NPNT MUTATED                                     7
  NPNT WILD-TYPE                                  58
                vv
clus             PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  NPNT MUTATED                                       0
  NPNT WILD-TYPE                                     4
                vv
clus             PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  NPNT MUTATED                                                  0
  NPNT WILD-TYPE                                                2
D46V8, multiclass
                                                  clus
vv                                                 NPNT MUTATED NPNT WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                         7             58
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                       0              4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA            0              2
D46V9, continuous
[1] "Remove cluster labels:" "NPNT MUTATED"          
clus
  NPNT MUTATED NPNT WILD-TYPE 
             1             21 
    TCGA-F2-6880     TCGA-FB-A4P5     TCGA-FB-A4P6     TCGA-FB-A5VM 
"NPNT WILD-TYPE" "NPNT WILD-TYPE" "NPNT WILD-TYPE" "NPNT WILD-TYPE" 
    TCGA-FB-A78T     TCGA-FB-A7DR     TCGA-H6-8124     TCGA-H6-A45N 
"NPNT WILD-TYPE" "NPNT WILD-TYPE" "NPNT WILD-TYPE" "NPNT WILD-TYPE" 
    TCGA-H8-A6C1     TCGA-IB-7649     TCGA-IB-7651     TCGA-IB-7885 
"NPNT WILD-TYPE" "NPNT WILD-TYPE" "NPNT WILD-TYPE" "NPNT WILD-TYPE" 
    TCGA-IB-7886     TCGA-IB-7887     TCGA-IB-7891     TCGA-IB-8126 
"NPNT WILD-TYPE" "NPNT WILD-TYPE" "NPNT WILD-TYPE" "NPNT WILD-TYPE" 
    TCGA-IB-8127     TCGA-IB-A5SS     TCGA-IB-A6UG     TCGA-LB-A7SX 
"NPNT WILD-TYPE" "NPNT WILD-TYPE" "NPNT WILD-TYPE" "NPNT WILD-TYPE" 
    TCGA-OE-A75W 
"NPNT WILD-TYPE" 
D46V10, continuous
[1] "Remove cluster labels:" "NPNT MUTATED"          
clus
  NPNT MUTATED NPNT WILD-TYPE 
             1             18 
    TCGA-FB-A4P5     TCGA-FB-A4P6     TCGA-FB-A5VM     TCGA-FB-A78T 
"NPNT WILD-TYPE" "NPNT WILD-TYPE" "NPNT WILD-TYPE" "NPNT WILD-TYPE" 
    TCGA-FB-A7DR     TCGA-H6-8124     TCGA-H8-A6C1     TCGA-IB-7649 
"NPNT WILD-TYPE" "NPNT WILD-TYPE" "NPNT WILD-TYPE" "NPNT WILD-TYPE" 
    TCGA-IB-7651     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7891 
"NPNT WILD-TYPE" "NPNT WILD-TYPE" "NPNT WILD-TYPE" "NPNT WILD-TYPE" 
    TCGA-IB-8126     TCGA-IB-8127     TCGA-IB-A5SS     TCGA-IB-A6UG 
"NPNT WILD-TYPE" "NPNT WILD-TYPE" "NPNT WILD-TYPE" "NPNT WILD-TYPE" 
    TCGA-LB-A7SX     TCGA-OE-A75W 
"NPNT WILD-TYPE" "NPNT WILD-TYPE" 
                vv
clus             R0 R1 RX
  NPNT MUTATED    6  2  0
  NPNT WILD-TYPE 36 22  2
D46V11, multiclass
    clus
vv   NPNT MUTATED NPNT WILD-TYPE
  R0            6             36
  R1            2             22
  RX            0              2
D46V12, continuous

Clustering(47) Variable = ERF MUTATION ANALYSIS
D47V1, survival
               sevent
clus2            0  1
  ERF MUTATED    6  8
  ERF WILD-TYPE 34 21
  ERF MUTATED ERF WILD-TYPE 
           14            55 
  ERF MUTATED ERF WILD-TYPE 
            8            21 
$`ERF MUTATED`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-HZ-7922 TCGA-HZ-8003 TCGA-HZ-8005 
       10.98         9.70        11.84         0.13         0.69         3.95 
TCGA-HZ-A49G TCGA-IB-7646 TCGA-IB-7651 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7897 
        0.76         4.77        19.82         3.62        43.79        15.98 
TCGA-IB-8126 TCGA-OE-A75W 
        0.56         3.62 

$`ERF WILD-TYPE`
TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H TCGA-FB-A4P5 TCGA-FB-A4P6 TCGA-FB-A545 
        7.10         5.03        19.27         0.13        11.93        12.66 
TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR TCGA-FZ-5920 TCGA-FZ-5922 TCGA-FZ-5923 
        2.47         0.03         5.46         2.01        36.20        20.81 
TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-7919 
       12.89         7.66        13.02         7.89         0.92         0.66 
TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 
        0.26        12.13        11.87         0.26         0.62         0.79 
TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49H TCGA-HZ-A4BH 
        0.92         0.53         0.16         2.99         0.95         6.38 
TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7652 
        1.51        11.41        49.38        21.90        15.35        15.65 
TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-7893 
       27.98         4.04        15.81        19.66        16.04         3.85 
TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST 
       17.16        10.82         9.86         7.20        15.12         0.26 
TCGA-IB-A6UG TCGA-LB-A7SX TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E 
        1.35         4.18         8.12        13.68        16.80        14.14 
TCGA-US-A77J 
       18.67 

  ERF MUTATED ERF WILD-TYPE 
         0.13          0.03 
  ERF MUTATED ERF WILD-TYPE 
        43.79         49.38 
  ERF MUTATED ERF WILD-TYPE 
         4.36          7.89 
[1] "0.1 - 43.8 (4.4)" "0.0 - 49.4 (7.9)"
   TCGA-F2-6879    TCGA-F2-6880    TCGA-F2-7273    TCGA-F2-7276    TCGA-F2-A44G 
  "ERF MUTATED"   "ERF MUTATED"   "ERF MUTATED" "ERF WILD-TYPE" "ERF WILD-TYPE" 
   TCGA-F2-A44H    TCGA-FB-A4P5    TCGA-FB-A4P6    TCGA-FB-A545    TCGA-FB-A5VM 
"ERF WILD-TYPE" "ERF WILD-TYPE" "ERF WILD-TYPE" "ERF WILD-TYPE" "ERF WILD-TYPE" 
   TCGA-FB-A78T    TCGA-FB-A7DR    TCGA-FZ-5920    TCGA-FZ-5922    TCGA-FZ-5923 
"ERF WILD-TYPE" "ERF WILD-TYPE" "ERF WILD-TYPE" "ERF WILD-TYPE" "ERF WILD-TYPE" 
   TCGA-H6-8124    TCGA-H6-A45N    TCGA-H8-A6C1    TCGA-HZ-7289    TCGA-HZ-7918 
"ERF WILD-TYPE" "ERF WILD-TYPE" "ERF WILD-TYPE" "ERF WILD-TYPE" "ERF WILD-TYPE" 
   TCGA-HZ-7919    TCGA-HZ-7922    TCGA-HZ-7923    TCGA-HZ-7924    TCGA-HZ-7925 
"ERF WILD-TYPE"   "ERF MUTATED" "ERF WILD-TYPE" "ERF WILD-TYPE" "ERF WILD-TYPE" 
   TCGA-HZ-7926    TCGA-HZ-8001    TCGA-HZ-8002    TCGA-HZ-8003    TCGA-HZ-8005 
"ERF WILD-TYPE" "ERF WILD-TYPE" "ERF WILD-TYPE"   "ERF MUTATED"   "ERF MUTATED" 
   TCGA-HZ-8315    TCGA-HZ-8317    TCGA-HZ-8636    TCGA-HZ-8638    TCGA-HZ-A49G 
"ERF WILD-TYPE" "ERF WILD-TYPE" "ERF WILD-TYPE" "ERF WILD-TYPE"   "ERF MUTATED" 
   TCGA-HZ-A49H    TCGA-HZ-A4BH    TCGA-HZ-A4BK    TCGA-IB-7644    TCGA-IB-7645 
"ERF WILD-TYPE" "ERF WILD-TYPE" "ERF WILD-TYPE" "ERF WILD-TYPE" "ERF WILD-TYPE" 
   TCGA-IB-7646    TCGA-IB-7647    TCGA-IB-7649    TCGA-IB-7651    TCGA-IB-7652 
  "ERF MUTATED" "ERF WILD-TYPE" "ERF WILD-TYPE"   "ERF MUTATED" "ERF WILD-TYPE" 
   TCGA-IB-7885    TCGA-IB-7886    TCGA-IB-7887    TCGA-IB-7888    TCGA-IB-7889 
"ERF WILD-TYPE" "ERF WILD-TYPE"   "ERF MUTATED"   "ERF MUTATED" "ERF WILD-TYPE" 
   TCGA-IB-7890    TCGA-IB-7891    TCGA-IB-7893    TCGA-IB-7897    TCGA-IB-8126 
"ERF WILD-TYPE" "ERF WILD-TYPE" "ERF WILD-TYPE"   "ERF MUTATED"   "ERF MUTATED" 
   TCGA-IB-8127    TCGA-IB-A5SO    TCGA-IB-A5SP    TCGA-IB-A5SQ    TCGA-IB-A5SS 
"ERF WILD-TYPE" "ERF WILD-TYPE" "ERF WILD-TYPE" "ERF WILD-TYPE" "ERF WILD-TYPE" 
   TCGA-IB-A5ST    TCGA-IB-A6UG    TCGA-LB-A7SX    TCGA-OE-A75W    TCGA-PZ-A5RE 
"ERF WILD-TYPE" "ERF WILD-TYPE" "ERF WILD-TYPE"   "ERF MUTATED" "ERF WILD-TYPE" 
   TCGA-Q3-A5QY    TCGA-US-A779    TCGA-US-A77E    TCGA-US-A77J 
"ERF WILD-TYPE" "ERF WILD-TYPE" "ERF WILD-TYPE" "ERF WILD-TYPE" 
   TCGA-F2-6879    TCGA-F2-6880    TCGA-F2-7273    TCGA-F2-7276    TCGA-F2-A44G 
  "ERF MUTATED"   "ERF MUTATED"   "ERF MUTATED" "ERF WILD-TYPE" "ERF WILD-TYPE" 
   TCGA-F2-A44H    TCGA-FB-A4P5    TCGA-FB-A4P6    TCGA-FB-A545    TCGA-FB-A5VM 
"ERF WILD-TYPE" "ERF WILD-TYPE" "ERF WILD-TYPE" "ERF WILD-TYPE" "ERF WILD-TYPE" 
   TCGA-FB-A78T    TCGA-FB-A7DR    TCGA-FZ-5920    TCGA-FZ-5922    TCGA-FZ-5923 
"ERF WILD-TYPE" "ERF WILD-TYPE" "ERF WILD-TYPE" "ERF WILD-TYPE" "ERF WILD-TYPE" 
   TCGA-H6-8124    TCGA-H6-A45N    TCGA-H8-A6C1    TCGA-HZ-7289    TCGA-HZ-7918 
"ERF WILD-TYPE" "ERF WILD-TYPE" "ERF WILD-TYPE" "ERF WILD-TYPE" "ERF WILD-TYPE" 
   TCGA-HZ-7919    TCGA-HZ-7922    TCGA-HZ-7923    TCGA-HZ-7924    TCGA-HZ-7925 
"ERF WILD-TYPE"   "ERF MUTATED" "ERF WILD-TYPE" "ERF WILD-TYPE" "ERF WILD-TYPE" 
   TCGA-HZ-7926    TCGA-HZ-8001    TCGA-HZ-8002    TCGA-HZ-8003    TCGA-HZ-8005 
"ERF WILD-TYPE" "ERF WILD-TYPE" "ERF WILD-TYPE"   "ERF MUTATED"   "ERF MUTATED" 
   TCGA-HZ-8315    TCGA-HZ-8317    TCGA-HZ-8636    TCGA-HZ-8638    TCGA-HZ-A49G 
"ERF WILD-TYPE" "ERF WILD-TYPE" "ERF WILD-TYPE" "ERF WILD-TYPE"   "ERF MUTATED" 
   TCGA-HZ-A49H    TCGA-HZ-A4BH    TCGA-HZ-A4BK    TCGA-IB-7644    TCGA-IB-7645 
"ERF WILD-TYPE" "ERF WILD-TYPE" "ERF WILD-TYPE" "ERF WILD-TYPE" "ERF WILD-TYPE" 
   TCGA-IB-7646    TCGA-IB-7647    TCGA-IB-7649    TCGA-IB-7651    TCGA-IB-7652 
  "ERF MUTATED" "ERF WILD-TYPE" "ERF WILD-TYPE"   "ERF MUTATED" "ERF WILD-TYPE" 
   TCGA-IB-7885    TCGA-IB-7886    TCGA-IB-7887    TCGA-IB-7888    TCGA-IB-7889 
"ERF WILD-TYPE" "ERF WILD-TYPE"   "ERF MUTATED"   "ERF MUTATED" "ERF WILD-TYPE" 
   TCGA-IB-7890    TCGA-IB-7891    TCGA-IB-7893    TCGA-IB-7897    TCGA-IB-8126 
"ERF WILD-TYPE" "ERF WILD-TYPE" "ERF WILD-TYPE"   "ERF MUTATED"   "ERF MUTATED" 
   TCGA-IB-8127    TCGA-IB-A5SO    TCGA-IB-A5SP    TCGA-IB-A5SQ    TCGA-IB-A5SS 
"ERF WILD-TYPE" "ERF WILD-TYPE" "ERF WILD-TYPE" "ERF WILD-TYPE" "ERF WILD-TYPE" 
   TCGA-IB-A5ST    TCGA-IB-A6UG    TCGA-LB-A7SX    TCGA-OE-A75W    TCGA-PZ-A5RE 
"ERF WILD-TYPE" "ERF WILD-TYPE" "ERF WILD-TYPE"   "ERF MUTATED" "ERF WILD-TYPE" 
   TCGA-Q3-A5QY    TCGA-US-A779    TCGA-US-A77E    TCGA-US-A77J 
"ERF WILD-TYPE" "ERF WILD-TYPE" "ERF WILD-TYPE" "ERF WILD-TYPE" 
   TCGA-F2-6879    TCGA-F2-6880    TCGA-F2-7273    TCGA-F2-7276    TCGA-F2-A44G 
  "ERF MUTATED"   "ERF MUTATED"   "ERF MUTATED" "ERF WILD-TYPE" "ERF WILD-TYPE" 
   TCGA-F2-A44H    TCGA-FB-A4P5    TCGA-FB-A4P6    TCGA-FB-A545    TCGA-FB-A5VM 
"ERF WILD-TYPE" "ERF WILD-TYPE" "ERF WILD-TYPE" "ERF WILD-TYPE" "ERF WILD-TYPE" 
   TCGA-FB-A78T    TCGA-FB-A7DR    TCGA-FZ-5920    TCGA-FZ-5922    TCGA-FZ-5923 
"ERF WILD-TYPE" "ERF WILD-TYPE" "ERF WILD-TYPE" "ERF WILD-TYPE" "ERF WILD-TYPE" 
   TCGA-H6-8124    TCGA-H6-A45N    TCGA-H8-A6C1    TCGA-HZ-7289    TCGA-HZ-7918 
"ERF WILD-TYPE" "ERF WILD-TYPE" "ERF WILD-TYPE" "ERF WILD-TYPE" "ERF WILD-TYPE" 
   TCGA-HZ-7919    TCGA-HZ-7922    TCGA-HZ-7923    TCGA-HZ-7924    TCGA-HZ-7925 
"ERF WILD-TYPE"   "ERF MUTATED" "ERF WILD-TYPE" "ERF WILD-TYPE" "ERF WILD-TYPE" 
   TCGA-HZ-7926    TCGA-HZ-8001    TCGA-HZ-8002    TCGA-HZ-8003    TCGA-HZ-8005 
"ERF WILD-TYPE" "ERF WILD-TYPE" "ERF WILD-TYPE"   "ERF MUTATED"   "ERF MUTATED" 
   TCGA-HZ-8315    TCGA-HZ-8317    TCGA-HZ-8636    TCGA-HZ-8638    TCGA-HZ-A49G 
"ERF WILD-TYPE" "ERF WILD-TYPE" "ERF WILD-TYPE" "ERF WILD-TYPE"   "ERF MUTATED" 
   TCGA-HZ-A49H    TCGA-HZ-A4BH    TCGA-HZ-A4BK    TCGA-IB-7644    TCGA-IB-7645 
"ERF WILD-TYPE" "ERF WILD-TYPE" "ERF WILD-TYPE" "ERF WILD-TYPE" "ERF WILD-TYPE" 
   TCGA-IB-7646    TCGA-IB-7647    TCGA-IB-7649    TCGA-IB-7651    TCGA-IB-7652 
  "ERF MUTATED" "ERF WILD-TYPE" "ERF WILD-TYPE"   "ERF MUTATED" "ERF WILD-TYPE" 
   TCGA-IB-7885    TCGA-IB-7886    TCGA-IB-7887    TCGA-IB-7888    TCGA-IB-7889 
"ERF WILD-TYPE" "ERF WILD-TYPE"   "ERF MUTATED"   "ERF MUTATED" "ERF WILD-TYPE" 
   TCGA-IB-7890    TCGA-IB-7891    TCGA-IB-7893    TCGA-IB-7897    TCGA-IB-8126 
"ERF WILD-TYPE" "ERF WILD-TYPE" "ERF WILD-TYPE"   "ERF MUTATED"   "ERF MUTATED" 
   TCGA-IB-8127    TCGA-IB-A5SO    TCGA-IB-A5SP    TCGA-IB-A5SQ    TCGA-IB-A5SS 
"ERF WILD-TYPE" "ERF WILD-TYPE" "ERF WILD-TYPE" "ERF WILD-TYPE" "ERF WILD-TYPE" 
   TCGA-IB-A5ST    TCGA-IB-A6UG    TCGA-LB-A7SX    TCGA-OE-A75W    TCGA-PZ-A5RE 
"ERF WILD-TYPE" "ERF WILD-TYPE" "ERF WILD-TYPE"   "ERF MUTATED" "ERF WILD-TYPE" 
   TCGA-Q3-A5QY    TCGA-US-A779    TCGA-US-A77E    TCGA-US-A77J 
"ERF WILD-TYPE" "ERF WILD-TYPE" "ERF WILD-TYPE" "ERF WILD-TYPE" 
[1] "hr=" "1.6"
D47V2, continuous
               vv
clus            STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  ERF MUTATED          0        1         2        11         1        0
  ERF WILD-TYPE        1        3         9        40         1        3
D47V3, multiclass
               vv
clus            T1+T2 T3+T4
  ERF MUTATED       2    13
  ERF WILD-TYPE     4    53
D47V4, multiclass
       clus
vv      ERF MUTATED ERF WILD-TYPE
  T1+T2           2             4
  T3+T4          13            53
D47V5, binary
               cls
clus             0  1
  ERF MUTATED    3 12
  ERF WILD-TYPE 14 42
[1] "tbl2"
               cls
clus            [,1] [,2]
  ERF MUTATED      3   12
  ERF WILD-TYPE   14   42
   clus
vv  ERF MUTATED ERF WILD-TYPE
  0           3            14
  1          12            42
               vv
clus            M0 M1 MX
  ERF MUTATED   10  0  5
  ERF WILD-TYPE 29  3 25
D47V6, multiclass
    clus
vv   ERF MUTATED ERF WILD-TYPE
  M0          10            29
  M1           0             3
  MX           5            25
D47V7, binary
               cls
clus             0  1
  ERF MUTATED    8  7
  ERF WILD-TYPE 28 29
[1] "tbl2"
               cls
clus            [,1] [,2]
  ERF MUTATED      8    7
  ERF WILD-TYPE   28   29
        clus
vv       ERF MUTATED ERF WILD-TYPE
  FEMALE           8            28
  MALE             7            29
               vv
clus            PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  ERF MUTATED                                    14
  ERF WILD-TYPE                                  51
               vv
clus            PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  ERF MUTATED                                       0
  ERF WILD-TYPE                                     4
               vv
clus            PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  ERF MUTATED                                                  0
  ERF WILD-TYPE                                                2
D47V8, multiclass
                                                  clus
vv                                                 ERF MUTATED ERF WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                       14            51
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                      0             4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA           0             2
D47V9, continuous
D47V10, continuous
               vv
clus            R0 R1 RX
  ERF MUTATED    9  6  0
  ERF WILD-TYPE 33 18  2
D47V11, multiclass
    clus
vv   ERF MUTATED ERF WILD-TYPE
  R0           9            33
  R1           6            18
  RX           0             2
D47V12, continuous

Clustering(48) Variable = SLC24A1 MUTATION ANALYSIS
D48V1, survival
                   sevent
clus2                0  1
  SLC24A1 MUTATED    5  1
  SLC24A1 WILD-TYPE 35 28
  SLC24A1 MUTATED SLC24A1 WILD-TYPE 
                6                63 
  SLC24A1 MUTATED SLC24A1 WILD-TYPE 
                1                28 
$`SLC24A1 MUTATED`
TCGA-HZ-7923 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8636 TCGA-HZ-A49G TCGA-IB-7651 
        0.26         0.79         0.69         0.16         0.76        19.82 

$`SLC24A1 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P5 TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR 
        0.13        11.93        12.66         2.47         0.03         5.46 
TCGA-FZ-5920 TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 
        2.01        36.20        20.81        12.89         7.66        13.02 
TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7924 TCGA-HZ-7925 
        7.89         0.92         0.66         0.13        12.13        11.87 
TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8638 
        0.26         0.62         3.95         0.92         0.53         2.99 
TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7646 
        0.95         6.38         1.51        11.41        49.38         4.77 
TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 
       21.90        15.35        15.65        27.98         4.04         3.62 
TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-7897 
       43.79        15.81        19.66        16.04         3.85        15.98 
TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS 
        0.56        17.16        10.82         9.86         7.20        15.12 
TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W TCGA-PZ-A5RE TCGA-Q3-A5QY 
        0.26         1.35         4.18         3.62         8.12        13.68 
TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
       16.80        14.14        18.67 

  SLC24A1 MUTATED SLC24A1 WILD-TYPE 
             0.16              0.03 
  SLC24A1 MUTATED SLC24A1 WILD-TYPE 
            19.82             49.38 
  SLC24A1 MUTATED SLC24A1 WILD-TYPE 
            0.725             8.120 
[1] "0.2 - 19.8 (0.7)" "0.0 - 49.4 (8.1)"
       TCGA-F2-6879        TCGA-F2-6880        TCGA-F2-7273        TCGA-F2-7276 
"SLC24A1 WILD-TYPE" "SLC24A1 WILD-TYPE" "SLC24A1 WILD-TYPE" "SLC24A1 WILD-TYPE" 
       TCGA-F2-A44G        TCGA-F2-A44H        TCGA-FB-A4P5        TCGA-FB-A4P6 
"SLC24A1 WILD-TYPE" "SLC24A1 WILD-TYPE" "SLC24A1 WILD-TYPE" "SLC24A1 WILD-TYPE" 
       TCGA-FB-A545        TCGA-FB-A5VM        TCGA-FB-A78T        TCGA-FB-A7DR 
"SLC24A1 WILD-TYPE" "SLC24A1 WILD-TYPE" "SLC24A1 WILD-TYPE" "SLC24A1 WILD-TYPE" 
       TCGA-FZ-5920        TCGA-FZ-5922        TCGA-FZ-5923        TCGA-H6-8124 
"SLC24A1 WILD-TYPE" "SLC24A1 WILD-TYPE" "SLC24A1 WILD-TYPE" "SLC24A1 WILD-TYPE" 
       TCGA-H6-A45N        TCGA-H8-A6C1        TCGA-HZ-7289        TCGA-HZ-7918 
"SLC24A1 WILD-TYPE" "SLC24A1 WILD-TYPE" "SLC24A1 WILD-TYPE" "SLC24A1 WILD-TYPE" 
       TCGA-HZ-7919        TCGA-HZ-7922        TCGA-HZ-7923        TCGA-HZ-7924 
"SLC24A1 WILD-TYPE" "SLC24A1 WILD-TYPE"   "SLC24A1 MUTATED" "SLC24A1 WILD-TYPE" 
       TCGA-HZ-7925        TCGA-HZ-7926        TCGA-HZ-8001        TCGA-HZ-8002 
"SLC24A1 WILD-TYPE" "SLC24A1 WILD-TYPE" "SLC24A1 WILD-TYPE"   "SLC24A1 MUTATED" 
       TCGA-HZ-8003        TCGA-HZ-8005        TCGA-HZ-8315        TCGA-HZ-8317 
  "SLC24A1 MUTATED" "SLC24A1 WILD-TYPE" "SLC24A1 WILD-TYPE" "SLC24A1 WILD-TYPE" 
       TCGA-HZ-8636        TCGA-HZ-8638        TCGA-HZ-A49G        TCGA-HZ-A49H 
  "SLC24A1 MUTATED" "SLC24A1 WILD-TYPE"   "SLC24A1 MUTATED" "SLC24A1 WILD-TYPE" 
       TCGA-HZ-A4BH        TCGA-HZ-A4BK        TCGA-IB-7644        TCGA-IB-7645 
"SLC24A1 WILD-TYPE" "SLC24A1 WILD-TYPE" "SLC24A1 WILD-TYPE" "SLC24A1 WILD-TYPE" 
       TCGA-IB-7646        TCGA-IB-7647        TCGA-IB-7649        TCGA-IB-7651 
"SLC24A1 WILD-TYPE" "SLC24A1 WILD-TYPE" "SLC24A1 WILD-TYPE"   "SLC24A1 MUTATED" 
       TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-7886        TCGA-IB-7887 
"SLC24A1 WILD-TYPE" "SLC24A1 WILD-TYPE" "SLC24A1 WILD-TYPE" "SLC24A1 WILD-TYPE" 
       TCGA-IB-7888        TCGA-IB-7889        TCGA-IB-7890        TCGA-IB-7891 
"SLC24A1 WILD-TYPE" "SLC24A1 WILD-TYPE" "SLC24A1 WILD-TYPE" "SLC24A1 WILD-TYPE" 
       TCGA-IB-7893        TCGA-IB-7897        TCGA-IB-8126        TCGA-IB-8127 
"SLC24A1 WILD-TYPE" "SLC24A1 WILD-TYPE" "SLC24A1 WILD-TYPE" "SLC24A1 WILD-TYPE" 
       TCGA-IB-A5SO        TCGA-IB-A5SP        TCGA-IB-A5SQ        TCGA-IB-A5SS 
"SLC24A1 WILD-TYPE" "SLC24A1 WILD-TYPE" "SLC24A1 WILD-TYPE" "SLC24A1 WILD-TYPE" 
       TCGA-IB-A5ST        TCGA-IB-A6UG        TCGA-LB-A7SX        TCGA-OE-A75W 
"SLC24A1 WILD-TYPE" "SLC24A1 WILD-TYPE" "SLC24A1 WILD-TYPE" "SLC24A1 WILD-TYPE" 
       TCGA-PZ-A5RE        TCGA-Q3-A5QY        TCGA-US-A779        TCGA-US-A77E 
"SLC24A1 WILD-TYPE" "SLC24A1 WILD-TYPE" "SLC24A1 WILD-TYPE" "SLC24A1 WILD-TYPE" 
       TCGA-US-A77J 
"SLC24A1 WILD-TYPE" 
       TCGA-F2-6879        TCGA-F2-6880        TCGA-F2-7273        TCGA-F2-7276 
"SLC24A1 WILD-TYPE" "SLC24A1 WILD-TYPE" "SLC24A1 WILD-TYPE" "SLC24A1 WILD-TYPE" 
       TCGA-F2-A44G        TCGA-F2-A44H        TCGA-FB-A4P5        TCGA-FB-A4P6 
"SLC24A1 WILD-TYPE" "SLC24A1 WILD-TYPE" "SLC24A1 WILD-TYPE" "SLC24A1 WILD-TYPE" 
       TCGA-FB-A545        TCGA-FB-A5VM        TCGA-FB-A78T        TCGA-FB-A7DR 
"SLC24A1 WILD-TYPE" "SLC24A1 WILD-TYPE" "SLC24A1 WILD-TYPE" "SLC24A1 WILD-TYPE" 
       TCGA-FZ-5920        TCGA-FZ-5922        TCGA-FZ-5923        TCGA-H6-8124 
"SLC24A1 WILD-TYPE" "SLC24A1 WILD-TYPE" "SLC24A1 WILD-TYPE" "SLC24A1 WILD-TYPE" 
       TCGA-H6-A45N        TCGA-H8-A6C1        TCGA-HZ-7289        TCGA-HZ-7918 
"SLC24A1 WILD-TYPE" "SLC24A1 WILD-TYPE" "SLC24A1 WILD-TYPE" "SLC24A1 WILD-TYPE" 
       TCGA-HZ-7919        TCGA-HZ-7922        TCGA-HZ-7923        TCGA-HZ-7924 
"SLC24A1 WILD-TYPE" "SLC24A1 WILD-TYPE"   "SLC24A1 MUTATED" "SLC24A1 WILD-TYPE" 
       TCGA-HZ-7925        TCGA-HZ-7926        TCGA-HZ-8001        TCGA-HZ-8002 
"SLC24A1 WILD-TYPE" "SLC24A1 WILD-TYPE" "SLC24A1 WILD-TYPE"   "SLC24A1 MUTATED" 
       TCGA-HZ-8003        TCGA-HZ-8005        TCGA-HZ-8315        TCGA-HZ-8317 
  "SLC24A1 MUTATED" "SLC24A1 WILD-TYPE" "SLC24A1 WILD-TYPE" "SLC24A1 WILD-TYPE" 
       TCGA-HZ-8636        TCGA-HZ-8638        TCGA-HZ-A49G        TCGA-HZ-A49H 
  "SLC24A1 MUTATED" "SLC24A1 WILD-TYPE"   "SLC24A1 MUTATED" "SLC24A1 WILD-TYPE" 
       TCGA-HZ-A4BH        TCGA-HZ-A4BK        TCGA-IB-7644        TCGA-IB-7645 
"SLC24A1 WILD-TYPE" "SLC24A1 WILD-TYPE" "SLC24A1 WILD-TYPE" "SLC24A1 WILD-TYPE" 
       TCGA-IB-7646        TCGA-IB-7647        TCGA-IB-7649        TCGA-IB-7651 
"SLC24A1 WILD-TYPE" "SLC24A1 WILD-TYPE" "SLC24A1 WILD-TYPE"   "SLC24A1 MUTATED" 
       TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-7886        TCGA-IB-7887 
"SLC24A1 WILD-TYPE" "SLC24A1 WILD-TYPE" "SLC24A1 WILD-TYPE" "SLC24A1 WILD-TYPE" 
       TCGA-IB-7888        TCGA-IB-7889        TCGA-IB-7890        TCGA-IB-7891 
"SLC24A1 WILD-TYPE" "SLC24A1 WILD-TYPE" "SLC24A1 WILD-TYPE" "SLC24A1 WILD-TYPE" 
       TCGA-IB-7893        TCGA-IB-7897        TCGA-IB-8126        TCGA-IB-8127 
"SLC24A1 WILD-TYPE" "SLC24A1 WILD-TYPE" "SLC24A1 WILD-TYPE" "SLC24A1 WILD-TYPE" 
       TCGA-IB-A5SO        TCGA-IB-A5SP        TCGA-IB-A5SQ        TCGA-IB-A5SS 
"SLC24A1 WILD-TYPE" "SLC24A1 WILD-TYPE" "SLC24A1 WILD-TYPE" "SLC24A1 WILD-TYPE" 
       TCGA-IB-A5ST        TCGA-IB-A6UG        TCGA-LB-A7SX        TCGA-OE-A75W 
"SLC24A1 WILD-TYPE" "SLC24A1 WILD-TYPE" "SLC24A1 WILD-TYPE" "SLC24A1 WILD-TYPE" 
       TCGA-PZ-A5RE        TCGA-Q3-A5QY        TCGA-US-A779        TCGA-US-A77E 
"SLC24A1 WILD-TYPE" "SLC24A1 WILD-TYPE" "SLC24A1 WILD-TYPE" "SLC24A1 WILD-TYPE" 
       TCGA-US-A77J 
"SLC24A1 WILD-TYPE" 
       TCGA-F2-6879        TCGA-F2-6880        TCGA-F2-7273        TCGA-F2-7276 
"SLC24A1 WILD-TYPE" "SLC24A1 WILD-TYPE" "SLC24A1 WILD-TYPE" "SLC24A1 WILD-TYPE" 
       TCGA-F2-A44G        TCGA-F2-A44H        TCGA-FB-A4P5        TCGA-FB-A4P6 
"SLC24A1 WILD-TYPE" "SLC24A1 WILD-TYPE" "SLC24A1 WILD-TYPE" "SLC24A1 WILD-TYPE" 
       TCGA-FB-A545        TCGA-FB-A5VM        TCGA-FB-A78T        TCGA-FB-A7DR 
"SLC24A1 WILD-TYPE" "SLC24A1 WILD-TYPE" "SLC24A1 WILD-TYPE" "SLC24A1 WILD-TYPE" 
       TCGA-FZ-5920        TCGA-FZ-5922        TCGA-FZ-5923        TCGA-H6-8124 
"SLC24A1 WILD-TYPE" "SLC24A1 WILD-TYPE" "SLC24A1 WILD-TYPE" "SLC24A1 WILD-TYPE" 
       TCGA-H6-A45N        TCGA-H8-A6C1        TCGA-HZ-7289        TCGA-HZ-7918 
"SLC24A1 WILD-TYPE" "SLC24A1 WILD-TYPE" "SLC24A1 WILD-TYPE" "SLC24A1 WILD-TYPE" 
       TCGA-HZ-7919        TCGA-HZ-7922        TCGA-HZ-7923        TCGA-HZ-7924 
"SLC24A1 WILD-TYPE" "SLC24A1 WILD-TYPE"   "SLC24A1 MUTATED" "SLC24A1 WILD-TYPE" 
       TCGA-HZ-7925        TCGA-HZ-7926        TCGA-HZ-8001        TCGA-HZ-8002 
"SLC24A1 WILD-TYPE" "SLC24A1 WILD-TYPE" "SLC24A1 WILD-TYPE"   "SLC24A1 MUTATED" 
       TCGA-HZ-8003        TCGA-HZ-8005        TCGA-HZ-8315        TCGA-HZ-8317 
  "SLC24A1 MUTATED" "SLC24A1 WILD-TYPE" "SLC24A1 WILD-TYPE" "SLC24A1 WILD-TYPE" 
       TCGA-HZ-8636        TCGA-HZ-8638        TCGA-HZ-A49G        TCGA-HZ-A49H 
  "SLC24A1 MUTATED" "SLC24A1 WILD-TYPE"   "SLC24A1 MUTATED" "SLC24A1 WILD-TYPE" 
       TCGA-HZ-A4BH        TCGA-HZ-A4BK        TCGA-IB-7644        TCGA-IB-7645 
"SLC24A1 WILD-TYPE" "SLC24A1 WILD-TYPE" "SLC24A1 WILD-TYPE" "SLC24A1 WILD-TYPE" 
       TCGA-IB-7646        TCGA-IB-7647        TCGA-IB-7649        TCGA-IB-7651 
"SLC24A1 WILD-TYPE" "SLC24A1 WILD-TYPE" "SLC24A1 WILD-TYPE"   "SLC24A1 MUTATED" 
       TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-7886        TCGA-IB-7887 
"SLC24A1 WILD-TYPE" "SLC24A1 WILD-TYPE" "SLC24A1 WILD-TYPE" "SLC24A1 WILD-TYPE" 
       TCGA-IB-7888        TCGA-IB-7889        TCGA-IB-7890        TCGA-IB-7891 
"SLC24A1 WILD-TYPE" "SLC24A1 WILD-TYPE" "SLC24A1 WILD-TYPE" "SLC24A1 WILD-TYPE" 
       TCGA-IB-7893        TCGA-IB-7897        TCGA-IB-8126        TCGA-IB-8127 
"SLC24A1 WILD-TYPE" "SLC24A1 WILD-TYPE" "SLC24A1 WILD-TYPE" "SLC24A1 WILD-TYPE" 
       TCGA-IB-A5SO        TCGA-IB-A5SP        TCGA-IB-A5SQ        TCGA-IB-A5SS 
"SLC24A1 WILD-TYPE" "SLC24A1 WILD-TYPE" "SLC24A1 WILD-TYPE" "SLC24A1 WILD-TYPE" 
       TCGA-IB-A5ST        TCGA-IB-A6UG        TCGA-LB-A7SX        TCGA-OE-A75W 
"SLC24A1 WILD-TYPE" "SLC24A1 WILD-TYPE" "SLC24A1 WILD-TYPE" "SLC24A1 WILD-TYPE" 
       TCGA-PZ-A5RE        TCGA-Q3-A5QY        TCGA-US-A779        TCGA-US-A77E 
"SLC24A1 WILD-TYPE" "SLC24A1 WILD-TYPE" "SLC24A1 WILD-TYPE" "SLC24A1 WILD-TYPE" 
       TCGA-US-A77J 
"SLC24A1 WILD-TYPE" 
[1] "hr=" "1.2"
D48V2, continuous
                   vv
clus                STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  SLC24A1 MUTATED          0        1         1         4         0        1
  SLC24A1 WILD-TYPE        1        3        10        47         2        2
D48V3, multiclass
                   vv
clus                T1+T2 T3+T4
  SLC24A1 MUTATED       2     5
  SLC24A1 WILD-TYPE     4    61
D48V4, multiclass
       clus
vv      SLC24A1 MUTATED SLC24A1 WILD-TYPE
  T1+T2               2                 4
  T3+T4               5                61
D48V5, binary
                   cls
clus                 0  1
  SLC24A1 MUTATED    3  4
  SLC24A1 WILD-TYPE 14 50
[1] "tbl2"
                   cls
clus                [,1] [,2]
  SLC24A1 MUTATED      3    4
  SLC24A1 WILD-TYPE   14   50
   clus
vv  SLC24A1 MUTATED SLC24A1 WILD-TYPE
  0               3                14
  1               4                50
                   vv
clus                M0 M1 MX
  SLC24A1 MUTATED    1  1  5
  SLC24A1 WILD-TYPE 38  2 25
D48V6, multiclass
    clus
vv   SLC24A1 MUTATED SLC24A1 WILD-TYPE
  M0               1                38
  M1               1                 2
  MX               5                25
D48V7, binary
                   cls
clus                 0  1
  SLC24A1 MUTATED    4  3
  SLC24A1 WILD-TYPE 32 33
[1] "tbl2"
                   cls
clus                [,1] [,2]
  SLC24A1 MUTATED      4    3
  SLC24A1 WILD-TYPE   32   33
        clus
vv       SLC24A1 MUTATED SLC24A1 WILD-TYPE
  FEMALE               4                32
  MALE                 3                33
                   vv
clus                PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  SLC24A1 MUTATED                                     7
  SLC24A1 WILD-TYPE                                  58
                   vv
clus                PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  SLC24A1 MUTATED                                       0
  SLC24A1 WILD-TYPE                                     4
                   vv
clus                PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  SLC24A1 MUTATED                                                  0
  SLC24A1 WILD-TYPE                                                2
D48V8, multiclass
                                                  clus
vv                                                 SLC24A1 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                            7
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                          0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA               0
                                                  clus
vv                                                 SLC24A1 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                             58
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                            4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                 2
D48V9, continuous
[1] "Remove cluster labels:" "SLC24A1 MUTATED"       
clus
  SLC24A1 MUTATED SLC24A1 WILD-TYPE 
                1                21 
       TCGA-F2-6880        TCGA-FB-A4P5        TCGA-FB-A4P6        TCGA-FB-A5VM 
"SLC24A1 WILD-TYPE" "SLC24A1 WILD-TYPE" "SLC24A1 WILD-TYPE" "SLC24A1 WILD-TYPE" 
       TCGA-FB-A78T        TCGA-FB-A7DR        TCGA-H6-8124        TCGA-H6-A45N 
"SLC24A1 WILD-TYPE" "SLC24A1 WILD-TYPE" "SLC24A1 WILD-TYPE" "SLC24A1 WILD-TYPE" 
       TCGA-H8-A6C1        TCGA-IB-7644        TCGA-IB-7649        TCGA-IB-7885 
"SLC24A1 WILD-TYPE" "SLC24A1 WILD-TYPE" "SLC24A1 WILD-TYPE" "SLC24A1 WILD-TYPE" 
       TCGA-IB-7886        TCGA-IB-7887        TCGA-IB-7891        TCGA-IB-8126 
"SLC24A1 WILD-TYPE" "SLC24A1 WILD-TYPE" "SLC24A1 WILD-TYPE" "SLC24A1 WILD-TYPE" 
       TCGA-IB-8127        TCGA-IB-A5SS        TCGA-IB-A6UG        TCGA-LB-A7SX 
"SLC24A1 WILD-TYPE" "SLC24A1 WILD-TYPE" "SLC24A1 WILD-TYPE" "SLC24A1 WILD-TYPE" 
       TCGA-OE-A75W 
"SLC24A1 WILD-TYPE" 
D48V10, continuous
[1] "Remove cluster labels:" "SLC24A1 MUTATED"       
clus
  SLC24A1 MUTATED SLC24A1 WILD-TYPE 
                1                18 
       TCGA-FB-A4P5        TCGA-FB-A4P6        TCGA-FB-A5VM        TCGA-FB-A78T 
"SLC24A1 WILD-TYPE" "SLC24A1 WILD-TYPE" "SLC24A1 WILD-TYPE" "SLC24A1 WILD-TYPE" 
       TCGA-FB-A7DR        TCGA-H6-8124        TCGA-H8-A6C1        TCGA-IB-7644 
"SLC24A1 WILD-TYPE" "SLC24A1 WILD-TYPE" "SLC24A1 WILD-TYPE" "SLC24A1 WILD-TYPE" 
       TCGA-IB-7649        TCGA-IB-7885        TCGA-IB-7886        TCGA-IB-7891 
"SLC24A1 WILD-TYPE" "SLC24A1 WILD-TYPE" "SLC24A1 WILD-TYPE" "SLC24A1 WILD-TYPE" 
       TCGA-IB-8126        TCGA-IB-8127        TCGA-IB-A5SS        TCGA-IB-A6UG 
"SLC24A1 WILD-TYPE" "SLC24A1 WILD-TYPE" "SLC24A1 WILD-TYPE" "SLC24A1 WILD-TYPE" 
       TCGA-LB-A7SX        TCGA-OE-A75W 
"SLC24A1 WILD-TYPE" "SLC24A1 WILD-TYPE" 
                   vv
clus                R0 R1 RX
  SLC24A1 MUTATED    5  2  0
  SLC24A1 WILD-TYPE 37 22  2
D48V11, multiclass
    clus
vv   SLC24A1 MUTATED SLC24A1 WILD-TYPE
  R0               5                37
  R1               2                22
  RX               0                 2
D48V12, continuous

Clustering(49) Variable = TULP1 MUTATION ANALYSIS
D49V1, survival
                 sevent
clus2              0  1
  TULP1 MUTATED    5  2
  TULP1 WILD-TYPE 35 27
  TULP1 MUTATED TULP1 WILD-TYPE 
              7              62 
  TULP1 MUTATED TULP1 WILD-TYPE 
              2              27 
$`TULP1 MUTATED`
TCGA-FB-A4P6 TCGA-FB-A545 TCGA-HZ-7923 TCGA-HZ-8001 TCGA-HZ-8636 TCGA-IB-7893 
       11.93        12.66         0.26         0.62         0.16         3.85 
TCGA-IB-7897 
       15.98 

$`TULP1 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P5 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR TCGA-FZ-5920 TCGA-FZ-5922 
        0.13         2.47         0.03         5.46         2.01        36.20 
TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7289 TCGA-HZ-7918 
       20.81        12.89         7.66        13.02         7.89         0.92 
TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8002 
        0.66         0.13        12.13        11.87         0.26         0.79 
TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8638 TCGA-HZ-A49G 
        0.69         3.95         0.92         0.53         2.99         0.76 
TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7646 
        0.95         6.38         1.51        11.41        49.38         4.77 
TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7651 TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7886 
       21.90        15.35        19.82        15.65        27.98         4.04 
TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-8126 
        3.62        43.79        15.81        19.66        16.04         0.56 
TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST 
       17.16        10.82         9.86         7.20        15.12         0.26 
TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 
        1.35         4.18         3.62         8.12        13.68        16.80 
TCGA-US-A77E TCGA-US-A77J 
       14.14        18.67 

  TULP1 MUTATED TULP1 WILD-TYPE 
           0.16            0.03 
  TULP1 MUTATED TULP1 WILD-TYPE 
          15.98           49.38 
  TULP1 MUTATED TULP1 WILD-TYPE 
          3.850           7.775 
[1] "0.2 - 16.0 (3.9)" "0.0 - 49.4 (7.8)"
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"TULP1 WILD-TYPE" "TULP1 WILD-TYPE" "TULP1 WILD-TYPE" "TULP1 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"TULP1 WILD-TYPE" "TULP1 WILD-TYPE" "TULP1 WILD-TYPE"   "TULP1 MUTATED" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
  "TULP1 MUTATED" "TULP1 WILD-TYPE" "TULP1 WILD-TYPE" "TULP1 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"TULP1 WILD-TYPE" "TULP1 WILD-TYPE" "TULP1 WILD-TYPE" "TULP1 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"TULP1 WILD-TYPE" "TULP1 WILD-TYPE" "TULP1 WILD-TYPE" "TULP1 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"TULP1 WILD-TYPE" "TULP1 WILD-TYPE"   "TULP1 MUTATED" "TULP1 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"TULP1 WILD-TYPE" "TULP1 WILD-TYPE"   "TULP1 MUTATED" "TULP1 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"TULP1 WILD-TYPE" "TULP1 WILD-TYPE" "TULP1 WILD-TYPE" "TULP1 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
  "TULP1 MUTATED" "TULP1 WILD-TYPE" "TULP1 WILD-TYPE" "TULP1 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"TULP1 WILD-TYPE" "TULP1 WILD-TYPE" "TULP1 WILD-TYPE" "TULP1 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"TULP1 WILD-TYPE" "TULP1 WILD-TYPE" "TULP1 WILD-TYPE" "TULP1 WILD-TYPE" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"TULP1 WILD-TYPE" "TULP1 WILD-TYPE" "TULP1 WILD-TYPE" "TULP1 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"TULP1 WILD-TYPE" "TULP1 WILD-TYPE" "TULP1 WILD-TYPE" "TULP1 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
  "TULP1 MUTATED"   "TULP1 MUTATED" "TULP1 WILD-TYPE" "TULP1 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"TULP1 WILD-TYPE" "TULP1 WILD-TYPE" "TULP1 WILD-TYPE" "TULP1 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"TULP1 WILD-TYPE" "TULP1 WILD-TYPE" "TULP1 WILD-TYPE" "TULP1 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"TULP1 WILD-TYPE" "TULP1 WILD-TYPE" "TULP1 WILD-TYPE" "TULP1 WILD-TYPE" 
     TCGA-US-A77J 
"TULP1 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"TULP1 WILD-TYPE" "TULP1 WILD-TYPE" "TULP1 WILD-TYPE" "TULP1 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"TULP1 WILD-TYPE" "TULP1 WILD-TYPE" "TULP1 WILD-TYPE"   "TULP1 MUTATED" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
  "TULP1 MUTATED" "TULP1 WILD-TYPE" "TULP1 WILD-TYPE" "TULP1 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"TULP1 WILD-TYPE" "TULP1 WILD-TYPE" "TULP1 WILD-TYPE" "TULP1 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"TULP1 WILD-TYPE" "TULP1 WILD-TYPE" "TULP1 WILD-TYPE" "TULP1 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"TULP1 WILD-TYPE" "TULP1 WILD-TYPE"   "TULP1 MUTATED" "TULP1 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"TULP1 WILD-TYPE" "TULP1 WILD-TYPE"   "TULP1 MUTATED" "TULP1 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"TULP1 WILD-TYPE" "TULP1 WILD-TYPE" "TULP1 WILD-TYPE" "TULP1 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
  "TULP1 MUTATED" "TULP1 WILD-TYPE" "TULP1 WILD-TYPE" "TULP1 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"TULP1 WILD-TYPE" "TULP1 WILD-TYPE" "TULP1 WILD-TYPE" "TULP1 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"TULP1 WILD-TYPE" "TULP1 WILD-TYPE" "TULP1 WILD-TYPE" "TULP1 WILD-TYPE" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"TULP1 WILD-TYPE" "TULP1 WILD-TYPE" "TULP1 WILD-TYPE" "TULP1 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"TULP1 WILD-TYPE" "TULP1 WILD-TYPE" "TULP1 WILD-TYPE" "TULP1 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
  "TULP1 MUTATED"   "TULP1 MUTATED" "TULP1 WILD-TYPE" "TULP1 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"TULP1 WILD-TYPE" "TULP1 WILD-TYPE" "TULP1 WILD-TYPE" "TULP1 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"TULP1 WILD-TYPE" "TULP1 WILD-TYPE" "TULP1 WILD-TYPE" "TULP1 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"TULP1 WILD-TYPE" "TULP1 WILD-TYPE" "TULP1 WILD-TYPE" "TULP1 WILD-TYPE" 
     TCGA-US-A77J 
"TULP1 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"TULP1 WILD-TYPE" "TULP1 WILD-TYPE" "TULP1 WILD-TYPE" "TULP1 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"TULP1 WILD-TYPE" "TULP1 WILD-TYPE" "TULP1 WILD-TYPE"   "TULP1 MUTATED" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
  "TULP1 MUTATED" "TULP1 WILD-TYPE" "TULP1 WILD-TYPE" "TULP1 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"TULP1 WILD-TYPE" "TULP1 WILD-TYPE" "TULP1 WILD-TYPE" "TULP1 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"TULP1 WILD-TYPE" "TULP1 WILD-TYPE" "TULP1 WILD-TYPE" "TULP1 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"TULP1 WILD-TYPE" "TULP1 WILD-TYPE"   "TULP1 MUTATED" "TULP1 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"TULP1 WILD-TYPE" "TULP1 WILD-TYPE"   "TULP1 MUTATED" "TULP1 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"TULP1 WILD-TYPE" "TULP1 WILD-TYPE" "TULP1 WILD-TYPE" "TULP1 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
  "TULP1 MUTATED" "TULP1 WILD-TYPE" "TULP1 WILD-TYPE" "TULP1 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"TULP1 WILD-TYPE" "TULP1 WILD-TYPE" "TULP1 WILD-TYPE" "TULP1 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"TULP1 WILD-TYPE" "TULP1 WILD-TYPE" "TULP1 WILD-TYPE" "TULP1 WILD-TYPE" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"TULP1 WILD-TYPE" "TULP1 WILD-TYPE" "TULP1 WILD-TYPE" "TULP1 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"TULP1 WILD-TYPE" "TULP1 WILD-TYPE" "TULP1 WILD-TYPE" "TULP1 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
  "TULP1 MUTATED"   "TULP1 MUTATED" "TULP1 WILD-TYPE" "TULP1 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"TULP1 WILD-TYPE" "TULP1 WILD-TYPE" "TULP1 WILD-TYPE" "TULP1 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"TULP1 WILD-TYPE" "TULP1 WILD-TYPE" "TULP1 WILD-TYPE" "TULP1 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"TULP1 WILD-TYPE" "TULP1 WILD-TYPE" "TULP1 WILD-TYPE" "TULP1 WILD-TYPE" 
     TCGA-US-A77J 
"TULP1 WILD-TYPE" 
[1] "hr=" "1.3"
D49V2, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  TULP1 MUTATED          0        1         2         3         1        1
  TULP1 WILD-TYPE        1        3         9        48         1        2
D49V3, multiclass
                 vv
clus              T1+T2 T3+T4
  TULP1 MUTATED       1     7
  TULP1 WILD-TYPE     5    59
D49V4, multiclass
       clus
vv      TULP1 MUTATED TULP1 WILD-TYPE
  T1+T2             1               5
  T3+T4             7              59
D49V5, binary
                 cls
clus               0  1
  TULP1 MUTATED    5  3
  TULP1 WILD-TYPE 12 51
[1] "tbl2"
                 cls
clus              [,1] [,2]
  TULP1 MUTATED      5    3
  TULP1 WILD-TYPE   12   51
   clus
vv  TULP1 MUTATED TULP1 WILD-TYPE
  0             5              12
  1             3              51
                 vv
clus              M0 M1 MX
  TULP1 MUTATED    3  1  4
  TULP1 WILD-TYPE 36  2 26
D49V6, multiclass
    clus
vv   TULP1 MUTATED TULP1 WILD-TYPE
  M0             3              36
  M1             1               2
  MX             4              26
D49V7, binary
                 cls
clus               0  1
  TULP1 MUTATED    3  5
  TULP1 WILD-TYPE 33 31
[1] "tbl2"
                 cls
clus              [,1] [,2]
  TULP1 MUTATED      3    5
  TULP1 WILD-TYPE   33   31
        clus
vv       TULP1 MUTATED TULP1 WILD-TYPE
  FEMALE             3              33
  MALE               5              31
                 vv
clus              PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  TULP1 MUTATED                                     8
  TULP1 WILD-TYPE                                  57
                 vv
clus              PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  TULP1 MUTATED                                       0
  TULP1 WILD-TYPE                                     4
                 vv
clus              PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  TULP1 MUTATED                                                  0
  TULP1 WILD-TYPE                                                2
D49V8, multiclass
                                                  clus
vv                                                 TULP1 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                          8
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                        0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA             0
                                                  clus
vv                                                 TULP1 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                           57
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                          4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA               2
D49V9, continuous
[1] "Remove cluster labels:" "TULP1 MUTATED"         
clus
  TULP1 MUTATED TULP1 WILD-TYPE 
              1              21 
     TCGA-F2-6880      TCGA-FB-A4P5      TCGA-FB-A5VM      TCGA-FB-A78T 
"TULP1 WILD-TYPE" "TULP1 WILD-TYPE" "TULP1 WILD-TYPE" "TULP1 WILD-TYPE" 
     TCGA-FB-A7DR      TCGA-H6-8124      TCGA-H6-A45N      TCGA-H8-A6C1 
"TULP1 WILD-TYPE" "TULP1 WILD-TYPE" "TULP1 WILD-TYPE" "TULP1 WILD-TYPE" 
     TCGA-IB-7644      TCGA-IB-7649      TCGA-IB-7651      TCGA-IB-7885 
"TULP1 WILD-TYPE" "TULP1 WILD-TYPE" "TULP1 WILD-TYPE" "TULP1 WILD-TYPE" 
     TCGA-IB-7886      TCGA-IB-7887      TCGA-IB-7891      TCGA-IB-8126 
"TULP1 WILD-TYPE" "TULP1 WILD-TYPE" "TULP1 WILD-TYPE" "TULP1 WILD-TYPE" 
     TCGA-IB-8127      TCGA-IB-A5SS      TCGA-IB-A6UG      TCGA-LB-A7SX 
"TULP1 WILD-TYPE" "TULP1 WILD-TYPE" "TULP1 WILD-TYPE" "TULP1 WILD-TYPE" 
     TCGA-OE-A75W 
"TULP1 WILD-TYPE" 
D49V10, continuous
[1] "Remove cluster labels:" "TULP1 MUTATED"         
clus
  TULP1 MUTATED TULP1 WILD-TYPE 
              1              18 
     TCGA-FB-A4P5      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"TULP1 WILD-TYPE" "TULP1 WILD-TYPE" "TULP1 WILD-TYPE" "TULP1 WILD-TYPE" 
     TCGA-H6-8124      TCGA-H8-A6C1      TCGA-IB-7644      TCGA-IB-7649 
"TULP1 WILD-TYPE" "TULP1 WILD-TYPE" "TULP1 WILD-TYPE" "TULP1 WILD-TYPE" 
     TCGA-IB-7651      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7891 
"TULP1 WILD-TYPE" "TULP1 WILD-TYPE" "TULP1 WILD-TYPE" "TULP1 WILD-TYPE" 
     TCGA-IB-8126      TCGA-IB-8127      TCGA-IB-A5SS      TCGA-IB-A6UG 
"TULP1 WILD-TYPE" "TULP1 WILD-TYPE" "TULP1 WILD-TYPE" "TULP1 WILD-TYPE" 
     TCGA-LB-A7SX      TCGA-OE-A75W 
"TULP1 WILD-TYPE" "TULP1 WILD-TYPE" 
                 vv
clus              R0 R1 RX
  TULP1 MUTATED    5  1  0
  TULP1 WILD-TYPE 37 23  2
D49V11, multiclass
    clus
vv   TULP1 MUTATED TULP1 WILD-TYPE
  R0             5              37
  R1             1              23
  RX             0               2
D49V12, continuous

Clustering(50) Variable = BMP2K MUTATION ANALYSIS
D50V1, survival
                 sevent
clus2              0  1
  BMP2K MUTATED    9  4
  BMP2K WILD-TYPE 31 25
  BMP2K MUTATED BMP2K WILD-TYPE 
             13              56 
  BMP2K MUTATED BMP2K WILD-TYPE 
              4              25 
$`BMP2K MUTATED`
TCGA-F2-A44H TCGA-FB-A4P6 TCGA-FB-A545 TCGA-H6-8124 TCGA-H6-A45N TCGA-HZ-7923 
       19.27        11.93        12.66        12.89         7.66         0.26 
TCGA-HZ-7925 TCGA-HZ-A49H TCGA-HZ-A4BK TCGA-IB-7651 TCGA-IB-7888 TCGA-IB-7889 
       11.87         0.95         1.51        19.82        43.79        15.81 
TCGA-IB-A5SO 
       10.82 

$`BMP2K WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-FB-A4P5 
       10.98         9.70        11.84         7.10         5.03         0.13 
TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR TCGA-FZ-5920 TCGA-FZ-5922 TCGA-FZ-5923 
        2.47         0.03         5.46         2.01        36.20        20.81 
TCGA-H8-A6C1 TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7924 
       13.02         7.89         0.92         0.66         0.13        12.13 
TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 
        0.26         0.62         0.79         0.69         3.95         0.92 
TCGA-HZ-8317 TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A4BH TCGA-IB-7644 
        0.53         0.16         2.99         0.76         6.38        11.41 
TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7652 TCGA-IB-7885 
       49.38         4.77        21.90        15.35        15.65        27.98 
TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-7897 
        4.04         3.62        19.66        16.04         3.85        15.98 
TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST 
        0.56        17.16         9.86         7.20        15.12         0.26 
TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 
        1.35         4.18         3.62         8.12        13.68        16.80 
TCGA-US-A77E TCGA-US-A77J 
       14.14        18.67 

  BMP2K MUTATED BMP2K WILD-TYPE 
           0.26            0.03 
  BMP2K MUTATED BMP2K WILD-TYPE 
          43.79           49.38 
  BMP2K MUTATED BMP2K WILD-TYPE 
          11.93            5.92 
[1] "0.3 - 43.8 (11.9)" "0.0 - 49.4 (5.9)" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"BMP2K WILD-TYPE" "BMP2K WILD-TYPE" "BMP2K WILD-TYPE" "BMP2K WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"BMP2K WILD-TYPE"   "BMP2K MUTATED" "BMP2K WILD-TYPE"   "BMP2K MUTATED" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
  "BMP2K MUTATED" "BMP2K WILD-TYPE" "BMP2K WILD-TYPE" "BMP2K WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"BMP2K WILD-TYPE" "BMP2K WILD-TYPE" "BMP2K WILD-TYPE"   "BMP2K MUTATED" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
  "BMP2K MUTATED" "BMP2K WILD-TYPE" "BMP2K WILD-TYPE" "BMP2K WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"BMP2K WILD-TYPE" "BMP2K WILD-TYPE"   "BMP2K MUTATED" "BMP2K WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
  "BMP2K MUTATED" "BMP2K WILD-TYPE" "BMP2K WILD-TYPE" "BMP2K WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"BMP2K WILD-TYPE" "BMP2K WILD-TYPE" "BMP2K WILD-TYPE" "BMP2K WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"BMP2K WILD-TYPE" "BMP2K WILD-TYPE" "BMP2K WILD-TYPE"   "BMP2K MUTATED" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"BMP2K WILD-TYPE"   "BMP2K MUTATED" "BMP2K WILD-TYPE" "BMP2K WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"BMP2K WILD-TYPE" "BMP2K WILD-TYPE" "BMP2K WILD-TYPE"   "BMP2K MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"BMP2K WILD-TYPE" "BMP2K WILD-TYPE" "BMP2K WILD-TYPE" "BMP2K WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
  "BMP2K MUTATED"   "BMP2K MUTATED" "BMP2K WILD-TYPE" "BMP2K WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"BMP2K WILD-TYPE" "BMP2K WILD-TYPE" "BMP2K WILD-TYPE" "BMP2K WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
  "BMP2K MUTATED" "BMP2K WILD-TYPE" "BMP2K WILD-TYPE" "BMP2K WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"BMP2K WILD-TYPE" "BMP2K WILD-TYPE" "BMP2K WILD-TYPE" "BMP2K WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"BMP2K WILD-TYPE" "BMP2K WILD-TYPE" "BMP2K WILD-TYPE" "BMP2K WILD-TYPE" 
     TCGA-US-A77J 
"BMP2K WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"BMP2K WILD-TYPE" "BMP2K WILD-TYPE" "BMP2K WILD-TYPE" "BMP2K WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"BMP2K WILD-TYPE"   "BMP2K MUTATED" "BMP2K WILD-TYPE"   "BMP2K MUTATED" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
  "BMP2K MUTATED" "BMP2K WILD-TYPE" "BMP2K WILD-TYPE" "BMP2K WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"BMP2K WILD-TYPE" "BMP2K WILD-TYPE" "BMP2K WILD-TYPE"   "BMP2K MUTATED" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
  "BMP2K MUTATED" "BMP2K WILD-TYPE" "BMP2K WILD-TYPE" "BMP2K WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"BMP2K WILD-TYPE" "BMP2K WILD-TYPE"   "BMP2K MUTATED" "BMP2K WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
  "BMP2K MUTATED" "BMP2K WILD-TYPE" "BMP2K WILD-TYPE" "BMP2K WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"BMP2K WILD-TYPE" "BMP2K WILD-TYPE" "BMP2K WILD-TYPE" "BMP2K WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"BMP2K WILD-TYPE" "BMP2K WILD-TYPE" "BMP2K WILD-TYPE"   "BMP2K MUTATED" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"BMP2K WILD-TYPE"   "BMP2K MUTATED" "BMP2K WILD-TYPE" "BMP2K WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"BMP2K WILD-TYPE" "BMP2K WILD-TYPE" "BMP2K WILD-TYPE"   "BMP2K MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"BMP2K WILD-TYPE" "BMP2K WILD-TYPE" "BMP2K WILD-TYPE" "BMP2K WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
  "BMP2K MUTATED"   "BMP2K MUTATED" "BMP2K WILD-TYPE" "BMP2K WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"BMP2K WILD-TYPE" "BMP2K WILD-TYPE" "BMP2K WILD-TYPE" "BMP2K WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
  "BMP2K MUTATED" "BMP2K WILD-TYPE" "BMP2K WILD-TYPE" "BMP2K WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"BMP2K WILD-TYPE" "BMP2K WILD-TYPE" "BMP2K WILD-TYPE" "BMP2K WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"BMP2K WILD-TYPE" "BMP2K WILD-TYPE" "BMP2K WILD-TYPE" "BMP2K WILD-TYPE" 
     TCGA-US-A77J 
"BMP2K WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"BMP2K WILD-TYPE" "BMP2K WILD-TYPE" "BMP2K WILD-TYPE" "BMP2K WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"BMP2K WILD-TYPE"   "BMP2K MUTATED" "BMP2K WILD-TYPE"   "BMP2K MUTATED" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
  "BMP2K MUTATED" "BMP2K WILD-TYPE" "BMP2K WILD-TYPE" "BMP2K WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"BMP2K WILD-TYPE" "BMP2K WILD-TYPE" "BMP2K WILD-TYPE"   "BMP2K MUTATED" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
  "BMP2K MUTATED" "BMP2K WILD-TYPE" "BMP2K WILD-TYPE" "BMP2K WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"BMP2K WILD-TYPE" "BMP2K WILD-TYPE"   "BMP2K MUTATED" "BMP2K WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
  "BMP2K MUTATED" "BMP2K WILD-TYPE" "BMP2K WILD-TYPE" "BMP2K WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"BMP2K WILD-TYPE" "BMP2K WILD-TYPE" "BMP2K WILD-TYPE" "BMP2K WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"BMP2K WILD-TYPE" "BMP2K WILD-TYPE" "BMP2K WILD-TYPE"   "BMP2K MUTATED" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"BMP2K WILD-TYPE"   "BMP2K MUTATED" "BMP2K WILD-TYPE" "BMP2K WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"BMP2K WILD-TYPE" "BMP2K WILD-TYPE" "BMP2K WILD-TYPE"   "BMP2K MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"BMP2K WILD-TYPE" "BMP2K WILD-TYPE" "BMP2K WILD-TYPE" "BMP2K WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
  "BMP2K MUTATED"   "BMP2K MUTATED" "BMP2K WILD-TYPE" "BMP2K WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"BMP2K WILD-TYPE" "BMP2K WILD-TYPE" "BMP2K WILD-TYPE" "BMP2K WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
  "BMP2K MUTATED" "BMP2K WILD-TYPE" "BMP2K WILD-TYPE" "BMP2K WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"BMP2K WILD-TYPE" "BMP2K WILD-TYPE" "BMP2K WILD-TYPE" "BMP2K WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"BMP2K WILD-TYPE" "BMP2K WILD-TYPE" "BMP2K WILD-TYPE" "BMP2K WILD-TYPE" 
     TCGA-US-A77J 
"BMP2K WILD-TYPE" 
[1] "hr=" "2.1"
D50V2, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  BMP2K MUTATED          0        0         3        10         0        0
  BMP2K WILD-TYPE        1        4         8        41         2        3
D50V3, multiclass
                 vv
clus              T1+T2 T3+T4
  BMP2K MUTATED       0    13
  BMP2K WILD-TYPE     6    53
D50V4, multiclass
       clus
vv      BMP2K MUTATED BMP2K WILD-TYPE
  T1+T2             0               6
  T3+T4            13              53
D50V5, binary
                 cls
clus               0  1
  BMP2K MUTATED    3 10
  BMP2K WILD-TYPE 14 44
[1] "tbl2"
                 cls
clus              [,1] [,2]
  BMP2K MUTATED      3   10
  BMP2K WILD-TYPE   14   44
   clus
vv  BMP2K MUTATED BMP2K WILD-TYPE
  0             3              14
  1            10              44
                 vv
clus              M0 M1 MX
  BMP2K MUTATED    7  0  6
  BMP2K WILD-TYPE 32  3 24
D50V6, multiclass
    clus
vv   BMP2K MUTATED BMP2K WILD-TYPE
  M0             7              32
  M1             0               3
  MX             6              24
D50V7, binary
                 cls
clus               0  1
  BMP2K MUTATED    7  6
  BMP2K WILD-TYPE 29 30
[1] "tbl2"
                 cls
clus              [,1] [,2]
  BMP2K MUTATED      7    6
  BMP2K WILD-TYPE   29   30
        clus
vv       BMP2K MUTATED BMP2K WILD-TYPE
  FEMALE             7              29
  MALE               6              30
                 vv
clus              PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  BMP2K MUTATED                                    11
  BMP2K WILD-TYPE                                  54
                 vv
clus              PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  BMP2K MUTATED                                       2
  BMP2K WILD-TYPE                                     2
                 vv
clus              PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  BMP2K MUTATED                                                  0
  BMP2K WILD-TYPE                                                2
D50V8, multiclass
                                                  clus
vv                                                 BMP2K MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                         11
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                        2
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA             0
                                                  clus
vv                                                 BMP2K WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                           54
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                          2
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA               2
D50V9, continuous
D50V10, continuous
                 vv
clus              R0 R1 RX
  BMP2K MUTATED    9  1  0
  BMP2K WILD-TYPE 33 23  2
D50V11, multiclass
    clus
vv   BMP2K MUTATED BMP2K WILD-TYPE
  R0             9              33
  R1             1              23
  RX             0               2
D50V12, continuous

Clustering(51) Variable = FADS2 MUTATION ANALYSIS
D51V1, survival
                 sevent
clus2              0  1
  FADS2 MUTATED    4  6
  FADS2 WILD-TYPE 36 23
  FADS2 MUTATED FADS2 WILD-TYPE 
             10              59 
  FADS2 MUTATED FADS2 WILD-TYPE 
              6              23 
$`FADS2 MUTATED`
TCGA-F2-7276 TCGA-F2-A44H TCGA-FB-A4P6 TCGA-FZ-5922 TCGA-HZ-8001 TCGA-HZ-A4BH 
        7.10        19.27        11.93        36.20         0.62         6.38 
TCGA-IB-7645 TCGA-IB-7888 TCGA-IB-7890 TCGA-IB-7893 
       49.38        43.79        19.66         3.85 

$`FADS2 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-A44G TCGA-FB-A4P5 TCGA-FB-A545 
       10.98         9.70        11.84         5.03         0.13        12.66 
TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR TCGA-FZ-5920 TCGA-FZ-5923 TCGA-H6-8124 
        2.47         0.03         5.46         2.01        20.81        12.89 
TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7922 
        7.66        13.02         7.89         0.92         0.66         0.13 
TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8002 TCGA-HZ-8003 
        0.26        12.13        11.87         0.26         0.79         0.69 
TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G 
        3.95         0.92         0.53         0.16         2.99         0.76 
TCGA-HZ-A49H TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 
        0.95         1.51        11.41         4.77        21.90        15.35 
TCGA-IB-7651 TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7889 
       19.82        15.65        27.98         4.04         3.62        15.81 
TCGA-IB-7891 TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP 
       16.04        15.98         0.56        17.16        10.82         9.86 
TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W 
        7.20        15.12         0.26         1.35         4.18         3.62 
TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
        8.12        13.68        16.80        14.14        18.67 

  FADS2 MUTATED FADS2 WILD-TYPE 
           0.62            0.03 
  FADS2 MUTATED FADS2 WILD-TYPE 
          49.38           27.98 
  FADS2 MUTATED FADS2 WILD-TYPE 
           15.6             7.2 
[1] "0.6 - 49.4 (15.6)" "0.0 - 28.0 (7.2)" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"FADS2 WILD-TYPE" "FADS2 WILD-TYPE" "FADS2 WILD-TYPE"   "FADS2 MUTATED" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"FADS2 WILD-TYPE"   "FADS2 MUTATED" "FADS2 WILD-TYPE"   "FADS2 MUTATED" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"FADS2 WILD-TYPE" "FADS2 WILD-TYPE" "FADS2 WILD-TYPE" "FADS2 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"FADS2 WILD-TYPE"   "FADS2 MUTATED" "FADS2 WILD-TYPE" "FADS2 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"FADS2 WILD-TYPE" "FADS2 WILD-TYPE" "FADS2 WILD-TYPE" "FADS2 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"FADS2 WILD-TYPE" "FADS2 WILD-TYPE" "FADS2 WILD-TYPE" "FADS2 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"FADS2 WILD-TYPE" "FADS2 WILD-TYPE"   "FADS2 MUTATED" "FADS2 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"FADS2 WILD-TYPE" "FADS2 WILD-TYPE" "FADS2 WILD-TYPE" "FADS2 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"FADS2 WILD-TYPE" "FADS2 WILD-TYPE" "FADS2 WILD-TYPE" "FADS2 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
  "FADS2 MUTATED" "FADS2 WILD-TYPE" "FADS2 WILD-TYPE"   "FADS2 MUTATED" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"FADS2 WILD-TYPE" "FADS2 WILD-TYPE" "FADS2 WILD-TYPE" "FADS2 WILD-TYPE" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"FADS2 WILD-TYPE" "FADS2 WILD-TYPE" "FADS2 WILD-TYPE" "FADS2 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
  "FADS2 MUTATED" "FADS2 WILD-TYPE"   "FADS2 MUTATED" "FADS2 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
  "FADS2 MUTATED" "FADS2 WILD-TYPE" "FADS2 WILD-TYPE" "FADS2 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"FADS2 WILD-TYPE" "FADS2 WILD-TYPE" "FADS2 WILD-TYPE" "FADS2 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"FADS2 WILD-TYPE" "FADS2 WILD-TYPE" "FADS2 WILD-TYPE" "FADS2 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"FADS2 WILD-TYPE" "FADS2 WILD-TYPE" "FADS2 WILD-TYPE" "FADS2 WILD-TYPE" 
     TCGA-US-A77J 
"FADS2 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"FADS2 WILD-TYPE" "FADS2 WILD-TYPE" "FADS2 WILD-TYPE"   "FADS2 MUTATED" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"FADS2 WILD-TYPE"   "FADS2 MUTATED" "FADS2 WILD-TYPE"   "FADS2 MUTATED" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"FADS2 WILD-TYPE" "FADS2 WILD-TYPE" "FADS2 WILD-TYPE" "FADS2 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"FADS2 WILD-TYPE"   "FADS2 MUTATED" "FADS2 WILD-TYPE" "FADS2 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"FADS2 WILD-TYPE" "FADS2 WILD-TYPE" "FADS2 WILD-TYPE" "FADS2 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"FADS2 WILD-TYPE" "FADS2 WILD-TYPE" "FADS2 WILD-TYPE" "FADS2 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"FADS2 WILD-TYPE" "FADS2 WILD-TYPE"   "FADS2 MUTATED" "FADS2 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"FADS2 WILD-TYPE" "FADS2 WILD-TYPE" "FADS2 WILD-TYPE" "FADS2 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"FADS2 WILD-TYPE" "FADS2 WILD-TYPE" "FADS2 WILD-TYPE" "FADS2 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
  "FADS2 MUTATED" "FADS2 WILD-TYPE" "FADS2 WILD-TYPE"   "FADS2 MUTATED" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"FADS2 WILD-TYPE" "FADS2 WILD-TYPE" "FADS2 WILD-TYPE" "FADS2 WILD-TYPE" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"FADS2 WILD-TYPE" "FADS2 WILD-TYPE" "FADS2 WILD-TYPE" "FADS2 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
  "FADS2 MUTATED" "FADS2 WILD-TYPE"   "FADS2 MUTATED" "FADS2 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
  "FADS2 MUTATED" "FADS2 WILD-TYPE" "FADS2 WILD-TYPE" "FADS2 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"FADS2 WILD-TYPE" "FADS2 WILD-TYPE" "FADS2 WILD-TYPE" "FADS2 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"FADS2 WILD-TYPE" "FADS2 WILD-TYPE" "FADS2 WILD-TYPE" "FADS2 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"FADS2 WILD-TYPE" "FADS2 WILD-TYPE" "FADS2 WILD-TYPE" "FADS2 WILD-TYPE" 
     TCGA-US-A77J 
"FADS2 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"FADS2 WILD-TYPE" "FADS2 WILD-TYPE" "FADS2 WILD-TYPE"   "FADS2 MUTATED" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"FADS2 WILD-TYPE"   "FADS2 MUTATED" "FADS2 WILD-TYPE"   "FADS2 MUTATED" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"FADS2 WILD-TYPE" "FADS2 WILD-TYPE" "FADS2 WILD-TYPE" "FADS2 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"FADS2 WILD-TYPE"   "FADS2 MUTATED" "FADS2 WILD-TYPE" "FADS2 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"FADS2 WILD-TYPE" "FADS2 WILD-TYPE" "FADS2 WILD-TYPE" "FADS2 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"FADS2 WILD-TYPE" "FADS2 WILD-TYPE" "FADS2 WILD-TYPE" "FADS2 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"FADS2 WILD-TYPE" "FADS2 WILD-TYPE"   "FADS2 MUTATED" "FADS2 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"FADS2 WILD-TYPE" "FADS2 WILD-TYPE" "FADS2 WILD-TYPE" "FADS2 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"FADS2 WILD-TYPE" "FADS2 WILD-TYPE" "FADS2 WILD-TYPE" "FADS2 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
  "FADS2 MUTATED" "FADS2 WILD-TYPE" "FADS2 WILD-TYPE"   "FADS2 MUTATED" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"FADS2 WILD-TYPE" "FADS2 WILD-TYPE" "FADS2 WILD-TYPE" "FADS2 WILD-TYPE" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"FADS2 WILD-TYPE" "FADS2 WILD-TYPE" "FADS2 WILD-TYPE" "FADS2 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
  "FADS2 MUTATED" "FADS2 WILD-TYPE"   "FADS2 MUTATED" "FADS2 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
  "FADS2 MUTATED" "FADS2 WILD-TYPE" "FADS2 WILD-TYPE" "FADS2 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"FADS2 WILD-TYPE" "FADS2 WILD-TYPE" "FADS2 WILD-TYPE" "FADS2 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"FADS2 WILD-TYPE" "FADS2 WILD-TYPE" "FADS2 WILD-TYPE" "FADS2 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"FADS2 WILD-TYPE" "FADS2 WILD-TYPE" "FADS2 WILD-TYPE" "FADS2 WILD-TYPE" 
     TCGA-US-A77J 
"FADS2 WILD-TYPE" 
[1] "hr=" "3.2"
D51V2, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  FADS2 MUTATED          0        2         4         4         1        0
  FADS2 WILD-TYPE        1        2         7        47         1        3
D51V3, multiclass
                 vv
clus              T1+T2 T3+T4
  FADS2 MUTATED       2     9
  FADS2 WILD-TYPE     4    57
D51V4, multiclass
       clus
vv      FADS2 MUTATED FADS2 WILD-TYPE
  T1+T2             2               4
  T3+T4             9              57
D51V5, binary
                 cls
clus               0  1
  FADS2 MUTATED    7  4
  FADS2 WILD-TYPE 10 50
[1] "tbl2"
                 cls
clus              [,1] [,2]
  FADS2 MUTATED      7    4
  FADS2 WILD-TYPE   10   50
   clus
vv  FADS2 MUTATED FADS2 WILD-TYPE
  0             7              10
  1             4              50
                 vv
clus              M0 M1 MX
  FADS2 MUTATED    7  0  4
  FADS2 WILD-TYPE 32  3 26
D51V6, multiclass
    clus
vv   FADS2 MUTATED FADS2 WILD-TYPE
  M0             7              32
  M1             0               3
  MX             4              26
D51V7, binary
                 cls
clus               0  1
  FADS2 MUTATED    2  9
  FADS2 WILD-TYPE 34 27
[1] "tbl2"
                 cls
clus              [,1] [,2]
  FADS2 MUTATED      2    9
  FADS2 WILD-TYPE   34   27
        clus
vv       FADS2 MUTATED FADS2 WILD-TYPE
  FEMALE             2              34
  MALE               9              27
                 vv
clus              PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  FADS2 MUTATED                                    11
  FADS2 WILD-TYPE                                  54
                 vv
clus              PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  FADS2 MUTATED                                       0
  FADS2 WILD-TYPE                                     4
                 vv
clus              PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  FADS2 MUTATED                                                  0
  FADS2 WILD-TYPE                                                2
D51V8, multiclass
                                                  clus
vv                                                 FADS2 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                         11
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                        0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA             0
                                                  clus
vv                                                 FADS2 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                           54
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                          4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA               2
D51V9, continuous
[1] "Remove cluster labels:" "FADS2 MUTATED"         
clus
  FADS2 MUTATED FADS2 WILD-TYPE 
              1              21 
     TCGA-F2-6880      TCGA-FB-A4P5      TCGA-FB-A5VM      TCGA-FB-A78T 
"FADS2 WILD-TYPE" "FADS2 WILD-TYPE" "FADS2 WILD-TYPE" "FADS2 WILD-TYPE" 
     TCGA-FB-A7DR      TCGA-H6-8124      TCGA-H6-A45N      TCGA-H8-A6C1 
"FADS2 WILD-TYPE" "FADS2 WILD-TYPE" "FADS2 WILD-TYPE" "FADS2 WILD-TYPE" 
     TCGA-IB-7644      TCGA-IB-7649      TCGA-IB-7651      TCGA-IB-7885 
"FADS2 WILD-TYPE" "FADS2 WILD-TYPE" "FADS2 WILD-TYPE" "FADS2 WILD-TYPE" 
     TCGA-IB-7886      TCGA-IB-7887      TCGA-IB-7891      TCGA-IB-8126 
"FADS2 WILD-TYPE" "FADS2 WILD-TYPE" "FADS2 WILD-TYPE" "FADS2 WILD-TYPE" 
     TCGA-IB-8127      TCGA-IB-A5SS      TCGA-IB-A6UG      TCGA-LB-A7SX 
"FADS2 WILD-TYPE" "FADS2 WILD-TYPE" "FADS2 WILD-TYPE" "FADS2 WILD-TYPE" 
     TCGA-OE-A75W 
"FADS2 WILD-TYPE" 
D51V10, continuous
[1] "Remove cluster labels:" "FADS2 MUTATED"         
clus
  FADS2 MUTATED FADS2 WILD-TYPE 
              1              18 
     TCGA-FB-A4P5      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"FADS2 WILD-TYPE" "FADS2 WILD-TYPE" "FADS2 WILD-TYPE" "FADS2 WILD-TYPE" 
     TCGA-H6-8124      TCGA-H8-A6C1      TCGA-IB-7644      TCGA-IB-7649 
"FADS2 WILD-TYPE" "FADS2 WILD-TYPE" "FADS2 WILD-TYPE" "FADS2 WILD-TYPE" 
     TCGA-IB-7651      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7891 
"FADS2 WILD-TYPE" "FADS2 WILD-TYPE" "FADS2 WILD-TYPE" "FADS2 WILD-TYPE" 
     TCGA-IB-8126      TCGA-IB-8127      TCGA-IB-A5SS      TCGA-IB-A6UG 
"FADS2 WILD-TYPE" "FADS2 WILD-TYPE" "FADS2 WILD-TYPE" "FADS2 WILD-TYPE" 
     TCGA-LB-A7SX      TCGA-OE-A75W 
"FADS2 WILD-TYPE" "FADS2 WILD-TYPE" 
                 vv
clus              R0 R1 RX
  FADS2 MUTATED    9  1  0
  FADS2 WILD-TYPE 33 23  2
D51V11, multiclass
    clus
vv   FADS2 MUTATED FADS2 WILD-TYPE
  R0             9              33
  R1             1              23
  RX             0               2
D51V12, continuous

Clustering(52) Variable = SMG7 MUTATION ANALYSIS
D52V1, survival
                sevent
clus2             0  1
  SMG7 MUTATED    2  3
  SMG7 WILD-TYPE 38 26
  SMG7 MUTATED SMG7 WILD-TYPE 
             5             64 
  SMG7 MUTATED SMG7 WILD-TYPE 
             3             26 
$`SMG7 MUTATED`
TCGA-F2-6879 TCGA-H6-8124 TCGA-HZ-8638 TCGA-IB-7651 TCGA-IB-7888 
       10.98        12.89         2.99        19.82        43.79 

$`SMG7 WILD-TYPE`
TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H TCGA-FB-A4P5 
        9.70        11.84         7.10         5.03        19.27         0.13 
TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR TCGA-FZ-5920 
       11.93        12.66         2.47         0.03         5.46         2.01 
TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7289 TCGA-HZ-7918 
       36.20        20.81         7.66        13.02         7.89         0.92 
TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 
        0.66         0.13         0.26        12.13        11.87         0.26 
TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 
        0.62         0.79         0.69         3.95         0.92         0.53 
TCGA-HZ-8636 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 
        0.16         0.76         0.95         6.38         1.51        11.41 
TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7652 TCGA-IB-7885 
       49.38         4.77        21.90        15.35        15.65        27.98 
TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-7893 
        4.04         3.62        15.81        19.66        16.04         3.85 
TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ 
       15.98         0.56        17.16        10.82         9.86         7.20 
TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W TCGA-PZ-A5RE 
       15.12         0.26         1.35         4.18         3.62         8.12 
TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
       13.68        16.80        14.14        18.67 

  SMG7 MUTATED SMG7 WILD-TYPE 
          2.99           0.03 
  SMG7 MUTATED SMG7 WILD-TYPE 
         43.79          49.38 
  SMG7 MUTATED SMG7 WILD-TYPE 
         12.89           7.15 
[1] "3.0 - 43.8 (12.9)" "0.0 - 49.4 (7.2)" 
    TCGA-F2-6879     TCGA-F2-6880     TCGA-F2-7273     TCGA-F2-7276 
  "SMG7 MUTATED" "SMG7 WILD-TYPE" "SMG7 WILD-TYPE" "SMG7 WILD-TYPE" 
    TCGA-F2-A44G     TCGA-F2-A44H     TCGA-FB-A4P5     TCGA-FB-A4P6 
"SMG7 WILD-TYPE" "SMG7 WILD-TYPE" "SMG7 WILD-TYPE" "SMG7 WILD-TYPE" 
    TCGA-FB-A545     TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-FB-A7DR 
"SMG7 WILD-TYPE" "SMG7 WILD-TYPE" "SMG7 WILD-TYPE" "SMG7 WILD-TYPE" 
    TCGA-FZ-5920     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-H6-8124 
"SMG7 WILD-TYPE" "SMG7 WILD-TYPE" "SMG7 WILD-TYPE"   "SMG7 MUTATED" 
    TCGA-H6-A45N     TCGA-H8-A6C1     TCGA-HZ-7289     TCGA-HZ-7918 
"SMG7 WILD-TYPE" "SMG7 WILD-TYPE" "SMG7 WILD-TYPE" "SMG7 WILD-TYPE" 
    TCGA-HZ-7919     TCGA-HZ-7922     TCGA-HZ-7923     TCGA-HZ-7924 
"SMG7 WILD-TYPE" "SMG7 WILD-TYPE" "SMG7 WILD-TYPE" "SMG7 WILD-TYPE" 
    TCGA-HZ-7925     TCGA-HZ-7926     TCGA-HZ-8001     TCGA-HZ-8002 
"SMG7 WILD-TYPE" "SMG7 WILD-TYPE" "SMG7 WILD-TYPE" "SMG7 WILD-TYPE" 
    TCGA-HZ-8003     TCGA-HZ-8005     TCGA-HZ-8315     TCGA-HZ-8317 
"SMG7 WILD-TYPE" "SMG7 WILD-TYPE" "SMG7 WILD-TYPE" "SMG7 WILD-TYPE" 
    TCGA-HZ-8636     TCGA-HZ-8638     TCGA-HZ-A49G     TCGA-HZ-A49H 
"SMG7 WILD-TYPE"   "SMG7 MUTATED" "SMG7 WILD-TYPE" "SMG7 WILD-TYPE" 
    TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-IB-7644     TCGA-IB-7645 
"SMG7 WILD-TYPE" "SMG7 WILD-TYPE" "SMG7 WILD-TYPE" "SMG7 WILD-TYPE" 
    TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7651 
"SMG7 WILD-TYPE" "SMG7 WILD-TYPE" "SMG7 WILD-TYPE"   "SMG7 MUTATED" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887 
"SMG7 WILD-TYPE" "SMG7 WILD-TYPE" "SMG7 WILD-TYPE" "SMG7 WILD-TYPE" 
    TCGA-IB-7888     TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891 
  "SMG7 MUTATED" "SMG7 WILD-TYPE" "SMG7 WILD-TYPE" "SMG7 WILD-TYPE" 
    TCGA-IB-7893     TCGA-IB-7897     TCGA-IB-8126     TCGA-IB-8127 
"SMG7 WILD-TYPE" "SMG7 WILD-TYPE" "SMG7 WILD-TYPE" "SMG7 WILD-TYPE" 
    TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS 
"SMG7 WILD-TYPE" "SMG7 WILD-TYPE" "SMG7 WILD-TYPE" "SMG7 WILD-TYPE" 
    TCGA-IB-A5ST     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
"SMG7 WILD-TYPE" "SMG7 WILD-TYPE" "SMG7 WILD-TYPE" "SMG7 WILD-TYPE" 
    TCGA-PZ-A5RE     TCGA-Q3-A5QY     TCGA-US-A779     TCGA-US-A77E 
"SMG7 WILD-TYPE" "SMG7 WILD-TYPE" "SMG7 WILD-TYPE" "SMG7 WILD-TYPE" 
    TCGA-US-A77J 
"SMG7 WILD-TYPE" 
    TCGA-F2-6879     TCGA-F2-6880     TCGA-F2-7273     TCGA-F2-7276 
  "SMG7 MUTATED" "SMG7 WILD-TYPE" "SMG7 WILD-TYPE" "SMG7 WILD-TYPE" 
    TCGA-F2-A44G     TCGA-F2-A44H     TCGA-FB-A4P5     TCGA-FB-A4P6 
"SMG7 WILD-TYPE" "SMG7 WILD-TYPE" "SMG7 WILD-TYPE" "SMG7 WILD-TYPE" 
    TCGA-FB-A545     TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-FB-A7DR 
"SMG7 WILD-TYPE" "SMG7 WILD-TYPE" "SMG7 WILD-TYPE" "SMG7 WILD-TYPE" 
    TCGA-FZ-5920     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-H6-8124 
"SMG7 WILD-TYPE" "SMG7 WILD-TYPE" "SMG7 WILD-TYPE"   "SMG7 MUTATED" 
    TCGA-H6-A45N     TCGA-H8-A6C1     TCGA-HZ-7289     TCGA-HZ-7918 
"SMG7 WILD-TYPE" "SMG7 WILD-TYPE" "SMG7 WILD-TYPE" "SMG7 WILD-TYPE" 
    TCGA-HZ-7919     TCGA-HZ-7922     TCGA-HZ-7923     TCGA-HZ-7924 
"SMG7 WILD-TYPE" "SMG7 WILD-TYPE" "SMG7 WILD-TYPE" "SMG7 WILD-TYPE" 
    TCGA-HZ-7925     TCGA-HZ-7926     TCGA-HZ-8001     TCGA-HZ-8002 
"SMG7 WILD-TYPE" "SMG7 WILD-TYPE" "SMG7 WILD-TYPE" "SMG7 WILD-TYPE" 
    TCGA-HZ-8003     TCGA-HZ-8005     TCGA-HZ-8315     TCGA-HZ-8317 
"SMG7 WILD-TYPE" "SMG7 WILD-TYPE" "SMG7 WILD-TYPE" "SMG7 WILD-TYPE" 
    TCGA-HZ-8636     TCGA-HZ-8638     TCGA-HZ-A49G     TCGA-HZ-A49H 
"SMG7 WILD-TYPE"   "SMG7 MUTATED" "SMG7 WILD-TYPE" "SMG7 WILD-TYPE" 
    TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-IB-7644     TCGA-IB-7645 
"SMG7 WILD-TYPE" "SMG7 WILD-TYPE" "SMG7 WILD-TYPE" "SMG7 WILD-TYPE" 
    TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7651 
"SMG7 WILD-TYPE" "SMG7 WILD-TYPE" "SMG7 WILD-TYPE"   "SMG7 MUTATED" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887 
"SMG7 WILD-TYPE" "SMG7 WILD-TYPE" "SMG7 WILD-TYPE" "SMG7 WILD-TYPE" 
    TCGA-IB-7888     TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891 
  "SMG7 MUTATED" "SMG7 WILD-TYPE" "SMG7 WILD-TYPE" "SMG7 WILD-TYPE" 
    TCGA-IB-7893     TCGA-IB-7897     TCGA-IB-8126     TCGA-IB-8127 
"SMG7 WILD-TYPE" "SMG7 WILD-TYPE" "SMG7 WILD-TYPE" "SMG7 WILD-TYPE" 
    TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS 
"SMG7 WILD-TYPE" "SMG7 WILD-TYPE" "SMG7 WILD-TYPE" "SMG7 WILD-TYPE" 
    TCGA-IB-A5ST     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
"SMG7 WILD-TYPE" "SMG7 WILD-TYPE" "SMG7 WILD-TYPE" "SMG7 WILD-TYPE" 
    TCGA-PZ-A5RE     TCGA-Q3-A5QY     TCGA-US-A779     TCGA-US-A77E 
"SMG7 WILD-TYPE" "SMG7 WILD-TYPE" "SMG7 WILD-TYPE" "SMG7 WILD-TYPE" 
    TCGA-US-A77J 
"SMG7 WILD-TYPE" 
    TCGA-F2-6879     TCGA-F2-6880     TCGA-F2-7273     TCGA-F2-7276 
  "SMG7 MUTATED" "SMG7 WILD-TYPE" "SMG7 WILD-TYPE" "SMG7 WILD-TYPE" 
    TCGA-F2-A44G     TCGA-F2-A44H     TCGA-FB-A4P5     TCGA-FB-A4P6 
"SMG7 WILD-TYPE" "SMG7 WILD-TYPE" "SMG7 WILD-TYPE" "SMG7 WILD-TYPE" 
    TCGA-FB-A545     TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-FB-A7DR 
"SMG7 WILD-TYPE" "SMG7 WILD-TYPE" "SMG7 WILD-TYPE" "SMG7 WILD-TYPE" 
    TCGA-FZ-5920     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-H6-8124 
"SMG7 WILD-TYPE" "SMG7 WILD-TYPE" "SMG7 WILD-TYPE"   "SMG7 MUTATED" 
    TCGA-H6-A45N     TCGA-H8-A6C1     TCGA-HZ-7289     TCGA-HZ-7918 
"SMG7 WILD-TYPE" "SMG7 WILD-TYPE" "SMG7 WILD-TYPE" "SMG7 WILD-TYPE" 
    TCGA-HZ-7919     TCGA-HZ-7922     TCGA-HZ-7923     TCGA-HZ-7924 
"SMG7 WILD-TYPE" "SMG7 WILD-TYPE" "SMG7 WILD-TYPE" "SMG7 WILD-TYPE" 
    TCGA-HZ-7925     TCGA-HZ-7926     TCGA-HZ-8001     TCGA-HZ-8002 
"SMG7 WILD-TYPE" "SMG7 WILD-TYPE" "SMG7 WILD-TYPE" "SMG7 WILD-TYPE" 
    TCGA-HZ-8003     TCGA-HZ-8005     TCGA-HZ-8315     TCGA-HZ-8317 
"SMG7 WILD-TYPE" "SMG7 WILD-TYPE" "SMG7 WILD-TYPE" "SMG7 WILD-TYPE" 
    TCGA-HZ-8636     TCGA-HZ-8638     TCGA-HZ-A49G     TCGA-HZ-A49H 
"SMG7 WILD-TYPE"   "SMG7 MUTATED" "SMG7 WILD-TYPE" "SMG7 WILD-TYPE" 
    TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-IB-7644     TCGA-IB-7645 
"SMG7 WILD-TYPE" "SMG7 WILD-TYPE" "SMG7 WILD-TYPE" "SMG7 WILD-TYPE" 
    TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7651 
"SMG7 WILD-TYPE" "SMG7 WILD-TYPE" "SMG7 WILD-TYPE"   "SMG7 MUTATED" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887 
"SMG7 WILD-TYPE" "SMG7 WILD-TYPE" "SMG7 WILD-TYPE" "SMG7 WILD-TYPE" 
    TCGA-IB-7888     TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891 
  "SMG7 MUTATED" "SMG7 WILD-TYPE" "SMG7 WILD-TYPE" "SMG7 WILD-TYPE" 
    TCGA-IB-7893     TCGA-IB-7897     TCGA-IB-8126     TCGA-IB-8127 
"SMG7 WILD-TYPE" "SMG7 WILD-TYPE" "SMG7 WILD-TYPE" "SMG7 WILD-TYPE" 
    TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS 
"SMG7 WILD-TYPE" "SMG7 WILD-TYPE" "SMG7 WILD-TYPE" "SMG7 WILD-TYPE" 
    TCGA-IB-A5ST     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
"SMG7 WILD-TYPE" "SMG7 WILD-TYPE" "SMG7 WILD-TYPE" "SMG7 WILD-TYPE" 
    TCGA-PZ-A5RE     TCGA-Q3-A5QY     TCGA-US-A779     TCGA-US-A77E 
"SMG7 WILD-TYPE" "SMG7 WILD-TYPE" "SMG7 WILD-TYPE" "SMG7 WILD-TYPE" 
    TCGA-US-A77J 
"SMG7 WILD-TYPE" 
[1] "hr=" "1.5"
D52V2, continuous
                vv
clus             STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  SMG7 MUTATED          1        0         1         3         0        0
  SMG7 WILD-TYPE        0        4        10        48         2        3
D52V3, multiclass
                vv
clus             T1+T2 T3+T4
  SMG7 MUTATED       1     4
  SMG7 WILD-TYPE     5    62
D52V4, multiclass
       clus
vv      SMG7 MUTATED SMG7 WILD-TYPE
  T1+T2            1              5
  T3+T4            4             62
D52V5, binary
                cls
clus              0  1
  SMG7 MUTATED    2  3
  SMG7 WILD-TYPE 15 51
[1] "tbl2"
                cls
clus             [,1] [,2]
  SMG7 MUTATED      2    3
  SMG7 WILD-TYPE   15   51
   clus
vv  SMG7 MUTATED SMG7 WILD-TYPE
  0            2             15
  1            3             51
                vv
clus             M0 M1 MX
  SMG7 MUTATED    4  0  1
  SMG7 WILD-TYPE 35  3 29
D52V6, multiclass
    clus
vv   SMG7 MUTATED SMG7 WILD-TYPE
  M0            4             35
  M1            0              3
  MX            1             29
D52V7, binary
                cls
clus              0  1
  SMG7 MUTATED    4  1
  SMG7 WILD-TYPE 32 35
[1] "tbl2"
                cls
clus             [,1] [,2]
  SMG7 MUTATED      4    1
  SMG7 WILD-TYPE   32   35
        clus
vv       SMG7 MUTATED SMG7 WILD-TYPE
  FEMALE            4             32
  MALE              1             35
                vv
clus             PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  SMG7 MUTATED                                     3
  SMG7 WILD-TYPE                                  62
                vv
clus             PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  SMG7 MUTATED                                       0
  SMG7 WILD-TYPE                                     4
                vv
clus             PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  SMG7 MUTATED                                                  1
  SMG7 WILD-TYPE                                                1
D52V8, multiclass
                                                  clus
vv                                                 SMG7 MUTATED SMG7 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                         3             62
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                       0              4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA            1              1
D52V9, continuous
[1] "Remove cluster labels:" "SMG7 MUTATED"          
clus
  SMG7 MUTATED SMG7 WILD-TYPE 
             2             20 
    TCGA-F2-6880     TCGA-FB-A4P5     TCGA-FB-A4P6     TCGA-FB-A5VM 
"SMG7 WILD-TYPE" "SMG7 WILD-TYPE" "SMG7 WILD-TYPE" "SMG7 WILD-TYPE" 
    TCGA-FB-A78T     TCGA-FB-A7DR     TCGA-H6-A45N     TCGA-H8-A6C1 
"SMG7 WILD-TYPE" "SMG7 WILD-TYPE" "SMG7 WILD-TYPE" "SMG7 WILD-TYPE" 
    TCGA-IB-7644     TCGA-IB-7649     TCGA-IB-7885     TCGA-IB-7886 
"SMG7 WILD-TYPE" "SMG7 WILD-TYPE" "SMG7 WILD-TYPE" "SMG7 WILD-TYPE" 
    TCGA-IB-7887     TCGA-IB-7891     TCGA-IB-8126     TCGA-IB-8127 
"SMG7 WILD-TYPE" "SMG7 WILD-TYPE" "SMG7 WILD-TYPE" "SMG7 WILD-TYPE" 
    TCGA-IB-A5SS     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
"SMG7 WILD-TYPE" "SMG7 WILD-TYPE" "SMG7 WILD-TYPE" "SMG7 WILD-TYPE" 
D52V10, continuous
[1] "Remove cluster labels:" "SMG7 MUTATED"          
clus
  SMG7 MUTATED SMG7 WILD-TYPE 
             2             17 
    TCGA-FB-A4P5     TCGA-FB-A4P6     TCGA-FB-A5VM     TCGA-FB-A78T 
"SMG7 WILD-TYPE" "SMG7 WILD-TYPE" "SMG7 WILD-TYPE" "SMG7 WILD-TYPE" 
    TCGA-FB-A7DR     TCGA-H8-A6C1     TCGA-IB-7644     TCGA-IB-7649 
"SMG7 WILD-TYPE" "SMG7 WILD-TYPE" "SMG7 WILD-TYPE" "SMG7 WILD-TYPE" 
    TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7891     TCGA-IB-8126 
"SMG7 WILD-TYPE" "SMG7 WILD-TYPE" "SMG7 WILD-TYPE" "SMG7 WILD-TYPE" 
    TCGA-IB-8127     TCGA-IB-A5SS     TCGA-IB-A6UG     TCGA-LB-A7SX 
"SMG7 WILD-TYPE" "SMG7 WILD-TYPE" "SMG7 WILD-TYPE" "SMG7 WILD-TYPE" 
    TCGA-OE-A75W 
"SMG7 WILD-TYPE" 
                vv
clus             R0 R1 RX
  SMG7 MUTATED    5  0  0
  SMG7 WILD-TYPE 37 24  2
D52V11, multiclass
    clus
vv   SMG7 MUTATED SMG7 WILD-TYPE
  R0            5             37
  R1            0             24
  RX            0              2
D52V12, continuous

Clustering(53) Variable = SLC39A5 MUTATION ANALYSIS
D53V1, survival
                   sevent
clus2                0  1
  SLC39A5 MUTATED    6  2
  SLC39A5 WILD-TYPE 34 27
  SLC39A5 MUTATED SLC39A5 WILD-TYPE 
                8                61 
  SLC39A5 MUTATED SLC39A5 WILD-TYPE 
                2                27 
$`SLC39A5 MUTATED`
TCGA-F2-6880 TCGA-F2-7276 TCGA-HZ-7925 TCGA-HZ-8638 TCGA-HZ-A4BH TCGA-IB-7891 
        9.70         7.10        11.87         2.99         6.38        16.04 
TCGA-IB-A6UG TCGA-Q3-A5QY 
        1.35        13.68 

$`SLC39A5 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-7273 TCGA-F2-A44G TCGA-F2-A44H TCGA-FB-A4P5 TCGA-FB-A4P6 
       10.98        11.84         5.03        19.27         0.13        11.93 
TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR TCGA-FZ-5920 TCGA-FZ-5922 
       12.66         2.47         0.03         5.46         2.01        36.20 
TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7289 TCGA-HZ-7918 
       20.81        12.89         7.66        13.02         7.89         0.92 
TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7926 TCGA-HZ-8001 
        0.66         0.13         0.26        12.13         0.26         0.62 
TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8636 
        0.79         0.69         3.95         0.92         0.53         0.16 
TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7646 
        0.76         0.95         1.51        11.41        49.38         4.77 
TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7651 TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7886 
       21.90        15.35        19.82        15.65        27.98         4.04 
TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7893 TCGA-IB-7897 
        3.62        43.79        15.81        19.66         3.85        15.98 
TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS 
        0.56        17.16        10.82         9.86         7.20        15.12 
TCGA-IB-A5ST TCGA-LB-A7SX TCGA-OE-A75W TCGA-PZ-A5RE TCGA-US-A779 TCGA-US-A77E 
        0.26         4.18         3.62         8.12        16.80        14.14 
TCGA-US-A77J 
       18.67 

  SLC39A5 MUTATED SLC39A5 WILD-TYPE 
             1.35              0.03 
  SLC39A5 MUTATED SLC39A5 WILD-TYPE 
            16.04             49.38 
  SLC39A5 MUTATED SLC39A5 WILD-TYPE 
             8.40              7.66 
[1] "1.4 - 16.0 (8.4)" "0.0 - 49.4 (7.7)"
       TCGA-F2-6879        TCGA-F2-6880        TCGA-F2-7273        TCGA-F2-7276 
"SLC39A5 WILD-TYPE"   "SLC39A5 MUTATED" "SLC39A5 WILD-TYPE"   "SLC39A5 MUTATED" 
       TCGA-F2-A44G        TCGA-F2-A44H        TCGA-FB-A4P5        TCGA-FB-A4P6 
"SLC39A5 WILD-TYPE" "SLC39A5 WILD-TYPE" "SLC39A5 WILD-TYPE" "SLC39A5 WILD-TYPE" 
       TCGA-FB-A545        TCGA-FB-A5VM        TCGA-FB-A78T        TCGA-FB-A7DR 
"SLC39A5 WILD-TYPE" "SLC39A5 WILD-TYPE" "SLC39A5 WILD-TYPE" "SLC39A5 WILD-TYPE" 
       TCGA-FZ-5920        TCGA-FZ-5922        TCGA-FZ-5923        TCGA-H6-8124 
"SLC39A5 WILD-TYPE" "SLC39A5 WILD-TYPE" "SLC39A5 WILD-TYPE" "SLC39A5 WILD-TYPE" 
       TCGA-H6-A45N        TCGA-H8-A6C1        TCGA-HZ-7289        TCGA-HZ-7918 
"SLC39A5 WILD-TYPE" "SLC39A5 WILD-TYPE" "SLC39A5 WILD-TYPE" "SLC39A5 WILD-TYPE" 
       TCGA-HZ-7919        TCGA-HZ-7922        TCGA-HZ-7923        TCGA-HZ-7924 
"SLC39A5 WILD-TYPE" "SLC39A5 WILD-TYPE" "SLC39A5 WILD-TYPE" "SLC39A5 WILD-TYPE" 
       TCGA-HZ-7925        TCGA-HZ-7926        TCGA-HZ-8001        TCGA-HZ-8002 
  "SLC39A5 MUTATED" "SLC39A5 WILD-TYPE" "SLC39A5 WILD-TYPE" "SLC39A5 WILD-TYPE" 
       TCGA-HZ-8003        TCGA-HZ-8005        TCGA-HZ-8315        TCGA-HZ-8317 
"SLC39A5 WILD-TYPE" "SLC39A5 WILD-TYPE" "SLC39A5 WILD-TYPE" "SLC39A5 WILD-TYPE" 
       TCGA-HZ-8636        TCGA-HZ-8638        TCGA-HZ-A49G        TCGA-HZ-A49H 
"SLC39A5 WILD-TYPE"   "SLC39A5 MUTATED" "SLC39A5 WILD-TYPE" "SLC39A5 WILD-TYPE" 
       TCGA-HZ-A4BH        TCGA-HZ-A4BK        TCGA-IB-7644        TCGA-IB-7645 
  "SLC39A5 MUTATED" "SLC39A5 WILD-TYPE" "SLC39A5 WILD-TYPE" "SLC39A5 WILD-TYPE" 
       TCGA-IB-7646        TCGA-IB-7647        TCGA-IB-7649        TCGA-IB-7651 
"SLC39A5 WILD-TYPE" "SLC39A5 WILD-TYPE" "SLC39A5 WILD-TYPE" "SLC39A5 WILD-TYPE" 
       TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-7886        TCGA-IB-7887 
"SLC39A5 WILD-TYPE" "SLC39A5 WILD-TYPE" "SLC39A5 WILD-TYPE" "SLC39A5 WILD-TYPE" 
       TCGA-IB-7888        TCGA-IB-7889        TCGA-IB-7890        TCGA-IB-7891 
"SLC39A5 WILD-TYPE" "SLC39A5 WILD-TYPE" "SLC39A5 WILD-TYPE"   "SLC39A5 MUTATED" 
       TCGA-IB-7893        TCGA-IB-7897        TCGA-IB-8126        TCGA-IB-8127 
"SLC39A5 WILD-TYPE" "SLC39A5 WILD-TYPE" "SLC39A5 WILD-TYPE" "SLC39A5 WILD-TYPE" 
       TCGA-IB-A5SO        TCGA-IB-A5SP        TCGA-IB-A5SQ        TCGA-IB-A5SS 
"SLC39A5 WILD-TYPE" "SLC39A5 WILD-TYPE" "SLC39A5 WILD-TYPE" "SLC39A5 WILD-TYPE" 
       TCGA-IB-A5ST        TCGA-IB-A6UG        TCGA-LB-A7SX        TCGA-OE-A75W 
"SLC39A5 WILD-TYPE"   "SLC39A5 MUTATED" "SLC39A5 WILD-TYPE" "SLC39A5 WILD-TYPE" 
       TCGA-PZ-A5RE        TCGA-Q3-A5QY        TCGA-US-A779        TCGA-US-A77E 
"SLC39A5 WILD-TYPE"   "SLC39A5 MUTATED" "SLC39A5 WILD-TYPE" "SLC39A5 WILD-TYPE" 
       TCGA-US-A77J 
"SLC39A5 WILD-TYPE" 
       TCGA-F2-6879        TCGA-F2-6880        TCGA-F2-7273        TCGA-F2-7276 
"SLC39A5 WILD-TYPE"   "SLC39A5 MUTATED" "SLC39A5 WILD-TYPE"   "SLC39A5 MUTATED" 
       TCGA-F2-A44G        TCGA-F2-A44H        TCGA-FB-A4P5        TCGA-FB-A4P6 
"SLC39A5 WILD-TYPE" "SLC39A5 WILD-TYPE" "SLC39A5 WILD-TYPE" "SLC39A5 WILD-TYPE" 
       TCGA-FB-A545        TCGA-FB-A5VM        TCGA-FB-A78T        TCGA-FB-A7DR 
"SLC39A5 WILD-TYPE" "SLC39A5 WILD-TYPE" "SLC39A5 WILD-TYPE" "SLC39A5 WILD-TYPE" 
       TCGA-FZ-5920        TCGA-FZ-5922        TCGA-FZ-5923        TCGA-H6-8124 
"SLC39A5 WILD-TYPE" "SLC39A5 WILD-TYPE" "SLC39A5 WILD-TYPE" "SLC39A5 WILD-TYPE" 
       TCGA-H6-A45N        TCGA-H8-A6C1        TCGA-HZ-7289        TCGA-HZ-7918 
"SLC39A5 WILD-TYPE" "SLC39A5 WILD-TYPE" "SLC39A5 WILD-TYPE" "SLC39A5 WILD-TYPE" 
       TCGA-HZ-7919        TCGA-HZ-7922        TCGA-HZ-7923        TCGA-HZ-7924 
"SLC39A5 WILD-TYPE" "SLC39A5 WILD-TYPE" "SLC39A5 WILD-TYPE" "SLC39A5 WILD-TYPE" 
       TCGA-HZ-7925        TCGA-HZ-7926        TCGA-HZ-8001        TCGA-HZ-8002 
  "SLC39A5 MUTATED" "SLC39A5 WILD-TYPE" "SLC39A5 WILD-TYPE" "SLC39A5 WILD-TYPE" 
       TCGA-HZ-8003        TCGA-HZ-8005        TCGA-HZ-8315        TCGA-HZ-8317 
"SLC39A5 WILD-TYPE" "SLC39A5 WILD-TYPE" "SLC39A5 WILD-TYPE" "SLC39A5 WILD-TYPE" 
       TCGA-HZ-8636        TCGA-HZ-8638        TCGA-HZ-A49G        TCGA-HZ-A49H 
"SLC39A5 WILD-TYPE"   "SLC39A5 MUTATED" "SLC39A5 WILD-TYPE" "SLC39A5 WILD-TYPE" 
       TCGA-HZ-A4BH        TCGA-HZ-A4BK        TCGA-IB-7644        TCGA-IB-7645 
  "SLC39A5 MUTATED" "SLC39A5 WILD-TYPE" "SLC39A5 WILD-TYPE" "SLC39A5 WILD-TYPE" 
       TCGA-IB-7646        TCGA-IB-7647        TCGA-IB-7649        TCGA-IB-7651 
"SLC39A5 WILD-TYPE" "SLC39A5 WILD-TYPE" "SLC39A5 WILD-TYPE" "SLC39A5 WILD-TYPE" 
       TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-7886        TCGA-IB-7887 
"SLC39A5 WILD-TYPE" "SLC39A5 WILD-TYPE" "SLC39A5 WILD-TYPE" "SLC39A5 WILD-TYPE" 
       TCGA-IB-7888        TCGA-IB-7889        TCGA-IB-7890        TCGA-IB-7891 
"SLC39A5 WILD-TYPE" "SLC39A5 WILD-TYPE" "SLC39A5 WILD-TYPE"   "SLC39A5 MUTATED" 
       TCGA-IB-7893        TCGA-IB-7897        TCGA-IB-8126        TCGA-IB-8127 
"SLC39A5 WILD-TYPE" "SLC39A5 WILD-TYPE" "SLC39A5 WILD-TYPE" "SLC39A5 WILD-TYPE" 
       TCGA-IB-A5SO        TCGA-IB-A5SP        TCGA-IB-A5SQ        TCGA-IB-A5SS 
"SLC39A5 WILD-TYPE" "SLC39A5 WILD-TYPE" "SLC39A5 WILD-TYPE" "SLC39A5 WILD-TYPE" 
       TCGA-IB-A5ST        TCGA-IB-A6UG        TCGA-LB-A7SX        TCGA-OE-A75W 
"SLC39A5 WILD-TYPE"   "SLC39A5 MUTATED" "SLC39A5 WILD-TYPE" "SLC39A5 WILD-TYPE" 
       TCGA-PZ-A5RE        TCGA-Q3-A5QY        TCGA-US-A779        TCGA-US-A77E 
"SLC39A5 WILD-TYPE"   "SLC39A5 MUTATED" "SLC39A5 WILD-TYPE" "SLC39A5 WILD-TYPE" 
       TCGA-US-A77J 
"SLC39A5 WILD-TYPE" 
       TCGA-F2-6879        TCGA-F2-6880        TCGA-F2-7273        TCGA-F2-7276 
"SLC39A5 WILD-TYPE"   "SLC39A5 MUTATED" "SLC39A5 WILD-TYPE"   "SLC39A5 MUTATED" 
       TCGA-F2-A44G        TCGA-F2-A44H        TCGA-FB-A4P5        TCGA-FB-A4P6 
"SLC39A5 WILD-TYPE" "SLC39A5 WILD-TYPE" "SLC39A5 WILD-TYPE" "SLC39A5 WILD-TYPE" 
       TCGA-FB-A545        TCGA-FB-A5VM        TCGA-FB-A78T        TCGA-FB-A7DR 
"SLC39A5 WILD-TYPE" "SLC39A5 WILD-TYPE" "SLC39A5 WILD-TYPE" "SLC39A5 WILD-TYPE" 
       TCGA-FZ-5920        TCGA-FZ-5922        TCGA-FZ-5923        TCGA-H6-8124 
"SLC39A5 WILD-TYPE" "SLC39A5 WILD-TYPE" "SLC39A5 WILD-TYPE" "SLC39A5 WILD-TYPE" 
       TCGA-H6-A45N        TCGA-H8-A6C1        TCGA-HZ-7289        TCGA-HZ-7918 
"SLC39A5 WILD-TYPE" "SLC39A5 WILD-TYPE" "SLC39A5 WILD-TYPE" "SLC39A5 WILD-TYPE" 
       TCGA-HZ-7919        TCGA-HZ-7922        TCGA-HZ-7923        TCGA-HZ-7924 
"SLC39A5 WILD-TYPE" "SLC39A5 WILD-TYPE" "SLC39A5 WILD-TYPE" "SLC39A5 WILD-TYPE" 
       TCGA-HZ-7925        TCGA-HZ-7926        TCGA-HZ-8001        TCGA-HZ-8002 
  "SLC39A5 MUTATED" "SLC39A5 WILD-TYPE" "SLC39A5 WILD-TYPE" "SLC39A5 WILD-TYPE" 
       TCGA-HZ-8003        TCGA-HZ-8005        TCGA-HZ-8315        TCGA-HZ-8317 
"SLC39A5 WILD-TYPE" "SLC39A5 WILD-TYPE" "SLC39A5 WILD-TYPE" "SLC39A5 WILD-TYPE" 
       TCGA-HZ-8636        TCGA-HZ-8638        TCGA-HZ-A49G        TCGA-HZ-A49H 
"SLC39A5 WILD-TYPE"   "SLC39A5 MUTATED" "SLC39A5 WILD-TYPE" "SLC39A5 WILD-TYPE" 
       TCGA-HZ-A4BH        TCGA-HZ-A4BK        TCGA-IB-7644        TCGA-IB-7645 
  "SLC39A5 MUTATED" "SLC39A5 WILD-TYPE" "SLC39A5 WILD-TYPE" "SLC39A5 WILD-TYPE" 
       TCGA-IB-7646        TCGA-IB-7647        TCGA-IB-7649        TCGA-IB-7651 
"SLC39A5 WILD-TYPE" "SLC39A5 WILD-TYPE" "SLC39A5 WILD-TYPE" "SLC39A5 WILD-TYPE" 
       TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-7886        TCGA-IB-7887 
"SLC39A5 WILD-TYPE" "SLC39A5 WILD-TYPE" "SLC39A5 WILD-TYPE" "SLC39A5 WILD-TYPE" 
       TCGA-IB-7888        TCGA-IB-7889        TCGA-IB-7890        TCGA-IB-7891 
"SLC39A5 WILD-TYPE" "SLC39A5 WILD-TYPE" "SLC39A5 WILD-TYPE"   "SLC39A5 MUTATED" 
       TCGA-IB-7893        TCGA-IB-7897        TCGA-IB-8126        TCGA-IB-8127 
"SLC39A5 WILD-TYPE" "SLC39A5 WILD-TYPE" "SLC39A5 WILD-TYPE" "SLC39A5 WILD-TYPE" 
       TCGA-IB-A5SO        TCGA-IB-A5SP        TCGA-IB-A5SQ        TCGA-IB-A5SS 
"SLC39A5 WILD-TYPE" "SLC39A5 WILD-TYPE" "SLC39A5 WILD-TYPE" "SLC39A5 WILD-TYPE" 
       TCGA-IB-A5ST        TCGA-IB-A6UG        TCGA-LB-A7SX        TCGA-OE-A75W 
"SLC39A5 WILD-TYPE"   "SLC39A5 MUTATED" "SLC39A5 WILD-TYPE" "SLC39A5 WILD-TYPE" 
       TCGA-PZ-A5RE        TCGA-Q3-A5QY        TCGA-US-A779        TCGA-US-A77E 
"SLC39A5 WILD-TYPE"   "SLC39A5 MUTATED" "SLC39A5 WILD-TYPE" "SLC39A5 WILD-TYPE" 
       TCGA-US-A77J 
"SLC39A5 WILD-TYPE" 
[1] "hr=" "1.1"
D53V2, continuous
                   vv
clus                STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  SLC39A5 MUTATED          1        0         0         8         0        0
  SLC39A5 WILD-TYPE        0        4        11        43         2        3
D53V3, multiclass
                   vv
clus                T1+T2 T3+T4
  SLC39A5 MUTATED       1     8
  SLC39A5 WILD-TYPE     5    58
D53V4, multiclass
       clus
vv      SLC39A5 MUTATED SLC39A5 WILD-TYPE
  T1+T2               1                 5
  T3+T4               8                58
D53V5, binary
                   cls
clus                 0  1
  SLC39A5 MUTATED    1  8
  SLC39A5 WILD-TYPE 16 46
[1] "tbl2"
                   cls
clus                [,1] [,2]
  SLC39A5 MUTATED      1    8
  SLC39A5 WILD-TYPE   16   46
   clus
vv  SLC39A5 MUTATED SLC39A5 WILD-TYPE
  0               1                16
  1               8                46
                   vv
clus                M0 M1 MX
  SLC39A5 MUTATED    4  0  5
  SLC39A5 WILD-TYPE 35  3 25
D53V6, multiclass
    clus
vv   SLC39A5 MUTATED SLC39A5 WILD-TYPE
  M0               4                35
  M1               0                 3
  MX               5                25
D53V7, binary
                   cls
clus                 0  1
  SLC39A5 MUTATED    2  7
  SLC39A5 WILD-TYPE 34 29
[1] "tbl2"
                   cls
clus                [,1] [,2]
  SLC39A5 MUTATED      2    7
  SLC39A5 WILD-TYPE   34   29
        clus
vv       SLC39A5 MUTATED SLC39A5 WILD-TYPE
  FEMALE               2                34
  MALE                 7                29
                   vv
clus                PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  SLC39A5 MUTATED                                     8
  SLC39A5 WILD-TYPE                                  57
                   vv
clus                PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  SLC39A5 MUTATED                                       0
  SLC39A5 WILD-TYPE                                     4
                   vv
clus                PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  SLC39A5 MUTATED                                                  1
  SLC39A5 WILD-TYPE                                                1
D53V8, multiclass
                                                  clus
vv                                                 SLC39A5 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                            8
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                          0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA               1
                                                  clus
vv                                                 SLC39A5 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                             57
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                            4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                 1
D53V9, continuous
D53V10, continuous
[1] "Remove cluster labels:" "SLC39A5 MUTATED"       
clus
  SLC39A5 MUTATED SLC39A5 WILD-TYPE 
                2                17 
       TCGA-FB-A4P5        TCGA-FB-A4P6        TCGA-FB-A5VM        TCGA-FB-A78T 
"SLC39A5 WILD-TYPE" "SLC39A5 WILD-TYPE" "SLC39A5 WILD-TYPE" "SLC39A5 WILD-TYPE" 
       TCGA-FB-A7DR        TCGA-H6-8124        TCGA-H8-A6C1        TCGA-IB-7644 
"SLC39A5 WILD-TYPE" "SLC39A5 WILD-TYPE" "SLC39A5 WILD-TYPE" "SLC39A5 WILD-TYPE" 
       TCGA-IB-7649        TCGA-IB-7651        TCGA-IB-7885        TCGA-IB-7886 
"SLC39A5 WILD-TYPE" "SLC39A5 WILD-TYPE" "SLC39A5 WILD-TYPE" "SLC39A5 WILD-TYPE" 
       TCGA-IB-8126        TCGA-IB-8127        TCGA-IB-A5SS        TCGA-LB-A7SX 
"SLC39A5 WILD-TYPE" "SLC39A5 WILD-TYPE" "SLC39A5 WILD-TYPE" "SLC39A5 WILD-TYPE" 
       TCGA-OE-A75W 
"SLC39A5 WILD-TYPE" 
                   vv
clus                R0 R1 RX
  SLC39A5 MUTATED    7  2  0
  SLC39A5 WILD-TYPE 35 22  2
D53V11, multiclass
    clus
vv   SLC39A5 MUTATED SLC39A5 WILD-TYPE
  R0               7                35
  R1               2                22
  RX               0                 2
D53V12, continuous

Clustering(54) Variable = MYH10 MUTATION ANALYSIS
D54V1, survival
                 sevent
clus2              0  1
  MYH10 MUTATED   10 10
  MYH10 WILD-TYPE 30 19
  MYH10 MUTATED MYH10 WILD-TYPE 
             20              49 
  MYH10 MUTATED MYH10 WILD-TYPE 
             10              19 
$`MYH10 MUTATED`
TCGA-F2-7273 TCGA-F2-A44G TCGA-FB-A4P6 TCGA-H6-A45N TCGA-HZ-7923 TCGA-HZ-7926 
       11.84         5.03        11.93         7.66         0.26         0.26 
TCGA-HZ-8003 TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BK 
        0.69         0.92         0.53         0.76         0.95         1.51 
TCGA-IB-7645 TCGA-IB-7649 TCGA-IB-7651 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7897 
       49.38        15.35        19.82         3.62        43.79        15.98 
TCGA-IB-8127 TCGA-US-A77J 
       17.16        18.67 

$`MYH10 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7276 TCGA-F2-A44H TCGA-FB-A4P5 TCGA-FB-A545 
       10.98         9.70         7.10        19.27         0.13        12.66 
TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR TCGA-FZ-5920 TCGA-FZ-5922 TCGA-FZ-5923 
        2.47         0.03         5.46         2.01        36.20        20.81 
TCGA-H6-8124 TCGA-H8-A6C1 TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7922 
       12.89        13.02         7.89         0.92         0.66         0.13 
TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8005 TCGA-HZ-8636 
       12.13        11.87         0.62         0.79         3.95         0.16 
TCGA-HZ-8638 TCGA-HZ-A4BH TCGA-IB-7644 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7652 
        2.99         6.38        11.41         4.77        21.90        15.65 
TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-7893 
       27.98         4.04        15.81        19.66        16.04         3.85 
TCGA-IB-8126 TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST 
        0.56        10.82         9.86         7.20        15.12         0.26 
TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 
        1.35         4.18         3.62         8.12        13.68        16.80 
TCGA-US-A77E 
       14.14 

  MYH10 MUTATED MYH10 WILD-TYPE 
           0.26            0.03 
  MYH10 MUTATED MYH10 WILD-TYPE 
          49.38           36.20 
  MYH10 MUTATED MYH10 WILD-TYPE 
          6.345           7.890 
[1] "0.3 - 49.4 (6.3)" "0.0 - 36.2 (7.9)"
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"MYH10 WILD-TYPE" "MYH10 WILD-TYPE"   "MYH10 MUTATED" "MYH10 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
  "MYH10 MUTATED" "MYH10 WILD-TYPE" "MYH10 WILD-TYPE"   "MYH10 MUTATED" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"MYH10 WILD-TYPE" "MYH10 WILD-TYPE" "MYH10 WILD-TYPE" "MYH10 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"MYH10 WILD-TYPE" "MYH10 WILD-TYPE" "MYH10 WILD-TYPE" "MYH10 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
  "MYH10 MUTATED" "MYH10 WILD-TYPE" "MYH10 WILD-TYPE" "MYH10 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"MYH10 WILD-TYPE" "MYH10 WILD-TYPE"   "MYH10 MUTATED" "MYH10 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"MYH10 WILD-TYPE"   "MYH10 MUTATED" "MYH10 WILD-TYPE" "MYH10 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
  "MYH10 MUTATED" "MYH10 WILD-TYPE"   "MYH10 MUTATED"   "MYH10 MUTATED" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"MYH10 WILD-TYPE" "MYH10 WILD-TYPE"   "MYH10 MUTATED"   "MYH10 MUTATED" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"MYH10 WILD-TYPE"   "MYH10 MUTATED" "MYH10 WILD-TYPE"   "MYH10 MUTATED" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"MYH10 WILD-TYPE" "MYH10 WILD-TYPE"   "MYH10 MUTATED"   "MYH10 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"MYH10 WILD-TYPE" "MYH10 WILD-TYPE" "MYH10 WILD-TYPE"   "MYH10 MUTATED" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
  "MYH10 MUTATED" "MYH10 WILD-TYPE" "MYH10 WILD-TYPE" "MYH10 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"MYH10 WILD-TYPE"   "MYH10 MUTATED" "MYH10 WILD-TYPE"   "MYH10 MUTATED" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"MYH10 WILD-TYPE" "MYH10 WILD-TYPE" "MYH10 WILD-TYPE" "MYH10 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"MYH10 WILD-TYPE" "MYH10 WILD-TYPE" "MYH10 WILD-TYPE" "MYH10 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"MYH10 WILD-TYPE" "MYH10 WILD-TYPE" "MYH10 WILD-TYPE" "MYH10 WILD-TYPE" 
     TCGA-US-A77J 
  "MYH10 MUTATED" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"MYH10 WILD-TYPE" "MYH10 WILD-TYPE"   "MYH10 MUTATED" "MYH10 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
  "MYH10 MUTATED" "MYH10 WILD-TYPE" "MYH10 WILD-TYPE"   "MYH10 MUTATED" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"MYH10 WILD-TYPE" "MYH10 WILD-TYPE" "MYH10 WILD-TYPE" "MYH10 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"MYH10 WILD-TYPE" "MYH10 WILD-TYPE" "MYH10 WILD-TYPE" "MYH10 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
  "MYH10 MUTATED" "MYH10 WILD-TYPE" "MYH10 WILD-TYPE" "MYH10 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"MYH10 WILD-TYPE" "MYH10 WILD-TYPE"   "MYH10 MUTATED" "MYH10 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"MYH10 WILD-TYPE"   "MYH10 MUTATED" "MYH10 WILD-TYPE" "MYH10 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
  "MYH10 MUTATED" "MYH10 WILD-TYPE"   "MYH10 MUTATED"   "MYH10 MUTATED" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"MYH10 WILD-TYPE" "MYH10 WILD-TYPE"   "MYH10 MUTATED"   "MYH10 MUTATED" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"MYH10 WILD-TYPE"   "MYH10 MUTATED" "MYH10 WILD-TYPE"   "MYH10 MUTATED" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"MYH10 WILD-TYPE" "MYH10 WILD-TYPE"   "MYH10 MUTATED"   "MYH10 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"MYH10 WILD-TYPE" "MYH10 WILD-TYPE" "MYH10 WILD-TYPE"   "MYH10 MUTATED" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
  "MYH10 MUTATED" "MYH10 WILD-TYPE" "MYH10 WILD-TYPE" "MYH10 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"MYH10 WILD-TYPE"   "MYH10 MUTATED" "MYH10 WILD-TYPE"   "MYH10 MUTATED" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"MYH10 WILD-TYPE" "MYH10 WILD-TYPE" "MYH10 WILD-TYPE" "MYH10 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"MYH10 WILD-TYPE" "MYH10 WILD-TYPE" "MYH10 WILD-TYPE" "MYH10 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"MYH10 WILD-TYPE" "MYH10 WILD-TYPE" "MYH10 WILD-TYPE" "MYH10 WILD-TYPE" 
     TCGA-US-A77J 
  "MYH10 MUTATED" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"MYH10 WILD-TYPE" "MYH10 WILD-TYPE"   "MYH10 MUTATED" "MYH10 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
  "MYH10 MUTATED" "MYH10 WILD-TYPE" "MYH10 WILD-TYPE"   "MYH10 MUTATED" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"MYH10 WILD-TYPE" "MYH10 WILD-TYPE" "MYH10 WILD-TYPE" "MYH10 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"MYH10 WILD-TYPE" "MYH10 WILD-TYPE" "MYH10 WILD-TYPE" "MYH10 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
  "MYH10 MUTATED" "MYH10 WILD-TYPE" "MYH10 WILD-TYPE" "MYH10 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"MYH10 WILD-TYPE" "MYH10 WILD-TYPE"   "MYH10 MUTATED" "MYH10 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"MYH10 WILD-TYPE"   "MYH10 MUTATED" "MYH10 WILD-TYPE" "MYH10 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
  "MYH10 MUTATED" "MYH10 WILD-TYPE"   "MYH10 MUTATED"   "MYH10 MUTATED" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"MYH10 WILD-TYPE" "MYH10 WILD-TYPE"   "MYH10 MUTATED"   "MYH10 MUTATED" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"MYH10 WILD-TYPE"   "MYH10 MUTATED" "MYH10 WILD-TYPE"   "MYH10 MUTATED" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"MYH10 WILD-TYPE" "MYH10 WILD-TYPE"   "MYH10 MUTATED"   "MYH10 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"MYH10 WILD-TYPE" "MYH10 WILD-TYPE" "MYH10 WILD-TYPE"   "MYH10 MUTATED" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
  "MYH10 MUTATED" "MYH10 WILD-TYPE" "MYH10 WILD-TYPE" "MYH10 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"MYH10 WILD-TYPE"   "MYH10 MUTATED" "MYH10 WILD-TYPE"   "MYH10 MUTATED" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"MYH10 WILD-TYPE" "MYH10 WILD-TYPE" "MYH10 WILD-TYPE" "MYH10 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"MYH10 WILD-TYPE" "MYH10 WILD-TYPE" "MYH10 WILD-TYPE" "MYH10 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"MYH10 WILD-TYPE" "MYH10 WILD-TYPE" "MYH10 WILD-TYPE" "MYH10 WILD-TYPE" 
     TCGA-US-A77J 
  "MYH10 MUTATED" 
[1] "hr=" "1.2"
D54V2, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  MYH10 MUTATED          0        0         3        17         0        0
  MYH10 WILD-TYPE        1        4         8        34         2        3
D54V3, multiclass
                 vv
clus              T1+T2 T3+T4
  MYH10 MUTATED       1    19
  MYH10 WILD-TYPE     5    47
D54V4, multiclass
       clus
vv      MYH10 MUTATED MYH10 WILD-TYPE
  T1+T2             1               5
  T3+T4            19              47
D54V5, binary
                 cls
clus               0  1
  MYH10 MUTATED    3 17
  MYH10 WILD-TYPE 14 37
[1] "tbl2"
                 cls
clus              [,1] [,2]
  MYH10 MUTATED      3   17
  MYH10 WILD-TYPE   14   37
   clus
vv  MYH10 MUTATED MYH10 WILD-TYPE
  0             3              14
  1            17              37
                 vv
clus              M0 M1 MX
  MYH10 MUTATED    9  0 11
  MYH10 WILD-TYPE 30  3 19
D54V6, multiclass
    clus
vv   MYH10 MUTATED MYH10 WILD-TYPE
  M0             9              30
  M1             0               3
  MX            11              19
D54V7, binary
                 cls
clus               0  1
  MYH10 MUTATED   14  6
  MYH10 WILD-TYPE 22 30
[1] "tbl2"
                 cls
clus              [,1] [,2]
  MYH10 MUTATED     14    6
  MYH10 WILD-TYPE   22   30
        clus
vv       MYH10 MUTATED MYH10 WILD-TYPE
  FEMALE            14              22
  MALE               6              30
                 vv
clus              PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  MYH10 MUTATED                                    18
  MYH10 WILD-TYPE                                  47
                 vv
clus              PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  MYH10 MUTATED                                       2
  MYH10 WILD-TYPE                                     2
                 vv
clus              PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  MYH10 MUTATED                                                  0
  MYH10 WILD-TYPE                                                2
D54V8, multiclass
                                                  clus
vv                                                 MYH10 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                         18
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                        2
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA             0
                                                  clus
vv                                                 MYH10 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                           47
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                          2
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA               2
D54V9, continuous
D54V10, continuous
                 vv
clus              R0 R1 RX
  MYH10 MUTATED    8  9  1
  MYH10 WILD-TYPE 34 15  1
D54V11, multiclass
    clus
vv   MYH10 MUTATED MYH10 WILD-TYPE
  R0             8              34
  R1             9              15
  RX             1               1
D54V12, continuous

Clustering(55) Variable = WASF3 MUTATION ANALYSIS
D55V1, survival
                 sevent
clus2              0  1
  WASF3 MUTATED   10  5
  WASF3 WILD-TYPE 30 24
  WASF3 MUTATED WASF3 WILD-TYPE 
             15              54 
  WASF3 MUTATED WASF3 WILD-TYPE 
              5              24 
$`WASF3 MUTATED`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-A44H TCGA-H6-8124 TCGA-HZ-7919 TCGA-HZ-7923 
       10.98         9.70        19.27        12.89         0.66         0.26 
TCGA-HZ-7924 TCGA-HZ-8003 TCGA-HZ-8005 TCGA-IB-7645 TCGA-IB-7647 TCGA-IB-7890 
       12.13         0.69         3.95        49.38        21.90        19.66 
TCGA-IB-A5SP TCGA-OE-A75W TCGA-PZ-A5RE 
        9.86         3.62         8.12 

$`WASF3 WILD-TYPE`
TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-FB-A4P5 TCGA-FB-A4P6 TCGA-FB-A545 
       11.84         7.10         5.03         0.13        11.93        12.66 
TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR TCGA-FZ-5920 TCGA-FZ-5922 TCGA-FZ-5923 
        2.47         0.03         5.46         2.01        36.20        20.81 
TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-7922 TCGA-HZ-7925 
        7.66        13.02         7.89         0.92         0.13        11.87 
TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8636 
        0.26         0.62         0.79         0.92         0.53         0.16 
TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 
        2.99         0.76         0.95         6.38         1.51        11.41 
TCGA-IB-7646 TCGA-IB-7649 TCGA-IB-7651 TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7886 
        4.77        15.35        19.82        15.65        27.98         4.04 
TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-7897 
        3.62        43.79        15.81        16.04         3.85        15.98 
TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST 
        0.56        17.16        10.82         7.20        15.12         0.26 
TCGA-IB-A6UG TCGA-LB-A7SX TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
        1.35         4.18        13.68        16.80        14.14        18.67 

  WASF3 MUTATED WASF3 WILD-TYPE 
           0.26            0.03 
  WASF3 MUTATED WASF3 WILD-TYPE 
          49.38           43.79 
  WASF3 MUTATED WASF3 WILD-TYPE 
           9.86            6.74 
[1] "0.3 - 49.4 (9.9)" "0.0 - 43.8 (6.7)"
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
  "WASF3 MUTATED"   "WASF3 MUTATED" "WASF3 WILD-TYPE" "WASF3 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"WASF3 WILD-TYPE"   "WASF3 MUTATED" "WASF3 WILD-TYPE" "WASF3 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"WASF3 WILD-TYPE" "WASF3 WILD-TYPE" "WASF3 WILD-TYPE" "WASF3 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"WASF3 WILD-TYPE" "WASF3 WILD-TYPE" "WASF3 WILD-TYPE"   "WASF3 MUTATED" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"WASF3 WILD-TYPE" "WASF3 WILD-TYPE" "WASF3 WILD-TYPE" "WASF3 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
  "WASF3 MUTATED" "WASF3 WILD-TYPE"   "WASF3 MUTATED"   "WASF3 MUTATED" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"WASF3 WILD-TYPE" "WASF3 WILD-TYPE" "WASF3 WILD-TYPE" "WASF3 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
  "WASF3 MUTATED"   "WASF3 MUTATED" "WASF3 WILD-TYPE" "WASF3 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"WASF3 WILD-TYPE" "WASF3 WILD-TYPE" "WASF3 WILD-TYPE" "WASF3 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"WASF3 WILD-TYPE" "WASF3 WILD-TYPE" "WASF3 WILD-TYPE"   "WASF3 MUTATED" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"WASF3 WILD-TYPE"   "WASF3 MUTATED" "WASF3 WILD-TYPE" "WASF3 WILD-TYPE" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"WASF3 WILD-TYPE" "WASF3 WILD-TYPE" "WASF3 WILD-TYPE" "WASF3 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"WASF3 WILD-TYPE" "WASF3 WILD-TYPE"   "WASF3 MUTATED" "WASF3 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"WASF3 WILD-TYPE" "WASF3 WILD-TYPE" "WASF3 WILD-TYPE" "WASF3 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"WASF3 WILD-TYPE"   "WASF3 MUTATED" "WASF3 WILD-TYPE" "WASF3 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"WASF3 WILD-TYPE" "WASF3 WILD-TYPE" "WASF3 WILD-TYPE"   "WASF3 MUTATED" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
  "WASF3 MUTATED" "WASF3 WILD-TYPE" "WASF3 WILD-TYPE" "WASF3 WILD-TYPE" 
     TCGA-US-A77J 
"WASF3 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
  "WASF3 MUTATED"   "WASF3 MUTATED" "WASF3 WILD-TYPE" "WASF3 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"WASF3 WILD-TYPE"   "WASF3 MUTATED" "WASF3 WILD-TYPE" "WASF3 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"WASF3 WILD-TYPE" "WASF3 WILD-TYPE" "WASF3 WILD-TYPE" "WASF3 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"WASF3 WILD-TYPE" "WASF3 WILD-TYPE" "WASF3 WILD-TYPE"   "WASF3 MUTATED" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"WASF3 WILD-TYPE" "WASF3 WILD-TYPE" "WASF3 WILD-TYPE" "WASF3 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
  "WASF3 MUTATED" "WASF3 WILD-TYPE"   "WASF3 MUTATED"   "WASF3 MUTATED" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"WASF3 WILD-TYPE" "WASF3 WILD-TYPE" "WASF3 WILD-TYPE" "WASF3 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
  "WASF3 MUTATED"   "WASF3 MUTATED" "WASF3 WILD-TYPE" "WASF3 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"WASF3 WILD-TYPE" "WASF3 WILD-TYPE" "WASF3 WILD-TYPE" "WASF3 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"WASF3 WILD-TYPE" "WASF3 WILD-TYPE" "WASF3 WILD-TYPE"   "WASF3 MUTATED" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"WASF3 WILD-TYPE"   "WASF3 MUTATED" "WASF3 WILD-TYPE" "WASF3 WILD-TYPE" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"WASF3 WILD-TYPE" "WASF3 WILD-TYPE" "WASF3 WILD-TYPE" "WASF3 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"WASF3 WILD-TYPE" "WASF3 WILD-TYPE"   "WASF3 MUTATED" "WASF3 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"WASF3 WILD-TYPE" "WASF3 WILD-TYPE" "WASF3 WILD-TYPE" "WASF3 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"WASF3 WILD-TYPE"   "WASF3 MUTATED" "WASF3 WILD-TYPE" "WASF3 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"WASF3 WILD-TYPE" "WASF3 WILD-TYPE" "WASF3 WILD-TYPE"   "WASF3 MUTATED" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
  "WASF3 MUTATED" "WASF3 WILD-TYPE" "WASF3 WILD-TYPE" "WASF3 WILD-TYPE" 
     TCGA-US-A77J 
"WASF3 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
  "WASF3 MUTATED"   "WASF3 MUTATED" "WASF3 WILD-TYPE" "WASF3 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"WASF3 WILD-TYPE"   "WASF3 MUTATED" "WASF3 WILD-TYPE" "WASF3 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"WASF3 WILD-TYPE" "WASF3 WILD-TYPE" "WASF3 WILD-TYPE" "WASF3 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"WASF3 WILD-TYPE" "WASF3 WILD-TYPE" "WASF3 WILD-TYPE"   "WASF3 MUTATED" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"WASF3 WILD-TYPE" "WASF3 WILD-TYPE" "WASF3 WILD-TYPE" "WASF3 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
  "WASF3 MUTATED" "WASF3 WILD-TYPE"   "WASF3 MUTATED"   "WASF3 MUTATED" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"WASF3 WILD-TYPE" "WASF3 WILD-TYPE" "WASF3 WILD-TYPE" "WASF3 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
  "WASF3 MUTATED"   "WASF3 MUTATED" "WASF3 WILD-TYPE" "WASF3 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"WASF3 WILD-TYPE" "WASF3 WILD-TYPE" "WASF3 WILD-TYPE" "WASF3 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"WASF3 WILD-TYPE" "WASF3 WILD-TYPE" "WASF3 WILD-TYPE"   "WASF3 MUTATED" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"WASF3 WILD-TYPE"   "WASF3 MUTATED" "WASF3 WILD-TYPE" "WASF3 WILD-TYPE" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"WASF3 WILD-TYPE" "WASF3 WILD-TYPE" "WASF3 WILD-TYPE" "WASF3 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"WASF3 WILD-TYPE" "WASF3 WILD-TYPE"   "WASF3 MUTATED" "WASF3 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"WASF3 WILD-TYPE" "WASF3 WILD-TYPE" "WASF3 WILD-TYPE" "WASF3 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"WASF3 WILD-TYPE"   "WASF3 MUTATED" "WASF3 WILD-TYPE" "WASF3 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"WASF3 WILD-TYPE" "WASF3 WILD-TYPE" "WASF3 WILD-TYPE"   "WASF3 MUTATED" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
  "WASF3 MUTATED" "WASF3 WILD-TYPE" "WASF3 WILD-TYPE" "WASF3 WILD-TYPE" 
     TCGA-US-A77J 
"WASF3 WILD-TYPE" 
[1] "hr=" "2.4"
D55V2, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  WASF3 MUTATED          0        1         5        10         0        0
  WASF3 WILD-TYPE        1        3         6        41         2        3
D55V3, multiclass
                 vv
clus              T1+T2 T3+T4
  WASF3 MUTATED       1    15
  WASF3 WILD-TYPE     5    51
D55V4, multiclass
       clus
vv      WASF3 MUTATED WASF3 WILD-TYPE
  T1+T2             1               5
  T3+T4            15              51
D55V5, binary
                 cls
clus               0  1
  WASF3 MUTATED    6 10
  WASF3 WILD-TYPE 11 44
[1] "tbl2"
                 cls
clus              [,1] [,2]
  WASF3 MUTATED      6   10
  WASF3 WILD-TYPE   11   44
   clus
vv  WASF3 MUTATED WASF3 WILD-TYPE
  0             6              11
  1            10              44
                 vv
clus              M0 M1 MX
  WASF3 MUTATED   10  0  6
  WASF3 WILD-TYPE 29  3 24
D55V6, multiclass
    clus
vv   WASF3 MUTATED WASF3 WILD-TYPE
  M0            10              29
  M1             0               3
  MX             6              24
D55V7, binary
                 cls
clus               0  1
  WASF3 MUTATED    8  8
  WASF3 WILD-TYPE 28 28
[1] "tbl2"
                 cls
clus              [,1] [,2]
  WASF3 MUTATED      8    8
  WASF3 WILD-TYPE   28   28
        clus
vv       WASF3 MUTATED WASF3 WILD-TYPE
  FEMALE             8              28
  MALE               8              28
                 vv
clus              PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  WASF3 MUTATED                                    15
  WASF3 WILD-TYPE                                  50
                 vv
clus              PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  WASF3 MUTATED                                       0
  WASF3 WILD-TYPE                                     4
                 vv
clus              PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  WASF3 MUTATED                                                  0
  WASF3 WILD-TYPE                                                2
D55V8, multiclass
                                                  clus
vv                                                 WASF3 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                         15
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                        0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA             0
                                                  clus
vv                                                 WASF3 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                           50
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                          4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA               2
D55V9, continuous
D55V10, continuous
[1] "Remove cluster labels:" "WASF3 MUTATED"         
clus
  WASF3 MUTATED WASF3 WILD-TYPE 
              2              17 
     TCGA-FB-A4P5      TCGA-FB-A4P6      TCGA-FB-A5VM      TCGA-FB-A78T 
"WASF3 WILD-TYPE" "WASF3 WILD-TYPE" "WASF3 WILD-TYPE" "WASF3 WILD-TYPE" 
     TCGA-FB-A7DR      TCGA-H8-A6C1      TCGA-IB-7644      TCGA-IB-7649 
"WASF3 WILD-TYPE" "WASF3 WILD-TYPE" "WASF3 WILD-TYPE" "WASF3 WILD-TYPE" 
     TCGA-IB-7651      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7891 
"WASF3 WILD-TYPE" "WASF3 WILD-TYPE" "WASF3 WILD-TYPE" "WASF3 WILD-TYPE" 
     TCGA-IB-8126      TCGA-IB-8127      TCGA-IB-A5SS      TCGA-IB-A6UG 
"WASF3 WILD-TYPE" "WASF3 WILD-TYPE" "WASF3 WILD-TYPE" "WASF3 WILD-TYPE" 
     TCGA-LB-A7SX 
"WASF3 WILD-TYPE" 
                 vv
clus              R0 R1 RX
  WASF3 MUTATED   11  4  0
  WASF3 WILD-TYPE 31 20  2
D55V11, multiclass
    clus
vv   WASF3 MUTATED WASF3 WILD-TYPE
  R0            11              31
  R1             4              20
  RX             0               2
D55V12, continuous

Clustering(56) Variable = GPR25 MUTATION ANALYSIS
D56V1, survival
                 sevent
clus2              0  1
  GPR25 MUTATED    8  3
  GPR25 WILD-TYPE 32 26
  GPR25 MUTATED GPR25 WILD-TYPE 
             11              58 
  GPR25 MUTATED GPR25 WILD-TYPE 
              3              26 
$`GPR25 MUTATED`
TCGA-F2-6880 TCGA-F2-7276 TCGA-FB-A545 TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 
        9.70         7.10        12.66        12.89         7.66        13.02 
TCGA-HZ-7919 TCGA-HZ-7923 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-IB-7651 
        0.66         0.26         0.79         0.69        19.82 

$`GPR25 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-7273 TCGA-F2-A44G TCGA-F2-A44H TCGA-FB-A4P5 TCGA-FB-A4P6 
       10.98        11.84         5.03        19.27         0.13        11.93 
TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR TCGA-FZ-5920 TCGA-FZ-5922 TCGA-FZ-5923 
        2.47         0.03         5.46         2.01        36.20        20.81 
TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-7922 TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 
        7.89         0.92         0.13        12.13        11.87         0.26 
TCGA-HZ-8001 TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8636 TCGA-HZ-8638 
        0.62         3.95         0.92         0.53         0.16         2.99 
TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7645 
        0.76         0.95         6.38         1.51        11.41        49.38 
TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7886 
        4.77        21.90        15.35        15.65        27.98         4.04 
TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-7893 
        3.62        43.79        15.81        19.66        16.04         3.85 
TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ 
       15.98         0.56        17.16        10.82         9.86         7.20 
TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W TCGA-PZ-A5RE 
       15.12         0.26         1.35         4.18         3.62         8.12 
TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
       13.68        16.80        14.14        18.67 

  GPR25 MUTATED GPR25 WILD-TYPE 
           0.26            0.03 
  GPR25 MUTATED GPR25 WILD-TYPE 
          19.82           49.38 
  GPR25 MUTATED GPR25 WILD-TYPE 
          7.660           7.545 
[1] "0.3 - 19.8 (7.7)" "0.0 - 49.4 (7.5)"
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"GPR25 WILD-TYPE"   "GPR25 MUTATED" "GPR25 WILD-TYPE"   "GPR25 MUTATED" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"GPR25 WILD-TYPE" "GPR25 WILD-TYPE" "GPR25 WILD-TYPE" "GPR25 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
  "GPR25 MUTATED" "GPR25 WILD-TYPE" "GPR25 WILD-TYPE" "GPR25 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"GPR25 WILD-TYPE" "GPR25 WILD-TYPE" "GPR25 WILD-TYPE"   "GPR25 MUTATED" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
  "GPR25 MUTATED"   "GPR25 MUTATED" "GPR25 WILD-TYPE" "GPR25 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
  "GPR25 MUTATED" "GPR25 WILD-TYPE"   "GPR25 MUTATED" "GPR25 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"GPR25 WILD-TYPE" "GPR25 WILD-TYPE" "GPR25 WILD-TYPE"   "GPR25 MUTATED" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
  "GPR25 MUTATED" "GPR25 WILD-TYPE" "GPR25 WILD-TYPE" "GPR25 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"GPR25 WILD-TYPE" "GPR25 WILD-TYPE" "GPR25 WILD-TYPE" "GPR25 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"GPR25 WILD-TYPE" "GPR25 WILD-TYPE" "GPR25 WILD-TYPE" "GPR25 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"GPR25 WILD-TYPE" "GPR25 WILD-TYPE" "GPR25 WILD-TYPE"   "GPR25 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"GPR25 WILD-TYPE" "GPR25 WILD-TYPE" "GPR25 WILD-TYPE" "GPR25 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"GPR25 WILD-TYPE" "GPR25 WILD-TYPE" "GPR25 WILD-TYPE" "GPR25 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"GPR25 WILD-TYPE" "GPR25 WILD-TYPE" "GPR25 WILD-TYPE" "GPR25 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"GPR25 WILD-TYPE" "GPR25 WILD-TYPE" "GPR25 WILD-TYPE" "GPR25 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"GPR25 WILD-TYPE" "GPR25 WILD-TYPE" "GPR25 WILD-TYPE" "GPR25 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"GPR25 WILD-TYPE" "GPR25 WILD-TYPE" "GPR25 WILD-TYPE" "GPR25 WILD-TYPE" 
     TCGA-US-A77J 
"GPR25 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"GPR25 WILD-TYPE"   "GPR25 MUTATED" "GPR25 WILD-TYPE"   "GPR25 MUTATED" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"GPR25 WILD-TYPE" "GPR25 WILD-TYPE" "GPR25 WILD-TYPE" "GPR25 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
  "GPR25 MUTATED" "GPR25 WILD-TYPE" "GPR25 WILD-TYPE" "GPR25 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"GPR25 WILD-TYPE" "GPR25 WILD-TYPE" "GPR25 WILD-TYPE"   "GPR25 MUTATED" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
  "GPR25 MUTATED"   "GPR25 MUTATED" "GPR25 WILD-TYPE" "GPR25 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
  "GPR25 MUTATED" "GPR25 WILD-TYPE"   "GPR25 MUTATED" "GPR25 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"GPR25 WILD-TYPE" "GPR25 WILD-TYPE" "GPR25 WILD-TYPE"   "GPR25 MUTATED" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
  "GPR25 MUTATED" "GPR25 WILD-TYPE" "GPR25 WILD-TYPE" "GPR25 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"GPR25 WILD-TYPE" "GPR25 WILD-TYPE" "GPR25 WILD-TYPE" "GPR25 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"GPR25 WILD-TYPE" "GPR25 WILD-TYPE" "GPR25 WILD-TYPE" "GPR25 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"GPR25 WILD-TYPE" "GPR25 WILD-TYPE" "GPR25 WILD-TYPE"   "GPR25 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"GPR25 WILD-TYPE" "GPR25 WILD-TYPE" "GPR25 WILD-TYPE" "GPR25 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"GPR25 WILD-TYPE" "GPR25 WILD-TYPE" "GPR25 WILD-TYPE" "GPR25 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"GPR25 WILD-TYPE" "GPR25 WILD-TYPE" "GPR25 WILD-TYPE" "GPR25 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"GPR25 WILD-TYPE" "GPR25 WILD-TYPE" "GPR25 WILD-TYPE" "GPR25 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"GPR25 WILD-TYPE" "GPR25 WILD-TYPE" "GPR25 WILD-TYPE" "GPR25 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"GPR25 WILD-TYPE" "GPR25 WILD-TYPE" "GPR25 WILD-TYPE" "GPR25 WILD-TYPE" 
     TCGA-US-A77J 
"GPR25 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"GPR25 WILD-TYPE"   "GPR25 MUTATED" "GPR25 WILD-TYPE"   "GPR25 MUTATED" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"GPR25 WILD-TYPE" "GPR25 WILD-TYPE" "GPR25 WILD-TYPE" "GPR25 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
  "GPR25 MUTATED" "GPR25 WILD-TYPE" "GPR25 WILD-TYPE" "GPR25 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"GPR25 WILD-TYPE" "GPR25 WILD-TYPE" "GPR25 WILD-TYPE"   "GPR25 MUTATED" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
  "GPR25 MUTATED"   "GPR25 MUTATED" "GPR25 WILD-TYPE" "GPR25 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
  "GPR25 MUTATED" "GPR25 WILD-TYPE"   "GPR25 MUTATED" "GPR25 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"GPR25 WILD-TYPE" "GPR25 WILD-TYPE" "GPR25 WILD-TYPE"   "GPR25 MUTATED" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
  "GPR25 MUTATED" "GPR25 WILD-TYPE" "GPR25 WILD-TYPE" "GPR25 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"GPR25 WILD-TYPE" "GPR25 WILD-TYPE" "GPR25 WILD-TYPE" "GPR25 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"GPR25 WILD-TYPE" "GPR25 WILD-TYPE" "GPR25 WILD-TYPE" "GPR25 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"GPR25 WILD-TYPE" "GPR25 WILD-TYPE" "GPR25 WILD-TYPE"   "GPR25 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"GPR25 WILD-TYPE" "GPR25 WILD-TYPE" "GPR25 WILD-TYPE" "GPR25 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"GPR25 WILD-TYPE" "GPR25 WILD-TYPE" "GPR25 WILD-TYPE" "GPR25 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"GPR25 WILD-TYPE" "GPR25 WILD-TYPE" "GPR25 WILD-TYPE" "GPR25 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"GPR25 WILD-TYPE" "GPR25 WILD-TYPE" "GPR25 WILD-TYPE" "GPR25 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"GPR25 WILD-TYPE" "GPR25 WILD-TYPE" "GPR25 WILD-TYPE" "GPR25 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"GPR25 WILD-TYPE" "GPR25 WILD-TYPE" "GPR25 WILD-TYPE" "GPR25 WILD-TYPE" 
     TCGA-US-A77J 
"GPR25 WILD-TYPE" 
[1] "hr=" "1"  
D56V2, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  GPR25 MUTATED          0        0         2         9         0        0
  GPR25 WILD-TYPE        1        4         9        42         2        3
D56V3, multiclass
                 vv
clus              T1+T2 T3+T4
  GPR25 MUTATED       0    11
  GPR25 WILD-TYPE     6    55
D56V4, multiclass
       clus
vv      GPR25 MUTATED GPR25 WILD-TYPE
  T1+T2             0               6
  T3+T4            11              55
D56V5, binary
                 cls
clus               0  1
  GPR25 MUTATED    2  9
  GPR25 WILD-TYPE 15 45
[1] "tbl2"
                 cls
clus              [,1] [,2]
  GPR25 MUTATED      2    9
  GPR25 WILD-TYPE   15   45
   clus
vv  GPR25 MUTATED GPR25 WILD-TYPE
  0             2              15
  1             9              45
                 vv
clus              M0 M1 MX
  GPR25 MUTATED    6  0  5
  GPR25 WILD-TYPE 33  3 25
D56V6, multiclass
    clus
vv   GPR25 MUTATED GPR25 WILD-TYPE
  M0             6              33
  M1             0               3
  MX             5              25
D56V7, binary
                 cls
clus               0  1
  GPR25 MUTATED    6  5
  GPR25 WILD-TYPE 30 31
[1] "tbl2"
                 cls
clus              [,1] [,2]
  GPR25 MUTATED      6    5
  GPR25 WILD-TYPE   30   31
        clus
vv       GPR25 MUTATED GPR25 WILD-TYPE
  FEMALE             6              30
  MALE               5              31
                 vv
clus              PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  GPR25 MUTATED                                     9
  GPR25 WILD-TYPE                                  56
                 vv
clus              PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  GPR25 MUTATED                                       2
  GPR25 WILD-TYPE                                     2
                 vv
clus              PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  GPR25 MUTATED                                                  0
  GPR25 WILD-TYPE                                                2
D56V8, multiclass
                                                  clus
vv                                                 GPR25 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                          9
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                        2
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA             0
                                                  clus
vv                                                 GPR25 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                           56
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                          2
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA               2
D56V9, continuous
D56V10, continuous
                 vv
clus              R0 R1 RX
  GPR25 MUTATED    8  1  0
  GPR25 WILD-TYPE 34 23  2
D56V11, multiclass
    clus
vv   GPR25 MUTATED GPR25 WILD-TYPE
  R0             8              34
  R1             1              23
  RX             0               2
D56V12, continuous

Clustering(57) Variable = NFAT5 MUTATION ANALYSIS
D57V1, survival
                 sevent
clus2              0  1
  NFAT5 MUTATED   10  7
  NFAT5 WILD-TYPE 30 22
  NFAT5 MUTATED NFAT5 WILD-TYPE 
             17              52 
  NFAT5 MUTATED NFAT5 WILD-TYPE 
              7              22 
$`NFAT5 MUTATED`
TCGA-F2-6880 TCGA-F2-7276 TCGA-F2-A44G TCGA-H6-8124 TCGA-HZ-7923 TCGA-HZ-8001 
        9.70         7.10         5.03        12.89         0.26         0.62 
TCGA-HZ-8003 TCGA-HZ-8315 TCGA-HZ-8638 TCGA-HZ-A49G TCGA-IB-7649 TCGA-IB-7651 
        0.69         0.92         2.99         0.76        15.35        19.82 
TCGA-IB-7885 TCGA-IB-7888 TCGA-IB-7890 TCGA-IB-7893 TCGA-PZ-A5RE 
       27.98        43.79        19.66         3.85         8.12 

$`NFAT5 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-7273 TCGA-F2-A44H TCGA-FB-A4P5 TCGA-FB-A4P6 TCGA-FB-A545 
       10.98        11.84        19.27         0.13        11.93        12.66 
TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR TCGA-FZ-5920 TCGA-FZ-5922 TCGA-FZ-5923 
        2.47         0.03         5.46         2.01        36.20        20.81 
TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7922 
        7.66        13.02         7.89         0.92         0.66         0.13 
TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8002 TCGA-HZ-8005 TCGA-HZ-8317 
       12.13        11.87         0.26         0.79         3.95         0.53 
TCGA-HZ-8636 TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7645 
        0.16         0.95         6.38         1.51        11.41        49.38 
TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7652 TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7889 
        4.77        21.90        15.65         4.04         3.62        15.81 
TCGA-IB-7891 TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP 
       16.04        15.98         0.56        17.16        10.82         9.86 
TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W 
        7.20        15.12         0.26         1.35         4.18         3.62 
TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
       13.68        16.80        14.14        18.67 

  NFAT5 MUTATED NFAT5 WILD-TYPE 
           0.26            0.03 
  NFAT5 MUTATED NFAT5 WILD-TYPE 
          43.79           49.38 
  NFAT5 MUTATED NFAT5 WILD-TYPE 
          7.100           7.775 
[1] "0.3 - 43.8 (7.1)" "0.0 - 49.4 (7.8)"
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"NFAT5 WILD-TYPE"   "NFAT5 MUTATED" "NFAT5 WILD-TYPE"   "NFAT5 MUTATED" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
  "NFAT5 MUTATED" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE"   "NFAT5 MUTATED" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE"   "NFAT5 MUTATED" "NFAT5 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE"   "NFAT5 MUTATED" "NFAT5 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
  "NFAT5 MUTATED" "NFAT5 WILD-TYPE"   "NFAT5 MUTATED" "NFAT5 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"NFAT5 WILD-TYPE"   "NFAT5 MUTATED"   "NFAT5 MUTATED" "NFAT5 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE"   "NFAT5 MUTATED"   "NFAT5 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"NFAT5 WILD-TYPE"   "NFAT5 MUTATED" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
  "NFAT5 MUTATED" "NFAT5 WILD-TYPE"   "NFAT5 MUTATED" "NFAT5 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
  "NFAT5 MUTATED" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
  "NFAT5 MUTATED" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" 
     TCGA-US-A77J 
"NFAT5 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"NFAT5 WILD-TYPE"   "NFAT5 MUTATED" "NFAT5 WILD-TYPE"   "NFAT5 MUTATED" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
  "NFAT5 MUTATED" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE"   "NFAT5 MUTATED" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE"   "NFAT5 MUTATED" "NFAT5 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE"   "NFAT5 MUTATED" "NFAT5 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
  "NFAT5 MUTATED" "NFAT5 WILD-TYPE"   "NFAT5 MUTATED" "NFAT5 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"NFAT5 WILD-TYPE"   "NFAT5 MUTATED"   "NFAT5 MUTATED" "NFAT5 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE"   "NFAT5 MUTATED"   "NFAT5 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"NFAT5 WILD-TYPE"   "NFAT5 MUTATED" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
  "NFAT5 MUTATED" "NFAT5 WILD-TYPE"   "NFAT5 MUTATED" "NFAT5 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
  "NFAT5 MUTATED" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
  "NFAT5 MUTATED" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" 
     TCGA-US-A77J 
"NFAT5 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"NFAT5 WILD-TYPE"   "NFAT5 MUTATED" "NFAT5 WILD-TYPE"   "NFAT5 MUTATED" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
  "NFAT5 MUTATED" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE"   "NFAT5 MUTATED" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE"   "NFAT5 MUTATED" "NFAT5 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE"   "NFAT5 MUTATED" "NFAT5 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
  "NFAT5 MUTATED" "NFAT5 WILD-TYPE"   "NFAT5 MUTATED" "NFAT5 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"NFAT5 WILD-TYPE"   "NFAT5 MUTATED"   "NFAT5 MUTATED" "NFAT5 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE"   "NFAT5 MUTATED"   "NFAT5 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"NFAT5 WILD-TYPE"   "NFAT5 MUTATED" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
  "NFAT5 MUTATED" "NFAT5 WILD-TYPE"   "NFAT5 MUTATED" "NFAT5 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
  "NFAT5 MUTATED" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
  "NFAT5 MUTATED" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" "NFAT5 WILD-TYPE" 
     TCGA-US-A77J 
"NFAT5 WILD-TYPE" 
[1] "hr=" "1.2"
D57V2, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  NFAT5 MUTATED          1        1         4        10         1        0
  NFAT5 WILD-TYPE        0        3         7        41         1        3
D57V3, multiclass
                 vv
clus              T1+T2 T3+T4
  NFAT5 MUTATED       3    14
  NFAT5 WILD-TYPE     3    52
D57V4, multiclass
       clus
vv      NFAT5 MUTATED NFAT5 WILD-TYPE
  T1+T2             3               3
  T3+T4            14              52
D57V5, binary
                 cls
clus               0  1
  NFAT5 MUTATED    7 10
  NFAT5 WILD-TYPE 10 44
[1] "tbl2"
                 cls
clus              [,1] [,2]
  NFAT5 MUTATED      7   10
  NFAT5 WILD-TYPE   10   44
   clus
vv  NFAT5 MUTATED NFAT5 WILD-TYPE
  0             7              10
  1            10              44
                 vv
clus              M0 M1 MX
  NFAT5 MUTATED   10  0  7
  NFAT5 WILD-TYPE 29  3 23
D57V6, multiclass
    clus
vv   NFAT5 MUTATED NFAT5 WILD-TYPE
  M0            10              29
  M1             0               3
  MX             7              23
D57V7, binary
                 cls
clus               0  1
  NFAT5 MUTATED   11  6
  NFAT5 WILD-TYPE 25 30
[1] "tbl2"
                 cls
clus              [,1] [,2]
  NFAT5 MUTATED     11    6
  NFAT5 WILD-TYPE   25   30
        clus
vv       NFAT5 MUTATED NFAT5 WILD-TYPE
  FEMALE            11              25
  MALE               6              30
                 vv
clus              PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  NFAT5 MUTATED                                    16
  NFAT5 WILD-TYPE                                  49
                 vv
clus              PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  NFAT5 MUTATED                                       0
  NFAT5 WILD-TYPE                                     4
                 vv
clus              PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  NFAT5 MUTATED                                                  1
  NFAT5 WILD-TYPE                                                1
D57V8, multiclass
                                                  clus
vv                                                 NFAT5 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                         16
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                        0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA             1
                                                  clus
vv                                                 NFAT5 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                           49
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                          4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA               1
D57V9, continuous
D57V10, continuous
                 vv
clus              R0 R1 RX
  NFAT5 MUTATED   12  4  0
  NFAT5 WILD-TYPE 30 20  2
D57V11, multiclass
    clus
vv   NFAT5 MUTATED NFAT5 WILD-TYPE
  R0            12              30
  R1             4              20
  RX             0               2
D57V12, continuous

Clustering(58) Variable = FGF10 MUTATION ANALYSIS
D58V1, survival
                 sevent
clus2              0  1
  FGF10 MUTATED    6  4
  FGF10 WILD-TYPE 34 25
  FGF10 MUTATED FGF10 WILD-TYPE 
             10              59 
  FGF10 MUTATED FGF10 WILD-TYPE 
              4              25 
$`FGF10 MUTATED`
TCGA-F2-6880 TCGA-FB-A4P6 TCGA-H6-8124 TCGA-HZ-8001 TCGA-HZ-8003 TCGA-HZ-A49G 
        9.70        11.93        12.89         0.62         0.69         0.76 
TCGA-IB-7645 TCGA-IB-7649 TCGA-IB-7889 TCGA-IB-7890 
       49.38        15.35        15.81        19.66 

$`FGF10 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H TCGA-FB-A4P5 
       10.98        11.84         7.10         5.03        19.27         0.13 
TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR TCGA-FZ-5920 TCGA-FZ-5922 
       12.66         2.47         0.03         5.46         2.01        36.20 
TCGA-FZ-5923 TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-7919 
       20.81         7.66        13.02         7.89         0.92         0.66 
TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8002 
        0.13         0.26        12.13        11.87         0.26         0.79 
TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49H 
        3.95         0.92         0.53         0.16         2.99         0.95 
TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7651 
        6.38         1.51        11.41         4.77        21.90        19.82 
TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7891 
       15.65        27.98         4.04         3.62        43.79        16.04 
TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP 
        3.85        15.98         0.56        17.16        10.82         9.86 
TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W 
        7.20        15.12         0.26         1.35         4.18         3.62 
TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
        8.12        13.68        16.80        14.14        18.67 

  FGF10 MUTATED FGF10 WILD-TYPE 
           0.62            0.03 
  FGF10 MUTATED FGF10 WILD-TYPE 
          49.38           43.79 
  FGF10 MUTATED FGF10 WILD-TYPE 
          12.41            7.10 
[1] "0.6 - 49.4 (12.4)" "0.0 - 43.8 (7.1)" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"FGF10 WILD-TYPE"   "FGF10 MUTATED" "FGF10 WILD-TYPE" "FGF10 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"FGF10 WILD-TYPE" "FGF10 WILD-TYPE" "FGF10 WILD-TYPE"   "FGF10 MUTATED" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"FGF10 WILD-TYPE" "FGF10 WILD-TYPE" "FGF10 WILD-TYPE" "FGF10 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"FGF10 WILD-TYPE" "FGF10 WILD-TYPE" "FGF10 WILD-TYPE"   "FGF10 MUTATED" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"FGF10 WILD-TYPE" "FGF10 WILD-TYPE" "FGF10 WILD-TYPE" "FGF10 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"FGF10 WILD-TYPE" "FGF10 WILD-TYPE" "FGF10 WILD-TYPE" "FGF10 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"FGF10 WILD-TYPE" "FGF10 WILD-TYPE"   "FGF10 MUTATED" "FGF10 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
  "FGF10 MUTATED" "FGF10 WILD-TYPE" "FGF10 WILD-TYPE" "FGF10 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"FGF10 WILD-TYPE" "FGF10 WILD-TYPE"   "FGF10 MUTATED" "FGF10 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"FGF10 WILD-TYPE" "FGF10 WILD-TYPE" "FGF10 WILD-TYPE"   "FGF10 MUTATED" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"FGF10 WILD-TYPE" "FGF10 WILD-TYPE"   "FGF10 MUTATED" "FGF10 WILD-TYPE" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"FGF10 WILD-TYPE" "FGF10 WILD-TYPE" "FGF10 WILD-TYPE" "FGF10 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"FGF10 WILD-TYPE"   "FGF10 MUTATED"   "FGF10 MUTATED" "FGF10 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"FGF10 WILD-TYPE" "FGF10 WILD-TYPE" "FGF10 WILD-TYPE" "FGF10 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"FGF10 WILD-TYPE" "FGF10 WILD-TYPE" "FGF10 WILD-TYPE" "FGF10 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"FGF10 WILD-TYPE" "FGF10 WILD-TYPE" "FGF10 WILD-TYPE" "FGF10 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"FGF10 WILD-TYPE" "FGF10 WILD-TYPE" "FGF10 WILD-TYPE" "FGF10 WILD-TYPE" 
     TCGA-US-A77J 
"FGF10 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"FGF10 WILD-TYPE"   "FGF10 MUTATED" "FGF10 WILD-TYPE" "FGF10 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"FGF10 WILD-TYPE" "FGF10 WILD-TYPE" "FGF10 WILD-TYPE"   "FGF10 MUTATED" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"FGF10 WILD-TYPE" "FGF10 WILD-TYPE" "FGF10 WILD-TYPE" "FGF10 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"FGF10 WILD-TYPE" "FGF10 WILD-TYPE" "FGF10 WILD-TYPE"   "FGF10 MUTATED" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"FGF10 WILD-TYPE" "FGF10 WILD-TYPE" "FGF10 WILD-TYPE" "FGF10 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"FGF10 WILD-TYPE" "FGF10 WILD-TYPE" "FGF10 WILD-TYPE" "FGF10 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"FGF10 WILD-TYPE" "FGF10 WILD-TYPE"   "FGF10 MUTATED" "FGF10 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
  "FGF10 MUTATED" "FGF10 WILD-TYPE" "FGF10 WILD-TYPE" "FGF10 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"FGF10 WILD-TYPE" "FGF10 WILD-TYPE"   "FGF10 MUTATED" "FGF10 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"FGF10 WILD-TYPE" "FGF10 WILD-TYPE" "FGF10 WILD-TYPE"   "FGF10 MUTATED" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"FGF10 WILD-TYPE" "FGF10 WILD-TYPE"   "FGF10 MUTATED" "FGF10 WILD-TYPE" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"FGF10 WILD-TYPE" "FGF10 WILD-TYPE" "FGF10 WILD-TYPE" "FGF10 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"FGF10 WILD-TYPE"   "FGF10 MUTATED"   "FGF10 MUTATED" "FGF10 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"FGF10 WILD-TYPE" "FGF10 WILD-TYPE" "FGF10 WILD-TYPE" "FGF10 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"FGF10 WILD-TYPE" "FGF10 WILD-TYPE" "FGF10 WILD-TYPE" "FGF10 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"FGF10 WILD-TYPE" "FGF10 WILD-TYPE" "FGF10 WILD-TYPE" "FGF10 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"FGF10 WILD-TYPE" "FGF10 WILD-TYPE" "FGF10 WILD-TYPE" "FGF10 WILD-TYPE" 
     TCGA-US-A77J 
"FGF10 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"FGF10 WILD-TYPE"   "FGF10 MUTATED" "FGF10 WILD-TYPE" "FGF10 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"FGF10 WILD-TYPE" "FGF10 WILD-TYPE" "FGF10 WILD-TYPE"   "FGF10 MUTATED" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"FGF10 WILD-TYPE" "FGF10 WILD-TYPE" "FGF10 WILD-TYPE" "FGF10 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"FGF10 WILD-TYPE" "FGF10 WILD-TYPE" "FGF10 WILD-TYPE"   "FGF10 MUTATED" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"FGF10 WILD-TYPE" "FGF10 WILD-TYPE" "FGF10 WILD-TYPE" "FGF10 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"FGF10 WILD-TYPE" "FGF10 WILD-TYPE" "FGF10 WILD-TYPE" "FGF10 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"FGF10 WILD-TYPE" "FGF10 WILD-TYPE"   "FGF10 MUTATED" "FGF10 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
  "FGF10 MUTATED" "FGF10 WILD-TYPE" "FGF10 WILD-TYPE" "FGF10 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"FGF10 WILD-TYPE" "FGF10 WILD-TYPE"   "FGF10 MUTATED" "FGF10 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"FGF10 WILD-TYPE" "FGF10 WILD-TYPE" "FGF10 WILD-TYPE"   "FGF10 MUTATED" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"FGF10 WILD-TYPE" "FGF10 WILD-TYPE"   "FGF10 MUTATED" "FGF10 WILD-TYPE" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"FGF10 WILD-TYPE" "FGF10 WILD-TYPE" "FGF10 WILD-TYPE" "FGF10 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"FGF10 WILD-TYPE"   "FGF10 MUTATED"   "FGF10 MUTATED" "FGF10 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"FGF10 WILD-TYPE" "FGF10 WILD-TYPE" "FGF10 WILD-TYPE" "FGF10 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"FGF10 WILD-TYPE" "FGF10 WILD-TYPE" "FGF10 WILD-TYPE" "FGF10 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"FGF10 WILD-TYPE" "FGF10 WILD-TYPE" "FGF10 WILD-TYPE" "FGF10 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"FGF10 WILD-TYPE" "FGF10 WILD-TYPE" "FGF10 WILD-TYPE" "FGF10 WILD-TYPE" 
     TCGA-US-A77J 
"FGF10 WILD-TYPE" 
[1] "hr=" "2.1"
D58V2, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  FGF10 MUTATED          0        1         0         9         1        0
  FGF10 WILD-TYPE        1        3        11        42         1        3
D58V3, multiclass
                 vv
clus              T1+T2 T3+T4
  FGF10 MUTATED       2     9
  FGF10 WILD-TYPE     4    57
D58V4, multiclass
       clus
vv      FGF10 MUTATED FGF10 WILD-TYPE
  T1+T2             2               4
  T3+T4             9              57
D58V5, binary
                 cls
clus               0  1
  FGF10 MUTATED    2  9
  FGF10 WILD-TYPE 15 45
[1] "tbl2"
                 cls
clus              [,1] [,2]
  FGF10 MUTATED      2    9
  FGF10 WILD-TYPE   15   45
   clus
vv  FGF10 MUTATED FGF10 WILD-TYPE
  0             2              15
  1             9              45
                 vv
clus              M0 M1 MX
  FGF10 MUTATED    6  0  5
  FGF10 WILD-TYPE 33  3 25
D58V6, multiclass
    clus
vv   FGF10 MUTATED FGF10 WILD-TYPE
  M0             6              33
  M1             0               3
  MX             5              25
D58V7, binary
                 cls
clus               0  1
  FGF10 MUTATED    6  5
  FGF10 WILD-TYPE 30 31
[1] "tbl2"
                 cls
clus              [,1] [,2]
  FGF10 MUTATED      6    5
  FGF10 WILD-TYPE   30   31
        clus
vv       FGF10 MUTATED FGF10 WILD-TYPE
  FEMALE             6              30
  MALE               5              31
                 vv
clus              PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  FGF10 MUTATED                                    11
  FGF10 WILD-TYPE                                  54
                 vv
clus              PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  FGF10 MUTATED                                       0
  FGF10 WILD-TYPE                                     4
                 vv
clus              PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  FGF10 MUTATED                                                  0
  FGF10 WILD-TYPE                                                2
D58V8, multiclass
                                                  clus
vv                                                 FGF10 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                         11
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                        0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA             0
                                                  clus
vv                                                 FGF10 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                           54
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                          4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA               2
D58V9, continuous
D58V10, continuous
                 vv
clus              R0 R1 RX
  FGF10 MUTATED    7  3  0
  FGF10 WILD-TYPE 35 21  2
D58V11, multiclass
    clus
vv   FGF10 MUTATED FGF10 WILD-TYPE
  R0             7              35
  R1             3              21
  RX             0               2
D58V12, continuous

Clustering(59) Variable = C19ORF55 MUTATION ANALYSIS
D59V1, survival
                    sevent
clus2                 0  1
  C19ORF55 MUTATED    6  9
  C19ORF55 WILD-TYPE 34 20
  C19ORF55 MUTATED C19ORF55 WILD-TYPE 
                15                 54 
  C19ORF55 MUTATED C19ORF55 WILD-TYPE 
                 9                 20 
$`C19ORF55 MUTATED`
TCGA-FZ-5920 TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7922 TCGA-HZ-8005 TCGA-HZ-A4BK 
        2.01         7.66        13.02         0.13         3.95         1.51 
TCGA-IB-7647 TCGA-IB-7651 TCGA-IB-7887 TCGA-IB-7889 TCGA-IB-8127 TCGA-IB-A5SQ 
       21.90        19.82         3.62        15.81        17.16         7.20 
TCGA-LB-A7SX TCGA-PZ-A5RE TCGA-US-A779 
        4.18         8.12        16.80 

$`C19ORF55 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P5 TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR 
        0.13        11.93        12.66         2.47         0.03         5.46 
TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-7919 
       36.20        20.81        12.89         7.89         0.92         0.66 
TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 
        0.26        12.13        11.87         0.26         0.62         0.79 
TCGA-HZ-8003 TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G 
        0.69         0.92         0.53         0.16         2.99         0.76 
TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7649 
        0.95         6.38        11.41        49.38         4.77        15.35 
TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7888 TCGA-IB-7890 TCGA-IB-7891 
       15.65        27.98         4.04        43.79        19.66        16.04 
TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SS 
        3.85        15.98         0.56        10.82         9.86        15.12 
TCGA-IB-A5ST TCGA-IB-A6UG TCGA-OE-A75W TCGA-Q3-A5QY TCGA-US-A77E TCGA-US-A77J 
        0.26         1.35         3.62        13.68        14.14        18.67 

  C19ORF55 MUTATED C19ORF55 WILD-TYPE 
              0.13               0.03 
  C19ORF55 MUTATED C19ORF55 WILD-TYPE 
             21.90              49.38 
  C19ORF55 MUTATED C19ORF55 WILD-TYPE 
             7.660              7.495 
[1] "0.1 - 21.9 (7.7)" "0.0 - 49.4 (7.5)"
        TCGA-F2-6879         TCGA-F2-6880         TCGA-F2-7273 
"C19ORF55 WILD-TYPE" "C19ORF55 WILD-TYPE" "C19ORF55 WILD-TYPE" 
        TCGA-F2-7276         TCGA-F2-A44G         TCGA-F2-A44H 
"C19ORF55 WILD-TYPE" "C19ORF55 WILD-TYPE" "C19ORF55 WILD-TYPE" 
        TCGA-FB-A4P5         TCGA-FB-A4P6         TCGA-FB-A545 
"C19ORF55 WILD-TYPE" "C19ORF55 WILD-TYPE" "C19ORF55 WILD-TYPE" 
        TCGA-FB-A5VM         TCGA-FB-A78T         TCGA-FB-A7DR 
"C19ORF55 WILD-TYPE" "C19ORF55 WILD-TYPE" "C19ORF55 WILD-TYPE" 
        TCGA-FZ-5920         TCGA-FZ-5922         TCGA-FZ-5923 
  "C19ORF55 MUTATED" "C19ORF55 WILD-TYPE" "C19ORF55 WILD-TYPE" 
        TCGA-H6-8124         TCGA-H6-A45N         TCGA-H8-A6C1 
"C19ORF55 WILD-TYPE"   "C19ORF55 MUTATED"   "C19ORF55 MUTATED" 
        TCGA-HZ-7289         TCGA-HZ-7918         TCGA-HZ-7919 
"C19ORF55 WILD-TYPE" "C19ORF55 WILD-TYPE" "C19ORF55 WILD-TYPE" 
        TCGA-HZ-7922         TCGA-HZ-7923         TCGA-HZ-7924 
  "C19ORF55 MUTATED" "C19ORF55 WILD-TYPE" "C19ORF55 WILD-TYPE" 
        TCGA-HZ-7925         TCGA-HZ-7926         TCGA-HZ-8001 
"C19ORF55 WILD-TYPE" "C19ORF55 WILD-TYPE" "C19ORF55 WILD-TYPE" 
        TCGA-HZ-8002         TCGA-HZ-8003         TCGA-HZ-8005 
"C19ORF55 WILD-TYPE" "C19ORF55 WILD-TYPE"   "C19ORF55 MUTATED" 
        TCGA-HZ-8315         TCGA-HZ-8317         TCGA-HZ-8636 
"C19ORF55 WILD-TYPE" "C19ORF55 WILD-TYPE" "C19ORF55 WILD-TYPE" 
        TCGA-HZ-8638         TCGA-HZ-A49G         TCGA-HZ-A49H 
"C19ORF55 WILD-TYPE" "C19ORF55 WILD-TYPE" "C19ORF55 WILD-TYPE" 
        TCGA-HZ-A4BH         TCGA-HZ-A4BK         TCGA-IB-7644 
"C19ORF55 WILD-TYPE"   "C19ORF55 MUTATED" "C19ORF55 WILD-TYPE" 
        TCGA-IB-7645         TCGA-IB-7646         TCGA-IB-7647 
"C19ORF55 WILD-TYPE" "C19ORF55 WILD-TYPE"   "C19ORF55 MUTATED" 
        TCGA-IB-7649         TCGA-IB-7651         TCGA-IB-7652 
"C19ORF55 WILD-TYPE"   "C19ORF55 MUTATED" "C19ORF55 WILD-TYPE" 
        TCGA-IB-7885         TCGA-IB-7886         TCGA-IB-7887 
"C19ORF55 WILD-TYPE" "C19ORF55 WILD-TYPE"   "C19ORF55 MUTATED" 
        TCGA-IB-7888         TCGA-IB-7889         TCGA-IB-7890 
"C19ORF55 WILD-TYPE"   "C19ORF55 MUTATED" "C19ORF55 WILD-TYPE" 
        TCGA-IB-7891         TCGA-IB-7893         TCGA-IB-7897 
"C19ORF55 WILD-TYPE" "C19ORF55 WILD-TYPE" "C19ORF55 WILD-TYPE" 
        TCGA-IB-8126         TCGA-IB-8127         TCGA-IB-A5SO 
"C19ORF55 WILD-TYPE"   "C19ORF55 MUTATED" "C19ORF55 WILD-TYPE" 
        TCGA-IB-A5SP         TCGA-IB-A5SQ         TCGA-IB-A5SS 
"C19ORF55 WILD-TYPE"   "C19ORF55 MUTATED" "C19ORF55 WILD-TYPE" 
        TCGA-IB-A5ST         TCGA-IB-A6UG         TCGA-LB-A7SX 
"C19ORF55 WILD-TYPE" "C19ORF55 WILD-TYPE"   "C19ORF55 MUTATED" 
        TCGA-OE-A75W         TCGA-PZ-A5RE         TCGA-Q3-A5QY 
"C19ORF55 WILD-TYPE"   "C19ORF55 MUTATED" "C19ORF55 WILD-TYPE" 
        TCGA-US-A779         TCGA-US-A77E         TCGA-US-A77J 
  "C19ORF55 MUTATED" "C19ORF55 WILD-TYPE" "C19ORF55 WILD-TYPE" 
        TCGA-F2-6879         TCGA-F2-6880         TCGA-F2-7273 
"C19ORF55 WILD-TYPE" "C19ORF55 WILD-TYPE" "C19ORF55 WILD-TYPE" 
        TCGA-F2-7276         TCGA-F2-A44G         TCGA-F2-A44H 
"C19ORF55 WILD-TYPE" "C19ORF55 WILD-TYPE" "C19ORF55 WILD-TYPE" 
        TCGA-FB-A4P5         TCGA-FB-A4P6         TCGA-FB-A545 
"C19ORF55 WILD-TYPE" "C19ORF55 WILD-TYPE" "C19ORF55 WILD-TYPE" 
        TCGA-FB-A5VM         TCGA-FB-A78T         TCGA-FB-A7DR 
"C19ORF55 WILD-TYPE" "C19ORF55 WILD-TYPE" "C19ORF55 WILD-TYPE" 
        TCGA-FZ-5920         TCGA-FZ-5922         TCGA-FZ-5923 
  "C19ORF55 MUTATED" "C19ORF55 WILD-TYPE" "C19ORF55 WILD-TYPE" 
        TCGA-H6-8124         TCGA-H6-A45N         TCGA-H8-A6C1 
"C19ORF55 WILD-TYPE"   "C19ORF55 MUTATED"   "C19ORF55 MUTATED" 
        TCGA-HZ-7289         TCGA-HZ-7918         TCGA-HZ-7919 
"C19ORF55 WILD-TYPE" "C19ORF55 WILD-TYPE" "C19ORF55 WILD-TYPE" 
        TCGA-HZ-7922         TCGA-HZ-7923         TCGA-HZ-7924 
  "C19ORF55 MUTATED" "C19ORF55 WILD-TYPE" "C19ORF55 WILD-TYPE" 
        TCGA-HZ-7925         TCGA-HZ-7926         TCGA-HZ-8001 
"C19ORF55 WILD-TYPE" "C19ORF55 WILD-TYPE" "C19ORF55 WILD-TYPE" 
        TCGA-HZ-8002         TCGA-HZ-8003         TCGA-HZ-8005 
"C19ORF55 WILD-TYPE" "C19ORF55 WILD-TYPE"   "C19ORF55 MUTATED" 
        TCGA-HZ-8315         TCGA-HZ-8317         TCGA-HZ-8636 
"C19ORF55 WILD-TYPE" "C19ORF55 WILD-TYPE" "C19ORF55 WILD-TYPE" 
        TCGA-HZ-8638         TCGA-HZ-A49G         TCGA-HZ-A49H 
"C19ORF55 WILD-TYPE" "C19ORF55 WILD-TYPE" "C19ORF55 WILD-TYPE" 
        TCGA-HZ-A4BH         TCGA-HZ-A4BK         TCGA-IB-7644 
"C19ORF55 WILD-TYPE"   "C19ORF55 MUTATED" "C19ORF55 WILD-TYPE" 
        TCGA-IB-7645         TCGA-IB-7646         TCGA-IB-7647 
"C19ORF55 WILD-TYPE" "C19ORF55 WILD-TYPE"   "C19ORF55 MUTATED" 
        TCGA-IB-7649         TCGA-IB-7651         TCGA-IB-7652 
"C19ORF55 WILD-TYPE"   "C19ORF55 MUTATED" "C19ORF55 WILD-TYPE" 
        TCGA-IB-7885         TCGA-IB-7886         TCGA-IB-7887 
"C19ORF55 WILD-TYPE" "C19ORF55 WILD-TYPE"   "C19ORF55 MUTATED" 
        TCGA-IB-7888         TCGA-IB-7889         TCGA-IB-7890 
"C19ORF55 WILD-TYPE"   "C19ORF55 MUTATED" "C19ORF55 WILD-TYPE" 
        TCGA-IB-7891         TCGA-IB-7893         TCGA-IB-7897 
"C19ORF55 WILD-TYPE" "C19ORF55 WILD-TYPE" "C19ORF55 WILD-TYPE" 
        TCGA-IB-8126         TCGA-IB-8127         TCGA-IB-A5SO 
"C19ORF55 WILD-TYPE"   "C19ORF55 MUTATED" "C19ORF55 WILD-TYPE" 
        TCGA-IB-A5SP         TCGA-IB-A5SQ         TCGA-IB-A5SS 
"C19ORF55 WILD-TYPE"   "C19ORF55 MUTATED" "C19ORF55 WILD-TYPE" 
        TCGA-IB-A5ST         TCGA-IB-A6UG         TCGA-LB-A7SX 
"C19ORF55 WILD-TYPE" "C19ORF55 WILD-TYPE"   "C19ORF55 MUTATED" 
        TCGA-OE-A75W         TCGA-PZ-A5RE         TCGA-Q3-A5QY 
"C19ORF55 WILD-TYPE"   "C19ORF55 MUTATED" "C19ORF55 WILD-TYPE" 
        TCGA-US-A779         TCGA-US-A77E         TCGA-US-A77J 
  "C19ORF55 MUTATED" "C19ORF55 WILD-TYPE" "C19ORF55 WILD-TYPE" 
        TCGA-F2-6879         TCGA-F2-6880         TCGA-F2-7273 
"C19ORF55 WILD-TYPE" "C19ORF55 WILD-TYPE" "C19ORF55 WILD-TYPE" 
        TCGA-F2-7276         TCGA-F2-A44G         TCGA-F2-A44H 
"C19ORF55 WILD-TYPE" "C19ORF55 WILD-TYPE" "C19ORF55 WILD-TYPE" 
        TCGA-FB-A4P5         TCGA-FB-A4P6         TCGA-FB-A545 
"C19ORF55 WILD-TYPE" "C19ORF55 WILD-TYPE" "C19ORF55 WILD-TYPE" 
        TCGA-FB-A5VM         TCGA-FB-A78T         TCGA-FB-A7DR 
"C19ORF55 WILD-TYPE" "C19ORF55 WILD-TYPE" "C19ORF55 WILD-TYPE" 
        TCGA-FZ-5920         TCGA-FZ-5922         TCGA-FZ-5923 
  "C19ORF55 MUTATED" "C19ORF55 WILD-TYPE" "C19ORF55 WILD-TYPE" 
        TCGA-H6-8124         TCGA-H6-A45N         TCGA-H8-A6C1 
"C19ORF55 WILD-TYPE"   "C19ORF55 MUTATED"   "C19ORF55 MUTATED" 
        TCGA-HZ-7289         TCGA-HZ-7918         TCGA-HZ-7919 
"C19ORF55 WILD-TYPE" "C19ORF55 WILD-TYPE" "C19ORF55 WILD-TYPE" 
        TCGA-HZ-7922         TCGA-HZ-7923         TCGA-HZ-7924 
  "C19ORF55 MUTATED" "C19ORF55 WILD-TYPE" "C19ORF55 WILD-TYPE" 
        TCGA-HZ-7925         TCGA-HZ-7926         TCGA-HZ-8001 
"C19ORF55 WILD-TYPE" "C19ORF55 WILD-TYPE" "C19ORF55 WILD-TYPE" 
        TCGA-HZ-8002         TCGA-HZ-8003         TCGA-HZ-8005 
"C19ORF55 WILD-TYPE" "C19ORF55 WILD-TYPE"   "C19ORF55 MUTATED" 
        TCGA-HZ-8315         TCGA-HZ-8317         TCGA-HZ-8636 
"C19ORF55 WILD-TYPE" "C19ORF55 WILD-TYPE" "C19ORF55 WILD-TYPE" 
        TCGA-HZ-8638         TCGA-HZ-A49G         TCGA-HZ-A49H 
"C19ORF55 WILD-TYPE" "C19ORF55 WILD-TYPE" "C19ORF55 WILD-TYPE" 
        TCGA-HZ-A4BH         TCGA-HZ-A4BK         TCGA-IB-7644 
"C19ORF55 WILD-TYPE"   "C19ORF55 MUTATED" "C19ORF55 WILD-TYPE" 
        TCGA-IB-7645         TCGA-IB-7646         TCGA-IB-7647 
"C19ORF55 WILD-TYPE" "C19ORF55 WILD-TYPE"   "C19ORF55 MUTATED" 
        TCGA-IB-7649         TCGA-IB-7651         TCGA-IB-7652 
"C19ORF55 WILD-TYPE"   "C19ORF55 MUTATED" "C19ORF55 WILD-TYPE" 
        TCGA-IB-7885         TCGA-IB-7886         TCGA-IB-7887 
"C19ORF55 WILD-TYPE" "C19ORF55 WILD-TYPE"   "C19ORF55 MUTATED" 
        TCGA-IB-7888         TCGA-IB-7889         TCGA-IB-7890 
"C19ORF55 WILD-TYPE"   "C19ORF55 MUTATED" "C19ORF55 WILD-TYPE" 
        TCGA-IB-7891         TCGA-IB-7893         TCGA-IB-7897 
"C19ORF55 WILD-TYPE" "C19ORF55 WILD-TYPE" "C19ORF55 WILD-TYPE" 
        TCGA-IB-8126         TCGA-IB-8127         TCGA-IB-A5SO 
"C19ORF55 WILD-TYPE"   "C19ORF55 MUTATED" "C19ORF55 WILD-TYPE" 
        TCGA-IB-A5SP         TCGA-IB-A5SQ         TCGA-IB-A5SS 
"C19ORF55 WILD-TYPE"   "C19ORF55 MUTATED" "C19ORF55 WILD-TYPE" 
        TCGA-IB-A5ST         TCGA-IB-A6UG         TCGA-LB-A7SX 
"C19ORF55 WILD-TYPE" "C19ORF55 WILD-TYPE"   "C19ORF55 MUTATED" 
        TCGA-OE-A75W         TCGA-PZ-A5RE         TCGA-Q3-A5QY 
"C19ORF55 WILD-TYPE"   "C19ORF55 MUTATED" "C19ORF55 WILD-TYPE" 
        TCGA-US-A779         TCGA-US-A77E         TCGA-US-A77J 
  "C19ORF55 MUTATED" "C19ORF55 WILD-TYPE" "C19ORF55 WILD-TYPE" 
[1] "hr=" "1.6"
D59V2, continuous
                    vv
clus                 STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  C19ORF55 MUTATED          0        1         1        13         0        0
  C19ORF55 WILD-TYPE        1        3        10        38         2        3
D59V3, multiclass
                    vv
clus                 T1+T2 T3+T4
  C19ORF55 MUTATED       1    14
  C19ORF55 WILD-TYPE     5    52
D59V4, multiclass
       clus
vv      C19ORF55 MUTATED C19ORF55 WILD-TYPE
  T1+T2                1                  5
  T3+T4               14                 52
D59V5, binary
                    cls
clus                  0  1
  C19ORF55 MUTATED    2 13
  C19ORF55 WILD-TYPE 15 41
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  C19ORF55 MUTATED      2   13
  C19ORF55 WILD-TYPE   15   41
   clus
vv  C19ORF55 MUTATED C19ORF55 WILD-TYPE
  0                2                 15
  1               13                 41
                    vv
clus                 M0 M1 MX
  C19ORF55 MUTATED    7  0  8
  C19ORF55 WILD-TYPE 32  3 22
D59V6, multiclass
    clus
vv   C19ORF55 MUTATED C19ORF55 WILD-TYPE
  M0                7                 32
  M1                0                  3
  MX                8                 22
D59V7, binary
                    cls
clus                  0  1
  C19ORF55 MUTATED   10  5
  C19ORF55 WILD-TYPE 26 31
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  C19ORF55 MUTATED     10    5
  C19ORF55 WILD-TYPE   26   31
        clus
vv       C19ORF55 MUTATED C19ORF55 WILD-TYPE
  FEMALE               10                 26
  MALE                  5                 31
                    vv
clus                 PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  C19ORF55 MUTATED                                    12
  C19ORF55 WILD-TYPE                                  53
                    vv
clus                 PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  C19ORF55 MUTATED                                       3
  C19ORF55 WILD-TYPE                                     1
                    vv
clus                 PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  C19ORF55 MUTATED                                                  0
  C19ORF55 WILD-TYPE                                                2
D59V8, multiclass
                                                  clus
vv                                                 C19ORF55 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                            12
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                           3
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                0
                                                  clus
vv                                                 C19ORF55 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                              53
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                             1
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                  2
D59V9, continuous
D59V10, continuous
                    vv
clus                 R0 R1 RX
  C19ORF55 MUTATED    7  6  0
  C19ORF55 WILD-TYPE 35 18  2
D59V11, multiclass
    clus
vv   C19ORF55 MUTATED C19ORF55 WILD-TYPE
  R0                7                 35
  R1                6                 18
  RX                0                  2
D59V12, continuous

Clustering(60) Variable = SLC4A3 MUTATION ANALYSIS
D60V1, survival
                  sevent
clus2               0  1
  SLC4A3 MUTATED    7  3
  SLC4A3 WILD-TYPE 33 26
  SLC4A3 MUTATED SLC4A3 WILD-TYPE 
              10               59 
  SLC4A3 MUTATED SLC4A3 WILD-TYPE 
               3               26 
$`SLC4A3 MUTATED`
TCGA-F2-7276 TCGA-FB-A545 TCGA-H6-8124 TCGA-H8-A6C1 TCGA-HZ-8001 TCGA-HZ-8315 
        7.10        12.66        12.89        13.02         0.62         0.92 
TCGA-HZ-8636 TCGA-IB-7651 TCGA-IB-7652 TCGA-IB-7888 
        0.16        19.82        15.65        43.79 

$`SLC4A3 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-A44G TCGA-F2-A44H TCGA-FB-A4P5 
       10.98         9.70        11.84         5.03        19.27         0.13 
TCGA-FB-A4P6 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR TCGA-FZ-5920 TCGA-FZ-5922 
       11.93         2.47         0.03         5.46         2.01        36.20 
TCGA-FZ-5923 TCGA-H6-A45N TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7922 
       20.81         7.66         7.89         0.92         0.66         0.13 
TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8002 TCGA-HZ-8003 
        0.26        12.13        11.87         0.26         0.79         0.69 
TCGA-HZ-8005 TCGA-HZ-8317 TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH 
        3.95         0.53         2.99         0.76         0.95         6.38 
TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 
        1.51        11.41        49.38         4.77        21.90        15.35 
TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 
       27.98         4.04         3.62        15.81        19.66        16.04 
TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP 
        3.85        15.98         0.56        17.16        10.82         9.86 
TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W 
        7.20        15.12         0.26         1.35         4.18         3.62 
TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
        8.12        13.68        16.80        14.14        18.67 

  SLC4A3 MUTATED SLC4A3 WILD-TYPE 
            0.16             0.03 
  SLC4A3 MUTATED SLC4A3 WILD-TYPE 
           43.79            49.38 
  SLC4A3 MUTATED SLC4A3 WILD-TYPE 
          12.775            7.200 
[1] "0.2 - 43.8 (12.8)" "0.0 - 49.4 (7.2)" 
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
"SLC4A3 WILD-TYPE" "SLC4A3 WILD-TYPE" "SLC4A3 WILD-TYPE"   "SLC4A3 MUTATED" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"SLC4A3 WILD-TYPE" "SLC4A3 WILD-TYPE" "SLC4A3 WILD-TYPE" "SLC4A3 WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
  "SLC4A3 MUTATED" "SLC4A3 WILD-TYPE" "SLC4A3 WILD-TYPE" "SLC4A3 WILD-TYPE" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"SLC4A3 WILD-TYPE" "SLC4A3 WILD-TYPE" "SLC4A3 WILD-TYPE"   "SLC4A3 MUTATED" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
"SLC4A3 WILD-TYPE"   "SLC4A3 MUTATED" "SLC4A3 WILD-TYPE" "SLC4A3 WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
"SLC4A3 WILD-TYPE" "SLC4A3 WILD-TYPE" "SLC4A3 WILD-TYPE" "SLC4A3 WILD-TYPE" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"SLC4A3 WILD-TYPE" "SLC4A3 WILD-TYPE"   "SLC4A3 MUTATED" "SLC4A3 WILD-TYPE" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
"SLC4A3 WILD-TYPE" "SLC4A3 WILD-TYPE"   "SLC4A3 MUTATED" "SLC4A3 WILD-TYPE" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
  "SLC4A3 MUTATED" "SLC4A3 WILD-TYPE" "SLC4A3 WILD-TYPE" "SLC4A3 WILD-TYPE" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
"SLC4A3 WILD-TYPE" "SLC4A3 WILD-TYPE" "SLC4A3 WILD-TYPE" "SLC4A3 WILD-TYPE" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
"SLC4A3 WILD-TYPE" "SLC4A3 WILD-TYPE" "SLC4A3 WILD-TYPE"   "SLC4A3 MUTATED" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
  "SLC4A3 MUTATED" "SLC4A3 WILD-TYPE" "SLC4A3 WILD-TYPE" "SLC4A3 WILD-TYPE" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
  "SLC4A3 MUTATED" "SLC4A3 WILD-TYPE" "SLC4A3 WILD-TYPE" "SLC4A3 WILD-TYPE" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
"SLC4A3 WILD-TYPE" "SLC4A3 WILD-TYPE" "SLC4A3 WILD-TYPE" "SLC4A3 WILD-TYPE" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"SLC4A3 WILD-TYPE" "SLC4A3 WILD-TYPE" "SLC4A3 WILD-TYPE" "SLC4A3 WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"SLC4A3 WILD-TYPE" "SLC4A3 WILD-TYPE" "SLC4A3 WILD-TYPE" "SLC4A3 WILD-TYPE" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
"SLC4A3 WILD-TYPE" "SLC4A3 WILD-TYPE" "SLC4A3 WILD-TYPE" "SLC4A3 WILD-TYPE" 
      TCGA-US-A77J 
"SLC4A3 WILD-TYPE" 
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
"SLC4A3 WILD-TYPE" "SLC4A3 WILD-TYPE" "SLC4A3 WILD-TYPE"   "SLC4A3 MUTATED" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"SLC4A3 WILD-TYPE" "SLC4A3 WILD-TYPE" "SLC4A3 WILD-TYPE" "SLC4A3 WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
  "SLC4A3 MUTATED" "SLC4A3 WILD-TYPE" "SLC4A3 WILD-TYPE" "SLC4A3 WILD-TYPE" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"SLC4A3 WILD-TYPE" "SLC4A3 WILD-TYPE" "SLC4A3 WILD-TYPE"   "SLC4A3 MUTATED" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
"SLC4A3 WILD-TYPE"   "SLC4A3 MUTATED" "SLC4A3 WILD-TYPE" "SLC4A3 WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
"SLC4A3 WILD-TYPE" "SLC4A3 WILD-TYPE" "SLC4A3 WILD-TYPE" "SLC4A3 WILD-TYPE" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"SLC4A3 WILD-TYPE" "SLC4A3 WILD-TYPE"   "SLC4A3 MUTATED" "SLC4A3 WILD-TYPE" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
"SLC4A3 WILD-TYPE" "SLC4A3 WILD-TYPE"   "SLC4A3 MUTATED" "SLC4A3 WILD-TYPE" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
  "SLC4A3 MUTATED" "SLC4A3 WILD-TYPE" "SLC4A3 WILD-TYPE" "SLC4A3 WILD-TYPE" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
"SLC4A3 WILD-TYPE" "SLC4A3 WILD-TYPE" "SLC4A3 WILD-TYPE" "SLC4A3 WILD-TYPE" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
"SLC4A3 WILD-TYPE" "SLC4A3 WILD-TYPE" "SLC4A3 WILD-TYPE"   "SLC4A3 MUTATED" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
  "SLC4A3 MUTATED" "SLC4A3 WILD-TYPE" "SLC4A3 WILD-TYPE" "SLC4A3 WILD-TYPE" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
  "SLC4A3 MUTATED" "SLC4A3 WILD-TYPE" "SLC4A3 WILD-TYPE" "SLC4A3 WILD-TYPE" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
"SLC4A3 WILD-TYPE" "SLC4A3 WILD-TYPE" "SLC4A3 WILD-TYPE" "SLC4A3 WILD-TYPE" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"SLC4A3 WILD-TYPE" "SLC4A3 WILD-TYPE" "SLC4A3 WILD-TYPE" "SLC4A3 WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"SLC4A3 WILD-TYPE" "SLC4A3 WILD-TYPE" "SLC4A3 WILD-TYPE" "SLC4A3 WILD-TYPE" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
"SLC4A3 WILD-TYPE" "SLC4A3 WILD-TYPE" "SLC4A3 WILD-TYPE" "SLC4A3 WILD-TYPE" 
      TCGA-US-A77J 
"SLC4A3 WILD-TYPE" 
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
"SLC4A3 WILD-TYPE" "SLC4A3 WILD-TYPE" "SLC4A3 WILD-TYPE"   "SLC4A3 MUTATED" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"SLC4A3 WILD-TYPE" "SLC4A3 WILD-TYPE" "SLC4A3 WILD-TYPE" "SLC4A3 WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
  "SLC4A3 MUTATED" "SLC4A3 WILD-TYPE" "SLC4A3 WILD-TYPE" "SLC4A3 WILD-TYPE" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"SLC4A3 WILD-TYPE" "SLC4A3 WILD-TYPE" "SLC4A3 WILD-TYPE"   "SLC4A3 MUTATED" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
"SLC4A3 WILD-TYPE"   "SLC4A3 MUTATED" "SLC4A3 WILD-TYPE" "SLC4A3 WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
"SLC4A3 WILD-TYPE" "SLC4A3 WILD-TYPE" "SLC4A3 WILD-TYPE" "SLC4A3 WILD-TYPE" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"SLC4A3 WILD-TYPE" "SLC4A3 WILD-TYPE"   "SLC4A3 MUTATED" "SLC4A3 WILD-TYPE" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
"SLC4A3 WILD-TYPE" "SLC4A3 WILD-TYPE"   "SLC4A3 MUTATED" "SLC4A3 WILD-TYPE" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
  "SLC4A3 MUTATED" "SLC4A3 WILD-TYPE" "SLC4A3 WILD-TYPE" "SLC4A3 WILD-TYPE" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
"SLC4A3 WILD-TYPE" "SLC4A3 WILD-TYPE" "SLC4A3 WILD-TYPE" "SLC4A3 WILD-TYPE" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
"SLC4A3 WILD-TYPE" "SLC4A3 WILD-TYPE" "SLC4A3 WILD-TYPE"   "SLC4A3 MUTATED" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
  "SLC4A3 MUTATED" "SLC4A3 WILD-TYPE" "SLC4A3 WILD-TYPE" "SLC4A3 WILD-TYPE" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
  "SLC4A3 MUTATED" "SLC4A3 WILD-TYPE" "SLC4A3 WILD-TYPE" "SLC4A3 WILD-TYPE" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
"SLC4A3 WILD-TYPE" "SLC4A3 WILD-TYPE" "SLC4A3 WILD-TYPE" "SLC4A3 WILD-TYPE" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"SLC4A3 WILD-TYPE" "SLC4A3 WILD-TYPE" "SLC4A3 WILD-TYPE" "SLC4A3 WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"SLC4A3 WILD-TYPE" "SLC4A3 WILD-TYPE" "SLC4A3 WILD-TYPE" "SLC4A3 WILD-TYPE" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
"SLC4A3 WILD-TYPE" "SLC4A3 WILD-TYPE" "SLC4A3 WILD-TYPE" "SLC4A3 WILD-TYPE" 
      TCGA-US-A77J 
"SLC4A3 WILD-TYPE" 
[1] "hr=" "2.1"
D60V2, continuous
                  vv
clus               STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  SLC4A3 MUTATED          0        0         3         5         1        1
  SLC4A3 WILD-TYPE        1        4         8        46         1        2
D60V3, multiclass
                  vv
clus               T1+T2 T3+T4
  SLC4A3 MUTATED       0    10
  SLC4A3 WILD-TYPE     6    56
D60V4, multiclass
       clus
vv      SLC4A3 MUTATED SLC4A3 WILD-TYPE
  T1+T2              0                6
  T3+T4             10               56
D60V5, binary
                  cls
clus                0  1
  SLC4A3 MUTATED    5  5
  SLC4A3 WILD-TYPE 12 49
[1] "tbl2"
                  cls
clus               [,1] [,2]
  SLC4A3 MUTATED      5    5
  SLC4A3 WILD-TYPE   12   49
   clus
vv  SLC4A3 MUTATED SLC4A3 WILD-TYPE
  0              5               12
  1              5               49
                  vv
clus               M0 M1 MX
  SLC4A3 MUTATED    6  1  3
  SLC4A3 WILD-TYPE 33  2 27
D60V6, multiclass
    clus
vv   SLC4A3 MUTATED SLC4A3 WILD-TYPE
  M0              6               33
  M1              1                2
  MX              3               27
D60V7, binary
                  cls
clus                0  1
  SLC4A3 MUTATED    7  3
  SLC4A3 WILD-TYPE 29 33
[1] "tbl2"
                  cls
clus               [,1] [,2]
  SLC4A3 MUTATED      7    3
  SLC4A3 WILD-TYPE   29   33
        clus
vv       SLC4A3 MUTATED SLC4A3 WILD-TYPE
  FEMALE              7               29
  MALE                3               33
                  vv
clus               PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  SLC4A3 MUTATED                                     9
  SLC4A3 WILD-TYPE                                  56
                  vv
clus               PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  SLC4A3 MUTATED                                       1
  SLC4A3 WILD-TYPE                                     3
                  vv
clus               PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  SLC4A3 MUTATED                                                  0
  SLC4A3 WILD-TYPE                                                2
D60V8, multiclass
                                                  clus
vv                                                 SLC4A3 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                           9
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                         1
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA              0
                                                  clus
vv                                                 SLC4A3 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                            56
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                           3
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                2
D60V9, continuous
D60V10, continuous
                  vv
clus               R0 R1 RX
  SLC4A3 MUTATED    6  3  0
  SLC4A3 WILD-TYPE 36 21  2
D60V11, multiclass
    clus
vv   SLC4A3 MUTATED SLC4A3 WILD-TYPE
  R0              6               36
  R1              3               21
  RX              0                2
D60V12, continuous

Clustering(61) Variable = CEL MUTATION ANALYSIS
D61V1, survival
               sevent
clus2            0  1
  CEL MUTATED    2  4
  CEL WILD-TYPE 38 25
  CEL MUTATED CEL WILD-TYPE 
            6            63 
  CEL MUTATED CEL WILD-TYPE 
            4            25 
$`CEL MUTATED`
TCGA-F2-7276 TCGA-HZ-8001 TCGA-HZ-8003 TCGA-IB-7644 TCGA-IB-7893 TCGA-IB-A5SQ 
        7.10         0.62         0.69        11.41         3.85         7.20 

$`CEL WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-A44G TCGA-F2-A44H TCGA-FB-A4P5 
       10.98         9.70        11.84         5.03        19.27         0.13 
TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR TCGA-FZ-5920 
       11.93        12.66         2.47         0.03         5.46         2.01 
TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7289 
       36.20        20.81        12.89         7.66        13.02         7.89 
TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 
        0.92         0.66         0.13         0.26        12.13        11.87 
TCGA-HZ-7926 TCGA-HZ-8002 TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8636 
        0.26         0.79         3.95         0.92         0.53         0.16 
TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7645 
        2.99         0.76         0.95         6.38         1.51        49.38 
TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7651 TCGA-IB-7652 TCGA-IB-7885 
        4.77        21.90        15.35        19.82        15.65        27.98 
TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 
        4.04         3.62        43.79        15.81        19.66        16.04 
TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SS 
       15.98         0.56        17.16        10.82         9.86        15.12 
TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W TCGA-PZ-A5RE TCGA-Q3-A5QY 
        0.26         1.35         4.18         3.62         8.12        13.68 
TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
       16.80        14.14        18.67 

  CEL MUTATED CEL WILD-TYPE 
         0.62          0.03 
  CEL MUTATED CEL WILD-TYPE 
        11.41         49.38 
  CEL MUTATED CEL WILD-TYPE 
        5.475         8.120 
[1] "0.6 - 11.4 (5.5)" "0.0 - 49.4 (8.1)"
   TCGA-F2-6879    TCGA-F2-6880    TCGA-F2-7273    TCGA-F2-7276    TCGA-F2-A44G 
"CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE"   "CEL MUTATED" "CEL WILD-TYPE" 
   TCGA-F2-A44H    TCGA-FB-A4P5    TCGA-FB-A4P6    TCGA-FB-A545    TCGA-FB-A5VM 
"CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" 
   TCGA-FB-A78T    TCGA-FB-A7DR    TCGA-FZ-5920    TCGA-FZ-5922    TCGA-FZ-5923 
"CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" 
   TCGA-H6-8124    TCGA-H6-A45N    TCGA-H8-A6C1    TCGA-HZ-7289    TCGA-HZ-7918 
"CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" 
   TCGA-HZ-7919    TCGA-HZ-7922    TCGA-HZ-7923    TCGA-HZ-7924    TCGA-HZ-7925 
"CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" 
   TCGA-HZ-7926    TCGA-HZ-8001    TCGA-HZ-8002    TCGA-HZ-8003    TCGA-HZ-8005 
"CEL WILD-TYPE"   "CEL MUTATED" "CEL WILD-TYPE"   "CEL MUTATED" "CEL WILD-TYPE" 
   TCGA-HZ-8315    TCGA-HZ-8317    TCGA-HZ-8636    TCGA-HZ-8638    TCGA-HZ-A49G 
"CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" 
   TCGA-HZ-A49H    TCGA-HZ-A4BH    TCGA-HZ-A4BK    TCGA-IB-7644    TCGA-IB-7645 
"CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE"   "CEL MUTATED" "CEL WILD-TYPE" 
   TCGA-IB-7646    TCGA-IB-7647    TCGA-IB-7649    TCGA-IB-7651    TCGA-IB-7652 
"CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" 
   TCGA-IB-7885    TCGA-IB-7886    TCGA-IB-7887    TCGA-IB-7888    TCGA-IB-7889 
"CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" 
   TCGA-IB-7890    TCGA-IB-7891    TCGA-IB-7893    TCGA-IB-7897    TCGA-IB-8126 
"CEL WILD-TYPE" "CEL WILD-TYPE"   "CEL MUTATED" "CEL WILD-TYPE" "CEL WILD-TYPE" 
   TCGA-IB-8127    TCGA-IB-A5SO    TCGA-IB-A5SP    TCGA-IB-A5SQ    TCGA-IB-A5SS 
"CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE"   "CEL MUTATED" "CEL WILD-TYPE" 
   TCGA-IB-A5ST    TCGA-IB-A6UG    TCGA-LB-A7SX    TCGA-OE-A75W    TCGA-PZ-A5RE 
"CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" 
   TCGA-Q3-A5QY    TCGA-US-A779    TCGA-US-A77E    TCGA-US-A77J 
"CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" 
   TCGA-F2-6879    TCGA-F2-6880    TCGA-F2-7273    TCGA-F2-7276    TCGA-F2-A44G 
"CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE"   "CEL MUTATED" "CEL WILD-TYPE" 
   TCGA-F2-A44H    TCGA-FB-A4P5    TCGA-FB-A4P6    TCGA-FB-A545    TCGA-FB-A5VM 
"CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" 
   TCGA-FB-A78T    TCGA-FB-A7DR    TCGA-FZ-5920    TCGA-FZ-5922    TCGA-FZ-5923 
"CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" 
   TCGA-H6-8124    TCGA-H6-A45N    TCGA-H8-A6C1    TCGA-HZ-7289    TCGA-HZ-7918 
"CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" 
   TCGA-HZ-7919    TCGA-HZ-7922    TCGA-HZ-7923    TCGA-HZ-7924    TCGA-HZ-7925 
"CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" 
   TCGA-HZ-7926    TCGA-HZ-8001    TCGA-HZ-8002    TCGA-HZ-8003    TCGA-HZ-8005 
"CEL WILD-TYPE"   "CEL MUTATED" "CEL WILD-TYPE"   "CEL MUTATED" "CEL WILD-TYPE" 
   TCGA-HZ-8315    TCGA-HZ-8317    TCGA-HZ-8636    TCGA-HZ-8638    TCGA-HZ-A49G 
"CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" 
   TCGA-HZ-A49H    TCGA-HZ-A4BH    TCGA-HZ-A4BK    TCGA-IB-7644    TCGA-IB-7645 
"CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE"   "CEL MUTATED" "CEL WILD-TYPE" 
   TCGA-IB-7646    TCGA-IB-7647    TCGA-IB-7649    TCGA-IB-7651    TCGA-IB-7652 
"CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" 
   TCGA-IB-7885    TCGA-IB-7886    TCGA-IB-7887    TCGA-IB-7888    TCGA-IB-7889 
"CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" 
   TCGA-IB-7890    TCGA-IB-7891    TCGA-IB-7893    TCGA-IB-7897    TCGA-IB-8126 
"CEL WILD-TYPE" "CEL WILD-TYPE"   "CEL MUTATED" "CEL WILD-TYPE" "CEL WILD-TYPE" 
   TCGA-IB-8127    TCGA-IB-A5SO    TCGA-IB-A5SP    TCGA-IB-A5SQ    TCGA-IB-A5SS 
"CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE"   "CEL MUTATED" "CEL WILD-TYPE" 
   TCGA-IB-A5ST    TCGA-IB-A6UG    TCGA-LB-A7SX    TCGA-OE-A75W    TCGA-PZ-A5RE 
"CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" 
   TCGA-Q3-A5QY    TCGA-US-A779    TCGA-US-A77E    TCGA-US-A77J 
"CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" 
   TCGA-F2-6879    TCGA-F2-6880    TCGA-F2-7273    TCGA-F2-7276    TCGA-F2-A44G 
"CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE"   "CEL MUTATED" "CEL WILD-TYPE" 
   TCGA-F2-A44H    TCGA-FB-A4P5    TCGA-FB-A4P6    TCGA-FB-A545    TCGA-FB-A5VM 
"CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" 
   TCGA-FB-A78T    TCGA-FB-A7DR    TCGA-FZ-5920    TCGA-FZ-5922    TCGA-FZ-5923 
"CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" 
   TCGA-H6-8124    TCGA-H6-A45N    TCGA-H8-A6C1    TCGA-HZ-7289    TCGA-HZ-7918 
"CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" 
   TCGA-HZ-7919    TCGA-HZ-7922    TCGA-HZ-7923    TCGA-HZ-7924    TCGA-HZ-7925 
"CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" 
   TCGA-HZ-7926    TCGA-HZ-8001    TCGA-HZ-8002    TCGA-HZ-8003    TCGA-HZ-8005 
"CEL WILD-TYPE"   "CEL MUTATED" "CEL WILD-TYPE"   "CEL MUTATED" "CEL WILD-TYPE" 
   TCGA-HZ-8315    TCGA-HZ-8317    TCGA-HZ-8636    TCGA-HZ-8638    TCGA-HZ-A49G 
"CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" 
   TCGA-HZ-A49H    TCGA-HZ-A4BH    TCGA-HZ-A4BK    TCGA-IB-7644    TCGA-IB-7645 
"CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE"   "CEL MUTATED" "CEL WILD-TYPE" 
   TCGA-IB-7646    TCGA-IB-7647    TCGA-IB-7649    TCGA-IB-7651    TCGA-IB-7652 
"CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" 
   TCGA-IB-7885    TCGA-IB-7886    TCGA-IB-7887    TCGA-IB-7888    TCGA-IB-7889 
"CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" 
   TCGA-IB-7890    TCGA-IB-7891    TCGA-IB-7893    TCGA-IB-7897    TCGA-IB-8126 
"CEL WILD-TYPE" "CEL WILD-TYPE"   "CEL MUTATED" "CEL WILD-TYPE" "CEL WILD-TYPE" 
   TCGA-IB-8127    TCGA-IB-A5SO    TCGA-IB-A5SP    TCGA-IB-A5SQ    TCGA-IB-A5SS 
"CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE"   "CEL MUTATED" "CEL WILD-TYPE" 
   TCGA-IB-A5ST    TCGA-IB-A6UG    TCGA-LB-A7SX    TCGA-OE-A75W    TCGA-PZ-A5RE 
"CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" 
   TCGA-Q3-A5QY    TCGA-US-A779    TCGA-US-A77E    TCGA-US-A77J 
"CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" 
[1] "hr=" "5.7"
D61V2, continuous
               vv
clus            STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  CEL MUTATED          0        2         1         2         1        1
  CEL WILD-TYPE        1        2        10        49         1        2
D61V3, multiclass
               vv
clus            T1+T2 T3+T4
  CEL MUTATED       2     5
  CEL WILD-TYPE     4    61
D61V4, multiclass
       clus
vv      CEL MUTATED CEL WILD-TYPE
  T1+T2           2             4
  T3+T4           5            61
D61V5, binary
               cls
clus             0  1
  CEL MUTATED    4  3
  CEL WILD-TYPE 13 51
[1] "tbl2"
               cls
clus            [,1] [,2]
  CEL MUTATED      4    3
  CEL WILD-TYPE   13   51
   clus
vv  CEL MUTATED CEL WILD-TYPE
  0           4            13
  1           3            51
               vv
clus            M0 M1 MX
  CEL MUTATED    3  1  3
  CEL WILD-TYPE 36  2 27
D61V6, multiclass
    clus
vv   CEL MUTATED CEL WILD-TYPE
  M0           3            36
  M1           1             2
  MX           3            27
D61V7, binary
               cls
clus             0  1
  CEL MUTATED    3  4
  CEL WILD-TYPE 33 32
[1] "tbl2"
               cls
clus            [,1] [,2]
  CEL MUTATED      3    4
  CEL WILD-TYPE   33   32
        clus
vv       CEL MUTATED CEL WILD-TYPE
  FEMALE           3            33
  MALE             4            32
               vv
clus            PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  CEL MUTATED                                     7
  CEL WILD-TYPE                                  58
               vv
clus            PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  CEL MUTATED                                       0
  CEL WILD-TYPE                                     4
               vv
clus            PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  CEL MUTATED                                                  0
  CEL WILD-TYPE                                                2
D61V8, multiclass
                                                  clus
vv                                                 CEL MUTATED CEL WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                        7            58
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                      0             4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA           0             2
D61V9, continuous
[1] "Remove cluster labels:" "CEL MUTATED"           
clus
  CEL MUTATED CEL WILD-TYPE 
            1            21 
   TCGA-F2-6880    TCGA-FB-A4P5    TCGA-FB-A4P6    TCGA-FB-A5VM    TCGA-FB-A78T 
"CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" 
   TCGA-FB-A7DR    TCGA-H6-8124    TCGA-H6-A45N    TCGA-H8-A6C1    TCGA-IB-7649 
"CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" 
   TCGA-IB-7651    TCGA-IB-7885    TCGA-IB-7886    TCGA-IB-7887    TCGA-IB-7891 
"CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" 
   TCGA-IB-8126    TCGA-IB-8127    TCGA-IB-A5SS    TCGA-IB-A6UG    TCGA-LB-A7SX 
"CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" 
   TCGA-OE-A75W 
"CEL WILD-TYPE" 
D61V10, continuous
[1] "Remove cluster labels:" "CEL MUTATED"           
clus
  CEL MUTATED CEL WILD-TYPE 
            1            18 
   TCGA-FB-A4P5    TCGA-FB-A4P6    TCGA-FB-A5VM    TCGA-FB-A78T    TCGA-FB-A7DR 
"CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" 
   TCGA-H6-8124    TCGA-H8-A6C1    TCGA-IB-7649    TCGA-IB-7651    TCGA-IB-7885 
"CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" 
   TCGA-IB-7886    TCGA-IB-7891    TCGA-IB-8126    TCGA-IB-8127    TCGA-IB-A5SS 
"CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" 
   TCGA-IB-A6UG    TCGA-LB-A7SX    TCGA-OE-A75W 
"CEL WILD-TYPE" "CEL WILD-TYPE" "CEL WILD-TYPE" 
               vv
clus            R0 R1 RX
  CEL MUTATED    6  1  0
  CEL WILD-TYPE 36 23  2
D61V11, multiclass
    clus
vv   CEL MUTATED CEL WILD-TYPE
  R0           6            36
  R1           1            23
  RX           0             2
D61V12, continuous

Clustering(62) Variable = APOBEC4 MUTATION ANALYSIS
D62V1, survival
                   sevent
clus2                0  1
  APOBEC4 MUTATED    3  4
  APOBEC4 WILD-TYPE 37 25
  APOBEC4 MUTATED APOBEC4 WILD-TYPE 
                7                62 
  APOBEC4 MUTATED APOBEC4 WILD-TYPE 
                4                25 
$`APOBEC4 MUTATED`
TCGA-F2-A44G TCGA-HZ-7919 TCGA-HZ-8638 TCGA-HZ-A49G TCGA-IB-7644 TCGA-IB-7646 
        5.03         0.66         2.99         0.76        11.41         4.77 
TCGA-IB-7889 
       15.81 

$`APOBEC4 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44H TCGA-FB-A4P5 
       10.98         9.70        11.84         7.10        19.27         0.13 
TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR TCGA-FZ-5920 
       11.93        12.66         2.47         0.03         5.46         2.01 
TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7289 
       36.20        20.81        12.89         7.66        13.02         7.89 
TCGA-HZ-7918 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 
        0.92         0.13         0.26        12.13        11.87         0.26 
TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 
        0.62         0.79         0.69         3.95         0.92         0.53 
TCGA-HZ-8636 TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7645 TCGA-IB-7647 
        0.16         0.95         6.38         1.51        49.38        21.90 
TCGA-IB-7649 TCGA-IB-7651 TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 
       15.35        19.82        15.65        27.98         4.04         3.62 
TCGA-IB-7888 TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-8126 
       43.79        19.66        16.04         3.85        15.98         0.56 
TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST 
       17.16        10.82         9.86         7.20        15.12         0.26 
TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 
        1.35         4.18         3.62         8.12        13.68        16.80 
TCGA-US-A77E TCGA-US-A77J 
       14.14        18.67 

  APOBEC4 MUTATED APOBEC4 WILD-TYPE 
             0.66              0.03 
  APOBEC4 MUTATED APOBEC4 WILD-TYPE 
            15.81             49.38 
  APOBEC4 MUTATED APOBEC4 WILD-TYPE 
            4.770             8.005 
[1] "0.7 - 15.8 (4.8)" "0.0 - 49.4 (8.0)"
       TCGA-F2-6879        TCGA-F2-6880        TCGA-F2-7273        TCGA-F2-7276 
"APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" 
       TCGA-F2-A44G        TCGA-F2-A44H        TCGA-FB-A4P5        TCGA-FB-A4P6 
  "APOBEC4 MUTATED" "APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" 
       TCGA-FB-A545        TCGA-FB-A5VM        TCGA-FB-A78T        TCGA-FB-A7DR 
"APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" 
       TCGA-FZ-5920        TCGA-FZ-5922        TCGA-FZ-5923        TCGA-H6-8124 
"APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" 
       TCGA-H6-A45N        TCGA-H8-A6C1        TCGA-HZ-7289        TCGA-HZ-7918 
"APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" 
       TCGA-HZ-7919        TCGA-HZ-7922        TCGA-HZ-7923        TCGA-HZ-7924 
  "APOBEC4 MUTATED" "APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" 
       TCGA-HZ-7925        TCGA-HZ-7926        TCGA-HZ-8001        TCGA-HZ-8002 
"APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" 
       TCGA-HZ-8003        TCGA-HZ-8005        TCGA-HZ-8315        TCGA-HZ-8317 
"APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" 
       TCGA-HZ-8636        TCGA-HZ-8638        TCGA-HZ-A49G        TCGA-HZ-A49H 
"APOBEC4 WILD-TYPE"   "APOBEC4 MUTATED"   "APOBEC4 MUTATED" "APOBEC4 WILD-TYPE" 
       TCGA-HZ-A4BH        TCGA-HZ-A4BK        TCGA-IB-7644        TCGA-IB-7645 
"APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE"   "APOBEC4 MUTATED" "APOBEC4 WILD-TYPE" 
       TCGA-IB-7646        TCGA-IB-7647        TCGA-IB-7649        TCGA-IB-7651 
  "APOBEC4 MUTATED" "APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" 
       TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-7886        TCGA-IB-7887 
"APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" 
       TCGA-IB-7888        TCGA-IB-7889        TCGA-IB-7890        TCGA-IB-7891 
"APOBEC4 WILD-TYPE"   "APOBEC4 MUTATED" "APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" 
       TCGA-IB-7893        TCGA-IB-7897        TCGA-IB-8126        TCGA-IB-8127 
"APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" 
       TCGA-IB-A5SO        TCGA-IB-A5SP        TCGA-IB-A5SQ        TCGA-IB-A5SS 
"APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" 
       TCGA-IB-A5ST        TCGA-IB-A6UG        TCGA-LB-A7SX        TCGA-OE-A75W 
"APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" 
       TCGA-PZ-A5RE        TCGA-Q3-A5QY        TCGA-US-A779        TCGA-US-A77E 
"APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" 
       TCGA-US-A77J 
"APOBEC4 WILD-TYPE" 
       TCGA-F2-6879        TCGA-F2-6880        TCGA-F2-7273        TCGA-F2-7276 
"APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" 
       TCGA-F2-A44G        TCGA-F2-A44H        TCGA-FB-A4P5        TCGA-FB-A4P6 
  "APOBEC4 MUTATED" "APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" 
       TCGA-FB-A545        TCGA-FB-A5VM        TCGA-FB-A78T        TCGA-FB-A7DR 
"APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" 
       TCGA-FZ-5920        TCGA-FZ-5922        TCGA-FZ-5923        TCGA-H6-8124 
"APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" 
       TCGA-H6-A45N        TCGA-H8-A6C1        TCGA-HZ-7289        TCGA-HZ-7918 
"APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" 
       TCGA-HZ-7919        TCGA-HZ-7922        TCGA-HZ-7923        TCGA-HZ-7924 
  "APOBEC4 MUTATED" "APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" 
       TCGA-HZ-7925        TCGA-HZ-7926        TCGA-HZ-8001        TCGA-HZ-8002 
"APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" 
       TCGA-HZ-8003        TCGA-HZ-8005        TCGA-HZ-8315        TCGA-HZ-8317 
"APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" 
       TCGA-HZ-8636        TCGA-HZ-8638        TCGA-HZ-A49G        TCGA-HZ-A49H 
"APOBEC4 WILD-TYPE"   "APOBEC4 MUTATED"   "APOBEC4 MUTATED" "APOBEC4 WILD-TYPE" 
       TCGA-HZ-A4BH        TCGA-HZ-A4BK        TCGA-IB-7644        TCGA-IB-7645 
"APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE"   "APOBEC4 MUTATED" "APOBEC4 WILD-TYPE" 
       TCGA-IB-7646        TCGA-IB-7647        TCGA-IB-7649        TCGA-IB-7651 
  "APOBEC4 MUTATED" "APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" 
       TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-7886        TCGA-IB-7887 
"APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" 
       TCGA-IB-7888        TCGA-IB-7889        TCGA-IB-7890        TCGA-IB-7891 
"APOBEC4 WILD-TYPE"   "APOBEC4 MUTATED" "APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" 
       TCGA-IB-7893        TCGA-IB-7897        TCGA-IB-8126        TCGA-IB-8127 
"APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" 
       TCGA-IB-A5SO        TCGA-IB-A5SP        TCGA-IB-A5SQ        TCGA-IB-A5SS 
"APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" 
       TCGA-IB-A5ST        TCGA-IB-A6UG        TCGA-LB-A7SX        TCGA-OE-A75W 
"APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" 
       TCGA-PZ-A5RE        TCGA-Q3-A5QY        TCGA-US-A779        TCGA-US-A77E 
"APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" 
       TCGA-US-A77J 
"APOBEC4 WILD-TYPE" 
       TCGA-F2-6879        TCGA-F2-6880        TCGA-F2-7273        TCGA-F2-7276 
"APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" 
       TCGA-F2-A44G        TCGA-F2-A44H        TCGA-FB-A4P5        TCGA-FB-A4P6 
  "APOBEC4 MUTATED" "APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" 
       TCGA-FB-A545        TCGA-FB-A5VM        TCGA-FB-A78T        TCGA-FB-A7DR 
"APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" 
       TCGA-FZ-5920        TCGA-FZ-5922        TCGA-FZ-5923        TCGA-H6-8124 
"APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" 
       TCGA-H6-A45N        TCGA-H8-A6C1        TCGA-HZ-7289        TCGA-HZ-7918 
"APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" 
       TCGA-HZ-7919        TCGA-HZ-7922        TCGA-HZ-7923        TCGA-HZ-7924 
  "APOBEC4 MUTATED" "APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" 
       TCGA-HZ-7925        TCGA-HZ-7926        TCGA-HZ-8001        TCGA-HZ-8002 
"APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" 
       TCGA-HZ-8003        TCGA-HZ-8005        TCGA-HZ-8315        TCGA-HZ-8317 
"APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" 
       TCGA-HZ-8636        TCGA-HZ-8638        TCGA-HZ-A49G        TCGA-HZ-A49H 
"APOBEC4 WILD-TYPE"   "APOBEC4 MUTATED"   "APOBEC4 MUTATED" "APOBEC4 WILD-TYPE" 
       TCGA-HZ-A4BH        TCGA-HZ-A4BK        TCGA-IB-7644        TCGA-IB-7645 
"APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE"   "APOBEC4 MUTATED" "APOBEC4 WILD-TYPE" 
       TCGA-IB-7646        TCGA-IB-7647        TCGA-IB-7649        TCGA-IB-7651 
  "APOBEC4 MUTATED" "APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" 
       TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-7886        TCGA-IB-7887 
"APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" 
       TCGA-IB-7888        TCGA-IB-7889        TCGA-IB-7890        TCGA-IB-7891 
"APOBEC4 WILD-TYPE"   "APOBEC4 MUTATED" "APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" 
       TCGA-IB-7893        TCGA-IB-7897        TCGA-IB-8126        TCGA-IB-8127 
"APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" 
       TCGA-IB-A5SO        TCGA-IB-A5SP        TCGA-IB-A5SQ        TCGA-IB-A5SS 
"APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" 
       TCGA-IB-A5ST        TCGA-IB-A6UG        TCGA-LB-A7SX        TCGA-OE-A75W 
"APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" 
       TCGA-PZ-A5RE        TCGA-Q3-A5QY        TCGA-US-A779        TCGA-US-A77E 
"APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" 
       TCGA-US-A77J 
"APOBEC4 WILD-TYPE" 
[1] "hr=" "3.4"
D62V2, continuous
                   vv
clus                STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  APOBEC4 MUTATED          1        1         0         6         0        1
  APOBEC4 WILD-TYPE        0        3        11        45         2        2
D62V3, multiclass
                   vv
clus                T1+T2 T3+T4
  APOBEC4 MUTATED       3     6
  APOBEC4 WILD-TYPE     3    60
D62V4, multiclass
       clus
vv      APOBEC4 MUTATED APOBEC4 WILD-TYPE
  T1+T2               3                 3
  T3+T4               6                60
D62V5, binary
                   cls
clus                 0  1
  APOBEC4 MUTATED    2  7
  APOBEC4 WILD-TYPE 15 47
[1] "tbl2"
                   cls
clus                [,1] [,2]
  APOBEC4 MUTATED      2    7
  APOBEC4 WILD-TYPE   15   47
   clus
vv  APOBEC4 MUTATED APOBEC4 WILD-TYPE
  0               2                15
  1               7                47
                   vv
clus                M0 M1 MX
  APOBEC4 MUTATED    4  1  4
  APOBEC4 WILD-TYPE 35  2 26
D62V6, multiclass
    clus
vv   APOBEC4 MUTATED APOBEC4 WILD-TYPE
  M0               4                35
  M1               1                 2
  MX               4                26
D62V7, binary
                   cls
clus                 0  1
  APOBEC4 MUTATED    6  3
  APOBEC4 WILD-TYPE 30 33
[1] "tbl2"
                   cls
clus                [,1] [,2]
  APOBEC4 MUTATED      6    3
  APOBEC4 WILD-TYPE   30   33
        clus
vv       APOBEC4 MUTATED APOBEC4 WILD-TYPE
  FEMALE               6                30
  MALE                 3                33
                   vv
clus                PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  APOBEC4 MUTATED                                     8
  APOBEC4 WILD-TYPE                                  57
                   vv
clus                PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  APOBEC4 MUTATED                                       0
  APOBEC4 WILD-TYPE                                     4
                   vv
clus                PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  APOBEC4 MUTATED                                                  1
  APOBEC4 WILD-TYPE                                                1
D62V8, multiclass
                                                  clus
vv                                                 APOBEC4 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                            8
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                          0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA               1
                                                  clus
vv                                                 APOBEC4 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                             57
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                            4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                 1
D62V9, continuous
[1] "Remove cluster labels:" "APOBEC4 MUTATED"       
clus
  APOBEC4 MUTATED APOBEC4 WILD-TYPE 
                1                21 
       TCGA-F2-6880        TCGA-FB-A4P5        TCGA-FB-A4P6        TCGA-FB-A5VM 
"APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" 
       TCGA-FB-A78T        TCGA-FB-A7DR        TCGA-H6-8124        TCGA-H6-A45N 
"APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" 
       TCGA-H8-A6C1        TCGA-IB-7649        TCGA-IB-7651        TCGA-IB-7885 
"APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" 
       TCGA-IB-7886        TCGA-IB-7887        TCGA-IB-7891        TCGA-IB-8126 
"APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" 
       TCGA-IB-8127        TCGA-IB-A5SS        TCGA-IB-A6UG        TCGA-LB-A7SX 
"APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" 
       TCGA-OE-A75W 
"APOBEC4 WILD-TYPE" 
D62V10, continuous
[1] "Remove cluster labels:" "APOBEC4 MUTATED"       
clus
  APOBEC4 MUTATED APOBEC4 WILD-TYPE 
                1                18 
       TCGA-FB-A4P5        TCGA-FB-A4P6        TCGA-FB-A5VM        TCGA-FB-A78T 
"APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" 
       TCGA-FB-A7DR        TCGA-H6-8124        TCGA-H8-A6C1        TCGA-IB-7649 
"APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" 
       TCGA-IB-7651        TCGA-IB-7885        TCGA-IB-7886        TCGA-IB-7891 
"APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" 
       TCGA-IB-8126        TCGA-IB-8127        TCGA-IB-A5SS        TCGA-IB-A6UG 
"APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" 
       TCGA-LB-A7SX        TCGA-OE-A75W 
"APOBEC4 WILD-TYPE" "APOBEC4 WILD-TYPE" 
                   vv
clus                R0 R1 RX
  APOBEC4 MUTATED    3  6  0
  APOBEC4 WILD-TYPE 39 18  2
D62V11, multiclass
    clus
vv   APOBEC4 MUTATED APOBEC4 WILD-TYPE
  R0               3                39
  R1               6                18
  RX               0                 2
D62V12, continuous

Clustering(63) Variable = MED15 MUTATION ANALYSIS
D63V1, survival
                 sevent
clus2              0  1
  MED15 MUTATED   14  8
  MED15 WILD-TYPE 26 21
  MED15 MUTATED MED15 WILD-TYPE 
             22              47 
  MED15 MUTATED MED15 WILD-TYPE 
              8              21 
$`MED15 MUTATED`
TCGA-F2-6880 TCGA-F2-7276 TCGA-FB-A4P5 TCGA-FB-A78T TCGA-H6-8124 TCGA-HZ-7289 
        9.70         7.10         0.13         0.03        12.89         7.89 
TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-8002 TCGA-HZ-8003 
        0.66         0.13         0.26        12.13         0.79         0.69 
TCGA-HZ-8636 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-IB-7651 TCGA-IB-7888 
        0.16         0.76         0.95         6.38        19.82        43.79 
TCGA-IB-7890 TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-A5SS 
       19.66         3.85        15.98        15.12 

$`MED15 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-7273 TCGA-F2-A44G TCGA-F2-A44H TCGA-FB-A4P6 TCGA-FB-A545 
       10.98        11.84         5.03        19.27        11.93        12.66 
TCGA-FB-A5VM TCGA-FB-A7DR TCGA-FZ-5920 TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-A45N 
        2.47         5.46         2.01        36.20        20.81         7.66 
TCGA-H8-A6C1 TCGA-HZ-7918 TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8005 
       13.02         0.92        11.87         0.26         0.62         3.95 
TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8638 TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7645 
        0.92         0.53         2.99         1.51        11.41        49.38 
TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7886 
        4.77        21.90        15.35        15.65        27.98         4.04 
TCGA-IB-7887 TCGA-IB-7889 TCGA-IB-7891 TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO 
        3.62        15.81        16.04         0.56        17.16        10.82 
TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W 
        9.86         7.20         0.26         1.35         4.18         3.62 
TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
        8.12        13.68        16.80        14.14        18.67 

  MED15 MUTATED MED15 WILD-TYPE 
           0.03            0.26 
  MED15 MUTATED MED15 WILD-TYPE 
          43.79           49.38 
  MED15 MUTATED MED15 WILD-TYPE 
          5.115           9.860 
[1] "0.0 - 43.8 (5.1)" "0.3 - 49.4 (9.9)"
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"MED15 WILD-TYPE"   "MED15 MUTATED" "MED15 WILD-TYPE"   "MED15 MUTATED" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"MED15 WILD-TYPE" "MED15 WILD-TYPE"   "MED15 MUTATED" "MED15 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"MED15 WILD-TYPE" "MED15 WILD-TYPE"   "MED15 MUTATED" "MED15 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"MED15 WILD-TYPE" "MED15 WILD-TYPE" "MED15 WILD-TYPE"   "MED15 MUTATED" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"MED15 WILD-TYPE" "MED15 WILD-TYPE"   "MED15 MUTATED" "MED15 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
  "MED15 MUTATED"   "MED15 MUTATED"   "MED15 MUTATED"   "MED15 MUTATED" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"MED15 WILD-TYPE" "MED15 WILD-TYPE" "MED15 WILD-TYPE"   "MED15 MUTATED" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
  "MED15 MUTATED" "MED15 WILD-TYPE" "MED15 WILD-TYPE" "MED15 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
  "MED15 MUTATED" "MED15 WILD-TYPE"   "MED15 MUTATED"   "MED15 MUTATED" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
  "MED15 MUTATED" "MED15 WILD-TYPE" "MED15 WILD-TYPE" "MED15 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"MED15 WILD-TYPE" "MED15 WILD-TYPE" "MED15 WILD-TYPE"   "MED15 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"MED15 WILD-TYPE" "MED15 WILD-TYPE" "MED15 WILD-TYPE" "MED15 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
  "MED15 MUTATED" "MED15 WILD-TYPE"   "MED15 MUTATED" "MED15 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
  "MED15 MUTATED"   "MED15 MUTATED" "MED15 WILD-TYPE" "MED15 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"MED15 WILD-TYPE" "MED15 WILD-TYPE" "MED15 WILD-TYPE"   "MED15 MUTATED" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"MED15 WILD-TYPE" "MED15 WILD-TYPE" "MED15 WILD-TYPE" "MED15 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"MED15 WILD-TYPE" "MED15 WILD-TYPE" "MED15 WILD-TYPE" "MED15 WILD-TYPE" 
     TCGA-US-A77J 
"MED15 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"MED15 WILD-TYPE"   "MED15 MUTATED" "MED15 WILD-TYPE"   "MED15 MUTATED" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"MED15 WILD-TYPE" "MED15 WILD-TYPE"   "MED15 MUTATED" "MED15 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"MED15 WILD-TYPE" "MED15 WILD-TYPE"   "MED15 MUTATED" "MED15 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"MED15 WILD-TYPE" "MED15 WILD-TYPE" "MED15 WILD-TYPE"   "MED15 MUTATED" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"MED15 WILD-TYPE" "MED15 WILD-TYPE"   "MED15 MUTATED" "MED15 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
  "MED15 MUTATED"   "MED15 MUTATED"   "MED15 MUTATED"   "MED15 MUTATED" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"MED15 WILD-TYPE" "MED15 WILD-TYPE" "MED15 WILD-TYPE"   "MED15 MUTATED" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
  "MED15 MUTATED" "MED15 WILD-TYPE" "MED15 WILD-TYPE" "MED15 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
  "MED15 MUTATED" "MED15 WILD-TYPE"   "MED15 MUTATED"   "MED15 MUTATED" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
  "MED15 MUTATED" "MED15 WILD-TYPE" "MED15 WILD-TYPE" "MED15 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"MED15 WILD-TYPE" "MED15 WILD-TYPE" "MED15 WILD-TYPE"   "MED15 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"MED15 WILD-TYPE" "MED15 WILD-TYPE" "MED15 WILD-TYPE" "MED15 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
  "MED15 MUTATED" "MED15 WILD-TYPE"   "MED15 MUTATED" "MED15 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
  "MED15 MUTATED"   "MED15 MUTATED" "MED15 WILD-TYPE" "MED15 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"MED15 WILD-TYPE" "MED15 WILD-TYPE" "MED15 WILD-TYPE"   "MED15 MUTATED" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"MED15 WILD-TYPE" "MED15 WILD-TYPE" "MED15 WILD-TYPE" "MED15 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"MED15 WILD-TYPE" "MED15 WILD-TYPE" "MED15 WILD-TYPE" "MED15 WILD-TYPE" 
     TCGA-US-A77J 
"MED15 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"MED15 WILD-TYPE"   "MED15 MUTATED" "MED15 WILD-TYPE"   "MED15 MUTATED" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"MED15 WILD-TYPE" "MED15 WILD-TYPE"   "MED15 MUTATED" "MED15 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"MED15 WILD-TYPE" "MED15 WILD-TYPE"   "MED15 MUTATED" "MED15 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"MED15 WILD-TYPE" "MED15 WILD-TYPE" "MED15 WILD-TYPE"   "MED15 MUTATED" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"MED15 WILD-TYPE" "MED15 WILD-TYPE"   "MED15 MUTATED" "MED15 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
  "MED15 MUTATED"   "MED15 MUTATED"   "MED15 MUTATED"   "MED15 MUTATED" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"MED15 WILD-TYPE" "MED15 WILD-TYPE" "MED15 WILD-TYPE"   "MED15 MUTATED" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
  "MED15 MUTATED" "MED15 WILD-TYPE" "MED15 WILD-TYPE" "MED15 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
  "MED15 MUTATED" "MED15 WILD-TYPE"   "MED15 MUTATED"   "MED15 MUTATED" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
  "MED15 MUTATED" "MED15 WILD-TYPE" "MED15 WILD-TYPE" "MED15 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"MED15 WILD-TYPE" "MED15 WILD-TYPE" "MED15 WILD-TYPE"   "MED15 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"MED15 WILD-TYPE" "MED15 WILD-TYPE" "MED15 WILD-TYPE" "MED15 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
  "MED15 MUTATED" "MED15 WILD-TYPE"   "MED15 MUTATED" "MED15 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
  "MED15 MUTATED"   "MED15 MUTATED" "MED15 WILD-TYPE" "MED15 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"MED15 WILD-TYPE" "MED15 WILD-TYPE" "MED15 WILD-TYPE"   "MED15 MUTATED" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"MED15 WILD-TYPE" "MED15 WILD-TYPE" "MED15 WILD-TYPE" "MED15 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"MED15 WILD-TYPE" "MED15 WILD-TYPE" "MED15 WILD-TYPE" "MED15 WILD-TYPE" 
     TCGA-US-A77J 
"MED15 WILD-TYPE" 
[1] "hr=" "1.1"
D63V2, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  MED15 MUTATED          0        1         4        16         0        1
  MED15 WILD-TYPE        1        3         7        35         2        2
D63V3, multiclass
                 vv
clus              T1+T2 T3+T4
  MED15 MUTATED       2    20
  MED15 WILD-TYPE     4    46
D63V4, multiclass
       clus
vv      MED15 MUTATED MED15 WILD-TYPE
  T1+T2             2               4
  T3+T4            20              46
D63V5, binary
                 cls
clus               0  1
  MED15 MUTATED    6 16
  MED15 WILD-TYPE 11 38
[1] "tbl2"
                 cls
clus              [,1] [,2]
  MED15 MUTATED      6   16
  MED15 WILD-TYPE   11   38
   clus
vv  MED15 MUTATED MED15 WILD-TYPE
  0             6              11
  1            16              38
                 vv
clus              M0 M1 MX
  MED15 MUTATED   11  1 10
  MED15 WILD-TYPE 28  2 20
D63V6, multiclass
    clus
vv   MED15 MUTATED MED15 WILD-TYPE
  M0            11              28
  M1             1               2
  MX            10              20
D63V7, binary
                 cls
clus               0  1
  MED15 MUTATED   14  8
  MED15 WILD-TYPE 22 28
[1] "tbl2"
                 cls
clus              [,1] [,2]
  MED15 MUTATED     14    8
  MED15 WILD-TYPE   22   28
        clus
vv       MED15 MUTATED MED15 WILD-TYPE
  FEMALE            14              22
  MALE               8              28
                 vv
clus              PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  MED15 MUTATED                                    21
  MED15 WILD-TYPE                                  44
                 vv
clus              PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  MED15 MUTATED                                       1
  MED15 WILD-TYPE                                     3
                 vv
clus              PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  MED15 MUTATED                                                  0
  MED15 WILD-TYPE                                                2
D63V8, multiclass
                                                  clus
vv                                                 MED15 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                         21
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                        1
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA             0
                                                  clus
vv                                                 MED15 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                           44
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                          3
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA               2
D63V9, continuous
D63V10, continuous
                 vv
clus              R0 R1 RX
  MED15 MUTATED   17  4  1
  MED15 WILD-TYPE 25 20  1
D63V11, multiclass
    clus
vv   MED15 MUTATED MED15 WILD-TYPE
  R0            17              25
  R1             4              20
  RX             1               1
D63V12, continuous

Clustering(64) Variable = MAML3 MUTATION ANALYSIS
D64V1, survival
                 sevent
clus2              0  1
  MAML3 MUTATED    5  7
  MAML3 WILD-TYPE 35 22
  MAML3 MUTATED MAML3 WILD-TYPE 
             12              57 
  MAML3 MUTATED MAML3 WILD-TYPE 
              7              22 
$`MAML3 MUTATED`
TCGA-F2-6879 TCGA-F2-7273 TCGA-F2-7276 TCGA-HZ-7922 TCGA-HZ-8001 TCGA-HZ-8636 
       10.98        11.84         7.10         0.13         0.62         0.16 
TCGA-HZ-8638 TCGA-IB-7646 TCGA-IB-7651 TCGA-IB-7886 TCGA-IB-7888 TCGA-IB-A5SO 
        2.99         4.77        19.82         4.04        43.79        10.82 

$`MAML3 WILD-TYPE`
TCGA-F2-6880 TCGA-F2-A44G TCGA-F2-A44H TCGA-FB-A4P5 TCGA-FB-A4P6 TCGA-FB-A545 
        9.70         5.03        19.27         0.13        11.93        12.66 
TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR TCGA-FZ-5920 TCGA-FZ-5922 TCGA-FZ-5923 
        2.47         0.03         5.46         2.01        36.20        20.81 
TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-7919 
       12.89         7.66        13.02         7.89         0.92         0.66 
TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8002 TCGA-HZ-8003 
        0.26        12.13        11.87         0.26         0.79         0.69 
TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH 
        3.95         0.92         0.53         0.76         0.95         6.38 
TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7652 
        1.51        11.41        49.38        21.90        15.35        15.65 
TCGA-IB-7885 TCGA-IB-7887 TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-7893 
       27.98         3.62        15.81        19.66        16.04         3.85 
TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS 
       15.98         0.56        17.16         9.86         7.20        15.12 
TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W TCGA-PZ-A5RE TCGA-Q3-A5QY 
        0.26         1.35         4.18         3.62         8.12        13.68 
TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
       16.80        14.14        18.67 

  MAML3 MUTATED MAML3 WILD-TYPE 
           0.13            0.03 
  MAML3 MUTATED MAML3 WILD-TYPE 
          43.79           49.38 
  MAML3 MUTATED MAML3 WILD-TYPE 
          5.935           7.890 
[1] "0.1 - 43.8 (5.9)" "0.0 - 49.4 (7.9)"
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
  "MAML3 MUTATED" "MAML3 WILD-TYPE"   "MAML3 MUTATED"   "MAML3 MUTATED" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"MAML3 WILD-TYPE" "MAML3 WILD-TYPE" "MAML3 WILD-TYPE" "MAML3 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"MAML3 WILD-TYPE" "MAML3 WILD-TYPE" "MAML3 WILD-TYPE" "MAML3 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"MAML3 WILD-TYPE" "MAML3 WILD-TYPE" "MAML3 WILD-TYPE" "MAML3 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"MAML3 WILD-TYPE" "MAML3 WILD-TYPE" "MAML3 WILD-TYPE" "MAML3 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"MAML3 WILD-TYPE"   "MAML3 MUTATED" "MAML3 WILD-TYPE" "MAML3 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"MAML3 WILD-TYPE" "MAML3 WILD-TYPE"   "MAML3 MUTATED" "MAML3 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"MAML3 WILD-TYPE" "MAML3 WILD-TYPE" "MAML3 WILD-TYPE" "MAML3 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
  "MAML3 MUTATED"   "MAML3 MUTATED" "MAML3 WILD-TYPE" "MAML3 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"MAML3 WILD-TYPE" "MAML3 WILD-TYPE" "MAML3 WILD-TYPE" "MAML3 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
  "MAML3 MUTATED" "MAML3 WILD-TYPE" "MAML3 WILD-TYPE"   "MAML3 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"MAML3 WILD-TYPE" "MAML3 WILD-TYPE"   "MAML3 MUTATED" "MAML3 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
  "MAML3 MUTATED" "MAML3 WILD-TYPE" "MAML3 WILD-TYPE" "MAML3 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"MAML3 WILD-TYPE" "MAML3 WILD-TYPE" "MAML3 WILD-TYPE" "MAML3 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
  "MAML3 MUTATED" "MAML3 WILD-TYPE" "MAML3 WILD-TYPE" "MAML3 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"MAML3 WILD-TYPE" "MAML3 WILD-TYPE" "MAML3 WILD-TYPE" "MAML3 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"MAML3 WILD-TYPE" "MAML3 WILD-TYPE" "MAML3 WILD-TYPE" "MAML3 WILD-TYPE" 
     TCGA-US-A77J 
"MAML3 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
  "MAML3 MUTATED" "MAML3 WILD-TYPE"   "MAML3 MUTATED"   "MAML3 MUTATED" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"MAML3 WILD-TYPE" "MAML3 WILD-TYPE" "MAML3 WILD-TYPE" "MAML3 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"MAML3 WILD-TYPE" "MAML3 WILD-TYPE" "MAML3 WILD-TYPE" "MAML3 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"MAML3 WILD-TYPE" "MAML3 WILD-TYPE" "MAML3 WILD-TYPE" "MAML3 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"MAML3 WILD-TYPE" "MAML3 WILD-TYPE" "MAML3 WILD-TYPE" "MAML3 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"MAML3 WILD-TYPE"   "MAML3 MUTATED" "MAML3 WILD-TYPE" "MAML3 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"MAML3 WILD-TYPE" "MAML3 WILD-TYPE"   "MAML3 MUTATED" "MAML3 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"MAML3 WILD-TYPE" "MAML3 WILD-TYPE" "MAML3 WILD-TYPE" "MAML3 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
  "MAML3 MUTATED"   "MAML3 MUTATED" "MAML3 WILD-TYPE" "MAML3 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"MAML3 WILD-TYPE" "MAML3 WILD-TYPE" "MAML3 WILD-TYPE" "MAML3 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
  "MAML3 MUTATED" "MAML3 WILD-TYPE" "MAML3 WILD-TYPE"   "MAML3 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"MAML3 WILD-TYPE" "MAML3 WILD-TYPE"   "MAML3 MUTATED" "MAML3 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
  "MAML3 MUTATED" "MAML3 WILD-TYPE" "MAML3 WILD-TYPE" "MAML3 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"MAML3 WILD-TYPE" "MAML3 WILD-TYPE" "MAML3 WILD-TYPE" "MAML3 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
  "MAML3 MUTATED" "MAML3 WILD-TYPE" "MAML3 WILD-TYPE" "MAML3 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"MAML3 WILD-TYPE" "MAML3 WILD-TYPE" "MAML3 WILD-TYPE" "MAML3 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"MAML3 WILD-TYPE" "MAML3 WILD-TYPE" "MAML3 WILD-TYPE" "MAML3 WILD-TYPE" 
     TCGA-US-A77J 
"MAML3 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
  "MAML3 MUTATED" "MAML3 WILD-TYPE"   "MAML3 MUTATED"   "MAML3 MUTATED" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"MAML3 WILD-TYPE" "MAML3 WILD-TYPE" "MAML3 WILD-TYPE" "MAML3 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"MAML3 WILD-TYPE" "MAML3 WILD-TYPE" "MAML3 WILD-TYPE" "MAML3 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"MAML3 WILD-TYPE" "MAML3 WILD-TYPE" "MAML3 WILD-TYPE" "MAML3 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"MAML3 WILD-TYPE" "MAML3 WILD-TYPE" "MAML3 WILD-TYPE" "MAML3 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"MAML3 WILD-TYPE"   "MAML3 MUTATED" "MAML3 WILD-TYPE" "MAML3 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"MAML3 WILD-TYPE" "MAML3 WILD-TYPE"   "MAML3 MUTATED" "MAML3 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"MAML3 WILD-TYPE" "MAML3 WILD-TYPE" "MAML3 WILD-TYPE" "MAML3 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
  "MAML3 MUTATED"   "MAML3 MUTATED" "MAML3 WILD-TYPE" "MAML3 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"MAML3 WILD-TYPE" "MAML3 WILD-TYPE" "MAML3 WILD-TYPE" "MAML3 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
  "MAML3 MUTATED" "MAML3 WILD-TYPE" "MAML3 WILD-TYPE"   "MAML3 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"MAML3 WILD-TYPE" "MAML3 WILD-TYPE"   "MAML3 MUTATED" "MAML3 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
  "MAML3 MUTATED" "MAML3 WILD-TYPE" "MAML3 WILD-TYPE" "MAML3 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"MAML3 WILD-TYPE" "MAML3 WILD-TYPE" "MAML3 WILD-TYPE" "MAML3 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
  "MAML3 MUTATED" "MAML3 WILD-TYPE" "MAML3 WILD-TYPE" "MAML3 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"MAML3 WILD-TYPE" "MAML3 WILD-TYPE" "MAML3 WILD-TYPE" "MAML3 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"MAML3 WILD-TYPE" "MAML3 WILD-TYPE" "MAML3 WILD-TYPE" "MAML3 WILD-TYPE" 
     TCGA-US-A77J 
"MAML3 WILD-TYPE" 
[1] "hr=" "1.5"
D64V2, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  MAML3 MUTATED          1        0         1         8         1        1
  MAML3 WILD-TYPE        0        4        10        43         1        2
D64V3, multiclass
                 vv
clus              T1+T2 T3+T4
  MAML3 MUTATED       1    11
  MAML3 WILD-TYPE     5    55
D64V4, multiclass
       clus
vv      MAML3 MUTATED MAML3 WILD-TYPE
  T1+T2             1               5
  T3+T4            11              55
D64V5, binary
                 cls
clus               0  1
  MAML3 MUTATED    4  8
  MAML3 WILD-TYPE 13 46
[1] "tbl2"
                 cls
clus              [,1] [,2]
  MAML3 MUTATED      4    8
  MAML3 WILD-TYPE   13   46
   clus
vv  MAML3 MUTATED MAML3 WILD-TYPE
  0             4              13
  1             8              46
                 vv
clus              M0 M1 MX
  MAML3 MUTATED    8  1  3
  MAML3 WILD-TYPE 31  2 27
D64V6, multiclass
    clus
vv   MAML3 MUTATED MAML3 WILD-TYPE
  M0             8              31
  M1             1               2
  MX             3              27
D64V7, binary
                 cls
clus               0  1
  MAML3 MUTATED    5  7
  MAML3 WILD-TYPE 31 29
[1] "tbl2"
                 cls
clus              [,1] [,2]
  MAML3 MUTATED      5    7
  MAML3 WILD-TYPE   31   29
        clus
vv       MAML3 MUTATED MAML3 WILD-TYPE
  FEMALE             5              31
  MALE               7              29
                 vv
clus              PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  MAML3 MUTATED                                    10
  MAML3 WILD-TYPE                                  55
                 vv
clus              PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  MAML3 MUTATED                                       0
  MAML3 WILD-TYPE                                     4
                 vv
clus              PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  MAML3 MUTATED                                                  1
  MAML3 WILD-TYPE                                                1
D64V8, multiclass
                                                  clus
vv                                                 MAML3 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                         10
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                        0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA             1
                                                  clus
vv                                                 MAML3 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                           55
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                          4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA               1
D64V9, continuous
[1] "Remove cluster labels:" "MAML3 MUTATED"         
clus
  MAML3 MUTATED MAML3 WILD-TYPE 
              2              20 
     TCGA-F2-6880      TCGA-FB-A4P5      TCGA-FB-A4P6      TCGA-FB-A5VM 
"MAML3 WILD-TYPE" "MAML3 WILD-TYPE" "MAML3 WILD-TYPE" "MAML3 WILD-TYPE" 
     TCGA-FB-A78T      TCGA-FB-A7DR      TCGA-H6-8124      TCGA-H6-A45N 
"MAML3 WILD-TYPE" "MAML3 WILD-TYPE" "MAML3 WILD-TYPE" "MAML3 WILD-TYPE" 
     TCGA-H8-A6C1      TCGA-IB-7644      TCGA-IB-7649      TCGA-IB-7885 
"MAML3 WILD-TYPE" "MAML3 WILD-TYPE" "MAML3 WILD-TYPE" "MAML3 WILD-TYPE" 
     TCGA-IB-7887      TCGA-IB-7891      TCGA-IB-8126      TCGA-IB-8127 
"MAML3 WILD-TYPE" "MAML3 WILD-TYPE" "MAML3 WILD-TYPE" "MAML3 WILD-TYPE" 
     TCGA-IB-A5SS      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"MAML3 WILD-TYPE" "MAML3 WILD-TYPE" "MAML3 WILD-TYPE" "MAML3 WILD-TYPE" 
D64V10, continuous
[1] "Remove cluster labels:" "MAML3 MUTATED"         
clus
  MAML3 MUTATED MAML3 WILD-TYPE 
              2              17 
     TCGA-FB-A4P5      TCGA-FB-A4P6      TCGA-FB-A5VM      TCGA-FB-A78T 
"MAML3 WILD-TYPE" "MAML3 WILD-TYPE" "MAML3 WILD-TYPE" "MAML3 WILD-TYPE" 
     TCGA-FB-A7DR      TCGA-H6-8124      TCGA-H8-A6C1      TCGA-IB-7644 
"MAML3 WILD-TYPE" "MAML3 WILD-TYPE" "MAML3 WILD-TYPE" "MAML3 WILD-TYPE" 
     TCGA-IB-7649      TCGA-IB-7885      TCGA-IB-7891      TCGA-IB-8126 
"MAML3 WILD-TYPE" "MAML3 WILD-TYPE" "MAML3 WILD-TYPE" "MAML3 WILD-TYPE" 
     TCGA-IB-8127      TCGA-IB-A5SS      TCGA-IB-A6UG      TCGA-LB-A7SX 
"MAML3 WILD-TYPE" "MAML3 WILD-TYPE" "MAML3 WILD-TYPE" "MAML3 WILD-TYPE" 
     TCGA-OE-A75W 
"MAML3 WILD-TYPE" 
                 vv
clus              R0 R1 RX
  MAML3 MUTATED    8  4  0
  MAML3 WILD-TYPE 34 20  2
D64V11, multiclass
    clus
vv   MAML3 MUTATED MAML3 WILD-TYPE
  R0             8              34
  R1             4              20
  RX             0               2
D64V12, continuous

Clustering(65) Variable = SULT1C3 MUTATION ANALYSIS
D65V1, survival
                   sevent
clus2                0  1
  SULT1C3 MUTATED    0  4
  SULT1C3 WILD-TYPE 40 25
  SULT1C3 MUTATED SULT1C3 WILD-TYPE 
                4                65 
  SULT1C3 MUTATED SULT1C3 WILD-TYPE 
                4                25 
$`SULT1C3 MUTATED`
TCGA-F2-7276 TCGA-H6-A45N TCGA-IB-7886 TCGA-IB-7889 
        7.10         7.66         4.04        15.81 

$`SULT1C3 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-A44G TCGA-F2-A44H TCGA-FB-A4P5 
       10.98         9.70        11.84         5.03        19.27         0.13 
TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR TCGA-FZ-5920 
       11.93        12.66         2.47         0.03         5.46         2.01 
TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 TCGA-H8-A6C1 TCGA-HZ-7289 TCGA-HZ-7918 
       36.20        20.81        12.89        13.02         7.89         0.92 
TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 
        0.66         0.13         0.26        12.13        11.87         0.26 
TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 
        0.62         0.79         0.69         3.95         0.92         0.53 
TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK 
        0.16         2.99         0.76         0.95         6.38         1.51 
TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7651 
       11.41        49.38         4.77        21.90        15.35        19.82 
TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7890 TCGA-IB-7891 
       15.65        27.98         3.62        43.79        19.66        16.04 
TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP 
        3.85        15.98         0.56        17.16        10.82         9.86 
TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W 
        7.20        15.12         0.26         1.35         4.18         3.62 
TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
        8.12        13.68        16.80        14.14        18.67 

  SULT1C3 MUTATED SULT1C3 WILD-TYPE 
             4.04              0.03 
  SULT1C3 MUTATED SULT1C3 WILD-TYPE 
            15.81             49.38 
  SULT1C3 MUTATED SULT1C3 WILD-TYPE 
             7.38              7.89 
[1] "4.0 - 15.8 (7.4)" "0.0 - 49.4 (7.9)"
       TCGA-F2-6879        TCGA-F2-6880        TCGA-F2-7273        TCGA-F2-7276 
"SULT1C3 WILD-TYPE" "SULT1C3 WILD-TYPE" "SULT1C3 WILD-TYPE"   "SULT1C3 MUTATED" 
       TCGA-F2-A44G        TCGA-F2-A44H        TCGA-FB-A4P5        TCGA-FB-A4P6 
"SULT1C3 WILD-TYPE" "SULT1C3 WILD-TYPE" "SULT1C3 WILD-TYPE" "SULT1C3 WILD-TYPE" 
       TCGA-FB-A545        TCGA-FB-A5VM        TCGA-FB-A78T        TCGA-FB-A7DR 
"SULT1C3 WILD-TYPE" "SULT1C3 WILD-TYPE" "SULT1C3 WILD-TYPE" "SULT1C3 WILD-TYPE" 
       TCGA-FZ-5920        TCGA-FZ-5922        TCGA-FZ-5923        TCGA-H6-8124 
"SULT1C3 WILD-TYPE" "SULT1C3 WILD-TYPE" "SULT1C3 WILD-TYPE" "SULT1C3 WILD-TYPE" 
       TCGA-H6-A45N        TCGA-H8-A6C1        TCGA-HZ-7289        TCGA-HZ-7918 
  "SULT1C3 MUTATED" "SULT1C3 WILD-TYPE" "SULT1C3 WILD-TYPE" "SULT1C3 WILD-TYPE" 
       TCGA-HZ-7919        TCGA-HZ-7922        TCGA-HZ-7923        TCGA-HZ-7924 
"SULT1C3 WILD-TYPE" "SULT1C3 WILD-TYPE" "SULT1C3 WILD-TYPE" "SULT1C3 WILD-TYPE" 
       TCGA-HZ-7925        TCGA-HZ-7926        TCGA-HZ-8001        TCGA-HZ-8002 
"SULT1C3 WILD-TYPE" "SULT1C3 WILD-TYPE" "SULT1C3 WILD-TYPE" "SULT1C3 WILD-TYPE" 
       TCGA-HZ-8003        TCGA-HZ-8005        TCGA-HZ-8315        TCGA-HZ-8317 
"SULT1C3 WILD-TYPE" "SULT1C3 WILD-TYPE" "SULT1C3 WILD-TYPE" "SULT1C3 WILD-TYPE" 
       TCGA-HZ-8636        TCGA-HZ-8638        TCGA-HZ-A49G        TCGA-HZ-A49H 
"SULT1C3 WILD-TYPE" "SULT1C3 WILD-TYPE" "SULT1C3 WILD-TYPE" "SULT1C3 WILD-TYPE" 
       TCGA-HZ-A4BH        TCGA-HZ-A4BK        TCGA-IB-7644        TCGA-IB-7645 
"SULT1C3 WILD-TYPE" "SULT1C3 WILD-TYPE" "SULT1C3 WILD-TYPE" "SULT1C3 WILD-TYPE" 
       TCGA-IB-7646        TCGA-IB-7647        TCGA-IB-7649        TCGA-IB-7651 
"SULT1C3 WILD-TYPE" "SULT1C3 WILD-TYPE" "SULT1C3 WILD-TYPE" "SULT1C3 WILD-TYPE" 
       TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-7886        TCGA-IB-7887 
"SULT1C3 WILD-TYPE" "SULT1C3 WILD-TYPE"   "SULT1C3 MUTATED" "SULT1C3 WILD-TYPE" 
       TCGA-IB-7888        TCGA-IB-7889        TCGA-IB-7890        TCGA-IB-7891 
"SULT1C3 WILD-TYPE"   "SULT1C3 MUTATED" "SULT1C3 WILD-TYPE" "SULT1C3 WILD-TYPE" 
       TCGA-IB-7893        TCGA-IB-7897        TCGA-IB-8126        TCGA-IB-8127 
"SULT1C3 WILD-TYPE" "SULT1C3 WILD-TYPE" "SULT1C3 WILD-TYPE" "SULT1C3 WILD-TYPE" 
       TCGA-IB-A5SO        TCGA-IB-A5SP        TCGA-IB-A5SQ        TCGA-IB-A5SS 
"SULT1C3 WILD-TYPE" "SULT1C3 WILD-TYPE" "SULT1C3 WILD-TYPE" "SULT1C3 WILD-TYPE" 
       TCGA-IB-A5ST        TCGA-IB-A6UG        TCGA-LB-A7SX        TCGA-OE-A75W 
"SULT1C3 WILD-TYPE" "SULT1C3 WILD-TYPE" "SULT1C3 WILD-TYPE" "SULT1C3 WILD-TYPE" 
       TCGA-PZ-A5RE        TCGA-Q3-A5QY        TCGA-US-A779        TCGA-US-A77E 
"SULT1C3 WILD-TYPE" "SULT1C3 WILD-TYPE" "SULT1C3 WILD-TYPE" "SULT1C3 WILD-TYPE" 
       TCGA-US-A77J 
"SULT1C3 WILD-TYPE" 
       TCGA-F2-6879        TCGA-F2-6880        TCGA-F2-7273        TCGA-F2-7276 
"SULT1C3 WILD-TYPE" "SULT1C3 WILD-TYPE" "SULT1C3 WILD-TYPE"   "SULT1C3 MUTATED" 
       TCGA-F2-A44G        TCGA-F2-A44H        TCGA-FB-A4P5        TCGA-FB-A4P6 
"SULT1C3 WILD-TYPE" "SULT1C3 WILD-TYPE" "SULT1C3 WILD-TYPE" "SULT1C3 WILD-TYPE" 
       TCGA-FB-A545        TCGA-FB-A5VM        TCGA-FB-A78T        TCGA-FB-A7DR 
"SULT1C3 WILD-TYPE" "SULT1C3 WILD-TYPE" "SULT1C3 WILD-TYPE" "SULT1C3 WILD-TYPE" 
       TCGA-FZ-5920        TCGA-FZ-5922        TCGA-FZ-5923        TCGA-H6-8124 
"SULT1C3 WILD-TYPE" "SULT1C3 WILD-TYPE" "SULT1C3 WILD-TYPE" "SULT1C3 WILD-TYPE" 
       TCGA-H6-A45N        TCGA-H8-A6C1        TCGA-HZ-7289        TCGA-HZ-7918 
  "SULT1C3 MUTATED" "SULT1C3 WILD-TYPE" "SULT1C3 WILD-TYPE" "SULT1C3 WILD-TYPE" 
       TCGA-HZ-7919        TCGA-HZ-7922        TCGA-HZ-7923        TCGA-HZ-7924 
"SULT1C3 WILD-TYPE" "SULT1C3 WILD-TYPE" "SULT1C3 WILD-TYPE" "SULT1C3 WILD-TYPE" 
       TCGA-HZ-7925        TCGA-HZ-7926        TCGA-HZ-8001        TCGA-HZ-8002 
"SULT1C3 WILD-TYPE" "SULT1C3 WILD-TYPE" "SULT1C3 WILD-TYPE" "SULT1C3 WILD-TYPE" 
       TCGA-HZ-8003        TCGA-HZ-8005        TCGA-HZ-8315        TCGA-HZ-8317 
"SULT1C3 WILD-TYPE" "SULT1C3 WILD-TYPE" "SULT1C3 WILD-TYPE" "SULT1C3 WILD-TYPE" 
       TCGA-HZ-8636        TCGA-HZ-8638        TCGA-HZ-A49G        TCGA-HZ-A49H 
"SULT1C3 WILD-TYPE" "SULT1C3 WILD-TYPE" "SULT1C3 WILD-TYPE" "SULT1C3 WILD-TYPE" 
       TCGA-HZ-A4BH        TCGA-HZ-A4BK        TCGA-IB-7644        TCGA-IB-7645 
"SULT1C3 WILD-TYPE" "SULT1C3 WILD-TYPE" "SULT1C3 WILD-TYPE" "SULT1C3 WILD-TYPE" 
       TCGA-IB-7646        TCGA-IB-7647        TCGA-IB-7649        TCGA-IB-7651 
"SULT1C3 WILD-TYPE" "SULT1C3 WILD-TYPE" "SULT1C3 WILD-TYPE" "SULT1C3 WILD-TYPE" 
       TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-7886        TCGA-IB-7887 
"SULT1C3 WILD-TYPE" "SULT1C3 WILD-TYPE"   "SULT1C3 MUTATED" "SULT1C3 WILD-TYPE" 
       TCGA-IB-7888        TCGA-IB-7889        TCGA-IB-7890        TCGA-IB-7891 
"SULT1C3 WILD-TYPE"   "SULT1C3 MUTATED" "SULT1C3 WILD-TYPE" "SULT1C3 WILD-TYPE" 
       TCGA-IB-7893        TCGA-IB-7897        TCGA-IB-8126        TCGA-IB-8127 
"SULT1C3 WILD-TYPE" "SULT1C3 WILD-TYPE" "SULT1C3 WILD-TYPE" "SULT1C3 WILD-TYPE" 
       TCGA-IB-A5SO        TCGA-IB-A5SP        TCGA-IB-A5SQ        TCGA-IB-A5SS 
"SULT1C3 WILD-TYPE" "SULT1C3 WILD-TYPE" "SULT1C3 WILD-TYPE" "SULT1C3 WILD-TYPE" 
       TCGA-IB-A5ST        TCGA-IB-A6UG        TCGA-LB-A7SX        TCGA-OE-A75W 
"SULT1C3 WILD-TYPE" "SULT1C3 WILD-TYPE" "SULT1C3 WILD-TYPE" "SULT1C3 WILD-TYPE" 
       TCGA-PZ-A5RE        TCGA-Q3-A5QY        TCGA-US-A779        TCGA-US-A77E 
"SULT1C3 WILD-TYPE" "SULT1C3 WILD-TYPE" "SULT1C3 WILD-TYPE" "SULT1C3 WILD-TYPE" 
       TCGA-US-A77J 
"SULT1C3 WILD-TYPE" 
       TCGA-F2-6879        TCGA-F2-6880        TCGA-F2-7273        TCGA-F2-7276 
"SULT1C3 WILD-TYPE" "SULT1C3 WILD-TYPE" "SULT1C3 WILD-TYPE"   "SULT1C3 MUTATED" 
       TCGA-F2-A44G        TCGA-F2-A44H        TCGA-FB-A4P5        TCGA-FB-A4P6 
"SULT1C3 WILD-TYPE" "SULT1C3 WILD-TYPE" "SULT1C3 WILD-TYPE" "SULT1C3 WILD-TYPE" 
       TCGA-FB-A545        TCGA-FB-A5VM        TCGA-FB-A78T        TCGA-FB-A7DR 
"SULT1C3 WILD-TYPE" "SULT1C3 WILD-TYPE" "SULT1C3 WILD-TYPE" "SULT1C3 WILD-TYPE" 
       TCGA-FZ-5920        TCGA-FZ-5922        TCGA-FZ-5923        TCGA-H6-8124 
"SULT1C3 WILD-TYPE" "SULT1C3 WILD-TYPE" "SULT1C3 WILD-TYPE" "SULT1C3 WILD-TYPE" 
       TCGA-H6-A45N        TCGA-H8-A6C1        TCGA-HZ-7289        TCGA-HZ-7918 
  "SULT1C3 MUTATED" "SULT1C3 WILD-TYPE" "SULT1C3 WILD-TYPE" "SULT1C3 WILD-TYPE" 
       TCGA-HZ-7919        TCGA-HZ-7922        TCGA-HZ-7923        TCGA-HZ-7924 
"SULT1C3 WILD-TYPE" "SULT1C3 WILD-TYPE" "SULT1C3 WILD-TYPE" "SULT1C3 WILD-TYPE" 
       TCGA-HZ-7925        TCGA-HZ-7926        TCGA-HZ-8001        TCGA-HZ-8002 
"SULT1C3 WILD-TYPE" "SULT1C3 WILD-TYPE" "SULT1C3 WILD-TYPE" "SULT1C3 WILD-TYPE" 
       TCGA-HZ-8003        TCGA-HZ-8005        TCGA-HZ-8315        TCGA-HZ-8317 
"SULT1C3 WILD-TYPE" "SULT1C3 WILD-TYPE" "SULT1C3 WILD-TYPE" "SULT1C3 WILD-TYPE" 
       TCGA-HZ-8636        TCGA-HZ-8638        TCGA-HZ-A49G        TCGA-HZ-A49H 
"SULT1C3 WILD-TYPE" "SULT1C3 WILD-TYPE" "SULT1C3 WILD-TYPE" "SULT1C3 WILD-TYPE" 
       TCGA-HZ-A4BH        TCGA-HZ-A4BK        TCGA-IB-7644        TCGA-IB-7645 
"SULT1C3 WILD-TYPE" "SULT1C3 WILD-TYPE" "SULT1C3 WILD-TYPE" "SULT1C3 WILD-TYPE" 
       TCGA-IB-7646        TCGA-IB-7647        TCGA-IB-7649        TCGA-IB-7651 
"SULT1C3 WILD-TYPE" "SULT1C3 WILD-TYPE" "SULT1C3 WILD-TYPE" "SULT1C3 WILD-TYPE" 
       TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-7886        TCGA-IB-7887 
"SULT1C3 WILD-TYPE" "SULT1C3 WILD-TYPE"   "SULT1C3 MUTATED" "SULT1C3 WILD-TYPE" 
       TCGA-IB-7888        TCGA-IB-7889        TCGA-IB-7890        TCGA-IB-7891 
"SULT1C3 WILD-TYPE"   "SULT1C3 MUTATED" "SULT1C3 WILD-TYPE" "SULT1C3 WILD-TYPE" 
       TCGA-IB-7893        TCGA-IB-7897        TCGA-IB-8126        TCGA-IB-8127 
"SULT1C3 WILD-TYPE" "SULT1C3 WILD-TYPE" "SULT1C3 WILD-TYPE" "SULT1C3 WILD-TYPE" 
       TCGA-IB-A5SO        TCGA-IB-A5SP        TCGA-IB-A5SQ        TCGA-IB-A5SS 
"SULT1C3 WILD-TYPE" "SULT1C3 WILD-TYPE" "SULT1C3 WILD-TYPE" "SULT1C3 WILD-TYPE" 
       TCGA-IB-A5ST        TCGA-IB-A6UG        TCGA-LB-A7SX        TCGA-OE-A75W 
"SULT1C3 WILD-TYPE" "SULT1C3 WILD-TYPE" "SULT1C3 WILD-TYPE" "SULT1C3 WILD-TYPE" 
       TCGA-PZ-A5RE        TCGA-Q3-A5QY        TCGA-US-A779        TCGA-US-A77E 
"SULT1C3 WILD-TYPE" "SULT1C3 WILD-TYPE" "SULT1C3 WILD-TYPE" "SULT1C3 WILD-TYPE" 
       TCGA-US-A77J 
"SULT1C3 WILD-TYPE" 
[1] "hr=" "3.8"
D65V2, continuous
                   vv
clus                STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  SULT1C3 MUTATED          0        0         0         4         0        0
  SULT1C3 WILD-TYPE        1        4        11        47         2        3
D65V3, multiclass
                   vv
clus                T1+T2 T3+T4
  SULT1C3 MUTATED       0     4
  SULT1C3 WILD-TYPE     6    62
D65V4, multiclass
       clus
vv      SULT1C3 MUTATED SULT1C3 WILD-TYPE
  T1+T2               0                 6
  T3+T4               4                62
D65V5, binary
                   cls
clus                 0  1
  SULT1C3 MUTATED    0  4
  SULT1C3 WILD-TYPE 17 50
[1] "tbl2"
                   cls
clus                [,1] [,2]
  SULT1C3 MUTATED      0    4
  SULT1C3 WILD-TYPE   17   50
   clus
vv  SULT1C3 MUTATED SULT1C3 WILD-TYPE
  0               0                17
  1               4                50
                   vv
clus                M0 M1 MX
  SULT1C3 MUTATED    3  0  1
  SULT1C3 WILD-TYPE 36  3 29
D65V6, multiclass
    clus
vv   SULT1C3 MUTATED SULT1C3 WILD-TYPE
  M0               3                36
  M1               0                 3
  MX               1                29
D65V7, binary
                   cls
clus                 0  1
  SULT1C3 MUTATED    2  2
  SULT1C3 WILD-TYPE 34 34
[1] "tbl2"
                   cls
clus                [,1] [,2]
  SULT1C3 MUTATED      2    2
  SULT1C3 WILD-TYPE   34   34
        clus
vv       SULT1C3 MUTATED SULT1C3 WILD-TYPE
  FEMALE               2                34
  MALE                 2                34
                   vv
clus                PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  SULT1C3 MUTATED                                     3
  SULT1C3 WILD-TYPE                                  62
                   vv
clus                PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  SULT1C3 MUTATED                                       1
  SULT1C3 WILD-TYPE                                     3
                   vv
clus                PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  SULT1C3 MUTATED                                                  0
  SULT1C3 WILD-TYPE                                                2
D65V8, multiclass
                                                  clus
vv                                                 SULT1C3 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                            3
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                          1
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA               0
                                                  clus
vv                                                 SULT1C3 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                             62
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                            3
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                 2
D65V9, continuous
[1] "Remove cluster labels:" "SULT1C3 MUTATED"       
clus
  SULT1C3 MUTATED SULT1C3 WILD-TYPE 
                2                20 
       TCGA-F2-6880        TCGA-FB-A4P5        TCGA-FB-A4P6        TCGA-FB-A5VM 
"SULT1C3 WILD-TYPE" "SULT1C3 WILD-TYPE" "SULT1C3 WILD-TYPE" "SULT1C3 WILD-TYPE" 
       TCGA-FB-A78T        TCGA-FB-A7DR        TCGA-H6-8124        TCGA-H8-A6C1 
"SULT1C3 WILD-TYPE" "SULT1C3 WILD-TYPE" "SULT1C3 WILD-TYPE" "SULT1C3 WILD-TYPE" 
       TCGA-IB-7644        TCGA-IB-7649        TCGA-IB-7651        TCGA-IB-7885 
"SULT1C3 WILD-TYPE" "SULT1C3 WILD-TYPE" "SULT1C3 WILD-TYPE" "SULT1C3 WILD-TYPE" 
       TCGA-IB-7887        TCGA-IB-7891        TCGA-IB-8126        TCGA-IB-8127 
"SULT1C3 WILD-TYPE" "SULT1C3 WILD-TYPE" "SULT1C3 WILD-TYPE" "SULT1C3 WILD-TYPE" 
       TCGA-IB-A5SS        TCGA-IB-A6UG        TCGA-LB-A7SX        TCGA-OE-A75W 
"SULT1C3 WILD-TYPE" "SULT1C3 WILD-TYPE" "SULT1C3 WILD-TYPE" "SULT1C3 WILD-TYPE" 
D65V10, continuous
[1] "Remove cluster labels:" "SULT1C3 MUTATED"       
clus
  SULT1C3 MUTATED SULT1C3 WILD-TYPE 
                1                18 
       TCGA-FB-A4P5        TCGA-FB-A4P6        TCGA-FB-A5VM        TCGA-FB-A78T 
"SULT1C3 WILD-TYPE" "SULT1C3 WILD-TYPE" "SULT1C3 WILD-TYPE" "SULT1C3 WILD-TYPE" 
       TCGA-FB-A7DR        TCGA-H6-8124        TCGA-H8-A6C1        TCGA-IB-7644 
"SULT1C3 WILD-TYPE" "SULT1C3 WILD-TYPE" "SULT1C3 WILD-TYPE" "SULT1C3 WILD-TYPE" 
       TCGA-IB-7649        TCGA-IB-7651        TCGA-IB-7885        TCGA-IB-7891 
"SULT1C3 WILD-TYPE" "SULT1C3 WILD-TYPE" "SULT1C3 WILD-TYPE" "SULT1C3 WILD-TYPE" 
       TCGA-IB-8126        TCGA-IB-8127        TCGA-IB-A5SS        TCGA-IB-A6UG 
"SULT1C3 WILD-TYPE" "SULT1C3 WILD-TYPE" "SULT1C3 WILD-TYPE" "SULT1C3 WILD-TYPE" 
       TCGA-LB-A7SX        TCGA-OE-A75W 
"SULT1C3 WILD-TYPE" "SULT1C3 WILD-TYPE" 
                   vv
clus                R0 R1 RX
  SULT1C3 MUTATED    2  1  0
  SULT1C3 WILD-TYPE 40 23  2
D65V11, multiclass
    clus
vv   SULT1C3 MUTATED SULT1C3 WILD-TYPE
  R0               2                40
  R1               1                23
  RX               0                 2
D65V12, continuous

Clustering(66) Variable = CCR3 MUTATION ANALYSIS
D66V1, survival
                sevent
clus2             0  1
  CCR3 MUTATED    5  3
  CCR3 WILD-TYPE 35 26
  CCR3 MUTATED CCR3 WILD-TYPE 
             8             61 
  CCR3 MUTATED CCR3 WILD-TYPE 
             3             26 
$`CCR3 MUTATED`
TCGA-F2-6880 TCGA-F2-A44H TCGA-FB-A545 TCGA-HZ-8003 TCGA-HZ-8005 TCGA-IB-7645 
        9.70        19.27        12.66         0.69         3.95        49.38 
TCGA-IB-7893 TCGA-IB-A5ST 
        3.85         0.26 

$`CCR3 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-FB-A4P5 TCGA-FB-A4P6 
       10.98        11.84         7.10         5.03         0.13        11.93 
TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR TCGA-FZ-5920 TCGA-FZ-5922 TCGA-FZ-5923 
        2.47         0.03         5.46         2.01        36.20        20.81 
TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-7919 
       12.89         7.66        13.02         7.89         0.92         0.66 
TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8001 
        0.13         0.26        12.13        11.87         0.26         0.62 
TCGA-HZ-8002 TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G 
        0.79         0.92         0.53         0.16         2.99         0.76 
TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7646 TCGA-IB-7647 
        0.95         6.38         1.51        11.41         4.77        21.90 
TCGA-IB-7649 TCGA-IB-7651 TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 
       15.35        19.82        15.65        27.98         4.04         3.62 
TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-7897 TCGA-IB-8126 
       43.79        15.81        19.66        16.04        15.98         0.56 
TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A6UG 
       17.16        10.82         9.86         7.20        15.12         1.35 
TCGA-LB-A7SX TCGA-OE-A75W TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E 
        4.18         3.62         8.12        13.68        16.80        14.14 
TCGA-US-A77J 
       18.67 

  CCR3 MUTATED CCR3 WILD-TYPE 
          0.26           0.03 
  CCR3 MUTATED CCR3 WILD-TYPE 
         49.38          43.79 
  CCR3 MUTATED CCR3 WILD-TYPE 
         6.825          7.660 
[1] "0.3 - 49.4 (6.8)" "0.0 - 43.8 (7.7)"
    TCGA-F2-6879     TCGA-F2-6880     TCGA-F2-7273     TCGA-F2-7276 
"CCR3 WILD-TYPE"   "CCR3 MUTATED" "CCR3 WILD-TYPE" "CCR3 WILD-TYPE" 
    TCGA-F2-A44G     TCGA-F2-A44H     TCGA-FB-A4P5     TCGA-FB-A4P6 
"CCR3 WILD-TYPE"   "CCR3 MUTATED" "CCR3 WILD-TYPE" "CCR3 WILD-TYPE" 
    TCGA-FB-A545     TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-FB-A7DR 
  "CCR3 MUTATED" "CCR3 WILD-TYPE" "CCR3 WILD-TYPE" "CCR3 WILD-TYPE" 
    TCGA-FZ-5920     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-H6-8124 
"CCR3 WILD-TYPE" "CCR3 WILD-TYPE" "CCR3 WILD-TYPE" "CCR3 WILD-TYPE" 
    TCGA-H6-A45N     TCGA-H8-A6C1     TCGA-HZ-7289     TCGA-HZ-7918 
"CCR3 WILD-TYPE" "CCR3 WILD-TYPE" "CCR3 WILD-TYPE" "CCR3 WILD-TYPE" 
    TCGA-HZ-7919     TCGA-HZ-7922     TCGA-HZ-7923     TCGA-HZ-7924 
"CCR3 WILD-TYPE" "CCR3 WILD-TYPE" "CCR3 WILD-TYPE" "CCR3 WILD-TYPE" 
    TCGA-HZ-7925     TCGA-HZ-7926     TCGA-HZ-8001     TCGA-HZ-8002 
"CCR3 WILD-TYPE" "CCR3 WILD-TYPE" "CCR3 WILD-TYPE" "CCR3 WILD-TYPE" 
    TCGA-HZ-8003     TCGA-HZ-8005     TCGA-HZ-8315     TCGA-HZ-8317 
  "CCR3 MUTATED"   "CCR3 MUTATED" "CCR3 WILD-TYPE" "CCR3 WILD-TYPE" 
    TCGA-HZ-8636     TCGA-HZ-8638     TCGA-HZ-A49G     TCGA-HZ-A49H 
"CCR3 WILD-TYPE" "CCR3 WILD-TYPE" "CCR3 WILD-TYPE" "CCR3 WILD-TYPE" 
    TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-IB-7644     TCGA-IB-7645 
"CCR3 WILD-TYPE" "CCR3 WILD-TYPE" "CCR3 WILD-TYPE"   "CCR3 MUTATED" 
    TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7651 
"CCR3 WILD-TYPE" "CCR3 WILD-TYPE" "CCR3 WILD-TYPE" "CCR3 WILD-TYPE" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887 
"CCR3 WILD-TYPE" "CCR3 WILD-TYPE" "CCR3 WILD-TYPE" "CCR3 WILD-TYPE" 
    TCGA-IB-7888     TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891 
"CCR3 WILD-TYPE" "CCR3 WILD-TYPE" "CCR3 WILD-TYPE" "CCR3 WILD-TYPE" 
    TCGA-IB-7893     TCGA-IB-7897     TCGA-IB-8126     TCGA-IB-8127 
  "CCR3 MUTATED" "CCR3 WILD-TYPE" "CCR3 WILD-TYPE" "CCR3 WILD-TYPE" 
    TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS 
"CCR3 WILD-TYPE" "CCR3 WILD-TYPE" "CCR3 WILD-TYPE" "CCR3 WILD-TYPE" 
    TCGA-IB-A5ST     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
  "CCR3 MUTATED" "CCR3 WILD-TYPE" "CCR3 WILD-TYPE" "CCR3 WILD-TYPE" 
    TCGA-PZ-A5RE     TCGA-Q3-A5QY     TCGA-US-A779     TCGA-US-A77E 
"CCR3 WILD-TYPE" "CCR3 WILD-TYPE" "CCR3 WILD-TYPE" "CCR3 WILD-TYPE" 
    TCGA-US-A77J 
"CCR3 WILD-TYPE" 
    TCGA-F2-6879     TCGA-F2-6880     TCGA-F2-7273     TCGA-F2-7276 
"CCR3 WILD-TYPE"   "CCR3 MUTATED" "CCR3 WILD-TYPE" "CCR3 WILD-TYPE" 
    TCGA-F2-A44G     TCGA-F2-A44H     TCGA-FB-A4P5     TCGA-FB-A4P6 
"CCR3 WILD-TYPE"   "CCR3 MUTATED" "CCR3 WILD-TYPE" "CCR3 WILD-TYPE" 
    TCGA-FB-A545     TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-FB-A7DR 
  "CCR3 MUTATED" "CCR3 WILD-TYPE" "CCR3 WILD-TYPE" "CCR3 WILD-TYPE" 
    TCGA-FZ-5920     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-H6-8124 
"CCR3 WILD-TYPE" "CCR3 WILD-TYPE" "CCR3 WILD-TYPE" "CCR3 WILD-TYPE" 
    TCGA-H6-A45N     TCGA-H8-A6C1     TCGA-HZ-7289     TCGA-HZ-7918 
"CCR3 WILD-TYPE" "CCR3 WILD-TYPE" "CCR3 WILD-TYPE" "CCR3 WILD-TYPE" 
    TCGA-HZ-7919     TCGA-HZ-7922     TCGA-HZ-7923     TCGA-HZ-7924 
"CCR3 WILD-TYPE" "CCR3 WILD-TYPE" "CCR3 WILD-TYPE" "CCR3 WILD-TYPE" 
    TCGA-HZ-7925     TCGA-HZ-7926     TCGA-HZ-8001     TCGA-HZ-8002 
"CCR3 WILD-TYPE" "CCR3 WILD-TYPE" "CCR3 WILD-TYPE" "CCR3 WILD-TYPE" 
    TCGA-HZ-8003     TCGA-HZ-8005     TCGA-HZ-8315     TCGA-HZ-8317 
  "CCR3 MUTATED"   "CCR3 MUTATED" "CCR3 WILD-TYPE" "CCR3 WILD-TYPE" 
    TCGA-HZ-8636     TCGA-HZ-8638     TCGA-HZ-A49G     TCGA-HZ-A49H 
"CCR3 WILD-TYPE" "CCR3 WILD-TYPE" "CCR3 WILD-TYPE" "CCR3 WILD-TYPE" 
    TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-IB-7644     TCGA-IB-7645 
"CCR3 WILD-TYPE" "CCR3 WILD-TYPE" "CCR3 WILD-TYPE"   "CCR3 MUTATED" 
    TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7651 
"CCR3 WILD-TYPE" "CCR3 WILD-TYPE" "CCR3 WILD-TYPE" "CCR3 WILD-TYPE" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887 
"CCR3 WILD-TYPE" "CCR3 WILD-TYPE" "CCR3 WILD-TYPE" "CCR3 WILD-TYPE" 
    TCGA-IB-7888     TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891 
"CCR3 WILD-TYPE" "CCR3 WILD-TYPE" "CCR3 WILD-TYPE" "CCR3 WILD-TYPE" 
    TCGA-IB-7893     TCGA-IB-7897     TCGA-IB-8126     TCGA-IB-8127 
  "CCR3 MUTATED" "CCR3 WILD-TYPE" "CCR3 WILD-TYPE" "CCR3 WILD-TYPE" 
    TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS 
"CCR3 WILD-TYPE" "CCR3 WILD-TYPE" "CCR3 WILD-TYPE" "CCR3 WILD-TYPE" 
    TCGA-IB-A5ST     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
  "CCR3 MUTATED" "CCR3 WILD-TYPE" "CCR3 WILD-TYPE" "CCR3 WILD-TYPE" 
    TCGA-PZ-A5RE     TCGA-Q3-A5QY     TCGA-US-A779     TCGA-US-A77E 
"CCR3 WILD-TYPE" "CCR3 WILD-TYPE" "CCR3 WILD-TYPE" "CCR3 WILD-TYPE" 
    TCGA-US-A77J 
"CCR3 WILD-TYPE" 
    TCGA-F2-6879     TCGA-F2-6880     TCGA-F2-7273     TCGA-F2-7276 
"CCR3 WILD-TYPE"   "CCR3 MUTATED" "CCR3 WILD-TYPE" "CCR3 WILD-TYPE" 
    TCGA-F2-A44G     TCGA-F2-A44H     TCGA-FB-A4P5     TCGA-FB-A4P6 
"CCR3 WILD-TYPE"   "CCR3 MUTATED" "CCR3 WILD-TYPE" "CCR3 WILD-TYPE" 
    TCGA-FB-A545     TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-FB-A7DR 
  "CCR3 MUTATED" "CCR3 WILD-TYPE" "CCR3 WILD-TYPE" "CCR3 WILD-TYPE" 
    TCGA-FZ-5920     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-H6-8124 
"CCR3 WILD-TYPE" "CCR3 WILD-TYPE" "CCR3 WILD-TYPE" "CCR3 WILD-TYPE" 
    TCGA-H6-A45N     TCGA-H8-A6C1     TCGA-HZ-7289     TCGA-HZ-7918 
"CCR3 WILD-TYPE" "CCR3 WILD-TYPE" "CCR3 WILD-TYPE" "CCR3 WILD-TYPE" 
    TCGA-HZ-7919     TCGA-HZ-7922     TCGA-HZ-7923     TCGA-HZ-7924 
"CCR3 WILD-TYPE" "CCR3 WILD-TYPE" "CCR3 WILD-TYPE" "CCR3 WILD-TYPE" 
    TCGA-HZ-7925     TCGA-HZ-7926     TCGA-HZ-8001     TCGA-HZ-8002 
"CCR3 WILD-TYPE" "CCR3 WILD-TYPE" "CCR3 WILD-TYPE" "CCR3 WILD-TYPE" 
    TCGA-HZ-8003     TCGA-HZ-8005     TCGA-HZ-8315     TCGA-HZ-8317 
  "CCR3 MUTATED"   "CCR3 MUTATED" "CCR3 WILD-TYPE" "CCR3 WILD-TYPE" 
    TCGA-HZ-8636     TCGA-HZ-8638     TCGA-HZ-A49G     TCGA-HZ-A49H 
"CCR3 WILD-TYPE" "CCR3 WILD-TYPE" "CCR3 WILD-TYPE" "CCR3 WILD-TYPE" 
    TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-IB-7644     TCGA-IB-7645 
"CCR3 WILD-TYPE" "CCR3 WILD-TYPE" "CCR3 WILD-TYPE"   "CCR3 MUTATED" 
    TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7651 
"CCR3 WILD-TYPE" "CCR3 WILD-TYPE" "CCR3 WILD-TYPE" "CCR3 WILD-TYPE" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887 
"CCR3 WILD-TYPE" "CCR3 WILD-TYPE" "CCR3 WILD-TYPE" "CCR3 WILD-TYPE" 
    TCGA-IB-7888     TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891 
"CCR3 WILD-TYPE" "CCR3 WILD-TYPE" "CCR3 WILD-TYPE" "CCR3 WILD-TYPE" 
    TCGA-IB-7893     TCGA-IB-7897     TCGA-IB-8126     TCGA-IB-8127 
  "CCR3 MUTATED" "CCR3 WILD-TYPE" "CCR3 WILD-TYPE" "CCR3 WILD-TYPE" 
    TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS 
"CCR3 WILD-TYPE" "CCR3 WILD-TYPE" "CCR3 WILD-TYPE" "CCR3 WILD-TYPE" 
    TCGA-IB-A5ST     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
  "CCR3 MUTATED" "CCR3 WILD-TYPE" "CCR3 WILD-TYPE" "CCR3 WILD-TYPE" 
    TCGA-PZ-A5RE     TCGA-Q3-A5QY     TCGA-US-A779     TCGA-US-A77E 
"CCR3 WILD-TYPE" "CCR3 WILD-TYPE" "CCR3 WILD-TYPE" "CCR3 WILD-TYPE" 
    TCGA-US-A77J 
"CCR3 WILD-TYPE" 
[1] "hr=" "2.3"
D66V2, continuous
                vv
clus             STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  CCR3 MUTATED          0        0         2         6         0        0
  CCR3 WILD-TYPE        1        4         9        45         2        3
D66V3, multiclass
                vv
clus             T1+T2 T3+T4
  CCR3 MUTATED       0     8
  CCR3 WILD-TYPE     6    58
D66V4, multiclass
       clus
vv      CCR3 MUTATED CCR3 WILD-TYPE
  T1+T2            0              6
  T3+T4            8             58
D66V5, binary
                cls
clus              0  1
  CCR3 MUTATED    2  6
  CCR3 WILD-TYPE 15 48
[1] "tbl2"
                cls
clus             [,1] [,2]
  CCR3 MUTATED      2    6
  CCR3 WILD-TYPE   15   48
   clus
vv  CCR3 MUTATED CCR3 WILD-TYPE
  0            2             15
  1            6             48
                vv
clus             M0 M1 MX
  CCR3 MUTATED    6  0  2
  CCR3 WILD-TYPE 33  3 28
D66V6, multiclass
    clus
vv   CCR3 MUTATED CCR3 WILD-TYPE
  M0            6             33
  M1            0              3
  MX            2             28
D66V7, binary
                cls
clus              0  1
  CCR3 MUTATED    4  4
  CCR3 WILD-TYPE 32 32
[1] "tbl2"
                cls
clus             [,1] [,2]
  CCR3 MUTATED      4    4
  CCR3 WILD-TYPE   32   32
        clus
vv       CCR3 MUTATED CCR3 WILD-TYPE
  FEMALE            4             32
  MALE              4             32
                vv
clus             PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  CCR3 MUTATED                                     8
  CCR3 WILD-TYPE                                  57
                vv
clus             PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  CCR3 MUTATED                                       0
  CCR3 WILD-TYPE                                     4
                vv
clus             PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  CCR3 MUTATED                                                  0
  CCR3 WILD-TYPE                                                2
D66V8, multiclass
                                                  clus
vv                                                 CCR3 MUTATED CCR3 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                         8             57
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                       0              4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA            0              2
D66V9, continuous
[1] "Remove cluster labels:" "CCR3 MUTATED"          
clus
  CCR3 MUTATED CCR3 WILD-TYPE 
             1             21 
    TCGA-FB-A4P5     TCGA-FB-A4P6     TCGA-FB-A5VM     TCGA-FB-A78T 
"CCR3 WILD-TYPE" "CCR3 WILD-TYPE" "CCR3 WILD-TYPE" "CCR3 WILD-TYPE" 
    TCGA-FB-A7DR     TCGA-H6-8124     TCGA-H6-A45N     TCGA-H8-A6C1 
"CCR3 WILD-TYPE" "CCR3 WILD-TYPE" "CCR3 WILD-TYPE" "CCR3 WILD-TYPE" 
    TCGA-IB-7644     TCGA-IB-7649     TCGA-IB-7651     TCGA-IB-7885 
"CCR3 WILD-TYPE" "CCR3 WILD-TYPE" "CCR3 WILD-TYPE" "CCR3 WILD-TYPE" 
    TCGA-IB-7886     TCGA-IB-7887     TCGA-IB-7891     TCGA-IB-8126 
"CCR3 WILD-TYPE" "CCR3 WILD-TYPE" "CCR3 WILD-TYPE" "CCR3 WILD-TYPE" 
    TCGA-IB-8127     TCGA-IB-A5SS     TCGA-IB-A6UG     TCGA-LB-A7SX 
"CCR3 WILD-TYPE" "CCR3 WILD-TYPE" "CCR3 WILD-TYPE" "CCR3 WILD-TYPE" 
    TCGA-OE-A75W 
"CCR3 WILD-TYPE" 
D66V10, continuous
                vv
clus             R0 R1 RX
  CCR3 MUTATED    6  1  0
  CCR3 WILD-TYPE 36 23  2
D66V11, multiclass
    clus
vv   CCR3 MUTATED CCR3 WILD-TYPE
  R0            6             36
  R1            1             23
  RX            0              2
D66V12, continuous

Clustering(67) Variable = CLCC1 MUTATION ANALYSIS
D67V1, survival
                 sevent
clus2              0  1
  CLCC1 MUTATED    3  1
  CLCC1 WILD-TYPE 37 28
  CLCC1 MUTATED CLCC1 WILD-TYPE 
              4              65 
  CLCC1 MUTATED CLCC1 WILD-TYPE 
              1              28 
$`CLCC1 MUTATED`
TCGA-F2-7273 TCGA-HZ-8003 TCGA-HZ-A49H TCGA-IB-7885 
       11.84         0.69         0.95        27.98 

$`CLCC1 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H TCGA-FB-A4P5 
       10.98         9.70         7.10         5.03        19.27         0.13 
TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR TCGA-FZ-5920 
       11.93        12.66         2.47         0.03         5.46         2.01 
TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7289 
       36.20        20.81        12.89         7.66        13.02         7.89 
TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 
        0.92         0.66         0.13         0.26        12.13        11.87 
TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 
        0.26         0.62         0.79         3.95         0.92         0.53 
TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 
        0.16         2.99         0.76         6.38         1.51        11.41 
TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7651 TCGA-IB-7652 
       49.38         4.77        21.90        15.35        19.82        15.65 
TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 
        4.04         3.62        43.79        15.81        19.66        16.04 
TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP 
        3.85        15.98         0.56        17.16        10.82         9.86 
TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W 
        7.20        15.12         0.26         1.35         4.18         3.62 
TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
        8.12        13.68        16.80        14.14        18.67 

  CLCC1 MUTATED CLCC1 WILD-TYPE 
           0.69            0.03 
  CLCC1 MUTATED CLCC1 WILD-TYPE 
          27.98           49.38 
  CLCC1 MUTATED CLCC1 WILD-TYPE 
          6.395           7.660 
[1] "0.7 - 28.0 (6.4)" "0.0 - 49.4 (7.7)"
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE"   "CLCC1 MUTATED" "CLCC1 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
  "CLCC1 MUTATED" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE"   "CLCC1 MUTATED" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"CLCC1 WILD-TYPE"   "CLCC1 MUTATED" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" 
     TCGA-US-A77J 
"CLCC1 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE"   "CLCC1 MUTATED" "CLCC1 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
  "CLCC1 MUTATED" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE"   "CLCC1 MUTATED" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"CLCC1 WILD-TYPE"   "CLCC1 MUTATED" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" 
     TCGA-US-A77J 
"CLCC1 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE"   "CLCC1 MUTATED" "CLCC1 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
  "CLCC1 MUTATED" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE"   "CLCC1 MUTATED" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"CLCC1 WILD-TYPE"   "CLCC1 MUTATED" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" 
     TCGA-US-A77J 
"CLCC1 WILD-TYPE" 
[1] "hr=" "2"  
D67V2, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  CLCC1 MUTATED          0        0         0         5         0        0
  CLCC1 WILD-TYPE        1        4        11        46         2        3
D67V3, multiclass
                 vv
clus              T1+T2 T3+T4
  CLCC1 MUTATED       0     5
  CLCC1 WILD-TYPE     6    61
D67V4, multiclass
       clus
vv      CLCC1 MUTATED CLCC1 WILD-TYPE
  T1+T2             0               6
  T3+T4             5              61
D67V5, binary
                 cls
clus               0  1
  CLCC1 MUTATED    0  5
  CLCC1 WILD-TYPE 17 49
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CLCC1 MUTATED      0    5
  CLCC1 WILD-TYPE   17   49
   clus
vv  CLCC1 MUTATED CLCC1 WILD-TYPE
  0             0              17
  1             5              49
                 vv
clus              M0 M1 MX
  CLCC1 MUTATED    2  0  3
  CLCC1 WILD-TYPE 37  3 27
D67V6, multiclass
    clus
vv   CLCC1 MUTATED CLCC1 WILD-TYPE
  M0             2              37
  M1             0               3
  MX             3              27
D67V7, binary
                 cls
clus               0  1
  CLCC1 MUTATED    4  1
  CLCC1 WILD-TYPE 32 35
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CLCC1 MUTATED      4    1
  CLCC1 WILD-TYPE   32   35
        clus
vv       CLCC1 MUTATED CLCC1 WILD-TYPE
  FEMALE             4              32
  MALE               1              35
                 vv
clus              PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  CLCC1 MUTATED                                     5
  CLCC1 WILD-TYPE                                  60
                 vv
clus              PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  CLCC1 MUTATED                                       0
  CLCC1 WILD-TYPE                                     4
                 vv
clus              PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  CLCC1 MUTATED                                                  0
  CLCC1 WILD-TYPE                                                2
D67V8, multiclass
                                                  clus
vv                                                 CLCC1 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                          5
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                        0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA             0
                                                  clus
vv                                                 CLCC1 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                           60
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                          4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA               2
D67V9, continuous
[1] "Remove cluster labels:" "CLCC1 MUTATED"         
clus
  CLCC1 MUTATED CLCC1 WILD-TYPE 
              1              21 
     TCGA-F2-6880      TCGA-FB-A4P5      TCGA-FB-A4P6      TCGA-FB-A5VM 
"CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" 
     TCGA-FB-A78T      TCGA-FB-A7DR      TCGA-H6-8124      TCGA-H6-A45N 
"CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" 
     TCGA-H8-A6C1      TCGA-IB-7644      TCGA-IB-7649      TCGA-IB-7651 
"CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" 
     TCGA-IB-7886      TCGA-IB-7887      TCGA-IB-7891      TCGA-IB-8126 
"CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" 
     TCGA-IB-8127      TCGA-IB-A5SS      TCGA-IB-A6UG      TCGA-LB-A7SX 
"CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" 
     TCGA-OE-A75W 
"CLCC1 WILD-TYPE" 
D67V10, continuous
[1] "Remove cluster labels:" "CLCC1 MUTATED"         
clus
  CLCC1 MUTATED CLCC1 WILD-TYPE 
              1              18 
     TCGA-FB-A4P5      TCGA-FB-A4P6      TCGA-FB-A5VM      TCGA-FB-A78T 
"CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" 
     TCGA-FB-A7DR      TCGA-H6-8124      TCGA-H8-A6C1      TCGA-IB-7644 
"CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" 
     TCGA-IB-7649      TCGA-IB-7651      TCGA-IB-7886      TCGA-IB-7891 
"CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" 
     TCGA-IB-8126      TCGA-IB-8127      TCGA-IB-A5SS      TCGA-IB-A6UG 
"CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" 
     TCGA-LB-A7SX      TCGA-OE-A75W 
"CLCC1 WILD-TYPE" "CLCC1 WILD-TYPE" 
                 vv
clus              R0 R1 RX
  CLCC1 MUTATED    4  1  0
  CLCC1 WILD-TYPE 38 23  2
D67V11, multiclass
    clus
vv   CLCC1 MUTATED CLCC1 WILD-TYPE
  R0             4              38
  R1             1              23
  RX             0               2
D67V12, continuous

Clustering(68) Variable = PABPC1 MUTATION ANALYSIS
D68V1, survival
                  sevent
clus2               0  1
  PABPC1 MUTATED    6  7
  PABPC1 WILD-TYPE 34 22
  PABPC1 MUTATED PABPC1 WILD-TYPE 
              13               56 
  PABPC1 MUTATED PABPC1 WILD-TYPE 
               7               22 
$`PABPC1 MUTATED`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-A44H TCGA-FB-A545 TCGA-H6-8124 TCGA-H6-A45N 
       10.98         9.70        19.27        12.66        12.89         7.66 
TCGA-HZ-8005 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-IB-7644 TCGA-IB-7649 TCGA-IB-7887 
        3.95         0.76         0.95        11.41        15.35         3.62 
TCGA-IB-7889 
       15.81 

$`PABPC1 WILD-TYPE`
TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-FB-A4P5 TCGA-FB-A4P6 TCGA-FB-A5VM 
       11.84         7.10         5.03         0.13        11.93         2.47 
TCGA-FB-A78T TCGA-FB-A7DR TCGA-FZ-5920 TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H8-A6C1 
        0.03         5.46         2.01        36.20        20.81        13.02 
TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 
        7.89         0.92         0.66         0.13         0.26        12.13 
TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8315 
       11.87         0.26         0.62         0.79         0.69         0.92 
TCGA-HZ-8317 TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7645 
        0.53         0.16         2.99         6.38         1.51        49.38 
TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7651 TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7886 
        4.77        21.90        19.82        15.65        27.98         4.04 
TCGA-IB-7888 TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-8126 
       43.79        19.66        16.04         3.85        15.98         0.56 
TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST 
       17.16        10.82         9.86         7.20        15.12         0.26 
TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 
        1.35         4.18         3.62         8.12        13.68        16.80 
TCGA-US-A77E TCGA-US-A77J 
       14.14        18.67 

  PABPC1 MUTATED PABPC1 WILD-TYPE 
            0.76             0.03 
  PABPC1 MUTATED PABPC1 WILD-TYPE 
           19.27            49.38 
  PABPC1 MUTATED PABPC1 WILD-TYPE 
           10.98             6.74 
[1] "0.8 - 19.3 (11.0)" "0.0 - 49.4 (6.7)" 
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
  "PABPC1 MUTATED"   "PABPC1 MUTATED" "PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"PABPC1 WILD-TYPE"   "PABPC1 MUTATED" "PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
  "PABPC1 MUTATED" "PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE"   "PABPC1 MUTATED" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
  "PABPC1 MUTATED" "PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
"PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
"PABPC1 WILD-TYPE"   "PABPC1 MUTATED" "PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
"PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE"   "PABPC1 MUTATED"   "PABPC1 MUTATED" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
"PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE"   "PABPC1 MUTATED" "PABPC1 WILD-TYPE" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
"PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE"   "PABPC1 MUTATED" "PABPC1 WILD-TYPE" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
"PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE"   "PABPC1 MUTATED" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
"PABPC1 WILD-TYPE"   "PABPC1 MUTATED" "PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
"PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
"PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" 
      TCGA-US-A77J 
"PABPC1 WILD-TYPE" 
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
  "PABPC1 MUTATED"   "PABPC1 MUTATED" "PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"PABPC1 WILD-TYPE"   "PABPC1 MUTATED" "PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
  "PABPC1 MUTATED" "PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE"   "PABPC1 MUTATED" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
  "PABPC1 MUTATED" "PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
"PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
"PABPC1 WILD-TYPE"   "PABPC1 MUTATED" "PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
"PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE"   "PABPC1 MUTATED"   "PABPC1 MUTATED" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
"PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE"   "PABPC1 MUTATED" "PABPC1 WILD-TYPE" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
"PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE"   "PABPC1 MUTATED" "PABPC1 WILD-TYPE" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
"PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE"   "PABPC1 MUTATED" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
"PABPC1 WILD-TYPE"   "PABPC1 MUTATED" "PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
"PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
"PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" 
      TCGA-US-A77J 
"PABPC1 WILD-TYPE" 
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
  "PABPC1 MUTATED"   "PABPC1 MUTATED" "PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"PABPC1 WILD-TYPE"   "PABPC1 MUTATED" "PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
  "PABPC1 MUTATED" "PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE"   "PABPC1 MUTATED" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
  "PABPC1 MUTATED" "PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
"PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
"PABPC1 WILD-TYPE"   "PABPC1 MUTATED" "PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
"PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE"   "PABPC1 MUTATED"   "PABPC1 MUTATED" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
"PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE"   "PABPC1 MUTATED" "PABPC1 WILD-TYPE" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
"PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE"   "PABPC1 MUTATED" "PABPC1 WILD-TYPE" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
"PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE"   "PABPC1 MUTATED" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
"PABPC1 WILD-TYPE"   "PABPC1 MUTATED" "PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
"PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
"PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" 
      TCGA-US-A77J 
"PABPC1 WILD-TYPE" 
[1] "hr=" "2"  
D68V2, continuous
                  vv
clus               STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  PABPC1 MUTATED          0        0         1        11         0        1
  PABPC1 WILD-TYPE        1        4        10        40         2        2
D68V3, multiclass
                  vv
clus               T1+T2 T3+T4
  PABPC1 MUTATED       1    12
  PABPC1 WILD-TYPE     5    54
D68V4, multiclass
       clus
vv      PABPC1 MUTATED PABPC1 WILD-TYPE
  T1+T2              1                5
  T3+T4             12               54
D68V5, binary
                  cls
clus                0  1
  PABPC1 MUTATED    1 12
  PABPC1 WILD-TYPE 16 42
[1] "tbl2"
                  cls
clus               [,1] [,2]
  PABPC1 MUTATED      1   12
  PABPC1 WILD-TYPE   16   42
   clus
vv  PABPC1 MUTATED PABPC1 WILD-TYPE
  0              1               16
  1             12               42
                  vv
clus               M0 M1 MX
  PABPC1 MUTATED    8  1  4
  PABPC1 WILD-TYPE 31  2 26
D68V6, multiclass
    clus
vv   PABPC1 MUTATED PABPC1 WILD-TYPE
  M0              8               31
  M1              1                2
  MX              4               26
D68V7, binary
                  cls
clus                0  1
  PABPC1 MUTATED    9  4
  PABPC1 WILD-TYPE 27 32
[1] "tbl2"
                  cls
clus               [,1] [,2]
  PABPC1 MUTATED      9    4
  PABPC1 WILD-TYPE   27   32
        clus
vv       PABPC1 MUTATED PABPC1 WILD-TYPE
  FEMALE              9               27
  MALE                4               32
                  vv
clus               PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  PABPC1 MUTATED                                    11
  PABPC1 WILD-TYPE                                  54
                  vv
clus               PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  PABPC1 MUTATED                                       1
  PABPC1 WILD-TYPE                                     3
                  vv
clus               PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  PABPC1 MUTATED                                                  0
  PABPC1 WILD-TYPE                                                2
D68V8, multiclass
                                                  clus
vv                                                 PABPC1 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                          11
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                         1
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA              0
                                                  clus
vv                                                 PABPC1 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                            54
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                           3
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                2
D68V9, continuous
D68V10, continuous
                  vv
clus               R0 R1 RX
  PABPC1 MUTATED    6  5  0
  PABPC1 WILD-TYPE 36 19  2
D68V11, multiclass
    clus
vv   PABPC1 MUTATED PABPC1 WILD-TYPE
  R0              6               36
  R1              5               19
  RX              0                2
D68V12, continuous

Clustering(69) Variable = CCDC103 MUTATION ANALYSIS
D69V1, survival
                   sevent
clus2                0  1
  CCDC103 MUTATED    3  2
  CCDC103 WILD-TYPE 37 27
  CCDC103 MUTATED CCDC103 WILD-TYPE 
                5                64 
  CCDC103 MUTATED CCDC103 WILD-TYPE 
                2                27 
$`CCDC103 MUTATED`
TCGA-FB-A4P5 TCGA-HZ-7919 TCGA-HZ-8003 TCGA-IB-7893 TCGA-IB-8126 
        0.13         0.66         0.69         3.85         0.56 

$`CCDC103 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR TCGA-FZ-5920 
       11.93        12.66         2.47         0.03         5.46         2.01 
TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7289 
       36.20        20.81        12.89         7.66        13.02         7.89 
TCGA-HZ-7918 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 
        0.92         0.13         0.26        12.13        11.87         0.26 
TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8636 
        0.62         0.79         3.95         0.92         0.53         0.16 
TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 
        2.99         0.76         0.95         6.38         1.51        11.41 
TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7651 TCGA-IB-7652 
       49.38         4.77        21.90        15.35        19.82        15.65 
TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 
       27.98         4.04         3.62        43.79        15.81        19.66 
TCGA-IB-7891 TCGA-IB-7897 TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ 
       16.04        15.98        17.16        10.82         9.86         7.20 
TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W TCGA-PZ-A5RE 
       15.12         0.26         1.35         4.18         3.62         8.12 
TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
       13.68        16.80        14.14        18.67 

  CCDC103 MUTATED CCDC103 WILD-TYPE 
             0.13              0.03 
  CCDC103 MUTATED CCDC103 WILD-TYPE 
             3.85             49.38 
  CCDC103 MUTATED CCDC103 WILD-TYPE 
             0.66              8.91 
[1] "0.1 - 3.9 (0.7)"  "0.0 - 49.4 (8.9)"
       TCGA-F2-6879        TCGA-F2-6880        TCGA-F2-7273        TCGA-F2-7276 
"CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" 
       TCGA-F2-A44G        TCGA-F2-A44H        TCGA-FB-A4P5        TCGA-FB-A4P6 
"CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE"   "CCDC103 MUTATED" "CCDC103 WILD-TYPE" 
       TCGA-FB-A545        TCGA-FB-A5VM        TCGA-FB-A78T        TCGA-FB-A7DR 
"CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" 
       TCGA-FZ-5920        TCGA-FZ-5922        TCGA-FZ-5923        TCGA-H6-8124 
"CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" 
       TCGA-H6-A45N        TCGA-H8-A6C1        TCGA-HZ-7289        TCGA-HZ-7918 
"CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" 
       TCGA-HZ-7919        TCGA-HZ-7922        TCGA-HZ-7923        TCGA-HZ-7924 
  "CCDC103 MUTATED" "CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" 
       TCGA-HZ-7925        TCGA-HZ-7926        TCGA-HZ-8001        TCGA-HZ-8002 
"CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" 
       TCGA-HZ-8003        TCGA-HZ-8005        TCGA-HZ-8315        TCGA-HZ-8317 
  "CCDC103 MUTATED" "CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" 
       TCGA-HZ-8636        TCGA-HZ-8638        TCGA-HZ-A49G        TCGA-HZ-A49H 
"CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" 
       TCGA-HZ-A4BH        TCGA-HZ-A4BK        TCGA-IB-7644        TCGA-IB-7645 
"CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" 
       TCGA-IB-7646        TCGA-IB-7647        TCGA-IB-7649        TCGA-IB-7651 
"CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" 
       TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-7886        TCGA-IB-7887 
"CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" 
       TCGA-IB-7888        TCGA-IB-7889        TCGA-IB-7890        TCGA-IB-7891 
"CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" 
       TCGA-IB-7893        TCGA-IB-7897        TCGA-IB-8126        TCGA-IB-8127 
  "CCDC103 MUTATED" "CCDC103 WILD-TYPE"   "CCDC103 MUTATED" "CCDC103 WILD-TYPE" 
       TCGA-IB-A5SO        TCGA-IB-A5SP        TCGA-IB-A5SQ        TCGA-IB-A5SS 
"CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" 
       TCGA-IB-A5ST        TCGA-IB-A6UG        TCGA-LB-A7SX        TCGA-OE-A75W 
"CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" 
       TCGA-PZ-A5RE        TCGA-Q3-A5QY        TCGA-US-A779        TCGA-US-A77E 
"CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" 
       TCGA-US-A77J 
"CCDC103 WILD-TYPE" 
       TCGA-F2-6879        TCGA-F2-6880        TCGA-F2-7273        TCGA-F2-7276 
"CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" 
       TCGA-F2-A44G        TCGA-F2-A44H        TCGA-FB-A4P5        TCGA-FB-A4P6 
"CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE"   "CCDC103 MUTATED" "CCDC103 WILD-TYPE" 
       TCGA-FB-A545        TCGA-FB-A5VM        TCGA-FB-A78T        TCGA-FB-A7DR 
"CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" 
       TCGA-FZ-5920        TCGA-FZ-5922        TCGA-FZ-5923        TCGA-H6-8124 
"CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" 
       TCGA-H6-A45N        TCGA-H8-A6C1        TCGA-HZ-7289        TCGA-HZ-7918 
"CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" 
       TCGA-HZ-7919        TCGA-HZ-7922        TCGA-HZ-7923        TCGA-HZ-7924 
  "CCDC103 MUTATED" "CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" 
       TCGA-HZ-7925        TCGA-HZ-7926        TCGA-HZ-8001        TCGA-HZ-8002 
"CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" 
       TCGA-HZ-8003        TCGA-HZ-8005        TCGA-HZ-8315        TCGA-HZ-8317 
  "CCDC103 MUTATED" "CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" 
       TCGA-HZ-8636        TCGA-HZ-8638        TCGA-HZ-A49G        TCGA-HZ-A49H 
"CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" 
       TCGA-HZ-A4BH        TCGA-HZ-A4BK        TCGA-IB-7644        TCGA-IB-7645 
"CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" 
       TCGA-IB-7646        TCGA-IB-7647        TCGA-IB-7649        TCGA-IB-7651 
"CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" 
       TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-7886        TCGA-IB-7887 
"CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" 
       TCGA-IB-7888        TCGA-IB-7889        TCGA-IB-7890        TCGA-IB-7891 
"CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" 
       TCGA-IB-7893        TCGA-IB-7897        TCGA-IB-8126        TCGA-IB-8127 
  "CCDC103 MUTATED" "CCDC103 WILD-TYPE"   "CCDC103 MUTATED" "CCDC103 WILD-TYPE" 
       TCGA-IB-A5SO        TCGA-IB-A5SP        TCGA-IB-A5SQ        TCGA-IB-A5SS 
"CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" 
       TCGA-IB-A5ST        TCGA-IB-A6UG        TCGA-LB-A7SX        TCGA-OE-A75W 
"CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" 
       TCGA-PZ-A5RE        TCGA-Q3-A5QY        TCGA-US-A779        TCGA-US-A77E 
"CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" 
       TCGA-US-A77J 
"CCDC103 WILD-TYPE" 
       TCGA-F2-6879        TCGA-F2-6880        TCGA-F2-7273        TCGA-F2-7276 
"CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" 
       TCGA-F2-A44G        TCGA-F2-A44H        TCGA-FB-A4P5        TCGA-FB-A4P6 
"CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE"   "CCDC103 MUTATED" "CCDC103 WILD-TYPE" 
       TCGA-FB-A545        TCGA-FB-A5VM        TCGA-FB-A78T        TCGA-FB-A7DR 
"CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" 
       TCGA-FZ-5920        TCGA-FZ-5922        TCGA-FZ-5923        TCGA-H6-8124 
"CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" 
       TCGA-H6-A45N        TCGA-H8-A6C1        TCGA-HZ-7289        TCGA-HZ-7918 
"CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" 
       TCGA-HZ-7919        TCGA-HZ-7922        TCGA-HZ-7923        TCGA-HZ-7924 
  "CCDC103 MUTATED" "CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" 
       TCGA-HZ-7925        TCGA-HZ-7926        TCGA-HZ-8001        TCGA-HZ-8002 
"CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" 
       TCGA-HZ-8003        TCGA-HZ-8005        TCGA-HZ-8315        TCGA-HZ-8317 
  "CCDC103 MUTATED" "CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" 
       TCGA-HZ-8636        TCGA-HZ-8638        TCGA-HZ-A49G        TCGA-HZ-A49H 
"CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" 
       TCGA-HZ-A4BH        TCGA-HZ-A4BK        TCGA-IB-7644        TCGA-IB-7645 
"CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" 
       TCGA-IB-7646        TCGA-IB-7647        TCGA-IB-7649        TCGA-IB-7651 
"CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" 
       TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-7886        TCGA-IB-7887 
"CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" 
       TCGA-IB-7888        TCGA-IB-7889        TCGA-IB-7890        TCGA-IB-7891 
"CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" 
       TCGA-IB-7893        TCGA-IB-7897        TCGA-IB-8126        TCGA-IB-8127 
  "CCDC103 MUTATED" "CCDC103 WILD-TYPE"   "CCDC103 MUTATED" "CCDC103 WILD-TYPE" 
       TCGA-IB-A5SO        TCGA-IB-A5SP        TCGA-IB-A5SQ        TCGA-IB-A5SS 
"CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" 
       TCGA-IB-A5ST        TCGA-IB-A6UG        TCGA-LB-A7SX        TCGA-OE-A75W 
"CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" 
       TCGA-PZ-A5RE        TCGA-Q3-A5QY        TCGA-US-A779        TCGA-US-A77E 
"CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" 
       TCGA-US-A77J 
"CCDC103 WILD-TYPE" 
[1] "hr=" "24" 
D69V2, continuous
                   vv
clus                STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  CCDC103 MUTATED          0        0         1         3         1        0
  CCDC103 WILD-TYPE        1        4        10        48         1        3
D69V3, multiclass
                   vv
clus                T1+T2 T3+T4
  CCDC103 MUTATED       0     5
  CCDC103 WILD-TYPE     6    61
D69V4, multiclass
       clus
vv      CCDC103 MUTATED CCDC103 WILD-TYPE
  T1+T2               0                 6
  T3+T4               5                61
D69V5, binary
                   cls
clus                 0  1
  CCDC103 MUTATED    1  4
  CCDC103 WILD-TYPE 16 50
[1] "tbl2"
                   cls
clus                [,1] [,2]
  CCDC103 MUTATED      1    4
  CCDC103 WILD-TYPE   16   50
   clus
vv  CCDC103 MUTATED CCDC103 WILD-TYPE
  0               1                16
  1               4                50
                   vv
clus                M0 M1 MX
  CCDC103 MUTATED    3  0  2
  CCDC103 WILD-TYPE 36  3 28
D69V6, multiclass
    clus
vv   CCDC103 MUTATED CCDC103 WILD-TYPE
  M0               3                36
  M1               0                 3
  MX               2                28
D69V7, binary
                   cls
clus                 0  1
  CCDC103 MUTATED    4  1
  CCDC103 WILD-TYPE 32 35
[1] "tbl2"
                   cls
clus                [,1] [,2]
  CCDC103 MUTATED      4    1
  CCDC103 WILD-TYPE   32   35
        clus
vv       CCDC103 MUTATED CCDC103 WILD-TYPE
  FEMALE               4                32
  MALE                 1                35
                   vv
clus                PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  CCDC103 MUTATED                                     5
  CCDC103 WILD-TYPE                                  60
                   vv
clus                PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  CCDC103 MUTATED                                       0
  CCDC103 WILD-TYPE                                     4
                   vv
clus                PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  CCDC103 MUTATED                                                  0
  CCDC103 WILD-TYPE                                                2
D69V8, multiclass
                                                  clus
vv                                                 CCDC103 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                            5
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                          0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA               0
                                                  clus
vv                                                 CCDC103 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                             60
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                            4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                 2
D69V9, continuous
[1] "Remove cluster labels:" "CCDC103 MUTATED"       
clus
  CCDC103 MUTATED CCDC103 WILD-TYPE 
                2                20 
       TCGA-F2-6880        TCGA-FB-A4P6        TCGA-FB-A5VM        TCGA-FB-A78T 
"CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" 
       TCGA-FB-A7DR        TCGA-H6-8124        TCGA-H6-A45N        TCGA-H8-A6C1 
"CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" 
       TCGA-IB-7644        TCGA-IB-7649        TCGA-IB-7651        TCGA-IB-7885 
"CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" 
       TCGA-IB-7886        TCGA-IB-7887        TCGA-IB-7891        TCGA-IB-8127 
"CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" 
       TCGA-IB-A5SS        TCGA-IB-A6UG        TCGA-LB-A7SX        TCGA-OE-A75W 
"CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" 
D69V10, continuous
[1] "Remove cluster labels:" "CCDC103 MUTATED"       
clus
  CCDC103 MUTATED CCDC103 WILD-TYPE 
                2                17 
       TCGA-FB-A4P6        TCGA-FB-A5VM        TCGA-FB-A78T        TCGA-FB-A7DR 
"CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" 
       TCGA-H6-8124        TCGA-H8-A6C1        TCGA-IB-7644        TCGA-IB-7649 
"CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" 
       TCGA-IB-7651        TCGA-IB-7885        TCGA-IB-7886        TCGA-IB-7891 
"CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" 
       TCGA-IB-8127        TCGA-IB-A5SS        TCGA-IB-A6UG        TCGA-LB-A7SX 
"CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" "CCDC103 WILD-TYPE" 
       TCGA-OE-A75W 
"CCDC103 WILD-TYPE" 
                   vv
clus                R0 R1 RX
  CCDC103 MUTATED    3  2  0
  CCDC103 WILD-TYPE 39 22  2
D69V11, multiclass
    clus
vv   CCDC103 MUTATED CCDC103 WILD-TYPE
  R0               3                39
  R1               2                22
  RX               0                 2
D69V12, continuous

Clustering(70) Variable = CHGA MUTATION ANALYSIS
D70V1, survival
                sevent
clus2             0  1
  CHGA MUTATED    5  5
  CHGA WILD-TYPE 35 24
  CHGA MUTATED CHGA WILD-TYPE 
            10             59 
  CHGA MUTATED CHGA WILD-TYPE 
             5             24 
$`CHGA MUTATED`
TCGA-F2-6879 TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-8005 
       10.98         7.89         0.92         0.13         0.26         3.95 
TCGA-HZ-A49G TCGA-IB-7646 TCGA-IB-7651 TCGA-IB-7888 
        0.76         4.77        19.82        43.79 

$`CHGA WILD-TYPE`
TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H TCGA-FB-A4P5 
        9.70        11.84         7.10         5.03        19.27         0.13 
TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR TCGA-FZ-5920 
       11.93        12.66         2.47         0.03         5.46         2.01 
TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7919 
       36.20        20.81        12.89         7.66        13.02         0.66 
TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 
       12.13        11.87         0.26         0.62         0.79         0.69 
TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49H TCGA-HZ-A4BH 
        0.92         0.53         0.16         2.99         0.95         6.38 
TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7652 
        1.51        11.41        49.38        21.90        15.35        15.65 
TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 
       27.98         4.04         3.62        15.81        19.66        16.04 
TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP 
        3.85        15.98         0.56        17.16        10.82         9.86 
TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W 
        7.20        15.12         0.26         1.35         4.18         3.62 
TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
        8.12        13.68        16.80        14.14        18.67 

  CHGA MUTATED CHGA WILD-TYPE 
          0.13           0.03 
  CHGA MUTATED CHGA WILD-TYPE 
         43.79          49.38 
  CHGA MUTATED CHGA WILD-TYPE 
          4.36           8.12 
[1] "0.1 - 43.8 (4.4)" "0.0 - 49.4 (8.1)"
    TCGA-F2-6879     TCGA-F2-6880     TCGA-F2-7273     TCGA-F2-7276 
  "CHGA MUTATED" "CHGA WILD-TYPE" "CHGA WILD-TYPE" "CHGA WILD-TYPE" 
    TCGA-F2-A44G     TCGA-F2-A44H     TCGA-FB-A4P5     TCGA-FB-A4P6 
"CHGA WILD-TYPE" "CHGA WILD-TYPE" "CHGA WILD-TYPE" "CHGA WILD-TYPE" 
    TCGA-FB-A545     TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-FB-A7DR 
"CHGA WILD-TYPE" "CHGA WILD-TYPE" "CHGA WILD-TYPE" "CHGA WILD-TYPE" 
    TCGA-FZ-5920     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-H6-8124 
"CHGA WILD-TYPE" "CHGA WILD-TYPE" "CHGA WILD-TYPE" "CHGA WILD-TYPE" 
    TCGA-H6-A45N     TCGA-H8-A6C1     TCGA-HZ-7289     TCGA-HZ-7918 
"CHGA WILD-TYPE" "CHGA WILD-TYPE"   "CHGA MUTATED"   "CHGA MUTATED" 
    TCGA-HZ-7919     TCGA-HZ-7922     TCGA-HZ-7923     TCGA-HZ-7924 
"CHGA WILD-TYPE"   "CHGA MUTATED"   "CHGA MUTATED" "CHGA WILD-TYPE" 
    TCGA-HZ-7925     TCGA-HZ-7926     TCGA-HZ-8001     TCGA-HZ-8002 
"CHGA WILD-TYPE" "CHGA WILD-TYPE" "CHGA WILD-TYPE" "CHGA WILD-TYPE" 
    TCGA-HZ-8003     TCGA-HZ-8005     TCGA-HZ-8315     TCGA-HZ-8317 
"CHGA WILD-TYPE"   "CHGA MUTATED" "CHGA WILD-TYPE" "CHGA WILD-TYPE" 
    TCGA-HZ-8636     TCGA-HZ-8638     TCGA-HZ-A49G     TCGA-HZ-A49H 
"CHGA WILD-TYPE" "CHGA WILD-TYPE"   "CHGA MUTATED" "CHGA WILD-TYPE" 
    TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-IB-7644     TCGA-IB-7645 
"CHGA WILD-TYPE" "CHGA WILD-TYPE" "CHGA WILD-TYPE" "CHGA WILD-TYPE" 
    TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7651 
  "CHGA MUTATED" "CHGA WILD-TYPE" "CHGA WILD-TYPE"   "CHGA MUTATED" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887 
"CHGA WILD-TYPE" "CHGA WILD-TYPE" "CHGA WILD-TYPE" "CHGA WILD-TYPE" 
    TCGA-IB-7888     TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891 
  "CHGA MUTATED" "CHGA WILD-TYPE" "CHGA WILD-TYPE" "CHGA WILD-TYPE" 
    TCGA-IB-7893     TCGA-IB-7897     TCGA-IB-8126     TCGA-IB-8127 
"CHGA WILD-TYPE" "CHGA WILD-TYPE" "CHGA WILD-TYPE" "CHGA WILD-TYPE" 
    TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS 
"CHGA WILD-TYPE" "CHGA WILD-TYPE" "CHGA WILD-TYPE" "CHGA WILD-TYPE" 
    TCGA-IB-A5ST     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
"CHGA WILD-TYPE" "CHGA WILD-TYPE" "CHGA WILD-TYPE" "CHGA WILD-TYPE" 
    TCGA-PZ-A5RE     TCGA-Q3-A5QY     TCGA-US-A779     TCGA-US-A77E 
"CHGA WILD-TYPE" "CHGA WILD-TYPE" "CHGA WILD-TYPE" "CHGA WILD-TYPE" 
    TCGA-US-A77J 
"CHGA WILD-TYPE" 
    TCGA-F2-6879     TCGA-F2-6880     TCGA-F2-7273     TCGA-F2-7276 
  "CHGA MUTATED" "CHGA WILD-TYPE" "CHGA WILD-TYPE" "CHGA WILD-TYPE" 
    TCGA-F2-A44G     TCGA-F2-A44H     TCGA-FB-A4P5     TCGA-FB-A4P6 
"CHGA WILD-TYPE" "CHGA WILD-TYPE" "CHGA WILD-TYPE" "CHGA WILD-TYPE" 
    TCGA-FB-A545     TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-FB-A7DR 
"CHGA WILD-TYPE" "CHGA WILD-TYPE" "CHGA WILD-TYPE" "CHGA WILD-TYPE" 
    TCGA-FZ-5920     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-H6-8124 
"CHGA WILD-TYPE" "CHGA WILD-TYPE" "CHGA WILD-TYPE" "CHGA WILD-TYPE" 
    TCGA-H6-A45N     TCGA-H8-A6C1     TCGA-HZ-7289     TCGA-HZ-7918 
"CHGA WILD-TYPE" "CHGA WILD-TYPE"   "CHGA MUTATED"   "CHGA MUTATED" 
    TCGA-HZ-7919     TCGA-HZ-7922     TCGA-HZ-7923     TCGA-HZ-7924 
"CHGA WILD-TYPE"   "CHGA MUTATED"   "CHGA MUTATED" "CHGA WILD-TYPE" 
    TCGA-HZ-7925     TCGA-HZ-7926     TCGA-HZ-8001     TCGA-HZ-8002 
"CHGA WILD-TYPE" "CHGA WILD-TYPE" "CHGA WILD-TYPE" "CHGA WILD-TYPE" 
    TCGA-HZ-8003     TCGA-HZ-8005     TCGA-HZ-8315     TCGA-HZ-8317 
"CHGA WILD-TYPE"   "CHGA MUTATED" "CHGA WILD-TYPE" "CHGA WILD-TYPE" 
    TCGA-HZ-8636     TCGA-HZ-8638     TCGA-HZ-A49G     TCGA-HZ-A49H 
"CHGA WILD-TYPE" "CHGA WILD-TYPE"   "CHGA MUTATED" "CHGA WILD-TYPE" 
    TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-IB-7644     TCGA-IB-7645 
"CHGA WILD-TYPE" "CHGA WILD-TYPE" "CHGA WILD-TYPE" "CHGA WILD-TYPE" 
    TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7651 
  "CHGA MUTATED" "CHGA WILD-TYPE" "CHGA WILD-TYPE"   "CHGA MUTATED" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887 
"CHGA WILD-TYPE" "CHGA WILD-TYPE" "CHGA WILD-TYPE" "CHGA WILD-TYPE" 
    TCGA-IB-7888     TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891 
  "CHGA MUTATED" "CHGA WILD-TYPE" "CHGA WILD-TYPE" "CHGA WILD-TYPE" 
    TCGA-IB-7893     TCGA-IB-7897     TCGA-IB-8126     TCGA-IB-8127 
"CHGA WILD-TYPE" "CHGA WILD-TYPE" "CHGA WILD-TYPE" "CHGA WILD-TYPE" 
    TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS 
"CHGA WILD-TYPE" "CHGA WILD-TYPE" "CHGA WILD-TYPE" "CHGA WILD-TYPE" 
    TCGA-IB-A5ST     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
"CHGA WILD-TYPE" "CHGA WILD-TYPE" "CHGA WILD-TYPE" "CHGA WILD-TYPE" 
    TCGA-PZ-A5RE     TCGA-Q3-A5QY     TCGA-US-A779     TCGA-US-A77E 
"CHGA WILD-TYPE" "CHGA WILD-TYPE" "CHGA WILD-TYPE" "CHGA WILD-TYPE" 
    TCGA-US-A77J 
"CHGA WILD-TYPE" 
    TCGA-F2-6879     TCGA-F2-6880     TCGA-F2-7273     TCGA-F2-7276 
  "CHGA MUTATED" "CHGA WILD-TYPE" "CHGA WILD-TYPE" "CHGA WILD-TYPE" 
    TCGA-F2-A44G     TCGA-F2-A44H     TCGA-FB-A4P5     TCGA-FB-A4P6 
"CHGA WILD-TYPE" "CHGA WILD-TYPE" "CHGA WILD-TYPE" "CHGA WILD-TYPE" 
    TCGA-FB-A545     TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-FB-A7DR 
"CHGA WILD-TYPE" "CHGA WILD-TYPE" "CHGA WILD-TYPE" "CHGA WILD-TYPE" 
    TCGA-FZ-5920     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-H6-8124 
"CHGA WILD-TYPE" "CHGA WILD-TYPE" "CHGA WILD-TYPE" "CHGA WILD-TYPE" 
    TCGA-H6-A45N     TCGA-H8-A6C1     TCGA-HZ-7289     TCGA-HZ-7918 
"CHGA WILD-TYPE" "CHGA WILD-TYPE"   "CHGA MUTATED"   "CHGA MUTATED" 
    TCGA-HZ-7919     TCGA-HZ-7922     TCGA-HZ-7923     TCGA-HZ-7924 
"CHGA WILD-TYPE"   "CHGA MUTATED"   "CHGA MUTATED" "CHGA WILD-TYPE" 
    TCGA-HZ-7925     TCGA-HZ-7926     TCGA-HZ-8001     TCGA-HZ-8002 
"CHGA WILD-TYPE" "CHGA WILD-TYPE" "CHGA WILD-TYPE" "CHGA WILD-TYPE" 
    TCGA-HZ-8003     TCGA-HZ-8005     TCGA-HZ-8315     TCGA-HZ-8317 
"CHGA WILD-TYPE"   "CHGA MUTATED" "CHGA WILD-TYPE" "CHGA WILD-TYPE" 
    TCGA-HZ-8636     TCGA-HZ-8638     TCGA-HZ-A49G     TCGA-HZ-A49H 
"CHGA WILD-TYPE" "CHGA WILD-TYPE"   "CHGA MUTATED" "CHGA WILD-TYPE" 
    TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-IB-7644     TCGA-IB-7645 
"CHGA WILD-TYPE" "CHGA WILD-TYPE" "CHGA WILD-TYPE" "CHGA WILD-TYPE" 
    TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7651 
  "CHGA MUTATED" "CHGA WILD-TYPE" "CHGA WILD-TYPE"   "CHGA MUTATED" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887 
"CHGA WILD-TYPE" "CHGA WILD-TYPE" "CHGA WILD-TYPE" "CHGA WILD-TYPE" 
    TCGA-IB-7888     TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891 
  "CHGA MUTATED" "CHGA WILD-TYPE" "CHGA WILD-TYPE" "CHGA WILD-TYPE" 
    TCGA-IB-7893     TCGA-IB-7897     TCGA-IB-8126     TCGA-IB-8127 
"CHGA WILD-TYPE" "CHGA WILD-TYPE" "CHGA WILD-TYPE" "CHGA WILD-TYPE" 
    TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS 
"CHGA WILD-TYPE" "CHGA WILD-TYPE" "CHGA WILD-TYPE" "CHGA WILD-TYPE" 
    TCGA-IB-A5ST     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
"CHGA WILD-TYPE" "CHGA WILD-TYPE" "CHGA WILD-TYPE" "CHGA WILD-TYPE" 
    TCGA-PZ-A5RE     TCGA-Q3-A5QY     TCGA-US-A779     TCGA-US-A77E 
"CHGA WILD-TYPE" "CHGA WILD-TYPE" "CHGA WILD-TYPE" "CHGA WILD-TYPE" 
    TCGA-US-A77J 
"CHGA WILD-TYPE" 
[1] "hr=" "1.2"
D70V2, continuous
                vv
clus             STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  CHGA MUTATED          0        0         2         8         0        0
  CHGA WILD-TYPE        1        4         9        43         2        3
D70V3, multiclass
                vv
clus             T1+T2 T3+T4
  CHGA MUTATED       1     9
  CHGA WILD-TYPE     5    57
D70V4, multiclass
       clus
vv      CHGA MUTATED CHGA WILD-TYPE
  T1+T2            1              5
  T3+T4            9             57
D70V5, binary
                cls
clus              0  1
  CHGA MUTATED    2  8
  CHGA WILD-TYPE 15 46
[1] "tbl2"
                cls
clus             [,1] [,2]
  CHGA MUTATED      2    8
  CHGA WILD-TYPE   15   46
   clus
vv  CHGA MUTATED CHGA WILD-TYPE
  0            2             15
  1            8             46
                vv
clus             M0 M1 MX
  CHGA MUTATED    5  0  5
  CHGA WILD-TYPE 34  3 25
D70V6, multiclass
    clus
vv   CHGA MUTATED CHGA WILD-TYPE
  M0            5             34
  M1            0              3
  MX            5             25
D70V7, binary
                cls
clus              0  1
  CHGA MUTATED    4  6
  CHGA WILD-TYPE 32 30
[1] "tbl2"
                cls
clus             [,1] [,2]
  CHGA MUTATED      4    6
  CHGA WILD-TYPE   32   30
        clus
vv       CHGA MUTATED CHGA WILD-TYPE
  FEMALE            4             32
  MALE              6             30
                vv
clus             PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  CHGA MUTATED                                     8
  CHGA WILD-TYPE                                  57
                vv
clus             PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  CHGA MUTATED                                       1
  CHGA WILD-TYPE                                     3
                vv
clus             PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  CHGA MUTATED                                                  0
  CHGA WILD-TYPE                                                2
D70V8, multiclass
                                                  clus
vv                                                 CHGA MUTATED CHGA WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                         8             57
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                       1              3
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA            0              2
D70V9, continuous
[1] "Remove cluster labels:" "CHGA MUTATED"          
clus
  CHGA MUTATED CHGA WILD-TYPE 
             1             21 
    TCGA-F2-6880     TCGA-FB-A4P5     TCGA-FB-A4P6     TCGA-FB-A5VM 
"CHGA WILD-TYPE" "CHGA WILD-TYPE" "CHGA WILD-TYPE" "CHGA WILD-TYPE" 
    TCGA-FB-A78T     TCGA-FB-A7DR     TCGA-H6-8124     TCGA-H6-A45N 
"CHGA WILD-TYPE" "CHGA WILD-TYPE" "CHGA WILD-TYPE" "CHGA WILD-TYPE" 
    TCGA-H8-A6C1     TCGA-IB-7644     TCGA-IB-7649     TCGA-IB-7885 
"CHGA WILD-TYPE" "CHGA WILD-TYPE" "CHGA WILD-TYPE" "CHGA WILD-TYPE" 
    TCGA-IB-7886     TCGA-IB-7887     TCGA-IB-7891     TCGA-IB-8126 
"CHGA WILD-TYPE" "CHGA WILD-TYPE" "CHGA WILD-TYPE" "CHGA WILD-TYPE" 
    TCGA-IB-8127     TCGA-IB-A5SS     TCGA-IB-A6UG     TCGA-LB-A7SX 
"CHGA WILD-TYPE" "CHGA WILD-TYPE" "CHGA WILD-TYPE" "CHGA WILD-TYPE" 
    TCGA-OE-A75W 
"CHGA WILD-TYPE" 
D70V10, continuous
[1] "Remove cluster labels:" "CHGA MUTATED"          
clus
  CHGA MUTATED CHGA WILD-TYPE 
             1             18 
    TCGA-FB-A4P5     TCGA-FB-A4P6     TCGA-FB-A5VM     TCGA-FB-A78T 
"CHGA WILD-TYPE" "CHGA WILD-TYPE" "CHGA WILD-TYPE" "CHGA WILD-TYPE" 
    TCGA-FB-A7DR     TCGA-H6-8124     TCGA-H8-A6C1     TCGA-IB-7644 
"CHGA WILD-TYPE" "CHGA WILD-TYPE" "CHGA WILD-TYPE" "CHGA WILD-TYPE" 
    TCGA-IB-7649     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7891 
"CHGA WILD-TYPE" "CHGA WILD-TYPE" "CHGA WILD-TYPE" "CHGA WILD-TYPE" 
    TCGA-IB-8126     TCGA-IB-8127     TCGA-IB-A5SS     TCGA-IB-A6UG 
"CHGA WILD-TYPE" "CHGA WILD-TYPE" "CHGA WILD-TYPE" "CHGA WILD-TYPE" 
    TCGA-LB-A7SX     TCGA-OE-A75W 
"CHGA WILD-TYPE" "CHGA WILD-TYPE" 
                vv
clus             R0 R1 RX
  CHGA MUTATED    6  3  1
  CHGA WILD-TYPE 36 21  1
D70V11, multiclass
    clus
vv   CHGA MUTATED CHGA WILD-TYPE
  R0            6             36
  R1            3             21
  RX            1              1
D70V12, continuous

Clustering(71) Variable = KDM2A MUTATION ANALYSIS
D71V1, survival
                 sevent
clus2              0  1
  KDM2A MUTATED    5  4
  KDM2A WILD-TYPE 35 25
  KDM2A MUTATED KDM2A WILD-TYPE 
              9              60 
  KDM2A MUTATED KDM2A WILD-TYPE 
              4              25 
$`KDM2A MUTATED`
TCGA-H6-8124 TCGA-HZ-8005 TCGA-HZ-8315 TCGA-IB-7647 TCGA-IB-7651 TCGA-IB-7652 
       12.89         3.95         0.92        21.90        19.82        15.65 
TCGA-IB-7886 TCGA-IB-7891 TCGA-IB-8127 
        4.04        16.04        17.16 

$`KDM2A WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P5 TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR 
        0.13        11.93        12.66         2.47         0.03         5.46 
TCGA-FZ-5920 TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7289 
        2.01        36.20        20.81         7.66        13.02         7.89 
TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 
        0.92         0.66         0.13         0.26        12.13        11.87 
TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8317 TCGA-HZ-8636 
        0.26         0.62         0.79         0.69         0.53         0.16 
TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 
        2.99         0.76         0.95         6.38         1.51        11.41 
TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7649 TCGA-IB-7885 TCGA-IB-7887 TCGA-IB-7888 
       49.38         4.77        15.35        27.98         3.62        43.79 
TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-A5SO 
       15.81        19.66         3.85        15.98         0.56        10.82 
TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX 
        9.86         7.20        15.12         0.26         1.35         4.18 
TCGA-OE-A75W TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
        3.62         8.12        13.68        16.80        14.14        18.67 

  KDM2A MUTATED KDM2A WILD-TYPE 
           0.92            0.03 
  KDM2A MUTATED KDM2A WILD-TYPE 
          21.90           49.38 
  KDM2A MUTATED KDM2A WILD-TYPE 
          15.65            7.15 
[1] "0.9 - 21.9 (15.7)" "0.0 - 49.4 (7.2)" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"KDM2A WILD-TYPE" "KDM2A WILD-TYPE" "KDM2A WILD-TYPE" "KDM2A WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"KDM2A WILD-TYPE" "KDM2A WILD-TYPE" "KDM2A WILD-TYPE" "KDM2A WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"KDM2A WILD-TYPE" "KDM2A WILD-TYPE" "KDM2A WILD-TYPE" "KDM2A WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"KDM2A WILD-TYPE" "KDM2A WILD-TYPE" "KDM2A WILD-TYPE"   "KDM2A MUTATED" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"KDM2A WILD-TYPE" "KDM2A WILD-TYPE" "KDM2A WILD-TYPE" "KDM2A WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"KDM2A WILD-TYPE" "KDM2A WILD-TYPE" "KDM2A WILD-TYPE" "KDM2A WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"KDM2A WILD-TYPE" "KDM2A WILD-TYPE" "KDM2A WILD-TYPE" "KDM2A WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"KDM2A WILD-TYPE"   "KDM2A MUTATED"   "KDM2A MUTATED" "KDM2A WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"KDM2A WILD-TYPE" "KDM2A WILD-TYPE" "KDM2A WILD-TYPE" "KDM2A WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"KDM2A WILD-TYPE" "KDM2A WILD-TYPE" "KDM2A WILD-TYPE" "KDM2A WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"KDM2A WILD-TYPE"   "KDM2A MUTATED" "KDM2A WILD-TYPE"   "KDM2A MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
  "KDM2A MUTATED" "KDM2A WILD-TYPE"   "KDM2A MUTATED" "KDM2A WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"KDM2A WILD-TYPE" "KDM2A WILD-TYPE" "KDM2A WILD-TYPE"   "KDM2A MUTATED" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"KDM2A WILD-TYPE" "KDM2A WILD-TYPE" "KDM2A WILD-TYPE"   "KDM2A MUTATED" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"KDM2A WILD-TYPE" "KDM2A WILD-TYPE" "KDM2A WILD-TYPE" "KDM2A WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"KDM2A WILD-TYPE" "KDM2A WILD-TYPE" "KDM2A WILD-TYPE" "KDM2A WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"KDM2A WILD-TYPE" "KDM2A WILD-TYPE" "KDM2A WILD-TYPE" "KDM2A WILD-TYPE" 
     TCGA-US-A77J 
"KDM2A WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"KDM2A WILD-TYPE" "KDM2A WILD-TYPE" "KDM2A WILD-TYPE" "KDM2A WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"KDM2A WILD-TYPE" "KDM2A WILD-TYPE" "KDM2A WILD-TYPE" "KDM2A WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"KDM2A WILD-TYPE" "KDM2A WILD-TYPE" "KDM2A WILD-TYPE" "KDM2A WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"KDM2A WILD-TYPE" "KDM2A WILD-TYPE" "KDM2A WILD-TYPE"   "KDM2A MUTATED" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"KDM2A WILD-TYPE" "KDM2A WILD-TYPE" "KDM2A WILD-TYPE" "KDM2A WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"KDM2A WILD-TYPE" "KDM2A WILD-TYPE" "KDM2A WILD-TYPE" "KDM2A WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"KDM2A WILD-TYPE" "KDM2A WILD-TYPE" "KDM2A WILD-TYPE" "KDM2A WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"KDM2A WILD-TYPE"   "KDM2A MUTATED"   "KDM2A MUTATED" "KDM2A WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"KDM2A WILD-TYPE" "KDM2A WILD-TYPE" "KDM2A WILD-TYPE" "KDM2A WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"KDM2A WILD-TYPE" "KDM2A WILD-TYPE" "KDM2A WILD-TYPE" "KDM2A WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"KDM2A WILD-TYPE"   "KDM2A MUTATED" "KDM2A WILD-TYPE"   "KDM2A MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
  "KDM2A MUTATED" "KDM2A WILD-TYPE"   "KDM2A MUTATED" "KDM2A WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"KDM2A WILD-TYPE" "KDM2A WILD-TYPE" "KDM2A WILD-TYPE"   "KDM2A MUTATED" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"KDM2A WILD-TYPE" "KDM2A WILD-TYPE" "KDM2A WILD-TYPE"   "KDM2A MUTATED" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"KDM2A WILD-TYPE" "KDM2A WILD-TYPE" "KDM2A WILD-TYPE" "KDM2A WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"KDM2A WILD-TYPE" "KDM2A WILD-TYPE" "KDM2A WILD-TYPE" "KDM2A WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"KDM2A WILD-TYPE" "KDM2A WILD-TYPE" "KDM2A WILD-TYPE" "KDM2A WILD-TYPE" 
     TCGA-US-A77J 
"KDM2A WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"KDM2A WILD-TYPE" "KDM2A WILD-TYPE" "KDM2A WILD-TYPE" "KDM2A WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"KDM2A WILD-TYPE" "KDM2A WILD-TYPE" "KDM2A WILD-TYPE" "KDM2A WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"KDM2A WILD-TYPE" "KDM2A WILD-TYPE" "KDM2A WILD-TYPE" "KDM2A WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"KDM2A WILD-TYPE" "KDM2A WILD-TYPE" "KDM2A WILD-TYPE"   "KDM2A MUTATED" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"KDM2A WILD-TYPE" "KDM2A WILD-TYPE" "KDM2A WILD-TYPE" "KDM2A WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"KDM2A WILD-TYPE" "KDM2A WILD-TYPE" "KDM2A WILD-TYPE" "KDM2A WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"KDM2A WILD-TYPE" "KDM2A WILD-TYPE" "KDM2A WILD-TYPE" "KDM2A WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"KDM2A WILD-TYPE"   "KDM2A MUTATED"   "KDM2A MUTATED" "KDM2A WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"KDM2A WILD-TYPE" "KDM2A WILD-TYPE" "KDM2A WILD-TYPE" "KDM2A WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"KDM2A WILD-TYPE" "KDM2A WILD-TYPE" "KDM2A WILD-TYPE" "KDM2A WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"KDM2A WILD-TYPE"   "KDM2A MUTATED" "KDM2A WILD-TYPE"   "KDM2A MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
  "KDM2A MUTATED" "KDM2A WILD-TYPE"   "KDM2A MUTATED" "KDM2A WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"KDM2A WILD-TYPE" "KDM2A WILD-TYPE" "KDM2A WILD-TYPE"   "KDM2A MUTATED" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"KDM2A WILD-TYPE" "KDM2A WILD-TYPE" "KDM2A WILD-TYPE"   "KDM2A MUTATED" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"KDM2A WILD-TYPE" "KDM2A WILD-TYPE" "KDM2A WILD-TYPE" "KDM2A WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"KDM2A WILD-TYPE" "KDM2A WILD-TYPE" "KDM2A WILD-TYPE" "KDM2A WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"KDM2A WILD-TYPE" "KDM2A WILD-TYPE" "KDM2A WILD-TYPE" "KDM2A WILD-TYPE" 
     TCGA-US-A77J 
"KDM2A WILD-TYPE" 
[1] "hr=" "1.4"
D71V2, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  KDM2A MUTATED          0        0         1         8         0        0
  KDM2A WILD-TYPE        1        4        10        43         2        3
D71V3, multiclass
                 vv
clus              T1+T2 T3+T4
  KDM2A MUTATED       0     9
  KDM2A WILD-TYPE     6    57
D71V4, multiclass
       clus
vv      KDM2A MUTATED KDM2A WILD-TYPE
  T1+T2             0               6
  T3+T4             9              57
D71V5, binary
                 cls
clus               0  1
  KDM2A MUTATED    1  8
  KDM2A WILD-TYPE 16 46
[1] "tbl2"
                 cls
clus              [,1] [,2]
  KDM2A MUTATED      1    8
  KDM2A WILD-TYPE   16   46
   clus
vv  KDM2A MUTATED KDM2A WILD-TYPE
  0             1              16
  1             8              46
                 vv
clus              M0 M1 MX
  KDM2A MUTATED    7  0  2
  KDM2A WILD-TYPE 32  3 28
D71V6, multiclass
    clus
vv   KDM2A MUTATED KDM2A WILD-TYPE
  M0             7              32
  M1             0               3
  MX             2              28
D71V7, binary
                 cls
clus               0  1
  KDM2A MUTATED    5  4
  KDM2A WILD-TYPE 31 32
[1] "tbl2"
                 cls
clus              [,1] [,2]
  KDM2A MUTATED      5    4
  KDM2A WILD-TYPE   31   32
        clus
vv       KDM2A MUTATED KDM2A WILD-TYPE
  FEMALE             5              31
  MALE               4              32
                 vv
clus              PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  KDM2A MUTATED                                     9
  KDM2A WILD-TYPE                                  56
                 vv
clus              PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  KDM2A MUTATED                                       0
  KDM2A WILD-TYPE                                     4
                 vv
clus              PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  KDM2A MUTATED                                                  0
  KDM2A WILD-TYPE                                                2
D71V8, multiclass
                                                  clus
vv                                                 KDM2A MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                          9
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                        0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA             0
                                                  clus
vv                                                 KDM2A WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                           56
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                          4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA               2
D71V9, continuous
D71V10, continuous
                 vv
clus              R0 R1 RX
  KDM2A MUTATED    3  6  0
  KDM2A WILD-TYPE 39 18  2
D71V11, multiclass
    clus
vv   KDM2A MUTATED KDM2A WILD-TYPE
  R0             3              39
  R1             6              18
  RX             0               2
D71V12, continuous

Clustering(72) Variable = OLIG3 MUTATION ANALYSIS
D72V1, survival
                 sevent
clus2              0  1
  OLIG3 MUTATED    5  5
  OLIG3 WILD-TYPE 35 24
  OLIG3 MUTATED OLIG3 WILD-TYPE 
             10              59 
  OLIG3 MUTATED OLIG3 WILD-TYPE 
              5              24 
$`OLIG3 MUTATED`
TCGA-HZ-7919 TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-8317 TCGA-IB-7644 TCGA-IB-7651 
        0.66        12.13        11.87         0.53        11.41        19.82 
TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7888 TCGA-IB-7893 
       27.98         4.04        43.79         3.85 

$`OLIG3 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P5 TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR 
        0.13        11.93        12.66         2.47         0.03         5.46 
TCGA-FZ-5920 TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 
        2.01        36.20        20.81        12.89         7.66        13.02 
TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7926 TCGA-HZ-8001 
        7.89         0.92         0.13         0.26         0.26         0.62 
TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8636 TCGA-HZ-8638 
        0.79         0.69         3.95         0.92         0.16         2.99 
TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7645 TCGA-IB-7646 
        0.76         0.95         6.38         1.51        49.38         4.77 
TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7652 TCGA-IB-7887 TCGA-IB-7889 TCGA-IB-7890 
       21.90        15.35        15.65         3.62        15.81        19.66 
TCGA-IB-7891 TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP 
       16.04        15.98         0.56        17.16        10.82         9.86 
TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W 
        7.20        15.12         0.26         1.35         4.18         3.62 
TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
        8.12        13.68        16.80        14.14        18.67 

  OLIG3 MUTATED OLIG3 WILD-TYPE 
           0.53            0.03 
  OLIG3 MUTATED OLIG3 WILD-TYPE 
          43.79           49.38 
  OLIG3 MUTATED OLIG3 WILD-TYPE 
          11.64            7.20 
[1] "0.5 - 43.8 (11.6)" "0.0 - 49.4 (7.2)" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"OLIG3 WILD-TYPE" "OLIG3 WILD-TYPE" "OLIG3 WILD-TYPE" "OLIG3 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"OLIG3 WILD-TYPE" "OLIG3 WILD-TYPE" "OLIG3 WILD-TYPE" "OLIG3 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"OLIG3 WILD-TYPE" "OLIG3 WILD-TYPE" "OLIG3 WILD-TYPE" "OLIG3 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"OLIG3 WILD-TYPE" "OLIG3 WILD-TYPE" "OLIG3 WILD-TYPE" "OLIG3 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"OLIG3 WILD-TYPE" "OLIG3 WILD-TYPE" "OLIG3 WILD-TYPE" "OLIG3 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
  "OLIG3 MUTATED" "OLIG3 WILD-TYPE" "OLIG3 WILD-TYPE"   "OLIG3 MUTATED" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
  "OLIG3 MUTATED" "OLIG3 WILD-TYPE" "OLIG3 WILD-TYPE" "OLIG3 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"OLIG3 WILD-TYPE" "OLIG3 WILD-TYPE" "OLIG3 WILD-TYPE"   "OLIG3 MUTATED" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"OLIG3 WILD-TYPE" "OLIG3 WILD-TYPE" "OLIG3 WILD-TYPE" "OLIG3 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"OLIG3 WILD-TYPE" "OLIG3 WILD-TYPE"   "OLIG3 MUTATED" "OLIG3 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"OLIG3 WILD-TYPE" "OLIG3 WILD-TYPE" "OLIG3 WILD-TYPE"   "OLIG3 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"OLIG3 WILD-TYPE"   "OLIG3 MUTATED"   "OLIG3 MUTATED" "OLIG3 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
  "OLIG3 MUTATED" "OLIG3 WILD-TYPE" "OLIG3 WILD-TYPE" "OLIG3 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
  "OLIG3 MUTATED" "OLIG3 WILD-TYPE" "OLIG3 WILD-TYPE" "OLIG3 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"OLIG3 WILD-TYPE" "OLIG3 WILD-TYPE" "OLIG3 WILD-TYPE" "OLIG3 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"OLIG3 WILD-TYPE" "OLIG3 WILD-TYPE" "OLIG3 WILD-TYPE" "OLIG3 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"OLIG3 WILD-TYPE" "OLIG3 WILD-TYPE" "OLIG3 WILD-TYPE" "OLIG3 WILD-TYPE" 
     TCGA-US-A77J 
"OLIG3 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"OLIG3 WILD-TYPE" "OLIG3 WILD-TYPE" "OLIG3 WILD-TYPE" "OLIG3 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"OLIG3 WILD-TYPE" "OLIG3 WILD-TYPE" "OLIG3 WILD-TYPE" "OLIG3 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"OLIG3 WILD-TYPE" "OLIG3 WILD-TYPE" "OLIG3 WILD-TYPE" "OLIG3 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"OLIG3 WILD-TYPE" "OLIG3 WILD-TYPE" "OLIG3 WILD-TYPE" "OLIG3 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"OLIG3 WILD-TYPE" "OLIG3 WILD-TYPE" "OLIG3 WILD-TYPE" "OLIG3 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
  "OLIG3 MUTATED" "OLIG3 WILD-TYPE" "OLIG3 WILD-TYPE"   "OLIG3 MUTATED" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
  "OLIG3 MUTATED" "OLIG3 WILD-TYPE" "OLIG3 WILD-TYPE" "OLIG3 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"OLIG3 WILD-TYPE" "OLIG3 WILD-TYPE" "OLIG3 WILD-TYPE"   "OLIG3 MUTATED" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"OLIG3 WILD-TYPE" "OLIG3 WILD-TYPE" "OLIG3 WILD-TYPE" "OLIG3 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"OLIG3 WILD-TYPE" "OLIG3 WILD-TYPE"   "OLIG3 MUTATED" "OLIG3 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"OLIG3 WILD-TYPE" "OLIG3 WILD-TYPE" "OLIG3 WILD-TYPE"   "OLIG3 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"OLIG3 WILD-TYPE"   "OLIG3 MUTATED"   "OLIG3 MUTATED" "OLIG3 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
  "OLIG3 MUTATED" "OLIG3 WILD-TYPE" "OLIG3 WILD-TYPE" "OLIG3 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
  "OLIG3 MUTATED" "OLIG3 WILD-TYPE" "OLIG3 WILD-TYPE" "OLIG3 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"OLIG3 WILD-TYPE" "OLIG3 WILD-TYPE" "OLIG3 WILD-TYPE" "OLIG3 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"OLIG3 WILD-TYPE" "OLIG3 WILD-TYPE" "OLIG3 WILD-TYPE" "OLIG3 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"OLIG3 WILD-TYPE" "OLIG3 WILD-TYPE" "OLIG3 WILD-TYPE" "OLIG3 WILD-TYPE" 
     TCGA-US-A77J 
"OLIG3 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"OLIG3 WILD-TYPE" "OLIG3 WILD-TYPE" "OLIG3 WILD-TYPE" "OLIG3 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"OLIG3 WILD-TYPE" "OLIG3 WILD-TYPE" "OLIG3 WILD-TYPE" "OLIG3 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"OLIG3 WILD-TYPE" "OLIG3 WILD-TYPE" "OLIG3 WILD-TYPE" "OLIG3 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"OLIG3 WILD-TYPE" "OLIG3 WILD-TYPE" "OLIG3 WILD-TYPE" "OLIG3 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"OLIG3 WILD-TYPE" "OLIG3 WILD-TYPE" "OLIG3 WILD-TYPE" "OLIG3 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
  "OLIG3 MUTATED" "OLIG3 WILD-TYPE" "OLIG3 WILD-TYPE"   "OLIG3 MUTATED" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
  "OLIG3 MUTATED" "OLIG3 WILD-TYPE" "OLIG3 WILD-TYPE" "OLIG3 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"OLIG3 WILD-TYPE" "OLIG3 WILD-TYPE" "OLIG3 WILD-TYPE"   "OLIG3 MUTATED" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"OLIG3 WILD-TYPE" "OLIG3 WILD-TYPE" "OLIG3 WILD-TYPE" "OLIG3 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"OLIG3 WILD-TYPE" "OLIG3 WILD-TYPE"   "OLIG3 MUTATED" "OLIG3 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"OLIG3 WILD-TYPE" "OLIG3 WILD-TYPE" "OLIG3 WILD-TYPE"   "OLIG3 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"OLIG3 WILD-TYPE"   "OLIG3 MUTATED"   "OLIG3 MUTATED" "OLIG3 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
  "OLIG3 MUTATED" "OLIG3 WILD-TYPE" "OLIG3 WILD-TYPE" "OLIG3 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
  "OLIG3 MUTATED" "OLIG3 WILD-TYPE" "OLIG3 WILD-TYPE" "OLIG3 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"OLIG3 WILD-TYPE" "OLIG3 WILD-TYPE" "OLIG3 WILD-TYPE" "OLIG3 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"OLIG3 WILD-TYPE" "OLIG3 WILD-TYPE" "OLIG3 WILD-TYPE" "OLIG3 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"OLIG3 WILD-TYPE" "OLIG3 WILD-TYPE" "OLIG3 WILD-TYPE" "OLIG3 WILD-TYPE" 
     TCGA-US-A77J 
"OLIG3 WILD-TYPE" 
[1] "hr=" "1.4"
D72V2, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  OLIG3 MUTATED          0        0         3         6         0        1
  OLIG3 WILD-TYPE        1        4         8        45         2        2
D72V3, multiclass
                 vv
clus              T1+T2 T3+T4
  OLIG3 MUTATED       0    10
  OLIG3 WILD-TYPE     6    56
D72V4, multiclass
       clus
vv      OLIG3 MUTATED OLIG3 WILD-TYPE
  T1+T2             0               6
  T3+T4            10              56
D72V5, binary
                 cls
clus               0  1
  OLIG3 MUTATED    3  7
  OLIG3 WILD-TYPE 14 47
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OLIG3 MUTATED      3    7
  OLIG3 WILD-TYPE   14   47
   clus
vv  OLIG3 MUTATED OLIG3 WILD-TYPE
  0             3              14
  1             7              47
                 vv
clus              M0 M1 MX
  OLIG3 MUTATED    6  1  3
  OLIG3 WILD-TYPE 33  2 27
D72V6, multiclass
    clus
vv   OLIG3 MUTATED OLIG3 WILD-TYPE
  M0             6              33
  M1             1               2
  MX             3              27
D72V7, binary
                 cls
clus               0  1
  OLIG3 MUTATED    7  3
  OLIG3 WILD-TYPE 29 33
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OLIG3 MUTATED      7    3
  OLIG3 WILD-TYPE   29   33
        clus
vv       OLIG3 MUTATED OLIG3 WILD-TYPE
  FEMALE             7              29
  MALE               3              33
                 vv
clus              PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  OLIG3 MUTATED                                    10
  OLIG3 WILD-TYPE                                  55
                 vv
clus              PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  OLIG3 MUTATED                                       0
  OLIG3 WILD-TYPE                                     4
                 vv
clus              PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  OLIG3 MUTATED                                                  0
  OLIG3 WILD-TYPE                                                2
D72V8, multiclass
                                                  clus
vv                                                 OLIG3 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                         10
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                        0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA             0
                                                  clus
vv                                                 OLIG3 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                           55
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                          4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA               2
D72V9, continuous
D72V10, continuous
                 vv
clus              R0 R1 RX
  OLIG3 MUTATED    6  4  0
  OLIG3 WILD-TYPE 36 20  2
D72V11, multiclass
    clus
vv   OLIG3 MUTATED OLIG3 WILD-TYPE
  R0             6              36
  R1             4              20
  RX             0               2
D72V12, continuous

Clustering(73) Variable = FOXP2 MUTATION ANALYSIS
D73V1, survival
                 sevent
clus2              0  1
  FOXP2 MUTATED    7 10
  FOXP2 WILD-TYPE 33 19
  FOXP2 MUTATED FOXP2 WILD-TYPE 
             17              52 
  FOXP2 MUTATED FOXP2 WILD-TYPE 
             10              19 
$`FOXP2 MUTATED`
TCGA-F2-6880 TCGA-F2-7273 TCGA-FB-A545 TCGA-FZ-5920 TCGA-HZ-8003 TCGA-HZ-8005 
        9.70        11.84        12.66         2.01         0.69         3.95 
TCGA-HZ-8315 TCGA-HZ-8638 TCGA-HZ-A4BH TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7646 
        0.92         2.99         6.38        11.41        49.38         4.77 
TCGA-IB-7651 TCGA-IB-7888 TCGA-IB-7893 TCGA-IB-7897 TCGA-Q3-A5QY 
       19.82        43.79         3.85        15.98        13.68 

$`FOXP2 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H TCGA-FB-A4P5 TCGA-FB-A4P6 
       10.98         7.10         5.03        19.27         0.13        11.93 
TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 
        2.47         0.03         5.46        36.20        20.81        12.89 
TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7922 
        7.66        13.02         7.89         0.92         0.66         0.13 
TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 
        0.26        12.13        11.87         0.26         0.62         0.79 
TCGA-HZ-8317 TCGA-HZ-8636 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BK TCGA-IB-7647 
        0.53         0.16         0.76         0.95         1.51        21.90 
TCGA-IB-7649 TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7889 
       15.35        15.65        27.98         4.04         3.62        15.81 
TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP 
       19.66        16.04         0.56        17.16        10.82         9.86 
TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W 
        7.20        15.12         0.26         1.35         4.18         3.62 
TCGA-PZ-A5RE TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
        8.12        16.80        14.14        18.67 

  FOXP2 MUTATED FOXP2 WILD-TYPE 
           0.69            0.03 
  FOXP2 MUTATED FOXP2 WILD-TYPE 
          49.38           36.20 
  FOXP2 MUTATED FOXP2 WILD-TYPE 
           9.70            7.43 
[1] "0.7 - 49.4 (9.7)" "0.0 - 36.2 (7.4)"
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"FOXP2 WILD-TYPE"   "FOXP2 MUTATED"   "FOXP2 MUTATED" "FOXP2 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"FOXP2 WILD-TYPE" "FOXP2 WILD-TYPE" "FOXP2 WILD-TYPE" "FOXP2 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
  "FOXP2 MUTATED" "FOXP2 WILD-TYPE" "FOXP2 WILD-TYPE" "FOXP2 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
  "FOXP2 MUTATED" "FOXP2 WILD-TYPE" "FOXP2 WILD-TYPE" "FOXP2 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"FOXP2 WILD-TYPE" "FOXP2 WILD-TYPE" "FOXP2 WILD-TYPE" "FOXP2 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"FOXP2 WILD-TYPE" "FOXP2 WILD-TYPE" "FOXP2 WILD-TYPE" "FOXP2 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"FOXP2 WILD-TYPE" "FOXP2 WILD-TYPE" "FOXP2 WILD-TYPE" "FOXP2 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
  "FOXP2 MUTATED"   "FOXP2 MUTATED"   "FOXP2 MUTATED" "FOXP2 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"FOXP2 WILD-TYPE"   "FOXP2 MUTATED" "FOXP2 WILD-TYPE" "FOXP2 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
  "FOXP2 MUTATED" "FOXP2 WILD-TYPE"   "FOXP2 MUTATED"   "FOXP2 MUTATED" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
  "FOXP2 MUTATED" "FOXP2 WILD-TYPE" "FOXP2 WILD-TYPE"   "FOXP2 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"FOXP2 WILD-TYPE" "FOXP2 WILD-TYPE" "FOXP2 WILD-TYPE" "FOXP2 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
  "FOXP2 MUTATED" "FOXP2 WILD-TYPE" "FOXP2 WILD-TYPE" "FOXP2 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
  "FOXP2 MUTATED"   "FOXP2 MUTATED" "FOXP2 WILD-TYPE" "FOXP2 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"FOXP2 WILD-TYPE" "FOXP2 WILD-TYPE" "FOXP2 WILD-TYPE" "FOXP2 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"FOXP2 WILD-TYPE" "FOXP2 WILD-TYPE" "FOXP2 WILD-TYPE" "FOXP2 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"FOXP2 WILD-TYPE"   "FOXP2 MUTATED" "FOXP2 WILD-TYPE" "FOXP2 WILD-TYPE" 
     TCGA-US-A77J 
"FOXP2 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"FOXP2 WILD-TYPE"   "FOXP2 MUTATED"   "FOXP2 MUTATED" "FOXP2 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"FOXP2 WILD-TYPE" "FOXP2 WILD-TYPE" "FOXP2 WILD-TYPE" "FOXP2 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
  "FOXP2 MUTATED" "FOXP2 WILD-TYPE" "FOXP2 WILD-TYPE" "FOXP2 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
  "FOXP2 MUTATED" "FOXP2 WILD-TYPE" "FOXP2 WILD-TYPE" "FOXP2 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"FOXP2 WILD-TYPE" "FOXP2 WILD-TYPE" "FOXP2 WILD-TYPE" "FOXP2 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"FOXP2 WILD-TYPE" "FOXP2 WILD-TYPE" "FOXP2 WILD-TYPE" "FOXP2 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"FOXP2 WILD-TYPE" "FOXP2 WILD-TYPE" "FOXP2 WILD-TYPE" "FOXP2 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
  "FOXP2 MUTATED"   "FOXP2 MUTATED"   "FOXP2 MUTATED" "FOXP2 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"FOXP2 WILD-TYPE"   "FOXP2 MUTATED" "FOXP2 WILD-TYPE" "FOXP2 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
  "FOXP2 MUTATED" "FOXP2 WILD-TYPE"   "FOXP2 MUTATED"   "FOXP2 MUTATED" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
  "FOXP2 MUTATED" "FOXP2 WILD-TYPE" "FOXP2 WILD-TYPE"   "FOXP2 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"FOXP2 WILD-TYPE" "FOXP2 WILD-TYPE" "FOXP2 WILD-TYPE" "FOXP2 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
  "FOXP2 MUTATED" "FOXP2 WILD-TYPE" "FOXP2 WILD-TYPE" "FOXP2 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
  "FOXP2 MUTATED"   "FOXP2 MUTATED" "FOXP2 WILD-TYPE" "FOXP2 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"FOXP2 WILD-TYPE" "FOXP2 WILD-TYPE" "FOXP2 WILD-TYPE" "FOXP2 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"FOXP2 WILD-TYPE" "FOXP2 WILD-TYPE" "FOXP2 WILD-TYPE" "FOXP2 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"FOXP2 WILD-TYPE"   "FOXP2 MUTATED" "FOXP2 WILD-TYPE" "FOXP2 WILD-TYPE" 
     TCGA-US-A77J 
"FOXP2 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"FOXP2 WILD-TYPE"   "FOXP2 MUTATED"   "FOXP2 MUTATED" "FOXP2 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"FOXP2 WILD-TYPE" "FOXP2 WILD-TYPE" "FOXP2 WILD-TYPE" "FOXP2 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
  "FOXP2 MUTATED" "FOXP2 WILD-TYPE" "FOXP2 WILD-TYPE" "FOXP2 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
  "FOXP2 MUTATED" "FOXP2 WILD-TYPE" "FOXP2 WILD-TYPE" "FOXP2 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"FOXP2 WILD-TYPE" "FOXP2 WILD-TYPE" "FOXP2 WILD-TYPE" "FOXP2 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"FOXP2 WILD-TYPE" "FOXP2 WILD-TYPE" "FOXP2 WILD-TYPE" "FOXP2 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"FOXP2 WILD-TYPE" "FOXP2 WILD-TYPE" "FOXP2 WILD-TYPE" "FOXP2 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
  "FOXP2 MUTATED"   "FOXP2 MUTATED"   "FOXP2 MUTATED" "FOXP2 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"FOXP2 WILD-TYPE"   "FOXP2 MUTATED" "FOXP2 WILD-TYPE" "FOXP2 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
  "FOXP2 MUTATED" "FOXP2 WILD-TYPE"   "FOXP2 MUTATED"   "FOXP2 MUTATED" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
  "FOXP2 MUTATED" "FOXP2 WILD-TYPE" "FOXP2 WILD-TYPE"   "FOXP2 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"FOXP2 WILD-TYPE" "FOXP2 WILD-TYPE" "FOXP2 WILD-TYPE" "FOXP2 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
  "FOXP2 MUTATED" "FOXP2 WILD-TYPE" "FOXP2 WILD-TYPE" "FOXP2 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
  "FOXP2 MUTATED"   "FOXP2 MUTATED" "FOXP2 WILD-TYPE" "FOXP2 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"FOXP2 WILD-TYPE" "FOXP2 WILD-TYPE" "FOXP2 WILD-TYPE" "FOXP2 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"FOXP2 WILD-TYPE" "FOXP2 WILD-TYPE" "FOXP2 WILD-TYPE" "FOXP2 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"FOXP2 WILD-TYPE"   "FOXP2 MUTATED" "FOXP2 WILD-TYPE" "FOXP2 WILD-TYPE" 
     TCGA-US-A77J 
"FOXP2 WILD-TYPE" 
[1] "hr=" "1"  
D73V2, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  FOXP2 MUTATED          1        1         3        12         0        1
  FOXP2 WILD-TYPE        0        3         8        39         2        2
D73V3, multiclass
                 vv
clus              T1+T2 T3+T4
  FOXP2 MUTATED       2    16
  FOXP2 WILD-TYPE     4    50
D73V4, multiclass
       clus
vv      FOXP2 MUTATED FOXP2 WILD-TYPE
  T1+T2             2               4
  T3+T4            16              50
D73V5, binary
                 cls
clus               0  1
  FOXP2 MUTATED    5 13
  FOXP2 WILD-TYPE 12 41
[1] "tbl2"
                 cls
clus              [,1] [,2]
  FOXP2 MUTATED      5   13
  FOXP2 WILD-TYPE   12   41
   clus
vv  FOXP2 MUTATED FOXP2 WILD-TYPE
  0             5              12
  1            13              41
                 vv
clus              M0 M1 MX
  FOXP2 MUTATED   10  1  7
  FOXP2 WILD-TYPE 29  2 23
D73V6, multiclass
    clus
vv   FOXP2 MUTATED FOXP2 WILD-TYPE
  M0            10              29
  M1             1               2
  MX             7              23
D73V7, binary
                 cls
clus               0  1
  FOXP2 MUTATED    9  9
  FOXP2 WILD-TYPE 27 27
[1] "tbl2"
                 cls
clus              [,1] [,2]
  FOXP2 MUTATED      9    9
  FOXP2 WILD-TYPE   27   27
        clus
vv       FOXP2 MUTATED FOXP2 WILD-TYPE
  FEMALE             9              27
  MALE               9              27
                 vv
clus              PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  FOXP2 MUTATED                                    17
  FOXP2 WILD-TYPE                                  48
                 vv
clus              PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  FOXP2 MUTATED                                       0
  FOXP2 WILD-TYPE                                     4
                 vv
clus              PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  FOXP2 MUTATED                                                  1
  FOXP2 WILD-TYPE                                                1
D73V8, multiclass
                                                  clus
vv                                                 FOXP2 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                         17
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                        0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA             1
                                                  clus
vv                                                 FOXP2 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                           48
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                          4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA               1
D73V9, continuous
D73V10, continuous
[1] "Remove cluster labels:" "FOXP2 MUTATED"         
clus
  FOXP2 MUTATED FOXP2 WILD-TYPE 
              2              17 
     TCGA-FB-A4P5      TCGA-FB-A4P6      TCGA-FB-A5VM      TCGA-FB-A78T 
"FOXP2 WILD-TYPE" "FOXP2 WILD-TYPE" "FOXP2 WILD-TYPE" "FOXP2 WILD-TYPE" 
     TCGA-FB-A7DR      TCGA-H6-8124      TCGA-H8-A6C1      TCGA-IB-7649 
"FOXP2 WILD-TYPE" "FOXP2 WILD-TYPE" "FOXP2 WILD-TYPE" "FOXP2 WILD-TYPE" 
     TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7891      TCGA-IB-8126 
"FOXP2 WILD-TYPE" "FOXP2 WILD-TYPE" "FOXP2 WILD-TYPE" "FOXP2 WILD-TYPE" 
     TCGA-IB-8127      TCGA-IB-A5SS      TCGA-IB-A6UG      TCGA-LB-A7SX 
"FOXP2 WILD-TYPE" "FOXP2 WILD-TYPE" "FOXP2 WILD-TYPE" "FOXP2 WILD-TYPE" 
     TCGA-OE-A75W 
"FOXP2 WILD-TYPE" 
                 vv
clus              R0 R1 RX
  FOXP2 MUTATED   11  6  0
  FOXP2 WILD-TYPE 31 18  2
D73V11, multiclass
    clus
vv   FOXP2 MUTATED FOXP2 WILD-TYPE
  R0            11              31
  R1             6              18
  RX             0               2
D73V12, continuous

Clustering(74) Variable = MAGEA10 MUTATION ANALYSIS
D74V1, survival
                   sevent
clus2                0  1
  MAGEA10 MUTATED    9  2
  MAGEA10 WILD-TYPE 31 27
  MAGEA10 MUTATED MAGEA10 WILD-TYPE 
               11                58 
  MAGEA10 MUTATED MAGEA10 WILD-TYPE 
                2                27 
$`MAGEA10 MUTATED`
TCGA-F2-6880 TCGA-FB-A7DR TCGA-H6-A45N TCGA-HZ-7289 TCGA-HZ-7922 TCGA-HZ-8001 
        9.70         5.46         7.66         7.89         0.13         0.62 
TCGA-HZ-8002 TCGA-HZ-8636 TCGA-HZ-8638 TCGA-IB-7891 TCGA-IB-7897 
        0.79         0.16         2.99        16.04        15.98 

$`MAGEA10 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H TCGA-FB-A4P5 
       10.98        11.84         7.10         5.03        19.27         0.13 
TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FZ-5920 TCGA-FZ-5922 
       11.93        12.66         2.47         0.03         2.01        36.20 
TCGA-FZ-5923 TCGA-H6-8124 TCGA-H8-A6C1 TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7923 
       20.81        12.89        13.02         0.92         0.66         0.26 
TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 
       12.13        11.87         0.26         0.69         3.95         0.92 
TCGA-HZ-8317 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 
        0.53         0.76         0.95         6.38         1.51        11.41 
TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7651 TCGA-IB-7652 
       49.38         4.77        21.90        15.35        19.82        15.65 
TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 
       27.98         4.04         3.62        43.79        15.81        19.66 
TCGA-IB-7893 TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ 
        3.85         0.56        17.16        10.82         9.86         7.20 
TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W TCGA-PZ-A5RE 
       15.12         0.26         1.35         4.18         3.62         8.12 
TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
       13.68        16.80        14.14        18.67 

  MAGEA10 MUTATED MAGEA10 WILD-TYPE 
             0.13              0.03 
  MAGEA10 MUTATED MAGEA10 WILD-TYPE 
            16.04             49.38 
  MAGEA10 MUTATED MAGEA10 WILD-TYPE 
             5.46              8.99 
[1] "0.1 - 16.0 (5.5)" "0.0 - 49.4 (9.0)"
       TCGA-F2-6879        TCGA-F2-6880        TCGA-F2-7273        TCGA-F2-7276 
"MAGEA10 WILD-TYPE"   "MAGEA10 MUTATED" "MAGEA10 WILD-TYPE" "MAGEA10 WILD-TYPE" 
       TCGA-F2-A44G        TCGA-F2-A44H        TCGA-FB-A4P5        TCGA-FB-A4P6 
"MAGEA10 WILD-TYPE" "MAGEA10 WILD-TYPE" "MAGEA10 WILD-TYPE" "MAGEA10 WILD-TYPE" 
       TCGA-FB-A545        TCGA-FB-A5VM        TCGA-FB-A78T        TCGA-FB-A7DR 
"MAGEA10 WILD-TYPE" "MAGEA10 WILD-TYPE" "MAGEA10 WILD-TYPE"   "MAGEA10 MUTATED" 
       TCGA-FZ-5920        TCGA-FZ-5922        TCGA-FZ-5923        TCGA-H6-8124 
"MAGEA10 WILD-TYPE" "MAGEA10 WILD-TYPE" "MAGEA10 WILD-TYPE" "MAGEA10 WILD-TYPE" 
       TCGA-H6-A45N        TCGA-H8-A6C1        TCGA-HZ-7289        TCGA-HZ-7918 
  "MAGEA10 MUTATED" "MAGEA10 WILD-TYPE"   "MAGEA10 MUTATED" "MAGEA10 WILD-TYPE" 
       TCGA-HZ-7919        TCGA-HZ-7922        TCGA-HZ-7923        TCGA-HZ-7924 
"MAGEA10 WILD-TYPE"   "MAGEA10 MUTATED" "MAGEA10 WILD-TYPE" "MAGEA10 WILD-TYPE" 
       TCGA-HZ-7925        TCGA-HZ-7926        TCGA-HZ-8001        TCGA-HZ-8002 
"MAGEA10 WILD-TYPE" "MAGEA10 WILD-TYPE"   "MAGEA10 MUTATED"   "MAGEA10 MUTATED" 
       TCGA-HZ-8003        TCGA-HZ-8005        TCGA-HZ-8315        TCGA-HZ-8317 
"MAGEA10 WILD-TYPE" "MAGEA10 WILD-TYPE" "MAGEA10 WILD-TYPE" "MAGEA10 WILD-TYPE" 
       TCGA-HZ-8636        TCGA-HZ-8638        TCGA-HZ-A49G        TCGA-HZ-A49H 
  "MAGEA10 MUTATED"   "MAGEA10 MUTATED" "MAGEA10 WILD-TYPE" "MAGEA10 WILD-TYPE" 
       TCGA-HZ-A4BH        TCGA-HZ-A4BK        TCGA-IB-7644        TCGA-IB-7645 
"MAGEA10 WILD-TYPE" "MAGEA10 WILD-TYPE" "MAGEA10 WILD-TYPE" "MAGEA10 WILD-TYPE" 
       TCGA-IB-7646        TCGA-IB-7647        TCGA-IB-7649        TCGA-IB-7651 
"MAGEA10 WILD-TYPE" "MAGEA10 WILD-TYPE" "MAGEA10 WILD-TYPE" "MAGEA10 WILD-TYPE" 
       TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-7886        TCGA-IB-7887 
"MAGEA10 WILD-TYPE" "MAGEA10 WILD-TYPE" "MAGEA10 WILD-TYPE" "MAGEA10 WILD-TYPE" 
       TCGA-IB-7888        TCGA-IB-7889        TCGA-IB-7890        TCGA-IB-7891 
"MAGEA10 WILD-TYPE" "MAGEA10 WILD-TYPE" "MAGEA10 WILD-TYPE"   "MAGEA10 MUTATED" 
       TCGA-IB-7893        TCGA-IB-7897        TCGA-IB-8126        TCGA-IB-8127 
"MAGEA10 WILD-TYPE"   "MAGEA10 MUTATED" "MAGEA10 WILD-TYPE" "MAGEA10 WILD-TYPE" 
       TCGA-IB-A5SO        TCGA-IB-A5SP        TCGA-IB-A5SQ        TCGA-IB-A5SS 
"MAGEA10 WILD-TYPE" "MAGEA10 WILD-TYPE" "MAGEA10 WILD-TYPE" "MAGEA10 WILD-TYPE" 
       TCGA-IB-A5ST        TCGA-IB-A6UG        TCGA-LB-A7SX        TCGA-OE-A75W 
"MAGEA10 WILD-TYPE" "MAGEA10 WILD-TYPE" "MAGEA10 WILD-TYPE" "MAGEA10 WILD-TYPE" 
       TCGA-PZ-A5RE        TCGA-Q3-A5QY        TCGA-US-A779        TCGA-US-A77E 
"MAGEA10 WILD-TYPE" "MAGEA10 WILD-TYPE" "MAGEA10 WILD-TYPE" "MAGEA10 WILD-TYPE" 
       TCGA-US-A77J 
"MAGEA10 WILD-TYPE" 
       TCGA-F2-6879        TCGA-F2-6880        TCGA-F2-7273        TCGA-F2-7276 
"MAGEA10 WILD-TYPE"   "MAGEA10 MUTATED" "MAGEA10 WILD-TYPE" "MAGEA10 WILD-TYPE" 
       TCGA-F2-A44G        TCGA-F2-A44H        TCGA-FB-A4P5        TCGA-FB-A4P6 
"MAGEA10 WILD-TYPE" "MAGEA10 WILD-TYPE" "MAGEA10 WILD-TYPE" "MAGEA10 WILD-TYPE" 
       TCGA-FB-A545        TCGA-FB-A5VM        TCGA-FB-A78T        TCGA-FB-A7DR 
"MAGEA10 WILD-TYPE" "MAGEA10 WILD-TYPE" "MAGEA10 WILD-TYPE"   "MAGEA10 MUTATED" 
       TCGA-FZ-5920        TCGA-FZ-5922        TCGA-FZ-5923        TCGA-H6-8124 
"MAGEA10 WILD-TYPE" "MAGEA10 WILD-TYPE" "MAGEA10 WILD-TYPE" "MAGEA10 WILD-TYPE" 
       TCGA-H6-A45N        TCGA-H8-A6C1        TCGA-HZ-7289        TCGA-HZ-7918 
  "MAGEA10 MUTATED" "MAGEA10 WILD-TYPE"   "MAGEA10 MUTATED" "MAGEA10 WILD-TYPE" 
       TCGA-HZ-7919        TCGA-HZ-7922        TCGA-HZ-7923        TCGA-HZ-7924 
"MAGEA10 WILD-TYPE"   "MAGEA10 MUTATED" "MAGEA10 WILD-TYPE" "MAGEA10 WILD-TYPE" 
       TCGA-HZ-7925        TCGA-HZ-7926        TCGA-HZ-8001        TCGA-HZ-8002 
"MAGEA10 WILD-TYPE" "MAGEA10 WILD-TYPE"   "MAGEA10 MUTATED"   "MAGEA10 MUTATED" 
       TCGA-HZ-8003        TCGA-HZ-8005        TCGA-HZ-8315        TCGA-HZ-8317 
"MAGEA10 WILD-TYPE" "MAGEA10 WILD-TYPE" "MAGEA10 WILD-TYPE" "MAGEA10 WILD-TYPE" 
       TCGA-HZ-8636        TCGA-HZ-8638        TCGA-HZ-A49G        TCGA-HZ-A49H 
  "MAGEA10 MUTATED"   "MAGEA10 MUTATED" "MAGEA10 WILD-TYPE" "MAGEA10 WILD-TYPE" 
       TCGA-HZ-A4BH        TCGA-HZ-A4BK        TCGA-IB-7644        TCGA-IB-7645 
"MAGEA10 WILD-TYPE" "MAGEA10 WILD-TYPE" "MAGEA10 WILD-TYPE" "MAGEA10 WILD-TYPE" 
       TCGA-IB-7646        TCGA-IB-7647        TCGA-IB-7649        TCGA-IB-7651 
"MAGEA10 WILD-TYPE" "MAGEA10 WILD-TYPE" "MAGEA10 WILD-TYPE" "MAGEA10 WILD-TYPE" 
       TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-7886        TCGA-IB-7887 
"MAGEA10 WILD-TYPE" "MAGEA10 WILD-TYPE" "MAGEA10 WILD-TYPE" "MAGEA10 WILD-TYPE" 
       TCGA-IB-7888        TCGA-IB-7889        TCGA-IB-7890        TCGA-IB-7891 
"MAGEA10 WILD-TYPE" "MAGEA10 WILD-TYPE" "MAGEA10 WILD-TYPE"   "MAGEA10 MUTATED" 
       TCGA-IB-7893        TCGA-IB-7897        TCGA-IB-8126        TCGA-IB-8127 
"MAGEA10 WILD-TYPE"   "MAGEA10 MUTATED" "MAGEA10 WILD-TYPE" "MAGEA10 WILD-TYPE" 
       TCGA-IB-A5SO        TCGA-IB-A5SP        TCGA-IB-A5SQ        TCGA-IB-A5SS 
"MAGEA10 WILD-TYPE" "MAGEA10 WILD-TYPE" "MAGEA10 WILD-TYPE" "MAGEA10 WILD-TYPE" 
       TCGA-IB-A5ST        TCGA-IB-A6UG        TCGA-LB-A7SX        TCGA-OE-A75W 
"MAGEA10 WILD-TYPE" "MAGEA10 WILD-TYPE" "MAGEA10 WILD-TYPE" "MAGEA10 WILD-TYPE" 
       TCGA-PZ-A5RE        TCGA-Q3-A5QY        TCGA-US-A779        TCGA-US-A77E 
"MAGEA10 WILD-TYPE" "MAGEA10 WILD-TYPE" "MAGEA10 WILD-TYPE" "MAGEA10 WILD-TYPE" 
       TCGA-US-A77J 
"MAGEA10 WILD-TYPE" 
       TCGA-F2-6879        TCGA-F2-6880        TCGA-F2-7273        TCGA-F2-7276 
"MAGEA10 WILD-TYPE"   "MAGEA10 MUTATED" "MAGEA10 WILD-TYPE" "MAGEA10 WILD-TYPE" 
       TCGA-F2-A44G        TCGA-F2-A44H        TCGA-FB-A4P5        TCGA-FB-A4P6 
"MAGEA10 WILD-TYPE" "MAGEA10 WILD-TYPE" "MAGEA10 WILD-TYPE" "MAGEA10 WILD-TYPE" 
       TCGA-FB-A545        TCGA-FB-A5VM        TCGA-FB-A78T        TCGA-FB-A7DR 
"MAGEA10 WILD-TYPE" "MAGEA10 WILD-TYPE" "MAGEA10 WILD-TYPE"   "MAGEA10 MUTATED" 
       TCGA-FZ-5920        TCGA-FZ-5922        TCGA-FZ-5923        TCGA-H6-8124 
"MAGEA10 WILD-TYPE" "MAGEA10 WILD-TYPE" "MAGEA10 WILD-TYPE" "MAGEA10 WILD-TYPE" 
       TCGA-H6-A45N        TCGA-H8-A6C1        TCGA-HZ-7289        TCGA-HZ-7918 
  "MAGEA10 MUTATED" "MAGEA10 WILD-TYPE"   "MAGEA10 MUTATED" "MAGEA10 WILD-TYPE" 
       TCGA-HZ-7919        TCGA-HZ-7922        TCGA-HZ-7923        TCGA-HZ-7924 
"MAGEA10 WILD-TYPE"   "MAGEA10 MUTATED" "MAGEA10 WILD-TYPE" "MAGEA10 WILD-TYPE" 
       TCGA-HZ-7925        TCGA-HZ-7926        TCGA-HZ-8001        TCGA-HZ-8002 
"MAGEA10 WILD-TYPE" "MAGEA10 WILD-TYPE"   "MAGEA10 MUTATED"   "MAGEA10 MUTATED" 
       TCGA-HZ-8003        TCGA-HZ-8005        TCGA-HZ-8315        TCGA-HZ-8317 
"MAGEA10 WILD-TYPE" "MAGEA10 WILD-TYPE" "MAGEA10 WILD-TYPE" "MAGEA10 WILD-TYPE" 
       TCGA-HZ-8636        TCGA-HZ-8638        TCGA-HZ-A49G        TCGA-HZ-A49H 
  "MAGEA10 MUTATED"   "MAGEA10 MUTATED" "MAGEA10 WILD-TYPE" "MAGEA10 WILD-TYPE" 
       TCGA-HZ-A4BH        TCGA-HZ-A4BK        TCGA-IB-7644        TCGA-IB-7645 
"MAGEA10 WILD-TYPE" "MAGEA10 WILD-TYPE" "MAGEA10 WILD-TYPE" "MAGEA10 WILD-TYPE" 
       TCGA-IB-7646        TCGA-IB-7647        TCGA-IB-7649        TCGA-IB-7651 
"MAGEA10 WILD-TYPE" "MAGEA10 WILD-TYPE" "MAGEA10 WILD-TYPE" "MAGEA10 WILD-TYPE" 
       TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-7886        TCGA-IB-7887 
"MAGEA10 WILD-TYPE" "MAGEA10 WILD-TYPE" "MAGEA10 WILD-TYPE" "MAGEA10 WILD-TYPE" 
       TCGA-IB-7888        TCGA-IB-7889        TCGA-IB-7890        TCGA-IB-7891 
"MAGEA10 WILD-TYPE" "MAGEA10 WILD-TYPE" "MAGEA10 WILD-TYPE"   "MAGEA10 MUTATED" 
       TCGA-IB-7893        TCGA-IB-7897        TCGA-IB-8126        TCGA-IB-8127 
"MAGEA10 WILD-TYPE"   "MAGEA10 MUTATED" "MAGEA10 WILD-TYPE" "MAGEA10 WILD-TYPE" 
       TCGA-IB-A5SO        TCGA-IB-A5SP        TCGA-IB-A5SQ        TCGA-IB-A5SS 
"MAGEA10 WILD-TYPE" "MAGEA10 WILD-TYPE" "MAGEA10 WILD-TYPE" "MAGEA10 WILD-TYPE" 
       TCGA-IB-A5ST        TCGA-IB-A6UG        TCGA-LB-A7SX        TCGA-OE-A75W 
"MAGEA10 WILD-TYPE" "MAGEA10 WILD-TYPE" "MAGEA10 WILD-TYPE" "MAGEA10 WILD-TYPE" 
       TCGA-PZ-A5RE        TCGA-Q3-A5QY        TCGA-US-A779        TCGA-US-A77E 
"MAGEA10 WILD-TYPE" "MAGEA10 WILD-TYPE" "MAGEA10 WILD-TYPE" "MAGEA10 WILD-TYPE" 
       TCGA-US-A77J 
"MAGEA10 WILD-TYPE" 
[1] "hr=" "1.3"
D74V2, continuous
                   vv
clus                STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  MAGEA10 MUTATED          1        0         1         7         1        1
  MAGEA10 WILD-TYPE        0        4        10        44         1        2
D74V3, multiclass
                   vv
clus                T1+T2 T3+T4
  MAGEA10 MUTATED       1    10
  MAGEA10 WILD-TYPE     5    56
D74V4, multiclass
       clus
vv      MAGEA10 MUTATED MAGEA10 WILD-TYPE
  T1+T2               1                 5
  T3+T4              10                56
D74V5, binary
                   cls
clus                 0  1
  MAGEA10 MUTATED    3  7
  MAGEA10 WILD-TYPE 14 47
[1] "tbl2"
                   cls
clus                [,1] [,2]
  MAGEA10 MUTATED      3    7
  MAGEA10 WILD-TYPE   14   47
   clus
vv  MAGEA10 MUTATED MAGEA10 WILD-TYPE
  0               3                14
  1               7                47
                   vv
clus                M0 M1 MX
  MAGEA10 MUTATED    4  1  6
  MAGEA10 WILD-TYPE 35  2 24
D74V6, multiclass
    clus
vv   MAGEA10 MUTATED MAGEA10 WILD-TYPE
  M0               4                35
  M1               1                 2
  MX               6                24
D74V7, binary
                   cls
clus                 0  1
  MAGEA10 MUTATED    5  6
  MAGEA10 WILD-TYPE 31 30
[1] "tbl2"
                   cls
clus                [,1] [,2]
  MAGEA10 MUTATED      5    6
  MAGEA10 WILD-TYPE   31   30
        clus
vv       MAGEA10 MUTATED MAGEA10 WILD-TYPE
  FEMALE               5                31
  MALE                 6                30
                   vv
clus                PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  MAGEA10 MUTATED                                     7
  MAGEA10 WILD-TYPE                                  58
                   vv
clus                PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  MAGEA10 MUTATED                                       2
  MAGEA10 WILD-TYPE                                     2
                   vv
clus                PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  MAGEA10 MUTATED                                                  2
  MAGEA10 WILD-TYPE                                                0
D74V8, multiclass
                                                  clus
vv                                                 MAGEA10 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                            7
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                          2
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA               2
                                                  clus
vv                                                 MAGEA10 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                             58
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                            2
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                 0
D74V9, continuous
D74V10, continuous
[1] "Remove cluster labels:" "MAGEA10 MUTATED"       
clus
  MAGEA10 MUTATED MAGEA10 WILD-TYPE 
                2                17 
       TCGA-FB-A4P5        TCGA-FB-A4P6        TCGA-FB-A5VM        TCGA-FB-A78T 
"MAGEA10 WILD-TYPE" "MAGEA10 WILD-TYPE" "MAGEA10 WILD-TYPE" "MAGEA10 WILD-TYPE" 
       TCGA-H6-8124        TCGA-H8-A6C1        TCGA-IB-7644        TCGA-IB-7649 
"MAGEA10 WILD-TYPE" "MAGEA10 WILD-TYPE" "MAGEA10 WILD-TYPE" "MAGEA10 WILD-TYPE" 
       TCGA-IB-7651        TCGA-IB-7885        TCGA-IB-7886        TCGA-IB-8126 
"MAGEA10 WILD-TYPE" "MAGEA10 WILD-TYPE" "MAGEA10 WILD-TYPE" "MAGEA10 WILD-TYPE" 
       TCGA-IB-8127        TCGA-IB-A5SS        TCGA-IB-A6UG        TCGA-LB-A7SX 
"MAGEA10 WILD-TYPE" "MAGEA10 WILD-TYPE" "MAGEA10 WILD-TYPE" "MAGEA10 WILD-TYPE" 
       TCGA-OE-A75W 
"MAGEA10 WILD-TYPE" 
                   vv
clus                R0 R1 RX
  MAGEA10 MUTATED    8  1  1
  MAGEA10 WILD-TYPE 34 23  1
D74V11, multiclass
    clus
vv   MAGEA10 MUTATED MAGEA10 WILD-TYPE
  R0               8                34
  R1               1                23
  RX               1                 1
D74V12, continuous

Clustering(75) Variable = EGR1 MUTATION ANALYSIS
D75V1, survival
                sevent
clus2             0  1
  EGR1 MUTATED    8  6
  EGR1 WILD-TYPE 32 23
  EGR1 MUTATED EGR1 WILD-TYPE 
            14             55 
  EGR1 MUTATED EGR1 WILD-TYPE 
             6             23 
$`EGR1 MUTATED`
TCGA-F2-6880 TCGA-H6-A45N TCGA-HZ-7919 TCGA-HZ-8002 TCGA-HZ-8005 TCGA-HZ-8636 
        9.70         7.66         0.66         0.79         3.95         0.16 
TCGA-HZ-8638 TCGA-IB-7651 TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7890 TCGA-IB-7893 
        2.99        19.82        15.65        27.98        19.66         3.85 
TCGA-IB-7897 TCGA-IB-8127 
       15.98        17.16 

$`EGR1 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H TCGA-FB-A4P5 
       10.98        11.84         7.10         5.03        19.27         0.13 
TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR TCGA-FZ-5920 
       11.93        12.66         2.47         0.03         5.46         2.01 
TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 TCGA-H8-A6C1 TCGA-HZ-7289 TCGA-HZ-7918 
       36.20        20.81        12.89        13.02         7.89         0.92 
TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8001 
        0.13         0.26        12.13        11.87         0.26         0.62 
TCGA-HZ-8003 TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH 
        0.69         0.92         0.53         0.76         0.95         6.38 
TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 
        1.51        11.41        49.38         4.77        21.90        15.35 
TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7891 TCGA-IB-8126 
        4.04         3.62        43.79        15.81        16.04         0.56 
TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG 
       10.82         9.86         7.20        15.12         0.26         1.35 
TCGA-LB-A7SX TCGA-OE-A75W TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E 
        4.18         3.62         8.12        13.68        16.80        14.14 
TCGA-US-A77J 
       18.67 

  EGR1 MUTATED EGR1 WILD-TYPE 
          0.16           0.03 
  EGR1 MUTATED EGR1 WILD-TYPE 
         27.98          49.38 
  EGR1 MUTATED EGR1 WILD-TYPE 
          8.68           7.20 
[1] "0.2 - 28.0 (8.7)" "0.0 - 49.4 (7.2)"
    TCGA-F2-6879     TCGA-F2-6880     TCGA-F2-7273     TCGA-F2-7276 
"EGR1 WILD-TYPE"   "EGR1 MUTATED" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" 
    TCGA-F2-A44G     TCGA-F2-A44H     TCGA-FB-A4P5     TCGA-FB-A4P6 
"EGR1 WILD-TYPE" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" 
    TCGA-FB-A545     TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-FB-A7DR 
"EGR1 WILD-TYPE" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" 
    TCGA-FZ-5920     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-H6-8124 
"EGR1 WILD-TYPE" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" 
    TCGA-H6-A45N     TCGA-H8-A6C1     TCGA-HZ-7289     TCGA-HZ-7918 
  "EGR1 MUTATED" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" 
    TCGA-HZ-7919     TCGA-HZ-7922     TCGA-HZ-7923     TCGA-HZ-7924 
  "EGR1 MUTATED" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" 
    TCGA-HZ-7925     TCGA-HZ-7926     TCGA-HZ-8001     TCGA-HZ-8002 
"EGR1 WILD-TYPE" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE"   "EGR1 MUTATED" 
    TCGA-HZ-8003     TCGA-HZ-8005     TCGA-HZ-8315     TCGA-HZ-8317 
"EGR1 WILD-TYPE"   "EGR1 MUTATED" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" 
    TCGA-HZ-8636     TCGA-HZ-8638     TCGA-HZ-A49G     TCGA-HZ-A49H 
  "EGR1 MUTATED"   "EGR1 MUTATED" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" 
    TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-IB-7644     TCGA-IB-7645 
"EGR1 WILD-TYPE" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" 
    TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7651 
"EGR1 WILD-TYPE" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE"   "EGR1 MUTATED" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887 
  "EGR1 MUTATED"   "EGR1 MUTATED" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" 
    TCGA-IB-7888     TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891 
"EGR1 WILD-TYPE" "EGR1 WILD-TYPE"   "EGR1 MUTATED" "EGR1 WILD-TYPE" 
    TCGA-IB-7893     TCGA-IB-7897     TCGA-IB-8126     TCGA-IB-8127 
  "EGR1 MUTATED"   "EGR1 MUTATED" "EGR1 WILD-TYPE"   "EGR1 MUTATED" 
    TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS 
"EGR1 WILD-TYPE" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" 
    TCGA-IB-A5ST     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
"EGR1 WILD-TYPE" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" 
    TCGA-PZ-A5RE     TCGA-Q3-A5QY     TCGA-US-A779     TCGA-US-A77E 
"EGR1 WILD-TYPE" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" 
    TCGA-US-A77J 
"EGR1 WILD-TYPE" 
    TCGA-F2-6879     TCGA-F2-6880     TCGA-F2-7273     TCGA-F2-7276 
"EGR1 WILD-TYPE"   "EGR1 MUTATED" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" 
    TCGA-F2-A44G     TCGA-F2-A44H     TCGA-FB-A4P5     TCGA-FB-A4P6 
"EGR1 WILD-TYPE" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" 
    TCGA-FB-A545     TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-FB-A7DR 
"EGR1 WILD-TYPE" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" 
    TCGA-FZ-5920     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-H6-8124 
"EGR1 WILD-TYPE" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" 
    TCGA-H6-A45N     TCGA-H8-A6C1     TCGA-HZ-7289     TCGA-HZ-7918 
  "EGR1 MUTATED" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" 
    TCGA-HZ-7919     TCGA-HZ-7922     TCGA-HZ-7923     TCGA-HZ-7924 
  "EGR1 MUTATED" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" 
    TCGA-HZ-7925     TCGA-HZ-7926     TCGA-HZ-8001     TCGA-HZ-8002 
"EGR1 WILD-TYPE" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE"   "EGR1 MUTATED" 
    TCGA-HZ-8003     TCGA-HZ-8005     TCGA-HZ-8315     TCGA-HZ-8317 
"EGR1 WILD-TYPE"   "EGR1 MUTATED" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" 
    TCGA-HZ-8636     TCGA-HZ-8638     TCGA-HZ-A49G     TCGA-HZ-A49H 
  "EGR1 MUTATED"   "EGR1 MUTATED" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" 
    TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-IB-7644     TCGA-IB-7645 
"EGR1 WILD-TYPE" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" 
    TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7651 
"EGR1 WILD-TYPE" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE"   "EGR1 MUTATED" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887 
  "EGR1 MUTATED"   "EGR1 MUTATED" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" 
    TCGA-IB-7888     TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891 
"EGR1 WILD-TYPE" "EGR1 WILD-TYPE"   "EGR1 MUTATED" "EGR1 WILD-TYPE" 
    TCGA-IB-7893     TCGA-IB-7897     TCGA-IB-8126     TCGA-IB-8127 
  "EGR1 MUTATED"   "EGR1 MUTATED" "EGR1 WILD-TYPE"   "EGR1 MUTATED" 
    TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS 
"EGR1 WILD-TYPE" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" 
    TCGA-IB-A5ST     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
"EGR1 WILD-TYPE" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" 
    TCGA-PZ-A5RE     TCGA-Q3-A5QY     TCGA-US-A779     TCGA-US-A77E 
"EGR1 WILD-TYPE" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" 
    TCGA-US-A77J 
"EGR1 WILD-TYPE" 
    TCGA-F2-6879     TCGA-F2-6880     TCGA-F2-7273     TCGA-F2-7276 
"EGR1 WILD-TYPE"   "EGR1 MUTATED" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" 
    TCGA-F2-A44G     TCGA-F2-A44H     TCGA-FB-A4P5     TCGA-FB-A4P6 
"EGR1 WILD-TYPE" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" 
    TCGA-FB-A545     TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-FB-A7DR 
"EGR1 WILD-TYPE" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" 
    TCGA-FZ-5920     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-H6-8124 
"EGR1 WILD-TYPE" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" 
    TCGA-H6-A45N     TCGA-H8-A6C1     TCGA-HZ-7289     TCGA-HZ-7918 
  "EGR1 MUTATED" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" 
    TCGA-HZ-7919     TCGA-HZ-7922     TCGA-HZ-7923     TCGA-HZ-7924 
  "EGR1 MUTATED" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" 
    TCGA-HZ-7925     TCGA-HZ-7926     TCGA-HZ-8001     TCGA-HZ-8002 
"EGR1 WILD-TYPE" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE"   "EGR1 MUTATED" 
    TCGA-HZ-8003     TCGA-HZ-8005     TCGA-HZ-8315     TCGA-HZ-8317 
"EGR1 WILD-TYPE"   "EGR1 MUTATED" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" 
    TCGA-HZ-8636     TCGA-HZ-8638     TCGA-HZ-A49G     TCGA-HZ-A49H 
  "EGR1 MUTATED"   "EGR1 MUTATED" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" 
    TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-IB-7644     TCGA-IB-7645 
"EGR1 WILD-TYPE" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" 
    TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7651 
"EGR1 WILD-TYPE" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE"   "EGR1 MUTATED" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887 
  "EGR1 MUTATED"   "EGR1 MUTATED" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" 
    TCGA-IB-7888     TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891 
"EGR1 WILD-TYPE" "EGR1 WILD-TYPE"   "EGR1 MUTATED" "EGR1 WILD-TYPE" 
    TCGA-IB-7893     TCGA-IB-7897     TCGA-IB-8126     TCGA-IB-8127 
  "EGR1 MUTATED"   "EGR1 MUTATED" "EGR1 WILD-TYPE"   "EGR1 MUTATED" 
    TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS 
"EGR1 WILD-TYPE" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" 
    TCGA-IB-A5ST     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
"EGR1 WILD-TYPE" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" 
    TCGA-PZ-A5RE     TCGA-Q3-A5QY     TCGA-US-A779     TCGA-US-A77E 
"EGR1 WILD-TYPE" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" "EGR1 WILD-TYPE" 
    TCGA-US-A77J 
"EGR1 WILD-TYPE" 
[1] "hr=" "1.1"
D75V2, continuous
                vv
clus             STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  EGR1 MUTATED          1        1         1        10         0        1
  EGR1 WILD-TYPE        0        3        10        41         2        2
D75V3, multiclass
                vv
clus             T1+T2 T3+T4
  EGR1 MUTATED       2    12
  EGR1 WILD-TYPE     4    54
D75V4, multiclass
       clus
vv      EGR1 MUTATED EGR1 WILD-TYPE
  T1+T2            2              4
  T3+T4           12             54
D75V5, binary
                cls
clus              0  1
  EGR1 MUTATED    4 10
  EGR1 WILD-TYPE 13 44
[1] "tbl2"
                cls
clus             [,1] [,2]
  EGR1 MUTATED      4   10
  EGR1 WILD-TYPE   13   44
   clus
vv  EGR1 MUTATED EGR1 WILD-TYPE
  0            4             13
  1           10             44
                vv
clus             M0 M1 MX
  EGR1 MUTATED    9  1  4
  EGR1 WILD-TYPE 30  2 26
D75V6, multiclass
    clus
vv   EGR1 MUTATED EGR1 WILD-TYPE
  M0            9             30
  M1            1              2
  MX            4             26
D75V7, binary
                cls
clus              0  1
  EGR1 MUTATED    8  6
  EGR1 WILD-TYPE 28 30
[1] "tbl2"
                cls
clus             [,1] [,2]
  EGR1 MUTATED      8    6
  EGR1 WILD-TYPE   28   30
        clus
vv       EGR1 MUTATED EGR1 WILD-TYPE
  FEMALE            8             28
  MALE              6             30
                vv
clus             PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  EGR1 MUTATED                                    12
  EGR1 WILD-TYPE                                  53
                vv
clus             PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  EGR1 MUTATED                                       1
  EGR1 WILD-TYPE                                     3
                vv
clus             PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  EGR1 MUTATED                                                  1
  EGR1 WILD-TYPE                                                1
D75V8, multiclass
                                                  clus
vv                                                 EGR1 MUTATED EGR1 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                        12             53
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                       1              3
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA            1              1
D75V9, continuous
D75V10, continuous
                vv
clus             R0 R1 RX
  EGR1 MUTATED    8  5  0
  EGR1 WILD-TYPE 34 19  2
D75V11, multiclass
    clus
vv   EGR1 MUTATED EGR1 WILD-TYPE
  R0            8             34
  R1            5             19
  RX            0              2
D75V12, continuous

Clustering(76) Variable = PRDM8 MUTATION ANALYSIS
D76V1, survival
                 sevent
clus2              0  1
  PRDM8 MUTATED   12  8
  PRDM8 WILD-TYPE 28 21
  PRDM8 MUTATED PRDM8 WILD-TYPE 
             20              49 
  PRDM8 MUTATED PRDM8 WILD-TYPE 
              8              21 
$`PRDM8 MUTATED`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-A44H TCGA-FB-A545 TCGA-HZ-7919 TCGA-HZ-7922 
       10.98         9.70        19.27        12.66         0.66         0.13 
TCGA-HZ-7923 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-IB-7644 
        0.26         0.79         0.69         0.95         6.38        11.41 
TCGA-IB-7649 TCGA-IB-7651 TCGA-IB-7652 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 
       15.35        19.82        15.65         3.62        43.79        15.81 
TCGA-IB-7893 TCGA-PZ-A5RE 
        3.85         8.12 

$`PRDM8 WILD-TYPE`
TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-FB-A4P5 TCGA-FB-A4P6 TCGA-FB-A5VM 
       11.84         7.10         5.03         0.13        11.93         2.47 
TCGA-FB-A78T TCGA-FB-A7DR TCGA-FZ-5920 TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 
        0.03         5.46         2.01        36.20        20.81        12.89 
TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-7924 TCGA-HZ-7925 
        7.66        13.02         7.89         0.92        12.13        11.87 
TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8636 
        0.26         0.62         3.95         0.92         0.53         0.16 
TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A4BK TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 
        2.99         0.76         1.51        49.38         4.77        21.90 
TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-7897 TCGA-IB-8126 
       27.98         4.04        19.66        16.04        15.98         0.56 
TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST 
       17.16        10.82         9.86         7.20        15.12         0.26 
TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E 
        1.35         4.18         3.62        13.68        16.80        14.14 
TCGA-US-A77J 
       18.67 

  PRDM8 MUTATED PRDM8 WILD-TYPE 
           0.13            0.03 
  PRDM8 MUTATED PRDM8 WILD-TYPE 
          43.79           49.38 
  PRDM8 MUTATED PRDM8 WILD-TYPE 
           8.91            7.20 
[1] "0.1 - 43.8 (8.9)" "0.0 - 49.4 (7.2)"
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
  "PRDM8 MUTATED"   "PRDM8 MUTATED" "PRDM8 WILD-TYPE" "PRDM8 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"PRDM8 WILD-TYPE"   "PRDM8 MUTATED" "PRDM8 WILD-TYPE" "PRDM8 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
  "PRDM8 MUTATED" "PRDM8 WILD-TYPE" "PRDM8 WILD-TYPE" "PRDM8 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"PRDM8 WILD-TYPE" "PRDM8 WILD-TYPE" "PRDM8 WILD-TYPE" "PRDM8 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"PRDM8 WILD-TYPE" "PRDM8 WILD-TYPE" "PRDM8 WILD-TYPE" "PRDM8 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
  "PRDM8 MUTATED"   "PRDM8 MUTATED"   "PRDM8 MUTATED" "PRDM8 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"PRDM8 WILD-TYPE" "PRDM8 WILD-TYPE" "PRDM8 WILD-TYPE"   "PRDM8 MUTATED" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
  "PRDM8 MUTATED" "PRDM8 WILD-TYPE" "PRDM8 WILD-TYPE" "PRDM8 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"PRDM8 WILD-TYPE" "PRDM8 WILD-TYPE" "PRDM8 WILD-TYPE"   "PRDM8 MUTATED" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
  "PRDM8 MUTATED" "PRDM8 WILD-TYPE"   "PRDM8 MUTATED" "PRDM8 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"PRDM8 WILD-TYPE" "PRDM8 WILD-TYPE"   "PRDM8 MUTATED"   "PRDM8 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
  "PRDM8 MUTATED" "PRDM8 WILD-TYPE" "PRDM8 WILD-TYPE"   "PRDM8 MUTATED" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
  "PRDM8 MUTATED"   "PRDM8 MUTATED" "PRDM8 WILD-TYPE" "PRDM8 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
  "PRDM8 MUTATED" "PRDM8 WILD-TYPE" "PRDM8 WILD-TYPE" "PRDM8 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"PRDM8 WILD-TYPE" "PRDM8 WILD-TYPE" "PRDM8 WILD-TYPE" "PRDM8 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"PRDM8 WILD-TYPE" "PRDM8 WILD-TYPE" "PRDM8 WILD-TYPE" "PRDM8 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
  "PRDM8 MUTATED" "PRDM8 WILD-TYPE" "PRDM8 WILD-TYPE" "PRDM8 WILD-TYPE" 
     TCGA-US-A77J 
"PRDM8 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
  "PRDM8 MUTATED"   "PRDM8 MUTATED" "PRDM8 WILD-TYPE" "PRDM8 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"PRDM8 WILD-TYPE"   "PRDM8 MUTATED" "PRDM8 WILD-TYPE" "PRDM8 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
  "PRDM8 MUTATED" "PRDM8 WILD-TYPE" "PRDM8 WILD-TYPE" "PRDM8 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"PRDM8 WILD-TYPE" "PRDM8 WILD-TYPE" "PRDM8 WILD-TYPE" "PRDM8 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"PRDM8 WILD-TYPE" "PRDM8 WILD-TYPE" "PRDM8 WILD-TYPE" "PRDM8 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
  "PRDM8 MUTATED"   "PRDM8 MUTATED"   "PRDM8 MUTATED" "PRDM8 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"PRDM8 WILD-TYPE" "PRDM8 WILD-TYPE" "PRDM8 WILD-TYPE"   "PRDM8 MUTATED" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
  "PRDM8 MUTATED" "PRDM8 WILD-TYPE" "PRDM8 WILD-TYPE" "PRDM8 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"PRDM8 WILD-TYPE" "PRDM8 WILD-TYPE" "PRDM8 WILD-TYPE"   "PRDM8 MUTATED" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
  "PRDM8 MUTATED" "PRDM8 WILD-TYPE"   "PRDM8 MUTATED" "PRDM8 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"PRDM8 WILD-TYPE" "PRDM8 WILD-TYPE"   "PRDM8 MUTATED"   "PRDM8 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
  "PRDM8 MUTATED" "PRDM8 WILD-TYPE" "PRDM8 WILD-TYPE"   "PRDM8 MUTATED" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
  "PRDM8 MUTATED"   "PRDM8 MUTATED" "PRDM8 WILD-TYPE" "PRDM8 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
  "PRDM8 MUTATED" "PRDM8 WILD-TYPE" "PRDM8 WILD-TYPE" "PRDM8 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"PRDM8 WILD-TYPE" "PRDM8 WILD-TYPE" "PRDM8 WILD-TYPE" "PRDM8 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"PRDM8 WILD-TYPE" "PRDM8 WILD-TYPE" "PRDM8 WILD-TYPE" "PRDM8 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
  "PRDM8 MUTATED" "PRDM8 WILD-TYPE" "PRDM8 WILD-TYPE" "PRDM8 WILD-TYPE" 
     TCGA-US-A77J 
"PRDM8 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
  "PRDM8 MUTATED"   "PRDM8 MUTATED" "PRDM8 WILD-TYPE" "PRDM8 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"PRDM8 WILD-TYPE"   "PRDM8 MUTATED" "PRDM8 WILD-TYPE" "PRDM8 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
  "PRDM8 MUTATED" "PRDM8 WILD-TYPE" "PRDM8 WILD-TYPE" "PRDM8 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"PRDM8 WILD-TYPE" "PRDM8 WILD-TYPE" "PRDM8 WILD-TYPE" "PRDM8 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"PRDM8 WILD-TYPE" "PRDM8 WILD-TYPE" "PRDM8 WILD-TYPE" "PRDM8 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
  "PRDM8 MUTATED"   "PRDM8 MUTATED"   "PRDM8 MUTATED" "PRDM8 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"PRDM8 WILD-TYPE" "PRDM8 WILD-TYPE" "PRDM8 WILD-TYPE"   "PRDM8 MUTATED" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
  "PRDM8 MUTATED" "PRDM8 WILD-TYPE" "PRDM8 WILD-TYPE" "PRDM8 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"PRDM8 WILD-TYPE" "PRDM8 WILD-TYPE" "PRDM8 WILD-TYPE"   "PRDM8 MUTATED" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
  "PRDM8 MUTATED" "PRDM8 WILD-TYPE"   "PRDM8 MUTATED" "PRDM8 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"PRDM8 WILD-TYPE" "PRDM8 WILD-TYPE"   "PRDM8 MUTATED"   "PRDM8 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
  "PRDM8 MUTATED" "PRDM8 WILD-TYPE" "PRDM8 WILD-TYPE"   "PRDM8 MUTATED" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
  "PRDM8 MUTATED"   "PRDM8 MUTATED" "PRDM8 WILD-TYPE" "PRDM8 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
  "PRDM8 MUTATED" "PRDM8 WILD-TYPE" "PRDM8 WILD-TYPE" "PRDM8 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"PRDM8 WILD-TYPE" "PRDM8 WILD-TYPE" "PRDM8 WILD-TYPE" "PRDM8 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"PRDM8 WILD-TYPE" "PRDM8 WILD-TYPE" "PRDM8 WILD-TYPE" "PRDM8 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
  "PRDM8 MUTATED" "PRDM8 WILD-TYPE" "PRDM8 WILD-TYPE" "PRDM8 WILD-TYPE" 
     TCGA-US-A77J 
"PRDM8 WILD-TYPE" 
[1] "hr=" "1"  
D76V2, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  PRDM8 MUTATED          0        0         4        15         0        1
  PRDM8 WILD-TYPE        1        4         7        36         2        2
D76V3, multiclass
                 vv
clus              T1+T2 T3+T4
  PRDM8 MUTATED       0    20
  PRDM8 WILD-TYPE     6    46
D76V4, multiclass
       clus
vv      PRDM8 MUTATED PRDM8 WILD-TYPE
  T1+T2             0               6
  T3+T4            20              46
D76V5, binary
                 cls
clus               0  1
  PRDM8 MUTATED    4 16
  PRDM8 WILD-TYPE 13 38
[1] "tbl2"
                 cls
clus              [,1] [,2]
  PRDM8 MUTATED      4   16
  PRDM8 WILD-TYPE   13   38
   clus
vv  PRDM8 MUTATED PRDM8 WILD-TYPE
  0             4              13
  1            16              38
                 vv
clus              M0 M1 MX
  PRDM8 MUTATED   12  1  7
  PRDM8 WILD-TYPE 27  2 23
D76V6, multiclass
    clus
vv   PRDM8 MUTATED PRDM8 WILD-TYPE
  M0            12              27
  M1             1               2
  MX             7              23
D76V7, binary
                 cls
clus               0  1
  PRDM8 MUTATED   13  7
  PRDM8 WILD-TYPE 23 29
[1] "tbl2"
                 cls
clus              [,1] [,2]
  PRDM8 MUTATED     13    7
  PRDM8 WILD-TYPE   23   29
        clus
vv       PRDM8 MUTATED PRDM8 WILD-TYPE
  FEMALE            13              23
  MALE               7              29
                 vv
clus              PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  PRDM8 MUTATED                                    19
  PRDM8 WILD-TYPE                                  46
                 vv
clus              PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  PRDM8 MUTATED                                       0
  PRDM8 WILD-TYPE                                     4
                 vv
clus              PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  PRDM8 MUTATED                                                  0
  PRDM8 WILD-TYPE                                                2
D76V8, multiclass
                                                  clus
vv                                                 PRDM8 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                         19
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                        0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA             0
                                                  clus
vv                                                 PRDM8 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                           46
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                          4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA               2
D76V9, continuous
D76V10, continuous
                 vv
clus              R0 R1 RX
  PRDM8 MUTATED   12  6  0
  PRDM8 WILD-TYPE 30 18  2
D76V11, multiclass
    clus
vv   PRDM8 MUTATED PRDM8 WILD-TYPE
  R0            12              30
  R1             6              18
  RX             0               2
D76V12, continuous

Clustering(77) Variable = PIAS4 MUTATION ANALYSIS
D77V1, survival
                 sevent
clus2              0  1
  PIAS4 MUTATED    0  3
  PIAS4 WILD-TYPE 40 26
  PIAS4 MUTATED PIAS4 WILD-TYPE 
              3              66 
  PIAS4 MUTATED PIAS4 WILD-TYPE 
              3              26 
$`PIAS4 MUTATED`
TCGA-IB-7645 TCGA-IB-7651 TCGA-IB-A6UG 
       49.38        19.82         1.35 

$`PIAS4 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P5 TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR 
        0.13        11.93        12.66         2.47         0.03         5.46 
TCGA-FZ-5920 TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 
        2.01        36.20        20.81        12.89         7.66        13.02 
TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 
        7.89         0.92         0.66         0.13         0.26        12.13 
TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 
       11.87         0.26         0.62         0.79         0.69         3.95 
TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H 
        0.92         0.53         0.16         2.99         0.76         0.95 
TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 
        6.38         1.51        11.41         4.77        21.90        15.35 
TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 
       15.65        27.98         4.04         3.62        43.79        15.81 
TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-8127 
       19.66        16.04         3.85        15.98         0.56        17.16 
TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST TCGA-LB-A7SX 
       10.82         9.86         7.20        15.12         0.26         4.18 
TCGA-OE-A75W TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
        3.62         8.12        13.68        16.80        14.14        18.67 

  PIAS4 MUTATED PIAS4 WILD-TYPE 
           1.35            0.03 
  PIAS4 MUTATED PIAS4 WILD-TYPE 
          49.38           43.79 
  PIAS4 MUTATED PIAS4 WILD-TYPE 
          19.82            7.43 
[1] "1.4 - 49.4 (19.8)" "0.0 - 43.8 (7.4)" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"PIAS4 WILD-TYPE" "PIAS4 WILD-TYPE" "PIAS4 WILD-TYPE" "PIAS4 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"PIAS4 WILD-TYPE" "PIAS4 WILD-TYPE" "PIAS4 WILD-TYPE" "PIAS4 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"PIAS4 WILD-TYPE" "PIAS4 WILD-TYPE" "PIAS4 WILD-TYPE" "PIAS4 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"PIAS4 WILD-TYPE" "PIAS4 WILD-TYPE" "PIAS4 WILD-TYPE" "PIAS4 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"PIAS4 WILD-TYPE" "PIAS4 WILD-TYPE" "PIAS4 WILD-TYPE" "PIAS4 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"PIAS4 WILD-TYPE" "PIAS4 WILD-TYPE" "PIAS4 WILD-TYPE" "PIAS4 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"PIAS4 WILD-TYPE" "PIAS4 WILD-TYPE" "PIAS4 WILD-TYPE" "PIAS4 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"PIAS4 WILD-TYPE" "PIAS4 WILD-TYPE" "PIAS4 WILD-TYPE" "PIAS4 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"PIAS4 WILD-TYPE" "PIAS4 WILD-TYPE" "PIAS4 WILD-TYPE" "PIAS4 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"PIAS4 WILD-TYPE" "PIAS4 WILD-TYPE" "PIAS4 WILD-TYPE"   "PIAS4 MUTATED" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"PIAS4 WILD-TYPE" "PIAS4 WILD-TYPE" "PIAS4 WILD-TYPE"   "PIAS4 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"PIAS4 WILD-TYPE" "PIAS4 WILD-TYPE" "PIAS4 WILD-TYPE" "PIAS4 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"PIAS4 WILD-TYPE" "PIAS4 WILD-TYPE" "PIAS4 WILD-TYPE" "PIAS4 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"PIAS4 WILD-TYPE" "PIAS4 WILD-TYPE" "PIAS4 WILD-TYPE" "PIAS4 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"PIAS4 WILD-TYPE" "PIAS4 WILD-TYPE" "PIAS4 WILD-TYPE" "PIAS4 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"PIAS4 WILD-TYPE"   "PIAS4 MUTATED" "PIAS4 WILD-TYPE" "PIAS4 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"PIAS4 WILD-TYPE" "PIAS4 WILD-TYPE" "PIAS4 WILD-TYPE" "PIAS4 WILD-TYPE" 
     TCGA-US-A77J 
"PIAS4 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"PIAS4 WILD-TYPE" "PIAS4 WILD-TYPE" "PIAS4 WILD-TYPE" "PIAS4 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"PIAS4 WILD-TYPE" "PIAS4 WILD-TYPE" "PIAS4 WILD-TYPE" "PIAS4 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"PIAS4 WILD-TYPE" "PIAS4 WILD-TYPE" "PIAS4 WILD-TYPE" "PIAS4 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"PIAS4 WILD-TYPE" "PIAS4 WILD-TYPE" "PIAS4 WILD-TYPE" "PIAS4 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"PIAS4 WILD-TYPE" "PIAS4 WILD-TYPE" "PIAS4 WILD-TYPE" "PIAS4 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"PIAS4 WILD-TYPE" "PIAS4 WILD-TYPE" "PIAS4 WILD-TYPE" "PIAS4 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"PIAS4 WILD-TYPE" "PIAS4 WILD-TYPE" "PIAS4 WILD-TYPE" "PIAS4 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"PIAS4 WILD-TYPE" "PIAS4 WILD-TYPE" "PIAS4 WILD-TYPE" "PIAS4 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"PIAS4 WILD-TYPE" "PIAS4 WILD-TYPE" "PIAS4 WILD-TYPE" "PIAS4 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"PIAS4 WILD-TYPE" "PIAS4 WILD-TYPE" "PIAS4 WILD-TYPE"   "PIAS4 MUTATED" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"PIAS4 WILD-TYPE" "PIAS4 WILD-TYPE" "PIAS4 WILD-TYPE"   "PIAS4 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"PIAS4 WILD-TYPE" "PIAS4 WILD-TYPE" "PIAS4 WILD-TYPE" "PIAS4 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"PIAS4 WILD-TYPE" "PIAS4 WILD-TYPE" "PIAS4 WILD-TYPE" "PIAS4 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"PIAS4 WILD-TYPE" "PIAS4 WILD-TYPE" "PIAS4 WILD-TYPE" "PIAS4 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"PIAS4 WILD-TYPE" "PIAS4 WILD-TYPE" "PIAS4 WILD-TYPE" "PIAS4 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"PIAS4 WILD-TYPE"   "PIAS4 MUTATED" "PIAS4 WILD-TYPE" "PIAS4 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"PIAS4 WILD-TYPE" "PIAS4 WILD-TYPE" "PIAS4 WILD-TYPE" "PIAS4 WILD-TYPE" 
     TCGA-US-A77J 
"PIAS4 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"PIAS4 WILD-TYPE" "PIAS4 WILD-TYPE" "PIAS4 WILD-TYPE" "PIAS4 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"PIAS4 WILD-TYPE" "PIAS4 WILD-TYPE" "PIAS4 WILD-TYPE" "PIAS4 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"PIAS4 WILD-TYPE" "PIAS4 WILD-TYPE" "PIAS4 WILD-TYPE" "PIAS4 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"PIAS4 WILD-TYPE" "PIAS4 WILD-TYPE" "PIAS4 WILD-TYPE" "PIAS4 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"PIAS4 WILD-TYPE" "PIAS4 WILD-TYPE" "PIAS4 WILD-TYPE" "PIAS4 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"PIAS4 WILD-TYPE" "PIAS4 WILD-TYPE" "PIAS4 WILD-TYPE" "PIAS4 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"PIAS4 WILD-TYPE" "PIAS4 WILD-TYPE" "PIAS4 WILD-TYPE" "PIAS4 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"PIAS4 WILD-TYPE" "PIAS4 WILD-TYPE" "PIAS4 WILD-TYPE" "PIAS4 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"PIAS4 WILD-TYPE" "PIAS4 WILD-TYPE" "PIAS4 WILD-TYPE" "PIAS4 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"PIAS4 WILD-TYPE" "PIAS4 WILD-TYPE" "PIAS4 WILD-TYPE"   "PIAS4 MUTATED" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"PIAS4 WILD-TYPE" "PIAS4 WILD-TYPE" "PIAS4 WILD-TYPE"   "PIAS4 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"PIAS4 WILD-TYPE" "PIAS4 WILD-TYPE" "PIAS4 WILD-TYPE" "PIAS4 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"PIAS4 WILD-TYPE" "PIAS4 WILD-TYPE" "PIAS4 WILD-TYPE" "PIAS4 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"PIAS4 WILD-TYPE" "PIAS4 WILD-TYPE" "PIAS4 WILD-TYPE" "PIAS4 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"PIAS4 WILD-TYPE" "PIAS4 WILD-TYPE" "PIAS4 WILD-TYPE" "PIAS4 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"PIAS4 WILD-TYPE"   "PIAS4 MUTATED" "PIAS4 WILD-TYPE" "PIAS4 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"PIAS4 WILD-TYPE" "PIAS4 WILD-TYPE" "PIAS4 WILD-TYPE" "PIAS4 WILD-TYPE" 
     TCGA-US-A77J 
"PIAS4 WILD-TYPE" 
[1] "hr=" "2"  
D77V2, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  PIAS4 MUTATED          0        0         0         3         0        0
  PIAS4 WILD-TYPE        1        4        11        48         2        3
D77V3, multiclass
                 vv
clus              T1+T2 T3+T4
  PIAS4 MUTATED       0     3
  PIAS4 WILD-TYPE     6    63
D77V4, multiclass
       clus
vv      PIAS4 MUTATED PIAS4 WILD-TYPE
  T1+T2             0               6
  T3+T4             3              63
D77V5, binary
                 cls
clus               0  1
  PIAS4 MUTATED    0  3
  PIAS4 WILD-TYPE 17 51
[1] "tbl2"
                 cls
clus              [,1] [,2]
  PIAS4 MUTATED      0    3
  PIAS4 WILD-TYPE   17   51
   clus
vv  PIAS4 MUTATED PIAS4 WILD-TYPE
  0             0              17
  1             3              51
                 vv
clus              M0 M1 MX
  PIAS4 MUTATED    3  0  0
  PIAS4 WILD-TYPE 36  3 30
D77V6, multiclass
    clus
vv   PIAS4 MUTATED PIAS4 WILD-TYPE
  M0             3              36
  M1             0               3
  MX             0              30
D77V7, binary
                 cls
clus               0  1
  PIAS4 MUTATED    2  1
  PIAS4 WILD-TYPE 34 35
[1] "tbl2"
                 cls
clus              [,1] [,2]
  PIAS4 MUTATED      2    1
  PIAS4 WILD-TYPE   34   35
        clus
vv       PIAS4 MUTATED PIAS4 WILD-TYPE
  FEMALE             2              34
  MALE               1              35
                 vv
clus              PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  PIAS4 MUTATED                                     3
  PIAS4 WILD-TYPE                                  62
                 vv
clus              PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  PIAS4 MUTATED                                       0
  PIAS4 WILD-TYPE                                     4
                 vv
clus              PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  PIAS4 MUTATED                                                  0
  PIAS4 WILD-TYPE                                                2
D77V8, multiclass
                                                  clus
vv                                                 PIAS4 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                          3
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                        0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA             0
                                                  clus
vv                                                 PIAS4 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                           62
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                          4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA               2
D77V9, continuous
[1] "Remove cluster labels:" "PIAS4 MUTATED"         
clus
  PIAS4 MUTATED PIAS4 WILD-TYPE 
              2              20 
     TCGA-F2-6880      TCGA-FB-A4P5      TCGA-FB-A4P6      TCGA-FB-A5VM 
"PIAS4 WILD-TYPE" "PIAS4 WILD-TYPE" "PIAS4 WILD-TYPE" "PIAS4 WILD-TYPE" 
     TCGA-FB-A78T      TCGA-FB-A7DR      TCGA-H6-8124      TCGA-H6-A45N 
"PIAS4 WILD-TYPE" "PIAS4 WILD-TYPE" "PIAS4 WILD-TYPE" "PIAS4 WILD-TYPE" 
     TCGA-H8-A6C1      TCGA-IB-7644      TCGA-IB-7649      TCGA-IB-7885 
"PIAS4 WILD-TYPE" "PIAS4 WILD-TYPE" "PIAS4 WILD-TYPE" "PIAS4 WILD-TYPE" 
     TCGA-IB-7886      TCGA-IB-7887      TCGA-IB-7891      TCGA-IB-8126 
"PIAS4 WILD-TYPE" "PIAS4 WILD-TYPE" "PIAS4 WILD-TYPE" "PIAS4 WILD-TYPE" 
     TCGA-IB-8127      TCGA-IB-A5SS      TCGA-LB-A7SX      TCGA-OE-A75W 
"PIAS4 WILD-TYPE" "PIAS4 WILD-TYPE" "PIAS4 WILD-TYPE" "PIAS4 WILD-TYPE" 
D77V10, continuous
[1] "Remove cluster labels:" "PIAS4 MUTATED"         
clus
  PIAS4 MUTATED PIAS4 WILD-TYPE 
              2              17 
     TCGA-FB-A4P5      TCGA-FB-A4P6      TCGA-FB-A5VM      TCGA-FB-A78T 
"PIAS4 WILD-TYPE" "PIAS4 WILD-TYPE" "PIAS4 WILD-TYPE" "PIAS4 WILD-TYPE" 
     TCGA-FB-A7DR      TCGA-H6-8124      TCGA-H8-A6C1      TCGA-IB-7644 
"PIAS4 WILD-TYPE" "PIAS4 WILD-TYPE" "PIAS4 WILD-TYPE" "PIAS4 WILD-TYPE" 
     TCGA-IB-7649      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7891 
"PIAS4 WILD-TYPE" "PIAS4 WILD-TYPE" "PIAS4 WILD-TYPE" "PIAS4 WILD-TYPE" 
     TCGA-IB-8126      TCGA-IB-8127      TCGA-IB-A5SS      TCGA-LB-A7SX 
"PIAS4 WILD-TYPE" "PIAS4 WILD-TYPE" "PIAS4 WILD-TYPE" "PIAS4 WILD-TYPE" 
     TCGA-OE-A75W 
"PIAS4 WILD-TYPE" 
                 vv
clus              R0 R1 RX
  PIAS4 MUTATED    2  1  0
  PIAS4 WILD-TYPE 40 23  2
D77V11, multiclass
    clus
vv   PIAS4 MUTATED PIAS4 WILD-TYPE
  R0             2              40
  R1             1              23
  RX             0               2
D77V12, continuous

Clustering(78) Variable = TEX2 MUTATION ANALYSIS
D78V1, survival
                sevent
clus2             0  1
  TEX2 MUTATED    4  3
  TEX2 WILD-TYPE 36 26
  TEX2 MUTATED TEX2 WILD-TYPE 
             7             62 
  TEX2 MUTATED TEX2 WILD-TYPE 
             3             26 
$`TEX2 MUTATED`
TCGA-F2-6880 TCGA-F2-A44G TCGA-HZ-8001 TCGA-HZ-A4BK TCGA-IB-7645 TCGA-IB-7651 
        9.70         5.03         0.62         1.51        49.38        19.82 
TCGA-IB-8126 
        0.56 

$`TEX2 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44H TCGA-FB-A4P5 TCGA-FB-A4P6 
       10.98        11.84         7.10        19.27         0.13        11.93 
TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR TCGA-FZ-5920 TCGA-FZ-5922 
       12.66         2.47         0.03         5.46         2.01        36.20 
TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7289 TCGA-HZ-7918 
       20.81        12.89         7.66        13.02         7.89         0.92 
TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 
        0.66         0.13         0.26        12.13        11.87         0.26 
TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8636 
        0.79         0.69         3.95         0.92         0.53         0.16 
TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-IB-7644 TCGA-IB-7646 
        2.99         0.76         0.95         6.38        11.41         4.77 
TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 
       21.90        15.35        15.65        27.98         4.04         3.62 
TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-7897 
       43.79        15.81        19.66        16.04         3.85        15.98 
TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST 
       17.16        10.82         9.86         7.20        15.12         0.26 
TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 
        1.35         4.18         3.62         8.12        13.68        16.80 
TCGA-US-A77E TCGA-US-A77J 
       14.14        18.67 

  TEX2 MUTATED TEX2 WILD-TYPE 
          0.56           0.03 
  TEX2 MUTATED TEX2 WILD-TYPE 
         49.38          43.79 
  TEX2 MUTATED TEX2 WILD-TYPE 
         5.030          7.775 
[1] "0.6 - 49.4 (5.0)" "0.0 - 43.8 (7.8)"
    TCGA-F2-6879     TCGA-F2-6880     TCGA-F2-7273     TCGA-F2-7276 
"TEX2 WILD-TYPE"   "TEX2 MUTATED" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" 
    TCGA-F2-A44G     TCGA-F2-A44H     TCGA-FB-A4P5     TCGA-FB-A4P6 
  "TEX2 MUTATED" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" 
    TCGA-FB-A545     TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-FB-A7DR 
"TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" 
    TCGA-FZ-5920     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-H6-8124 
"TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" 
    TCGA-H6-A45N     TCGA-H8-A6C1     TCGA-HZ-7289     TCGA-HZ-7918 
"TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" 
    TCGA-HZ-7919     TCGA-HZ-7922     TCGA-HZ-7923     TCGA-HZ-7924 
"TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" 
    TCGA-HZ-7925     TCGA-HZ-7926     TCGA-HZ-8001     TCGA-HZ-8002 
"TEX2 WILD-TYPE" "TEX2 WILD-TYPE"   "TEX2 MUTATED" "TEX2 WILD-TYPE" 
    TCGA-HZ-8003     TCGA-HZ-8005     TCGA-HZ-8315     TCGA-HZ-8317 
"TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" 
    TCGA-HZ-8636     TCGA-HZ-8638     TCGA-HZ-A49G     TCGA-HZ-A49H 
"TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" 
    TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-IB-7644     TCGA-IB-7645 
"TEX2 WILD-TYPE"   "TEX2 MUTATED" "TEX2 WILD-TYPE"   "TEX2 MUTATED" 
    TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7651 
"TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE"   "TEX2 MUTATED" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887 
"TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" 
    TCGA-IB-7888     TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891 
"TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" 
    TCGA-IB-7893     TCGA-IB-7897     TCGA-IB-8126     TCGA-IB-8127 
"TEX2 WILD-TYPE" "TEX2 WILD-TYPE"   "TEX2 MUTATED" "TEX2 WILD-TYPE" 
    TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS 
"TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" 
    TCGA-IB-A5ST     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
"TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" 
    TCGA-PZ-A5RE     TCGA-Q3-A5QY     TCGA-US-A779     TCGA-US-A77E 
"TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" 
    TCGA-US-A77J 
"TEX2 WILD-TYPE" 
    TCGA-F2-6879     TCGA-F2-6880     TCGA-F2-7273     TCGA-F2-7276 
"TEX2 WILD-TYPE"   "TEX2 MUTATED" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" 
    TCGA-F2-A44G     TCGA-F2-A44H     TCGA-FB-A4P5     TCGA-FB-A4P6 
  "TEX2 MUTATED" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" 
    TCGA-FB-A545     TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-FB-A7DR 
"TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" 
    TCGA-FZ-5920     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-H6-8124 
"TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" 
    TCGA-H6-A45N     TCGA-H8-A6C1     TCGA-HZ-7289     TCGA-HZ-7918 
"TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" 
    TCGA-HZ-7919     TCGA-HZ-7922     TCGA-HZ-7923     TCGA-HZ-7924 
"TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" 
    TCGA-HZ-7925     TCGA-HZ-7926     TCGA-HZ-8001     TCGA-HZ-8002 
"TEX2 WILD-TYPE" "TEX2 WILD-TYPE"   "TEX2 MUTATED" "TEX2 WILD-TYPE" 
    TCGA-HZ-8003     TCGA-HZ-8005     TCGA-HZ-8315     TCGA-HZ-8317 
"TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" 
    TCGA-HZ-8636     TCGA-HZ-8638     TCGA-HZ-A49G     TCGA-HZ-A49H 
"TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" 
    TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-IB-7644     TCGA-IB-7645 
"TEX2 WILD-TYPE"   "TEX2 MUTATED" "TEX2 WILD-TYPE"   "TEX2 MUTATED" 
    TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7651 
"TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE"   "TEX2 MUTATED" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887 
"TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" 
    TCGA-IB-7888     TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891 
"TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" 
    TCGA-IB-7893     TCGA-IB-7897     TCGA-IB-8126     TCGA-IB-8127 
"TEX2 WILD-TYPE" "TEX2 WILD-TYPE"   "TEX2 MUTATED" "TEX2 WILD-TYPE" 
    TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS 
"TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" 
    TCGA-IB-A5ST     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
"TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" 
    TCGA-PZ-A5RE     TCGA-Q3-A5QY     TCGA-US-A779     TCGA-US-A77E 
"TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" 
    TCGA-US-A77J 
"TEX2 WILD-TYPE" 
    TCGA-F2-6879     TCGA-F2-6880     TCGA-F2-7273     TCGA-F2-7276 
"TEX2 WILD-TYPE"   "TEX2 MUTATED" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" 
    TCGA-F2-A44G     TCGA-F2-A44H     TCGA-FB-A4P5     TCGA-FB-A4P6 
  "TEX2 MUTATED" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" 
    TCGA-FB-A545     TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-FB-A7DR 
"TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" 
    TCGA-FZ-5920     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-H6-8124 
"TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" 
    TCGA-H6-A45N     TCGA-H8-A6C1     TCGA-HZ-7289     TCGA-HZ-7918 
"TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" 
    TCGA-HZ-7919     TCGA-HZ-7922     TCGA-HZ-7923     TCGA-HZ-7924 
"TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" 
    TCGA-HZ-7925     TCGA-HZ-7926     TCGA-HZ-8001     TCGA-HZ-8002 
"TEX2 WILD-TYPE" "TEX2 WILD-TYPE"   "TEX2 MUTATED" "TEX2 WILD-TYPE" 
    TCGA-HZ-8003     TCGA-HZ-8005     TCGA-HZ-8315     TCGA-HZ-8317 
"TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" 
    TCGA-HZ-8636     TCGA-HZ-8638     TCGA-HZ-A49G     TCGA-HZ-A49H 
"TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" 
    TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-IB-7644     TCGA-IB-7645 
"TEX2 WILD-TYPE"   "TEX2 MUTATED" "TEX2 WILD-TYPE"   "TEX2 MUTATED" 
    TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7651 
"TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE"   "TEX2 MUTATED" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887 
"TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" 
    TCGA-IB-7888     TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891 
"TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" 
    TCGA-IB-7893     TCGA-IB-7897     TCGA-IB-8126     TCGA-IB-8127 
"TEX2 WILD-TYPE" "TEX2 WILD-TYPE"   "TEX2 MUTATED" "TEX2 WILD-TYPE" 
    TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS 
"TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" 
    TCGA-IB-A5ST     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
"TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" 
    TCGA-PZ-A5RE     TCGA-Q3-A5QY     TCGA-US-A779     TCGA-US-A77E 
"TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" 
    TCGA-US-A77J 
"TEX2 WILD-TYPE" 
[1] "hr=" "2.3"
D78V2, continuous
                vv
clus             STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  TEX2 MUTATED          0        1         0         6         2        0
  TEX2 WILD-TYPE        1        3        11        45         0        3
D78V3, multiclass
                vv
clus             T1+T2 T3+T4
  TEX2 MUTATED       1     8
  TEX2 WILD-TYPE     5    58
D78V4, multiclass
       clus
vv      TEX2 MUTATED TEX2 WILD-TYPE
  T1+T2            1              5
  T3+T4            8             58
D78V5, binary
                cls
clus              0  1
  TEX2 MUTATED    2  7
  TEX2 WILD-TYPE 15 47
[1] "tbl2"
                cls
clus             [,1] [,2]
  TEX2 MUTATED      2    7
  TEX2 WILD-TYPE   15   47
   clus
vv  TEX2 MUTATED TEX2 WILD-TYPE
  0            2             15
  1            7             47
                vv
clus             M0 M1 MX
  TEX2 MUTATED    5  0  4
  TEX2 WILD-TYPE 34  3 26
D78V6, multiclass
    clus
vv   TEX2 MUTATED TEX2 WILD-TYPE
  M0            5             34
  M1            0              3
  MX            4             26
D78V7, binary
                cls
clus              0  1
  TEX2 MUTATED    5  4
  TEX2 WILD-TYPE 31 32
[1] "tbl2"
                cls
clus             [,1] [,2]
  TEX2 MUTATED      5    4
  TEX2 WILD-TYPE   31   32
        clus
vv       TEX2 MUTATED TEX2 WILD-TYPE
  FEMALE            5             31
  MALE              4             32
                vv
clus             PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  TEX2 MUTATED                                     8
  TEX2 WILD-TYPE                                  57
                vv
clus             PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  TEX2 MUTATED                                       1
  TEX2 WILD-TYPE                                     3
                vv
clus             PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  TEX2 MUTATED                                                  0
  TEX2 WILD-TYPE                                                2
D78V8, multiclass
                                                  clus
vv                                                 TEX2 MUTATED TEX2 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                         8             57
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                       1              3
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA            0              2
D78V9, continuous
D78V10, continuous
[1] "Remove cluster labels:" "TEX2 MUTATED"          
clus
  TEX2 MUTATED TEX2 WILD-TYPE 
             2             17 
    TCGA-FB-A4P5     TCGA-FB-A4P6     TCGA-FB-A5VM     TCGA-FB-A78T 
"TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" 
    TCGA-FB-A7DR     TCGA-H6-8124     TCGA-H8-A6C1     TCGA-IB-7644 
"TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" 
    TCGA-IB-7649     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7891 
"TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" 
    TCGA-IB-8127     TCGA-IB-A5SS     TCGA-IB-A6UG     TCGA-LB-A7SX 
"TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" "TEX2 WILD-TYPE" 
    TCGA-OE-A75W 
"TEX2 WILD-TYPE" 
                vv
clus             R0 R1 RX
  TEX2 MUTATED    6  3  0
  TEX2 WILD-TYPE 36 21  2
D78V11, multiclass
    clus
vv   TEX2 MUTATED TEX2 WILD-TYPE
  R0            6             36
  R1            3             21
  RX            0              2
D78V12, continuous

Clustering(79) Variable = ARHGAP18 MUTATION ANALYSIS
D79V1, survival
                    sevent
clus2                 0  1
  ARHGAP18 MUTATED    8  1
  ARHGAP18 WILD-TYPE 32 28
  ARHGAP18 MUTATED ARHGAP18 WILD-TYPE 
                 9                 60 
  ARHGAP18 MUTATED ARHGAP18 WILD-TYPE 
                 1                 28 
$`ARHGAP18 MUTATED`
TCGA-F2-7273 TCGA-FB-A4P6 TCGA-H8-A6C1 TCGA-HZ-8001 TCGA-HZ-8636 TCGA-HZ-A49G 
       11.84        11.93        13.02         0.62         0.16         0.76 
TCGA-HZ-A4BK TCGA-IB-7891 TCGA-IB-8126 
        1.51        16.04         0.56 

$`ARHGAP18 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H TCGA-FB-A4P5 
       10.98         9.70         7.10         5.03        19.27         0.13 
TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR TCGA-FZ-5920 TCGA-FZ-5922 
       12.66         2.47         0.03         5.46         2.01        36.20 
TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-7919 
       20.81        12.89         7.66         7.89         0.92         0.66 
TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8002 
        0.13         0.26        12.13        11.87         0.26         0.79 
TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8638 TCGA-HZ-A49H 
        0.69         3.95         0.92         0.53         2.99         0.95 
TCGA-HZ-A4BH TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 
        6.38        11.41        49.38         4.77        21.90        15.35 
TCGA-IB-7651 TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7888 
       19.82        15.65        27.98         4.04         3.62        43.79 
TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-8127 TCGA-IB-A5SO 
       15.81        19.66         3.85        15.98        17.16        10.82 
TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX 
        9.86         7.20        15.12         0.26         1.35         4.18 
TCGA-OE-A75W TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
        3.62         8.12        13.68        16.80        14.14        18.67 

  ARHGAP18 MUTATED ARHGAP18 WILD-TYPE 
              0.16               0.03 
  ARHGAP18 MUTATED ARHGAP18 WILD-TYPE 
             16.04              49.38 
  ARHGAP18 MUTATED ARHGAP18 WILD-TYPE 
             1.510              7.775 
[1] "0.2 - 16.0 (1.5)" "0.0 - 49.4 (7.8)"
        TCGA-F2-6879         TCGA-F2-6880         TCGA-F2-7273 
"ARHGAP18 WILD-TYPE" "ARHGAP18 WILD-TYPE"   "ARHGAP18 MUTATED" 
        TCGA-F2-7276         TCGA-F2-A44G         TCGA-F2-A44H 
"ARHGAP18 WILD-TYPE" "ARHGAP18 WILD-TYPE" "ARHGAP18 WILD-TYPE" 
        TCGA-FB-A4P5         TCGA-FB-A4P6         TCGA-FB-A545 
"ARHGAP18 WILD-TYPE"   "ARHGAP18 MUTATED" "ARHGAP18 WILD-TYPE" 
        TCGA-FB-A5VM         TCGA-FB-A78T         TCGA-FB-A7DR 
"ARHGAP18 WILD-TYPE" "ARHGAP18 WILD-TYPE" "ARHGAP18 WILD-TYPE" 
        TCGA-FZ-5920         TCGA-FZ-5922         TCGA-FZ-5923 
"ARHGAP18 WILD-TYPE" "ARHGAP18 WILD-TYPE" "ARHGAP18 WILD-TYPE" 
        TCGA-H6-8124         TCGA-H6-A45N         TCGA-H8-A6C1 
"ARHGAP18 WILD-TYPE" "ARHGAP18 WILD-TYPE"   "ARHGAP18 MUTATED" 
        TCGA-HZ-7289         TCGA-HZ-7918         TCGA-HZ-7919 
"ARHGAP18 WILD-TYPE" "ARHGAP18 WILD-TYPE" "ARHGAP18 WILD-TYPE" 
        TCGA-HZ-7922         TCGA-HZ-7923         TCGA-HZ-7924 
"ARHGAP18 WILD-TYPE" "ARHGAP18 WILD-TYPE" "ARHGAP18 WILD-TYPE" 
        TCGA-HZ-7925         TCGA-HZ-7926         TCGA-HZ-8001 
"ARHGAP18 WILD-TYPE" "ARHGAP18 WILD-TYPE"   "ARHGAP18 MUTATED" 
        TCGA-HZ-8002         TCGA-HZ-8003         TCGA-HZ-8005 
"ARHGAP18 WILD-TYPE" "ARHGAP18 WILD-TYPE" "ARHGAP18 WILD-TYPE" 
        TCGA-HZ-8315         TCGA-HZ-8317         TCGA-HZ-8636 
"ARHGAP18 WILD-TYPE" "ARHGAP18 WILD-TYPE"   "ARHGAP18 MUTATED" 
        TCGA-HZ-8638         TCGA-HZ-A49G         TCGA-HZ-A49H 
"ARHGAP18 WILD-TYPE"   "ARHGAP18 MUTATED" "ARHGAP18 WILD-TYPE" 
        TCGA-HZ-A4BH         TCGA-HZ-A4BK         TCGA-IB-7644 
"ARHGAP18 WILD-TYPE"   "ARHGAP18 MUTATED" "ARHGAP18 WILD-TYPE" 
        TCGA-IB-7645         TCGA-IB-7646         TCGA-IB-7647 
"ARHGAP18 WILD-TYPE" "ARHGAP18 WILD-TYPE" "ARHGAP18 WILD-TYPE" 
        TCGA-IB-7649         TCGA-IB-7651         TCGA-IB-7652 
"ARHGAP18 WILD-TYPE" "ARHGAP18 WILD-TYPE" "ARHGAP18 WILD-TYPE" 
        TCGA-IB-7885         TCGA-IB-7886         TCGA-IB-7887 
"ARHGAP18 WILD-TYPE" "ARHGAP18 WILD-TYPE" "ARHGAP18 WILD-TYPE" 
        TCGA-IB-7888         TCGA-IB-7889         TCGA-IB-7890 
"ARHGAP18 WILD-TYPE" "ARHGAP18 WILD-TYPE" "ARHGAP18 WILD-TYPE" 
        TCGA-IB-7891         TCGA-IB-7893         TCGA-IB-7897 
  "ARHGAP18 MUTATED" "ARHGAP18 WILD-TYPE" "ARHGAP18 WILD-TYPE" 
        TCGA-IB-8126         TCGA-IB-8127         TCGA-IB-A5SO 
  "ARHGAP18 MUTATED" "ARHGAP18 WILD-TYPE" "ARHGAP18 WILD-TYPE" 
        TCGA-IB-A5SP         TCGA-IB-A5SQ         TCGA-IB-A5SS 
"ARHGAP18 WILD-TYPE" "ARHGAP18 WILD-TYPE" "ARHGAP18 WILD-TYPE" 
        TCGA-IB-A5ST         TCGA-IB-A6UG         TCGA-LB-A7SX 
"ARHGAP18 WILD-TYPE" "ARHGAP18 WILD-TYPE" "ARHGAP18 WILD-TYPE" 
        TCGA-OE-A75W         TCGA-PZ-A5RE         TCGA-Q3-A5QY 
"ARHGAP18 WILD-TYPE" "ARHGAP18 WILD-TYPE" "ARHGAP18 WILD-TYPE" 
        TCGA-US-A779         TCGA-US-A77E         TCGA-US-A77J 
"ARHGAP18 WILD-TYPE" "ARHGAP18 WILD-TYPE" "ARHGAP18 WILD-TYPE" 
        TCGA-F2-6879         TCGA-F2-6880         TCGA-F2-7273 
"ARHGAP18 WILD-TYPE" "ARHGAP18 WILD-TYPE"   "ARHGAP18 MUTATED" 
        TCGA-F2-7276         TCGA-F2-A44G         TCGA-F2-A44H 
"ARHGAP18 WILD-TYPE" "ARHGAP18 WILD-TYPE" "ARHGAP18 WILD-TYPE" 
        TCGA-FB-A4P5         TCGA-FB-A4P6         TCGA-FB-A545 
"ARHGAP18 WILD-TYPE"   "ARHGAP18 MUTATED" "ARHGAP18 WILD-TYPE" 
        TCGA-FB-A5VM         TCGA-FB-A78T         TCGA-FB-A7DR 
"ARHGAP18 WILD-TYPE" "ARHGAP18 WILD-TYPE" "ARHGAP18 WILD-TYPE" 
        TCGA-FZ-5920         TCGA-FZ-5922         TCGA-FZ-5923 
"ARHGAP18 WILD-TYPE" "ARHGAP18 WILD-TYPE" "ARHGAP18 WILD-TYPE" 
        TCGA-H6-8124         TCGA-H6-A45N         TCGA-H8-A6C1 
"ARHGAP18 WILD-TYPE" "ARHGAP18 WILD-TYPE"   "ARHGAP18 MUTATED" 
        TCGA-HZ-7289         TCGA-HZ-7918         TCGA-HZ-7919 
"ARHGAP18 WILD-TYPE" "ARHGAP18 WILD-TYPE" "ARHGAP18 WILD-TYPE" 
        TCGA-HZ-7922         TCGA-HZ-7923         TCGA-HZ-7924 
"ARHGAP18 WILD-TYPE" "ARHGAP18 WILD-TYPE" "ARHGAP18 WILD-TYPE" 
        TCGA-HZ-7925         TCGA-HZ-7926         TCGA-HZ-8001 
"ARHGAP18 WILD-TYPE" "ARHGAP18 WILD-TYPE"   "ARHGAP18 MUTATED" 
        TCGA-HZ-8002         TCGA-HZ-8003         TCGA-HZ-8005 
"ARHGAP18 WILD-TYPE" "ARHGAP18 WILD-TYPE" "ARHGAP18 WILD-TYPE" 
        TCGA-HZ-8315         TCGA-HZ-8317         TCGA-HZ-8636 
"ARHGAP18 WILD-TYPE" "ARHGAP18 WILD-TYPE"   "ARHGAP18 MUTATED" 
        TCGA-HZ-8638         TCGA-HZ-A49G         TCGA-HZ-A49H 
"ARHGAP18 WILD-TYPE"   "ARHGAP18 MUTATED" "ARHGAP18 WILD-TYPE" 
        TCGA-HZ-A4BH         TCGA-HZ-A4BK         TCGA-IB-7644 
"ARHGAP18 WILD-TYPE"   "ARHGAP18 MUTATED" "ARHGAP18 WILD-TYPE" 
        TCGA-IB-7645         TCGA-IB-7646         TCGA-IB-7647 
"ARHGAP18 WILD-TYPE" "ARHGAP18 WILD-TYPE" "ARHGAP18 WILD-TYPE" 
        TCGA-IB-7649         TCGA-IB-7651         TCGA-IB-7652 
"ARHGAP18 WILD-TYPE" "ARHGAP18 WILD-TYPE" "ARHGAP18 WILD-TYPE" 
        TCGA-IB-7885         TCGA-IB-7886         TCGA-IB-7887 
"ARHGAP18 WILD-TYPE" "ARHGAP18 WILD-TYPE" "ARHGAP18 WILD-TYPE" 
        TCGA-IB-7888         TCGA-IB-7889         TCGA-IB-7890 
"ARHGAP18 WILD-TYPE" "ARHGAP18 WILD-TYPE" "ARHGAP18 WILD-TYPE" 
        TCGA-IB-7891         TCGA-IB-7893         TCGA-IB-7897 
  "ARHGAP18 MUTATED" "ARHGAP18 WILD-TYPE" "ARHGAP18 WILD-TYPE" 
        TCGA-IB-8126         TCGA-IB-8127         TCGA-IB-A5SO 
  "ARHGAP18 MUTATED" "ARHGAP18 WILD-TYPE" "ARHGAP18 WILD-TYPE" 
        TCGA-IB-A5SP         TCGA-IB-A5SQ         TCGA-IB-A5SS 
"ARHGAP18 WILD-TYPE" "ARHGAP18 WILD-TYPE" "ARHGAP18 WILD-TYPE" 
        TCGA-IB-A5ST         TCGA-IB-A6UG         TCGA-LB-A7SX 
"ARHGAP18 WILD-TYPE" "ARHGAP18 WILD-TYPE" "ARHGAP18 WILD-TYPE" 
        TCGA-OE-A75W         TCGA-PZ-A5RE         TCGA-Q3-A5QY 
"ARHGAP18 WILD-TYPE" "ARHGAP18 WILD-TYPE" "ARHGAP18 WILD-TYPE" 
        TCGA-US-A779         TCGA-US-A77E         TCGA-US-A77J 
"ARHGAP18 WILD-TYPE" "ARHGAP18 WILD-TYPE" "ARHGAP18 WILD-TYPE" 
        TCGA-F2-6879         TCGA-F2-6880         TCGA-F2-7273 
"ARHGAP18 WILD-TYPE" "ARHGAP18 WILD-TYPE"   "ARHGAP18 MUTATED" 
        TCGA-F2-7276         TCGA-F2-A44G         TCGA-F2-A44H 
"ARHGAP18 WILD-TYPE" "ARHGAP18 WILD-TYPE" "ARHGAP18 WILD-TYPE" 
        TCGA-FB-A4P5         TCGA-FB-A4P6         TCGA-FB-A545 
"ARHGAP18 WILD-TYPE"   "ARHGAP18 MUTATED" "ARHGAP18 WILD-TYPE" 
        TCGA-FB-A5VM         TCGA-FB-A78T         TCGA-FB-A7DR 
"ARHGAP18 WILD-TYPE" "ARHGAP18 WILD-TYPE" "ARHGAP18 WILD-TYPE" 
        TCGA-FZ-5920         TCGA-FZ-5922         TCGA-FZ-5923 
"ARHGAP18 WILD-TYPE" "ARHGAP18 WILD-TYPE" "ARHGAP18 WILD-TYPE" 
        TCGA-H6-8124         TCGA-H6-A45N         TCGA-H8-A6C1 
"ARHGAP18 WILD-TYPE" "ARHGAP18 WILD-TYPE"   "ARHGAP18 MUTATED" 
        TCGA-HZ-7289         TCGA-HZ-7918         TCGA-HZ-7919 
"ARHGAP18 WILD-TYPE" "ARHGAP18 WILD-TYPE" "ARHGAP18 WILD-TYPE" 
        TCGA-HZ-7922         TCGA-HZ-7923         TCGA-HZ-7924 
"ARHGAP18 WILD-TYPE" "ARHGAP18 WILD-TYPE" "ARHGAP18 WILD-TYPE" 
        TCGA-HZ-7925         TCGA-HZ-7926         TCGA-HZ-8001 
"ARHGAP18 WILD-TYPE" "ARHGAP18 WILD-TYPE"   "ARHGAP18 MUTATED" 
        TCGA-HZ-8002         TCGA-HZ-8003         TCGA-HZ-8005 
"ARHGAP18 WILD-TYPE" "ARHGAP18 WILD-TYPE" "ARHGAP18 WILD-TYPE" 
        TCGA-HZ-8315         TCGA-HZ-8317         TCGA-HZ-8636 
"ARHGAP18 WILD-TYPE" "ARHGAP18 WILD-TYPE"   "ARHGAP18 MUTATED" 
        TCGA-HZ-8638         TCGA-HZ-A49G         TCGA-HZ-A49H 
"ARHGAP18 WILD-TYPE"   "ARHGAP18 MUTATED" "ARHGAP18 WILD-TYPE" 
        TCGA-HZ-A4BH         TCGA-HZ-A4BK         TCGA-IB-7644 
"ARHGAP18 WILD-TYPE"   "ARHGAP18 MUTATED" "ARHGAP18 WILD-TYPE" 
        TCGA-IB-7645         TCGA-IB-7646         TCGA-IB-7647 
"ARHGAP18 WILD-TYPE" "ARHGAP18 WILD-TYPE" "ARHGAP18 WILD-TYPE" 
        TCGA-IB-7649         TCGA-IB-7651         TCGA-IB-7652 
"ARHGAP18 WILD-TYPE" "ARHGAP18 WILD-TYPE" "ARHGAP18 WILD-TYPE" 
        TCGA-IB-7885         TCGA-IB-7886         TCGA-IB-7887 
"ARHGAP18 WILD-TYPE" "ARHGAP18 WILD-TYPE" "ARHGAP18 WILD-TYPE" 
        TCGA-IB-7888         TCGA-IB-7889         TCGA-IB-7890 
"ARHGAP18 WILD-TYPE" "ARHGAP18 WILD-TYPE" "ARHGAP18 WILD-TYPE" 
        TCGA-IB-7891         TCGA-IB-7893         TCGA-IB-7897 
  "ARHGAP18 MUTATED" "ARHGAP18 WILD-TYPE" "ARHGAP18 WILD-TYPE" 
        TCGA-IB-8126         TCGA-IB-8127         TCGA-IB-A5SO 
  "ARHGAP18 MUTATED" "ARHGAP18 WILD-TYPE" "ARHGAP18 WILD-TYPE" 
        TCGA-IB-A5SP         TCGA-IB-A5SQ         TCGA-IB-A5SS 
"ARHGAP18 WILD-TYPE" "ARHGAP18 WILD-TYPE" "ARHGAP18 WILD-TYPE" 
        TCGA-IB-A5ST         TCGA-IB-A6UG         TCGA-LB-A7SX 
"ARHGAP18 WILD-TYPE" "ARHGAP18 WILD-TYPE" "ARHGAP18 WILD-TYPE" 
        TCGA-OE-A75W         TCGA-PZ-A5RE         TCGA-Q3-A5QY 
"ARHGAP18 WILD-TYPE" "ARHGAP18 WILD-TYPE" "ARHGAP18 WILD-TYPE" 
        TCGA-US-A779         TCGA-US-A77E         TCGA-US-A77J 
"ARHGAP18 WILD-TYPE" "ARHGAP18 WILD-TYPE" "ARHGAP18 WILD-TYPE" 
[1] "hr=" "2"  
D79V2, continuous
                    vv
clus                 STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  ARHGAP18 MUTATED          0        0         1         5         2        1
  ARHGAP18 WILD-TYPE        1        4        10        46         0        2
D79V3, multiclass
                    vv
clus                 T1+T2 T3+T4
  ARHGAP18 MUTATED       1     8
  ARHGAP18 WILD-TYPE     5    58
D79V4, multiclass
       clus
vv      ARHGAP18 MUTATED ARHGAP18 WILD-TYPE
  T1+T2                1                  5
  T3+T4                8                 58
D79V5, binary
                    cls
clus                  0  1
  ARHGAP18 MUTATED    3  6
  ARHGAP18 WILD-TYPE 14 48
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  ARHGAP18 MUTATED      3    6
  ARHGAP18 WILD-TYPE   14   48
   clus
vv  ARHGAP18 MUTATED ARHGAP18 WILD-TYPE
  0                3                 14
  1                6                 48
                    vv
clus                 M0 M1 MX
  ARHGAP18 MUTATED    3  1  5
  ARHGAP18 WILD-TYPE 36  2 25
D79V6, multiclass
    clus
vv   ARHGAP18 MUTATED ARHGAP18 WILD-TYPE
  M0                3                 36
  M1                1                  2
  MX                5                 25
D79V7, binary
                    cls
clus                  0  1
  ARHGAP18 MUTATED    3  6
  ARHGAP18 WILD-TYPE 33 30
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  ARHGAP18 MUTATED      3    6
  ARHGAP18 WILD-TYPE   33   30
        clus
vv       ARHGAP18 MUTATED ARHGAP18 WILD-TYPE
  FEMALE                3                 33
  MALE                  6                 30
                    vv
clus                 PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  ARHGAP18 MUTATED                                     7
  ARHGAP18 WILD-TYPE                                  58
                    vv
clus                 PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  ARHGAP18 MUTATED                                       2
  ARHGAP18 WILD-TYPE                                     2
                    vv
clus                 PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  ARHGAP18 MUTATED                                                  0
  ARHGAP18 WILD-TYPE                                                2
D79V8, multiclass
                                                  clus
vv                                                 ARHGAP18 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                             7
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                           2
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                0
                                                  clus
vv                                                 ARHGAP18 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                              58
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                             2
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                  2
D79V9, continuous
D79V10, continuous
                    vv
clus                 R0 R1 RX
  ARHGAP18 MUTATED    3  5  0
  ARHGAP18 WILD-TYPE 39 19  2
D79V11, multiclass
    clus
vv   ARHGAP18 MUTATED ARHGAP18 WILD-TYPE
  R0                3                 39
  R1                5                 19
  RX                0                  2
D79V12, continuous

Clustering(80) Variable = TMEM175 MUTATION ANALYSIS
D80V1, survival
                   sevent
clus2                0  1
  TMEM175 MUTATED    5  5
  TMEM175 WILD-TYPE 35 24
  TMEM175 MUTATED TMEM175 WILD-TYPE 
               10                59 
  TMEM175 MUTATED TMEM175 WILD-TYPE 
                5                24 
$`TMEM175 MUTATED`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7276 TCGA-F2-A44H TCGA-HZ-8002 TCGA-HZ-8638 
       10.98         9.70         7.10        19.27         0.79         2.99 
TCGA-IB-7644 TCGA-IB-7649 TCGA-IB-7651 TCGA-IB-7885 
       11.41        15.35        19.82        27.98 

$`TMEM175 WILD-TYPE`
TCGA-F2-7273 TCGA-F2-A44G TCGA-FB-A4P5 TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM 
       11.84         5.03         0.13        11.93        12.66         2.47 
TCGA-FB-A78T TCGA-FB-A7DR TCGA-FZ-5920 TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 
        0.03         5.46         2.01        36.20        20.81        12.89 
TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7922 
        7.66        13.02         7.89         0.92         0.66         0.13 
TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8003 
        0.26        12.13        11.87         0.26         0.62         0.69 
TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8636 TCGA-HZ-A49G TCGA-HZ-A49H 
        3.95         0.92         0.53         0.16         0.76         0.95 
TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7652 
        6.38         1.51        49.38         4.77        21.90        15.65 
TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 
        4.04         3.62        43.79        15.81        19.66        16.04 
TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP 
        3.85        15.98         0.56        17.16        10.82         9.86 
TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W 
        7.20        15.12         0.26         1.35         4.18         3.62 
TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
        8.12        13.68        16.80        14.14        18.67 

  TMEM175 MUTATED TMEM175 WILD-TYPE 
             0.79              0.03 
  TMEM175 MUTATED TMEM175 WILD-TYPE 
            27.98             49.38 
  TMEM175 MUTATED TMEM175 WILD-TYPE 
           11.195             6.380 
[1] "0.8 - 28.0 (11.2)" "0.0 - 49.4 (6.4)" 
       TCGA-F2-6879        TCGA-F2-6880        TCGA-F2-7273        TCGA-F2-7276 
  "TMEM175 MUTATED"   "TMEM175 MUTATED" "TMEM175 WILD-TYPE"   "TMEM175 MUTATED" 
       TCGA-F2-A44G        TCGA-F2-A44H        TCGA-FB-A4P5        TCGA-FB-A4P6 
"TMEM175 WILD-TYPE"   "TMEM175 MUTATED" "TMEM175 WILD-TYPE" "TMEM175 WILD-TYPE" 
       TCGA-FB-A545        TCGA-FB-A5VM        TCGA-FB-A78T        TCGA-FB-A7DR 
"TMEM175 WILD-TYPE" "TMEM175 WILD-TYPE" "TMEM175 WILD-TYPE" "TMEM175 WILD-TYPE" 
       TCGA-FZ-5920        TCGA-FZ-5922        TCGA-FZ-5923        TCGA-H6-8124 
"TMEM175 WILD-TYPE" "TMEM175 WILD-TYPE" "TMEM175 WILD-TYPE" "TMEM175 WILD-TYPE" 
       TCGA-H6-A45N        TCGA-H8-A6C1        TCGA-HZ-7289        TCGA-HZ-7918 
"TMEM175 WILD-TYPE" "TMEM175 WILD-TYPE" "TMEM175 WILD-TYPE" "TMEM175 WILD-TYPE" 
       TCGA-HZ-7919        TCGA-HZ-7922        TCGA-HZ-7923        TCGA-HZ-7924 
"TMEM175 WILD-TYPE" "TMEM175 WILD-TYPE" "TMEM175 WILD-TYPE" "TMEM175 WILD-TYPE" 
       TCGA-HZ-7925        TCGA-HZ-7926        TCGA-HZ-8001        TCGA-HZ-8002 
"TMEM175 WILD-TYPE" "TMEM175 WILD-TYPE" "TMEM175 WILD-TYPE"   "TMEM175 MUTATED" 
       TCGA-HZ-8003        TCGA-HZ-8005        TCGA-HZ-8315        TCGA-HZ-8317 
"TMEM175 WILD-TYPE" "TMEM175 WILD-TYPE" "TMEM175 WILD-TYPE" "TMEM175 WILD-TYPE" 
       TCGA-HZ-8636        TCGA-HZ-8638        TCGA-HZ-A49G        TCGA-HZ-A49H 
"TMEM175 WILD-TYPE"   "TMEM175 MUTATED" "TMEM175 WILD-TYPE" "TMEM175 WILD-TYPE" 
       TCGA-HZ-A4BH        TCGA-HZ-A4BK        TCGA-IB-7644        TCGA-IB-7645 
"TMEM175 WILD-TYPE" "TMEM175 WILD-TYPE"   "TMEM175 MUTATED" "TMEM175 WILD-TYPE" 
       TCGA-IB-7646        TCGA-IB-7647        TCGA-IB-7649        TCGA-IB-7651 
"TMEM175 WILD-TYPE" "TMEM175 WILD-TYPE"   "TMEM175 MUTATED"   "TMEM175 MUTATED" 
       TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-7886        TCGA-IB-7887 
"TMEM175 WILD-TYPE"   "TMEM175 MUTATED" "TMEM175 WILD-TYPE" "TMEM175 WILD-TYPE" 
       TCGA-IB-7888        TCGA-IB-7889        TCGA-IB-7890        TCGA-IB-7891 
"TMEM175 WILD-TYPE" "TMEM175 WILD-TYPE" "TMEM175 WILD-TYPE" "TMEM175 WILD-TYPE" 
       TCGA-IB-7893        TCGA-IB-7897        TCGA-IB-8126        TCGA-IB-8127 
"TMEM175 WILD-TYPE" "TMEM175 WILD-TYPE" "TMEM175 WILD-TYPE" "TMEM175 WILD-TYPE" 
       TCGA-IB-A5SO        TCGA-IB-A5SP        TCGA-IB-A5SQ        TCGA-IB-A5SS 
"TMEM175 WILD-TYPE" "TMEM175 WILD-TYPE" "TMEM175 WILD-TYPE" "TMEM175 WILD-TYPE" 
       TCGA-IB-A5ST        TCGA-IB-A6UG        TCGA-LB-A7SX        TCGA-OE-A75W 
"TMEM175 WILD-TYPE" "TMEM175 WILD-TYPE" "TMEM175 WILD-TYPE" "TMEM175 WILD-TYPE" 
       TCGA-PZ-A5RE        TCGA-Q3-A5QY        TCGA-US-A779        TCGA-US-A77E 
"TMEM175 WILD-TYPE" "TMEM175 WILD-TYPE" "TMEM175 WILD-TYPE" "TMEM175 WILD-TYPE" 
       TCGA-US-A77J 
"TMEM175 WILD-TYPE" 
       TCGA-F2-6879        TCGA-F2-6880        TCGA-F2-7273        TCGA-F2-7276 
  "TMEM175 MUTATED"   "TMEM175 MUTATED" "TMEM175 WILD-TYPE"   "TMEM175 MUTATED" 
       TCGA-F2-A44G        TCGA-F2-A44H        TCGA-FB-A4P5        TCGA-FB-A4P6 
"TMEM175 WILD-TYPE"   "TMEM175 MUTATED" "TMEM175 WILD-TYPE" "TMEM175 WILD-TYPE" 
       TCGA-FB-A545        TCGA-FB-A5VM        TCGA-FB-A78T        TCGA-FB-A7DR 
"TMEM175 WILD-TYPE" "TMEM175 WILD-TYPE" "TMEM175 WILD-TYPE" "TMEM175 WILD-TYPE" 
       TCGA-FZ-5920        TCGA-FZ-5922        TCGA-FZ-5923        TCGA-H6-8124 
"TMEM175 WILD-TYPE" "TMEM175 WILD-TYPE" "TMEM175 WILD-TYPE" "TMEM175 WILD-TYPE" 
       TCGA-H6-A45N        TCGA-H8-A6C1        TCGA-HZ-7289        TCGA-HZ-7918 
"TMEM175 WILD-TYPE" "TMEM175 WILD-TYPE" "TMEM175 WILD-TYPE" "TMEM175 WILD-TYPE" 
       TCGA-HZ-7919        TCGA-HZ-7922        TCGA-HZ-7923        TCGA-HZ-7924 
"TMEM175 WILD-TYPE" "TMEM175 WILD-TYPE" "TMEM175 WILD-TYPE" "TMEM175 WILD-TYPE" 
       TCGA-HZ-7925        TCGA-HZ-7926        TCGA-HZ-8001        TCGA-HZ-8002 
"TMEM175 WILD-TYPE" "TMEM175 WILD-TYPE" "TMEM175 WILD-TYPE"   "TMEM175 MUTATED" 
       TCGA-HZ-8003        TCGA-HZ-8005        TCGA-HZ-8315        TCGA-HZ-8317 
"TMEM175 WILD-TYPE" "TMEM175 WILD-TYPE" "TMEM175 WILD-TYPE" "TMEM175 WILD-TYPE" 
       TCGA-HZ-8636        TCGA-HZ-8638        TCGA-HZ-A49G        TCGA-HZ-A49H 
"TMEM175 WILD-TYPE"   "TMEM175 MUTATED" "TMEM175 WILD-TYPE" "TMEM175 WILD-TYPE" 
       TCGA-HZ-A4BH        TCGA-HZ-A4BK        TCGA-IB-7644        TCGA-IB-7645 
"TMEM175 WILD-TYPE" "TMEM175 WILD-TYPE"   "TMEM175 MUTATED" "TMEM175 WILD-TYPE" 
       TCGA-IB-7646        TCGA-IB-7647        TCGA-IB-7649        TCGA-IB-7651 
"TMEM175 WILD-TYPE" "TMEM175 WILD-TYPE"   "TMEM175 MUTATED"   "TMEM175 MUTATED" 
       TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-7886        TCGA-IB-7887 
"TMEM175 WILD-TYPE"   "TMEM175 MUTATED" "TMEM175 WILD-TYPE" "TMEM175 WILD-TYPE" 
       TCGA-IB-7888        TCGA-IB-7889        TCGA-IB-7890        TCGA-IB-7891 
"TMEM175 WILD-TYPE" "TMEM175 WILD-TYPE" "TMEM175 WILD-TYPE" "TMEM175 WILD-TYPE" 
       TCGA-IB-7893        TCGA-IB-7897        TCGA-IB-8126        TCGA-IB-8127 
"TMEM175 WILD-TYPE" "TMEM175 WILD-TYPE" "TMEM175 WILD-TYPE" "TMEM175 WILD-TYPE" 
       TCGA-IB-A5SO        TCGA-IB-A5SP        TCGA-IB-A5SQ        TCGA-IB-A5SS 
"TMEM175 WILD-TYPE" "TMEM175 WILD-TYPE" "TMEM175 WILD-TYPE" "TMEM175 WILD-TYPE" 
       TCGA-IB-A5ST        TCGA-IB-A6UG        TCGA-LB-A7SX        TCGA-OE-A75W 
"TMEM175 WILD-TYPE" "TMEM175 WILD-TYPE" "TMEM175 WILD-TYPE" "TMEM175 WILD-TYPE" 
       TCGA-PZ-A5RE        TCGA-Q3-A5QY        TCGA-US-A779        TCGA-US-A77E 
"TMEM175 WILD-TYPE" "TMEM175 WILD-TYPE" "TMEM175 WILD-TYPE" "TMEM175 WILD-TYPE" 
       TCGA-US-A77J 
"TMEM175 WILD-TYPE" 
       TCGA-F2-6879        TCGA-F2-6880        TCGA-F2-7273        TCGA-F2-7276 
  "TMEM175 MUTATED"   "TMEM175 MUTATED" "TMEM175 WILD-TYPE"   "TMEM175 MUTATED" 
       TCGA-F2-A44G        TCGA-F2-A44H        TCGA-FB-A4P5        TCGA-FB-A4P6 
"TMEM175 WILD-TYPE"   "TMEM175 MUTATED" "TMEM175 WILD-TYPE" "TMEM175 WILD-TYPE" 
       TCGA-FB-A545        TCGA-FB-A5VM        TCGA-FB-A78T        TCGA-FB-A7DR 
"TMEM175 WILD-TYPE" "TMEM175 WILD-TYPE" "TMEM175 WILD-TYPE" "TMEM175 WILD-TYPE" 
       TCGA-FZ-5920        TCGA-FZ-5922        TCGA-FZ-5923        TCGA-H6-8124 
"TMEM175 WILD-TYPE" "TMEM175 WILD-TYPE" "TMEM175 WILD-TYPE" "TMEM175 WILD-TYPE" 
       TCGA-H6-A45N        TCGA-H8-A6C1        TCGA-HZ-7289        TCGA-HZ-7918 
"TMEM175 WILD-TYPE" "TMEM175 WILD-TYPE" "TMEM175 WILD-TYPE" "TMEM175 WILD-TYPE" 
       TCGA-HZ-7919        TCGA-HZ-7922        TCGA-HZ-7923        TCGA-HZ-7924 
"TMEM175 WILD-TYPE" "TMEM175 WILD-TYPE" "TMEM175 WILD-TYPE" "TMEM175 WILD-TYPE" 
       TCGA-HZ-7925        TCGA-HZ-7926        TCGA-HZ-8001        TCGA-HZ-8002 
"TMEM175 WILD-TYPE" "TMEM175 WILD-TYPE" "TMEM175 WILD-TYPE"   "TMEM175 MUTATED" 
       TCGA-HZ-8003        TCGA-HZ-8005        TCGA-HZ-8315        TCGA-HZ-8317 
"TMEM175 WILD-TYPE" "TMEM175 WILD-TYPE" "TMEM175 WILD-TYPE" "TMEM175 WILD-TYPE" 
       TCGA-HZ-8636        TCGA-HZ-8638        TCGA-HZ-A49G        TCGA-HZ-A49H 
"TMEM175 WILD-TYPE"   "TMEM175 MUTATED" "TMEM175 WILD-TYPE" "TMEM175 WILD-TYPE" 
       TCGA-HZ-A4BH        TCGA-HZ-A4BK        TCGA-IB-7644        TCGA-IB-7645 
"TMEM175 WILD-TYPE" "TMEM175 WILD-TYPE"   "TMEM175 MUTATED" "TMEM175 WILD-TYPE" 
       TCGA-IB-7646        TCGA-IB-7647        TCGA-IB-7649        TCGA-IB-7651 
"TMEM175 WILD-TYPE" "TMEM175 WILD-TYPE"   "TMEM175 MUTATED"   "TMEM175 MUTATED" 
       TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-7886        TCGA-IB-7887 
"TMEM175 WILD-TYPE"   "TMEM175 MUTATED" "TMEM175 WILD-TYPE" "TMEM175 WILD-TYPE" 
       TCGA-IB-7888        TCGA-IB-7889        TCGA-IB-7890        TCGA-IB-7891 
"TMEM175 WILD-TYPE" "TMEM175 WILD-TYPE" "TMEM175 WILD-TYPE" "TMEM175 WILD-TYPE" 
       TCGA-IB-7893        TCGA-IB-7897        TCGA-IB-8126        TCGA-IB-8127 
"TMEM175 WILD-TYPE" "TMEM175 WILD-TYPE" "TMEM175 WILD-TYPE" "TMEM175 WILD-TYPE" 
       TCGA-IB-A5SO        TCGA-IB-A5SP        TCGA-IB-A5SQ        TCGA-IB-A5SS 
"TMEM175 WILD-TYPE" "TMEM175 WILD-TYPE" "TMEM175 WILD-TYPE" "TMEM175 WILD-TYPE" 
       TCGA-IB-A5ST        TCGA-IB-A6UG        TCGA-LB-A7SX        TCGA-OE-A75W 
"TMEM175 WILD-TYPE" "TMEM175 WILD-TYPE" "TMEM175 WILD-TYPE" "TMEM175 WILD-TYPE" 
       TCGA-PZ-A5RE        TCGA-Q3-A5QY        TCGA-US-A779        TCGA-US-A77E 
"TMEM175 WILD-TYPE" "TMEM175 WILD-TYPE" "TMEM175 WILD-TYPE" "TMEM175 WILD-TYPE" 
       TCGA-US-A77J 
"TMEM175 WILD-TYPE" 
[1] "hr=" "1.1"
D80V2, continuous
                   vv
clus                STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  TMEM175 MUTATED          1        0         1         7         0        1
  TMEM175 WILD-TYPE        0        4        10        44         2        2
D80V3, multiclass
                   vv
clus                T1+T2 T3+T4
  TMEM175 MUTATED       1     9
  TMEM175 WILD-TYPE     5    57
D80V4, multiclass
       clus
vv      TMEM175 MUTATED TMEM175 WILD-TYPE
  T1+T2               1                 5
  T3+T4               9                57
D80V5, binary
                   cls
clus                 0  1
  TMEM175 MUTATED    2  8
  TMEM175 WILD-TYPE 15 46
[1] "tbl2"
                   cls
clus                [,1] [,2]
  TMEM175 MUTATED      2    8
  TMEM175 WILD-TYPE   15   46
   clus
vv  TMEM175 MUTATED TMEM175 WILD-TYPE
  0               2                15
  1               8                46
                   vv
clus                M0 M1 MX
  TMEM175 MUTATED    7  1  2
  TMEM175 WILD-TYPE 32  2 28
D80V6, multiclass
    clus
vv   TMEM175 MUTATED TMEM175 WILD-TYPE
  M0               7                32
  M1               1                 2
  MX               2                28
D80V7, binary
                   cls
clus                 0  1
  TMEM175 MUTATED    5  5
  TMEM175 WILD-TYPE 31 31
[1] "tbl2"
                   cls
clus                [,1] [,2]
  TMEM175 MUTATED      5    5
  TMEM175 WILD-TYPE   31   31
        clus
vv       TMEM175 MUTATED TMEM175 WILD-TYPE
  FEMALE               5                31
  MALE                 5                31
                   vv
clus                PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  TMEM175 MUTATED                                     8
  TMEM175 WILD-TYPE                                  57
                   vv
clus                PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  TMEM175 MUTATED                                       0
  TMEM175 WILD-TYPE                                     4
                   vv
clus                PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  TMEM175 MUTATED                                                  1
  TMEM175 WILD-TYPE                                                1
D80V8, multiclass
                                                  clus
vv                                                 TMEM175 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                            8
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                          0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA               1
                                                  clus
vv                                                 TMEM175 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                             57
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                            4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                 1
D80V9, continuous
D80V10, continuous
                   vv
clus                R0 R1 RX
  TMEM175 MUTATED    8  2  0
  TMEM175 WILD-TYPE 34 22  2
D80V11, multiclass
    clus
vv   TMEM175 MUTATED TMEM175 WILD-TYPE
  R0               8                34
  R1               2                22
  RX               0                 2
D80V12, continuous

Clustering(81) Variable = CDKN2A MUTATION ANALYSIS
D81V1, survival
                  sevent
clus2               0  1
  CDKN2A MUTATED    8  8
  CDKN2A WILD-TYPE 32 21
  CDKN2A MUTATED CDKN2A WILD-TYPE 
              16               53 
  CDKN2A MUTATED CDKN2A WILD-TYPE 
               8               21 
$`CDKN2A MUTATED`
TCGA-F2-6879 TCGA-FB-A545 TCGA-FZ-5920 TCGA-H6-8124 TCGA-HZ-7926 TCGA-HZ-8005 
       10.98        12.66         2.01        12.89         0.26         3.95 
TCGA-HZ-A49G TCGA-HZ-A4BH TCGA-IB-7649 TCGA-IB-7886 TCGA-IB-7889 TCGA-IB-7891 
        0.76         6.38        15.35         4.04        15.81        16.04 
TCGA-IB-8127 TCGA-IB-A5SS TCGA-IB-A6UG TCGA-OE-A75W 
       17.16        15.12         1.35         3.62 

$`CDKN2A WILD-TYPE`
TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H TCGA-FB-A4P5 
        9.70        11.84         7.10         5.03        19.27         0.13 
TCGA-FB-A4P6 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR TCGA-FZ-5922 TCGA-FZ-5923 
       11.93         2.47         0.03         5.46        36.20        20.81 
TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7922 
        7.66        13.02         7.89         0.92         0.66         0.13 
TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 
        0.26        12.13        11.87         0.62         0.79         0.69 
TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49H TCGA-HZ-A4BK 
        0.92         0.53         0.16         2.99         0.95         1.51 
TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7651 TCGA-IB-7652 
       11.41        49.38         4.77        21.90        19.82        15.65 
TCGA-IB-7885 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7890 TCGA-IB-7893 TCGA-IB-7897 
       27.98         3.62        43.79        19.66         3.85        15.98 
TCGA-IB-8126 TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5ST TCGA-LB-A7SX 
        0.56        10.82         9.86         7.20         0.26         4.18 
TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
        8.12        13.68        16.80        14.14        18.67 

  CDKN2A MUTATED CDKN2A WILD-TYPE 
            0.26             0.03 
  CDKN2A MUTATED CDKN2A WILD-TYPE 
           17.16            49.38 
  CDKN2A MUTATED CDKN2A WILD-TYPE 
            8.68             7.66 
[1] "0.3 - 17.2 (8.7)" "0.0 - 49.4 (7.7)"
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
  "CDKN2A MUTATED" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
  "CDKN2A MUTATED" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
  "CDKN2A MUTATED" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE"   "CDKN2A MUTATED" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"CDKN2A WILD-TYPE"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
"CDKN2A WILD-TYPE"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
  "CDKN2A MUTATED" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
"CDKN2A WILD-TYPE"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE"   "CDKN2A MUTATED" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE"   "CDKN2A MUTATED" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE"   "CDKN2A MUTATED" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"CDKN2A WILD-TYPE"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE"   "CDKN2A MUTATED" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-US-A77J 
"CDKN2A WILD-TYPE" 
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
  "CDKN2A MUTATED" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
  "CDKN2A MUTATED" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
  "CDKN2A MUTATED" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE"   "CDKN2A MUTATED" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"CDKN2A WILD-TYPE"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
"CDKN2A WILD-TYPE"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
  "CDKN2A MUTATED" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
"CDKN2A WILD-TYPE"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE"   "CDKN2A MUTATED" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE"   "CDKN2A MUTATED" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE"   "CDKN2A MUTATED" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"CDKN2A WILD-TYPE"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE"   "CDKN2A MUTATED" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-US-A77J 
"CDKN2A WILD-TYPE" 
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
  "CDKN2A MUTATED" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
  "CDKN2A MUTATED" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
  "CDKN2A MUTATED" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE"   "CDKN2A MUTATED" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"CDKN2A WILD-TYPE"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
"CDKN2A WILD-TYPE"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
  "CDKN2A MUTATED" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
"CDKN2A WILD-TYPE"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE"   "CDKN2A MUTATED" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE"   "CDKN2A MUTATED" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE"   "CDKN2A MUTATED" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"CDKN2A WILD-TYPE"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE"   "CDKN2A MUTATED" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-US-A77J 
"CDKN2A WILD-TYPE" 
[1] "hr=" "2.1"
D81V2, continuous
                  vv
clus               STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  CDKN2A MUTATED          0        0         1        15         0        0
  CDKN2A WILD-TYPE        1        4        10        36         2        3
D81V3, multiclass
                  vv
clus               T1+T2 T3+T4
  CDKN2A MUTATED       1    15
  CDKN2A WILD-TYPE     5    51
D81V4, multiclass
       clus
vv      CDKN2A MUTATED CDKN2A WILD-TYPE
  T1+T2              1                5
  T3+T4             15               51
D81V5, binary
                  cls
clus                0  1
  CDKN2A MUTATED    1 15
  CDKN2A WILD-TYPE 16 39
[1] "tbl2"
                  cls
clus               [,1] [,2]
  CDKN2A MUTATED      1   15
  CDKN2A WILD-TYPE   16   39
   clus
vv  CDKN2A MUTATED CDKN2A WILD-TYPE
  0              1               16
  1             15               39
                  vv
clus               M0 M1 MX
  CDKN2A MUTATED   12  0  4
  CDKN2A WILD-TYPE 27  3 26
D81V6, multiclass
    clus
vv   CDKN2A MUTATED CDKN2A WILD-TYPE
  M0             12               27
  M1              0                3
  MX              4               26
D81V7, binary
                  cls
clus                0  1
  CDKN2A MUTATED    6 10
  CDKN2A WILD-TYPE 30 26
[1] "tbl2"
                  cls
clus               [,1] [,2]
  CDKN2A MUTATED      6   10
  CDKN2A WILD-TYPE   30   26
        clus
vv       CDKN2A MUTATED CDKN2A WILD-TYPE
  FEMALE              6               30
  MALE               10               26
                  vv
clus               PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  CDKN2A MUTATED                                    15
  CDKN2A WILD-TYPE                                  50
                  vv
clus               PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  CDKN2A MUTATED                                       0
  CDKN2A WILD-TYPE                                     4
                  vv
clus               PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  CDKN2A MUTATED                                                  0
  CDKN2A WILD-TYPE                                                2
D81V8, multiclass
                                                  clus
vv                                                 CDKN2A MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                          15
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                         0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA              0
                                                  clus
vv                                                 CDKN2A WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                            50
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                           4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                2
D81V9, continuous
D81V10, continuous
                  vv
clus               R0 R1 RX
  CDKN2A MUTATED    7  7  1
  CDKN2A WILD-TYPE 35 17  1
D81V11, multiclass
    clus
vv   CDKN2A MUTATED CDKN2A WILD-TYPE
  R0              7               35
  R1              7               17
  RX              1                1
D81V12, continuous

Clustering(82) Variable = CBR3 MUTATION ANALYSIS
D82V1, survival
                sevent
clus2             0  1
  CBR3 MUTATED    1  3
  CBR3 WILD-TYPE 39 26
  CBR3 MUTATED CBR3 WILD-TYPE 
             4             65 
  CBR3 MUTATED CBR3 WILD-TYPE 
             3             26 
$`CBR3 MUTATED`
TCGA-FB-A7DR TCGA-IB-7886 TCGA-IB-7890 TCGA-US-A779 
        5.46         4.04        19.66        16.80 

$`CBR3 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P5 TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FZ-5920 
        0.13        11.93        12.66         2.47         0.03         2.01 
TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7289 
       36.20        20.81        12.89         7.66        13.02         7.89 
TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 
        0.92         0.66         0.13         0.26        12.13        11.87 
TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 
        0.26         0.62         0.79         0.69         3.95         0.92 
TCGA-HZ-8317 TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH 
        0.53         0.16         2.99         0.76         0.95         6.38 
TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 
        1.51        11.41        49.38         4.77        21.90        15.35 
TCGA-IB-7651 TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 
       19.82        15.65        27.98         3.62        43.79        15.81 
TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO 
       16.04         3.85        15.98         0.56        17.16        10.82 
TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX 
        9.86         7.20        15.12         0.26         1.35         4.18 
TCGA-OE-A75W TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A77E TCGA-US-A77J 
        3.62         8.12        13.68        14.14        18.67 

  CBR3 MUTATED CBR3 WILD-TYPE 
          4.04           0.03 
  CBR3 MUTATED CBR3 WILD-TYPE 
         19.66          49.38 
  CBR3 MUTATED CBR3 WILD-TYPE 
         11.13           7.66 
[1] "4.0 - 19.7 (11.1)" "0.0 - 49.4 (7.7)" 
    TCGA-F2-6879     TCGA-F2-6880     TCGA-F2-7273     TCGA-F2-7276 
"CBR3 WILD-TYPE" "CBR3 WILD-TYPE" "CBR3 WILD-TYPE" "CBR3 WILD-TYPE" 
    TCGA-F2-A44G     TCGA-F2-A44H     TCGA-FB-A4P5     TCGA-FB-A4P6 
"CBR3 WILD-TYPE" "CBR3 WILD-TYPE" "CBR3 WILD-TYPE" "CBR3 WILD-TYPE" 
    TCGA-FB-A545     TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-FB-A7DR 
"CBR3 WILD-TYPE" "CBR3 WILD-TYPE" "CBR3 WILD-TYPE"   "CBR3 MUTATED" 
    TCGA-FZ-5920     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-H6-8124 
"CBR3 WILD-TYPE" "CBR3 WILD-TYPE" "CBR3 WILD-TYPE" "CBR3 WILD-TYPE" 
    TCGA-H6-A45N     TCGA-H8-A6C1     TCGA-HZ-7289     TCGA-HZ-7918 
"CBR3 WILD-TYPE" "CBR3 WILD-TYPE" "CBR3 WILD-TYPE" "CBR3 WILD-TYPE" 
    TCGA-HZ-7919     TCGA-HZ-7922     TCGA-HZ-7923     TCGA-HZ-7924 
"CBR3 WILD-TYPE" "CBR3 WILD-TYPE" "CBR3 WILD-TYPE" "CBR3 WILD-TYPE" 
    TCGA-HZ-7925     TCGA-HZ-7926     TCGA-HZ-8001     TCGA-HZ-8002 
"CBR3 WILD-TYPE" "CBR3 WILD-TYPE" "CBR3 WILD-TYPE" "CBR3 WILD-TYPE" 
    TCGA-HZ-8003     TCGA-HZ-8005     TCGA-HZ-8315     TCGA-HZ-8317 
"CBR3 WILD-TYPE" "CBR3 WILD-TYPE" "CBR3 WILD-TYPE" "CBR3 WILD-TYPE" 
    TCGA-HZ-8636     TCGA-HZ-8638     TCGA-HZ-A49G     TCGA-HZ-A49H 
"CBR3 WILD-TYPE" "CBR3 WILD-TYPE" "CBR3 WILD-TYPE" "CBR3 WILD-TYPE" 
    TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-IB-7644     TCGA-IB-7645 
"CBR3 WILD-TYPE" "CBR3 WILD-TYPE" "CBR3 WILD-TYPE" "CBR3 WILD-TYPE" 
    TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7651 
"CBR3 WILD-TYPE" "CBR3 WILD-TYPE" "CBR3 WILD-TYPE" "CBR3 WILD-TYPE" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887 
"CBR3 WILD-TYPE" "CBR3 WILD-TYPE"   "CBR3 MUTATED" "CBR3 WILD-TYPE" 
    TCGA-IB-7888     TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891 
"CBR3 WILD-TYPE" "CBR3 WILD-TYPE"   "CBR3 MUTATED" "CBR3 WILD-TYPE" 
    TCGA-IB-7893     TCGA-IB-7897     TCGA-IB-8126     TCGA-IB-8127 
"CBR3 WILD-TYPE" "CBR3 WILD-TYPE" "CBR3 WILD-TYPE" "CBR3 WILD-TYPE" 
    TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS 
"CBR3 WILD-TYPE" "CBR3 WILD-TYPE" "CBR3 WILD-TYPE" "CBR3 WILD-TYPE" 
    TCGA-IB-A5ST     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
"CBR3 WILD-TYPE" "CBR3 WILD-TYPE" "CBR3 WILD-TYPE" "CBR3 WILD-TYPE" 
    TCGA-PZ-A5RE     TCGA-Q3-A5QY     TCGA-US-A779     TCGA-US-A77E 
"CBR3 WILD-TYPE" "CBR3 WILD-TYPE"   "CBR3 MUTATED" "CBR3 WILD-TYPE" 
    TCGA-US-A77J 
"CBR3 WILD-TYPE" 
    TCGA-F2-6879     TCGA-F2-6880     TCGA-F2-7273     TCGA-F2-7276 
"CBR3 WILD-TYPE" "CBR3 WILD-TYPE" "CBR3 WILD-TYPE" "CBR3 WILD-TYPE" 
    TCGA-F2-A44G     TCGA-F2-A44H     TCGA-FB-A4P5     TCGA-FB-A4P6 
"CBR3 WILD-TYPE" "CBR3 WILD-TYPE" "CBR3 WILD-TYPE" "CBR3 WILD-TYPE" 
    TCGA-FB-A545     TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-FB-A7DR 
"CBR3 WILD-TYPE" "CBR3 WILD-TYPE" "CBR3 WILD-TYPE"   "CBR3 MUTATED" 
    TCGA-FZ-5920     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-H6-8124 
"CBR3 WILD-TYPE" "CBR3 WILD-TYPE" "CBR3 WILD-TYPE" "CBR3 WILD-TYPE" 
    TCGA-H6-A45N     TCGA-H8-A6C1     TCGA-HZ-7289     TCGA-HZ-7918 
"CBR3 WILD-TYPE" "CBR3 WILD-TYPE" "CBR3 WILD-TYPE" "CBR3 WILD-TYPE" 
    TCGA-HZ-7919     TCGA-HZ-7922     TCGA-HZ-7923     TCGA-HZ-7924 
"CBR3 WILD-TYPE" "CBR3 WILD-TYPE" "CBR3 WILD-TYPE" "CBR3 WILD-TYPE" 
    TCGA-HZ-7925     TCGA-HZ-7926     TCGA-HZ-8001     TCGA-HZ-8002 
"CBR3 WILD-TYPE" "CBR3 WILD-TYPE" "CBR3 WILD-TYPE" "CBR3 WILD-TYPE" 
    TCGA-HZ-8003     TCGA-HZ-8005     TCGA-HZ-8315     TCGA-HZ-8317 
"CBR3 WILD-TYPE" "CBR3 WILD-TYPE" "CBR3 WILD-TYPE" "CBR3 WILD-TYPE" 
    TCGA-HZ-8636     TCGA-HZ-8638     TCGA-HZ-A49G     TCGA-HZ-A49H 
"CBR3 WILD-TYPE" "CBR3 WILD-TYPE" "CBR3 WILD-TYPE" "CBR3 WILD-TYPE" 
    TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-IB-7644     TCGA-IB-7645 
"CBR3 WILD-TYPE" "CBR3 WILD-TYPE" "CBR3 WILD-TYPE" "CBR3 WILD-TYPE" 
    TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7651 
"CBR3 WILD-TYPE" "CBR3 WILD-TYPE" "CBR3 WILD-TYPE" "CBR3 WILD-TYPE" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887 
"CBR3 WILD-TYPE" "CBR3 WILD-TYPE"   "CBR3 MUTATED" "CBR3 WILD-TYPE" 
    TCGA-IB-7888     TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891 
"CBR3 WILD-TYPE" "CBR3 WILD-TYPE"   "CBR3 MUTATED" "CBR3 WILD-TYPE" 
    TCGA-IB-7893     TCGA-IB-7897     TCGA-IB-8126     TCGA-IB-8127 
"CBR3 WILD-TYPE" "CBR3 WILD-TYPE" "CBR3 WILD-TYPE" "CBR3 WILD-TYPE" 
    TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS 
"CBR3 WILD-TYPE" "CBR3 WILD-TYPE" "CBR3 WILD-TYPE" "CBR3 WILD-TYPE" 
    TCGA-IB-A5ST     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
"CBR3 WILD-TYPE" "CBR3 WILD-TYPE" "CBR3 WILD-TYPE" "CBR3 WILD-TYPE" 
    TCGA-PZ-A5RE     TCGA-Q3-A5QY     TCGA-US-A779     TCGA-US-A77E 
"CBR3 WILD-TYPE" "CBR3 WILD-TYPE"   "CBR3 MUTATED" "CBR3 WILD-TYPE" 
    TCGA-US-A77J 
"CBR3 WILD-TYPE" 
    TCGA-F2-6879     TCGA-F2-6880     TCGA-F2-7273     TCGA-F2-7276 
"CBR3 WILD-TYPE" "CBR3 WILD-TYPE" "CBR3 WILD-TYPE" "CBR3 WILD-TYPE" 
    TCGA-F2-A44G     TCGA-F2-A44H     TCGA-FB-A4P5     TCGA-FB-A4P6 
"CBR3 WILD-TYPE" "CBR3 WILD-TYPE" "CBR3 WILD-TYPE" "CBR3 WILD-TYPE" 
    TCGA-FB-A545     TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-FB-A7DR 
"CBR3 WILD-TYPE" "CBR3 WILD-TYPE" "CBR3 WILD-TYPE"   "CBR3 MUTATED" 
    TCGA-FZ-5920     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-H6-8124 
"CBR3 WILD-TYPE" "CBR3 WILD-TYPE" "CBR3 WILD-TYPE" "CBR3 WILD-TYPE" 
    TCGA-H6-A45N     TCGA-H8-A6C1     TCGA-HZ-7289     TCGA-HZ-7918 
"CBR3 WILD-TYPE" "CBR3 WILD-TYPE" "CBR3 WILD-TYPE" "CBR3 WILD-TYPE" 
    TCGA-HZ-7919     TCGA-HZ-7922     TCGA-HZ-7923     TCGA-HZ-7924 
"CBR3 WILD-TYPE" "CBR3 WILD-TYPE" "CBR3 WILD-TYPE" "CBR3 WILD-TYPE" 
    TCGA-HZ-7925     TCGA-HZ-7926     TCGA-HZ-8001     TCGA-HZ-8002 
"CBR3 WILD-TYPE" "CBR3 WILD-TYPE" "CBR3 WILD-TYPE" "CBR3 WILD-TYPE" 
    TCGA-HZ-8003     TCGA-HZ-8005     TCGA-HZ-8315     TCGA-HZ-8317 
"CBR3 WILD-TYPE" "CBR3 WILD-TYPE" "CBR3 WILD-TYPE" "CBR3 WILD-TYPE" 
    TCGA-HZ-8636     TCGA-HZ-8638     TCGA-HZ-A49G     TCGA-HZ-A49H 
"CBR3 WILD-TYPE" "CBR3 WILD-TYPE" "CBR3 WILD-TYPE" "CBR3 WILD-TYPE" 
    TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-IB-7644     TCGA-IB-7645 
"CBR3 WILD-TYPE" "CBR3 WILD-TYPE" "CBR3 WILD-TYPE" "CBR3 WILD-TYPE" 
    TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7651 
"CBR3 WILD-TYPE" "CBR3 WILD-TYPE" "CBR3 WILD-TYPE" "CBR3 WILD-TYPE" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887 
"CBR3 WILD-TYPE" "CBR3 WILD-TYPE"   "CBR3 MUTATED" "CBR3 WILD-TYPE" 
    TCGA-IB-7888     TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891 
"CBR3 WILD-TYPE" "CBR3 WILD-TYPE"   "CBR3 MUTATED" "CBR3 WILD-TYPE" 
    TCGA-IB-7893     TCGA-IB-7897     TCGA-IB-8126     TCGA-IB-8127 
"CBR3 WILD-TYPE" "CBR3 WILD-TYPE" "CBR3 WILD-TYPE" "CBR3 WILD-TYPE" 
    TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS 
"CBR3 WILD-TYPE" "CBR3 WILD-TYPE" "CBR3 WILD-TYPE" "CBR3 WILD-TYPE" 
    TCGA-IB-A5ST     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
"CBR3 WILD-TYPE" "CBR3 WILD-TYPE" "CBR3 WILD-TYPE" "CBR3 WILD-TYPE" 
    TCGA-PZ-A5RE     TCGA-Q3-A5QY     TCGA-US-A779     TCGA-US-A77E 
"CBR3 WILD-TYPE" "CBR3 WILD-TYPE"   "CBR3 MUTATED" "CBR3 WILD-TYPE" 
    TCGA-US-A77J 
"CBR3 WILD-TYPE" 
[1] "hr=" "1.5"
D82V2, continuous
                vv
clus             STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  CBR3 MUTATED          0        1         1         2         0        0
  CBR3 WILD-TYPE        1        3        10        49         2        3
D82V3, multiclass
                vv
clus             T1+T2 T3+T4
  CBR3 MUTATED       1     3
  CBR3 WILD-TYPE     5    63
D82V4, multiclass
       clus
vv      CBR3 MUTATED CBR3 WILD-TYPE
  T1+T2            1              5
  T3+T4            3             63
D82V5, binary
                cls
clus              0  1
  CBR3 MUTATED    1  2
  CBR3 WILD-TYPE 16 52
[1] "tbl2"
                cls
clus             [,1] [,2]
  CBR3 MUTATED      1    2
  CBR3 WILD-TYPE   16   52
   clus
vv  CBR3 MUTATED CBR3 WILD-TYPE
  0            1             16
  1            2             52
                vv
clus             M0 M1 MX
  CBR3 MUTATED    3  0  1
  CBR3 WILD-TYPE 36  3 29
D82V6, multiclass
    clus
vv   CBR3 MUTATED CBR3 WILD-TYPE
  M0            3             36
  M1            0              3
  MX            1             29
D82V7, binary
                cls
clus              0  1
  CBR3 MUTATED    1  3
  CBR3 WILD-TYPE 35 33
[1] "tbl2"
                cls
clus             [,1] [,2]
  CBR3 MUTATED      1    3
  CBR3 WILD-TYPE   35   33
        clus
vv       CBR3 MUTATED CBR3 WILD-TYPE
  FEMALE            1             35
  MALE              3             33
                vv
clus             PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  CBR3 MUTATED                                     3
  CBR3 WILD-TYPE                                  62
                vv
clus             PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  CBR3 MUTATED                                       0
  CBR3 WILD-TYPE                                     4
                vv
clus             PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  CBR3 MUTATED                                                  1
  CBR3 WILD-TYPE                                                1
D82V8, multiclass
                                                  clus
vv                                                 CBR3 MUTATED CBR3 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                         3             62
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                       0              4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA            1              1
D82V9, continuous
[1] "Remove cluster labels:" "CBR3 MUTATED"          
clus
  CBR3 MUTATED CBR3 WILD-TYPE 
             2             20 
    TCGA-F2-6880     TCGA-FB-A4P5     TCGA-FB-A4P6     TCGA-FB-A5VM 
"CBR3 WILD-TYPE" "CBR3 WILD-TYPE" "CBR3 WILD-TYPE" "CBR3 WILD-TYPE" 
    TCGA-FB-A78T     TCGA-H6-8124     TCGA-H6-A45N     TCGA-H8-A6C1 
"CBR3 WILD-TYPE" "CBR3 WILD-TYPE" "CBR3 WILD-TYPE" "CBR3 WILD-TYPE" 
    TCGA-IB-7644     TCGA-IB-7649     TCGA-IB-7651     TCGA-IB-7885 
"CBR3 WILD-TYPE" "CBR3 WILD-TYPE" "CBR3 WILD-TYPE" "CBR3 WILD-TYPE" 
    TCGA-IB-7887     TCGA-IB-7891     TCGA-IB-8126     TCGA-IB-8127 
"CBR3 WILD-TYPE" "CBR3 WILD-TYPE" "CBR3 WILD-TYPE" "CBR3 WILD-TYPE" 
    TCGA-IB-A5SS     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
"CBR3 WILD-TYPE" "CBR3 WILD-TYPE" "CBR3 WILD-TYPE" "CBR3 WILD-TYPE" 
D82V10, continuous
[1] "Remove cluster labels:" "CBR3 MUTATED"          
clus
  CBR3 MUTATED CBR3 WILD-TYPE 
             2             17 
    TCGA-FB-A4P5     TCGA-FB-A4P6     TCGA-FB-A5VM     TCGA-FB-A78T 
"CBR3 WILD-TYPE" "CBR3 WILD-TYPE" "CBR3 WILD-TYPE" "CBR3 WILD-TYPE" 
    TCGA-H6-8124     TCGA-H8-A6C1     TCGA-IB-7644     TCGA-IB-7649 
"CBR3 WILD-TYPE" "CBR3 WILD-TYPE" "CBR3 WILD-TYPE" "CBR3 WILD-TYPE" 
    TCGA-IB-7651     TCGA-IB-7885     TCGA-IB-7891     TCGA-IB-8126 
"CBR3 WILD-TYPE" "CBR3 WILD-TYPE" "CBR3 WILD-TYPE" "CBR3 WILD-TYPE" 
    TCGA-IB-8127     TCGA-IB-A5SS     TCGA-IB-A6UG     TCGA-LB-A7SX 
"CBR3 WILD-TYPE" "CBR3 WILD-TYPE" "CBR3 WILD-TYPE" "CBR3 WILD-TYPE" 
    TCGA-OE-A75W 
"CBR3 WILD-TYPE" 
                vv
clus             R0 R1 RX
  CBR3 MUTATED    3  1  0
  CBR3 WILD-TYPE 39 23  2
D82V11, multiclass
    clus
vv   CBR3 MUTATED CBR3 WILD-TYPE
  R0            3             39
  R1            1             23
  RX            0              2
D82V12, continuous

Clustering(83) Variable = TOX4 MUTATION ANALYSIS
D83V1, survival
                sevent
clus2             0  1
  TOX4 MUTATED    2  7
  TOX4 WILD-TYPE 38 22
  TOX4 MUTATED TOX4 WILD-TYPE 
             9             60 
  TOX4 MUTATED TOX4 WILD-TYPE 
             7             22 
$`TOX4 MUTATED`
TCGA-H6-A45N TCGA-HZ-8001 TCGA-HZ-8005 TCGA-HZ-A49G TCGA-IB-7646 TCGA-IB-7651 
        7.66         0.62         3.95         0.76         4.77        19.82 
TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A6UG 
        7.20        15.12         1.35 

$`TOX4 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P5 TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR 
        0.13        11.93        12.66         2.47         0.03         5.46 
TCGA-FZ-5920 TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 TCGA-H8-A6C1 TCGA-HZ-7289 
        2.01        36.20        20.81        12.89        13.02         7.89 
TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 
        0.92         0.66         0.13         0.26        12.13        11.87 
TCGA-HZ-7926 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8636 
        0.26         0.79         0.69         0.92         0.53         0.16 
TCGA-HZ-8638 TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7645 
        2.99         0.95         6.38         1.51        11.41        49.38 
TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 
       21.90        15.35        15.65        27.98         4.04         3.62 
TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-7897 
       43.79        15.81        19.66        16.04         3.85        15.98 
TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5ST TCGA-LB-A7SX 
        0.56        17.16        10.82         9.86         0.26         4.18 
TCGA-OE-A75W TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
        3.62         8.12        13.68        16.80        14.14        18.67 

  TOX4 MUTATED TOX4 WILD-TYPE 
          0.62           0.03 
  TOX4 MUTATED TOX4 WILD-TYPE 
         19.82          49.38 
  TOX4 MUTATED TOX4 WILD-TYPE 
          4.77           8.91 
[1] "0.6 - 19.8 (4.8)" "0.0 - 49.4 (8.9)"
    TCGA-F2-6879     TCGA-F2-6880     TCGA-F2-7273     TCGA-F2-7276 
"TOX4 WILD-TYPE" "TOX4 WILD-TYPE" "TOX4 WILD-TYPE" "TOX4 WILD-TYPE" 
    TCGA-F2-A44G     TCGA-F2-A44H     TCGA-FB-A4P5     TCGA-FB-A4P6 
"TOX4 WILD-TYPE" "TOX4 WILD-TYPE" "TOX4 WILD-TYPE" "TOX4 WILD-TYPE" 
    TCGA-FB-A545     TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-FB-A7DR 
"TOX4 WILD-TYPE" "TOX4 WILD-TYPE" "TOX4 WILD-TYPE" "TOX4 WILD-TYPE" 
    TCGA-FZ-5920     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-H6-8124 
"TOX4 WILD-TYPE" "TOX4 WILD-TYPE" "TOX4 WILD-TYPE" "TOX4 WILD-TYPE" 
    TCGA-H6-A45N     TCGA-H8-A6C1     TCGA-HZ-7289     TCGA-HZ-7918 
  "TOX4 MUTATED" "TOX4 WILD-TYPE" "TOX4 WILD-TYPE" "TOX4 WILD-TYPE" 
    TCGA-HZ-7919     TCGA-HZ-7922     TCGA-HZ-7923     TCGA-HZ-7924 
"TOX4 WILD-TYPE" "TOX4 WILD-TYPE" "TOX4 WILD-TYPE" "TOX4 WILD-TYPE" 
    TCGA-HZ-7925     TCGA-HZ-7926     TCGA-HZ-8001     TCGA-HZ-8002 
"TOX4 WILD-TYPE" "TOX4 WILD-TYPE"   "TOX4 MUTATED" "TOX4 WILD-TYPE" 
    TCGA-HZ-8003     TCGA-HZ-8005     TCGA-HZ-8315     TCGA-HZ-8317 
"TOX4 WILD-TYPE"   "TOX4 MUTATED" "TOX4 WILD-TYPE" "TOX4 WILD-TYPE" 
    TCGA-HZ-8636     TCGA-HZ-8638     TCGA-HZ-A49G     TCGA-HZ-A49H 
"TOX4 WILD-TYPE" "TOX4 WILD-TYPE"   "TOX4 MUTATED" "TOX4 WILD-TYPE" 
    TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-IB-7644     TCGA-IB-7645 
"TOX4 WILD-TYPE" "TOX4 WILD-TYPE" "TOX4 WILD-TYPE" "TOX4 WILD-TYPE" 
    TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7651 
  "TOX4 MUTATED" "TOX4 WILD-TYPE" "TOX4 WILD-TYPE"   "TOX4 MUTATED" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887 
"TOX4 WILD-TYPE" "TOX4 WILD-TYPE" "TOX4 WILD-TYPE" "TOX4 WILD-TYPE" 
    TCGA-IB-7888     TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891 
"TOX4 WILD-TYPE" "TOX4 WILD-TYPE" "TOX4 WILD-TYPE" "TOX4 WILD-TYPE" 
    TCGA-IB-7893     TCGA-IB-7897     TCGA-IB-8126     TCGA-IB-8127 
"TOX4 WILD-TYPE" "TOX4 WILD-TYPE" "TOX4 WILD-TYPE" "TOX4 WILD-TYPE" 
    TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS 
"TOX4 WILD-TYPE" "TOX4 WILD-TYPE"   "TOX4 MUTATED"   "TOX4 MUTATED" 
    TCGA-IB-A5ST     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
"TOX4 WILD-TYPE"   "TOX4 MUTATED" "TOX4 WILD-TYPE" "TOX4 WILD-TYPE" 
    TCGA-PZ-A5RE     TCGA-Q3-A5QY     TCGA-US-A779     TCGA-US-A77E 
"TOX4 WILD-TYPE" "TOX4 WILD-TYPE" "TOX4 WILD-TYPE" "TOX4 WILD-TYPE" 
    TCGA-US-A77J 
"TOX4 WILD-TYPE" 
    TCGA-F2-6879     TCGA-F2-6880     TCGA-F2-7273     TCGA-F2-7276 
"TOX4 WILD-TYPE" "TOX4 WILD-TYPE" "TOX4 WILD-TYPE" "TOX4 WILD-TYPE" 
    TCGA-F2-A44G     TCGA-F2-A44H     TCGA-FB-A4P5     TCGA-FB-A4P6 
"TOX4 WILD-TYPE" "TOX4 WILD-TYPE" "TOX4 WILD-TYPE" "TOX4 WILD-TYPE" 
    TCGA-FB-A545     TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-FB-A7DR 
"TOX4 WILD-TYPE" "TOX4 WILD-TYPE" "TOX4 WILD-TYPE" "TOX4 WILD-TYPE" 
    TCGA-FZ-5920     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-H6-8124 
"TOX4 WILD-TYPE" "TOX4 WILD-TYPE" "TOX4 WILD-TYPE" "TOX4 WILD-TYPE" 
    TCGA-H6-A45N     TCGA-H8-A6C1     TCGA-HZ-7289     TCGA-HZ-7918 
  "TOX4 MUTATED" "TOX4 WILD-TYPE" "TOX4 WILD-TYPE" "TOX4 WILD-TYPE" 
    TCGA-HZ-7919     TCGA-HZ-7922     TCGA-HZ-7923     TCGA-HZ-7924 
"TOX4 WILD-TYPE" "TOX4 WILD-TYPE" "TOX4 WILD-TYPE" "TOX4 WILD-TYPE" 
    TCGA-HZ-7925     TCGA-HZ-7926     TCGA-HZ-8001     TCGA-HZ-8002 
"TOX4 WILD-TYPE" "TOX4 WILD-TYPE"   "TOX4 MUTATED" "TOX4 WILD-TYPE" 
    TCGA-HZ-8003     TCGA-HZ-8005     TCGA-HZ-8315     TCGA-HZ-8317 
"TOX4 WILD-TYPE"   "TOX4 MUTATED" "TOX4 WILD-TYPE" "TOX4 WILD-TYPE" 
    TCGA-HZ-8636     TCGA-HZ-8638     TCGA-HZ-A49G     TCGA-HZ-A49H 
"TOX4 WILD-TYPE" "TOX4 WILD-TYPE"   "TOX4 MUTATED" "TOX4 WILD-TYPE" 
    TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-IB-7644     TCGA-IB-7645 
"TOX4 WILD-TYPE" "TOX4 WILD-TYPE" "TOX4 WILD-TYPE" "TOX4 WILD-TYPE" 
    TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7651 
  "TOX4 MUTATED" "TOX4 WILD-TYPE" "TOX4 WILD-TYPE"   "TOX4 MUTATED" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887 
"TOX4 WILD-TYPE" "TOX4 WILD-TYPE" "TOX4 WILD-TYPE" "TOX4 WILD-TYPE" 
    TCGA-IB-7888     TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891 
"TOX4 WILD-TYPE" "TOX4 WILD-TYPE" "TOX4 WILD-TYPE" "TOX4 WILD-TYPE" 
    TCGA-IB-7893     TCGA-IB-7897     TCGA-IB-8126     TCGA-IB-8127 
"TOX4 WILD-TYPE" "TOX4 WILD-TYPE" "TOX4 WILD-TYPE" "TOX4 WILD-TYPE" 
    TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS 
"TOX4 WILD-TYPE" "TOX4 WILD-TYPE"   "TOX4 MUTATED"   "TOX4 MUTATED" 
    TCGA-IB-A5ST     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
"TOX4 WILD-TYPE"   "TOX4 MUTATED" "TOX4 WILD-TYPE" "TOX4 WILD-TYPE" 
    TCGA-PZ-A5RE     TCGA-Q3-A5QY     TCGA-US-A779     TCGA-US-A77E 
"TOX4 WILD-TYPE" "TOX4 WILD-TYPE" "TOX4 WILD-TYPE" "TOX4 WILD-TYPE" 
    TCGA-US-A77J 
"TOX4 WILD-TYPE" 
    TCGA-F2-6879     TCGA-F2-6880     TCGA-F2-7273     TCGA-F2-7276 
"TOX4 WILD-TYPE" "TOX4 WILD-TYPE" "TOX4 WILD-TYPE" "TOX4 WILD-TYPE" 
    TCGA-F2-A44G     TCGA-F2-A44H     TCGA-FB-A4P5     TCGA-FB-A4P6 
"TOX4 WILD-TYPE" "TOX4 WILD-TYPE" "TOX4 WILD-TYPE" "TOX4 WILD-TYPE" 
    TCGA-FB-A545     TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-FB-A7DR 
"TOX4 WILD-TYPE" "TOX4 WILD-TYPE" "TOX4 WILD-TYPE" "TOX4 WILD-TYPE" 
    TCGA-FZ-5920     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-H6-8124 
"TOX4 WILD-TYPE" "TOX4 WILD-TYPE" "TOX4 WILD-TYPE" "TOX4 WILD-TYPE" 
    TCGA-H6-A45N     TCGA-H8-A6C1     TCGA-HZ-7289     TCGA-HZ-7918 
  "TOX4 MUTATED" "TOX4 WILD-TYPE" "TOX4 WILD-TYPE" "TOX4 WILD-TYPE" 
    TCGA-HZ-7919     TCGA-HZ-7922     TCGA-HZ-7923     TCGA-HZ-7924 
"TOX4 WILD-TYPE" "TOX4 WILD-TYPE" "TOX4 WILD-TYPE" "TOX4 WILD-TYPE" 
    TCGA-HZ-7925     TCGA-HZ-7926     TCGA-HZ-8001     TCGA-HZ-8002 
"TOX4 WILD-TYPE" "TOX4 WILD-TYPE"   "TOX4 MUTATED" "TOX4 WILD-TYPE" 
    TCGA-HZ-8003     TCGA-HZ-8005     TCGA-HZ-8315     TCGA-HZ-8317 
"TOX4 WILD-TYPE"   "TOX4 MUTATED" "TOX4 WILD-TYPE" "TOX4 WILD-TYPE" 
    TCGA-HZ-8636     TCGA-HZ-8638     TCGA-HZ-A49G     TCGA-HZ-A49H 
"TOX4 WILD-TYPE" "TOX4 WILD-TYPE"   "TOX4 MUTATED" "TOX4 WILD-TYPE" 
    TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-IB-7644     TCGA-IB-7645 
"TOX4 WILD-TYPE" "TOX4 WILD-TYPE" "TOX4 WILD-TYPE" "TOX4 WILD-TYPE" 
    TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7651 
  "TOX4 MUTATED" "TOX4 WILD-TYPE" "TOX4 WILD-TYPE"   "TOX4 MUTATED" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887 
"TOX4 WILD-TYPE" "TOX4 WILD-TYPE" "TOX4 WILD-TYPE" "TOX4 WILD-TYPE" 
    TCGA-IB-7888     TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891 
"TOX4 WILD-TYPE" "TOX4 WILD-TYPE" "TOX4 WILD-TYPE" "TOX4 WILD-TYPE" 
    TCGA-IB-7893     TCGA-IB-7897     TCGA-IB-8126     TCGA-IB-8127 
"TOX4 WILD-TYPE" "TOX4 WILD-TYPE" "TOX4 WILD-TYPE" "TOX4 WILD-TYPE" 
    TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS 
"TOX4 WILD-TYPE" "TOX4 WILD-TYPE"   "TOX4 MUTATED"   "TOX4 MUTATED" 
    TCGA-IB-A5ST     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
"TOX4 WILD-TYPE"   "TOX4 MUTATED" "TOX4 WILD-TYPE" "TOX4 WILD-TYPE" 
    TCGA-PZ-A5RE     TCGA-Q3-A5QY     TCGA-US-A779     TCGA-US-A77E 
"TOX4 WILD-TYPE" "TOX4 WILD-TYPE" "TOX4 WILD-TYPE" "TOX4 WILD-TYPE" 
    TCGA-US-A77J 
"TOX4 WILD-TYPE" 
[1] "hr=" "3.6"
D83V2, continuous
                vv
clus             STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  TOX4 MUTATED          0        1         0         7         1        0
  TOX4 WILD-TYPE        1        3        11        44         1        3
D83V3, multiclass
                vv
clus             T1+T2 T3+T4
  TOX4 MUTATED       2     7
  TOX4 WILD-TYPE     4    59
D83V4, multiclass
       clus
vv      TOX4 MUTATED TOX4 WILD-TYPE
  T1+T2            2              4
  T3+T4            7             59
D83V5, binary
                cls
clus              0  1
  TOX4 MUTATED    2  7
  TOX4 WILD-TYPE 15 47
[1] "tbl2"
                cls
clus             [,1] [,2]
  TOX4 MUTATED      2    7
  TOX4 WILD-TYPE   15   47
   clus
vv  TOX4 MUTATED TOX4 WILD-TYPE
  0            2             15
  1            7             47
                vv
clus             M0 M1 MX
  TOX4 MUTATED    5  0  4
  TOX4 WILD-TYPE 34  3 26
D83V6, multiclass
    clus
vv   TOX4 MUTATED TOX4 WILD-TYPE
  M0            5             34
  M1            0              3
  MX            4             26
D83V7, binary
                cls
clus              0  1
  TOX4 MUTATED    5  4
  TOX4 WILD-TYPE 31 32
[1] "tbl2"
                cls
clus             [,1] [,2]
  TOX4 MUTATED      5    4
  TOX4 WILD-TYPE   31   32
        clus
vv       TOX4 MUTATED TOX4 WILD-TYPE
  FEMALE            5             31
  MALE              4             32
                vv
clus             PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  TOX4 MUTATED                                     8
  TOX4 WILD-TYPE                                  57
                vv
clus             PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  TOX4 MUTATED                                       1
  TOX4 WILD-TYPE                                     3
                vv
clus             PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  TOX4 MUTATED                                                  0
  TOX4 WILD-TYPE                                                2
D83V8, multiclass
                                                  clus
vv                                                 TOX4 MUTATED TOX4 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                         8             57
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                       1              3
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA            0              2
D83V9, continuous
D83V10, continuous
                vv
clus             R0 R1 RX
  TOX4 MUTATED    4  4  0
  TOX4 WILD-TYPE 38 20  2
D83V11, multiclass
    clus
vv   TOX4 MUTATED TOX4 WILD-TYPE
  R0            4             38
  R1            4             20
  RX            0              2
D83V12, continuous

Clustering(84) Variable = OR10A2 MUTATION ANALYSIS
D84V1, survival
                  sevent
clus2               0  1
  OR10A2 MUTATED    7  5
  OR10A2 WILD-TYPE 33 24
  OR10A2 MUTATED OR10A2 WILD-TYPE 
              12               57 
  OR10A2 MUTATED OR10A2 WILD-TYPE 
               5               24 
$`OR10A2 MUTATED`
TCGA-F2-7276 TCGA-H6-8124 TCGA-HZ-7289 TCGA-HZ-8005 TCGA-HZ-8636 TCGA-HZ-8638 
        7.10        12.89         7.89         3.95         0.16         2.99 
TCGA-HZ-A49G TCGA-IB-7645 TCGA-IB-7649 TCGA-IB-7891 TCGA-IB-7897 TCGA-LB-A7SX 
        0.76        49.38        15.35        16.04        15.98         4.18 

$`OR10A2 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-A44G TCGA-F2-A44H TCGA-FB-A4P5 
       10.98         9.70        11.84         5.03        19.27         0.13 
TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR TCGA-FZ-5920 
       11.93        12.66         2.47         0.03         5.46         2.01 
TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7918 TCGA-HZ-7919 
       36.20        20.81         7.66        13.02         0.92         0.66 
TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8001 
        0.13         0.26        12.13        11.87         0.26         0.62 
TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-A49H TCGA-HZ-A4BH 
        0.79         0.69         0.92         0.53         0.95         6.38 
TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7651 TCGA-IB-7652 
        1.51        11.41         4.77        21.90        19.82        15.65 
TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 
       27.98         4.04         3.62        43.79        15.81        19.66 
TCGA-IB-7893 TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ 
        3.85         0.56        17.16        10.82         9.86         7.20 
TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-OE-A75W TCGA-PZ-A5RE TCGA-Q3-A5QY 
       15.12         0.26         1.35         3.62         8.12        13.68 
TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
       16.80        14.14        18.67 

  OR10A2 MUTATED OR10A2 WILD-TYPE 
            0.16             0.03 
  OR10A2 MUTATED OR10A2 WILD-TYPE 
           49.38            43.79 
  OR10A2 MUTATED OR10A2 WILD-TYPE 
           7.495            7.660 
[1] "0.2 - 49.4 (7.5)" "0.0 - 43.8 (7.7)"
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
"OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE"   "OR10A2 MUTATED" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
"OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE"   "OR10A2 MUTATED" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
"OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE"   "OR10A2 MUTATED" "OR10A2 WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
"OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
"OR10A2 WILD-TYPE"   "OR10A2 MUTATED" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
  "OR10A2 MUTATED"   "OR10A2 MUTATED"   "OR10A2 MUTATED" "OR10A2 WILD-TYPE" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
"OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE"   "OR10A2 MUTATED" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
"OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE"   "OR10A2 MUTATED" "OR10A2 WILD-TYPE" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
"OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
"OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE"   "OR10A2 MUTATED" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
"OR10A2 WILD-TYPE"   "OR10A2 MUTATED" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE"   "OR10A2 MUTATED" "OR10A2 WILD-TYPE" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
"OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" 
      TCGA-US-A77J 
"OR10A2 WILD-TYPE" 
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
"OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE"   "OR10A2 MUTATED" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
"OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE"   "OR10A2 MUTATED" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
"OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE"   "OR10A2 MUTATED" "OR10A2 WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
"OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
"OR10A2 WILD-TYPE"   "OR10A2 MUTATED" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
  "OR10A2 MUTATED"   "OR10A2 MUTATED"   "OR10A2 MUTATED" "OR10A2 WILD-TYPE" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
"OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE"   "OR10A2 MUTATED" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
"OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE"   "OR10A2 MUTATED" "OR10A2 WILD-TYPE" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
"OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
"OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE"   "OR10A2 MUTATED" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
"OR10A2 WILD-TYPE"   "OR10A2 MUTATED" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE"   "OR10A2 MUTATED" "OR10A2 WILD-TYPE" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
"OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" 
      TCGA-US-A77J 
"OR10A2 WILD-TYPE" 
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
"OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE"   "OR10A2 MUTATED" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
"OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE"   "OR10A2 MUTATED" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
"OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE"   "OR10A2 MUTATED" "OR10A2 WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
"OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
"OR10A2 WILD-TYPE"   "OR10A2 MUTATED" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
  "OR10A2 MUTATED"   "OR10A2 MUTATED"   "OR10A2 MUTATED" "OR10A2 WILD-TYPE" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
"OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE"   "OR10A2 MUTATED" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
"OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE"   "OR10A2 MUTATED" "OR10A2 WILD-TYPE" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
"OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
"OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE"   "OR10A2 MUTATED" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
"OR10A2 WILD-TYPE"   "OR10A2 MUTATED" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE"   "OR10A2 MUTATED" "OR10A2 WILD-TYPE" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
"OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" 
      TCGA-US-A77J 
"OR10A2 WILD-TYPE" 
[1] "hr=" "1.5"
D84V2, continuous
                  vv
clus               STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  OR10A2 MUTATED          1        1         0        10         0        1
  OR10A2 WILD-TYPE        0        3        11        41         2        2
D84V3, multiclass
                  vv
clus               T1+T2 T3+T4
  OR10A2 MUTATED       3    10
  OR10A2 WILD-TYPE     3    56
D84V4, multiclass
       clus
vv      OR10A2 MUTATED OR10A2 WILD-TYPE
  T1+T2              3                3
  T3+T4             10               56
D84V5, binary
                  cls
clus                0  1
  OR10A2 MUTATED    3 10
  OR10A2 WILD-TYPE 14 44
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR10A2 MUTATED      3   10
  OR10A2 WILD-TYPE   14   44
   clus
vv  OR10A2 MUTATED OR10A2 WILD-TYPE
  0              3               14
  1             10               44
                  vv
clus               M0 M1 MX
  OR10A2 MUTATED    6  1  6
  OR10A2 WILD-TYPE 33  2 24
D84V6, multiclass
    clus
vv   OR10A2 MUTATED OR10A2 WILD-TYPE
  M0              6               33
  M1              1                2
  MX              6               24
D84V7, binary
                  cls
clus                0  1
  OR10A2 MUTATED    8  5
  OR10A2 WILD-TYPE 28 31
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR10A2 MUTATED      8    5
  OR10A2 WILD-TYPE   28   31
        clus
vv       OR10A2 MUTATED OR10A2 WILD-TYPE
  FEMALE              8               28
  MALE                5               31
                  vv
clus               PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  OR10A2 MUTATED                                    11
  OR10A2 WILD-TYPE                                  54
                  vv
clus               PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  OR10A2 MUTATED                                       1
  OR10A2 WILD-TYPE                                     3
                  vv
clus               PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  OR10A2 MUTATED                                                  1
  OR10A2 WILD-TYPE                                                1
D84V8, multiclass
                                                  clus
vv                                                 OR10A2 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                          11
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                         1
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA              1
                                                  clus
vv                                                 OR10A2 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                            54
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                           3
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                1
D84V9, continuous
D84V10, continuous
                  vv
clus               R0 R1 RX
  OR10A2 MUTATED    7  5  1
  OR10A2 WILD-TYPE 35 19  1
D84V11, multiclass
    clus
vv   OR10A2 MUTATED OR10A2 WILD-TYPE
  R0              7               35
  R1              5               19
  RX              1                1
D84V12, continuous

Clustering(85) Variable = OR10A7 MUTATION ANALYSIS
D85V1, survival
                  sevent
clus2               0  1
  OR10A7 MUTATED   14  9
  OR10A7 WILD-TYPE 26 20
  OR10A7 MUTATED OR10A7 WILD-TYPE 
              23               46 
  OR10A7 MUTATED OR10A7 WILD-TYPE 
               9               20 
$`OR10A7 MUTATED`
TCGA-F2-A44G TCGA-FB-A545 TCGA-FB-A78T TCGA-FZ-5922 TCGA-H6-8124 TCGA-HZ-7289 
        5.03        12.66         0.03        36.20        12.89         7.89 
TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 
        0.66         0.13         0.62         0.79         0.69         3.95 
TCGA-HZ-8317 TCGA-HZ-A49G TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7646 TCGA-IB-7647 
        0.53         0.76         6.38         1.51         4.77        21.90 
TCGA-IB-7887 TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-7897 
        3.62        19.66        16.04         3.85        15.98 

$`OR10A7 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44H TCGA-FB-A4P5 
       10.98         9.70        11.84         7.10        19.27         0.13 
TCGA-FB-A4P6 TCGA-FB-A5VM TCGA-FB-A7DR TCGA-FZ-5920 TCGA-FZ-5923 TCGA-H6-A45N 
       11.93         2.47         5.46         2.01        20.81         7.66 
TCGA-H8-A6C1 TCGA-HZ-7918 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 
       13.02         0.92         0.26        12.13        11.87         0.26 
TCGA-HZ-8315 TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49H TCGA-IB-7644 TCGA-IB-7645 
        0.92         0.16         2.99         0.95        11.41        49.38 
TCGA-IB-7649 TCGA-IB-7651 TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7888 
       15.35        19.82        15.65        27.98         4.04        43.79 
TCGA-IB-7889 TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ 
       15.81         0.56        17.16        10.82         9.86         7.20 
TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W TCGA-PZ-A5RE 
       15.12         0.26         1.35         4.18         3.62         8.12 
TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
       13.68        16.80        14.14        18.67 

  OR10A7 MUTATED OR10A7 WILD-TYPE 
            0.03             0.13 
  OR10A7 MUTATED OR10A7 WILD-TYPE 
           36.20            49.38 
  OR10A7 MUTATED OR10A7 WILD-TYPE 
            3.95            10.34 
[1] "0.0 - 36.2 (4.0)"  "0.1 - 49.4 (10.3)"
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
"OR10A7 WILD-TYPE" "OR10A7 WILD-TYPE" "OR10A7 WILD-TYPE" "OR10A7 WILD-TYPE" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
  "OR10A7 MUTATED" "OR10A7 WILD-TYPE" "OR10A7 WILD-TYPE" "OR10A7 WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
  "OR10A7 MUTATED" "OR10A7 WILD-TYPE"   "OR10A7 MUTATED" "OR10A7 WILD-TYPE" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"OR10A7 WILD-TYPE"   "OR10A7 MUTATED" "OR10A7 WILD-TYPE"   "OR10A7 MUTATED" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
"OR10A7 WILD-TYPE" "OR10A7 WILD-TYPE"   "OR10A7 MUTATED" "OR10A7 WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
  "OR10A7 MUTATED"   "OR10A7 MUTATED" "OR10A7 WILD-TYPE" "OR10A7 WILD-TYPE" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"OR10A7 WILD-TYPE" "OR10A7 WILD-TYPE"   "OR10A7 MUTATED"   "OR10A7 MUTATED" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
  "OR10A7 MUTATED"   "OR10A7 MUTATED" "OR10A7 WILD-TYPE"   "OR10A7 MUTATED" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
"OR10A7 WILD-TYPE" "OR10A7 WILD-TYPE"   "OR10A7 MUTATED" "OR10A7 WILD-TYPE" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
  "OR10A7 MUTATED"   "OR10A7 MUTATED" "OR10A7 WILD-TYPE" "OR10A7 WILD-TYPE" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
  "OR10A7 MUTATED"   "OR10A7 MUTATED" "OR10A7 WILD-TYPE" "OR10A7 WILD-TYPE" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
"OR10A7 WILD-TYPE" "OR10A7 WILD-TYPE" "OR10A7 WILD-TYPE"   "OR10A7 MUTATED" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
"OR10A7 WILD-TYPE" "OR10A7 WILD-TYPE"   "OR10A7 MUTATED"   "OR10A7 MUTATED" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
  "OR10A7 MUTATED"   "OR10A7 MUTATED" "OR10A7 WILD-TYPE" "OR10A7 WILD-TYPE" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"OR10A7 WILD-TYPE" "OR10A7 WILD-TYPE" "OR10A7 WILD-TYPE" "OR10A7 WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"OR10A7 WILD-TYPE" "OR10A7 WILD-TYPE" "OR10A7 WILD-TYPE" "OR10A7 WILD-TYPE" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
"OR10A7 WILD-TYPE" "OR10A7 WILD-TYPE" "OR10A7 WILD-TYPE" "OR10A7 WILD-TYPE" 
      TCGA-US-A77J 
"OR10A7 WILD-TYPE" 
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
"OR10A7 WILD-TYPE" "OR10A7 WILD-TYPE" "OR10A7 WILD-TYPE" "OR10A7 WILD-TYPE" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
  "OR10A7 MUTATED" "OR10A7 WILD-TYPE" "OR10A7 WILD-TYPE" "OR10A7 WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
  "OR10A7 MUTATED" "OR10A7 WILD-TYPE"   "OR10A7 MUTATED" "OR10A7 WILD-TYPE" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"OR10A7 WILD-TYPE"   "OR10A7 MUTATED" "OR10A7 WILD-TYPE"   "OR10A7 MUTATED" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
"OR10A7 WILD-TYPE" "OR10A7 WILD-TYPE"   "OR10A7 MUTATED" "OR10A7 WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
  "OR10A7 MUTATED"   "OR10A7 MUTATED" "OR10A7 WILD-TYPE" "OR10A7 WILD-TYPE" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"OR10A7 WILD-TYPE" "OR10A7 WILD-TYPE"   "OR10A7 MUTATED"   "OR10A7 MUTATED" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
  "OR10A7 MUTATED"   "OR10A7 MUTATED" "OR10A7 WILD-TYPE"   "OR10A7 MUTATED" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
"OR10A7 WILD-TYPE" "OR10A7 WILD-TYPE"   "OR10A7 MUTATED" "OR10A7 WILD-TYPE" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
  "OR10A7 MUTATED"   "OR10A7 MUTATED" "OR10A7 WILD-TYPE" "OR10A7 WILD-TYPE" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
  "OR10A7 MUTATED"   "OR10A7 MUTATED" "OR10A7 WILD-TYPE" "OR10A7 WILD-TYPE" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
"OR10A7 WILD-TYPE" "OR10A7 WILD-TYPE" "OR10A7 WILD-TYPE"   "OR10A7 MUTATED" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
"OR10A7 WILD-TYPE" "OR10A7 WILD-TYPE"   "OR10A7 MUTATED"   "OR10A7 MUTATED" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
  "OR10A7 MUTATED"   "OR10A7 MUTATED" "OR10A7 WILD-TYPE" "OR10A7 WILD-TYPE" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"OR10A7 WILD-TYPE" "OR10A7 WILD-TYPE" "OR10A7 WILD-TYPE" "OR10A7 WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"OR10A7 WILD-TYPE" "OR10A7 WILD-TYPE" "OR10A7 WILD-TYPE" "OR10A7 WILD-TYPE" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
"OR10A7 WILD-TYPE" "OR10A7 WILD-TYPE" "OR10A7 WILD-TYPE" "OR10A7 WILD-TYPE" 
      TCGA-US-A77J 
"OR10A7 WILD-TYPE" 
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
"OR10A7 WILD-TYPE" "OR10A7 WILD-TYPE" "OR10A7 WILD-TYPE" "OR10A7 WILD-TYPE" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
  "OR10A7 MUTATED" "OR10A7 WILD-TYPE" "OR10A7 WILD-TYPE" "OR10A7 WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
  "OR10A7 MUTATED" "OR10A7 WILD-TYPE"   "OR10A7 MUTATED" "OR10A7 WILD-TYPE" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"OR10A7 WILD-TYPE"   "OR10A7 MUTATED" "OR10A7 WILD-TYPE"   "OR10A7 MUTATED" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
"OR10A7 WILD-TYPE" "OR10A7 WILD-TYPE"   "OR10A7 MUTATED" "OR10A7 WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
  "OR10A7 MUTATED"   "OR10A7 MUTATED" "OR10A7 WILD-TYPE" "OR10A7 WILD-TYPE" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"OR10A7 WILD-TYPE" "OR10A7 WILD-TYPE"   "OR10A7 MUTATED"   "OR10A7 MUTATED" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
  "OR10A7 MUTATED"   "OR10A7 MUTATED" "OR10A7 WILD-TYPE"   "OR10A7 MUTATED" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
"OR10A7 WILD-TYPE" "OR10A7 WILD-TYPE"   "OR10A7 MUTATED" "OR10A7 WILD-TYPE" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
  "OR10A7 MUTATED"   "OR10A7 MUTATED" "OR10A7 WILD-TYPE" "OR10A7 WILD-TYPE" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
  "OR10A7 MUTATED"   "OR10A7 MUTATED" "OR10A7 WILD-TYPE" "OR10A7 WILD-TYPE" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
"OR10A7 WILD-TYPE" "OR10A7 WILD-TYPE" "OR10A7 WILD-TYPE"   "OR10A7 MUTATED" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
"OR10A7 WILD-TYPE" "OR10A7 WILD-TYPE"   "OR10A7 MUTATED"   "OR10A7 MUTATED" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
  "OR10A7 MUTATED"   "OR10A7 MUTATED" "OR10A7 WILD-TYPE" "OR10A7 WILD-TYPE" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"OR10A7 WILD-TYPE" "OR10A7 WILD-TYPE" "OR10A7 WILD-TYPE" "OR10A7 WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"OR10A7 WILD-TYPE" "OR10A7 WILD-TYPE" "OR10A7 WILD-TYPE" "OR10A7 WILD-TYPE" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
"OR10A7 WILD-TYPE" "OR10A7 WILD-TYPE" "OR10A7 WILD-TYPE" "OR10A7 WILD-TYPE" 
      TCGA-US-A77J 
"OR10A7 WILD-TYPE" 
[1] "hr=" "1.2"
D85V2, continuous
                  vv
clus               STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  OR10A7 MUTATED          0        2         2        19         1        0
  OR10A7 WILD-TYPE        1        2         9        32         1        3
D85V3, multiclass
                  vv
clus               T1+T2 T3+T4
  OR10A7 MUTATED       3    21
  OR10A7 WILD-TYPE     3    45
D85V4, multiclass
       clus
vv      OR10A7 MUTATED OR10A7 WILD-TYPE
  T1+T2              3                3
  T3+T4             21               45
D85V5, binary
                  cls
clus                0  1
  OR10A7 MUTATED    5 19
  OR10A7 WILD-TYPE 12 35
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR10A7 MUTATED      5   19
  OR10A7 WILD-TYPE   12   35
   clus
vv  OR10A7 MUTATED OR10A7 WILD-TYPE
  0              5               12
  1             19               35
                  vv
clus               M0 M1 MX
  OR10A7 MUTATED   13  0 11
  OR10A7 WILD-TYPE 26  3 19
D85V6, multiclass
    clus
vv   OR10A7 MUTATED OR10A7 WILD-TYPE
  M0             13               26
  M1              0                3
  MX             11               19
D85V7, binary
                  cls
clus                0  1
  OR10A7 MUTATED   12 12
  OR10A7 WILD-TYPE 24 24
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR10A7 MUTATED     12   12
  OR10A7 WILD-TYPE   24   24
        clus
vv       OR10A7 MUTATED OR10A7 WILD-TYPE
  FEMALE             12               24
  MALE               12               24
                  vv
clus               PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  OR10A7 MUTATED                                    22
  OR10A7 WILD-TYPE                                  43
                  vv
clus               PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  OR10A7 MUTATED                                       2
  OR10A7 WILD-TYPE                                     2
                  vv
clus               PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  OR10A7 MUTATED                                                  0
  OR10A7 WILD-TYPE                                                2
D85V8, multiclass
                                                  clus
vv                                                 OR10A7 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                          22
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                         2
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA              0
                                                  clus
vv                                                 OR10A7 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                            43
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                           2
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                2
D85V9, continuous
D85V10, continuous
                  vv
clus               R0 R1 RX
  OR10A7 MUTATED   12 10  1
  OR10A7 WILD-TYPE 30 14  1
D85V11, multiclass
    clus
vv   OR10A7 MUTATED OR10A7 WILD-TYPE
  R0             12               30
  R1             10               14
  RX              1                1
D85V12, continuous

Clustering(86) Variable = FAM63B MUTATION ANALYSIS
D86V1, survival
                  sevent
clus2               0  1
  FAM63B MUTATED    5  4
  FAM63B WILD-TYPE 35 25
  FAM63B MUTATED FAM63B WILD-TYPE 
               9               60 
  FAM63B MUTATED FAM63B WILD-TYPE 
               4               25 
$`FAM63B MUTATED`
TCGA-F2-7276 TCGA-FB-A4P6 TCGA-HZ-7919 TCGA-HZ-7924 TCGA-HZ-8317 TCGA-IB-7646 
        7.10        11.93         0.66        12.13         0.53         4.77 
TCGA-IB-7651 TCGA-IB-A6UG TCGA-PZ-A5RE 
       19.82         1.35         8.12 

$`FAM63B WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-A44G TCGA-F2-A44H TCGA-FB-A4P5 
       10.98         9.70        11.84         5.03        19.27         0.13 
TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR TCGA-FZ-5920 TCGA-FZ-5922 
       12.66         2.47         0.03         5.46         2.01        36.20 
TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7289 TCGA-HZ-7918 
       20.81        12.89         7.66        13.02         7.89         0.92 
TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 
        0.13         0.26        11.87         0.26         0.62         0.79 
TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G 
        0.69         3.95         0.92         0.16         2.99         0.76 
TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7647 
        0.95         6.38         1.51        11.41        49.38        21.90 
TCGA-IB-7649 TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7888 
       15.35        15.65        27.98         4.04         3.62        43.79 
TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-8126 
       15.81        19.66        16.04         3.85        15.98         0.56 
TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST 
       17.16        10.82         9.86         7.20        15.12         0.26 
TCGA-LB-A7SX TCGA-OE-A75W TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
        4.18         3.62        13.68        16.80        14.14        18.67 

  FAM63B MUTATED FAM63B WILD-TYPE 
            0.53             0.03 
  FAM63B MUTATED FAM63B WILD-TYPE 
           19.82            49.38 
  FAM63B MUTATED FAM63B WILD-TYPE 
           7.100            7.775 
[1] "0.5 - 19.8 (7.1)" "0.0 - 49.4 (7.8)"
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
"FAM63B WILD-TYPE" "FAM63B WILD-TYPE" "FAM63B WILD-TYPE"   "FAM63B MUTATED" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"FAM63B WILD-TYPE" "FAM63B WILD-TYPE" "FAM63B WILD-TYPE"   "FAM63B MUTATED" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
"FAM63B WILD-TYPE" "FAM63B WILD-TYPE" "FAM63B WILD-TYPE" "FAM63B WILD-TYPE" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"FAM63B WILD-TYPE" "FAM63B WILD-TYPE" "FAM63B WILD-TYPE" "FAM63B WILD-TYPE" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
"FAM63B WILD-TYPE" "FAM63B WILD-TYPE" "FAM63B WILD-TYPE" "FAM63B WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
  "FAM63B MUTATED" "FAM63B WILD-TYPE" "FAM63B WILD-TYPE"   "FAM63B MUTATED" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"FAM63B WILD-TYPE" "FAM63B WILD-TYPE" "FAM63B WILD-TYPE" "FAM63B WILD-TYPE" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
"FAM63B WILD-TYPE" "FAM63B WILD-TYPE" "FAM63B WILD-TYPE"   "FAM63B MUTATED" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
"FAM63B WILD-TYPE" "FAM63B WILD-TYPE" "FAM63B WILD-TYPE" "FAM63B WILD-TYPE" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
"FAM63B WILD-TYPE" "FAM63B WILD-TYPE" "FAM63B WILD-TYPE" "FAM63B WILD-TYPE" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
  "FAM63B MUTATED" "FAM63B WILD-TYPE" "FAM63B WILD-TYPE"   "FAM63B MUTATED" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
"FAM63B WILD-TYPE" "FAM63B WILD-TYPE" "FAM63B WILD-TYPE" "FAM63B WILD-TYPE" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
"FAM63B WILD-TYPE" "FAM63B WILD-TYPE" "FAM63B WILD-TYPE" "FAM63B WILD-TYPE" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
"FAM63B WILD-TYPE" "FAM63B WILD-TYPE" "FAM63B WILD-TYPE" "FAM63B WILD-TYPE" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"FAM63B WILD-TYPE" "FAM63B WILD-TYPE" "FAM63B WILD-TYPE" "FAM63B WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"FAM63B WILD-TYPE"   "FAM63B MUTATED" "FAM63B WILD-TYPE" "FAM63B WILD-TYPE" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
  "FAM63B MUTATED" "FAM63B WILD-TYPE" "FAM63B WILD-TYPE" "FAM63B WILD-TYPE" 
      TCGA-US-A77J 
"FAM63B WILD-TYPE" 
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
"FAM63B WILD-TYPE" "FAM63B WILD-TYPE" "FAM63B WILD-TYPE"   "FAM63B MUTATED" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"FAM63B WILD-TYPE" "FAM63B WILD-TYPE" "FAM63B WILD-TYPE"   "FAM63B MUTATED" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
"FAM63B WILD-TYPE" "FAM63B WILD-TYPE" "FAM63B WILD-TYPE" "FAM63B WILD-TYPE" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"FAM63B WILD-TYPE" "FAM63B WILD-TYPE" "FAM63B WILD-TYPE" "FAM63B WILD-TYPE" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
"FAM63B WILD-TYPE" "FAM63B WILD-TYPE" "FAM63B WILD-TYPE" "FAM63B WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
  "FAM63B MUTATED" "FAM63B WILD-TYPE" "FAM63B WILD-TYPE"   "FAM63B MUTATED" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"FAM63B WILD-TYPE" "FAM63B WILD-TYPE" "FAM63B WILD-TYPE" "FAM63B WILD-TYPE" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
"FAM63B WILD-TYPE" "FAM63B WILD-TYPE" "FAM63B WILD-TYPE"   "FAM63B MUTATED" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
"FAM63B WILD-TYPE" "FAM63B WILD-TYPE" "FAM63B WILD-TYPE" "FAM63B WILD-TYPE" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
"FAM63B WILD-TYPE" "FAM63B WILD-TYPE" "FAM63B WILD-TYPE" "FAM63B WILD-TYPE" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
  "FAM63B MUTATED" "FAM63B WILD-TYPE" "FAM63B WILD-TYPE"   "FAM63B MUTATED" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
"FAM63B WILD-TYPE" "FAM63B WILD-TYPE" "FAM63B WILD-TYPE" "FAM63B WILD-TYPE" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
"FAM63B WILD-TYPE" "FAM63B WILD-TYPE" "FAM63B WILD-TYPE" "FAM63B WILD-TYPE" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
"FAM63B WILD-TYPE" "FAM63B WILD-TYPE" "FAM63B WILD-TYPE" "FAM63B WILD-TYPE" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"FAM63B WILD-TYPE" "FAM63B WILD-TYPE" "FAM63B WILD-TYPE" "FAM63B WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"FAM63B WILD-TYPE"   "FAM63B MUTATED" "FAM63B WILD-TYPE" "FAM63B WILD-TYPE" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
  "FAM63B MUTATED" "FAM63B WILD-TYPE" "FAM63B WILD-TYPE" "FAM63B WILD-TYPE" 
      TCGA-US-A77J 
"FAM63B WILD-TYPE" 
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
"FAM63B WILD-TYPE" "FAM63B WILD-TYPE" "FAM63B WILD-TYPE"   "FAM63B MUTATED" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"FAM63B WILD-TYPE" "FAM63B WILD-TYPE" "FAM63B WILD-TYPE"   "FAM63B MUTATED" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
"FAM63B WILD-TYPE" "FAM63B WILD-TYPE" "FAM63B WILD-TYPE" "FAM63B WILD-TYPE" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"FAM63B WILD-TYPE" "FAM63B WILD-TYPE" "FAM63B WILD-TYPE" "FAM63B WILD-TYPE" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
"FAM63B WILD-TYPE" "FAM63B WILD-TYPE" "FAM63B WILD-TYPE" "FAM63B WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
  "FAM63B MUTATED" "FAM63B WILD-TYPE" "FAM63B WILD-TYPE"   "FAM63B MUTATED" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"FAM63B WILD-TYPE" "FAM63B WILD-TYPE" "FAM63B WILD-TYPE" "FAM63B WILD-TYPE" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
"FAM63B WILD-TYPE" "FAM63B WILD-TYPE" "FAM63B WILD-TYPE"   "FAM63B MUTATED" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
"FAM63B WILD-TYPE" "FAM63B WILD-TYPE" "FAM63B WILD-TYPE" "FAM63B WILD-TYPE" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
"FAM63B WILD-TYPE" "FAM63B WILD-TYPE" "FAM63B WILD-TYPE" "FAM63B WILD-TYPE" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
  "FAM63B MUTATED" "FAM63B WILD-TYPE" "FAM63B WILD-TYPE"   "FAM63B MUTATED" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
"FAM63B WILD-TYPE" "FAM63B WILD-TYPE" "FAM63B WILD-TYPE" "FAM63B WILD-TYPE" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
"FAM63B WILD-TYPE" "FAM63B WILD-TYPE" "FAM63B WILD-TYPE" "FAM63B WILD-TYPE" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
"FAM63B WILD-TYPE" "FAM63B WILD-TYPE" "FAM63B WILD-TYPE" "FAM63B WILD-TYPE" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"FAM63B WILD-TYPE" "FAM63B WILD-TYPE" "FAM63B WILD-TYPE" "FAM63B WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"FAM63B WILD-TYPE"   "FAM63B MUTATED" "FAM63B WILD-TYPE" "FAM63B WILD-TYPE" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
  "FAM63B MUTATED" "FAM63B WILD-TYPE" "FAM63B WILD-TYPE" "FAM63B WILD-TYPE" 
      TCGA-US-A77J 
"FAM63B WILD-TYPE" 
[1] "hr=" "1.6"
D86V2, continuous
                  vv
clus               STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  FAM63B MUTATED          0        0         1         9         0        0
  FAM63B WILD-TYPE        1        4        10        42         2        3
D86V3, multiclass
                  vv
clus               T1+T2 T3+T4
  FAM63B MUTATED       0    10
  FAM63B WILD-TYPE     6    56
D86V4, multiclass
       clus
vv      FAM63B MUTATED FAM63B WILD-TYPE
  T1+T2              0                6
  T3+T4             10               56
D86V5, binary
                  cls
clus                0  1
  FAM63B MUTATED    1  9
  FAM63B WILD-TYPE 16 45
[1] "tbl2"
                  cls
clus               [,1] [,2]
  FAM63B MUTATED      1    9
  FAM63B WILD-TYPE   16   45
   clus
vv  FAM63B MUTATED FAM63B WILD-TYPE
  0              1               16
  1              9               45
                  vv
clus               M0 M1 MX
  FAM63B MUTATED    5  0  5
  FAM63B WILD-TYPE 34  3 25
D86V6, multiclass
    clus
vv   FAM63B MUTATED FAM63B WILD-TYPE
  M0              5               34
  M1              0                3
  MX              5               25
D86V7, binary
                  cls
clus                0  1
  FAM63B MUTATED    6  4
  FAM63B WILD-TYPE 30 32
[1] "tbl2"
                  cls
clus               [,1] [,2]
  FAM63B MUTATED      6    4
  FAM63B WILD-TYPE   30   32
        clus
vv       FAM63B MUTATED FAM63B WILD-TYPE
  FEMALE              6               30
  MALE                4               32
                  vv
clus               PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  FAM63B MUTATED                                    10
  FAM63B WILD-TYPE                                  55
                  vv
clus               PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  FAM63B MUTATED                                       0
  FAM63B WILD-TYPE                                     4
                  vv
clus               PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  FAM63B MUTATED                                                  0
  FAM63B WILD-TYPE                                                2
D86V8, multiclass
                                                  clus
vv                                                 FAM63B MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                          10
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                         0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA              0
                                                  clus
vv                                                 FAM63B WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                            55
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                           4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                2
D86V9, continuous
D86V10, continuous
                  vv
clus               R0 R1 RX
  FAM63B MUTATED    4  4  0
  FAM63B WILD-TYPE 38 20  2
D86V11, multiclass
    clus
vv   FAM63B MUTATED FAM63B WILD-TYPE
  R0              4               38
  R1              4               20
  RX              0                2
D86V12, continuous

Clustering(87) Variable = RNF168 MUTATION ANALYSIS
D87V1, survival
                  sevent
clus2               0  1
  RNF168 MUTATED    1  4
  RNF168 WILD-TYPE 39 25
  RNF168 MUTATED RNF168 WILD-TYPE 
               5               64 
  RNF168 MUTATED RNF168 WILD-TYPE 
               4               25 
$`RNF168 MUTATED`
TCGA-F2-A44H TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7651 TCGA-IB-7887 
       19.27        21.90        15.35        19.82         3.62 

$`RNF168 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-FB-A4P5 
       10.98         9.70        11.84         7.10         5.03         0.13 
TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR TCGA-FZ-5920 
       11.93        12.66         2.47         0.03         5.46         2.01 
TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7289 
       36.20        20.81        12.89         7.66        13.02         7.89 
TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 
        0.92         0.66         0.13         0.26        12.13        11.87 
TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 
        0.26         0.62         0.79         0.69         3.95         0.92 
TCGA-HZ-8317 TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH 
        0.53         0.16         2.99         0.76         0.95         6.38 
TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7652 TCGA-IB-7885 
        1.51        11.41        49.38         4.77        15.65        27.98 
TCGA-IB-7886 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-7893 
        4.04        43.79        15.81        19.66        16.04         3.85 
TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ 
       15.98         0.56        17.16        10.82         9.86         7.20 
TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W TCGA-PZ-A5RE 
       15.12         0.26         1.35         4.18         3.62         8.12 
TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
       13.68        16.80        14.14        18.67 

  RNF168 MUTATED RNF168 WILD-TYPE 
            3.62             0.03 
  RNF168 MUTATED RNF168 WILD-TYPE 
           21.90            49.38 
  RNF168 MUTATED RNF168 WILD-TYPE 
           19.27             7.15 
[1] "3.6 - 21.9 (19.3)" "0.0 - 49.4 (7.2)" 
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
"RNF168 WILD-TYPE" "RNF168 WILD-TYPE" "RNF168 WILD-TYPE" "RNF168 WILD-TYPE" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"RNF168 WILD-TYPE"   "RNF168 MUTATED" "RNF168 WILD-TYPE" "RNF168 WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
"RNF168 WILD-TYPE" "RNF168 WILD-TYPE" "RNF168 WILD-TYPE" "RNF168 WILD-TYPE" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"RNF168 WILD-TYPE" "RNF168 WILD-TYPE" "RNF168 WILD-TYPE" "RNF168 WILD-TYPE" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
"RNF168 WILD-TYPE" "RNF168 WILD-TYPE" "RNF168 WILD-TYPE" "RNF168 WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
"RNF168 WILD-TYPE" "RNF168 WILD-TYPE" "RNF168 WILD-TYPE" "RNF168 WILD-TYPE" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"RNF168 WILD-TYPE" "RNF168 WILD-TYPE" "RNF168 WILD-TYPE" "RNF168 WILD-TYPE" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
"RNF168 WILD-TYPE" "RNF168 WILD-TYPE" "RNF168 WILD-TYPE" "RNF168 WILD-TYPE" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
"RNF168 WILD-TYPE" "RNF168 WILD-TYPE" "RNF168 WILD-TYPE" "RNF168 WILD-TYPE" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
"RNF168 WILD-TYPE" "RNF168 WILD-TYPE" "RNF168 WILD-TYPE" "RNF168 WILD-TYPE" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
"RNF168 WILD-TYPE"   "RNF168 MUTATED"   "RNF168 MUTATED"   "RNF168 MUTATED" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
"RNF168 WILD-TYPE" "RNF168 WILD-TYPE" "RNF168 WILD-TYPE"   "RNF168 MUTATED" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
"RNF168 WILD-TYPE" "RNF168 WILD-TYPE" "RNF168 WILD-TYPE" "RNF168 WILD-TYPE" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
"RNF168 WILD-TYPE" "RNF168 WILD-TYPE" "RNF168 WILD-TYPE" "RNF168 WILD-TYPE" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"RNF168 WILD-TYPE" "RNF168 WILD-TYPE" "RNF168 WILD-TYPE" "RNF168 WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"RNF168 WILD-TYPE" "RNF168 WILD-TYPE" "RNF168 WILD-TYPE" "RNF168 WILD-TYPE" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
"RNF168 WILD-TYPE" "RNF168 WILD-TYPE" "RNF168 WILD-TYPE" "RNF168 WILD-TYPE" 
      TCGA-US-A77J 
"RNF168 WILD-TYPE" 
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
"RNF168 WILD-TYPE" "RNF168 WILD-TYPE" "RNF168 WILD-TYPE" "RNF168 WILD-TYPE" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"RNF168 WILD-TYPE"   "RNF168 MUTATED" "RNF168 WILD-TYPE" "RNF168 WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
"RNF168 WILD-TYPE" "RNF168 WILD-TYPE" "RNF168 WILD-TYPE" "RNF168 WILD-TYPE" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"RNF168 WILD-TYPE" "RNF168 WILD-TYPE" "RNF168 WILD-TYPE" "RNF168 WILD-TYPE" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
"RNF168 WILD-TYPE" "RNF168 WILD-TYPE" "RNF168 WILD-TYPE" "RNF168 WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
"RNF168 WILD-TYPE" "RNF168 WILD-TYPE" "RNF168 WILD-TYPE" "RNF168 WILD-TYPE" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"RNF168 WILD-TYPE" "RNF168 WILD-TYPE" "RNF168 WILD-TYPE" "RNF168 WILD-TYPE" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
"RNF168 WILD-TYPE" "RNF168 WILD-TYPE" "RNF168 WILD-TYPE" "RNF168 WILD-TYPE" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
"RNF168 WILD-TYPE" "RNF168 WILD-TYPE" "RNF168 WILD-TYPE" "RNF168 WILD-TYPE" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
"RNF168 WILD-TYPE" "RNF168 WILD-TYPE" "RNF168 WILD-TYPE" "RNF168 WILD-TYPE" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
"RNF168 WILD-TYPE"   "RNF168 MUTATED"   "RNF168 MUTATED"   "RNF168 MUTATED" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
"RNF168 WILD-TYPE" "RNF168 WILD-TYPE" "RNF168 WILD-TYPE"   "RNF168 MUTATED" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
"RNF168 WILD-TYPE" "RNF168 WILD-TYPE" "RNF168 WILD-TYPE" "RNF168 WILD-TYPE" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
"RNF168 WILD-TYPE" "RNF168 WILD-TYPE" "RNF168 WILD-TYPE" "RNF168 WILD-TYPE" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"RNF168 WILD-TYPE" "RNF168 WILD-TYPE" "RNF168 WILD-TYPE" "RNF168 WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"RNF168 WILD-TYPE" "RNF168 WILD-TYPE" "RNF168 WILD-TYPE" "RNF168 WILD-TYPE" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
"RNF168 WILD-TYPE" "RNF168 WILD-TYPE" "RNF168 WILD-TYPE" "RNF168 WILD-TYPE" 
      TCGA-US-A77J 
"RNF168 WILD-TYPE" 
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
"RNF168 WILD-TYPE" "RNF168 WILD-TYPE" "RNF168 WILD-TYPE" "RNF168 WILD-TYPE" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"RNF168 WILD-TYPE"   "RNF168 MUTATED" "RNF168 WILD-TYPE" "RNF168 WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
"RNF168 WILD-TYPE" "RNF168 WILD-TYPE" "RNF168 WILD-TYPE" "RNF168 WILD-TYPE" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"RNF168 WILD-TYPE" "RNF168 WILD-TYPE" "RNF168 WILD-TYPE" "RNF168 WILD-TYPE" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
"RNF168 WILD-TYPE" "RNF168 WILD-TYPE" "RNF168 WILD-TYPE" "RNF168 WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
"RNF168 WILD-TYPE" "RNF168 WILD-TYPE" "RNF168 WILD-TYPE" "RNF168 WILD-TYPE" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"RNF168 WILD-TYPE" "RNF168 WILD-TYPE" "RNF168 WILD-TYPE" "RNF168 WILD-TYPE" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
"RNF168 WILD-TYPE" "RNF168 WILD-TYPE" "RNF168 WILD-TYPE" "RNF168 WILD-TYPE" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
"RNF168 WILD-TYPE" "RNF168 WILD-TYPE" "RNF168 WILD-TYPE" "RNF168 WILD-TYPE" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
"RNF168 WILD-TYPE" "RNF168 WILD-TYPE" "RNF168 WILD-TYPE" "RNF168 WILD-TYPE" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
"RNF168 WILD-TYPE"   "RNF168 MUTATED"   "RNF168 MUTATED"   "RNF168 MUTATED" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
"RNF168 WILD-TYPE" "RNF168 WILD-TYPE" "RNF168 WILD-TYPE"   "RNF168 MUTATED" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
"RNF168 WILD-TYPE" "RNF168 WILD-TYPE" "RNF168 WILD-TYPE" "RNF168 WILD-TYPE" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
"RNF168 WILD-TYPE" "RNF168 WILD-TYPE" "RNF168 WILD-TYPE" "RNF168 WILD-TYPE" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"RNF168 WILD-TYPE" "RNF168 WILD-TYPE" "RNF168 WILD-TYPE" "RNF168 WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"RNF168 WILD-TYPE" "RNF168 WILD-TYPE" "RNF168 WILD-TYPE" "RNF168 WILD-TYPE" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
"RNF168 WILD-TYPE" "RNF168 WILD-TYPE" "RNF168 WILD-TYPE" "RNF168 WILD-TYPE" 
      TCGA-US-A77J 
"RNF168 WILD-TYPE" 
[1] "hr=" "1"  
D87V2, continuous
                  vv
clus               STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  RNF168 MUTATED          0        0         1         5         0        0
  RNF168 WILD-TYPE        1        4        10        46         2        3
D87V3, multiclass
                  vv
clus               T1+T2 T3+T4
  RNF168 MUTATED       0     6
  RNF168 WILD-TYPE     6    60
D87V4, multiclass
       clus
vv      RNF168 MUTATED RNF168 WILD-TYPE
  T1+T2              0                6
  T3+T4              6               60
D87V5, binary
                  cls
clus                0  1
  RNF168 MUTATED    1  5
  RNF168 WILD-TYPE 16 49
[1] "tbl2"
                  cls
clus               [,1] [,2]
  RNF168 MUTATED      1    5
  RNF168 WILD-TYPE   16   49
   clus
vv  RNF168 MUTATED RNF168 WILD-TYPE
  0              1               16
  1              5               49
                  vv
clus               M0 M1 MX
  RNF168 MUTATED    5  0  1
  RNF168 WILD-TYPE 34  3 29
D87V6, multiclass
    clus
vv   RNF168 MUTATED RNF168 WILD-TYPE
  M0              5               34
  M1              0                3
  MX              1               29
D87V7, binary
                  cls
clus                0  1
  RNF168 MUTATED    4  2
  RNF168 WILD-TYPE 32 34
[1] "tbl2"
                  cls
clus               [,1] [,2]
  RNF168 MUTATED      4    2
  RNF168 WILD-TYPE   32   34
        clus
vv       RNF168 MUTATED RNF168 WILD-TYPE
  FEMALE              4               32
  MALE                2               34
                  vv
clus               PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  RNF168 MUTATED                                     6
  RNF168 WILD-TYPE                                  59
                  vv
clus               PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  RNF168 MUTATED                                       0
  RNF168 WILD-TYPE                                     4
                  vv
clus               PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  RNF168 MUTATED                                                  0
  RNF168 WILD-TYPE                                                2
D87V8, multiclass
                                                  clus
vv                                                 RNF168 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                           6
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                         0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA              0
                                                  clus
vv                                                 RNF168 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                            59
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                           4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                2
D87V9, continuous
D87V10, continuous
[1] "Remove cluster labels:" "RNF168 MUTATED"        
clus
  RNF168 MUTATED RNF168 WILD-TYPE 
               2               17 
      TCGA-FB-A4P5       TCGA-FB-A4P6       TCGA-FB-A5VM       TCGA-FB-A78T 
"RNF168 WILD-TYPE" "RNF168 WILD-TYPE" "RNF168 WILD-TYPE" "RNF168 WILD-TYPE" 
      TCGA-FB-A7DR       TCGA-H6-8124       TCGA-H8-A6C1       TCGA-IB-7644 
"RNF168 WILD-TYPE" "RNF168 WILD-TYPE" "RNF168 WILD-TYPE" "RNF168 WILD-TYPE" 
      TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7891       TCGA-IB-8126 
"RNF168 WILD-TYPE" "RNF168 WILD-TYPE" "RNF168 WILD-TYPE" "RNF168 WILD-TYPE" 
      TCGA-IB-8127       TCGA-IB-A5SS       TCGA-IB-A6UG       TCGA-LB-A7SX 
"RNF168 WILD-TYPE" "RNF168 WILD-TYPE" "RNF168 WILD-TYPE" "RNF168 WILD-TYPE" 
      TCGA-OE-A75W 
"RNF168 WILD-TYPE" 
                  vv
clus               R0 R1 RX
  RNF168 MUTATED    2  4  0
  RNF168 WILD-TYPE 40 20  2
D87V11, multiclass
    clus
vv   RNF168 MUTATED RNF168 WILD-TYPE
  R0              2               40
  R1              4               20
  RX              0                2
D87V12, continuous

Clustering(88) Variable = POP5 MUTATION ANALYSIS
D88V1, survival
                sevent
clus2             0  1
  POP5 MUTATED    9  0
  POP5 WILD-TYPE 31 29
  POP5 MUTATED POP5 WILD-TYPE 
             9             60 
  POP5 MUTATED POP5 WILD-TYPE 
             0             29 
$`POP5 MUTATED`
TCGA-H6-8124 TCGA-HZ-7922 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-A4BK 
       12.89         0.13         0.62         0.79         0.69         1.51 
TCGA-IB-7891 TCGA-IB-8126 TCGA-IB-A5SP 
       16.04         0.56         9.86 

$`POP5 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P5 TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR 
        0.13        11.93        12.66         2.47         0.03         5.46 
TCGA-FZ-5920 TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7289 
        2.01        36.20        20.81         7.66        13.02         7.89 
TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 
        0.92         0.66         0.26        12.13        11.87         0.26 
TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G 
        3.95         0.92         0.53         0.16         2.99         0.76 
TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 
        0.95         6.38        11.41        49.38         4.77        21.90 
TCGA-IB-7649 TCGA-IB-7651 TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 
       15.35        19.82        15.65        27.98         4.04         3.62 
TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-8127 
       43.79        15.81        19.66         3.85        15.98        17.16 
TCGA-IB-A5SO TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX 
       10.82         7.20        15.12         0.26         1.35         4.18 
TCGA-OE-A75W TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
        3.62         8.12        13.68        16.80        14.14        18.67 

  POP5 MUTATED POP5 WILD-TYPE 
          0.13           0.03 
  POP5 MUTATED POP5 WILD-TYPE 
         16.04          49.38 
  POP5 MUTATED POP5 WILD-TYPE 
         0.790          8.005 
[1] "0.1 - 16.0 (0.8)" "0.0 - 49.4 (8.0)"
    TCGA-F2-6879     TCGA-F2-6880     TCGA-F2-7273     TCGA-F2-7276 
"POP5 WILD-TYPE" "POP5 WILD-TYPE" "POP5 WILD-TYPE" "POP5 WILD-TYPE" 
    TCGA-F2-A44G     TCGA-F2-A44H     TCGA-FB-A4P5     TCGA-FB-A4P6 
"POP5 WILD-TYPE" "POP5 WILD-TYPE" "POP5 WILD-TYPE" "POP5 WILD-TYPE" 
    TCGA-FB-A545     TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-FB-A7DR 
"POP5 WILD-TYPE" "POP5 WILD-TYPE" "POP5 WILD-TYPE" "POP5 WILD-TYPE" 
    TCGA-FZ-5920     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-H6-8124 
"POP5 WILD-TYPE" "POP5 WILD-TYPE" "POP5 WILD-TYPE"   "POP5 MUTATED" 
    TCGA-H6-A45N     TCGA-H8-A6C1     TCGA-HZ-7289     TCGA-HZ-7918 
"POP5 WILD-TYPE" "POP5 WILD-TYPE" "POP5 WILD-TYPE" "POP5 WILD-TYPE" 
    TCGA-HZ-7919     TCGA-HZ-7922     TCGA-HZ-7923     TCGA-HZ-7924 
"POP5 WILD-TYPE"   "POP5 MUTATED" "POP5 WILD-TYPE" "POP5 WILD-TYPE" 
    TCGA-HZ-7925     TCGA-HZ-7926     TCGA-HZ-8001     TCGA-HZ-8002 
"POP5 WILD-TYPE" "POP5 WILD-TYPE"   "POP5 MUTATED"   "POP5 MUTATED" 
    TCGA-HZ-8003     TCGA-HZ-8005     TCGA-HZ-8315     TCGA-HZ-8317 
  "POP5 MUTATED" "POP5 WILD-TYPE" "POP5 WILD-TYPE" "POP5 WILD-TYPE" 
    TCGA-HZ-8636     TCGA-HZ-8638     TCGA-HZ-A49G     TCGA-HZ-A49H 
"POP5 WILD-TYPE" "POP5 WILD-TYPE" "POP5 WILD-TYPE" "POP5 WILD-TYPE" 
    TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-IB-7644     TCGA-IB-7645 
"POP5 WILD-TYPE"   "POP5 MUTATED" "POP5 WILD-TYPE" "POP5 WILD-TYPE" 
    TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7651 
"POP5 WILD-TYPE" "POP5 WILD-TYPE" "POP5 WILD-TYPE" "POP5 WILD-TYPE" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887 
"POP5 WILD-TYPE" "POP5 WILD-TYPE" "POP5 WILD-TYPE" "POP5 WILD-TYPE" 
    TCGA-IB-7888     TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891 
"POP5 WILD-TYPE" "POP5 WILD-TYPE" "POP5 WILD-TYPE"   "POP5 MUTATED" 
    TCGA-IB-7893     TCGA-IB-7897     TCGA-IB-8126     TCGA-IB-8127 
"POP5 WILD-TYPE" "POP5 WILD-TYPE"   "POP5 MUTATED" "POP5 WILD-TYPE" 
    TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS 
"POP5 WILD-TYPE"   "POP5 MUTATED" "POP5 WILD-TYPE" "POP5 WILD-TYPE" 
    TCGA-IB-A5ST     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
"POP5 WILD-TYPE" "POP5 WILD-TYPE" "POP5 WILD-TYPE" "POP5 WILD-TYPE" 
    TCGA-PZ-A5RE     TCGA-Q3-A5QY     TCGA-US-A779     TCGA-US-A77E 
"POP5 WILD-TYPE" "POP5 WILD-TYPE" "POP5 WILD-TYPE" "POP5 WILD-TYPE" 
    TCGA-US-A77J 
"POP5 WILD-TYPE" 
    TCGA-F2-6879     TCGA-F2-6880     TCGA-F2-7273     TCGA-F2-7276 
"POP5 WILD-TYPE" "POP5 WILD-TYPE" "POP5 WILD-TYPE" "POP5 WILD-TYPE" 
    TCGA-F2-A44G     TCGA-F2-A44H     TCGA-FB-A4P5     TCGA-FB-A4P6 
"POP5 WILD-TYPE" "POP5 WILD-TYPE" "POP5 WILD-TYPE" "POP5 WILD-TYPE" 
    TCGA-FB-A545     TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-FB-A7DR 
"POP5 WILD-TYPE" "POP5 WILD-TYPE" "POP5 WILD-TYPE" "POP5 WILD-TYPE" 
    TCGA-FZ-5920     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-H6-8124 
"POP5 WILD-TYPE" "POP5 WILD-TYPE" "POP5 WILD-TYPE"   "POP5 MUTATED" 
    TCGA-H6-A45N     TCGA-H8-A6C1     TCGA-HZ-7289     TCGA-HZ-7918 
"POP5 WILD-TYPE" "POP5 WILD-TYPE" "POP5 WILD-TYPE" "POP5 WILD-TYPE" 
    TCGA-HZ-7919     TCGA-HZ-7922     TCGA-HZ-7923     TCGA-HZ-7924 
"POP5 WILD-TYPE"   "POP5 MUTATED" "POP5 WILD-TYPE" "POP5 WILD-TYPE" 
    TCGA-HZ-7925     TCGA-HZ-7926     TCGA-HZ-8001     TCGA-HZ-8002 
"POP5 WILD-TYPE" "POP5 WILD-TYPE"   "POP5 MUTATED"   "POP5 MUTATED" 
    TCGA-HZ-8003     TCGA-HZ-8005     TCGA-HZ-8315     TCGA-HZ-8317 
  "POP5 MUTATED" "POP5 WILD-TYPE" "POP5 WILD-TYPE" "POP5 WILD-TYPE" 
    TCGA-HZ-8636     TCGA-HZ-8638     TCGA-HZ-A49G     TCGA-HZ-A49H 
"POP5 WILD-TYPE" "POP5 WILD-TYPE" "POP5 WILD-TYPE" "POP5 WILD-TYPE" 
    TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-IB-7644     TCGA-IB-7645 
"POP5 WILD-TYPE"   "POP5 MUTATED" "POP5 WILD-TYPE" "POP5 WILD-TYPE" 
    TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7651 
"POP5 WILD-TYPE" "POP5 WILD-TYPE" "POP5 WILD-TYPE" "POP5 WILD-TYPE" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887 
"POP5 WILD-TYPE" "POP5 WILD-TYPE" "POP5 WILD-TYPE" "POP5 WILD-TYPE" 
    TCGA-IB-7888     TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891 
"POP5 WILD-TYPE" "POP5 WILD-TYPE" "POP5 WILD-TYPE"   "POP5 MUTATED" 
    TCGA-IB-7893     TCGA-IB-7897     TCGA-IB-8126     TCGA-IB-8127 
"POP5 WILD-TYPE" "POP5 WILD-TYPE"   "POP5 MUTATED" "POP5 WILD-TYPE" 
    TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS 
"POP5 WILD-TYPE"   "POP5 MUTATED" "POP5 WILD-TYPE" "POP5 WILD-TYPE" 
    TCGA-IB-A5ST     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
"POP5 WILD-TYPE" "POP5 WILD-TYPE" "POP5 WILD-TYPE" "POP5 WILD-TYPE" 
    TCGA-PZ-A5RE     TCGA-Q3-A5QY     TCGA-US-A779     TCGA-US-A77E 
"POP5 WILD-TYPE" "POP5 WILD-TYPE" "POP5 WILD-TYPE" "POP5 WILD-TYPE" 
    TCGA-US-A77J 
"POP5 WILD-TYPE" 
    TCGA-F2-6879     TCGA-F2-6880     TCGA-F2-7273     TCGA-F2-7276 
"POP5 WILD-TYPE" "POP5 WILD-TYPE" "POP5 WILD-TYPE" "POP5 WILD-TYPE" 
    TCGA-F2-A44G     TCGA-F2-A44H     TCGA-FB-A4P5     TCGA-FB-A4P6 
"POP5 WILD-TYPE" "POP5 WILD-TYPE" "POP5 WILD-TYPE" "POP5 WILD-TYPE" 
    TCGA-FB-A545     TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-FB-A7DR 
"POP5 WILD-TYPE" "POP5 WILD-TYPE" "POP5 WILD-TYPE" "POP5 WILD-TYPE" 
    TCGA-FZ-5920     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-H6-8124 
"POP5 WILD-TYPE" "POP5 WILD-TYPE" "POP5 WILD-TYPE"   "POP5 MUTATED" 
    TCGA-H6-A45N     TCGA-H8-A6C1     TCGA-HZ-7289     TCGA-HZ-7918 
"POP5 WILD-TYPE" "POP5 WILD-TYPE" "POP5 WILD-TYPE" "POP5 WILD-TYPE" 
    TCGA-HZ-7919     TCGA-HZ-7922     TCGA-HZ-7923     TCGA-HZ-7924 
"POP5 WILD-TYPE"   "POP5 MUTATED" "POP5 WILD-TYPE" "POP5 WILD-TYPE" 
    TCGA-HZ-7925     TCGA-HZ-7926     TCGA-HZ-8001     TCGA-HZ-8002 
"POP5 WILD-TYPE" "POP5 WILD-TYPE"   "POP5 MUTATED"   "POP5 MUTATED" 
    TCGA-HZ-8003     TCGA-HZ-8005     TCGA-HZ-8315     TCGA-HZ-8317 
  "POP5 MUTATED" "POP5 WILD-TYPE" "POP5 WILD-TYPE" "POP5 WILD-TYPE" 
    TCGA-HZ-8636     TCGA-HZ-8638     TCGA-HZ-A49G     TCGA-HZ-A49H 
"POP5 WILD-TYPE" "POP5 WILD-TYPE" "POP5 WILD-TYPE" "POP5 WILD-TYPE" 
    TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-IB-7644     TCGA-IB-7645 
"POP5 WILD-TYPE"   "POP5 MUTATED" "POP5 WILD-TYPE" "POP5 WILD-TYPE" 
    TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7651 
"POP5 WILD-TYPE" "POP5 WILD-TYPE" "POP5 WILD-TYPE" "POP5 WILD-TYPE" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887 
"POP5 WILD-TYPE" "POP5 WILD-TYPE" "POP5 WILD-TYPE" "POP5 WILD-TYPE" 
    TCGA-IB-7888     TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891 
"POP5 WILD-TYPE" "POP5 WILD-TYPE" "POP5 WILD-TYPE"   "POP5 MUTATED" 
    TCGA-IB-7893     TCGA-IB-7897     TCGA-IB-8126     TCGA-IB-8127 
"POP5 WILD-TYPE" "POP5 WILD-TYPE"   "POP5 MUTATED" "POP5 WILD-TYPE" 
    TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS 
"POP5 WILD-TYPE"   "POP5 MUTATED" "POP5 WILD-TYPE" "POP5 WILD-TYPE" 
    TCGA-IB-A5ST     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
"POP5 WILD-TYPE" "POP5 WILD-TYPE" "POP5 WILD-TYPE" "POP5 WILD-TYPE" 
    TCGA-PZ-A5RE     TCGA-Q3-A5QY     TCGA-US-A779     TCGA-US-A77E 
"POP5 WILD-TYPE" "POP5 WILD-TYPE" "POP5 WILD-TYPE" "POP5 WILD-TYPE" 
    TCGA-US-A77J 
"POP5 WILD-TYPE" 
[1] "hr="     "7.5e+07"
D88V2, continuous
                vv
clus             STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  POP5 MUTATED          0        1         1         6         2        0
  POP5 WILD-TYPE        1        3        10        45         0        3
D88V3, multiclass
                vv
clus             T1+T2 T3+T4
  POP5 MUTATED       1     9
  POP5 WILD-TYPE     5    57
D88V4, multiclass
       clus
vv      POP5 MUTATED POP5 WILD-TYPE
  T1+T2            1              5
  T3+T4            9             57
D88V5, binary
                cls
clus              0  1
  POP5 MUTATED    3  7
  POP5 WILD-TYPE 14 47
[1] "tbl2"
                cls
clus             [,1] [,2]
  POP5 MUTATED      3    7
  POP5 WILD-TYPE   14   47
   clus
vv  POP5 MUTATED POP5 WILD-TYPE
  0            3             14
  1            7             47
                vv
clus             M0 M1 MX
  POP5 MUTATED    4  0  6
  POP5 WILD-TYPE 35  3 24
D88V6, multiclass
    clus
vv   POP5 MUTATED POP5 WILD-TYPE
  M0            4             35
  M1            0              3
  MX            6             24
D88V7, binary
                cls
clus              0  1
  POP5 MUTATED    4  6
  POP5 WILD-TYPE 32 30
[1] "tbl2"
                cls
clus             [,1] [,2]
  POP5 MUTATED      4    6
  POP5 WILD-TYPE   32   30
        clus
vv       POP5 MUTATED POP5 WILD-TYPE
  FEMALE            4             32
  MALE              6             30
                vv
clus             PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  POP5 MUTATED                                     9
  POP5 WILD-TYPE                                  56
                vv
clus             PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  POP5 MUTATED                                       1
  POP5 WILD-TYPE                                     3
                vv
clus             PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  POP5 MUTATED                                                  0
  POP5 WILD-TYPE                                                2
D88V8, multiclass
                                                  clus
vv                                                 POP5 MUTATED POP5 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                         9             56
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                       1              3
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA            0              2
D88V9, continuous
D88V10, continuous
                vv
clus             R0 R1 RX
  POP5 MUTATED    7  3  0
  POP5 WILD-TYPE 35 21  2
D88V11, multiclass
    clus
vv   POP5 MUTATED POP5 WILD-TYPE
  R0            7             35
  R1            3             21
  RX            0              2
D88V12, continuous

Clustering(89) Variable = NF2 MUTATION ANALYSIS
D89V1, survival
               sevent
clus2            0  1
  NF2 MUTATED    2  3
  NF2 WILD-TYPE 38 26
  NF2 MUTATED NF2 WILD-TYPE 
            5            64 
  NF2 MUTATED NF2 WILD-TYPE 
            3            26 
$`NF2 MUTATED`
TCGA-HZ-8005 TCGA-HZ-8317 TCGA-IB-7646 TCGA-IB-7651 TCGA-IB-7652 
        3.95         0.53         4.77        19.82        15.65 

$`NF2 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P5 TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR 
        0.13        11.93        12.66         2.47         0.03         5.46 
TCGA-FZ-5920 TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 
        2.01        36.20        20.81        12.89         7.66        13.02 
TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 
        7.89         0.92         0.66         0.13         0.26        12.13 
TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8315 
       11.87         0.26         0.62         0.79         0.69         0.92 
TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK 
        0.16         2.99         0.76         0.95         6.38         1.51 
TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7885 TCGA-IB-7886 
       11.41        49.38        21.90        15.35        27.98         4.04 
TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-7893 
        3.62        43.79        15.81        19.66        16.04         3.85 
TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ 
       15.98         0.56        17.16        10.82         9.86         7.20 
TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W TCGA-PZ-A5RE 
       15.12         0.26         1.35         4.18         3.62         8.12 
TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
       13.68        16.80        14.14        18.67 

  NF2 MUTATED NF2 WILD-TYPE 
         0.53          0.03 
  NF2 MUTATED NF2 WILD-TYPE 
        19.82         49.38 
  NF2 MUTATED NF2 WILD-TYPE 
        4.770         7.775 
[1] "0.5 - 19.8 (4.8)" "0.0 - 49.4 (7.8)"
   TCGA-F2-6879    TCGA-F2-6880    TCGA-F2-7273    TCGA-F2-7276    TCGA-F2-A44G 
"NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" 
   TCGA-F2-A44H    TCGA-FB-A4P5    TCGA-FB-A4P6    TCGA-FB-A545    TCGA-FB-A5VM 
"NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" 
   TCGA-FB-A78T    TCGA-FB-A7DR    TCGA-FZ-5920    TCGA-FZ-5922    TCGA-FZ-5923 
"NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" 
   TCGA-H6-8124    TCGA-H6-A45N    TCGA-H8-A6C1    TCGA-HZ-7289    TCGA-HZ-7918 
"NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" 
   TCGA-HZ-7919    TCGA-HZ-7922    TCGA-HZ-7923    TCGA-HZ-7924    TCGA-HZ-7925 
"NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" 
   TCGA-HZ-7926    TCGA-HZ-8001    TCGA-HZ-8002    TCGA-HZ-8003    TCGA-HZ-8005 
"NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE"   "NF2 MUTATED" 
   TCGA-HZ-8315    TCGA-HZ-8317    TCGA-HZ-8636    TCGA-HZ-8638    TCGA-HZ-A49G 
"NF2 WILD-TYPE"   "NF2 MUTATED" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" 
   TCGA-HZ-A49H    TCGA-HZ-A4BH    TCGA-HZ-A4BK    TCGA-IB-7644    TCGA-IB-7645 
"NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" 
   TCGA-IB-7646    TCGA-IB-7647    TCGA-IB-7649    TCGA-IB-7651    TCGA-IB-7652 
  "NF2 MUTATED" "NF2 WILD-TYPE" "NF2 WILD-TYPE"   "NF2 MUTATED"   "NF2 MUTATED" 
   TCGA-IB-7885    TCGA-IB-7886    TCGA-IB-7887    TCGA-IB-7888    TCGA-IB-7889 
"NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" 
   TCGA-IB-7890    TCGA-IB-7891    TCGA-IB-7893    TCGA-IB-7897    TCGA-IB-8126 
"NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" 
   TCGA-IB-8127    TCGA-IB-A5SO    TCGA-IB-A5SP    TCGA-IB-A5SQ    TCGA-IB-A5SS 
"NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" 
   TCGA-IB-A5ST    TCGA-IB-A6UG    TCGA-LB-A7SX    TCGA-OE-A75W    TCGA-PZ-A5RE 
"NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" 
   TCGA-Q3-A5QY    TCGA-US-A779    TCGA-US-A77E    TCGA-US-A77J 
"NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" 
   TCGA-F2-6879    TCGA-F2-6880    TCGA-F2-7273    TCGA-F2-7276    TCGA-F2-A44G 
"NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" 
   TCGA-F2-A44H    TCGA-FB-A4P5    TCGA-FB-A4P6    TCGA-FB-A545    TCGA-FB-A5VM 
"NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" 
   TCGA-FB-A78T    TCGA-FB-A7DR    TCGA-FZ-5920    TCGA-FZ-5922    TCGA-FZ-5923 
"NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" 
   TCGA-H6-8124    TCGA-H6-A45N    TCGA-H8-A6C1    TCGA-HZ-7289    TCGA-HZ-7918 
"NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" 
   TCGA-HZ-7919    TCGA-HZ-7922    TCGA-HZ-7923    TCGA-HZ-7924    TCGA-HZ-7925 
"NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" 
   TCGA-HZ-7926    TCGA-HZ-8001    TCGA-HZ-8002    TCGA-HZ-8003    TCGA-HZ-8005 
"NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE"   "NF2 MUTATED" 
   TCGA-HZ-8315    TCGA-HZ-8317    TCGA-HZ-8636    TCGA-HZ-8638    TCGA-HZ-A49G 
"NF2 WILD-TYPE"   "NF2 MUTATED" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" 
   TCGA-HZ-A49H    TCGA-HZ-A4BH    TCGA-HZ-A4BK    TCGA-IB-7644    TCGA-IB-7645 
"NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" 
   TCGA-IB-7646    TCGA-IB-7647    TCGA-IB-7649    TCGA-IB-7651    TCGA-IB-7652 
  "NF2 MUTATED" "NF2 WILD-TYPE" "NF2 WILD-TYPE"   "NF2 MUTATED"   "NF2 MUTATED" 
   TCGA-IB-7885    TCGA-IB-7886    TCGA-IB-7887    TCGA-IB-7888    TCGA-IB-7889 
"NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" 
   TCGA-IB-7890    TCGA-IB-7891    TCGA-IB-7893    TCGA-IB-7897    TCGA-IB-8126 
"NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" 
   TCGA-IB-8127    TCGA-IB-A5SO    TCGA-IB-A5SP    TCGA-IB-A5SQ    TCGA-IB-A5SS 
"NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" 
   TCGA-IB-A5ST    TCGA-IB-A6UG    TCGA-LB-A7SX    TCGA-OE-A75W    TCGA-PZ-A5RE 
"NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" 
   TCGA-Q3-A5QY    TCGA-US-A779    TCGA-US-A77E    TCGA-US-A77J 
"NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" 
   TCGA-F2-6879    TCGA-F2-6880    TCGA-F2-7273    TCGA-F2-7276    TCGA-F2-A44G 
"NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" 
   TCGA-F2-A44H    TCGA-FB-A4P5    TCGA-FB-A4P6    TCGA-FB-A545    TCGA-FB-A5VM 
"NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" 
   TCGA-FB-A78T    TCGA-FB-A7DR    TCGA-FZ-5920    TCGA-FZ-5922    TCGA-FZ-5923 
"NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" 
   TCGA-H6-8124    TCGA-H6-A45N    TCGA-H8-A6C1    TCGA-HZ-7289    TCGA-HZ-7918 
"NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" 
   TCGA-HZ-7919    TCGA-HZ-7922    TCGA-HZ-7923    TCGA-HZ-7924    TCGA-HZ-7925 
"NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" 
   TCGA-HZ-7926    TCGA-HZ-8001    TCGA-HZ-8002    TCGA-HZ-8003    TCGA-HZ-8005 
"NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE"   "NF2 MUTATED" 
   TCGA-HZ-8315    TCGA-HZ-8317    TCGA-HZ-8636    TCGA-HZ-8638    TCGA-HZ-A49G 
"NF2 WILD-TYPE"   "NF2 MUTATED" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" 
   TCGA-HZ-A49H    TCGA-HZ-A4BH    TCGA-HZ-A4BK    TCGA-IB-7644    TCGA-IB-7645 
"NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" 
   TCGA-IB-7646    TCGA-IB-7647    TCGA-IB-7649    TCGA-IB-7651    TCGA-IB-7652 
  "NF2 MUTATED" "NF2 WILD-TYPE" "NF2 WILD-TYPE"   "NF2 MUTATED"   "NF2 MUTATED" 
   TCGA-IB-7885    TCGA-IB-7886    TCGA-IB-7887    TCGA-IB-7888    TCGA-IB-7889 
"NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" 
   TCGA-IB-7890    TCGA-IB-7891    TCGA-IB-7893    TCGA-IB-7897    TCGA-IB-8126 
"NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" 
   TCGA-IB-8127    TCGA-IB-A5SO    TCGA-IB-A5SP    TCGA-IB-A5SQ    TCGA-IB-A5SS 
"NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" 
   TCGA-IB-A5ST    TCGA-IB-A6UG    TCGA-LB-A7SX    TCGA-OE-A75W    TCGA-PZ-A5RE 
"NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" 
   TCGA-Q3-A5QY    TCGA-US-A779    TCGA-US-A77E    TCGA-US-A77J 
"NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" 
[1] "hr=" "1.6"
D89V2, continuous
               vv
clus            STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  NF2 MUTATED          0        0         0         5         0        0
  NF2 WILD-TYPE        1        4        11        46         2        3
D89V3, multiclass
               vv
clus            T1+T2 T3+T4
  NF2 MUTATED       0     5
  NF2 WILD-TYPE     6    61
D89V4, multiclass
       clus
vv      NF2 MUTATED NF2 WILD-TYPE
  T1+T2           0             6
  T3+T4           5            61
D89V5, binary
               cls
clus             0  1
  NF2 MUTATED    0  5
  NF2 WILD-TYPE 17 49
[1] "tbl2"
               cls
clus            [,1] [,2]
  NF2 MUTATED      0    5
  NF2 WILD-TYPE   17   49
   clus
vv  NF2 MUTATED NF2 WILD-TYPE
  0           0            17
  1           5            49
               vv
clus            M0 M1 MX
  NF2 MUTATED    3  0  2
  NF2 WILD-TYPE 36  3 28
D89V6, multiclass
    clus
vv   NF2 MUTATED NF2 WILD-TYPE
  M0           3            36
  M1           0             3
  MX           2            28
D89V7, binary
               cls
clus             0  1
  NF2 MUTATED    3  2
  NF2 WILD-TYPE 33 34
[1] "tbl2"
               cls
clus            [,1] [,2]
  NF2 MUTATED      3    2
  NF2 WILD-TYPE   33   34
        clus
vv       NF2 MUTATED NF2 WILD-TYPE
  FEMALE           3            33
  MALE             2            34
               vv
clus            PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  NF2 MUTATED                                     5
  NF2 WILD-TYPE                                  60
               vv
clus            PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  NF2 MUTATED                                       0
  NF2 WILD-TYPE                                     4
               vv
clus            PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  NF2 MUTATED                                                  0
  NF2 WILD-TYPE                                                2
D89V8, multiclass
                                                  clus
vv                                                 NF2 MUTATED NF2 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                        5            60
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                      0             4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA           0             2
D89V9, continuous
[1] "Remove cluster labels:" "NF2 MUTATED"           
clus
  NF2 MUTATED NF2 WILD-TYPE 
            1            21 
   TCGA-F2-6880    TCGA-FB-A4P5    TCGA-FB-A4P6    TCGA-FB-A5VM    TCGA-FB-A78T 
"NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" 
   TCGA-FB-A7DR    TCGA-H6-8124    TCGA-H6-A45N    TCGA-H8-A6C1    TCGA-IB-7644 
"NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" 
   TCGA-IB-7649    TCGA-IB-7885    TCGA-IB-7886    TCGA-IB-7887    TCGA-IB-7891 
"NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" 
   TCGA-IB-8126    TCGA-IB-8127    TCGA-IB-A5SS    TCGA-IB-A6UG    TCGA-LB-A7SX 
"NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" 
   TCGA-OE-A75W 
"NF2 WILD-TYPE" 
D89V10, continuous
[1] "Remove cluster labels:" "NF2 MUTATED"           
clus
  NF2 MUTATED NF2 WILD-TYPE 
            1            18 
   TCGA-FB-A4P5    TCGA-FB-A4P6    TCGA-FB-A5VM    TCGA-FB-A78T    TCGA-FB-A7DR 
"NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" 
   TCGA-H6-8124    TCGA-H8-A6C1    TCGA-IB-7644    TCGA-IB-7649    TCGA-IB-7885 
"NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" 
   TCGA-IB-7886    TCGA-IB-7891    TCGA-IB-8126    TCGA-IB-8127    TCGA-IB-A5SS 
"NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" 
   TCGA-IB-A6UG    TCGA-LB-A7SX    TCGA-OE-A75W 
"NF2 WILD-TYPE" "NF2 WILD-TYPE" "NF2 WILD-TYPE" 
               vv
clus            R0 R1 RX
  NF2 MUTATED    1  4  0
  NF2 WILD-TYPE 41 20  2
D89V11, multiclass
    clus
vv   NF2 MUTATED NF2 WILD-TYPE
  R0           1            41
  R1           4            20
  RX           0             2
D89V12, continuous

Clustering(90) Variable = RIOK1 MUTATION ANALYSIS
D90V1, survival
                 sevent
clus2              0  1
  RIOK1 MUTATED    6  8
  RIOK1 WILD-TYPE 34 21
  RIOK1 MUTATED RIOK1 WILD-TYPE 
             14              55 
  RIOK1 MUTATED RIOK1 WILD-TYPE 
              8              21 
$`RIOK1 MUTATED`
TCGA-FB-A4P5 TCGA-H6-A45N TCGA-HZ-8003 TCGA-HZ-8317 TCGA-HZ-A4BH TCGA-IB-7644 
        0.13         7.66         0.69         0.53         6.38        11.41 
TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7651 TCGA-IB-7888 TCGA-IB-7890 TCGA-IB-7891 
        4.77        21.90        19.82        43.79        19.66        16.04 
TCGA-IB-8127 TCGA-PZ-A5RE 
       17.16         8.12 

$`RIOK1 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR TCGA-FZ-5920 
       11.93        12.66         2.47         0.03         5.46         2.01 
TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 TCGA-H8-A6C1 TCGA-HZ-7289 TCGA-HZ-7918 
       36.20        20.81        12.89        13.02         7.89         0.92 
TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 
        0.66         0.13         0.26        12.13        11.87         0.26 
TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8636 TCGA-HZ-8638 
        0.62         0.79         3.95         0.92         0.16         2.99 
TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BK TCGA-IB-7645 TCGA-IB-7649 TCGA-IB-7652 
        0.76         0.95         1.51        49.38        15.35        15.65 
TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7889 TCGA-IB-7893 TCGA-IB-7897 
       27.98         4.04         3.62        15.81         3.85        15.98 
TCGA-IB-8126 TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST 
        0.56        10.82         9.86         7.20        15.12         0.26 
TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E 
        1.35         4.18         3.62        13.68        16.80        14.14 
TCGA-US-A77J 
       18.67 

  RIOK1 MUTATED RIOK1 WILD-TYPE 
           0.13            0.03 
  RIOK1 MUTATED RIOK1 WILD-TYPE 
          43.79           49.38 
  RIOK1 MUTATED RIOK1 WILD-TYPE 
          9.765           7.100 
[1] "0.1 - 43.8 (9.8)" "0.0 - 49.4 (7.1)"
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"RIOK1 WILD-TYPE" "RIOK1 WILD-TYPE" "RIOK1 WILD-TYPE" "RIOK1 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"RIOK1 WILD-TYPE" "RIOK1 WILD-TYPE"   "RIOK1 MUTATED" "RIOK1 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"RIOK1 WILD-TYPE" "RIOK1 WILD-TYPE" "RIOK1 WILD-TYPE" "RIOK1 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"RIOK1 WILD-TYPE" "RIOK1 WILD-TYPE" "RIOK1 WILD-TYPE" "RIOK1 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
  "RIOK1 MUTATED" "RIOK1 WILD-TYPE" "RIOK1 WILD-TYPE" "RIOK1 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"RIOK1 WILD-TYPE" "RIOK1 WILD-TYPE" "RIOK1 WILD-TYPE" "RIOK1 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"RIOK1 WILD-TYPE" "RIOK1 WILD-TYPE" "RIOK1 WILD-TYPE" "RIOK1 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
  "RIOK1 MUTATED" "RIOK1 WILD-TYPE" "RIOK1 WILD-TYPE"   "RIOK1 MUTATED" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"RIOK1 WILD-TYPE" "RIOK1 WILD-TYPE" "RIOK1 WILD-TYPE" "RIOK1 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
  "RIOK1 MUTATED" "RIOK1 WILD-TYPE"   "RIOK1 MUTATED" "RIOK1 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
  "RIOK1 MUTATED"   "RIOK1 MUTATED" "RIOK1 WILD-TYPE"   "RIOK1 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"RIOK1 WILD-TYPE" "RIOK1 WILD-TYPE" "RIOK1 WILD-TYPE" "RIOK1 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
  "RIOK1 MUTATED" "RIOK1 WILD-TYPE"   "RIOK1 MUTATED"   "RIOK1 MUTATED" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"RIOK1 WILD-TYPE" "RIOK1 WILD-TYPE" "RIOK1 WILD-TYPE"   "RIOK1 MUTATED" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"RIOK1 WILD-TYPE" "RIOK1 WILD-TYPE" "RIOK1 WILD-TYPE" "RIOK1 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"RIOK1 WILD-TYPE" "RIOK1 WILD-TYPE" "RIOK1 WILD-TYPE" "RIOK1 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
  "RIOK1 MUTATED" "RIOK1 WILD-TYPE" "RIOK1 WILD-TYPE" "RIOK1 WILD-TYPE" 
     TCGA-US-A77J 
"RIOK1 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"RIOK1 WILD-TYPE" "RIOK1 WILD-TYPE" "RIOK1 WILD-TYPE" "RIOK1 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"RIOK1 WILD-TYPE" "RIOK1 WILD-TYPE"   "RIOK1 MUTATED" "RIOK1 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"RIOK1 WILD-TYPE" "RIOK1 WILD-TYPE" "RIOK1 WILD-TYPE" "RIOK1 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"RIOK1 WILD-TYPE" "RIOK1 WILD-TYPE" "RIOK1 WILD-TYPE" "RIOK1 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
  "RIOK1 MUTATED" "RIOK1 WILD-TYPE" "RIOK1 WILD-TYPE" "RIOK1 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"RIOK1 WILD-TYPE" "RIOK1 WILD-TYPE" "RIOK1 WILD-TYPE" "RIOK1 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"RIOK1 WILD-TYPE" "RIOK1 WILD-TYPE" "RIOK1 WILD-TYPE" "RIOK1 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
  "RIOK1 MUTATED" "RIOK1 WILD-TYPE" "RIOK1 WILD-TYPE"   "RIOK1 MUTATED" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"RIOK1 WILD-TYPE" "RIOK1 WILD-TYPE" "RIOK1 WILD-TYPE" "RIOK1 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
  "RIOK1 MUTATED" "RIOK1 WILD-TYPE"   "RIOK1 MUTATED" "RIOK1 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
  "RIOK1 MUTATED"   "RIOK1 MUTATED" "RIOK1 WILD-TYPE"   "RIOK1 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"RIOK1 WILD-TYPE" "RIOK1 WILD-TYPE" "RIOK1 WILD-TYPE" "RIOK1 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
  "RIOK1 MUTATED" "RIOK1 WILD-TYPE"   "RIOK1 MUTATED"   "RIOK1 MUTATED" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"RIOK1 WILD-TYPE" "RIOK1 WILD-TYPE" "RIOK1 WILD-TYPE"   "RIOK1 MUTATED" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"RIOK1 WILD-TYPE" "RIOK1 WILD-TYPE" "RIOK1 WILD-TYPE" "RIOK1 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"RIOK1 WILD-TYPE" "RIOK1 WILD-TYPE" "RIOK1 WILD-TYPE" "RIOK1 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
  "RIOK1 MUTATED" "RIOK1 WILD-TYPE" "RIOK1 WILD-TYPE" "RIOK1 WILD-TYPE" 
     TCGA-US-A77J 
"RIOK1 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"RIOK1 WILD-TYPE" "RIOK1 WILD-TYPE" "RIOK1 WILD-TYPE" "RIOK1 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"RIOK1 WILD-TYPE" "RIOK1 WILD-TYPE"   "RIOK1 MUTATED" "RIOK1 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"RIOK1 WILD-TYPE" "RIOK1 WILD-TYPE" "RIOK1 WILD-TYPE" "RIOK1 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"RIOK1 WILD-TYPE" "RIOK1 WILD-TYPE" "RIOK1 WILD-TYPE" "RIOK1 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
  "RIOK1 MUTATED" "RIOK1 WILD-TYPE" "RIOK1 WILD-TYPE" "RIOK1 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"RIOK1 WILD-TYPE" "RIOK1 WILD-TYPE" "RIOK1 WILD-TYPE" "RIOK1 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"RIOK1 WILD-TYPE" "RIOK1 WILD-TYPE" "RIOK1 WILD-TYPE" "RIOK1 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
  "RIOK1 MUTATED" "RIOK1 WILD-TYPE" "RIOK1 WILD-TYPE"   "RIOK1 MUTATED" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"RIOK1 WILD-TYPE" "RIOK1 WILD-TYPE" "RIOK1 WILD-TYPE" "RIOK1 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
  "RIOK1 MUTATED" "RIOK1 WILD-TYPE"   "RIOK1 MUTATED" "RIOK1 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
  "RIOK1 MUTATED"   "RIOK1 MUTATED" "RIOK1 WILD-TYPE"   "RIOK1 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"RIOK1 WILD-TYPE" "RIOK1 WILD-TYPE" "RIOK1 WILD-TYPE" "RIOK1 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
  "RIOK1 MUTATED" "RIOK1 WILD-TYPE"   "RIOK1 MUTATED"   "RIOK1 MUTATED" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"RIOK1 WILD-TYPE" "RIOK1 WILD-TYPE" "RIOK1 WILD-TYPE"   "RIOK1 MUTATED" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"RIOK1 WILD-TYPE" "RIOK1 WILD-TYPE" "RIOK1 WILD-TYPE" "RIOK1 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"RIOK1 WILD-TYPE" "RIOK1 WILD-TYPE" "RIOK1 WILD-TYPE" "RIOK1 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
  "RIOK1 MUTATED" "RIOK1 WILD-TYPE" "RIOK1 WILD-TYPE" "RIOK1 WILD-TYPE" 
     TCGA-US-A77J 
"RIOK1 WILD-TYPE" 
[1] "hr=" "1.1"
D90V2, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  RIOK1 MUTATED          0        1         1        11         0        1
  RIOK1 WILD-TYPE        1        3        10        40         2        2
D90V3, multiclass
                 vv
clus              T1+T2 T3+T4
  RIOK1 MUTATED       1    13
  RIOK1 WILD-TYPE     5    53
D90V4, multiclass
       clus
vv      RIOK1 MUTATED RIOK1 WILD-TYPE
  T1+T2             1               5
  T3+T4            13              53
D90V5, binary
                 cls
clus               0  1
  RIOK1 MUTATED    2 12
  RIOK1 WILD-TYPE 15 42
[1] "tbl2"
                 cls
clus              [,1] [,2]
  RIOK1 MUTATED      2   12
  RIOK1 WILD-TYPE   15   42
   clus
vv  RIOK1 MUTATED RIOK1 WILD-TYPE
  0             2              15
  1            12              42
                 vv
clus              M0 M1 MX
  RIOK1 MUTATED    7  1  6
  RIOK1 WILD-TYPE 32  2 24
D90V6, multiclass
    clus
vv   RIOK1 MUTATED RIOK1 WILD-TYPE
  M0             7              32
  M1             1               2
  MX             6              24
D90V7, binary
                 cls
clus               0  1
  RIOK1 MUTATED    9  5
  RIOK1 WILD-TYPE 27 31
[1] "tbl2"
                 cls
clus              [,1] [,2]
  RIOK1 MUTATED      9    5
  RIOK1 WILD-TYPE   27   31
        clus
vv       RIOK1 MUTATED RIOK1 WILD-TYPE
  FEMALE             9              27
  MALE               5              31
                 vv
clus              PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  RIOK1 MUTATED                                    13
  RIOK1 WILD-TYPE                                  52
                 vv
clus              PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  RIOK1 MUTATED                                       1
  RIOK1 WILD-TYPE                                     3
                 vv
clus              PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  RIOK1 MUTATED                                                  0
  RIOK1 WILD-TYPE                                                2
D90V8, multiclass
                                                  clus
vv                                                 RIOK1 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                         13
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                        1
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA             0
                                                  clus
vv                                                 RIOK1 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                           52
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                          3
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA               2
D90V9, continuous
D90V10, continuous
                 vv
clus              R0 R1 RX
  RIOK1 MUTATED    6  6  0
  RIOK1 WILD-TYPE 36 18  2
D90V11, multiclass
    clus
vv   RIOK1 MUTATED RIOK1 WILD-TYPE
  R0             6              36
  R1             6              18
  RX             0               2
D90V12, continuous

Clustering(91) Variable = OR6C65 MUTATION ANALYSIS
D91V1, survival
                  sevent
clus2               0  1
  OR6C65 MUTATED    3  1
  OR6C65 WILD-TYPE 37 28
  OR6C65 MUTATED OR6C65 WILD-TYPE 
               4               65 
  OR6C65 MUTATED OR6C65 WILD-TYPE 
               1               28 
$`OR6C65 MUTATED`
TCGA-F2-A44H TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-8005 
       19.27         0.13         0.26         3.95 

$`OR6C65 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-FB-A4P5 
       10.98         9.70        11.84         7.10         5.03         0.13 
TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR TCGA-FZ-5920 
       11.93        12.66         2.47         0.03         5.46         2.01 
TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7289 
       36.20        20.81        12.89         7.66        13.02         7.89 
TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8001 
        0.92         0.66        12.13        11.87         0.26         0.62 
TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8636 TCGA-HZ-8638 
        0.79         0.69         0.92         0.53         0.16         2.99 
TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7645 
        0.76         0.95         6.38         1.51        11.41        49.38 
TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7651 TCGA-IB-7652 TCGA-IB-7885 
        4.77        21.90        15.35        19.82        15.65        27.98 
TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 
        4.04         3.62        43.79        15.81        19.66        16.04 
TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP 
        3.85        15.98         0.56        17.16        10.82         9.86 
TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W 
        7.20        15.12         0.26         1.35         4.18         3.62 
TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
        8.12        13.68        16.80        14.14        18.67 

  OR6C65 MUTATED OR6C65 WILD-TYPE 
            0.13             0.03 
  OR6C65 MUTATED OR6C65 WILD-TYPE 
           19.27            49.38 
  OR6C65 MUTATED OR6C65 WILD-TYPE 
           2.105            7.890 
[1] "0.1 - 19.3 (2.1)" "0.0 - 49.4 (7.9)"
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
"OR6C65 WILD-TYPE" "OR6C65 WILD-TYPE" "OR6C65 WILD-TYPE" "OR6C65 WILD-TYPE" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"OR6C65 WILD-TYPE"   "OR6C65 MUTATED" "OR6C65 WILD-TYPE" "OR6C65 WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
"OR6C65 WILD-TYPE" "OR6C65 WILD-TYPE" "OR6C65 WILD-TYPE" "OR6C65 WILD-TYPE" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"OR6C65 WILD-TYPE" "OR6C65 WILD-TYPE" "OR6C65 WILD-TYPE" "OR6C65 WILD-TYPE" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
"OR6C65 WILD-TYPE" "OR6C65 WILD-TYPE" "OR6C65 WILD-TYPE" "OR6C65 WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
"OR6C65 WILD-TYPE"   "OR6C65 MUTATED"   "OR6C65 MUTATED" "OR6C65 WILD-TYPE" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"OR6C65 WILD-TYPE" "OR6C65 WILD-TYPE" "OR6C65 WILD-TYPE" "OR6C65 WILD-TYPE" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
"OR6C65 WILD-TYPE"   "OR6C65 MUTATED" "OR6C65 WILD-TYPE" "OR6C65 WILD-TYPE" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
"OR6C65 WILD-TYPE" "OR6C65 WILD-TYPE" "OR6C65 WILD-TYPE" "OR6C65 WILD-TYPE" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
"OR6C65 WILD-TYPE" "OR6C65 WILD-TYPE" "OR6C65 WILD-TYPE" "OR6C65 WILD-TYPE" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
"OR6C65 WILD-TYPE" "OR6C65 WILD-TYPE" "OR6C65 WILD-TYPE" "OR6C65 WILD-TYPE" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
"OR6C65 WILD-TYPE" "OR6C65 WILD-TYPE" "OR6C65 WILD-TYPE" "OR6C65 WILD-TYPE" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
"OR6C65 WILD-TYPE" "OR6C65 WILD-TYPE" "OR6C65 WILD-TYPE" "OR6C65 WILD-TYPE" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
"OR6C65 WILD-TYPE" "OR6C65 WILD-TYPE" "OR6C65 WILD-TYPE" "OR6C65 WILD-TYPE" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"OR6C65 WILD-TYPE" "OR6C65 WILD-TYPE" "OR6C65 WILD-TYPE" "OR6C65 WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"OR6C65 WILD-TYPE" "OR6C65 WILD-TYPE" "OR6C65 WILD-TYPE" "OR6C65 WILD-TYPE" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
"OR6C65 WILD-TYPE" "OR6C65 WILD-TYPE" "OR6C65 WILD-TYPE" "OR6C65 WILD-TYPE" 
      TCGA-US-A77J 
"OR6C65 WILD-TYPE" 
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
"OR6C65 WILD-TYPE" "OR6C65 WILD-TYPE" "OR6C65 WILD-TYPE" "OR6C65 WILD-TYPE" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"OR6C65 WILD-TYPE"   "OR6C65 MUTATED" "OR6C65 WILD-TYPE" "OR6C65 WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
"OR6C65 WILD-TYPE" "OR6C65 WILD-TYPE" "OR6C65 WILD-TYPE" "OR6C65 WILD-TYPE" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"OR6C65 WILD-TYPE" "OR6C65 WILD-TYPE" "OR6C65 WILD-TYPE" "OR6C65 WILD-TYPE" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
"OR6C65 WILD-TYPE" "OR6C65 WILD-TYPE" "OR6C65 WILD-TYPE" "OR6C65 WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
"OR6C65 WILD-TYPE"   "OR6C65 MUTATED"   "OR6C65 MUTATED" "OR6C65 WILD-TYPE" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"OR6C65 WILD-TYPE" "OR6C65 WILD-TYPE" "OR6C65 WILD-TYPE" "OR6C65 WILD-TYPE" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
"OR6C65 WILD-TYPE"   "OR6C65 MUTATED" "OR6C65 WILD-TYPE" "OR6C65 WILD-TYPE" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
"OR6C65 WILD-TYPE" "OR6C65 WILD-TYPE" "OR6C65 WILD-TYPE" "OR6C65 WILD-TYPE" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
"OR6C65 WILD-TYPE" "OR6C65 WILD-TYPE" "OR6C65 WILD-TYPE" "OR6C65 WILD-TYPE" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
"OR6C65 WILD-TYPE" "OR6C65 WILD-TYPE" "OR6C65 WILD-TYPE" "OR6C65 WILD-TYPE" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
"OR6C65 WILD-TYPE" "OR6C65 WILD-TYPE" "OR6C65 WILD-TYPE" "OR6C65 WILD-TYPE" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
"OR6C65 WILD-TYPE" "OR6C65 WILD-TYPE" "OR6C65 WILD-TYPE" "OR6C65 WILD-TYPE" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
"OR6C65 WILD-TYPE" "OR6C65 WILD-TYPE" "OR6C65 WILD-TYPE" "OR6C65 WILD-TYPE" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"OR6C65 WILD-TYPE" "OR6C65 WILD-TYPE" "OR6C65 WILD-TYPE" "OR6C65 WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"OR6C65 WILD-TYPE" "OR6C65 WILD-TYPE" "OR6C65 WILD-TYPE" "OR6C65 WILD-TYPE" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
"OR6C65 WILD-TYPE" "OR6C65 WILD-TYPE" "OR6C65 WILD-TYPE" "OR6C65 WILD-TYPE" 
      TCGA-US-A77J 
"OR6C65 WILD-TYPE" 
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
"OR6C65 WILD-TYPE" "OR6C65 WILD-TYPE" "OR6C65 WILD-TYPE" "OR6C65 WILD-TYPE" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"OR6C65 WILD-TYPE"   "OR6C65 MUTATED" "OR6C65 WILD-TYPE" "OR6C65 WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
"OR6C65 WILD-TYPE" "OR6C65 WILD-TYPE" "OR6C65 WILD-TYPE" "OR6C65 WILD-TYPE" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"OR6C65 WILD-TYPE" "OR6C65 WILD-TYPE" "OR6C65 WILD-TYPE" "OR6C65 WILD-TYPE" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
"OR6C65 WILD-TYPE" "OR6C65 WILD-TYPE" "OR6C65 WILD-TYPE" "OR6C65 WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
"OR6C65 WILD-TYPE"   "OR6C65 MUTATED"   "OR6C65 MUTATED" "OR6C65 WILD-TYPE" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"OR6C65 WILD-TYPE" "OR6C65 WILD-TYPE" "OR6C65 WILD-TYPE" "OR6C65 WILD-TYPE" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
"OR6C65 WILD-TYPE"   "OR6C65 MUTATED" "OR6C65 WILD-TYPE" "OR6C65 WILD-TYPE" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
"OR6C65 WILD-TYPE" "OR6C65 WILD-TYPE" "OR6C65 WILD-TYPE" "OR6C65 WILD-TYPE" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
"OR6C65 WILD-TYPE" "OR6C65 WILD-TYPE" "OR6C65 WILD-TYPE" "OR6C65 WILD-TYPE" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
"OR6C65 WILD-TYPE" "OR6C65 WILD-TYPE" "OR6C65 WILD-TYPE" "OR6C65 WILD-TYPE" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
"OR6C65 WILD-TYPE" "OR6C65 WILD-TYPE" "OR6C65 WILD-TYPE" "OR6C65 WILD-TYPE" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
"OR6C65 WILD-TYPE" "OR6C65 WILD-TYPE" "OR6C65 WILD-TYPE" "OR6C65 WILD-TYPE" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
"OR6C65 WILD-TYPE" "OR6C65 WILD-TYPE" "OR6C65 WILD-TYPE" "OR6C65 WILD-TYPE" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"OR6C65 WILD-TYPE" "OR6C65 WILD-TYPE" "OR6C65 WILD-TYPE" "OR6C65 WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"OR6C65 WILD-TYPE" "OR6C65 WILD-TYPE" "OR6C65 WILD-TYPE" "OR6C65 WILD-TYPE" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
"OR6C65 WILD-TYPE" "OR6C65 WILD-TYPE" "OR6C65 WILD-TYPE" "OR6C65 WILD-TYPE" 
      TCGA-US-A77J 
"OR6C65 WILD-TYPE" 
[1] "hr=" "1"  
D91V2, continuous
                  vv
clus               STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  OR6C65 MUTATED          0        1         2         2         0        0
  OR6C65 WILD-TYPE        1        3         9        49         2        3
D91V3, multiclass
                  vv
clus               T1+T2 T3+T4
  OR6C65 MUTATED       1     4
  OR6C65 WILD-TYPE     5    62
D91V4, multiclass
       clus
vv      OR6C65 MUTATED OR6C65 WILD-TYPE
  T1+T2              1                5
  T3+T4              4               62
D91V5, binary
                  cls
clus                0  1
  OR6C65 MUTATED    3  2
  OR6C65 WILD-TYPE 14 52
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR6C65 MUTATED      3    2
  OR6C65 WILD-TYPE   14   52
   clus
vv  OR6C65 MUTATED OR6C65 WILD-TYPE
  0              3               14
  1              2               52
                  vv
clus               M0 M1 MX
  OR6C65 MUTATED    1  0  4
  OR6C65 WILD-TYPE 38  3 26
D91V6, multiclass
    clus
vv   OR6C65 MUTATED OR6C65 WILD-TYPE
  M0              1               38
  M1              0                3
  MX              4               26
D91V7, binary
                  cls
clus                0  1
  OR6C65 MUTATED    1  4
  OR6C65 WILD-TYPE 35 32
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR6C65 MUTATED      1    4
  OR6C65 WILD-TYPE   35   32
        clus
vv       OR6C65 MUTATED OR6C65 WILD-TYPE
  FEMALE              1               35
  MALE                4               32
                  vv
clus               PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  OR6C65 MUTATED                                     5
  OR6C65 WILD-TYPE                                  60
                  vv
clus               PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  OR6C65 MUTATED                                       0
  OR6C65 WILD-TYPE                                     4
                  vv
clus               PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  OR6C65 MUTATED                                                  0
  OR6C65 WILD-TYPE                                                2
D91V8, multiclass
                                                  clus
vv                                                 OR6C65 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                           5
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                         0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA              0
                                                  clus
vv                                                 OR6C65 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                            60
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                           4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                2
D91V9, continuous
D91V10, continuous
                  vv
clus               R0 R1 RX
  OR6C65 MUTATED    4  1  0
  OR6C65 WILD-TYPE 38 23  2
D91V11, multiclass
    clus
vv   OR6C65 MUTATED OR6C65 WILD-TYPE
  R0              4               38
  R1              1               23
  RX              0                2
D91V12, continuous

Clustering(92) Variable = ZBTB24 MUTATION ANALYSIS
D92V1, survival
                  sevent
clus2               0  1
  ZBTB24 MUTATED    3  2
  ZBTB24 WILD-TYPE 37 27
  ZBTB24 MUTATED ZBTB24 WILD-TYPE 
               5               64 
  ZBTB24 MUTATED ZBTB24 WILD-TYPE 
               2               27 
$`ZBTB24 MUTATED`
TCGA-FB-A4P6 TCGA-HZ-A4BK TCGA-IB-7652 TCGA-IB-7888 TCGA-IB-7893 
       11.93         1.51        15.65        43.79         3.85 

$`ZBTB24 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P5 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR TCGA-FZ-5920 
        0.13        12.66         2.47         0.03         5.46         2.01 
TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7289 
       36.20        20.81        12.89         7.66        13.02         7.89 
TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 
        0.92         0.66         0.13         0.26        12.13        11.87 
TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 
        0.26         0.62         0.79         0.69         3.95         0.92 
TCGA-HZ-8317 TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH 
        0.53         0.16         2.99         0.76         0.95         6.38 
TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7651 
       11.41        49.38         4.77        21.90        15.35        19.82 
TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 
       27.98         4.04         3.62        15.81        19.66        16.04 
TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ 
       15.98         0.56        17.16        10.82         9.86         7.20 
TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W TCGA-PZ-A5RE 
       15.12         0.26         1.35         4.18         3.62         8.12 
TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
       13.68        16.80        14.14        18.67 

  ZBTB24 MUTATED ZBTB24 WILD-TYPE 
            1.51             0.03 
  ZBTB24 MUTATED ZBTB24 WILD-TYPE 
           43.79            49.38 
  ZBTB24 MUTATED ZBTB24 WILD-TYPE 
           11.93             7.43 
[1] "1.5 - 43.8 (11.9)" "0.0 - 49.4 (7.4)" 
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
"ZBTB24 WILD-TYPE" "ZBTB24 WILD-TYPE" "ZBTB24 WILD-TYPE" "ZBTB24 WILD-TYPE" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"ZBTB24 WILD-TYPE" "ZBTB24 WILD-TYPE" "ZBTB24 WILD-TYPE"   "ZBTB24 MUTATED" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
"ZBTB24 WILD-TYPE" "ZBTB24 WILD-TYPE" "ZBTB24 WILD-TYPE" "ZBTB24 WILD-TYPE" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"ZBTB24 WILD-TYPE" "ZBTB24 WILD-TYPE" "ZBTB24 WILD-TYPE" "ZBTB24 WILD-TYPE" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
"ZBTB24 WILD-TYPE" "ZBTB24 WILD-TYPE" "ZBTB24 WILD-TYPE" "ZBTB24 WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
"ZBTB24 WILD-TYPE" "ZBTB24 WILD-TYPE" "ZBTB24 WILD-TYPE" "ZBTB24 WILD-TYPE" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"ZBTB24 WILD-TYPE" "ZBTB24 WILD-TYPE" "ZBTB24 WILD-TYPE" "ZBTB24 WILD-TYPE" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
"ZBTB24 WILD-TYPE" "ZBTB24 WILD-TYPE" "ZBTB24 WILD-TYPE" "ZBTB24 WILD-TYPE" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
"ZBTB24 WILD-TYPE" "ZBTB24 WILD-TYPE" "ZBTB24 WILD-TYPE" "ZBTB24 WILD-TYPE" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
"ZBTB24 WILD-TYPE"   "ZBTB24 MUTATED" "ZBTB24 WILD-TYPE" "ZBTB24 WILD-TYPE" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
"ZBTB24 WILD-TYPE" "ZBTB24 WILD-TYPE" "ZBTB24 WILD-TYPE" "ZBTB24 WILD-TYPE" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
  "ZBTB24 MUTATED" "ZBTB24 WILD-TYPE" "ZBTB24 WILD-TYPE" "ZBTB24 WILD-TYPE" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
  "ZBTB24 MUTATED" "ZBTB24 WILD-TYPE" "ZBTB24 WILD-TYPE" "ZBTB24 WILD-TYPE" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
  "ZBTB24 MUTATED" "ZBTB24 WILD-TYPE" "ZBTB24 WILD-TYPE" "ZBTB24 WILD-TYPE" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"ZBTB24 WILD-TYPE" "ZBTB24 WILD-TYPE" "ZBTB24 WILD-TYPE" "ZBTB24 WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"ZBTB24 WILD-TYPE" "ZBTB24 WILD-TYPE" "ZBTB24 WILD-TYPE" "ZBTB24 WILD-TYPE" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
"ZBTB24 WILD-TYPE" "ZBTB24 WILD-TYPE" "ZBTB24 WILD-TYPE" "ZBTB24 WILD-TYPE" 
      TCGA-US-A77J 
"ZBTB24 WILD-TYPE" 
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
"ZBTB24 WILD-TYPE" "ZBTB24 WILD-TYPE" "ZBTB24 WILD-TYPE" "ZBTB24 WILD-TYPE" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"ZBTB24 WILD-TYPE" "ZBTB24 WILD-TYPE" "ZBTB24 WILD-TYPE"   "ZBTB24 MUTATED" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
"ZBTB24 WILD-TYPE" "ZBTB24 WILD-TYPE" "ZBTB24 WILD-TYPE" "ZBTB24 WILD-TYPE" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"ZBTB24 WILD-TYPE" "ZBTB24 WILD-TYPE" "ZBTB24 WILD-TYPE" "ZBTB24 WILD-TYPE" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
"ZBTB24 WILD-TYPE" "ZBTB24 WILD-TYPE" "ZBTB24 WILD-TYPE" "ZBTB24 WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
"ZBTB24 WILD-TYPE" "ZBTB24 WILD-TYPE" "ZBTB24 WILD-TYPE" "ZBTB24 WILD-TYPE" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"ZBTB24 WILD-TYPE" "ZBTB24 WILD-TYPE" "ZBTB24 WILD-TYPE" "ZBTB24 WILD-TYPE" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
"ZBTB24 WILD-TYPE" "ZBTB24 WILD-TYPE" "ZBTB24 WILD-TYPE" "ZBTB24 WILD-TYPE" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
"ZBTB24 WILD-TYPE" "ZBTB24 WILD-TYPE" "ZBTB24 WILD-TYPE" "ZBTB24 WILD-TYPE" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
"ZBTB24 WILD-TYPE"   "ZBTB24 MUTATED" "ZBTB24 WILD-TYPE" "ZBTB24 WILD-TYPE" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
"ZBTB24 WILD-TYPE" "ZBTB24 WILD-TYPE" "ZBTB24 WILD-TYPE" "ZBTB24 WILD-TYPE" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
  "ZBTB24 MUTATED" "ZBTB24 WILD-TYPE" "ZBTB24 WILD-TYPE" "ZBTB24 WILD-TYPE" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
  "ZBTB24 MUTATED" "ZBTB24 WILD-TYPE" "ZBTB24 WILD-TYPE" "ZBTB24 WILD-TYPE" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
  "ZBTB24 MUTATED" "ZBTB24 WILD-TYPE" "ZBTB24 WILD-TYPE" "ZBTB24 WILD-TYPE" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"ZBTB24 WILD-TYPE" "ZBTB24 WILD-TYPE" "ZBTB24 WILD-TYPE" "ZBTB24 WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"ZBTB24 WILD-TYPE" "ZBTB24 WILD-TYPE" "ZBTB24 WILD-TYPE" "ZBTB24 WILD-TYPE" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
"ZBTB24 WILD-TYPE" "ZBTB24 WILD-TYPE" "ZBTB24 WILD-TYPE" "ZBTB24 WILD-TYPE" 
      TCGA-US-A77J 
"ZBTB24 WILD-TYPE" 
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
"ZBTB24 WILD-TYPE" "ZBTB24 WILD-TYPE" "ZBTB24 WILD-TYPE" "ZBTB24 WILD-TYPE" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"ZBTB24 WILD-TYPE" "ZBTB24 WILD-TYPE" "ZBTB24 WILD-TYPE"   "ZBTB24 MUTATED" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
"ZBTB24 WILD-TYPE" "ZBTB24 WILD-TYPE" "ZBTB24 WILD-TYPE" "ZBTB24 WILD-TYPE" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"ZBTB24 WILD-TYPE" "ZBTB24 WILD-TYPE" "ZBTB24 WILD-TYPE" "ZBTB24 WILD-TYPE" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
"ZBTB24 WILD-TYPE" "ZBTB24 WILD-TYPE" "ZBTB24 WILD-TYPE" "ZBTB24 WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
"ZBTB24 WILD-TYPE" "ZBTB24 WILD-TYPE" "ZBTB24 WILD-TYPE" "ZBTB24 WILD-TYPE" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"ZBTB24 WILD-TYPE" "ZBTB24 WILD-TYPE" "ZBTB24 WILD-TYPE" "ZBTB24 WILD-TYPE" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
"ZBTB24 WILD-TYPE" "ZBTB24 WILD-TYPE" "ZBTB24 WILD-TYPE" "ZBTB24 WILD-TYPE" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
"ZBTB24 WILD-TYPE" "ZBTB24 WILD-TYPE" "ZBTB24 WILD-TYPE" "ZBTB24 WILD-TYPE" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
"ZBTB24 WILD-TYPE"   "ZBTB24 MUTATED" "ZBTB24 WILD-TYPE" "ZBTB24 WILD-TYPE" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
"ZBTB24 WILD-TYPE" "ZBTB24 WILD-TYPE" "ZBTB24 WILD-TYPE" "ZBTB24 WILD-TYPE" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
  "ZBTB24 MUTATED" "ZBTB24 WILD-TYPE" "ZBTB24 WILD-TYPE" "ZBTB24 WILD-TYPE" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
  "ZBTB24 MUTATED" "ZBTB24 WILD-TYPE" "ZBTB24 WILD-TYPE" "ZBTB24 WILD-TYPE" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
  "ZBTB24 MUTATED" "ZBTB24 WILD-TYPE" "ZBTB24 WILD-TYPE" "ZBTB24 WILD-TYPE" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"ZBTB24 WILD-TYPE" "ZBTB24 WILD-TYPE" "ZBTB24 WILD-TYPE" "ZBTB24 WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"ZBTB24 WILD-TYPE" "ZBTB24 WILD-TYPE" "ZBTB24 WILD-TYPE" "ZBTB24 WILD-TYPE" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
"ZBTB24 WILD-TYPE" "ZBTB24 WILD-TYPE" "ZBTB24 WILD-TYPE" "ZBTB24 WILD-TYPE" 
      TCGA-US-A77J 
"ZBTB24 WILD-TYPE" 
[1] "hr=" "1.9"
D92V2, continuous
                  vv
clus               STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  ZBTB24 MUTATED          0        0         2         3         0        0
  ZBTB24 WILD-TYPE        1        4         9        48         2        3
D92V3, multiclass
                  vv
clus               T1+T2 T3+T4
  ZBTB24 MUTATED       0     5
  ZBTB24 WILD-TYPE     6    61
D92V4, multiclass
       clus
vv      ZBTB24 MUTATED ZBTB24 WILD-TYPE
  T1+T2              0                6
  T3+T4              5               61
D92V5, binary
                  cls
clus                0  1
  ZBTB24 MUTATED    2  3
  ZBTB24 WILD-TYPE 15 51
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ZBTB24 MUTATED      2    3
  ZBTB24 WILD-TYPE   15   51
   clus
vv  ZBTB24 MUTATED ZBTB24 WILD-TYPE
  0              2               15
  1              3               51
                  vv
clus               M0 M1 MX
  ZBTB24 MUTATED    3  0  2
  ZBTB24 WILD-TYPE 36  3 28
D92V6, multiclass
    clus
vv   ZBTB24 MUTATED ZBTB24 WILD-TYPE
  M0              3               36
  M1              0                3
  MX              2               28
D92V7, binary
                  cls
clus                0  1
  ZBTB24 MUTATED    2  3
  ZBTB24 WILD-TYPE 34 33
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ZBTB24 MUTATED      2    3
  ZBTB24 WILD-TYPE   34   33
        clus
vv       ZBTB24 MUTATED ZBTB24 WILD-TYPE
  FEMALE              2               34
  MALE                3               33
                  vv
clus               PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  ZBTB24 MUTATED                                     4
  ZBTB24 WILD-TYPE                                  61
                  vv
clus               PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  ZBTB24 MUTATED                                       1
  ZBTB24 WILD-TYPE                                     3
                  vv
clus               PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  ZBTB24 MUTATED                                                  0
  ZBTB24 WILD-TYPE                                                2
D92V8, multiclass
                                                  clus
vv                                                 ZBTB24 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                           4
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                         1
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA              0
                                                  clus
vv                                                 ZBTB24 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                            61
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                           3
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                2
D92V9, continuous
[1] "Remove cluster labels:" "ZBTB24 MUTATED"        
clus
  ZBTB24 MUTATED ZBTB24 WILD-TYPE 
               1               21 
      TCGA-F2-6880       TCGA-FB-A4P5       TCGA-FB-A5VM       TCGA-FB-A78T 
"ZBTB24 WILD-TYPE" "ZBTB24 WILD-TYPE" "ZBTB24 WILD-TYPE" "ZBTB24 WILD-TYPE" 
      TCGA-FB-A7DR       TCGA-H6-8124       TCGA-H6-A45N       TCGA-H8-A6C1 
"ZBTB24 WILD-TYPE" "ZBTB24 WILD-TYPE" "ZBTB24 WILD-TYPE" "ZBTB24 WILD-TYPE" 
      TCGA-IB-7644       TCGA-IB-7649       TCGA-IB-7651       TCGA-IB-7885 
"ZBTB24 WILD-TYPE" "ZBTB24 WILD-TYPE" "ZBTB24 WILD-TYPE" "ZBTB24 WILD-TYPE" 
      TCGA-IB-7886       TCGA-IB-7887       TCGA-IB-7891       TCGA-IB-8126 
"ZBTB24 WILD-TYPE" "ZBTB24 WILD-TYPE" "ZBTB24 WILD-TYPE" "ZBTB24 WILD-TYPE" 
      TCGA-IB-8127       TCGA-IB-A5SS       TCGA-IB-A6UG       TCGA-LB-A7SX 
"ZBTB24 WILD-TYPE" "ZBTB24 WILD-TYPE" "ZBTB24 WILD-TYPE" "ZBTB24 WILD-TYPE" 
      TCGA-OE-A75W 
"ZBTB24 WILD-TYPE" 
D92V10, continuous
[1] "Remove cluster labels:" "ZBTB24 MUTATED"        
clus
  ZBTB24 MUTATED ZBTB24 WILD-TYPE 
               1               18 
      TCGA-FB-A4P5       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
"ZBTB24 WILD-TYPE" "ZBTB24 WILD-TYPE" "ZBTB24 WILD-TYPE" "ZBTB24 WILD-TYPE" 
      TCGA-H6-8124       TCGA-H8-A6C1       TCGA-IB-7644       TCGA-IB-7649 
"ZBTB24 WILD-TYPE" "ZBTB24 WILD-TYPE" "ZBTB24 WILD-TYPE" "ZBTB24 WILD-TYPE" 
      TCGA-IB-7651       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7891 
"ZBTB24 WILD-TYPE" "ZBTB24 WILD-TYPE" "ZBTB24 WILD-TYPE" "ZBTB24 WILD-TYPE" 
      TCGA-IB-8126       TCGA-IB-8127       TCGA-IB-A5SS       TCGA-IB-A6UG 
"ZBTB24 WILD-TYPE" "ZBTB24 WILD-TYPE" "ZBTB24 WILD-TYPE" "ZBTB24 WILD-TYPE" 
      TCGA-LB-A7SX       TCGA-OE-A75W 
"ZBTB24 WILD-TYPE" "ZBTB24 WILD-TYPE" 
                  vv
clus               R0 R1 RX
  ZBTB24 MUTATED    2  2  0
  ZBTB24 WILD-TYPE 40 22  2
D92V11, multiclass
    clus
vv   ZBTB24 MUTATED ZBTB24 WILD-TYPE
  R0              2               40
  R1              2               22
  RX              0                2
D92V12, continuous

Clustering(93) Variable = SYT15 MUTATION ANALYSIS
D93V1, survival
                 sevent
clus2              0  1
  SYT15 MUTATED    4  6
  SYT15 WILD-TYPE 36 23
  SYT15 MUTATED SYT15 WILD-TYPE 
             10              59 
  SYT15 MUTATED SYT15 WILD-TYPE 
              6              23 
$`SYT15 MUTATED`
TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-HZ-8001 TCGA-HZ-8636 TCGA-IB-7651 
        9.70        11.84         7.10         0.62         0.16        19.82 
TCGA-IB-7886 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-8127 
        4.04        43.79        15.81        17.16 

$`SYT15 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-A44G TCGA-F2-A44H TCGA-FB-A4P5 TCGA-FB-A4P6 TCGA-FB-A545 
       10.98         5.03        19.27         0.13        11.93        12.66 
TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR TCGA-FZ-5920 TCGA-FZ-5922 TCGA-FZ-5923 
        2.47         0.03         5.46         2.01        36.20        20.81 
TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-7919 
       12.89         7.66        13.02         7.89         0.92         0.66 
TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8002 
        0.13         0.26        12.13        11.87         0.26         0.79 
TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8638 TCGA-HZ-A49G 
        0.69         3.95         0.92         0.53         2.99         0.76 
TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7646 
        0.95         6.38         1.51        11.41        49.38         4.77 
TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7887 TCGA-IB-7890 
       21.90        15.35        15.65        27.98         3.62        19.66 
TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-A5SO TCGA-IB-A5SP 
       16.04         3.85        15.98         0.56        10.82         9.86 
TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W 
        7.20        15.12         0.26         1.35         4.18         3.62 
TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
        8.12        13.68        16.80        14.14        18.67 

  SYT15 MUTATED SYT15 WILD-TYPE 
           0.16            0.03 
  SYT15 MUTATED SYT15 WILD-TYPE 
          43.79           49.38 
  SYT15 MUTATED SYT15 WILD-TYPE 
          10.77            7.20 
[1] "0.2 - 43.8 (10.8)" "0.0 - 49.4 (7.2)" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"SYT15 WILD-TYPE"   "SYT15 MUTATED"   "SYT15 MUTATED"   "SYT15 MUTATED" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"SYT15 WILD-TYPE" "SYT15 WILD-TYPE" "SYT15 WILD-TYPE" "SYT15 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"SYT15 WILD-TYPE" "SYT15 WILD-TYPE" "SYT15 WILD-TYPE" "SYT15 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"SYT15 WILD-TYPE" "SYT15 WILD-TYPE" "SYT15 WILD-TYPE" "SYT15 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"SYT15 WILD-TYPE" "SYT15 WILD-TYPE" "SYT15 WILD-TYPE" "SYT15 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"SYT15 WILD-TYPE" "SYT15 WILD-TYPE" "SYT15 WILD-TYPE" "SYT15 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"SYT15 WILD-TYPE" "SYT15 WILD-TYPE"   "SYT15 MUTATED" "SYT15 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"SYT15 WILD-TYPE" "SYT15 WILD-TYPE" "SYT15 WILD-TYPE" "SYT15 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
  "SYT15 MUTATED" "SYT15 WILD-TYPE" "SYT15 WILD-TYPE" "SYT15 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"SYT15 WILD-TYPE" "SYT15 WILD-TYPE" "SYT15 WILD-TYPE" "SYT15 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"SYT15 WILD-TYPE" "SYT15 WILD-TYPE" "SYT15 WILD-TYPE"   "SYT15 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"SYT15 WILD-TYPE" "SYT15 WILD-TYPE"   "SYT15 MUTATED" "SYT15 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
  "SYT15 MUTATED"   "SYT15 MUTATED" "SYT15 WILD-TYPE" "SYT15 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"SYT15 WILD-TYPE" "SYT15 WILD-TYPE" "SYT15 WILD-TYPE"   "SYT15 MUTATED" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"SYT15 WILD-TYPE" "SYT15 WILD-TYPE" "SYT15 WILD-TYPE" "SYT15 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"SYT15 WILD-TYPE" "SYT15 WILD-TYPE" "SYT15 WILD-TYPE" "SYT15 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"SYT15 WILD-TYPE" "SYT15 WILD-TYPE" "SYT15 WILD-TYPE" "SYT15 WILD-TYPE" 
     TCGA-US-A77J 
"SYT15 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"SYT15 WILD-TYPE"   "SYT15 MUTATED"   "SYT15 MUTATED"   "SYT15 MUTATED" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"SYT15 WILD-TYPE" "SYT15 WILD-TYPE" "SYT15 WILD-TYPE" "SYT15 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"SYT15 WILD-TYPE" "SYT15 WILD-TYPE" "SYT15 WILD-TYPE" "SYT15 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"SYT15 WILD-TYPE" "SYT15 WILD-TYPE" "SYT15 WILD-TYPE" "SYT15 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"SYT15 WILD-TYPE" "SYT15 WILD-TYPE" "SYT15 WILD-TYPE" "SYT15 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"SYT15 WILD-TYPE" "SYT15 WILD-TYPE" "SYT15 WILD-TYPE" "SYT15 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"SYT15 WILD-TYPE" "SYT15 WILD-TYPE"   "SYT15 MUTATED" "SYT15 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"SYT15 WILD-TYPE" "SYT15 WILD-TYPE" "SYT15 WILD-TYPE" "SYT15 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
  "SYT15 MUTATED" "SYT15 WILD-TYPE" "SYT15 WILD-TYPE" "SYT15 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"SYT15 WILD-TYPE" "SYT15 WILD-TYPE" "SYT15 WILD-TYPE" "SYT15 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"SYT15 WILD-TYPE" "SYT15 WILD-TYPE" "SYT15 WILD-TYPE"   "SYT15 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"SYT15 WILD-TYPE" "SYT15 WILD-TYPE"   "SYT15 MUTATED" "SYT15 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
  "SYT15 MUTATED"   "SYT15 MUTATED" "SYT15 WILD-TYPE" "SYT15 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"SYT15 WILD-TYPE" "SYT15 WILD-TYPE" "SYT15 WILD-TYPE"   "SYT15 MUTATED" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"SYT15 WILD-TYPE" "SYT15 WILD-TYPE" "SYT15 WILD-TYPE" "SYT15 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"SYT15 WILD-TYPE" "SYT15 WILD-TYPE" "SYT15 WILD-TYPE" "SYT15 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"SYT15 WILD-TYPE" "SYT15 WILD-TYPE" "SYT15 WILD-TYPE" "SYT15 WILD-TYPE" 
     TCGA-US-A77J 
"SYT15 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"SYT15 WILD-TYPE"   "SYT15 MUTATED"   "SYT15 MUTATED"   "SYT15 MUTATED" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"SYT15 WILD-TYPE" "SYT15 WILD-TYPE" "SYT15 WILD-TYPE" "SYT15 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"SYT15 WILD-TYPE" "SYT15 WILD-TYPE" "SYT15 WILD-TYPE" "SYT15 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"SYT15 WILD-TYPE" "SYT15 WILD-TYPE" "SYT15 WILD-TYPE" "SYT15 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"SYT15 WILD-TYPE" "SYT15 WILD-TYPE" "SYT15 WILD-TYPE" "SYT15 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"SYT15 WILD-TYPE" "SYT15 WILD-TYPE" "SYT15 WILD-TYPE" "SYT15 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"SYT15 WILD-TYPE" "SYT15 WILD-TYPE"   "SYT15 MUTATED" "SYT15 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"SYT15 WILD-TYPE" "SYT15 WILD-TYPE" "SYT15 WILD-TYPE" "SYT15 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
  "SYT15 MUTATED" "SYT15 WILD-TYPE" "SYT15 WILD-TYPE" "SYT15 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"SYT15 WILD-TYPE" "SYT15 WILD-TYPE" "SYT15 WILD-TYPE" "SYT15 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"SYT15 WILD-TYPE" "SYT15 WILD-TYPE" "SYT15 WILD-TYPE"   "SYT15 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"SYT15 WILD-TYPE" "SYT15 WILD-TYPE"   "SYT15 MUTATED" "SYT15 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
  "SYT15 MUTATED"   "SYT15 MUTATED" "SYT15 WILD-TYPE" "SYT15 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"SYT15 WILD-TYPE" "SYT15 WILD-TYPE" "SYT15 WILD-TYPE"   "SYT15 MUTATED" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"SYT15 WILD-TYPE" "SYT15 WILD-TYPE" "SYT15 WILD-TYPE" "SYT15 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"SYT15 WILD-TYPE" "SYT15 WILD-TYPE" "SYT15 WILD-TYPE" "SYT15 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"SYT15 WILD-TYPE" "SYT15 WILD-TYPE" "SYT15 WILD-TYPE" "SYT15 WILD-TYPE" 
     TCGA-US-A77J 
"SYT15 WILD-TYPE" 
[1] "hr=" "1"  
D93V2, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  SYT15 MUTATED          0        0         1         7         1        1
  SYT15 WILD-TYPE        1        4        10        44         1        2
D93V3, multiclass
                 vv
clus              T1+T2 T3+T4
  SYT15 MUTATED       0    10
  SYT15 WILD-TYPE     6    56
D93V4, multiclass
       clus
vv      SYT15 MUTATED SYT15 WILD-TYPE
  T1+T2             0               6
  T3+T4            10              56
D93V5, binary
                 cls
clus               0  1
  SYT15 MUTATED    3  7
  SYT15 WILD-TYPE 14 47
[1] "tbl2"
                 cls
clus              [,1] [,2]
  SYT15 MUTATED      3    7
  SYT15 WILD-TYPE   14   47
   clus
vv  SYT15 MUTATED SYT15 WILD-TYPE
  0             3              14
  1             7              47
                 vv
clus              M0 M1 MX
  SYT15 MUTATED    8  1  1
  SYT15 WILD-TYPE 31  2 29
D93V6, multiclass
    clus
vv   SYT15 MUTATED SYT15 WILD-TYPE
  M0             8              31
  M1             1               2
  MX             1              29
D93V7, binary
                 cls
clus               0  1
  SYT15 MUTATED    4  6
  SYT15 WILD-TYPE 32 30
[1] "tbl2"
                 cls
clus              [,1] [,2]
  SYT15 MUTATED      4    6
  SYT15 WILD-TYPE   32   30
        clus
vv       SYT15 MUTATED SYT15 WILD-TYPE
  FEMALE             4              32
  MALE               6              30
                 vv
clus              PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  SYT15 MUTATED                                    10
  SYT15 WILD-TYPE                                  55
                 vv
clus              PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  SYT15 MUTATED                                       0
  SYT15 WILD-TYPE                                     4
                 vv
clus              PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  SYT15 MUTATED                                                  0
  SYT15 WILD-TYPE                                                2
D93V8, multiclass
                                                  clus
vv                                                 SYT15 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                         10
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                        0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA             0
                                                  clus
vv                                                 SYT15 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                           55
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                          4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA               2
D93V9, continuous
D93V10, continuous
                 vv
clus              R0 R1 RX
  SYT15 MUTATED    6  4  0
  SYT15 WILD-TYPE 36 20  2
D93V11, multiclass
    clus
vv   SYT15 MUTATED SYT15 WILD-TYPE
  R0             6              36
  R1             4              20
  RX             0               2
D93V12, continuous

Clustering(94) Variable = SLC22A9 MUTATION ANALYSIS
D94V1, survival
                   sevent
clus2                0  1
  SLC22A9 MUTATED    7  3
  SLC22A9 WILD-TYPE 33 26
  SLC22A9 MUTATED SLC22A9 WILD-TYPE 
               10                59 
  SLC22A9 MUTATED SLC22A9 WILD-TYPE 
                3                26 
$`SLC22A9 MUTATED`
TCGA-F2-6879 TCGA-F2-A44G TCGA-FB-A4P5 TCGA-FB-A545 TCGA-HZ-7289 TCGA-HZ-7924 
       10.98         5.03         0.13        12.66         7.89        12.13 
TCGA-HZ-8003 TCGA-HZ-8315 TCGA-HZ-A49H TCGA-Q3-A5QY 
        0.69         0.92         0.95        13.68 

$`SLC22A9 WILD-TYPE`
TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44H TCGA-FB-A4P6 TCGA-FB-A5VM 
        9.70        11.84         7.10        19.27        11.93         2.47 
TCGA-FB-A78T TCGA-FB-A7DR TCGA-FZ-5920 TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 
        0.03         5.46         2.01        36.20        20.81        12.89 
TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 
        7.66        13.02         0.92         0.66         0.13         0.26 
TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8005 TCGA-HZ-8317 
       11.87         0.26         0.62         0.79         3.95         0.53 
TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 
        0.16         2.99         0.76         6.38         1.51        11.41 
TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7651 TCGA-IB-7652 
       49.38         4.77        21.90        15.35        19.82        15.65 
TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 
       27.98         4.04         3.62        43.79        15.81        19.66 
TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO 
       16.04         3.85        15.98         0.56        17.16        10.82 
TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX 
        9.86         7.20        15.12         0.26         1.35         4.18 
TCGA-OE-A75W TCGA-PZ-A5RE TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
        3.62         8.12        16.80        14.14        18.67 

  SLC22A9 MUTATED SLC22A9 WILD-TYPE 
             0.13              0.03 
  SLC22A9 MUTATED SLC22A9 WILD-TYPE 
            13.68             49.38 
  SLC22A9 MUTATED SLC22A9 WILD-TYPE 
             6.46              7.66 
[1] "0.1 - 13.7 (6.5)" "0.0 - 49.4 (7.7)"
       TCGA-F2-6879        TCGA-F2-6880        TCGA-F2-7273        TCGA-F2-7276 
  "SLC22A9 MUTATED" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" 
       TCGA-F2-A44G        TCGA-F2-A44H        TCGA-FB-A4P5        TCGA-FB-A4P6 
  "SLC22A9 MUTATED" "SLC22A9 WILD-TYPE"   "SLC22A9 MUTATED" "SLC22A9 WILD-TYPE" 
       TCGA-FB-A545        TCGA-FB-A5VM        TCGA-FB-A78T        TCGA-FB-A7DR 
  "SLC22A9 MUTATED" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" 
       TCGA-FZ-5920        TCGA-FZ-5922        TCGA-FZ-5923        TCGA-H6-8124 
"SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" 
       TCGA-H6-A45N        TCGA-H8-A6C1        TCGA-HZ-7289        TCGA-HZ-7918 
"SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE"   "SLC22A9 MUTATED" "SLC22A9 WILD-TYPE" 
       TCGA-HZ-7919        TCGA-HZ-7922        TCGA-HZ-7923        TCGA-HZ-7924 
"SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE"   "SLC22A9 MUTATED" 
       TCGA-HZ-7925        TCGA-HZ-7926        TCGA-HZ-8001        TCGA-HZ-8002 
"SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" 
       TCGA-HZ-8003        TCGA-HZ-8005        TCGA-HZ-8315        TCGA-HZ-8317 
  "SLC22A9 MUTATED" "SLC22A9 WILD-TYPE"   "SLC22A9 MUTATED" "SLC22A9 WILD-TYPE" 
       TCGA-HZ-8636        TCGA-HZ-8638        TCGA-HZ-A49G        TCGA-HZ-A49H 
"SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE"   "SLC22A9 MUTATED" 
       TCGA-HZ-A4BH        TCGA-HZ-A4BK        TCGA-IB-7644        TCGA-IB-7645 
"SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" 
       TCGA-IB-7646        TCGA-IB-7647        TCGA-IB-7649        TCGA-IB-7651 
"SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" 
       TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-7886        TCGA-IB-7887 
"SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" 
       TCGA-IB-7888        TCGA-IB-7889        TCGA-IB-7890        TCGA-IB-7891 
"SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" 
       TCGA-IB-7893        TCGA-IB-7897        TCGA-IB-8126        TCGA-IB-8127 
"SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" 
       TCGA-IB-A5SO        TCGA-IB-A5SP        TCGA-IB-A5SQ        TCGA-IB-A5SS 
"SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" 
       TCGA-IB-A5ST        TCGA-IB-A6UG        TCGA-LB-A7SX        TCGA-OE-A75W 
"SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" 
       TCGA-PZ-A5RE        TCGA-Q3-A5QY        TCGA-US-A779        TCGA-US-A77E 
"SLC22A9 WILD-TYPE"   "SLC22A9 MUTATED" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" 
       TCGA-US-A77J 
"SLC22A9 WILD-TYPE" 
       TCGA-F2-6879        TCGA-F2-6880        TCGA-F2-7273        TCGA-F2-7276 
  "SLC22A9 MUTATED" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" 
       TCGA-F2-A44G        TCGA-F2-A44H        TCGA-FB-A4P5        TCGA-FB-A4P6 
  "SLC22A9 MUTATED" "SLC22A9 WILD-TYPE"   "SLC22A9 MUTATED" "SLC22A9 WILD-TYPE" 
       TCGA-FB-A545        TCGA-FB-A5VM        TCGA-FB-A78T        TCGA-FB-A7DR 
  "SLC22A9 MUTATED" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" 
       TCGA-FZ-5920        TCGA-FZ-5922        TCGA-FZ-5923        TCGA-H6-8124 
"SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" 
       TCGA-H6-A45N        TCGA-H8-A6C1        TCGA-HZ-7289        TCGA-HZ-7918 
"SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE"   "SLC22A9 MUTATED" "SLC22A9 WILD-TYPE" 
       TCGA-HZ-7919        TCGA-HZ-7922        TCGA-HZ-7923        TCGA-HZ-7924 
"SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE"   "SLC22A9 MUTATED" 
       TCGA-HZ-7925        TCGA-HZ-7926        TCGA-HZ-8001        TCGA-HZ-8002 
"SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" 
       TCGA-HZ-8003        TCGA-HZ-8005        TCGA-HZ-8315        TCGA-HZ-8317 
  "SLC22A9 MUTATED" "SLC22A9 WILD-TYPE"   "SLC22A9 MUTATED" "SLC22A9 WILD-TYPE" 
       TCGA-HZ-8636        TCGA-HZ-8638        TCGA-HZ-A49G        TCGA-HZ-A49H 
"SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE"   "SLC22A9 MUTATED" 
       TCGA-HZ-A4BH        TCGA-HZ-A4BK        TCGA-IB-7644        TCGA-IB-7645 
"SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" 
       TCGA-IB-7646        TCGA-IB-7647        TCGA-IB-7649        TCGA-IB-7651 
"SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" 
       TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-7886        TCGA-IB-7887 
"SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" 
       TCGA-IB-7888        TCGA-IB-7889        TCGA-IB-7890        TCGA-IB-7891 
"SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" 
       TCGA-IB-7893        TCGA-IB-7897        TCGA-IB-8126        TCGA-IB-8127 
"SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" 
       TCGA-IB-A5SO        TCGA-IB-A5SP        TCGA-IB-A5SQ        TCGA-IB-A5SS 
"SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" 
       TCGA-IB-A5ST        TCGA-IB-A6UG        TCGA-LB-A7SX        TCGA-OE-A75W 
"SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" 
       TCGA-PZ-A5RE        TCGA-Q3-A5QY        TCGA-US-A779        TCGA-US-A77E 
"SLC22A9 WILD-TYPE"   "SLC22A9 MUTATED" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" 
       TCGA-US-A77J 
"SLC22A9 WILD-TYPE" 
       TCGA-F2-6879        TCGA-F2-6880        TCGA-F2-7273        TCGA-F2-7276 
  "SLC22A9 MUTATED" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" 
       TCGA-F2-A44G        TCGA-F2-A44H        TCGA-FB-A4P5        TCGA-FB-A4P6 
  "SLC22A9 MUTATED" "SLC22A9 WILD-TYPE"   "SLC22A9 MUTATED" "SLC22A9 WILD-TYPE" 
       TCGA-FB-A545        TCGA-FB-A5VM        TCGA-FB-A78T        TCGA-FB-A7DR 
  "SLC22A9 MUTATED" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" 
       TCGA-FZ-5920        TCGA-FZ-5922        TCGA-FZ-5923        TCGA-H6-8124 
"SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" 
       TCGA-H6-A45N        TCGA-H8-A6C1        TCGA-HZ-7289        TCGA-HZ-7918 
"SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE"   "SLC22A9 MUTATED" "SLC22A9 WILD-TYPE" 
       TCGA-HZ-7919        TCGA-HZ-7922        TCGA-HZ-7923        TCGA-HZ-7924 
"SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE"   "SLC22A9 MUTATED" 
       TCGA-HZ-7925        TCGA-HZ-7926        TCGA-HZ-8001        TCGA-HZ-8002 
"SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" 
       TCGA-HZ-8003        TCGA-HZ-8005        TCGA-HZ-8315        TCGA-HZ-8317 
  "SLC22A9 MUTATED" "SLC22A9 WILD-TYPE"   "SLC22A9 MUTATED" "SLC22A9 WILD-TYPE" 
       TCGA-HZ-8636        TCGA-HZ-8638        TCGA-HZ-A49G        TCGA-HZ-A49H 
"SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE"   "SLC22A9 MUTATED" 
       TCGA-HZ-A4BH        TCGA-HZ-A4BK        TCGA-IB-7644        TCGA-IB-7645 
"SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" 
       TCGA-IB-7646        TCGA-IB-7647        TCGA-IB-7649        TCGA-IB-7651 
"SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" 
       TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-7886        TCGA-IB-7887 
"SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" 
       TCGA-IB-7888        TCGA-IB-7889        TCGA-IB-7890        TCGA-IB-7891 
"SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" 
       TCGA-IB-7893        TCGA-IB-7897        TCGA-IB-8126        TCGA-IB-8127 
"SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" 
       TCGA-IB-A5SO        TCGA-IB-A5SP        TCGA-IB-A5SQ        TCGA-IB-A5SS 
"SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" 
       TCGA-IB-A5ST        TCGA-IB-A6UG        TCGA-LB-A7SX        TCGA-OE-A75W 
"SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" 
       TCGA-PZ-A5RE        TCGA-Q3-A5QY        TCGA-US-A779        TCGA-US-A77E 
"SLC22A9 WILD-TYPE"   "SLC22A9 MUTATED" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" 
       TCGA-US-A77J 
"SLC22A9 WILD-TYPE" 
[1] "hr=" "1.6"
D94V2, continuous
                   vv
clus                STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  SLC22A9 MUTATED          0        0         2         8         0        0
  SLC22A9 WILD-TYPE        1        4         9        43         2        3
D94V3, multiclass
                   vv
clus                T1+T2 T3+T4
  SLC22A9 MUTATED       0    10
  SLC22A9 WILD-TYPE     6    56
D94V4, multiclass
       clus
vv      SLC22A9 MUTATED SLC22A9 WILD-TYPE
  T1+T2               0                 6
  T3+T4              10                56
D94V5, binary
                   cls
clus                 0  1
  SLC22A9 MUTATED    2  8
  SLC22A9 WILD-TYPE 15 46
[1] "tbl2"
                   cls
clus                [,1] [,2]
  SLC22A9 MUTATED      2    8
  SLC22A9 WILD-TYPE   15   46
   clus
vv  SLC22A9 MUTATED SLC22A9 WILD-TYPE
  0               2                15
  1               8                46
                   vv
clus                M0 M1 MX
  SLC22A9 MUTATED    3  0  7
  SLC22A9 WILD-TYPE 36  3 23
D94V6, multiclass
    clus
vv   SLC22A9 MUTATED SLC22A9 WILD-TYPE
  M0               3                36
  M1               0                 3
  MX               7                23
D94V7, binary
                   cls
clus                 0  1
  SLC22A9 MUTATED    7  3
  SLC22A9 WILD-TYPE 29 33
[1] "tbl2"
                   cls
clus                [,1] [,2]
  SLC22A9 MUTATED      7    3
  SLC22A9 WILD-TYPE   29   33
        clus
vv       SLC22A9 MUTATED SLC22A9 WILD-TYPE
  FEMALE               7                29
  MALE                 3                33
                   vv
clus                PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  SLC22A9 MUTATED                                     8
  SLC22A9 WILD-TYPE                                  57
                   vv
clus                PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  SLC22A9 MUTATED                                       1
  SLC22A9 WILD-TYPE                                     3
                   vv
clus                PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  SLC22A9 MUTATED                                                  0
  SLC22A9 WILD-TYPE                                                2
D94V8, multiclass
                                                  clus
vv                                                 SLC22A9 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                            8
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                          1
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA               0
                                                  clus
vv                                                 SLC22A9 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                             57
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                            3
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                 2
D94V9, continuous
[1] "Remove cluster labels:" "SLC22A9 MUTATED"       
clus
  SLC22A9 MUTATED SLC22A9 WILD-TYPE 
                1                21 
       TCGA-F2-6880        TCGA-FB-A4P6        TCGA-FB-A5VM        TCGA-FB-A78T 
"SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" 
       TCGA-FB-A7DR        TCGA-H6-8124        TCGA-H6-A45N        TCGA-H8-A6C1 
"SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" 
       TCGA-IB-7644        TCGA-IB-7649        TCGA-IB-7651        TCGA-IB-7885 
"SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" 
       TCGA-IB-7886        TCGA-IB-7887        TCGA-IB-7891        TCGA-IB-8126 
"SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" 
       TCGA-IB-8127        TCGA-IB-A5SS        TCGA-IB-A6UG        TCGA-LB-A7SX 
"SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" 
       TCGA-OE-A75W 
"SLC22A9 WILD-TYPE" 
D94V10, continuous
[1] "Remove cluster labels:" "SLC22A9 MUTATED"       
clus
  SLC22A9 MUTATED SLC22A9 WILD-TYPE 
                1                18 
       TCGA-FB-A4P6        TCGA-FB-A5VM        TCGA-FB-A78T        TCGA-FB-A7DR 
"SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" 
       TCGA-H6-8124        TCGA-H8-A6C1        TCGA-IB-7644        TCGA-IB-7649 
"SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" 
       TCGA-IB-7651        TCGA-IB-7885        TCGA-IB-7886        TCGA-IB-7891 
"SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" 
       TCGA-IB-8126        TCGA-IB-8127        TCGA-IB-A5SS        TCGA-IB-A6UG 
"SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" 
       TCGA-LB-A7SX        TCGA-OE-A75W 
"SLC22A9 WILD-TYPE" "SLC22A9 WILD-TYPE" 
                   vv
clus                R0 R1 RX
  SLC22A9 MUTATED    6  2  1
  SLC22A9 WILD-TYPE 36 22  1
D94V11, multiclass
    clus
vv   SLC22A9 MUTATED SLC22A9 WILD-TYPE
  R0               6                36
  R1               2                22
  RX               1                 1
D94V12, continuous

Clustering(95) Variable = SRP14 MUTATION ANALYSIS
D95V1, survival
                 sevent
clus2              0  1
  SRP14 MUTATED    5  8
  SRP14 WILD-TYPE 35 21
  SRP14 MUTATED SRP14 WILD-TYPE 
             13              56 
  SRP14 MUTATED SRP14 WILD-TYPE 
              8              21 
$`SRP14 MUTATED`
TCGA-F2-6880 TCGA-F2-7276 TCGA-HZ-7922 TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-8317 
        9.70         7.10         0.13        12.13        11.87         0.53 
TCGA-IB-7644 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7889 
       11.41         4.77        21.90         4.04         3.62        15.81 
TCGA-IB-A6UG 
        1.35 

$`SRP14 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-7273 TCGA-F2-A44G TCGA-F2-A44H TCGA-FB-A4P5 TCGA-FB-A4P6 
       10.98        11.84         5.03        19.27         0.13        11.93 
TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR TCGA-FZ-5920 TCGA-FZ-5922 
       12.66         2.47         0.03         5.46         2.01        36.20 
TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7289 TCGA-HZ-7918 
       20.81        12.89         7.66        13.02         7.89         0.92 
TCGA-HZ-7919 TCGA-HZ-7923 TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 
        0.66         0.26         0.26         0.62         0.79         0.69 
TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H 
        3.95         0.92         0.16         2.99         0.76         0.95 
TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7645 TCGA-IB-7649 TCGA-IB-7651 TCGA-IB-7652 
        6.38         1.51        49.38        15.35        19.82        15.65 
TCGA-IB-7885 TCGA-IB-7888 TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-7897 
       27.98        43.79        19.66        16.04         3.85        15.98 
TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS 
        0.56        17.16        10.82         9.86         7.20        15.12 
TCGA-IB-A5ST TCGA-LB-A7SX TCGA-OE-A75W TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 
        0.26         4.18         3.62         8.12        13.68        16.80 
TCGA-US-A77E TCGA-US-A77J 
       14.14        18.67 

  SRP14 MUTATED SRP14 WILD-TYPE 
           0.13            0.03 
  SRP14 MUTATED SRP14 WILD-TYPE 
          21.90           49.38 
  SRP14 MUTATED SRP14 WILD-TYPE 
          7.100           7.775 
[1] "0.1 - 21.9 (7.1)" "0.0 - 49.4 (7.8)"
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"SRP14 WILD-TYPE"   "SRP14 MUTATED" "SRP14 WILD-TYPE"   "SRP14 MUTATED" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"SRP14 WILD-TYPE" "SRP14 WILD-TYPE" "SRP14 WILD-TYPE" "SRP14 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"SRP14 WILD-TYPE" "SRP14 WILD-TYPE" "SRP14 WILD-TYPE" "SRP14 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"SRP14 WILD-TYPE" "SRP14 WILD-TYPE" "SRP14 WILD-TYPE" "SRP14 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"SRP14 WILD-TYPE" "SRP14 WILD-TYPE" "SRP14 WILD-TYPE" "SRP14 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"SRP14 WILD-TYPE"   "SRP14 MUTATED" "SRP14 WILD-TYPE"   "SRP14 MUTATED" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
  "SRP14 MUTATED" "SRP14 WILD-TYPE" "SRP14 WILD-TYPE" "SRP14 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"SRP14 WILD-TYPE" "SRP14 WILD-TYPE" "SRP14 WILD-TYPE"   "SRP14 MUTATED" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"SRP14 WILD-TYPE" "SRP14 WILD-TYPE" "SRP14 WILD-TYPE" "SRP14 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"SRP14 WILD-TYPE" "SRP14 WILD-TYPE"   "SRP14 MUTATED" "SRP14 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
  "SRP14 MUTATED"   "SRP14 MUTATED" "SRP14 WILD-TYPE" "SRP14 WILD-TYPE" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"SRP14 WILD-TYPE" "SRP14 WILD-TYPE"   "SRP14 MUTATED"   "SRP14 MUTATED" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"SRP14 WILD-TYPE"   "SRP14 MUTATED" "SRP14 WILD-TYPE" "SRP14 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"SRP14 WILD-TYPE" "SRP14 WILD-TYPE" "SRP14 WILD-TYPE" "SRP14 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"SRP14 WILD-TYPE" "SRP14 WILD-TYPE" "SRP14 WILD-TYPE" "SRP14 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"SRP14 WILD-TYPE"   "SRP14 MUTATED" "SRP14 WILD-TYPE" "SRP14 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"SRP14 WILD-TYPE" "SRP14 WILD-TYPE" "SRP14 WILD-TYPE" "SRP14 WILD-TYPE" 
     TCGA-US-A77J 
"SRP14 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"SRP14 WILD-TYPE"   "SRP14 MUTATED" "SRP14 WILD-TYPE"   "SRP14 MUTATED" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"SRP14 WILD-TYPE" "SRP14 WILD-TYPE" "SRP14 WILD-TYPE" "SRP14 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"SRP14 WILD-TYPE" "SRP14 WILD-TYPE" "SRP14 WILD-TYPE" "SRP14 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"SRP14 WILD-TYPE" "SRP14 WILD-TYPE" "SRP14 WILD-TYPE" "SRP14 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"SRP14 WILD-TYPE" "SRP14 WILD-TYPE" "SRP14 WILD-TYPE" "SRP14 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"SRP14 WILD-TYPE"   "SRP14 MUTATED" "SRP14 WILD-TYPE"   "SRP14 MUTATED" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
  "SRP14 MUTATED" "SRP14 WILD-TYPE" "SRP14 WILD-TYPE" "SRP14 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"SRP14 WILD-TYPE" "SRP14 WILD-TYPE" "SRP14 WILD-TYPE"   "SRP14 MUTATED" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"SRP14 WILD-TYPE" "SRP14 WILD-TYPE" "SRP14 WILD-TYPE" "SRP14 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"SRP14 WILD-TYPE" "SRP14 WILD-TYPE"   "SRP14 MUTATED" "SRP14 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
  "SRP14 MUTATED"   "SRP14 MUTATED" "SRP14 WILD-TYPE" "SRP14 WILD-TYPE" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"SRP14 WILD-TYPE" "SRP14 WILD-TYPE"   "SRP14 MUTATED"   "SRP14 MUTATED" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"SRP14 WILD-TYPE"   "SRP14 MUTATED" "SRP14 WILD-TYPE" "SRP14 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"SRP14 WILD-TYPE" "SRP14 WILD-TYPE" "SRP14 WILD-TYPE" "SRP14 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"SRP14 WILD-TYPE" "SRP14 WILD-TYPE" "SRP14 WILD-TYPE" "SRP14 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"SRP14 WILD-TYPE"   "SRP14 MUTATED" "SRP14 WILD-TYPE" "SRP14 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"SRP14 WILD-TYPE" "SRP14 WILD-TYPE" "SRP14 WILD-TYPE" "SRP14 WILD-TYPE" 
     TCGA-US-A77J 
"SRP14 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"SRP14 WILD-TYPE"   "SRP14 MUTATED" "SRP14 WILD-TYPE"   "SRP14 MUTATED" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"SRP14 WILD-TYPE" "SRP14 WILD-TYPE" "SRP14 WILD-TYPE" "SRP14 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"SRP14 WILD-TYPE" "SRP14 WILD-TYPE" "SRP14 WILD-TYPE" "SRP14 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"SRP14 WILD-TYPE" "SRP14 WILD-TYPE" "SRP14 WILD-TYPE" "SRP14 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"SRP14 WILD-TYPE" "SRP14 WILD-TYPE" "SRP14 WILD-TYPE" "SRP14 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"SRP14 WILD-TYPE"   "SRP14 MUTATED" "SRP14 WILD-TYPE"   "SRP14 MUTATED" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
  "SRP14 MUTATED" "SRP14 WILD-TYPE" "SRP14 WILD-TYPE" "SRP14 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"SRP14 WILD-TYPE" "SRP14 WILD-TYPE" "SRP14 WILD-TYPE"   "SRP14 MUTATED" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"SRP14 WILD-TYPE" "SRP14 WILD-TYPE" "SRP14 WILD-TYPE" "SRP14 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"SRP14 WILD-TYPE" "SRP14 WILD-TYPE"   "SRP14 MUTATED" "SRP14 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
  "SRP14 MUTATED"   "SRP14 MUTATED" "SRP14 WILD-TYPE" "SRP14 WILD-TYPE" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"SRP14 WILD-TYPE" "SRP14 WILD-TYPE"   "SRP14 MUTATED"   "SRP14 MUTATED" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"SRP14 WILD-TYPE"   "SRP14 MUTATED" "SRP14 WILD-TYPE" "SRP14 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"SRP14 WILD-TYPE" "SRP14 WILD-TYPE" "SRP14 WILD-TYPE" "SRP14 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"SRP14 WILD-TYPE" "SRP14 WILD-TYPE" "SRP14 WILD-TYPE" "SRP14 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"SRP14 WILD-TYPE"   "SRP14 MUTATED" "SRP14 WILD-TYPE" "SRP14 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"SRP14 WILD-TYPE" "SRP14 WILD-TYPE" "SRP14 WILD-TYPE" "SRP14 WILD-TYPE" 
     TCGA-US-A77J 
"SRP14 WILD-TYPE" 
[1] "hr=" "2.4"
D95V2, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  SRP14 MUTATED          0        0         1        11         0        1
  SRP14 WILD-TYPE        1        4        10        40         2        2
D95V3, multiclass
                 vv
clus              T1+T2 T3+T4
  SRP14 MUTATED       0    13
  SRP14 WILD-TYPE     6    53
D95V4, multiclass
       clus
vv      SRP14 MUTATED SRP14 WILD-TYPE
  T1+T2             0               6
  T3+T4            13              53
D95V5, binary
                 cls
clus               0  1
  SRP14 MUTATED    1 12
  SRP14 WILD-TYPE 16 42
[1] "tbl2"
                 cls
clus              [,1] [,2]
  SRP14 MUTATED      1   12
  SRP14 WILD-TYPE   16   42
   clus
vv  SRP14 MUTATED SRP14 WILD-TYPE
  0             1              16
  1            12              42
                 vv
clus              M0 M1 MX
  SRP14 MUTATED    8  1  4
  SRP14 WILD-TYPE 31  2 26
D95V6, multiclass
    clus
vv   SRP14 MUTATED SRP14 WILD-TYPE
  M0             8              31
  M1             1               2
  MX             4              26
D95V7, binary
                 cls
clus               0  1
  SRP14 MUTATED    7  6
  SRP14 WILD-TYPE 29 30
[1] "tbl2"
                 cls
clus              [,1] [,2]
  SRP14 MUTATED      7    6
  SRP14 WILD-TYPE   29   30
        clus
vv       SRP14 MUTATED SRP14 WILD-TYPE
  FEMALE             7              29
  MALE               6              30
                 vv
clus              PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  SRP14 MUTATED                                    13
  SRP14 WILD-TYPE                                  52
                 vv
clus              PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  SRP14 MUTATED                                       0
  SRP14 WILD-TYPE                                     4
                 vv
clus              PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  SRP14 MUTATED                                                  0
  SRP14 WILD-TYPE                                                2
D95V8, multiclass
                                                  clus
vv                                                 SRP14 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                         13
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                        0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA             0
                                                  clus
vv                                                 SRP14 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                           52
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                          4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA               2
D95V9, continuous
D95V10, continuous
                 vv
clus              R0 R1 RX
  SRP14 MUTATED    6  7  0
  SRP14 WILD-TYPE 36 17  2
D95V11, multiclass
    clus
vv   SRP14 MUTATED SRP14 WILD-TYPE
  R0             6              36
  R1             7              17
  RX             0               2
D95V12, continuous

Clustering(96) Variable = DIAPH3 MUTATION ANALYSIS
D96V1, survival
                  sevent
clus2               0  1
  DIAPH3 MUTATED    5  4
  DIAPH3 WILD-TYPE 35 25
  DIAPH3 MUTATED DIAPH3 WILD-TYPE 
               9               60 
  DIAPH3 MUTATED DIAPH3 WILD-TYPE 
               4               25 
$`DIAPH3 MUTATED`
TCGA-F2-6880 TCGA-F2-7276 TCGA-H6-8124 TCGA-H6-A45N TCGA-HZ-7919 TCGA-HZ-A4BH 
        9.70         7.10        12.89         7.66         0.66         6.38 
TCGA-IB-7651 TCGA-IB-7888 TCGA-IB-A5SO 
       19.82        43.79        10.82 

$`DIAPH3 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-7273 TCGA-F2-A44G TCGA-F2-A44H TCGA-FB-A4P5 TCGA-FB-A4P6 
       10.98        11.84         5.03        19.27         0.13        11.93 
TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR TCGA-FZ-5920 TCGA-FZ-5922 
       12.66         2.47         0.03         5.46         2.01        36.20 
TCGA-FZ-5923 TCGA-H8-A6C1 TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-7922 TCGA-HZ-7923 
       20.81        13.02         7.89         0.92         0.13         0.26 
TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 
       12.13        11.87         0.26         0.62         0.79         0.69 
TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G 
        3.95         0.92         0.53         0.16         2.99         0.76 
TCGA-HZ-A49H TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 
        0.95         1.51        11.41        49.38         4.77        21.90 
TCGA-IB-7649 TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7889 
       15.35        15.65        27.98         4.04         3.62        15.81 
TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-8127 
       19.66        16.04         3.85        15.98         0.56        17.16 
TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX 
        9.86         7.20        15.12         0.26         1.35         4.18 
TCGA-OE-A75W TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
        3.62         8.12        13.68        16.80        14.14        18.67 

  DIAPH3 MUTATED DIAPH3 WILD-TYPE 
            0.66             0.03 
  DIAPH3 MUTATED DIAPH3 WILD-TYPE 
           43.79            49.38 
  DIAPH3 MUTATED DIAPH3 WILD-TYPE 
            9.70             6.33 
[1] "0.7 - 43.8 (9.7)" "0.0 - 49.4 (6.3)"
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
"DIAPH3 WILD-TYPE"   "DIAPH3 MUTATED" "DIAPH3 WILD-TYPE"   "DIAPH3 MUTATED" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"DIAPH3 WILD-TYPE" "DIAPH3 WILD-TYPE" "DIAPH3 WILD-TYPE" "DIAPH3 WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
"DIAPH3 WILD-TYPE" "DIAPH3 WILD-TYPE" "DIAPH3 WILD-TYPE" "DIAPH3 WILD-TYPE" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"DIAPH3 WILD-TYPE" "DIAPH3 WILD-TYPE" "DIAPH3 WILD-TYPE"   "DIAPH3 MUTATED" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
  "DIAPH3 MUTATED" "DIAPH3 WILD-TYPE" "DIAPH3 WILD-TYPE" "DIAPH3 WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
  "DIAPH3 MUTATED" "DIAPH3 WILD-TYPE" "DIAPH3 WILD-TYPE" "DIAPH3 WILD-TYPE" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"DIAPH3 WILD-TYPE" "DIAPH3 WILD-TYPE" "DIAPH3 WILD-TYPE" "DIAPH3 WILD-TYPE" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
"DIAPH3 WILD-TYPE" "DIAPH3 WILD-TYPE" "DIAPH3 WILD-TYPE" "DIAPH3 WILD-TYPE" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
"DIAPH3 WILD-TYPE" "DIAPH3 WILD-TYPE" "DIAPH3 WILD-TYPE" "DIAPH3 WILD-TYPE" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
  "DIAPH3 MUTATED" "DIAPH3 WILD-TYPE" "DIAPH3 WILD-TYPE" "DIAPH3 WILD-TYPE" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
"DIAPH3 WILD-TYPE" "DIAPH3 WILD-TYPE" "DIAPH3 WILD-TYPE"   "DIAPH3 MUTATED" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
"DIAPH3 WILD-TYPE" "DIAPH3 WILD-TYPE" "DIAPH3 WILD-TYPE" "DIAPH3 WILD-TYPE" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
  "DIAPH3 MUTATED" "DIAPH3 WILD-TYPE" "DIAPH3 WILD-TYPE" "DIAPH3 WILD-TYPE" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
"DIAPH3 WILD-TYPE" "DIAPH3 WILD-TYPE" "DIAPH3 WILD-TYPE" "DIAPH3 WILD-TYPE" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
  "DIAPH3 MUTATED" "DIAPH3 WILD-TYPE" "DIAPH3 WILD-TYPE" "DIAPH3 WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"DIAPH3 WILD-TYPE" "DIAPH3 WILD-TYPE" "DIAPH3 WILD-TYPE" "DIAPH3 WILD-TYPE" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
"DIAPH3 WILD-TYPE" "DIAPH3 WILD-TYPE" "DIAPH3 WILD-TYPE" "DIAPH3 WILD-TYPE" 
      TCGA-US-A77J 
"DIAPH3 WILD-TYPE" 
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
"DIAPH3 WILD-TYPE"   "DIAPH3 MUTATED" "DIAPH3 WILD-TYPE"   "DIAPH3 MUTATED" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"DIAPH3 WILD-TYPE" "DIAPH3 WILD-TYPE" "DIAPH3 WILD-TYPE" "DIAPH3 WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
"DIAPH3 WILD-TYPE" "DIAPH3 WILD-TYPE" "DIAPH3 WILD-TYPE" "DIAPH3 WILD-TYPE" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"DIAPH3 WILD-TYPE" "DIAPH3 WILD-TYPE" "DIAPH3 WILD-TYPE"   "DIAPH3 MUTATED" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
  "DIAPH3 MUTATED" "DIAPH3 WILD-TYPE" "DIAPH3 WILD-TYPE" "DIAPH3 WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
  "DIAPH3 MUTATED" "DIAPH3 WILD-TYPE" "DIAPH3 WILD-TYPE" "DIAPH3 WILD-TYPE" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"DIAPH3 WILD-TYPE" "DIAPH3 WILD-TYPE" "DIAPH3 WILD-TYPE" "DIAPH3 WILD-TYPE" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
"DIAPH3 WILD-TYPE" "DIAPH3 WILD-TYPE" "DIAPH3 WILD-TYPE" "DIAPH3 WILD-TYPE" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
"DIAPH3 WILD-TYPE" "DIAPH3 WILD-TYPE" "DIAPH3 WILD-TYPE" "DIAPH3 WILD-TYPE" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
  "DIAPH3 MUTATED" "DIAPH3 WILD-TYPE" "DIAPH3 WILD-TYPE" "DIAPH3 WILD-TYPE" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
"DIAPH3 WILD-TYPE" "DIAPH3 WILD-TYPE" "DIAPH3 WILD-TYPE"   "DIAPH3 MUTATED" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
"DIAPH3 WILD-TYPE" "DIAPH3 WILD-TYPE" "DIAPH3 WILD-TYPE" "DIAPH3 WILD-TYPE" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
  "DIAPH3 MUTATED" "DIAPH3 WILD-TYPE" "DIAPH3 WILD-TYPE" "DIAPH3 WILD-TYPE" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
"DIAPH3 WILD-TYPE" "DIAPH3 WILD-TYPE" "DIAPH3 WILD-TYPE" "DIAPH3 WILD-TYPE" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
  "DIAPH3 MUTATED" "DIAPH3 WILD-TYPE" "DIAPH3 WILD-TYPE" "DIAPH3 WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"DIAPH3 WILD-TYPE" "DIAPH3 WILD-TYPE" "DIAPH3 WILD-TYPE" "DIAPH3 WILD-TYPE" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
"DIAPH3 WILD-TYPE" "DIAPH3 WILD-TYPE" "DIAPH3 WILD-TYPE" "DIAPH3 WILD-TYPE" 
      TCGA-US-A77J 
"DIAPH3 WILD-TYPE" 
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
"DIAPH3 WILD-TYPE"   "DIAPH3 MUTATED" "DIAPH3 WILD-TYPE"   "DIAPH3 MUTATED" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"DIAPH3 WILD-TYPE" "DIAPH3 WILD-TYPE" "DIAPH3 WILD-TYPE" "DIAPH3 WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
"DIAPH3 WILD-TYPE" "DIAPH3 WILD-TYPE" "DIAPH3 WILD-TYPE" "DIAPH3 WILD-TYPE" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"DIAPH3 WILD-TYPE" "DIAPH3 WILD-TYPE" "DIAPH3 WILD-TYPE"   "DIAPH3 MUTATED" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
  "DIAPH3 MUTATED" "DIAPH3 WILD-TYPE" "DIAPH3 WILD-TYPE" "DIAPH3 WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
  "DIAPH3 MUTATED" "DIAPH3 WILD-TYPE" "DIAPH3 WILD-TYPE" "DIAPH3 WILD-TYPE" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"DIAPH3 WILD-TYPE" "DIAPH3 WILD-TYPE" "DIAPH3 WILD-TYPE" "DIAPH3 WILD-TYPE" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
"DIAPH3 WILD-TYPE" "DIAPH3 WILD-TYPE" "DIAPH3 WILD-TYPE" "DIAPH3 WILD-TYPE" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
"DIAPH3 WILD-TYPE" "DIAPH3 WILD-TYPE" "DIAPH3 WILD-TYPE" "DIAPH3 WILD-TYPE" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
  "DIAPH3 MUTATED" "DIAPH3 WILD-TYPE" "DIAPH3 WILD-TYPE" "DIAPH3 WILD-TYPE" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
"DIAPH3 WILD-TYPE" "DIAPH3 WILD-TYPE" "DIAPH3 WILD-TYPE"   "DIAPH3 MUTATED" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
"DIAPH3 WILD-TYPE" "DIAPH3 WILD-TYPE" "DIAPH3 WILD-TYPE" "DIAPH3 WILD-TYPE" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
  "DIAPH3 MUTATED" "DIAPH3 WILD-TYPE" "DIAPH3 WILD-TYPE" "DIAPH3 WILD-TYPE" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
"DIAPH3 WILD-TYPE" "DIAPH3 WILD-TYPE" "DIAPH3 WILD-TYPE" "DIAPH3 WILD-TYPE" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
  "DIAPH3 MUTATED" "DIAPH3 WILD-TYPE" "DIAPH3 WILD-TYPE" "DIAPH3 WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"DIAPH3 WILD-TYPE" "DIAPH3 WILD-TYPE" "DIAPH3 WILD-TYPE" "DIAPH3 WILD-TYPE" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
"DIAPH3 WILD-TYPE" "DIAPH3 WILD-TYPE" "DIAPH3 WILD-TYPE" "DIAPH3 WILD-TYPE" 
      TCGA-US-A77J 
"DIAPH3 WILD-TYPE" 
[1] "hr=" "1.4"
D96V2, continuous
                  vv
clus               STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  DIAPH3 MUTATED          0        0         1         8         0        0
  DIAPH3 WILD-TYPE        1        4        10        43         2        3
D96V3, multiclass
                  vv
clus               T1+T2 T3+T4
  DIAPH3 MUTATED       0     9
  DIAPH3 WILD-TYPE     6    57
D96V4, multiclass
       clus
vv      DIAPH3 MUTATED DIAPH3 WILD-TYPE
  T1+T2              0                6
  T3+T4              9               57
D96V5, binary
                  cls
clus                0  1
  DIAPH3 MUTATED    1  8
  DIAPH3 WILD-TYPE 16 46
[1] "tbl2"
                  cls
clus               [,1] [,2]
  DIAPH3 MUTATED      1    8
  DIAPH3 WILD-TYPE   16   46
   clus
vv  DIAPH3 MUTATED DIAPH3 WILD-TYPE
  0              1               16
  1              8               46
                  vv
clus               M0 M1 MX
  DIAPH3 MUTATED    7  0  2
  DIAPH3 WILD-TYPE 32  3 28
D96V6, multiclass
    clus
vv   DIAPH3 MUTATED DIAPH3 WILD-TYPE
  M0              7               32
  M1              0                3
  MX              2               28
D96V7, binary
                  cls
clus                0  1
  DIAPH3 MUTATED    5  4
  DIAPH3 WILD-TYPE 31 32
[1] "tbl2"
                  cls
clus               [,1] [,2]
  DIAPH3 MUTATED      5    4
  DIAPH3 WILD-TYPE   31   32
        clus
vv       DIAPH3 MUTATED DIAPH3 WILD-TYPE
  FEMALE              5               31
  MALE                4               32
                  vv
clus               PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  DIAPH3 MUTATED                                     8
  DIAPH3 WILD-TYPE                                  57
                  vv
clus               PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  DIAPH3 MUTATED                                       1
  DIAPH3 WILD-TYPE                                     3
                  vv
clus               PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  DIAPH3 MUTATED                                                  0
  DIAPH3 WILD-TYPE                                                2
D96V8, multiclass
                                                  clus
vv                                                 DIAPH3 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                           8
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                         1
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA              0
                                                  clus
vv                                                 DIAPH3 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                            57
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                           3
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                2
D96V9, continuous
D96V10, continuous
[1] "Remove cluster labels:" "DIAPH3 MUTATED"        
clus
  DIAPH3 MUTATED DIAPH3 WILD-TYPE 
               2               17 
      TCGA-FB-A4P5       TCGA-FB-A4P6       TCGA-FB-A5VM       TCGA-FB-A78T 
"DIAPH3 WILD-TYPE" "DIAPH3 WILD-TYPE" "DIAPH3 WILD-TYPE" "DIAPH3 WILD-TYPE" 
      TCGA-FB-A7DR       TCGA-H8-A6C1       TCGA-IB-7644       TCGA-IB-7649 
"DIAPH3 WILD-TYPE" "DIAPH3 WILD-TYPE" "DIAPH3 WILD-TYPE" "DIAPH3 WILD-TYPE" 
      TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7891       TCGA-IB-8126 
"DIAPH3 WILD-TYPE" "DIAPH3 WILD-TYPE" "DIAPH3 WILD-TYPE" "DIAPH3 WILD-TYPE" 
      TCGA-IB-8127       TCGA-IB-A5SS       TCGA-IB-A6UG       TCGA-LB-A7SX 
"DIAPH3 WILD-TYPE" "DIAPH3 WILD-TYPE" "DIAPH3 WILD-TYPE" "DIAPH3 WILD-TYPE" 
      TCGA-OE-A75W 
"DIAPH3 WILD-TYPE" 
                  vv
clus               R0 R1 RX
  DIAPH3 MUTATED    6  2  0
  DIAPH3 WILD-TYPE 36 22  2
D96V11, multiclass
    clus
vv   DIAPH3 MUTATED DIAPH3 WILD-TYPE
  R0              6               36
  R1              2               22
  RX              0                2
D96V12, continuous

Clustering(97) Variable = WRN MUTATION ANALYSIS
D97V1, survival
               sevent
clus2            0  1
  WRN MUTATED    7  3
  WRN WILD-TYPE 33 26
  WRN MUTATED WRN WILD-TYPE 
           10            59 
  WRN MUTATED WRN WILD-TYPE 
            3            26 
$`WRN MUTATED`
TCGA-F2-A44H TCGA-FB-A4P5 TCGA-FB-A545 TCGA-H6-8124 TCGA-H8-A6C1 TCGA-HZ-8002 
       19.27         0.13        12.66        12.89        13.02         0.79 
TCGA-HZ-8317 TCGA-IB-7888 TCGA-IB-7891 TCGA-IB-7893 
        0.53        43.79        16.04         3.85 

$`WRN WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-FB-A4P6 
       10.98         9.70        11.84         7.10         5.03        11.93 
TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR TCGA-FZ-5920 TCGA-FZ-5922 TCGA-FZ-5923 
        2.47         0.03         5.46         2.01        36.20        20.81 
TCGA-H6-A45N TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 
        7.66         7.89         0.92         0.66         0.13         0.26 
TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8003 TCGA-HZ-8005 
       12.13        11.87         0.26         0.62         0.69         3.95 
TCGA-HZ-8315 TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH 
        0.92         0.16         2.99         0.76         0.95         6.38 
TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 
        1.51        11.41        49.38         4.77        21.90        15.35 
TCGA-IB-7651 TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7889 
       19.82        15.65        27.98         4.04         3.62        15.81 
TCGA-IB-7890 TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP 
       19.66        15.98         0.56        17.16        10.82         9.86 
TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W 
        7.20        15.12         0.26         1.35         4.18         3.62 
TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
        8.12        13.68        16.80        14.14        18.67 

  WRN MUTATED WRN WILD-TYPE 
         0.13          0.03 
  WRN MUTATED WRN WILD-TYPE 
        43.79         49.38 
  WRN MUTATED WRN WILD-TYPE 
       12.775         7.200 
[1] "0.1 - 43.8 (12.8)" "0.0 - 49.4 (7.2)" 
   TCGA-F2-6879    TCGA-F2-6880    TCGA-F2-7273    TCGA-F2-7276    TCGA-F2-A44G 
"WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" 
   TCGA-F2-A44H    TCGA-FB-A4P5    TCGA-FB-A4P6    TCGA-FB-A545    TCGA-FB-A5VM 
  "WRN MUTATED"   "WRN MUTATED" "WRN WILD-TYPE"   "WRN MUTATED" "WRN WILD-TYPE" 
   TCGA-FB-A78T    TCGA-FB-A7DR    TCGA-FZ-5920    TCGA-FZ-5922    TCGA-FZ-5923 
"WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" 
   TCGA-H6-8124    TCGA-H6-A45N    TCGA-H8-A6C1    TCGA-HZ-7289    TCGA-HZ-7918 
  "WRN MUTATED" "WRN WILD-TYPE"   "WRN MUTATED" "WRN WILD-TYPE" "WRN WILD-TYPE" 
   TCGA-HZ-7919    TCGA-HZ-7922    TCGA-HZ-7923    TCGA-HZ-7924    TCGA-HZ-7925 
"WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" 
   TCGA-HZ-7926    TCGA-HZ-8001    TCGA-HZ-8002    TCGA-HZ-8003    TCGA-HZ-8005 
"WRN WILD-TYPE" "WRN WILD-TYPE"   "WRN MUTATED" "WRN WILD-TYPE" "WRN WILD-TYPE" 
   TCGA-HZ-8315    TCGA-HZ-8317    TCGA-HZ-8636    TCGA-HZ-8638    TCGA-HZ-A49G 
"WRN WILD-TYPE"   "WRN MUTATED" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" 
   TCGA-HZ-A49H    TCGA-HZ-A4BH    TCGA-HZ-A4BK    TCGA-IB-7644    TCGA-IB-7645 
"WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" 
   TCGA-IB-7646    TCGA-IB-7647    TCGA-IB-7649    TCGA-IB-7651    TCGA-IB-7652 
"WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" 
   TCGA-IB-7885    TCGA-IB-7886    TCGA-IB-7887    TCGA-IB-7888    TCGA-IB-7889 
"WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE"   "WRN MUTATED" "WRN WILD-TYPE" 
   TCGA-IB-7890    TCGA-IB-7891    TCGA-IB-7893    TCGA-IB-7897    TCGA-IB-8126 
"WRN WILD-TYPE"   "WRN MUTATED"   "WRN MUTATED" "WRN WILD-TYPE" "WRN WILD-TYPE" 
   TCGA-IB-8127    TCGA-IB-A5SO    TCGA-IB-A5SP    TCGA-IB-A5SQ    TCGA-IB-A5SS 
"WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" 
   TCGA-IB-A5ST    TCGA-IB-A6UG    TCGA-LB-A7SX    TCGA-OE-A75W    TCGA-PZ-A5RE 
"WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" 
   TCGA-Q3-A5QY    TCGA-US-A779    TCGA-US-A77E    TCGA-US-A77J 
"WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" 
   TCGA-F2-6879    TCGA-F2-6880    TCGA-F2-7273    TCGA-F2-7276    TCGA-F2-A44G 
"WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" 
   TCGA-F2-A44H    TCGA-FB-A4P5    TCGA-FB-A4P6    TCGA-FB-A545    TCGA-FB-A5VM 
  "WRN MUTATED"   "WRN MUTATED" "WRN WILD-TYPE"   "WRN MUTATED" "WRN WILD-TYPE" 
   TCGA-FB-A78T    TCGA-FB-A7DR    TCGA-FZ-5920    TCGA-FZ-5922    TCGA-FZ-5923 
"WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" 
   TCGA-H6-8124    TCGA-H6-A45N    TCGA-H8-A6C1    TCGA-HZ-7289    TCGA-HZ-7918 
  "WRN MUTATED" "WRN WILD-TYPE"   "WRN MUTATED" "WRN WILD-TYPE" "WRN WILD-TYPE" 
   TCGA-HZ-7919    TCGA-HZ-7922    TCGA-HZ-7923    TCGA-HZ-7924    TCGA-HZ-7925 
"WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" 
   TCGA-HZ-7926    TCGA-HZ-8001    TCGA-HZ-8002    TCGA-HZ-8003    TCGA-HZ-8005 
"WRN WILD-TYPE" "WRN WILD-TYPE"   "WRN MUTATED" "WRN WILD-TYPE" "WRN WILD-TYPE" 
   TCGA-HZ-8315    TCGA-HZ-8317    TCGA-HZ-8636    TCGA-HZ-8638    TCGA-HZ-A49G 
"WRN WILD-TYPE"   "WRN MUTATED" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" 
   TCGA-HZ-A49H    TCGA-HZ-A4BH    TCGA-HZ-A4BK    TCGA-IB-7644    TCGA-IB-7645 
"WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" 
   TCGA-IB-7646    TCGA-IB-7647    TCGA-IB-7649    TCGA-IB-7651    TCGA-IB-7652 
"WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" 
   TCGA-IB-7885    TCGA-IB-7886    TCGA-IB-7887    TCGA-IB-7888    TCGA-IB-7889 
"WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE"   "WRN MUTATED" "WRN WILD-TYPE" 
   TCGA-IB-7890    TCGA-IB-7891    TCGA-IB-7893    TCGA-IB-7897    TCGA-IB-8126 
"WRN WILD-TYPE"   "WRN MUTATED"   "WRN MUTATED" "WRN WILD-TYPE" "WRN WILD-TYPE" 
   TCGA-IB-8127    TCGA-IB-A5SO    TCGA-IB-A5SP    TCGA-IB-A5SQ    TCGA-IB-A5SS 
"WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" 
   TCGA-IB-A5ST    TCGA-IB-A6UG    TCGA-LB-A7SX    TCGA-OE-A75W    TCGA-PZ-A5RE 
"WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" 
   TCGA-Q3-A5QY    TCGA-US-A779    TCGA-US-A77E    TCGA-US-A77J 
"WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" 
   TCGA-F2-6879    TCGA-F2-6880    TCGA-F2-7273    TCGA-F2-7276    TCGA-F2-A44G 
"WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" 
   TCGA-F2-A44H    TCGA-FB-A4P5    TCGA-FB-A4P6    TCGA-FB-A545    TCGA-FB-A5VM 
  "WRN MUTATED"   "WRN MUTATED" "WRN WILD-TYPE"   "WRN MUTATED" "WRN WILD-TYPE" 
   TCGA-FB-A78T    TCGA-FB-A7DR    TCGA-FZ-5920    TCGA-FZ-5922    TCGA-FZ-5923 
"WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" 
   TCGA-H6-8124    TCGA-H6-A45N    TCGA-H8-A6C1    TCGA-HZ-7289    TCGA-HZ-7918 
  "WRN MUTATED" "WRN WILD-TYPE"   "WRN MUTATED" "WRN WILD-TYPE" "WRN WILD-TYPE" 
   TCGA-HZ-7919    TCGA-HZ-7922    TCGA-HZ-7923    TCGA-HZ-7924    TCGA-HZ-7925 
"WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" 
   TCGA-HZ-7926    TCGA-HZ-8001    TCGA-HZ-8002    TCGA-HZ-8003    TCGA-HZ-8005 
"WRN WILD-TYPE" "WRN WILD-TYPE"   "WRN MUTATED" "WRN WILD-TYPE" "WRN WILD-TYPE" 
   TCGA-HZ-8315    TCGA-HZ-8317    TCGA-HZ-8636    TCGA-HZ-8638    TCGA-HZ-A49G 
"WRN WILD-TYPE"   "WRN MUTATED" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" 
   TCGA-HZ-A49H    TCGA-HZ-A4BH    TCGA-HZ-A4BK    TCGA-IB-7644    TCGA-IB-7645 
"WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" 
   TCGA-IB-7646    TCGA-IB-7647    TCGA-IB-7649    TCGA-IB-7651    TCGA-IB-7652 
"WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" 
   TCGA-IB-7885    TCGA-IB-7886    TCGA-IB-7887    TCGA-IB-7888    TCGA-IB-7889 
"WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE"   "WRN MUTATED" "WRN WILD-TYPE" 
   TCGA-IB-7890    TCGA-IB-7891    TCGA-IB-7893    TCGA-IB-7897    TCGA-IB-8126 
"WRN WILD-TYPE"   "WRN MUTATED"   "WRN MUTATED" "WRN WILD-TYPE" "WRN WILD-TYPE" 
   TCGA-IB-8127    TCGA-IB-A5SO    TCGA-IB-A5SP    TCGA-IB-A5SQ    TCGA-IB-A5SS 
"WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" 
   TCGA-IB-A5ST    TCGA-IB-A6UG    TCGA-LB-A7SX    TCGA-OE-A75W    TCGA-PZ-A5RE 
"WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" 
   TCGA-Q3-A5QY    TCGA-US-A779    TCGA-US-A77E    TCGA-US-A77J 
"WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" "WRN WILD-TYPE" 
[1] "hr=" "1.9"
D97V2, continuous
               vv
clus            STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  WRN MUTATED          0        1         4         6         0        0
  WRN WILD-TYPE        1        3         7        45         2        3
D97V3, multiclass
               vv
clus            T1+T2 T3+T4
  WRN MUTATED       1    10
  WRN WILD-TYPE     5    56
D97V4, multiclass
       clus
vv      WRN MUTATED WRN WILD-TYPE
  T1+T2           1             5
  T3+T4          10            56
D97V5, binary
               cls
clus             0  1
  WRN MUTATED    5  6
  WRN WILD-TYPE 12 48
[1] "tbl2"
               cls
clus            [,1] [,2]
  WRN MUTATED      5    6
  WRN WILD-TYPE   12   48
   clus
vv  WRN MUTATED WRN WILD-TYPE
  0           5            12
  1           6            48
               vv
clus            M0 M1 MX
  WRN MUTATED    6  0  5
  WRN WILD-TYPE 33  3 25
D97V6, multiclass
    clus
vv   WRN MUTATED WRN WILD-TYPE
  M0           6            33
  M1           0             3
  MX           5            25
D97V7, binary
               cls
clus             0  1
  WRN MUTATED    5  6
  WRN WILD-TYPE 31 30
[1] "tbl2"
               cls
clus            [,1] [,2]
  WRN MUTATED      5    6
  WRN WILD-TYPE   31   30
        clus
vv       WRN MUTATED WRN WILD-TYPE
  FEMALE           5            31
  MALE             6            30
               vv
clus            PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  WRN MUTATED                                    10
  WRN WILD-TYPE                                  55
               vv
clus            PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  WRN MUTATED                                       1
  WRN WILD-TYPE                                     3
               vv
clus            PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  WRN MUTATED                                                  0
  WRN WILD-TYPE                                                2
D97V8, multiclass
                                                  clus
vv                                                 WRN MUTATED WRN WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                       10            55
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                      1             3
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA           0             2
D97V9, continuous
D97V10, continuous
               vv
clus            R0 R1 RX
  WRN MUTATED    9  1  0
  WRN WILD-TYPE 33 23  2
D97V11, multiclass
    clus
vv   WRN MUTATED WRN WILD-TYPE
  R0           9            33
  R1           1            23
  RX           0             2
D97V12, continuous

Clustering(98) Variable = PDZD2 MUTATION ANALYSIS
D98V1, survival
                 sevent
clus2              0  1
  PDZD2 MUTATED    8  9
  PDZD2 WILD-TYPE 32 20
  PDZD2 MUTATED PDZD2 WILD-TYPE 
             17              52 
  PDZD2 MUTATED PDZD2 WILD-TYPE 
              9              20 
$`PDZD2 MUTATED`
TCGA-F2-7276 TCGA-FB-A4P6 TCGA-H6-A45N TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8315 
        7.10        11.93         7.66         0.26         0.62         0.92 
TCGA-HZ-A49G TCGA-IB-7644 TCGA-IB-7649 TCGA-IB-7651 TCGA-IB-7652 TCGA-IB-7889 
        0.76        11.41        15.35        19.82        15.65        15.81 
TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-A5SQ TCGA-OE-A75W TCGA-PZ-A5RE 
        3.85        15.98         7.20         3.62         8.12 

$`PDZD2 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-A44G TCGA-F2-A44H TCGA-FB-A4P5 
       10.98         9.70        11.84         5.03        19.27         0.13 
TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR TCGA-FZ-5920 TCGA-FZ-5922 
       12.66         2.47         0.03         5.46         2.01        36.20 
TCGA-FZ-5923 TCGA-H6-8124 TCGA-H8-A6C1 TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-7919 
       20.81        12.89        13.02         7.89         0.92         0.66 
TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-8002 TCGA-HZ-8003 
        0.13         0.26        12.13        11.87         0.79         0.69 
TCGA-HZ-8005 TCGA-HZ-8317 TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49H TCGA-HZ-A4BH 
        3.95         0.53         0.16         2.99         0.95         6.38 
TCGA-HZ-A4BK TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7885 TCGA-IB-7886 
        1.51        49.38         4.77        21.90        27.98         4.04 
TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-8126 TCGA-IB-8127 
        3.62        43.79        19.66        16.04         0.56        17.16 
TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX 
       10.82         9.86        15.12         0.26         1.35         4.18 
TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
       13.68        16.80        14.14        18.67 

  PDZD2 MUTATED PDZD2 WILD-TYPE 
           0.26            0.03 
  PDZD2 MUTATED PDZD2 WILD-TYPE 
          19.82           49.38 
  PDZD2 MUTATED PDZD2 WILD-TYPE 
          7.660           7.135 
[1] "0.3 - 19.8 (7.7)" "0.0 - 49.4 (7.1)"
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"PDZD2 WILD-TYPE" "PDZD2 WILD-TYPE" "PDZD2 WILD-TYPE"   "PDZD2 MUTATED" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"PDZD2 WILD-TYPE" "PDZD2 WILD-TYPE" "PDZD2 WILD-TYPE"   "PDZD2 MUTATED" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"PDZD2 WILD-TYPE" "PDZD2 WILD-TYPE" "PDZD2 WILD-TYPE" "PDZD2 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"PDZD2 WILD-TYPE" "PDZD2 WILD-TYPE" "PDZD2 WILD-TYPE" "PDZD2 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
  "PDZD2 MUTATED" "PDZD2 WILD-TYPE" "PDZD2 WILD-TYPE" "PDZD2 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"PDZD2 WILD-TYPE" "PDZD2 WILD-TYPE" "PDZD2 WILD-TYPE" "PDZD2 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"PDZD2 WILD-TYPE"   "PDZD2 MUTATED"   "PDZD2 MUTATED" "PDZD2 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"PDZD2 WILD-TYPE" "PDZD2 WILD-TYPE"   "PDZD2 MUTATED" "PDZD2 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"PDZD2 WILD-TYPE" "PDZD2 WILD-TYPE"   "PDZD2 MUTATED" "PDZD2 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"PDZD2 WILD-TYPE" "PDZD2 WILD-TYPE"   "PDZD2 MUTATED" "PDZD2 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"PDZD2 WILD-TYPE" "PDZD2 WILD-TYPE"   "PDZD2 MUTATED"   "PDZD2 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
  "PDZD2 MUTATED" "PDZD2 WILD-TYPE" "PDZD2 WILD-TYPE" "PDZD2 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"PDZD2 WILD-TYPE"   "PDZD2 MUTATED" "PDZD2 WILD-TYPE" "PDZD2 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
  "PDZD2 MUTATED"   "PDZD2 MUTATED" "PDZD2 WILD-TYPE" "PDZD2 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"PDZD2 WILD-TYPE" "PDZD2 WILD-TYPE"   "PDZD2 MUTATED" "PDZD2 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"PDZD2 WILD-TYPE" "PDZD2 WILD-TYPE" "PDZD2 WILD-TYPE"   "PDZD2 MUTATED" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
  "PDZD2 MUTATED" "PDZD2 WILD-TYPE" "PDZD2 WILD-TYPE" "PDZD2 WILD-TYPE" 
     TCGA-US-A77J 
"PDZD2 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"PDZD2 WILD-TYPE" "PDZD2 WILD-TYPE" "PDZD2 WILD-TYPE"   "PDZD2 MUTATED" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"PDZD2 WILD-TYPE" "PDZD2 WILD-TYPE" "PDZD2 WILD-TYPE"   "PDZD2 MUTATED" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"PDZD2 WILD-TYPE" "PDZD2 WILD-TYPE" "PDZD2 WILD-TYPE" "PDZD2 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"PDZD2 WILD-TYPE" "PDZD2 WILD-TYPE" "PDZD2 WILD-TYPE" "PDZD2 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
  "PDZD2 MUTATED" "PDZD2 WILD-TYPE" "PDZD2 WILD-TYPE" "PDZD2 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"PDZD2 WILD-TYPE" "PDZD2 WILD-TYPE" "PDZD2 WILD-TYPE" "PDZD2 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"PDZD2 WILD-TYPE"   "PDZD2 MUTATED"   "PDZD2 MUTATED" "PDZD2 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"PDZD2 WILD-TYPE" "PDZD2 WILD-TYPE"   "PDZD2 MUTATED" "PDZD2 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"PDZD2 WILD-TYPE" "PDZD2 WILD-TYPE"   "PDZD2 MUTATED" "PDZD2 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"PDZD2 WILD-TYPE" "PDZD2 WILD-TYPE"   "PDZD2 MUTATED" "PDZD2 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"PDZD2 WILD-TYPE" "PDZD2 WILD-TYPE"   "PDZD2 MUTATED"   "PDZD2 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
  "PDZD2 MUTATED" "PDZD2 WILD-TYPE" "PDZD2 WILD-TYPE" "PDZD2 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"PDZD2 WILD-TYPE"   "PDZD2 MUTATED" "PDZD2 WILD-TYPE" "PDZD2 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
  "PDZD2 MUTATED"   "PDZD2 MUTATED" "PDZD2 WILD-TYPE" "PDZD2 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"PDZD2 WILD-TYPE" "PDZD2 WILD-TYPE"   "PDZD2 MUTATED" "PDZD2 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"PDZD2 WILD-TYPE" "PDZD2 WILD-TYPE" "PDZD2 WILD-TYPE"   "PDZD2 MUTATED" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
  "PDZD2 MUTATED" "PDZD2 WILD-TYPE" "PDZD2 WILD-TYPE" "PDZD2 WILD-TYPE" 
     TCGA-US-A77J 
"PDZD2 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"PDZD2 WILD-TYPE" "PDZD2 WILD-TYPE" "PDZD2 WILD-TYPE"   "PDZD2 MUTATED" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"PDZD2 WILD-TYPE" "PDZD2 WILD-TYPE" "PDZD2 WILD-TYPE"   "PDZD2 MUTATED" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"PDZD2 WILD-TYPE" "PDZD2 WILD-TYPE" "PDZD2 WILD-TYPE" "PDZD2 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"PDZD2 WILD-TYPE" "PDZD2 WILD-TYPE" "PDZD2 WILD-TYPE" "PDZD2 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
  "PDZD2 MUTATED" "PDZD2 WILD-TYPE" "PDZD2 WILD-TYPE" "PDZD2 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"PDZD2 WILD-TYPE" "PDZD2 WILD-TYPE" "PDZD2 WILD-TYPE" "PDZD2 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"PDZD2 WILD-TYPE"   "PDZD2 MUTATED"   "PDZD2 MUTATED" "PDZD2 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"PDZD2 WILD-TYPE" "PDZD2 WILD-TYPE"   "PDZD2 MUTATED" "PDZD2 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"PDZD2 WILD-TYPE" "PDZD2 WILD-TYPE"   "PDZD2 MUTATED" "PDZD2 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"PDZD2 WILD-TYPE" "PDZD2 WILD-TYPE"   "PDZD2 MUTATED" "PDZD2 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"PDZD2 WILD-TYPE" "PDZD2 WILD-TYPE"   "PDZD2 MUTATED"   "PDZD2 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
  "PDZD2 MUTATED" "PDZD2 WILD-TYPE" "PDZD2 WILD-TYPE" "PDZD2 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"PDZD2 WILD-TYPE"   "PDZD2 MUTATED" "PDZD2 WILD-TYPE" "PDZD2 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
  "PDZD2 MUTATED"   "PDZD2 MUTATED" "PDZD2 WILD-TYPE" "PDZD2 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"PDZD2 WILD-TYPE" "PDZD2 WILD-TYPE"   "PDZD2 MUTATED" "PDZD2 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"PDZD2 WILD-TYPE" "PDZD2 WILD-TYPE" "PDZD2 WILD-TYPE"   "PDZD2 MUTATED" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
  "PDZD2 MUTATED" "PDZD2 WILD-TYPE" "PDZD2 WILD-TYPE" "PDZD2 WILD-TYPE" 
     TCGA-US-A77J 
"PDZD2 WILD-TYPE" 
[1] "hr=" "2"  
D98V2, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  PDZD2 MUTATED          0        1         3        11         1        1
  PDZD2 WILD-TYPE        1        3         8        40         1        2
D98V3, multiclass
                 vv
clus              T1+T2 T3+T4
  PDZD2 MUTATED       2    15
  PDZD2 WILD-TYPE     4    51
D98V4, multiclass
       clus
vv      PDZD2 MUTATED PDZD2 WILD-TYPE
  T1+T2             2               4
  T3+T4            15              51
D98V5, binary
                 cls
clus               0  1
  PDZD2 MUTATED    5 12
  PDZD2 WILD-TYPE 12 42
[1] "tbl2"
                 cls
clus              [,1] [,2]
  PDZD2 MUTATED      5   12
  PDZD2 WILD-TYPE   12   42
   clus
vv  PDZD2 MUTATED PDZD2 WILD-TYPE
  0             5              12
  1            12              42
                 vv
clus              M0 M1 MX
  PDZD2 MUTATED    9  1  7
  PDZD2 WILD-TYPE 30  2 23
D98V6, multiclass
    clus
vv   PDZD2 MUTATED PDZD2 WILD-TYPE
  M0             9              30
  M1             1               2
  MX             7              23
D98V7, binary
                 cls
clus               0  1
  PDZD2 MUTATED   11  6
  PDZD2 WILD-TYPE 25 30
[1] "tbl2"
                 cls
clus              [,1] [,2]
  PDZD2 MUTATED     11    6
  PDZD2 WILD-TYPE   25   30
        clus
vv       PDZD2 MUTATED PDZD2 WILD-TYPE
  FEMALE            11              25
  MALE               6              30
                 vv
clus              PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  PDZD2 MUTATED                                    16
  PDZD2 WILD-TYPE                                  49
                 vv
clus              PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  PDZD2 MUTATED                                       1
  PDZD2 WILD-TYPE                                     3
                 vv
clus              PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  PDZD2 MUTATED                                                  0
  PDZD2 WILD-TYPE                                                2
D98V8, multiclass
                                                  clus
vv                                                 PDZD2 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                         16
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                        1
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA             0
                                                  clus
vv                                                 PDZD2 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                           49
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                          3
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA               2
D98V9, continuous
D98V10, continuous
                 vv
clus              R0 R1 RX
  PDZD2 MUTATED    8  5  1
  PDZD2 WILD-TYPE 34 19  1
D98V11, multiclass
    clus
vv   PDZD2 MUTATED PDZD2 WILD-TYPE
  R0             8              34
  R1             5              19
  RX             1               1
D98V12, continuous

Clustering(99) Variable = AARS2 MUTATION ANALYSIS
D99V1, survival
                 sevent
clus2              0  1
  AARS2 MUTATED    7  3
  AARS2 WILD-TYPE 33 26
  AARS2 MUTATED AARS2 WILD-TYPE 
             10              59 
  AARS2 MUTATED AARS2 WILD-TYPE 
              3              26 
$`AARS2 MUTATED`
TCGA-F2-7276 TCGA-F2-A44H TCGA-FB-A545 TCGA-H8-A6C1 TCGA-HZ-8001 TCGA-HZ-8002 
        7.10        19.27        12.66        13.02         0.62         0.79 
TCGA-HZ-8317 TCGA-IB-7651 TCGA-IB-7893 TCGA-IB-8126 
        0.53        19.82         3.85         0.56 

$`AARS2 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-A44G TCGA-FB-A4P5 TCGA-FB-A4P6 
       10.98         9.70        11.84         5.03         0.13        11.93 
TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR TCGA-FZ-5920 TCGA-FZ-5922 TCGA-FZ-5923 
        2.47         0.03         5.46         2.01        36.20        20.81 
TCGA-H6-8124 TCGA-H6-A45N TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7922 
       12.89         7.66         7.89         0.92         0.66         0.13 
TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8003 TCGA-HZ-8005 
        0.26        12.13        11.87         0.26         0.69         3.95 
TCGA-HZ-8315 TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH 
        0.92         0.16         2.99         0.76         0.95         6.38 
TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 
        1.51        11.41        49.38         4.77        21.90        15.35 
TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 
       15.65        27.98         4.04         3.62        43.79        15.81 
TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-7897 TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP 
       19.66        16.04        15.98        17.16        10.82         9.86 
TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W 
        7.20        15.12         0.26         1.35         4.18         3.62 
TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
        8.12        13.68        16.80        14.14        18.67 

  AARS2 MUTATED AARS2 WILD-TYPE 
           0.53            0.03 
  AARS2 MUTATED AARS2 WILD-TYPE 
          19.82           49.38 
  AARS2 MUTATED AARS2 WILD-TYPE 
          5.475           7.890 
[1] "0.5 - 19.8 (5.5)" "0.0 - 49.4 (7.9)"
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"AARS2 WILD-TYPE" "AARS2 WILD-TYPE" "AARS2 WILD-TYPE"   "AARS2 MUTATED" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"AARS2 WILD-TYPE"   "AARS2 MUTATED" "AARS2 WILD-TYPE" "AARS2 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
  "AARS2 MUTATED" "AARS2 WILD-TYPE" "AARS2 WILD-TYPE" "AARS2 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"AARS2 WILD-TYPE" "AARS2 WILD-TYPE" "AARS2 WILD-TYPE" "AARS2 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"AARS2 WILD-TYPE"   "AARS2 MUTATED" "AARS2 WILD-TYPE" "AARS2 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"AARS2 WILD-TYPE" "AARS2 WILD-TYPE" "AARS2 WILD-TYPE" "AARS2 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"AARS2 WILD-TYPE" "AARS2 WILD-TYPE"   "AARS2 MUTATED"   "AARS2 MUTATED" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"AARS2 WILD-TYPE" "AARS2 WILD-TYPE" "AARS2 WILD-TYPE"   "AARS2 MUTATED" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"AARS2 WILD-TYPE" "AARS2 WILD-TYPE" "AARS2 WILD-TYPE" "AARS2 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"AARS2 WILD-TYPE" "AARS2 WILD-TYPE" "AARS2 WILD-TYPE" "AARS2 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"AARS2 WILD-TYPE" "AARS2 WILD-TYPE" "AARS2 WILD-TYPE"   "AARS2 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"AARS2 WILD-TYPE" "AARS2 WILD-TYPE" "AARS2 WILD-TYPE" "AARS2 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"AARS2 WILD-TYPE" "AARS2 WILD-TYPE" "AARS2 WILD-TYPE" "AARS2 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
  "AARS2 MUTATED" "AARS2 WILD-TYPE"   "AARS2 MUTATED" "AARS2 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"AARS2 WILD-TYPE" "AARS2 WILD-TYPE" "AARS2 WILD-TYPE" "AARS2 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"AARS2 WILD-TYPE" "AARS2 WILD-TYPE" "AARS2 WILD-TYPE" "AARS2 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"AARS2 WILD-TYPE" "AARS2 WILD-TYPE" "AARS2 WILD-TYPE" "AARS2 WILD-TYPE" 
     TCGA-US-A77J 
"AARS2 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"AARS2 WILD-TYPE" "AARS2 WILD-TYPE" "AARS2 WILD-TYPE"   "AARS2 MUTATED" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"AARS2 WILD-TYPE"   "AARS2 MUTATED" "AARS2 WILD-TYPE" "AARS2 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
  "AARS2 MUTATED" "AARS2 WILD-TYPE" "AARS2 WILD-TYPE" "AARS2 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"AARS2 WILD-TYPE" "AARS2 WILD-TYPE" "AARS2 WILD-TYPE" "AARS2 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"AARS2 WILD-TYPE"   "AARS2 MUTATED" "AARS2 WILD-TYPE" "AARS2 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"AARS2 WILD-TYPE" "AARS2 WILD-TYPE" "AARS2 WILD-TYPE" "AARS2 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"AARS2 WILD-TYPE" "AARS2 WILD-TYPE"   "AARS2 MUTATED"   "AARS2 MUTATED" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"AARS2 WILD-TYPE" "AARS2 WILD-TYPE" "AARS2 WILD-TYPE"   "AARS2 MUTATED" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"AARS2 WILD-TYPE" "AARS2 WILD-TYPE" "AARS2 WILD-TYPE" "AARS2 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"AARS2 WILD-TYPE" "AARS2 WILD-TYPE" "AARS2 WILD-TYPE" "AARS2 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"AARS2 WILD-TYPE" "AARS2 WILD-TYPE" "AARS2 WILD-TYPE"   "AARS2 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"AARS2 WILD-TYPE" "AARS2 WILD-TYPE" "AARS2 WILD-TYPE" "AARS2 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"AARS2 WILD-TYPE" "AARS2 WILD-TYPE" "AARS2 WILD-TYPE" "AARS2 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
  "AARS2 MUTATED" "AARS2 WILD-TYPE"   "AARS2 MUTATED" "AARS2 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"AARS2 WILD-TYPE" "AARS2 WILD-TYPE" "AARS2 WILD-TYPE" "AARS2 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"AARS2 WILD-TYPE" "AARS2 WILD-TYPE" "AARS2 WILD-TYPE" "AARS2 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"AARS2 WILD-TYPE" "AARS2 WILD-TYPE" "AARS2 WILD-TYPE" "AARS2 WILD-TYPE" 
     TCGA-US-A77J 
"AARS2 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"AARS2 WILD-TYPE" "AARS2 WILD-TYPE" "AARS2 WILD-TYPE"   "AARS2 MUTATED" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"AARS2 WILD-TYPE"   "AARS2 MUTATED" "AARS2 WILD-TYPE" "AARS2 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
  "AARS2 MUTATED" "AARS2 WILD-TYPE" "AARS2 WILD-TYPE" "AARS2 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"AARS2 WILD-TYPE" "AARS2 WILD-TYPE" "AARS2 WILD-TYPE" "AARS2 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"AARS2 WILD-TYPE"   "AARS2 MUTATED" "AARS2 WILD-TYPE" "AARS2 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"AARS2 WILD-TYPE" "AARS2 WILD-TYPE" "AARS2 WILD-TYPE" "AARS2 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"AARS2 WILD-TYPE" "AARS2 WILD-TYPE"   "AARS2 MUTATED"   "AARS2 MUTATED" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"AARS2 WILD-TYPE" "AARS2 WILD-TYPE" "AARS2 WILD-TYPE"   "AARS2 MUTATED" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"AARS2 WILD-TYPE" "AARS2 WILD-TYPE" "AARS2 WILD-TYPE" "AARS2 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"AARS2 WILD-TYPE" "AARS2 WILD-TYPE" "AARS2 WILD-TYPE" "AARS2 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"AARS2 WILD-TYPE" "AARS2 WILD-TYPE" "AARS2 WILD-TYPE"   "AARS2 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"AARS2 WILD-TYPE" "AARS2 WILD-TYPE" "AARS2 WILD-TYPE" "AARS2 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"AARS2 WILD-TYPE" "AARS2 WILD-TYPE" "AARS2 WILD-TYPE" "AARS2 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
  "AARS2 MUTATED" "AARS2 WILD-TYPE"   "AARS2 MUTATED" "AARS2 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"AARS2 WILD-TYPE" "AARS2 WILD-TYPE" "AARS2 WILD-TYPE" "AARS2 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"AARS2 WILD-TYPE" "AARS2 WILD-TYPE" "AARS2 WILD-TYPE" "AARS2 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"AARS2 WILD-TYPE" "AARS2 WILD-TYPE" "AARS2 WILD-TYPE" "AARS2 WILD-TYPE" 
     TCGA-US-A77J 
"AARS2 WILD-TYPE" 
[1] "hr=" "1.1"
D99V2, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  AARS2 MUTATED          0        0         3         6         2        0
  AARS2 WILD-TYPE        1        4         8        45         0        3
D99V3, multiclass
                 vv
clus              T1+T2 T3+T4
  AARS2 MUTATED       0    11
  AARS2 WILD-TYPE     6    55
D99V4, multiclass
       clus
vv      AARS2 MUTATED AARS2 WILD-TYPE
  T1+T2             0               6
  T3+T4            11              55
D99V5, binary
                 cls
clus               0  1
  AARS2 MUTATED    4  7
  AARS2 WILD-TYPE 13 47
[1] "tbl2"
                 cls
clus              [,1] [,2]
  AARS2 MUTATED      4    7
  AARS2 WILD-TYPE   13   47
   clus
vv  AARS2 MUTATED AARS2 WILD-TYPE
  0             4              13
  1             7              47
                 vv
clus              M0 M1 MX
  AARS2 MUTATED    6  0  5
  AARS2 WILD-TYPE 33  3 25
D99V6, multiclass
    clus
vv   AARS2 MUTATED AARS2 WILD-TYPE
  M0             6              33
  M1             0               3
  MX             5              25
D99V7, binary
                 cls
clus               0  1
  AARS2 MUTATED    5  6
  AARS2 WILD-TYPE 31 30
[1] "tbl2"
                 cls
clus              [,1] [,2]
  AARS2 MUTATED      5    6
  AARS2 WILD-TYPE   31   30
        clus
vv       AARS2 MUTATED AARS2 WILD-TYPE
  FEMALE             5              31
  MALE               6              30
                 vv
clus              PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  AARS2 MUTATED                                    10
  AARS2 WILD-TYPE                                  55
                 vv
clus              PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  AARS2 MUTATED                                       1
  AARS2 WILD-TYPE                                     3
                 vv
clus              PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  AARS2 MUTATED                                                  0
  AARS2 WILD-TYPE                                                2
D99V8, multiclass
                                                  clus
vv                                                 AARS2 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                         10
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                        1
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA             0
                                                  clus
vv                                                 AARS2 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                           55
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                          3
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA               2
D99V9, continuous
D99V10, continuous
                 vv
clus              R0 R1 RX
  AARS2 MUTATED    8  2  0
  AARS2 WILD-TYPE 34 22  2
D99V11, multiclass
    clus
vv   AARS2 MUTATED AARS2 WILD-TYPE
  R0             8              34
  R1             2              22
  RX             0               2
D99V12, continuous

Clustering(100) Variable = SHPRH MUTATION ANALYSIS
D100V1, survival
                 sevent
clus2              0  1
  SHPRH MUTATED    4  5
  SHPRH WILD-TYPE 36 24
  SHPRH MUTATED SHPRH WILD-TYPE 
              9              60 
  SHPRH MUTATED SHPRH WILD-TYPE 
              5              24 
$`SHPRH MUTATED`
TCGA-F2-6880 TCGA-F2-A44G TCGA-FB-A4P5 TCGA-HZ-7922 TCGA-HZ-A49H TCGA-HZ-A4BK 
        9.70         5.03         0.13         0.13         0.95         1.51 
TCGA-IB-7646 TCGA-IB-7649 TCGA-IB-7651 
        4.77        15.35        19.82 

$`SHPRH WILD-TYPE`
TCGA-F2-6879 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44H TCGA-FB-A4P6 TCGA-FB-A545 
       10.98        11.84         7.10        19.27        11.93        12.66 
TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR TCGA-FZ-5920 TCGA-FZ-5922 TCGA-FZ-5923 
        2.47         0.03         5.46         2.01        36.20        20.81 
TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-7919 
       12.89         7.66        13.02         7.89         0.92         0.66 
TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 
        0.26        12.13        11.87         0.26         0.62         0.79 
TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8636 TCGA-HZ-8638 
        0.69         3.95         0.92         0.53         0.16         2.99 
TCGA-HZ-A49G TCGA-HZ-A4BH TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7647 TCGA-IB-7652 
        0.76         6.38        11.41        49.38        21.90        15.65 
TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 
       27.98         4.04         3.62        43.79        15.81        19.66 
TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO 
       16.04         3.85        15.98         0.56        17.16        10.82 
TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX 
        9.86         7.20        15.12         0.26         1.35         4.18 
TCGA-OE-A75W TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
        3.62         8.12        13.68        16.80        14.14        18.67 

  SHPRH MUTATED SHPRH WILD-TYPE 
           0.13            0.03 
  SHPRH MUTATED SHPRH WILD-TYPE 
          19.82           49.38 
  SHPRH MUTATED SHPRH WILD-TYPE 
          4.770           8.005 
[1] "0.1 - 19.8 (4.8)" "0.0 - 49.4 (8.0)"
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"SHPRH WILD-TYPE"   "SHPRH MUTATED" "SHPRH WILD-TYPE" "SHPRH WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
  "SHPRH MUTATED" "SHPRH WILD-TYPE"   "SHPRH MUTATED" "SHPRH WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"SHPRH WILD-TYPE" "SHPRH WILD-TYPE" "SHPRH WILD-TYPE" "SHPRH WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"SHPRH WILD-TYPE" "SHPRH WILD-TYPE" "SHPRH WILD-TYPE" "SHPRH WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"SHPRH WILD-TYPE" "SHPRH WILD-TYPE" "SHPRH WILD-TYPE" "SHPRH WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"SHPRH WILD-TYPE"   "SHPRH MUTATED" "SHPRH WILD-TYPE" "SHPRH WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"SHPRH WILD-TYPE" "SHPRH WILD-TYPE" "SHPRH WILD-TYPE" "SHPRH WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"SHPRH WILD-TYPE" "SHPRH WILD-TYPE" "SHPRH WILD-TYPE" "SHPRH WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"SHPRH WILD-TYPE" "SHPRH WILD-TYPE" "SHPRH WILD-TYPE"   "SHPRH MUTATED" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"SHPRH WILD-TYPE"   "SHPRH MUTATED" "SHPRH WILD-TYPE" "SHPRH WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
  "SHPRH MUTATED" "SHPRH WILD-TYPE"   "SHPRH MUTATED"   "SHPRH MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"SHPRH WILD-TYPE" "SHPRH WILD-TYPE" "SHPRH WILD-TYPE" "SHPRH WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"SHPRH WILD-TYPE" "SHPRH WILD-TYPE" "SHPRH WILD-TYPE" "SHPRH WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"SHPRH WILD-TYPE" "SHPRH WILD-TYPE" "SHPRH WILD-TYPE" "SHPRH WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"SHPRH WILD-TYPE" "SHPRH WILD-TYPE" "SHPRH WILD-TYPE" "SHPRH WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"SHPRH WILD-TYPE" "SHPRH WILD-TYPE" "SHPRH WILD-TYPE" "SHPRH WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"SHPRH WILD-TYPE" "SHPRH WILD-TYPE" "SHPRH WILD-TYPE" "SHPRH WILD-TYPE" 
     TCGA-US-A77J 
"SHPRH WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"SHPRH WILD-TYPE"   "SHPRH MUTATED" "SHPRH WILD-TYPE" "SHPRH WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
  "SHPRH MUTATED" "SHPRH WILD-TYPE"   "SHPRH MUTATED" "SHPRH WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"SHPRH WILD-TYPE" "SHPRH WILD-TYPE" "SHPRH WILD-TYPE" "SHPRH WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"SHPRH WILD-TYPE" "SHPRH WILD-TYPE" "SHPRH WILD-TYPE" "SHPRH WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"SHPRH WILD-TYPE" "SHPRH WILD-TYPE" "SHPRH WILD-TYPE" "SHPRH WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"SHPRH WILD-TYPE"   "SHPRH MUTATED" "SHPRH WILD-TYPE" "SHPRH WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"SHPRH WILD-TYPE" "SHPRH WILD-TYPE" "SHPRH WILD-TYPE" "SHPRH WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"SHPRH WILD-TYPE" "SHPRH WILD-TYPE" "SHPRH WILD-TYPE" "SHPRH WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"SHPRH WILD-TYPE" "SHPRH WILD-TYPE" "SHPRH WILD-TYPE"   "SHPRH MUTATED" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"SHPRH WILD-TYPE"   "SHPRH MUTATED" "SHPRH WILD-TYPE" "SHPRH WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
  "SHPRH MUTATED" "SHPRH WILD-TYPE"   "SHPRH MUTATED"   "SHPRH MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"SHPRH WILD-TYPE" "SHPRH WILD-TYPE" "SHPRH WILD-TYPE" "SHPRH WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"SHPRH WILD-TYPE" "SHPRH WILD-TYPE" "SHPRH WILD-TYPE" "SHPRH WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"SHPRH WILD-TYPE" "SHPRH WILD-TYPE" "SHPRH WILD-TYPE" "SHPRH WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"SHPRH WILD-TYPE" "SHPRH WILD-TYPE" "SHPRH WILD-TYPE" "SHPRH WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"SHPRH WILD-TYPE" "SHPRH WILD-TYPE" "SHPRH WILD-TYPE" "SHPRH WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"SHPRH WILD-TYPE" "SHPRH WILD-TYPE" "SHPRH WILD-TYPE" "SHPRH WILD-TYPE" 
     TCGA-US-A77J 
"SHPRH WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"SHPRH WILD-TYPE"   "SHPRH MUTATED" "SHPRH WILD-TYPE" "SHPRH WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
  "SHPRH MUTATED" "SHPRH WILD-TYPE"   "SHPRH MUTATED" "SHPRH WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"SHPRH WILD-TYPE" "SHPRH WILD-TYPE" "SHPRH WILD-TYPE" "SHPRH WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"SHPRH WILD-TYPE" "SHPRH WILD-TYPE" "SHPRH WILD-TYPE" "SHPRH WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"SHPRH WILD-TYPE" "SHPRH WILD-TYPE" "SHPRH WILD-TYPE" "SHPRH WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"SHPRH WILD-TYPE"   "SHPRH MUTATED" "SHPRH WILD-TYPE" "SHPRH WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"SHPRH WILD-TYPE" "SHPRH WILD-TYPE" "SHPRH WILD-TYPE" "SHPRH WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"SHPRH WILD-TYPE" "SHPRH WILD-TYPE" "SHPRH WILD-TYPE" "SHPRH WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"SHPRH WILD-TYPE" "SHPRH WILD-TYPE" "SHPRH WILD-TYPE"   "SHPRH MUTATED" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"SHPRH WILD-TYPE"   "SHPRH MUTATED" "SHPRH WILD-TYPE" "SHPRH WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
  "SHPRH MUTATED" "SHPRH WILD-TYPE"   "SHPRH MUTATED"   "SHPRH MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"SHPRH WILD-TYPE" "SHPRH WILD-TYPE" "SHPRH WILD-TYPE" "SHPRH WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"SHPRH WILD-TYPE" "SHPRH WILD-TYPE" "SHPRH WILD-TYPE" "SHPRH WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"SHPRH WILD-TYPE" "SHPRH WILD-TYPE" "SHPRH WILD-TYPE" "SHPRH WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"SHPRH WILD-TYPE" "SHPRH WILD-TYPE" "SHPRH WILD-TYPE" "SHPRH WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"SHPRH WILD-TYPE" "SHPRH WILD-TYPE" "SHPRH WILD-TYPE" "SHPRH WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"SHPRH WILD-TYPE" "SHPRH WILD-TYPE" "SHPRH WILD-TYPE" "SHPRH WILD-TYPE" 
     TCGA-US-A77J 
"SHPRH WILD-TYPE" 
[1] "hr=" "2.4"
D100V2, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  SHPRH MUTATED          0        0         0         9         0        0
  SHPRH WILD-TYPE        1        4        11        42         2        3
D100V3, multiclass
                 vv
clus              T1+T2 T3+T4
  SHPRH MUTATED       0     9
  SHPRH WILD-TYPE     6    57
D100V4, multiclass
       clus
vv      SHPRH MUTATED SHPRH WILD-TYPE
  T1+T2             0               6
  T3+T4             9              57
D100V5, binary
                 cls
clus               0  1
  SHPRH MUTATED    0  9
  SHPRH WILD-TYPE 17 45
[1] "tbl2"
                 cls
clus              [,1] [,2]
  SHPRH MUTATED      0    9
  SHPRH WILD-TYPE   17   45
   clus
vv  SHPRH MUTATED SHPRH WILD-TYPE
  0             0              17
  1             9              45
                 vv
clus              M0 M1 MX
  SHPRH MUTATED    5  0  4
  SHPRH WILD-TYPE 34  3 26
D100V6, multiclass
    clus
vv   SHPRH MUTATED SHPRH WILD-TYPE
  M0             5              34
  M1             0               3
  MX             4              26
D100V7, binary
                 cls
clus               0  1
  SHPRH MUTATED    6  3
  SHPRH WILD-TYPE 30 33
[1] "tbl2"
                 cls
clus              [,1] [,2]
  SHPRH MUTATED      6    3
  SHPRH WILD-TYPE   30   33
        clus
vv       SHPRH MUTATED SHPRH WILD-TYPE
  FEMALE             6              30
  MALE               3              33
                 vv
clus              PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  SHPRH MUTATED                                     8
  SHPRH WILD-TYPE                                  57
                 vv
clus              PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  SHPRH MUTATED                                       1
  SHPRH WILD-TYPE                                     3
                 vv
clus              PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  SHPRH MUTATED                                                  0
  SHPRH WILD-TYPE                                                2
D100V8, multiclass
                                                  clus
vv                                                 SHPRH MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                          8
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                        1
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA             0
                                                  clus
vv                                                 SHPRH WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                           57
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                          3
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA               2
D100V9, continuous
D100V10, continuous
                 vv
clus              R0 R1 RX
  SHPRH MUTATED    5  4  0
  SHPRH WILD-TYPE 37 20  2
D100V11, multiclass
    clus
vv   SHPRH MUTATED SHPRH WILD-TYPE
  R0             5              37
  R1             4              20
  RX             0               2
D100V12, continuous

Clustering(101) Variable = ZNF337 MUTATION ANALYSIS
D101V1, survival
                  sevent
clus2               0  1
  ZNF337 MUTATED    6  4
  ZNF337 WILD-TYPE 34 25
  ZNF337 MUTATED ZNF337 WILD-TYPE 
              10               59 
  ZNF337 MUTATED ZNF337 WILD-TYPE 
               4               25 
$`ZNF337 MUTATED`
TCGA-F2-7276 TCGA-FB-A4P5 TCGA-H8-A6C1 TCGA-HZ-7919 TCGA-HZ-8636 TCGA-HZ-A49H 
        7.10         0.13        13.02         0.66         0.16         0.95 
TCGA-IB-7646 TCGA-IB-7651 TCGA-IB-7652 TCGA-IB-8127 
        4.77        19.82        15.65        17.16 

$`ZNF337 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-A44G TCGA-F2-A44H TCGA-FB-A4P6 
       10.98         9.70        11.84         5.03        19.27        11.93 
TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR TCGA-FZ-5920 TCGA-FZ-5922 
       12.66         2.47         0.03         5.46         2.01        36.20 
TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-7922 
       20.81        12.89         7.66         7.89         0.92         0.13 
TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 
        0.26        12.13        11.87         0.26         0.62         0.79 
TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8638 TCGA-HZ-A49G 
        0.69         3.95         0.92         0.53         2.99         0.76 
TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7647 TCGA-IB-7649 
        6.38         1.51        11.41        49.38        21.90        15.35 
TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 
       27.98         4.04         3.62        43.79        15.81        19.66 
TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-A5SO TCGA-IB-A5SP 
       16.04         3.85        15.98         0.56        10.82         9.86 
TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W 
        7.20        15.12         0.26         1.35         4.18         3.62 
TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
        8.12        13.68        16.80        14.14        18.67 

  ZNF337 MUTATED ZNF337 WILD-TYPE 
            0.13             0.03 
  ZNF337 MUTATED ZNF337 WILD-TYPE 
           19.82            49.38 
  ZNF337 MUTATED ZNF337 WILD-TYPE 
           5.935            7.890 
[1] "0.1 - 19.8 (5.9)" "0.0 - 49.4 (7.9)"
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
"ZNF337 WILD-TYPE" "ZNF337 WILD-TYPE" "ZNF337 WILD-TYPE"   "ZNF337 MUTATED" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"ZNF337 WILD-TYPE" "ZNF337 WILD-TYPE"   "ZNF337 MUTATED" "ZNF337 WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
"ZNF337 WILD-TYPE" "ZNF337 WILD-TYPE" "ZNF337 WILD-TYPE" "ZNF337 WILD-TYPE" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"ZNF337 WILD-TYPE" "ZNF337 WILD-TYPE" "ZNF337 WILD-TYPE" "ZNF337 WILD-TYPE" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
"ZNF337 WILD-TYPE"   "ZNF337 MUTATED" "ZNF337 WILD-TYPE" "ZNF337 WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
  "ZNF337 MUTATED" "ZNF337 WILD-TYPE" "ZNF337 WILD-TYPE" "ZNF337 WILD-TYPE" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"ZNF337 WILD-TYPE" "ZNF337 WILD-TYPE" "ZNF337 WILD-TYPE" "ZNF337 WILD-TYPE" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
"ZNF337 WILD-TYPE" "ZNF337 WILD-TYPE" "ZNF337 WILD-TYPE" "ZNF337 WILD-TYPE" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
  "ZNF337 MUTATED" "ZNF337 WILD-TYPE" "ZNF337 WILD-TYPE"   "ZNF337 MUTATED" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
"ZNF337 WILD-TYPE" "ZNF337 WILD-TYPE" "ZNF337 WILD-TYPE" "ZNF337 WILD-TYPE" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
  "ZNF337 MUTATED" "ZNF337 WILD-TYPE" "ZNF337 WILD-TYPE"   "ZNF337 MUTATED" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
  "ZNF337 MUTATED" "ZNF337 WILD-TYPE" "ZNF337 WILD-TYPE" "ZNF337 WILD-TYPE" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
"ZNF337 WILD-TYPE" "ZNF337 WILD-TYPE" "ZNF337 WILD-TYPE" "ZNF337 WILD-TYPE" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
"ZNF337 WILD-TYPE" "ZNF337 WILD-TYPE" "ZNF337 WILD-TYPE"   "ZNF337 MUTATED" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"ZNF337 WILD-TYPE" "ZNF337 WILD-TYPE" "ZNF337 WILD-TYPE" "ZNF337 WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"ZNF337 WILD-TYPE" "ZNF337 WILD-TYPE" "ZNF337 WILD-TYPE" "ZNF337 WILD-TYPE" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
"ZNF337 WILD-TYPE" "ZNF337 WILD-TYPE" "ZNF337 WILD-TYPE" "ZNF337 WILD-TYPE" 
      TCGA-US-A77J 
"ZNF337 WILD-TYPE" 
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
"ZNF337 WILD-TYPE" "ZNF337 WILD-TYPE" "ZNF337 WILD-TYPE"   "ZNF337 MUTATED" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"ZNF337 WILD-TYPE" "ZNF337 WILD-TYPE"   "ZNF337 MUTATED" "ZNF337 WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
"ZNF337 WILD-TYPE" "ZNF337 WILD-TYPE" "ZNF337 WILD-TYPE" "ZNF337 WILD-TYPE" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"ZNF337 WILD-TYPE" "ZNF337 WILD-TYPE" "ZNF337 WILD-TYPE" "ZNF337 WILD-TYPE" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
"ZNF337 WILD-TYPE"   "ZNF337 MUTATED" "ZNF337 WILD-TYPE" "ZNF337 WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
  "ZNF337 MUTATED" "ZNF337 WILD-TYPE" "ZNF337 WILD-TYPE" "ZNF337 WILD-TYPE" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"ZNF337 WILD-TYPE" "ZNF337 WILD-TYPE" "ZNF337 WILD-TYPE" "ZNF337 WILD-TYPE" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
"ZNF337 WILD-TYPE" "ZNF337 WILD-TYPE" "ZNF337 WILD-TYPE" "ZNF337 WILD-TYPE" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
  "ZNF337 MUTATED" "ZNF337 WILD-TYPE" "ZNF337 WILD-TYPE"   "ZNF337 MUTATED" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
"ZNF337 WILD-TYPE" "ZNF337 WILD-TYPE" "ZNF337 WILD-TYPE" "ZNF337 WILD-TYPE" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
  "ZNF337 MUTATED" "ZNF337 WILD-TYPE" "ZNF337 WILD-TYPE"   "ZNF337 MUTATED" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
  "ZNF337 MUTATED" "ZNF337 WILD-TYPE" "ZNF337 WILD-TYPE" "ZNF337 WILD-TYPE" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
"ZNF337 WILD-TYPE" "ZNF337 WILD-TYPE" "ZNF337 WILD-TYPE" "ZNF337 WILD-TYPE" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
"ZNF337 WILD-TYPE" "ZNF337 WILD-TYPE" "ZNF337 WILD-TYPE"   "ZNF337 MUTATED" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"ZNF337 WILD-TYPE" "ZNF337 WILD-TYPE" "ZNF337 WILD-TYPE" "ZNF337 WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"ZNF337 WILD-TYPE" "ZNF337 WILD-TYPE" "ZNF337 WILD-TYPE" "ZNF337 WILD-TYPE" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
"ZNF337 WILD-TYPE" "ZNF337 WILD-TYPE" "ZNF337 WILD-TYPE" "ZNF337 WILD-TYPE" 
      TCGA-US-A77J 
"ZNF337 WILD-TYPE" 
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
"ZNF337 WILD-TYPE" "ZNF337 WILD-TYPE" "ZNF337 WILD-TYPE"   "ZNF337 MUTATED" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"ZNF337 WILD-TYPE" "ZNF337 WILD-TYPE"   "ZNF337 MUTATED" "ZNF337 WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
"ZNF337 WILD-TYPE" "ZNF337 WILD-TYPE" "ZNF337 WILD-TYPE" "ZNF337 WILD-TYPE" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"ZNF337 WILD-TYPE" "ZNF337 WILD-TYPE" "ZNF337 WILD-TYPE" "ZNF337 WILD-TYPE" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
"ZNF337 WILD-TYPE"   "ZNF337 MUTATED" "ZNF337 WILD-TYPE" "ZNF337 WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
  "ZNF337 MUTATED" "ZNF337 WILD-TYPE" "ZNF337 WILD-TYPE" "ZNF337 WILD-TYPE" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"ZNF337 WILD-TYPE" "ZNF337 WILD-TYPE" "ZNF337 WILD-TYPE" "ZNF337 WILD-TYPE" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
"ZNF337 WILD-TYPE" "ZNF337 WILD-TYPE" "ZNF337 WILD-TYPE" "ZNF337 WILD-TYPE" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
  "ZNF337 MUTATED" "ZNF337 WILD-TYPE" "ZNF337 WILD-TYPE"   "ZNF337 MUTATED" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
"ZNF337 WILD-TYPE" "ZNF337 WILD-TYPE" "ZNF337 WILD-TYPE" "ZNF337 WILD-TYPE" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
  "ZNF337 MUTATED" "ZNF337 WILD-TYPE" "ZNF337 WILD-TYPE"   "ZNF337 MUTATED" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
  "ZNF337 MUTATED" "ZNF337 WILD-TYPE" "ZNF337 WILD-TYPE" "ZNF337 WILD-TYPE" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
"ZNF337 WILD-TYPE" "ZNF337 WILD-TYPE" "ZNF337 WILD-TYPE" "ZNF337 WILD-TYPE" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
"ZNF337 WILD-TYPE" "ZNF337 WILD-TYPE" "ZNF337 WILD-TYPE"   "ZNF337 MUTATED" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"ZNF337 WILD-TYPE" "ZNF337 WILD-TYPE" "ZNF337 WILD-TYPE" "ZNF337 WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"ZNF337 WILD-TYPE" "ZNF337 WILD-TYPE" "ZNF337 WILD-TYPE" "ZNF337 WILD-TYPE" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
"ZNF337 WILD-TYPE" "ZNF337 WILD-TYPE" "ZNF337 WILD-TYPE" "ZNF337 WILD-TYPE" 
      TCGA-US-A77J 
"ZNF337 WILD-TYPE" 
[1] "hr=" "1.3"
D101V2, continuous
                  vv
clus               STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  ZNF337 MUTATED          0        0         1         8         0        1
  ZNF337 WILD-TYPE        1        4        10        43         2        2
D101V3, multiclass
                  vv
clus               T1+T2 T3+T4
  ZNF337 MUTATED       0    10
  ZNF337 WILD-TYPE     6    56
D101V4, multiclass
       clus
vv      ZNF337 MUTATED ZNF337 WILD-TYPE
  T1+T2              0                6
  T3+T4             10               56
D101V5, binary
                  cls
clus                0  1
  ZNF337 MUTATED    2  8
  ZNF337 WILD-TYPE 15 46
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ZNF337 MUTATED      2    8
  ZNF337 WILD-TYPE   15   46
   clus
vv  ZNF337 MUTATED ZNF337 WILD-TYPE
  0              2               15
  1              8               46
                  vv
clus               M0 M1 MX
  ZNF337 MUTATED    6  1  3
  ZNF337 WILD-TYPE 33  2 27
D101V6, multiclass
    clus
vv   ZNF337 MUTATED ZNF337 WILD-TYPE
  M0              6               33
  M1              1                2
  MX              3               27
D101V7, binary
                  cls
clus                0  1
  ZNF337 MUTATED    6  4
  ZNF337 WILD-TYPE 30 32
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ZNF337 MUTATED      6    4
  ZNF337 WILD-TYPE   30   32
        clus
vv       ZNF337 MUTATED ZNF337 WILD-TYPE
  FEMALE              6               30
  MALE                4               32
                  vv
clus               PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  ZNF337 MUTATED                                     9
  ZNF337 WILD-TYPE                                  56
                  vv
clus               PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  ZNF337 MUTATED                                       1
  ZNF337 WILD-TYPE                                     3
                  vv
clus               PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  ZNF337 MUTATED                                                  0
  ZNF337 WILD-TYPE                                                2
D101V8, multiclass
                                                  clus
vv                                                 ZNF337 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                           9
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                         1
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA              0
                                                  clus
vv                                                 ZNF337 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                            56
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                           3
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                2
D101V9, continuous
D101V10, continuous
                  vv
clus               R0 R1 RX
  ZNF337 MUTATED    5  5  0
  ZNF337 WILD-TYPE 37 19  2
D101V11, multiclass
    clus
vv   ZNF337 MUTATED ZNF337 WILD-TYPE
  R0              5               37
  R1              5               19
  RX              0                2
D101V12, continuous

Clustering(102) Variable = NGEF MUTATION ANALYSIS
D102V1, survival
                sevent
clus2             0  1
  NGEF MUTATED    3  3
  NGEF WILD-TYPE 37 26
  NGEF MUTATED NGEF WILD-TYPE 
             6             63 
  NGEF MUTATED NGEF WILD-TYPE 
             3             26 
$`NGEF MUTATED`
TCGA-F2-6879 TCGA-F2-A44G TCGA-FB-A4P5 TCGA-FB-A545 TCGA-HZ-8002 TCGA-HZ-8636 
       10.98         5.03         0.13        12.66         0.79         0.16 

$`NGEF WILD-TYPE`
TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44H TCGA-FB-A4P6 TCGA-FB-A5VM 
        9.70        11.84         7.10        19.27        11.93         2.47 
TCGA-FB-A78T TCGA-FB-A7DR TCGA-FZ-5920 TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 
        0.03         5.46         2.01        36.20        20.81        12.89 
TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7922 
        7.66        13.02         7.89         0.92         0.66         0.13 
TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8003 
        0.26        12.13        11.87         0.26         0.62         0.69 
TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H 
        3.95         0.92         0.53         2.99         0.76         0.95 
TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 
        6.38         1.51        11.41        49.38         4.77        21.90 
TCGA-IB-7649 TCGA-IB-7651 TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 
       15.35        19.82        15.65        27.98         4.04         3.62 
TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-7897 
       43.79        15.81        19.66        16.04         3.85        15.98 
TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS 
        0.56        17.16        10.82         9.86         7.20        15.12 
TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W TCGA-PZ-A5RE TCGA-Q3-A5QY 
        0.26         1.35         4.18         3.62         8.12        13.68 
TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
       16.80        14.14        18.67 

  NGEF MUTATED NGEF WILD-TYPE 
          0.13           0.03 
  NGEF MUTATED NGEF WILD-TYPE 
         12.66          49.38 
  NGEF MUTATED NGEF WILD-TYPE 
          2.91           7.89 
[1] "0.1 - 12.7 (2.9)" "0.0 - 49.4 (7.9)"
    TCGA-F2-6879     TCGA-F2-6880     TCGA-F2-7273     TCGA-F2-7276 
  "NGEF MUTATED" "NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" 
    TCGA-F2-A44G     TCGA-F2-A44H     TCGA-FB-A4P5     TCGA-FB-A4P6 
  "NGEF MUTATED" "NGEF WILD-TYPE"   "NGEF MUTATED" "NGEF WILD-TYPE" 
    TCGA-FB-A545     TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-FB-A7DR 
  "NGEF MUTATED" "NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" 
    TCGA-FZ-5920     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-H6-8124 
"NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" 
    TCGA-H6-A45N     TCGA-H8-A6C1     TCGA-HZ-7289     TCGA-HZ-7918 
"NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" 
    TCGA-HZ-7919     TCGA-HZ-7922     TCGA-HZ-7923     TCGA-HZ-7924 
"NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" 
    TCGA-HZ-7925     TCGA-HZ-7926     TCGA-HZ-8001     TCGA-HZ-8002 
"NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE"   "NGEF MUTATED" 
    TCGA-HZ-8003     TCGA-HZ-8005     TCGA-HZ-8315     TCGA-HZ-8317 
"NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" 
    TCGA-HZ-8636     TCGA-HZ-8638     TCGA-HZ-A49G     TCGA-HZ-A49H 
  "NGEF MUTATED" "NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" 
    TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-IB-7644     TCGA-IB-7645 
"NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" 
    TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7651 
"NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887 
"NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" 
    TCGA-IB-7888     TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891 
"NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" 
    TCGA-IB-7893     TCGA-IB-7897     TCGA-IB-8126     TCGA-IB-8127 
"NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" 
    TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS 
"NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" 
    TCGA-IB-A5ST     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
"NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" 
    TCGA-PZ-A5RE     TCGA-Q3-A5QY     TCGA-US-A779     TCGA-US-A77E 
"NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" 
    TCGA-US-A77J 
"NGEF WILD-TYPE" 
    TCGA-F2-6879     TCGA-F2-6880     TCGA-F2-7273     TCGA-F2-7276 
  "NGEF MUTATED" "NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" 
    TCGA-F2-A44G     TCGA-F2-A44H     TCGA-FB-A4P5     TCGA-FB-A4P6 
  "NGEF MUTATED" "NGEF WILD-TYPE"   "NGEF MUTATED" "NGEF WILD-TYPE" 
    TCGA-FB-A545     TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-FB-A7DR 
  "NGEF MUTATED" "NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" 
    TCGA-FZ-5920     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-H6-8124 
"NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" 
    TCGA-H6-A45N     TCGA-H8-A6C1     TCGA-HZ-7289     TCGA-HZ-7918 
"NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" 
    TCGA-HZ-7919     TCGA-HZ-7922     TCGA-HZ-7923     TCGA-HZ-7924 
"NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" 
    TCGA-HZ-7925     TCGA-HZ-7926     TCGA-HZ-8001     TCGA-HZ-8002 
"NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE"   "NGEF MUTATED" 
    TCGA-HZ-8003     TCGA-HZ-8005     TCGA-HZ-8315     TCGA-HZ-8317 
"NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" 
    TCGA-HZ-8636     TCGA-HZ-8638     TCGA-HZ-A49G     TCGA-HZ-A49H 
  "NGEF MUTATED" "NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" 
    TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-IB-7644     TCGA-IB-7645 
"NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" 
    TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7651 
"NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887 
"NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" 
    TCGA-IB-7888     TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891 
"NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" 
    TCGA-IB-7893     TCGA-IB-7897     TCGA-IB-8126     TCGA-IB-8127 
"NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" 
    TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS 
"NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" 
    TCGA-IB-A5ST     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
"NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" 
    TCGA-PZ-A5RE     TCGA-Q3-A5QY     TCGA-US-A779     TCGA-US-A77E 
"NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" 
    TCGA-US-A77J 
"NGEF WILD-TYPE" 
    TCGA-F2-6879     TCGA-F2-6880     TCGA-F2-7273     TCGA-F2-7276 
  "NGEF MUTATED" "NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" 
    TCGA-F2-A44G     TCGA-F2-A44H     TCGA-FB-A4P5     TCGA-FB-A4P6 
  "NGEF MUTATED" "NGEF WILD-TYPE"   "NGEF MUTATED" "NGEF WILD-TYPE" 
    TCGA-FB-A545     TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-FB-A7DR 
  "NGEF MUTATED" "NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" 
    TCGA-FZ-5920     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-H6-8124 
"NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" 
    TCGA-H6-A45N     TCGA-H8-A6C1     TCGA-HZ-7289     TCGA-HZ-7918 
"NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" 
    TCGA-HZ-7919     TCGA-HZ-7922     TCGA-HZ-7923     TCGA-HZ-7924 
"NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" 
    TCGA-HZ-7925     TCGA-HZ-7926     TCGA-HZ-8001     TCGA-HZ-8002 
"NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE"   "NGEF MUTATED" 
    TCGA-HZ-8003     TCGA-HZ-8005     TCGA-HZ-8315     TCGA-HZ-8317 
"NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" 
    TCGA-HZ-8636     TCGA-HZ-8638     TCGA-HZ-A49G     TCGA-HZ-A49H 
  "NGEF MUTATED" "NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" 
    TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-IB-7644     TCGA-IB-7645 
"NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" 
    TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7651 
"NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887 
"NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" 
    TCGA-IB-7888     TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891 
"NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" 
    TCGA-IB-7893     TCGA-IB-7897     TCGA-IB-8126     TCGA-IB-8127 
"NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" 
    TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS 
"NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" 
    TCGA-IB-A5ST     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
"NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" 
    TCGA-PZ-A5RE     TCGA-Q3-A5QY     TCGA-US-A779     TCGA-US-A77E 
"NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" 
    TCGA-US-A77J 
"NGEF WILD-TYPE" 
[1] "hr=" "3.8"
D102V2, continuous
                vv
clus             STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  NGEF MUTATED          0        0         0         5         0        1
  NGEF WILD-TYPE        1        4        11        46         2        2
D102V3, multiclass
                vv
clus             T1+T2 T3+T4
  NGEF MUTATED       0     6
  NGEF WILD-TYPE     6    60
D102V4, multiclass
       clus
vv      NGEF MUTATED NGEF WILD-TYPE
  T1+T2            0              6
  T3+T4            6             60
D102V5, binary
                cls
clus              0  1
  NGEF MUTATED    1  5
  NGEF WILD-TYPE 16 49
[1] "tbl2"
                cls
clus             [,1] [,2]
  NGEF MUTATED      1    5
  NGEF WILD-TYPE   16   49
   clus
vv  NGEF MUTATED NGEF WILD-TYPE
  0            1             16
  1            5             49
                vv
clus             M0 M1 MX
  NGEF MUTATED    3  1  2
  NGEF WILD-TYPE 36  2 28
D102V6, multiclass
    clus
vv   NGEF MUTATED NGEF WILD-TYPE
  M0            3             36
  M1            1              2
  MX            2             28
D102V7, binary
                cls
clus              0  1
  NGEF MUTATED    4  2
  NGEF WILD-TYPE 32 34
[1] "tbl2"
                cls
clus             [,1] [,2]
  NGEF MUTATED      4    2
  NGEF WILD-TYPE   32   34
        clus
vv       NGEF MUTATED NGEF WILD-TYPE
  FEMALE            4             32
  MALE              2             34
                vv
clus             PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  NGEF MUTATED                                     5
  NGEF WILD-TYPE                                  60
                vv
clus             PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  NGEF MUTATED                                       0
  NGEF WILD-TYPE                                     4
                vv
clus             PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  NGEF MUTATED                                                  0
  NGEF WILD-TYPE                                                2
D102V8, multiclass
                                                  clus
vv                                                 NGEF MUTATED NGEF WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                         5             60
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                       0              4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA            0              2
D102V9, continuous
[1] "Remove cluster labels:" "NGEF MUTATED"          
clus
  NGEF MUTATED NGEF WILD-TYPE 
             1             21 
    TCGA-F2-6880     TCGA-FB-A4P6     TCGA-FB-A5VM     TCGA-FB-A78T 
"NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" 
    TCGA-FB-A7DR     TCGA-H6-8124     TCGA-H6-A45N     TCGA-H8-A6C1 
"NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" 
    TCGA-IB-7644     TCGA-IB-7649     TCGA-IB-7651     TCGA-IB-7885 
"NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" 
    TCGA-IB-7886     TCGA-IB-7887     TCGA-IB-7891     TCGA-IB-8126 
"NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" 
    TCGA-IB-8127     TCGA-IB-A5SS     TCGA-IB-A6UG     TCGA-LB-A7SX 
"NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" 
    TCGA-OE-A75W 
"NGEF WILD-TYPE" 
D102V10, continuous
[1] "Remove cluster labels:" "NGEF MUTATED"          
clus
  NGEF MUTATED NGEF WILD-TYPE 
             1             18 
    TCGA-FB-A4P6     TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-FB-A7DR 
"NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" 
    TCGA-H6-8124     TCGA-H8-A6C1     TCGA-IB-7644     TCGA-IB-7649 
"NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" 
    TCGA-IB-7651     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7891 
"NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" 
    TCGA-IB-8126     TCGA-IB-8127     TCGA-IB-A5SS     TCGA-IB-A6UG 
"NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" "NGEF WILD-TYPE" 
    TCGA-LB-A7SX     TCGA-OE-A75W 
"NGEF WILD-TYPE" "NGEF WILD-TYPE" 
                vv
clus             R0 R1 RX
  NGEF MUTATED    3  2  0
  NGEF WILD-TYPE 39 22  2
D102V11, multiclass
    clus
vv   NGEF MUTATED NGEF WILD-TYPE
  R0            3             39
  R1            2             22
  RX            0              2
D102V12, continuous

Clustering(103) Variable = BCL2L1 MUTATION ANALYSIS
D103V1, survival
                  sevent
clus2               0  1
  BCL2L1 MUTATED    4  2
  BCL2L1 WILD-TYPE 36 27
  BCL2L1 MUTATED BCL2L1 WILD-TYPE 
               6               63 
  BCL2L1 MUTATED BCL2L1 WILD-TYPE 
               2               27 
$`BCL2L1 MUTATED`
TCGA-HZ-7289 TCGA-HZ-7924 TCGA-HZ-8002 TCGA-IB-7647 TCGA-IB-7893 TCGA-IB-8126 
        7.89        12.13         0.79        21.90         3.85         0.56 

$`BCL2L1 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P5 TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR 
        0.13        11.93        12.66         2.47         0.03         5.46 
TCGA-FZ-5920 TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 
        2.01        36.20        20.81        12.89         7.66        13.02 
TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7925 TCGA-HZ-7926 
        0.92         0.66         0.13         0.26        11.87         0.26 
TCGA-HZ-8001 TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8636 
        0.62         0.69         3.95         0.92         0.53         0.16 
TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 
        2.99         0.76         0.95         6.38         1.51        11.41 
TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7649 TCGA-IB-7651 TCGA-IB-7652 TCGA-IB-7885 
       49.38         4.77        15.35        19.82        15.65        27.98 
TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 
        4.04         3.62        43.79        15.81        19.66        16.04 
TCGA-IB-7897 TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS 
       15.98        17.16        10.82         9.86         7.20        15.12 
TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W TCGA-PZ-A5RE TCGA-Q3-A5QY 
        0.26         1.35         4.18         3.62         8.12        13.68 
TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
       16.80        14.14        18.67 

  BCL2L1 MUTATED BCL2L1 WILD-TYPE 
            0.56             0.03 
  BCL2L1 MUTATED BCL2L1 WILD-TYPE 
           21.90            49.38 
  BCL2L1 MUTATED BCL2L1 WILD-TYPE 
            5.87             7.66 
[1] "0.6 - 21.9 (5.9)" "0.0 - 49.4 (7.7)"
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
"BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
"BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
"BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE"   "BCL2L1 MUTATED" "BCL2L1 WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
"BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE"   "BCL2L1 MUTATED" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE"   "BCL2L1 MUTATED" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
"BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
"BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
"BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
"BCL2L1 WILD-TYPE"   "BCL2L1 MUTATED" "BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
"BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
"BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
  "BCL2L1 MUTATED" "BCL2L1 WILD-TYPE"   "BCL2L1 MUTATED" "BCL2L1 WILD-TYPE" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
"BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" 
      TCGA-US-A77J 
"BCL2L1 WILD-TYPE" 
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
"BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
"BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
"BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE"   "BCL2L1 MUTATED" "BCL2L1 WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
"BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE"   "BCL2L1 MUTATED" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE"   "BCL2L1 MUTATED" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
"BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
"BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
"BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
"BCL2L1 WILD-TYPE"   "BCL2L1 MUTATED" "BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
"BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
"BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
  "BCL2L1 MUTATED" "BCL2L1 WILD-TYPE"   "BCL2L1 MUTATED" "BCL2L1 WILD-TYPE" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
"BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" 
      TCGA-US-A77J 
"BCL2L1 WILD-TYPE" 
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
"BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
"BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
"BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE"   "BCL2L1 MUTATED" "BCL2L1 WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
"BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE"   "BCL2L1 MUTATED" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE"   "BCL2L1 MUTATED" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
"BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
"BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
"BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
"BCL2L1 WILD-TYPE"   "BCL2L1 MUTATED" "BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
"BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
"BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
  "BCL2L1 MUTATED" "BCL2L1 WILD-TYPE"   "BCL2L1 MUTATED" "BCL2L1 WILD-TYPE" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
"BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" 
      TCGA-US-A77J 
"BCL2L1 WILD-TYPE" 
[1] "hr=" "1.2"
D103V2, continuous
                  vv
clus               STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  BCL2L1 MUTATED          0        0         2         3         1        0
  BCL2L1 WILD-TYPE        1        4         9        48         1        3
D103V3, multiclass
                  vv
clus               T1+T2 T3+T4
  BCL2L1 MUTATED       0     6
  BCL2L1 WILD-TYPE     6    60
D103V4, multiclass
       clus
vv      BCL2L1 MUTATED BCL2L1 WILD-TYPE
  T1+T2              0                6
  T3+T4              6               60
D103V5, binary
                  cls
clus                0  1
  BCL2L1 MUTATED    2  4
  BCL2L1 WILD-TYPE 15 50
[1] "tbl2"
                  cls
clus               [,1] [,2]
  BCL2L1 MUTATED      2    4
  BCL2L1 WILD-TYPE   15   50
   clus
vv  BCL2L1 MUTATED BCL2L1 WILD-TYPE
  0              2               15
  1              4               50
                  vv
clus               M0 M1 MX
  BCL2L1 MUTATED    3  0  3
  BCL2L1 WILD-TYPE 36  3 27
D103V6, multiclass
    clus
vv   BCL2L1 MUTATED BCL2L1 WILD-TYPE
  M0              3               36
  M1              0                3
  MX              3               27
D103V7, binary
                  cls
clus                0  1
  BCL2L1 MUTATED    3  3
  BCL2L1 WILD-TYPE 33 33
[1] "tbl2"
                  cls
clus               [,1] [,2]
  BCL2L1 MUTATED      3    3
  BCL2L1 WILD-TYPE   33   33
        clus
vv       BCL2L1 MUTATED BCL2L1 WILD-TYPE
  FEMALE              3               33
  MALE                3               33
                  vv
clus               PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  BCL2L1 MUTATED                                     5
  BCL2L1 WILD-TYPE                                  60
                  vv
clus               PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  BCL2L1 MUTATED                                       1
  BCL2L1 WILD-TYPE                                     3
                  vv
clus               PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  BCL2L1 MUTATED                                                  0
  BCL2L1 WILD-TYPE                                                2
D103V8, multiclass
                                                  clus
vv                                                 BCL2L1 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                           5
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                         1
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA              0
                                                  clus
vv                                                 BCL2L1 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                            60
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                           3
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                2
D103V9, continuous
[1] "Remove cluster labels:" "BCL2L1 MUTATED"        
clus
  BCL2L1 MUTATED BCL2L1 WILD-TYPE 
               1               21 
      TCGA-F2-6880       TCGA-FB-A4P5       TCGA-FB-A4P6       TCGA-FB-A5VM 
"BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" 
      TCGA-FB-A78T       TCGA-FB-A7DR       TCGA-H6-8124       TCGA-H6-A45N 
"BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" 
      TCGA-H8-A6C1       TCGA-IB-7644       TCGA-IB-7649       TCGA-IB-7651 
"BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" 
      TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887       TCGA-IB-7891 
"BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" 
      TCGA-IB-8127       TCGA-IB-A5SS       TCGA-IB-A6UG       TCGA-LB-A7SX 
"BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" 
      TCGA-OE-A75W 
"BCL2L1 WILD-TYPE" 
D103V10, continuous
[1] "Remove cluster labels:" "BCL2L1 MUTATED"        
clus
  BCL2L1 MUTATED BCL2L1 WILD-TYPE 
               1               18 
      TCGA-FB-A4P5       TCGA-FB-A4P6       TCGA-FB-A5VM       TCGA-FB-A78T 
"BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" 
      TCGA-FB-A7DR       TCGA-H6-8124       TCGA-H8-A6C1       TCGA-IB-7644 
"BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" 
      TCGA-IB-7649       TCGA-IB-7651       TCGA-IB-7885       TCGA-IB-7886 
"BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" 
      TCGA-IB-7891       TCGA-IB-8127       TCGA-IB-A5SS       TCGA-IB-A6UG 
"BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" 
      TCGA-LB-A7SX       TCGA-OE-A75W 
"BCL2L1 WILD-TYPE" "BCL2L1 WILD-TYPE" 
                  vv
clus               R0 R1 RX
  BCL2L1 MUTATED    3  2  1
  BCL2L1 WILD-TYPE 39 22  1
D103V11, multiclass
    clus
vv   BCL2L1 MUTATED BCL2L1 WILD-TYPE
  R0              3               39
  R1              2               22
  RX              1                1
D103V12, continuous

Clustering(104) Variable = RBM15B MUTATION ANALYSIS
D104V1, survival
                  sevent
clus2               0  1
  RBM15B MUTATED    5  3
  RBM15B WILD-TYPE 35 26
  RBM15B MUTATED RBM15B WILD-TYPE 
               8               61 
  RBM15B MUTATED RBM15B WILD-TYPE 
               3               26 
$`RBM15B MUTATED`
TCGA-FB-A545 TCGA-H6-A45N TCGA-HZ-7919 TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 
       12.66         7.66         0.66         0.69         3.95         0.92 
TCGA-IB-7888 TCGA-IB-8127 
       43.79        17.16 

$`RBM15B WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P5 TCGA-FB-A4P6 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR TCGA-FZ-5920 
        0.13        11.93         2.47         0.03         5.46         2.01 
TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 TCGA-H8-A6C1 TCGA-HZ-7289 TCGA-HZ-7918 
       36.20        20.81        12.89        13.02         7.89         0.92 
TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8001 
        0.13         0.26        12.13        11.87         0.26         0.62 
TCGA-HZ-8002 TCGA-HZ-8317 TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H 
        0.79         0.53         0.16         2.99         0.76         0.95 
TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 
        6.38         1.51        11.41        49.38         4.77        21.90 
TCGA-IB-7649 TCGA-IB-7651 TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 
       15.35        19.82        15.65        27.98         4.04         3.62 
TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-8126 
       15.81        19.66        16.04         3.85        15.98         0.56 
TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG 
       10.82         9.86         7.20        15.12         0.26         1.35 
TCGA-LB-A7SX TCGA-OE-A75W TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E 
        4.18         3.62         8.12        13.68        16.80        14.14 
TCGA-US-A77J 
       18.67 

  RBM15B MUTATED RBM15B WILD-TYPE 
            0.66             0.03 
  RBM15B MUTATED RBM15B WILD-TYPE 
           43.79            49.38 
  RBM15B MUTATED RBM15B WILD-TYPE 
           5.805            7.890 
[1] "0.7 - 43.8 (5.8)" "0.0 - 49.4 (7.9)"
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
"RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
  "RBM15B MUTATED" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
  "RBM15B MUTATED" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
  "RBM15B MUTATED" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
  "RBM15B MUTATED"   "RBM15B MUTATED"   "RBM15B MUTATED" "RBM15B WILD-TYPE" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
"RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
"RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
"RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
"RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
  "RBM15B MUTATED" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
"RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE"   "RBM15B MUTATED" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
"RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" 
      TCGA-US-A77J 
"RBM15B WILD-TYPE" 
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
"RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
  "RBM15B MUTATED" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
  "RBM15B MUTATED" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
  "RBM15B MUTATED" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
  "RBM15B MUTATED"   "RBM15B MUTATED"   "RBM15B MUTATED" "RBM15B WILD-TYPE" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
"RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
"RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
"RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
"RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
  "RBM15B MUTATED" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
"RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE"   "RBM15B MUTATED" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
"RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" 
      TCGA-US-A77J 
"RBM15B WILD-TYPE" 
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
"RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
  "RBM15B MUTATED" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
  "RBM15B MUTATED" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
  "RBM15B MUTATED" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
  "RBM15B MUTATED"   "RBM15B MUTATED"   "RBM15B MUTATED" "RBM15B WILD-TYPE" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
"RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
"RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
"RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
"RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
  "RBM15B MUTATED" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
"RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE"   "RBM15B MUTATED" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
"RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" 
      TCGA-US-A77J 
"RBM15B WILD-TYPE" 
[1] "hr=" "1.4"
D104V2, continuous
                  vv
clus               STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  RBM15B MUTATED          0        0         2         6         0        0
  RBM15B WILD-TYPE        1        4         9        45         2        3
D104V3, multiclass
                  vv
clus               T1+T2 T3+T4
  RBM15B MUTATED       0     8
  RBM15B WILD-TYPE     6    58
D104V4, multiclass
       clus
vv      RBM15B MUTATED RBM15B WILD-TYPE
  T1+T2              0                6
  T3+T4              8               58
D104V5, binary
                  cls
clus                0  1
  RBM15B MUTATED    2  6
  RBM15B WILD-TYPE 15 48
[1] "tbl2"
                  cls
clus               [,1] [,2]
  RBM15B MUTATED      2    6
  RBM15B WILD-TYPE   15   48
   clus
vv  RBM15B MUTATED RBM15B WILD-TYPE
  0              2               15
  1              6               48
                  vv
clus               M0 M1 MX
  RBM15B MUTATED    4  0  4
  RBM15B WILD-TYPE 35  3 26
D104V6, multiclass
    clus
vv   RBM15B MUTATED RBM15B WILD-TYPE
  M0              4               35
  M1              0                3
  MX              4               26
D104V7, binary
                  cls
clus                0  1
  RBM15B MUTATED    6  2
  RBM15B WILD-TYPE 30 34
[1] "tbl2"
                  cls
clus               [,1] [,2]
  RBM15B MUTATED      6    2
  RBM15B WILD-TYPE   30   34
        clus
vv       RBM15B MUTATED RBM15B WILD-TYPE
  FEMALE              6               30
  MALE                2               34
                  vv
clus               PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  RBM15B MUTATED                                     7
  RBM15B WILD-TYPE                                  58
                  vv
clus               PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  RBM15B MUTATED                                       1
  RBM15B WILD-TYPE                                     3
                  vv
clus               PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  RBM15B MUTATED                                                  0
  RBM15B WILD-TYPE                                                2
D104V8, multiclass
                                                  clus
vv                                                 RBM15B MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                           7
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                         1
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA              0
                                                  clus
vv                                                 RBM15B WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                            58
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                           3
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                2
D104V9, continuous
[1] "Remove cluster labels:" "RBM15B MUTATED"        
clus
  RBM15B MUTATED RBM15B WILD-TYPE 
               2               20 
      TCGA-F2-6880       TCGA-FB-A4P5       TCGA-FB-A4P6       TCGA-FB-A5VM 
"RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" 
      TCGA-FB-A78T       TCGA-FB-A7DR       TCGA-H6-8124       TCGA-H8-A6C1 
"RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" 
      TCGA-IB-7644       TCGA-IB-7649       TCGA-IB-7651       TCGA-IB-7885 
"RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" 
      TCGA-IB-7886       TCGA-IB-7887       TCGA-IB-7891       TCGA-IB-8126 
"RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" 
      TCGA-IB-A5SS       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" 
D104V10, continuous
[1] "Remove cluster labels:" "RBM15B MUTATED"        
clus
  RBM15B MUTATED RBM15B WILD-TYPE 
               1               18 
      TCGA-FB-A4P5       TCGA-FB-A4P6       TCGA-FB-A5VM       TCGA-FB-A78T 
"RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" 
      TCGA-FB-A7DR       TCGA-H6-8124       TCGA-H8-A6C1       TCGA-IB-7644 
"RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" 
      TCGA-IB-7649       TCGA-IB-7651       TCGA-IB-7885       TCGA-IB-7886 
"RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" 
      TCGA-IB-7891       TCGA-IB-8126       TCGA-IB-A5SS       TCGA-IB-A6UG 
"RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" "RBM15B WILD-TYPE" 
      TCGA-LB-A7SX       TCGA-OE-A75W 
"RBM15B WILD-TYPE" "RBM15B WILD-TYPE" 
                  vv
clus               R0 R1 RX
  RBM15B MUTATED    2  4  0
  RBM15B WILD-TYPE 40 20  2
D104V11, multiclass
    clus
vv   RBM15B MUTATED RBM15B WILD-TYPE
  R0              2               40
  R1              4               20
  RX              0                2
D104V12, continuous

Clustering(105) Variable = THBS4 MUTATION ANALYSIS
D105V1, survival
                 sevent
clus2              0  1
  THBS4 MUTATED   11  6
  THBS4 WILD-TYPE 29 23
  THBS4 MUTATED THBS4 WILD-TYPE 
             17              52 
  THBS4 MUTATED THBS4 WILD-TYPE 
              6              23 
$`THBS4 MUTATED`
TCGA-F2-7276 TCGA-F2-A44H TCGA-FB-A4P6 TCGA-H6-8124 TCGA-HZ-7919 TCGA-HZ-8001 
        7.10        19.27        11.93        12.89         0.66         0.62 
TCGA-HZ-8005 TCGA-HZ-8317 TCGA-HZ-A49H TCGA-IB-7647 TCGA-IB-7651 TCGA-IB-7885 
        3.95         0.53         0.95        21.90        19.82        27.98 
TCGA-IB-7887 TCGA-IB-7891 TCGA-IB-8126 TCGA-IB-A5SQ TCGA-OE-A75W 
        3.62        16.04         0.56         7.20         3.62 

$`THBS4 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-A44G TCGA-FB-A4P5 TCGA-FB-A545 
       10.98         9.70        11.84         5.03         0.13        12.66 
TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR TCGA-FZ-5920 TCGA-FZ-5922 TCGA-FZ-5923 
        2.47         0.03         5.46         2.01        36.20        20.81 
TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-7922 TCGA-HZ-7923 
        7.66        13.02         7.89         0.92         0.13         0.26 
TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8315 
       12.13        11.87         0.26         0.79         0.69         0.92 
TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 
        0.16         2.99         0.76         6.38         1.51        11.41 
TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7649 TCGA-IB-7652 TCGA-IB-7886 TCGA-IB-7888 
       49.38         4.77        15.35        15.65         4.04        43.79 
TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-8127 TCGA-IB-A5SO 
       15.81        19.66         3.85        15.98        17.16        10.82 
TCGA-IB-A5SP TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX TCGA-PZ-A5RE 
        9.86        15.12         0.26         1.35         4.18         8.12 
TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
       13.68        16.80        14.14        18.67 

  THBS4 MUTATED THBS4 WILD-TYPE 
           0.53            0.03 
  THBS4 MUTATED THBS4 WILD-TYPE 
          27.98           49.38 
  THBS4 MUTATED THBS4 WILD-TYPE 
          7.100           8.005 
[1] "0.5 - 28.0 (7.1)" "0.0 - 49.4 (8.0)"
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"THBS4 WILD-TYPE" "THBS4 WILD-TYPE" "THBS4 WILD-TYPE"   "THBS4 MUTATED" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"THBS4 WILD-TYPE"   "THBS4 MUTATED" "THBS4 WILD-TYPE"   "THBS4 MUTATED" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"THBS4 WILD-TYPE" "THBS4 WILD-TYPE" "THBS4 WILD-TYPE" "THBS4 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"THBS4 WILD-TYPE" "THBS4 WILD-TYPE" "THBS4 WILD-TYPE"   "THBS4 MUTATED" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"THBS4 WILD-TYPE" "THBS4 WILD-TYPE" "THBS4 WILD-TYPE" "THBS4 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
  "THBS4 MUTATED" "THBS4 WILD-TYPE" "THBS4 WILD-TYPE" "THBS4 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"THBS4 WILD-TYPE" "THBS4 WILD-TYPE"   "THBS4 MUTATED" "THBS4 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"THBS4 WILD-TYPE"   "THBS4 MUTATED" "THBS4 WILD-TYPE"   "THBS4 MUTATED" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"THBS4 WILD-TYPE" "THBS4 WILD-TYPE" "THBS4 WILD-TYPE"   "THBS4 MUTATED" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"THBS4 WILD-TYPE" "THBS4 WILD-TYPE" "THBS4 WILD-TYPE" "THBS4 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"THBS4 WILD-TYPE"   "THBS4 MUTATED" "THBS4 WILD-TYPE"   "THBS4 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"THBS4 WILD-TYPE"   "THBS4 MUTATED" "THBS4 WILD-TYPE"   "THBS4 MUTATED" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"THBS4 WILD-TYPE" "THBS4 WILD-TYPE" "THBS4 WILD-TYPE"   "THBS4 MUTATED" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"THBS4 WILD-TYPE" "THBS4 WILD-TYPE"   "THBS4 MUTATED" "THBS4 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"THBS4 WILD-TYPE" "THBS4 WILD-TYPE"   "THBS4 MUTATED" "THBS4 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"THBS4 WILD-TYPE" "THBS4 WILD-TYPE" "THBS4 WILD-TYPE"   "THBS4 MUTATED" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"THBS4 WILD-TYPE" "THBS4 WILD-TYPE" "THBS4 WILD-TYPE" "THBS4 WILD-TYPE" 
     TCGA-US-A77J 
"THBS4 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"THBS4 WILD-TYPE" "THBS4 WILD-TYPE" "THBS4 WILD-TYPE"   "THBS4 MUTATED" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"THBS4 WILD-TYPE"   "THBS4 MUTATED" "THBS4 WILD-TYPE"   "THBS4 MUTATED" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"THBS4 WILD-TYPE" "THBS4 WILD-TYPE" "THBS4 WILD-TYPE" "THBS4 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"THBS4 WILD-TYPE" "THBS4 WILD-TYPE" "THBS4 WILD-TYPE"   "THBS4 MUTATED" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"THBS4 WILD-TYPE" "THBS4 WILD-TYPE" "THBS4 WILD-TYPE" "THBS4 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
  "THBS4 MUTATED" "THBS4 WILD-TYPE" "THBS4 WILD-TYPE" "THBS4 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"THBS4 WILD-TYPE" "THBS4 WILD-TYPE"   "THBS4 MUTATED" "THBS4 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"THBS4 WILD-TYPE"   "THBS4 MUTATED" "THBS4 WILD-TYPE"   "THBS4 MUTATED" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"THBS4 WILD-TYPE" "THBS4 WILD-TYPE" "THBS4 WILD-TYPE"   "THBS4 MUTATED" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"THBS4 WILD-TYPE" "THBS4 WILD-TYPE" "THBS4 WILD-TYPE" "THBS4 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"THBS4 WILD-TYPE"   "THBS4 MUTATED" "THBS4 WILD-TYPE"   "THBS4 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"THBS4 WILD-TYPE"   "THBS4 MUTATED" "THBS4 WILD-TYPE"   "THBS4 MUTATED" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"THBS4 WILD-TYPE" "THBS4 WILD-TYPE" "THBS4 WILD-TYPE"   "THBS4 MUTATED" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"THBS4 WILD-TYPE" "THBS4 WILD-TYPE"   "THBS4 MUTATED" "THBS4 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"THBS4 WILD-TYPE" "THBS4 WILD-TYPE"   "THBS4 MUTATED" "THBS4 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"THBS4 WILD-TYPE" "THBS4 WILD-TYPE" "THBS4 WILD-TYPE"   "THBS4 MUTATED" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"THBS4 WILD-TYPE" "THBS4 WILD-TYPE" "THBS4 WILD-TYPE" "THBS4 WILD-TYPE" 
     TCGA-US-A77J 
"THBS4 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"THBS4 WILD-TYPE" "THBS4 WILD-TYPE" "THBS4 WILD-TYPE"   "THBS4 MUTATED" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"THBS4 WILD-TYPE"   "THBS4 MUTATED" "THBS4 WILD-TYPE"   "THBS4 MUTATED" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"THBS4 WILD-TYPE" "THBS4 WILD-TYPE" "THBS4 WILD-TYPE" "THBS4 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"THBS4 WILD-TYPE" "THBS4 WILD-TYPE" "THBS4 WILD-TYPE"   "THBS4 MUTATED" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"THBS4 WILD-TYPE" "THBS4 WILD-TYPE" "THBS4 WILD-TYPE" "THBS4 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
  "THBS4 MUTATED" "THBS4 WILD-TYPE" "THBS4 WILD-TYPE" "THBS4 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"THBS4 WILD-TYPE" "THBS4 WILD-TYPE"   "THBS4 MUTATED" "THBS4 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"THBS4 WILD-TYPE"   "THBS4 MUTATED" "THBS4 WILD-TYPE"   "THBS4 MUTATED" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"THBS4 WILD-TYPE" "THBS4 WILD-TYPE" "THBS4 WILD-TYPE"   "THBS4 MUTATED" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"THBS4 WILD-TYPE" "THBS4 WILD-TYPE" "THBS4 WILD-TYPE" "THBS4 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"THBS4 WILD-TYPE"   "THBS4 MUTATED" "THBS4 WILD-TYPE"   "THBS4 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"THBS4 WILD-TYPE"   "THBS4 MUTATED" "THBS4 WILD-TYPE"   "THBS4 MUTATED" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"THBS4 WILD-TYPE" "THBS4 WILD-TYPE" "THBS4 WILD-TYPE"   "THBS4 MUTATED" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"THBS4 WILD-TYPE" "THBS4 WILD-TYPE"   "THBS4 MUTATED" "THBS4 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"THBS4 WILD-TYPE" "THBS4 WILD-TYPE"   "THBS4 MUTATED" "THBS4 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"THBS4 WILD-TYPE" "THBS4 WILD-TYPE" "THBS4 WILD-TYPE"   "THBS4 MUTATED" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"THBS4 WILD-TYPE" "THBS4 WILD-TYPE" "THBS4 WILD-TYPE" "THBS4 WILD-TYPE" 
     TCGA-US-A77J 
"THBS4 WILD-TYPE" 
[1] "hr=" "1.3"
D105V2, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  THBS4 MUTATED          0        2         2        12         2        0
  THBS4 WILD-TYPE        1        2         9        39         0        3
D105V3, multiclass
                 vv
clus              T1+T2 T3+T4
  THBS4 MUTATED       2    16
  THBS4 WILD-TYPE     4    50
D105V4, multiclass
       clus
vv      THBS4 MUTATED THBS4 WILD-TYPE
  T1+T2             2               4
  T3+T4            16              50
D105V5, binary
                 cls
clus               0  1
  THBS4 MUTATED    5 13
  THBS4 WILD-TYPE 12 41
[1] "tbl2"
                 cls
clus              [,1] [,2]
  THBS4 MUTATED      5   13
  THBS4 WILD-TYPE   12   41
   clus
vv  THBS4 MUTATED THBS4 WILD-TYPE
  0             5              12
  1            13              41
                 vv
clus              M0 M1 MX
  THBS4 MUTATED   12  0  6
  THBS4 WILD-TYPE 27  3 24
D105V6, multiclass
    clus
vv   THBS4 MUTATED THBS4 WILD-TYPE
  M0            12              27
  M1             0               3
  MX             6              24
D105V7, binary
                 cls
clus               0  1
  THBS4 MUTATED   10  8
  THBS4 WILD-TYPE 26 28
[1] "tbl2"
                 cls
clus              [,1] [,2]
  THBS4 MUTATED     10    8
  THBS4 WILD-TYPE   26   28
        clus
vv       THBS4 MUTATED THBS4 WILD-TYPE
  FEMALE            10              26
  MALE               8              28
                 vv
clus              PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  THBS4 MUTATED                                    18
  THBS4 WILD-TYPE                                  47
                 vv
clus              PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  THBS4 MUTATED                                       0
  THBS4 WILD-TYPE                                     4
                 vv
clus              PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  THBS4 MUTATED                                                  0
  THBS4 WILD-TYPE                                                2
D105V8, multiclass
                                                  clus
vv                                                 THBS4 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                         18
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                        0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA             0
                                                  clus
vv                                                 THBS4 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                           47
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                          4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA               2
D105V9, continuous
D105V10, continuous
                 vv
clus              R0 R1 RX
  THBS4 MUTATED   11  6  0
  THBS4 WILD-TYPE 31 18  2
D105V11, multiclass
    clus
vv   THBS4 MUTATED THBS4 WILD-TYPE
  R0            11              31
  R1             6              18
  RX             0               2
D105V12, continuous

Clustering(106) Variable = PVRL1 MUTATION ANALYSIS
D106V1, survival
                 sevent
clus2              0  1
  PVRL1 MUTATED    6  5
  PVRL1 WILD-TYPE 34 24
  PVRL1 MUTATED PVRL1 WILD-TYPE 
             11              58 
  PVRL1 MUTATED PVRL1 WILD-TYPE 
              5              24 
$`PVRL1 MUTATED`
TCGA-F2-6880 TCGA-F2-7276 TCGA-F2-A44H TCGA-FB-A4P5 TCGA-H6-A45N TCGA-HZ-7919 
        9.70         7.10        19.27         0.13         7.66         0.66 
TCGA-HZ-7925 TCGA-HZ-8003 TCGA-HZ-A49H TCGA-IB-7646 TCGA-IB-7651 
       11.87         0.69         0.95         4.77        19.82 

$`PVRL1 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-7273 TCGA-F2-A44G TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM 
       10.98        11.84         5.03        11.93        12.66         2.47 
TCGA-FB-A78T TCGA-FB-A7DR TCGA-FZ-5920 TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 
        0.03         5.46         2.01        36.20        20.81        12.89 
TCGA-H8-A6C1 TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 
       13.02         7.89         0.92         0.13         0.26        12.13 
TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 
        0.26         0.62         0.79         3.95         0.92         0.53 
TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 
        0.16         2.99         0.76         6.38         1.51        11.41 
TCGA-IB-7645 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7886 
       49.38        21.90        15.35        15.65        27.98         4.04 
TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-7893 
        3.62        43.79        15.81        19.66        16.04         3.85 
TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ 
       15.98         0.56        17.16        10.82         9.86         7.20 
TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W TCGA-PZ-A5RE 
       15.12         0.26         1.35         4.18         3.62         8.12 
TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
       13.68        16.80        14.14        18.67 

  PVRL1 MUTATED PVRL1 WILD-TYPE 
           0.13            0.03 
  PVRL1 MUTATED PVRL1 WILD-TYPE 
          19.82           49.38 
  PVRL1 MUTATED PVRL1 WILD-TYPE 
          7.100           8.005 
[1] "0.1 - 19.8 (7.1)" "0.0 - 49.4 (8.0)"
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"PVRL1 WILD-TYPE"   "PVRL1 MUTATED" "PVRL1 WILD-TYPE"   "PVRL1 MUTATED" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"PVRL1 WILD-TYPE"   "PVRL1 MUTATED"   "PVRL1 MUTATED" "PVRL1 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"PVRL1 WILD-TYPE" "PVRL1 WILD-TYPE" "PVRL1 WILD-TYPE" "PVRL1 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"PVRL1 WILD-TYPE" "PVRL1 WILD-TYPE" "PVRL1 WILD-TYPE" "PVRL1 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
  "PVRL1 MUTATED" "PVRL1 WILD-TYPE" "PVRL1 WILD-TYPE" "PVRL1 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
  "PVRL1 MUTATED" "PVRL1 WILD-TYPE" "PVRL1 WILD-TYPE" "PVRL1 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
  "PVRL1 MUTATED" "PVRL1 WILD-TYPE" "PVRL1 WILD-TYPE" "PVRL1 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
  "PVRL1 MUTATED" "PVRL1 WILD-TYPE" "PVRL1 WILD-TYPE" "PVRL1 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"PVRL1 WILD-TYPE" "PVRL1 WILD-TYPE" "PVRL1 WILD-TYPE"   "PVRL1 MUTATED" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"PVRL1 WILD-TYPE" "PVRL1 WILD-TYPE" "PVRL1 WILD-TYPE" "PVRL1 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
  "PVRL1 MUTATED" "PVRL1 WILD-TYPE" "PVRL1 WILD-TYPE"   "PVRL1 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"PVRL1 WILD-TYPE" "PVRL1 WILD-TYPE" "PVRL1 WILD-TYPE" "PVRL1 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"PVRL1 WILD-TYPE" "PVRL1 WILD-TYPE" "PVRL1 WILD-TYPE" "PVRL1 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"PVRL1 WILD-TYPE" "PVRL1 WILD-TYPE" "PVRL1 WILD-TYPE" "PVRL1 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"PVRL1 WILD-TYPE" "PVRL1 WILD-TYPE" "PVRL1 WILD-TYPE" "PVRL1 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"PVRL1 WILD-TYPE" "PVRL1 WILD-TYPE" "PVRL1 WILD-TYPE" "PVRL1 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"PVRL1 WILD-TYPE" "PVRL1 WILD-TYPE" "PVRL1 WILD-TYPE" "PVRL1 WILD-TYPE" 
     TCGA-US-A77J 
"PVRL1 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"PVRL1 WILD-TYPE"   "PVRL1 MUTATED" "PVRL1 WILD-TYPE"   "PVRL1 MUTATED" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"PVRL1 WILD-TYPE"   "PVRL1 MUTATED"   "PVRL1 MUTATED" "PVRL1 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"PVRL1 WILD-TYPE" "PVRL1 WILD-TYPE" "PVRL1 WILD-TYPE" "PVRL1 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"PVRL1 WILD-TYPE" "PVRL1 WILD-TYPE" "PVRL1 WILD-TYPE" "PVRL1 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
  "PVRL1 MUTATED" "PVRL1 WILD-TYPE" "PVRL1 WILD-TYPE" "PVRL1 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
  "PVRL1 MUTATED" "PVRL1 WILD-TYPE" "PVRL1 WILD-TYPE" "PVRL1 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
  "PVRL1 MUTATED" "PVRL1 WILD-TYPE" "PVRL1 WILD-TYPE" "PVRL1 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
  "PVRL1 MUTATED" "PVRL1 WILD-TYPE" "PVRL1 WILD-TYPE" "PVRL1 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"PVRL1 WILD-TYPE" "PVRL1 WILD-TYPE" "PVRL1 WILD-TYPE"   "PVRL1 MUTATED" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"PVRL1 WILD-TYPE" "PVRL1 WILD-TYPE" "PVRL1 WILD-TYPE" "PVRL1 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
  "PVRL1 MUTATED" "PVRL1 WILD-TYPE" "PVRL1 WILD-TYPE"   "PVRL1 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"PVRL1 WILD-TYPE" "PVRL1 WILD-TYPE" "PVRL1 WILD-TYPE" "PVRL1 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"PVRL1 WILD-TYPE" "PVRL1 WILD-TYPE" "PVRL1 WILD-TYPE" "PVRL1 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"PVRL1 WILD-TYPE" "PVRL1 WILD-TYPE" "PVRL1 WILD-TYPE" "PVRL1 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"PVRL1 WILD-TYPE" "PVRL1 WILD-TYPE" "PVRL1 WILD-TYPE" "PVRL1 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"PVRL1 WILD-TYPE" "PVRL1 WILD-TYPE" "PVRL1 WILD-TYPE" "PVRL1 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"PVRL1 WILD-TYPE" "PVRL1 WILD-TYPE" "PVRL1 WILD-TYPE" "PVRL1 WILD-TYPE" 
     TCGA-US-A77J 
"PVRL1 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"PVRL1 WILD-TYPE"   "PVRL1 MUTATED" "PVRL1 WILD-TYPE"   "PVRL1 MUTATED" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"PVRL1 WILD-TYPE"   "PVRL1 MUTATED"   "PVRL1 MUTATED" "PVRL1 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"PVRL1 WILD-TYPE" "PVRL1 WILD-TYPE" "PVRL1 WILD-TYPE" "PVRL1 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"PVRL1 WILD-TYPE" "PVRL1 WILD-TYPE" "PVRL1 WILD-TYPE" "PVRL1 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
  "PVRL1 MUTATED" "PVRL1 WILD-TYPE" "PVRL1 WILD-TYPE" "PVRL1 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
  "PVRL1 MUTATED" "PVRL1 WILD-TYPE" "PVRL1 WILD-TYPE" "PVRL1 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
  "PVRL1 MUTATED" "PVRL1 WILD-TYPE" "PVRL1 WILD-TYPE" "PVRL1 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
  "PVRL1 MUTATED" "PVRL1 WILD-TYPE" "PVRL1 WILD-TYPE" "PVRL1 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"PVRL1 WILD-TYPE" "PVRL1 WILD-TYPE" "PVRL1 WILD-TYPE"   "PVRL1 MUTATED" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"PVRL1 WILD-TYPE" "PVRL1 WILD-TYPE" "PVRL1 WILD-TYPE" "PVRL1 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
  "PVRL1 MUTATED" "PVRL1 WILD-TYPE" "PVRL1 WILD-TYPE"   "PVRL1 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"PVRL1 WILD-TYPE" "PVRL1 WILD-TYPE" "PVRL1 WILD-TYPE" "PVRL1 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"PVRL1 WILD-TYPE" "PVRL1 WILD-TYPE" "PVRL1 WILD-TYPE" "PVRL1 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"PVRL1 WILD-TYPE" "PVRL1 WILD-TYPE" "PVRL1 WILD-TYPE" "PVRL1 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"PVRL1 WILD-TYPE" "PVRL1 WILD-TYPE" "PVRL1 WILD-TYPE" "PVRL1 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"PVRL1 WILD-TYPE" "PVRL1 WILD-TYPE" "PVRL1 WILD-TYPE" "PVRL1 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"PVRL1 WILD-TYPE" "PVRL1 WILD-TYPE" "PVRL1 WILD-TYPE" "PVRL1 WILD-TYPE" 
     TCGA-US-A77J 
"PVRL1 WILD-TYPE" 
[1] "hr=" "1.6"
D106V2, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  PVRL1 MUTATED          0        1         1        10         0        0
  PVRL1 WILD-TYPE        1        3        10        41         2        3
D106V3, multiclass
                 vv
clus              T1+T2 T3+T4
  PVRL1 MUTATED       1    11
  PVRL1 WILD-TYPE     5    55
D106V4, multiclass
       clus
vv      PVRL1 MUTATED PVRL1 WILD-TYPE
  T1+T2             1               5
  T3+T4            11              55
D106V5, binary
                 cls
clus               0  1
  PVRL1 MUTATED    2 10
  PVRL1 WILD-TYPE 15 44
[1] "tbl2"
                 cls
clus              [,1] [,2]
  PVRL1 MUTATED      2   10
  PVRL1 WILD-TYPE   15   44
   clus
vv  PVRL1 MUTATED PVRL1 WILD-TYPE
  0             2              15
  1            10              44
                 vv
clus              M0 M1 MX
  PVRL1 MUTATED    6  0  6
  PVRL1 WILD-TYPE 33  3 24
D106V6, multiclass
    clus
vv   PVRL1 MUTATED PVRL1 WILD-TYPE
  M0             6              33
  M1             0               3
  MX             6              24
D106V7, binary
                 cls
clus               0  1
  PVRL1 MUTATED    6  6
  PVRL1 WILD-TYPE 30 30
[1] "tbl2"
                 cls
clus              [,1] [,2]
  PVRL1 MUTATED      6    6
  PVRL1 WILD-TYPE   30   30
        clus
vv       PVRL1 MUTATED PVRL1 WILD-TYPE
  FEMALE             6              30
  MALE               6              30
                 vv
clus              PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  PVRL1 MUTATED                                    11
  PVRL1 WILD-TYPE                                  54
                 vv
clus              PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  PVRL1 MUTATED                                       1
  PVRL1 WILD-TYPE                                     3
                 vv
clus              PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  PVRL1 MUTATED                                                  0
  PVRL1 WILD-TYPE                                                2
D106V8, multiclass
                                                  clus
vv                                                 PVRL1 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                         11
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                        1
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA             0
                                                  clus
vv                                                 PVRL1 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                           54
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                          3
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA               2
D106V9, continuous
D106V10, continuous
[1] "Remove cluster labels:" "PVRL1 MUTATED"         
clus
  PVRL1 MUTATED PVRL1 WILD-TYPE 
              2              17 
     TCGA-FB-A4P6      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"PVRL1 WILD-TYPE" "PVRL1 WILD-TYPE" "PVRL1 WILD-TYPE" "PVRL1 WILD-TYPE" 
     TCGA-H6-8124      TCGA-H8-A6C1      TCGA-IB-7644      TCGA-IB-7649 
"PVRL1 WILD-TYPE" "PVRL1 WILD-TYPE" "PVRL1 WILD-TYPE" "PVRL1 WILD-TYPE" 
     TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7891      TCGA-IB-8126 
"PVRL1 WILD-TYPE" "PVRL1 WILD-TYPE" "PVRL1 WILD-TYPE" "PVRL1 WILD-TYPE" 
     TCGA-IB-8127      TCGA-IB-A5SS      TCGA-IB-A6UG      TCGA-LB-A7SX 
"PVRL1 WILD-TYPE" "PVRL1 WILD-TYPE" "PVRL1 WILD-TYPE" "PVRL1 WILD-TYPE" 
     TCGA-OE-A75W 
"PVRL1 WILD-TYPE" 
                 vv
clus              R0 R1 RX
  PVRL1 MUTATED    9  2  0
  PVRL1 WILD-TYPE 33 22  2
D106V11, multiclass
    clus
vv   PVRL1 MUTATED PVRL1 WILD-TYPE
  R0             9              33
  R1             2              22
  RX             0               2
D106V12, continuous

Clustering(107) Variable = PVRL2 MUTATION ANALYSIS
D107V1, survival
                 sevent
clus2              0  1
  PVRL2 MUTATED    7  3
  PVRL2 WILD-TYPE 33 26
  PVRL2 MUTATED PVRL2 WILD-TYPE 
             10              59 
  PVRL2 MUTATED PVRL2 WILD-TYPE 
              3              26 
$`PVRL2 MUTATED`
TCGA-FB-A545 TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-8002 TCGA-IB-7651 
       12.66         0.66         0.13         0.26         0.79        19.82 
TCGA-IB-7888 TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-8127 
       43.79        15.98         0.56        17.16 

$`PVRL2 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P5 TCGA-FB-A4P6 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR TCGA-FZ-5920 
        0.13        11.93         2.47         0.03         5.46         2.01 
TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7289 
       36.20        20.81        12.89         7.66        13.02         7.89 
TCGA-HZ-7918 TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8003 
        0.92        12.13        11.87         0.26         0.62         0.69 
TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G 
        3.95         0.92         0.53         0.16         2.99         0.76 
TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7646 
        0.95         6.38         1.51        11.41        49.38         4.77 
TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 
       21.90        15.35        15.65        27.98         4.04         3.62 
TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-A5SO TCGA-IB-A5SP 
       15.81        19.66        16.04         3.85        10.82         9.86 
TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W 
        7.20        15.12         0.26         1.35         4.18         3.62 
TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
        8.12        13.68        16.80        14.14        18.67 

  PVRL2 MUTATED PVRL2 WILD-TYPE 
           0.13            0.03 
  PVRL2 MUTATED PVRL2 WILD-TYPE 
          43.79           49.38 
  PVRL2 MUTATED PVRL2 WILD-TYPE 
          6.725           7.660 
[1] "0.1 - 43.8 (6.7)" "0.0 - 49.4 (7.7)"
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"PVRL2 WILD-TYPE" "PVRL2 WILD-TYPE" "PVRL2 WILD-TYPE" "PVRL2 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"PVRL2 WILD-TYPE" "PVRL2 WILD-TYPE" "PVRL2 WILD-TYPE" "PVRL2 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
  "PVRL2 MUTATED" "PVRL2 WILD-TYPE" "PVRL2 WILD-TYPE" "PVRL2 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"PVRL2 WILD-TYPE" "PVRL2 WILD-TYPE" "PVRL2 WILD-TYPE" "PVRL2 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"PVRL2 WILD-TYPE" "PVRL2 WILD-TYPE" "PVRL2 WILD-TYPE" "PVRL2 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
  "PVRL2 MUTATED"   "PVRL2 MUTATED"   "PVRL2 MUTATED" "PVRL2 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"PVRL2 WILD-TYPE" "PVRL2 WILD-TYPE" "PVRL2 WILD-TYPE"   "PVRL2 MUTATED" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"PVRL2 WILD-TYPE" "PVRL2 WILD-TYPE" "PVRL2 WILD-TYPE" "PVRL2 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"PVRL2 WILD-TYPE" "PVRL2 WILD-TYPE" "PVRL2 WILD-TYPE" "PVRL2 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"PVRL2 WILD-TYPE" "PVRL2 WILD-TYPE" "PVRL2 WILD-TYPE" "PVRL2 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"PVRL2 WILD-TYPE" "PVRL2 WILD-TYPE" "PVRL2 WILD-TYPE"   "PVRL2 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"PVRL2 WILD-TYPE" "PVRL2 WILD-TYPE" "PVRL2 WILD-TYPE" "PVRL2 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
  "PVRL2 MUTATED" "PVRL2 WILD-TYPE" "PVRL2 WILD-TYPE" "PVRL2 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"PVRL2 WILD-TYPE"   "PVRL2 MUTATED"   "PVRL2 MUTATED"   "PVRL2 MUTATED" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"PVRL2 WILD-TYPE" "PVRL2 WILD-TYPE" "PVRL2 WILD-TYPE" "PVRL2 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"PVRL2 WILD-TYPE" "PVRL2 WILD-TYPE" "PVRL2 WILD-TYPE" "PVRL2 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"PVRL2 WILD-TYPE" "PVRL2 WILD-TYPE" "PVRL2 WILD-TYPE" "PVRL2 WILD-TYPE" 
     TCGA-US-A77J 
"PVRL2 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"PVRL2 WILD-TYPE" "PVRL2 WILD-TYPE" "PVRL2 WILD-TYPE" "PVRL2 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"PVRL2 WILD-TYPE" "PVRL2 WILD-TYPE" "PVRL2 WILD-TYPE" "PVRL2 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
  "PVRL2 MUTATED" "PVRL2 WILD-TYPE" "PVRL2 WILD-TYPE" "PVRL2 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"PVRL2 WILD-TYPE" "PVRL2 WILD-TYPE" "PVRL2 WILD-TYPE" "PVRL2 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"PVRL2 WILD-TYPE" "PVRL2 WILD-TYPE" "PVRL2 WILD-TYPE" "PVRL2 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
  "PVRL2 MUTATED"   "PVRL2 MUTATED"   "PVRL2 MUTATED" "PVRL2 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"PVRL2 WILD-TYPE" "PVRL2 WILD-TYPE" "PVRL2 WILD-TYPE"   "PVRL2 MUTATED" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"PVRL2 WILD-TYPE" "PVRL2 WILD-TYPE" "PVRL2 WILD-TYPE" "PVRL2 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"PVRL2 WILD-TYPE" "PVRL2 WILD-TYPE" "PVRL2 WILD-TYPE" "PVRL2 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"PVRL2 WILD-TYPE" "PVRL2 WILD-TYPE" "PVRL2 WILD-TYPE" "PVRL2 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"PVRL2 WILD-TYPE" "PVRL2 WILD-TYPE" "PVRL2 WILD-TYPE"   "PVRL2 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"PVRL2 WILD-TYPE" "PVRL2 WILD-TYPE" "PVRL2 WILD-TYPE" "PVRL2 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
  "PVRL2 MUTATED" "PVRL2 WILD-TYPE" "PVRL2 WILD-TYPE" "PVRL2 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"PVRL2 WILD-TYPE"   "PVRL2 MUTATED"   "PVRL2 MUTATED"   "PVRL2 MUTATED" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"PVRL2 WILD-TYPE" "PVRL2 WILD-TYPE" "PVRL2 WILD-TYPE" "PVRL2 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"PVRL2 WILD-TYPE" "PVRL2 WILD-TYPE" "PVRL2 WILD-TYPE" "PVRL2 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"PVRL2 WILD-TYPE" "PVRL2 WILD-TYPE" "PVRL2 WILD-TYPE" "PVRL2 WILD-TYPE" 
     TCGA-US-A77J 
"PVRL2 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"PVRL2 WILD-TYPE" "PVRL2 WILD-TYPE" "PVRL2 WILD-TYPE" "PVRL2 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"PVRL2 WILD-TYPE" "PVRL2 WILD-TYPE" "PVRL2 WILD-TYPE" "PVRL2 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
  "PVRL2 MUTATED" "PVRL2 WILD-TYPE" "PVRL2 WILD-TYPE" "PVRL2 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"PVRL2 WILD-TYPE" "PVRL2 WILD-TYPE" "PVRL2 WILD-TYPE" "PVRL2 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"PVRL2 WILD-TYPE" "PVRL2 WILD-TYPE" "PVRL2 WILD-TYPE" "PVRL2 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
  "PVRL2 MUTATED"   "PVRL2 MUTATED"   "PVRL2 MUTATED" "PVRL2 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"PVRL2 WILD-TYPE" "PVRL2 WILD-TYPE" "PVRL2 WILD-TYPE"   "PVRL2 MUTATED" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"PVRL2 WILD-TYPE" "PVRL2 WILD-TYPE" "PVRL2 WILD-TYPE" "PVRL2 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"PVRL2 WILD-TYPE" "PVRL2 WILD-TYPE" "PVRL2 WILD-TYPE" "PVRL2 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"PVRL2 WILD-TYPE" "PVRL2 WILD-TYPE" "PVRL2 WILD-TYPE" "PVRL2 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"PVRL2 WILD-TYPE" "PVRL2 WILD-TYPE" "PVRL2 WILD-TYPE"   "PVRL2 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"PVRL2 WILD-TYPE" "PVRL2 WILD-TYPE" "PVRL2 WILD-TYPE" "PVRL2 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
  "PVRL2 MUTATED" "PVRL2 WILD-TYPE" "PVRL2 WILD-TYPE" "PVRL2 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"PVRL2 WILD-TYPE"   "PVRL2 MUTATED"   "PVRL2 MUTATED"   "PVRL2 MUTATED" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"PVRL2 WILD-TYPE" "PVRL2 WILD-TYPE" "PVRL2 WILD-TYPE" "PVRL2 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"PVRL2 WILD-TYPE" "PVRL2 WILD-TYPE" "PVRL2 WILD-TYPE" "PVRL2 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"PVRL2 WILD-TYPE" "PVRL2 WILD-TYPE" "PVRL2 WILD-TYPE" "PVRL2 WILD-TYPE" 
     TCGA-US-A77J 
"PVRL2 WILD-TYPE" 
[1] "hr=" "2.1"
D107V2, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  PVRL2 MUTATED          0        0         2         7         1        0
  PVRL2 WILD-TYPE        1        4         9        44         1        3
D107V3, multiclass
                 vv
clus              T1+T2 T3+T4
  PVRL2 MUTATED       0    10
  PVRL2 WILD-TYPE     6    56
D107V4, multiclass
       clus
vv      PVRL2 MUTATED PVRL2 WILD-TYPE
  T1+T2             0               6
  T3+T4            10              56
D107V5, binary
                 cls
clus               0  1
  PVRL2 MUTATED    2  8
  PVRL2 WILD-TYPE 15 46
[1] "tbl2"
                 cls
clus              [,1] [,2]
  PVRL2 MUTATED      2    8
  PVRL2 WILD-TYPE   15   46
   clus
vv  PVRL2 MUTATED PVRL2 WILD-TYPE
  0             2              15
  1             8              46
                 vv
clus              M0 M1 MX
  PVRL2 MUTATED    7  0  3
  PVRL2 WILD-TYPE 32  3 27
D107V6, multiclass
    clus
vv   PVRL2 MUTATED PVRL2 WILD-TYPE
  M0             7              32
  M1             0               3
  MX             3              27
D107V7, binary
                 cls
clus               0  1
  PVRL2 MUTATED    7  3
  PVRL2 WILD-TYPE 29 33
[1] "tbl2"
                 cls
clus              [,1] [,2]
  PVRL2 MUTATED      7    3
  PVRL2 WILD-TYPE   29   33
        clus
vv       PVRL2 MUTATED PVRL2 WILD-TYPE
  FEMALE             7              29
  MALE               3              33
                 vv
clus              PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  PVRL2 MUTATED                                    10
  PVRL2 WILD-TYPE                                  55
                 vv
clus              PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  PVRL2 MUTATED                                       0
  PVRL2 WILD-TYPE                                     4
                 vv
clus              PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  PVRL2 MUTATED                                                  0
  PVRL2 WILD-TYPE                                                2
D107V8, multiclass
                                                  clus
vv                                                 PVRL2 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                         10
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                        0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA             0
                                                  clus
vv                                                 PVRL2 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                           55
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                          4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA               2
D107V9, continuous
D107V10, continuous
                 vv
clus              R0 R1 RX
  PVRL2 MUTATED    6  3  0
  PVRL2 WILD-TYPE 36 21  2
D107V11, multiclass
    clus
vv   PVRL2 MUTATED PVRL2 WILD-TYPE
  R0             6              36
  R1             3              21
  RX             0               2
D107V12, continuous

Clustering(108) Variable = TNNI3K MUTATION ANALYSIS
D108V1, survival
                  sevent
clus2               0  1
  TNNI3K MUTATED    8  4
  TNNI3K WILD-TYPE 32 25
  TNNI3K MUTATED TNNI3K WILD-TYPE 
              12               57 
  TNNI3K MUTATED TNNI3K WILD-TYPE 
               4               25 
$`TNNI3K MUTATED`
TCGA-H6-A45N TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8315 
        7.66         0.66         0.13         0.62         0.79         0.92 
TCGA-HZ-8636 TCGA-HZ-A49G TCGA-IB-7645 TCGA-IB-7651 TCGA-IB-7893 TCGA-PZ-A5RE 
        0.16         0.76        49.38        19.82         3.85         8.12 

$`TNNI3K WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P5 TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR 
        0.13        11.93        12.66         2.47         0.03         5.46 
TCGA-FZ-5920 TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 TCGA-H8-A6C1 TCGA-HZ-7289 
        2.01        36.20        20.81        12.89        13.02         7.89 
TCGA-HZ-7918 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8003 
        0.92         0.26        12.13        11.87         0.26         0.69 
TCGA-HZ-8005 TCGA-HZ-8317 TCGA-HZ-8638 TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK 
        3.95         0.53         2.99         0.95         6.38         1.51 
TCGA-IB-7644 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7652 TCGA-IB-7885 
       11.41         4.77        21.90        15.35        15.65        27.98 
TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 
        4.04         3.62        43.79        15.81        19.66        16.04 
TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ 
       15.98         0.56        17.16        10.82         9.86         7.20 
TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W TCGA-Q3-A5QY 
       15.12         0.26         1.35         4.18         3.62        13.68 
TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
       16.80        14.14        18.67 

  TNNI3K MUTATED TNNI3K WILD-TYPE 
            0.13             0.03 
  TNNI3K MUTATED TNNI3K WILD-TYPE 
           49.38            43.79 
  TNNI3K MUTATED TNNI3K WILD-TYPE 
           0.855            9.860 
[1] "0.1 - 49.4 (0.9)" "0.0 - 43.8 (9.9)"
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
"TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
"TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
  "TNNI3K MUTATED" "TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
  "TNNI3K MUTATED"   "TNNI3K MUTATED" "TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE"   "TNNI3K MUTATED"   "TNNI3K MUTATED" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
"TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE"   "TNNI3K MUTATED" "TNNI3K WILD-TYPE" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
  "TNNI3K MUTATED" "TNNI3K WILD-TYPE"   "TNNI3K MUTATED" "TNNI3K WILD-TYPE" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
"TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE"   "TNNI3K MUTATED" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
"TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE"   "TNNI3K MUTATED" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
"TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
"TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
  "TNNI3K MUTATED" "TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
  "TNNI3K MUTATED" "TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" 
      TCGA-US-A77J 
"TNNI3K WILD-TYPE" 
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
"TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
"TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
  "TNNI3K MUTATED" "TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
  "TNNI3K MUTATED"   "TNNI3K MUTATED" "TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE"   "TNNI3K MUTATED"   "TNNI3K MUTATED" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
"TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE"   "TNNI3K MUTATED" "TNNI3K WILD-TYPE" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
  "TNNI3K MUTATED" "TNNI3K WILD-TYPE"   "TNNI3K MUTATED" "TNNI3K WILD-TYPE" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
"TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE"   "TNNI3K MUTATED" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
"TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE"   "TNNI3K MUTATED" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
"TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
"TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
  "TNNI3K MUTATED" "TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
  "TNNI3K MUTATED" "TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" 
      TCGA-US-A77J 
"TNNI3K WILD-TYPE" 
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
"TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
"TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
  "TNNI3K MUTATED" "TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
  "TNNI3K MUTATED"   "TNNI3K MUTATED" "TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE"   "TNNI3K MUTATED"   "TNNI3K MUTATED" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
"TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE"   "TNNI3K MUTATED" "TNNI3K WILD-TYPE" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
  "TNNI3K MUTATED" "TNNI3K WILD-TYPE"   "TNNI3K MUTATED" "TNNI3K WILD-TYPE" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
"TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE"   "TNNI3K MUTATED" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
"TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE"   "TNNI3K MUTATED" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
"TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
"TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
  "TNNI3K MUTATED" "TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
  "TNNI3K MUTATED" "TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" 
      TCGA-US-A77J 
"TNNI3K WILD-TYPE" 
[1] "hr=" "1.5"
D108V2, continuous
                  vv
clus               STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  TNNI3K MUTATED          0        0         2         8         1        1
  TNNI3K WILD-TYPE        1        4         9        43         1        2
D108V3, multiclass
                  vv
clus               T1+T2 T3+T4
  TNNI3K MUTATED       1    11
  TNNI3K WILD-TYPE     5    55
D108V4, multiclass
       clus
vv      TNNI3K MUTATED TNNI3K WILD-TYPE
  T1+T2              1                5
  T3+T4             11               55
D108V5, binary
                  cls
clus                0  1
  TNNI3K MUTATED    4  8
  TNNI3K WILD-TYPE 13 46
[1] "tbl2"
                  cls
clus               [,1] [,2]
  TNNI3K MUTATED      4    8
  TNNI3K WILD-TYPE   13   46
   clus
vv  TNNI3K MUTATED TNNI3K WILD-TYPE
  0              4               13
  1              8               46
                  vv
clus               M0 M1 MX
  TNNI3K MUTATED    4  1  7
  TNNI3K WILD-TYPE 35  2 23
D108V6, multiclass
    clus
vv   TNNI3K MUTATED TNNI3K WILD-TYPE
  M0              4               35
  M1              1                2
  MX              7               23
D108V7, binary
                  cls
clus                0  1
  TNNI3K MUTATED    9  3
  TNNI3K WILD-TYPE 27 33
[1] "tbl2"
                  cls
clus               [,1] [,2]
  TNNI3K MUTATED      9    3
  TNNI3K WILD-TYPE   27   33
        clus
vv       TNNI3K MUTATED TNNI3K WILD-TYPE
  FEMALE              9               27
  MALE                3               33
                  vv
clus               PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  TNNI3K MUTATED                                    11
  TNNI3K WILD-TYPE                                  54
                  vv
clus               PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  TNNI3K MUTATED                                       1
  TNNI3K WILD-TYPE                                     3
                  vv
clus               PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  TNNI3K MUTATED                                                  0
  TNNI3K WILD-TYPE                                                2
D108V8, multiclass
                                                  clus
vv                                                 TNNI3K MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                          11
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                         1
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA              0
                                                  clus
vv                                                 TNNI3K WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                            54
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                           3
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                2
D108V9, continuous
[1] "Remove cluster labels:" "TNNI3K MUTATED"        
clus
  TNNI3K MUTATED TNNI3K WILD-TYPE 
               2               20 
      TCGA-F2-6880       TCGA-FB-A4P5       TCGA-FB-A4P6       TCGA-FB-A5VM 
"TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" 
      TCGA-FB-A78T       TCGA-FB-A7DR       TCGA-H6-8124       TCGA-H8-A6C1 
"TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" 
      TCGA-IB-7644       TCGA-IB-7649       TCGA-IB-7885       TCGA-IB-7886 
"TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" 
      TCGA-IB-7887       TCGA-IB-7891       TCGA-IB-8126       TCGA-IB-8127 
"TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" 
      TCGA-IB-A5SS       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" 
D108V10, continuous
[1] "Remove cluster labels:" "TNNI3K MUTATED"        
clus
  TNNI3K MUTATED TNNI3K WILD-TYPE 
               1               18 
      TCGA-FB-A4P5       TCGA-FB-A4P6       TCGA-FB-A5VM       TCGA-FB-A78T 
"TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" 
      TCGA-FB-A7DR       TCGA-H6-8124       TCGA-H8-A6C1       TCGA-IB-7644 
"TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" 
      TCGA-IB-7649       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7891 
"TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" 
      TCGA-IB-8126       TCGA-IB-8127       TCGA-IB-A5SS       TCGA-IB-A6UG 
"TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" 
      TCGA-LB-A7SX       TCGA-OE-A75W 
"TNNI3K WILD-TYPE" "TNNI3K WILD-TYPE" 
                  vv
clus               R0 R1 RX
  TNNI3K MUTATED    6  4  0
  TNNI3K WILD-TYPE 36 20  2
D108V11, multiclass
    clus
vv   TNNI3K MUTATED TNNI3K WILD-TYPE
  R0              6               36
  R1              4               20
  RX              0                2
D108V12, continuous

Clustering(109) Variable = NEDD4L MUTATION ANALYSIS
D109V1, survival
                  sevent
clus2               0  1
  NEDD4L MUTATED    3  7
  NEDD4L WILD-TYPE 37 22
  NEDD4L MUTATED NEDD4L WILD-TYPE 
              10               59 
  NEDD4L MUTATED NEDD4L WILD-TYPE 
               7               22 
$`NEDD4L MUTATED`
TCGA-F2-6879 TCGA-F2-7276 TCGA-F2-A44H TCGA-HZ-A49G TCGA-HZ-A49H TCGA-IB-7646 
       10.98         7.10        19.27         0.76         0.95         4.77 
TCGA-IB-7649 TCGA-IB-7651 TCGA-IB-7889 TCGA-IB-7890 
       15.35        19.82        15.81        19.66 

$`NEDD4L WILD-TYPE`
TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-A44G TCGA-FB-A4P5 TCGA-FB-A4P6 TCGA-FB-A545 
        9.70        11.84         5.03         0.13        11.93        12.66 
TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR TCGA-FZ-5920 TCGA-FZ-5922 TCGA-FZ-5923 
        2.47         0.03         5.46         2.01        36.20        20.81 
TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-7919 
       12.89         7.66        13.02         7.89         0.92         0.66 
TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8001 
        0.13         0.26        12.13        11.87         0.26         0.62 
TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8636 
        0.79         0.69         3.95         0.92         0.53         0.16 
TCGA-HZ-8638 TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7647 
        2.99         6.38         1.51        11.41        49.38        21.90 
TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7891 
       15.65        27.98         4.04         3.62        43.79        16.04 
TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP 
        3.85        15.98         0.56        17.16        10.82         9.86 
TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W 
        7.20        15.12         0.26         1.35         4.18         3.62 
TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
        8.12        13.68        16.80        14.14        18.67 

  NEDD4L MUTATED NEDD4L WILD-TYPE 
            0.76             0.03 
  NEDD4L MUTATED NEDD4L WILD-TYPE 
           19.82            49.38 
  NEDD4L MUTATED NEDD4L WILD-TYPE 
          13.165            7.200 
[1] "0.8 - 19.8 (13.2)" "0.0 - 49.4 (7.2)" 
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
  "NEDD4L MUTATED" "NEDD4L WILD-TYPE" "NEDD4L WILD-TYPE"   "NEDD4L MUTATED" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"NEDD4L WILD-TYPE"   "NEDD4L MUTATED" "NEDD4L WILD-TYPE" "NEDD4L WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
"NEDD4L WILD-TYPE" "NEDD4L WILD-TYPE" "NEDD4L WILD-TYPE" "NEDD4L WILD-TYPE" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"NEDD4L WILD-TYPE" "NEDD4L WILD-TYPE" "NEDD4L WILD-TYPE" "NEDD4L WILD-TYPE" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
"NEDD4L WILD-TYPE" "NEDD4L WILD-TYPE" "NEDD4L WILD-TYPE" "NEDD4L WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
"NEDD4L WILD-TYPE" "NEDD4L WILD-TYPE" "NEDD4L WILD-TYPE" "NEDD4L WILD-TYPE" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"NEDD4L WILD-TYPE" "NEDD4L WILD-TYPE" "NEDD4L WILD-TYPE" "NEDD4L WILD-TYPE" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
"NEDD4L WILD-TYPE" "NEDD4L WILD-TYPE" "NEDD4L WILD-TYPE" "NEDD4L WILD-TYPE" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
"NEDD4L WILD-TYPE" "NEDD4L WILD-TYPE"   "NEDD4L MUTATED"   "NEDD4L MUTATED" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
"NEDD4L WILD-TYPE" "NEDD4L WILD-TYPE" "NEDD4L WILD-TYPE" "NEDD4L WILD-TYPE" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
  "NEDD4L MUTATED" "NEDD4L WILD-TYPE"   "NEDD4L MUTATED"   "NEDD4L MUTATED" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
"NEDD4L WILD-TYPE" "NEDD4L WILD-TYPE" "NEDD4L WILD-TYPE" "NEDD4L WILD-TYPE" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
"NEDD4L WILD-TYPE"   "NEDD4L MUTATED"   "NEDD4L MUTATED" "NEDD4L WILD-TYPE" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
"NEDD4L WILD-TYPE" "NEDD4L WILD-TYPE" "NEDD4L WILD-TYPE" "NEDD4L WILD-TYPE" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"NEDD4L WILD-TYPE" "NEDD4L WILD-TYPE" "NEDD4L WILD-TYPE" "NEDD4L WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"NEDD4L WILD-TYPE" "NEDD4L WILD-TYPE" "NEDD4L WILD-TYPE" "NEDD4L WILD-TYPE" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
"NEDD4L WILD-TYPE" "NEDD4L WILD-TYPE" "NEDD4L WILD-TYPE" "NEDD4L WILD-TYPE" 
      TCGA-US-A77J 
"NEDD4L WILD-TYPE" 
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
  "NEDD4L MUTATED" "NEDD4L WILD-TYPE" "NEDD4L WILD-TYPE"   "NEDD4L MUTATED" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"NEDD4L WILD-TYPE"   "NEDD4L MUTATED" "NEDD4L WILD-TYPE" "NEDD4L WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
"NEDD4L WILD-TYPE" "NEDD4L WILD-TYPE" "NEDD4L WILD-TYPE" "NEDD4L WILD-TYPE" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"NEDD4L WILD-TYPE" "NEDD4L WILD-TYPE" "NEDD4L WILD-TYPE" "NEDD4L WILD-TYPE" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
"NEDD4L WILD-TYPE" "NEDD4L WILD-TYPE" "NEDD4L WILD-TYPE" "NEDD4L WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
"NEDD4L WILD-TYPE" "NEDD4L WILD-TYPE" "NEDD4L WILD-TYPE" "NEDD4L WILD-TYPE" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"NEDD4L WILD-TYPE" "NEDD4L WILD-TYPE" "NEDD4L WILD-TYPE" "NEDD4L WILD-TYPE" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
"NEDD4L WILD-TYPE" "NEDD4L WILD-TYPE" "NEDD4L WILD-TYPE" "NEDD4L WILD-TYPE" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
"NEDD4L WILD-TYPE" "NEDD4L WILD-TYPE"   "NEDD4L MUTATED"   "NEDD4L MUTATED" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
"NEDD4L WILD-TYPE" "NEDD4L WILD-TYPE" "NEDD4L WILD-TYPE" "NEDD4L WILD-TYPE" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
  "NEDD4L MUTATED" "NEDD4L WILD-TYPE"   "NEDD4L MUTATED"   "NEDD4L MUTATED" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
"NEDD4L WILD-TYPE" "NEDD4L WILD-TYPE" "NEDD4L WILD-TYPE" "NEDD4L WILD-TYPE" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
"NEDD4L WILD-TYPE"   "NEDD4L MUTATED"   "NEDD4L MUTATED" "NEDD4L WILD-TYPE" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
"NEDD4L WILD-TYPE" "NEDD4L WILD-TYPE" "NEDD4L WILD-TYPE" "NEDD4L WILD-TYPE" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"NEDD4L WILD-TYPE" "NEDD4L WILD-TYPE" "NEDD4L WILD-TYPE" "NEDD4L WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"NEDD4L WILD-TYPE" "NEDD4L WILD-TYPE" "NEDD4L WILD-TYPE" "NEDD4L WILD-TYPE" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
"NEDD4L WILD-TYPE" "NEDD4L WILD-TYPE" "NEDD4L WILD-TYPE" "NEDD4L WILD-TYPE" 
      TCGA-US-A77J 
"NEDD4L WILD-TYPE" 
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
  "NEDD4L MUTATED" "NEDD4L WILD-TYPE" "NEDD4L WILD-TYPE"   "NEDD4L MUTATED" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"NEDD4L WILD-TYPE"   "NEDD4L MUTATED" "NEDD4L WILD-TYPE" "NEDD4L WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
"NEDD4L WILD-TYPE" "NEDD4L WILD-TYPE" "NEDD4L WILD-TYPE" "NEDD4L WILD-TYPE" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"NEDD4L WILD-TYPE" "NEDD4L WILD-TYPE" "NEDD4L WILD-TYPE" "NEDD4L WILD-TYPE" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
"NEDD4L WILD-TYPE" "NEDD4L WILD-TYPE" "NEDD4L WILD-TYPE" "NEDD4L WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
"NEDD4L WILD-TYPE" "NEDD4L WILD-TYPE" "NEDD4L WILD-TYPE" "NEDD4L WILD-TYPE" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"NEDD4L WILD-TYPE" "NEDD4L WILD-TYPE" "NEDD4L WILD-TYPE" "NEDD4L WILD-TYPE" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
"NEDD4L WILD-TYPE" "NEDD4L WILD-TYPE" "NEDD4L WILD-TYPE" "NEDD4L WILD-TYPE" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
"NEDD4L WILD-TYPE" "NEDD4L WILD-TYPE"   "NEDD4L MUTATED"   "NEDD4L MUTATED" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
"NEDD4L WILD-TYPE" "NEDD4L WILD-TYPE" "NEDD4L WILD-TYPE" "NEDD4L WILD-TYPE" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
  "NEDD4L MUTATED" "NEDD4L WILD-TYPE"   "NEDD4L MUTATED"   "NEDD4L MUTATED" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
"NEDD4L WILD-TYPE" "NEDD4L WILD-TYPE" "NEDD4L WILD-TYPE" "NEDD4L WILD-TYPE" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
"NEDD4L WILD-TYPE"   "NEDD4L MUTATED"   "NEDD4L MUTATED" "NEDD4L WILD-TYPE" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
"NEDD4L WILD-TYPE" "NEDD4L WILD-TYPE" "NEDD4L WILD-TYPE" "NEDD4L WILD-TYPE" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"NEDD4L WILD-TYPE" "NEDD4L WILD-TYPE" "NEDD4L WILD-TYPE" "NEDD4L WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"NEDD4L WILD-TYPE" "NEDD4L WILD-TYPE" "NEDD4L WILD-TYPE" "NEDD4L WILD-TYPE" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
"NEDD4L WILD-TYPE" "NEDD4L WILD-TYPE" "NEDD4L WILD-TYPE" "NEDD4L WILD-TYPE" 
      TCGA-US-A77J 
"NEDD4L WILD-TYPE" 
[1] "hr=" "1.6"
D109V2, continuous
                  vv
clus               STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  NEDD4L MUTATED          0        1         1         8         0        0
  NEDD4L WILD-TYPE        1        3        10        43         2        3
D109V3, multiclass
                  vv
clus               T1+T2 T3+T4
  NEDD4L MUTATED       2     8
  NEDD4L WILD-TYPE     4    58
D109V4, multiclass
       clus
vv      NEDD4L MUTATED NEDD4L WILD-TYPE
  T1+T2              2                4
  T3+T4              8               58
D109V5, binary
                  cls
clus                0  1
  NEDD4L MUTATED    2  8
  NEDD4L WILD-TYPE 15 46
[1] "tbl2"
                  cls
clus               [,1] [,2]
  NEDD4L MUTATED      2    8
  NEDD4L WILD-TYPE   15   46
   clus
vv  NEDD4L MUTATED NEDD4L WILD-TYPE
  0              2               15
  1              8               46
                  vv
clus               M0 M1 MX
  NEDD4L MUTATED    8  0  2
  NEDD4L WILD-TYPE 31  3 28
D109V6, multiclass
    clus
vv   NEDD4L MUTATED NEDD4L WILD-TYPE
  M0              8               31
  M1              0                3
  MX              2               28
D109V7, binary
                  cls
clus                0  1
  NEDD4L MUTATED    5  5
  NEDD4L WILD-TYPE 31 31
[1] "tbl2"
                  cls
clus               [,1] [,2]
  NEDD4L MUTATED      5    5
  NEDD4L WILD-TYPE   31   31
        clus
vv       NEDD4L MUTATED NEDD4L WILD-TYPE
  FEMALE              5               31
  MALE                5               31
                  vv
clus               PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  NEDD4L MUTATED                                     9
  NEDD4L WILD-TYPE                                  56
                  vv
clus               PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  NEDD4L MUTATED                                       0
  NEDD4L WILD-TYPE                                     4
                  vv
clus               PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  NEDD4L MUTATED                                                  0
  NEDD4L WILD-TYPE                                                2
D109V8, multiclass
                                                  clus
vv                                                 NEDD4L MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                           9
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                         0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA              0
                                                  clus
vv                                                 NEDD4L WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                            56
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                           4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                2
D109V9, continuous
[1] "Remove cluster labels:" "NEDD4L MUTATED"        
clus
  NEDD4L MUTATED NEDD4L WILD-TYPE 
               2               20 
      TCGA-F2-6880       TCGA-FB-A4P5       TCGA-FB-A4P6       TCGA-FB-A5VM 
"NEDD4L WILD-TYPE" "NEDD4L WILD-TYPE" "NEDD4L WILD-TYPE" "NEDD4L WILD-TYPE" 
      TCGA-FB-A78T       TCGA-FB-A7DR       TCGA-H6-8124       TCGA-H6-A45N 
"NEDD4L WILD-TYPE" "NEDD4L WILD-TYPE" "NEDD4L WILD-TYPE" "NEDD4L WILD-TYPE" 
      TCGA-H8-A6C1       TCGA-IB-7644       TCGA-IB-7885       TCGA-IB-7886 
"NEDD4L WILD-TYPE" "NEDD4L WILD-TYPE" "NEDD4L WILD-TYPE" "NEDD4L WILD-TYPE" 
      TCGA-IB-7887       TCGA-IB-7891       TCGA-IB-8126       TCGA-IB-8127 
"NEDD4L WILD-TYPE" "NEDD4L WILD-TYPE" "NEDD4L WILD-TYPE" "NEDD4L WILD-TYPE" 
      TCGA-IB-A5SS       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"NEDD4L WILD-TYPE" "NEDD4L WILD-TYPE" "NEDD4L WILD-TYPE" "NEDD4L WILD-TYPE" 
D109V10, continuous
[1] "Remove cluster labels:" "NEDD4L MUTATED"        
clus
  NEDD4L MUTATED NEDD4L WILD-TYPE 
               2               17 
      TCGA-FB-A4P5       TCGA-FB-A4P6       TCGA-FB-A5VM       TCGA-FB-A78T 
"NEDD4L WILD-TYPE" "NEDD4L WILD-TYPE" "NEDD4L WILD-TYPE" "NEDD4L WILD-TYPE" 
      TCGA-FB-A7DR       TCGA-H6-8124       TCGA-H8-A6C1       TCGA-IB-7644 
"NEDD4L WILD-TYPE" "NEDD4L WILD-TYPE" "NEDD4L WILD-TYPE" "NEDD4L WILD-TYPE" 
      TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7891       TCGA-IB-8126 
"NEDD4L WILD-TYPE" "NEDD4L WILD-TYPE" "NEDD4L WILD-TYPE" "NEDD4L WILD-TYPE" 
      TCGA-IB-8127       TCGA-IB-A5SS       TCGA-IB-A6UG       TCGA-LB-A7SX 
"NEDD4L WILD-TYPE" "NEDD4L WILD-TYPE" "NEDD4L WILD-TYPE" "NEDD4L WILD-TYPE" 
      TCGA-OE-A75W 
"NEDD4L WILD-TYPE" 
                  vv
clus               R0 R1 RX
  NEDD4L MUTATED    7  3  0
  NEDD4L WILD-TYPE 35 21  2
D109V11, multiclass
    clus
vv   NEDD4L MUTATED NEDD4L WILD-TYPE
  R0              7               35
  R1              3               21
  RX              0                2
D109V12, continuous

Clustering(110) Variable = IRX4 MUTATION ANALYSIS
D110V1, survival
                sevent
clus2             0  1
  IRX4 MUTATED    5  4
  IRX4 WILD-TYPE 35 25
  IRX4 MUTATED IRX4 WILD-TYPE 
             9             60 
  IRX4 MUTATED IRX4 WILD-TYPE 
             4             25 
$`IRX4 MUTATED`
TCGA-F2-A44G TCGA-F2-A44H TCGA-HZ-7919 TCGA-HZ-8003 TCGA-HZ-8636 TCGA-HZ-A49H 
        5.03        19.27         0.66         0.69         0.16         0.95 
TCGA-IB-7887 TCGA-IB-7897 TCGA-US-A77J 
        3.62        15.98        18.67 

$`IRX4 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-FB-A4P5 TCGA-FB-A4P6 
       10.98         9.70        11.84         7.10         0.13        11.93 
TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR TCGA-FZ-5920 TCGA-FZ-5922 
       12.66         2.47         0.03         5.46         2.01        36.20 
TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7289 TCGA-HZ-7918 
       20.81        12.89         7.66        13.02         7.89         0.92 
TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8001 
        0.13         0.26        12.13        11.87         0.26         0.62 
TCGA-HZ-8002 TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8638 TCGA-HZ-A49G 
        0.79         3.95         0.92         0.53         2.99         0.76 
TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 
        6.38         1.51        11.41        49.38         4.77        21.90 
TCGA-IB-7649 TCGA-IB-7651 TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7888 
       15.35        19.82        15.65        27.98         4.04        43.79 
TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-8126 TCGA-IB-8127 
       15.81        19.66        16.04         3.85         0.56        17.16 
TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG 
       10.82         9.86         7.20        15.12         0.26         1.35 
TCGA-LB-A7SX TCGA-OE-A75W TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E 
        4.18         3.62         8.12        13.68        16.80        14.14 

  IRX4 MUTATED IRX4 WILD-TYPE 
          0.16           0.03 
  IRX4 MUTATED IRX4 WILD-TYPE 
         19.27          49.38 
  IRX4 MUTATED IRX4 WILD-TYPE 
         3.620          8.005 
[1] "0.2 - 19.3 (3.6)" "0.0 - 49.4 (8.0)"
    TCGA-F2-6879     TCGA-F2-6880     TCGA-F2-7273     TCGA-F2-7276 
"IRX4 WILD-TYPE" "IRX4 WILD-TYPE" "IRX4 WILD-TYPE" "IRX4 WILD-TYPE" 
    TCGA-F2-A44G     TCGA-F2-A44H     TCGA-FB-A4P5     TCGA-FB-A4P6 
  "IRX4 MUTATED"   "IRX4 MUTATED" "IRX4 WILD-TYPE" "IRX4 WILD-TYPE" 
    TCGA-FB-A545     TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-FB-A7DR 
"IRX4 WILD-TYPE" "IRX4 WILD-TYPE" "IRX4 WILD-TYPE" "IRX4 WILD-TYPE" 
    TCGA-FZ-5920     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-H6-8124 
"IRX4 WILD-TYPE" "IRX4 WILD-TYPE" "IRX4 WILD-TYPE" "IRX4 WILD-TYPE" 
    TCGA-H6-A45N     TCGA-H8-A6C1     TCGA-HZ-7289     TCGA-HZ-7918 
"IRX4 WILD-TYPE" "IRX4 WILD-TYPE" "IRX4 WILD-TYPE" "IRX4 WILD-TYPE" 
    TCGA-HZ-7919     TCGA-HZ-7922     TCGA-HZ-7923     TCGA-HZ-7924 
  "IRX4 MUTATED" "IRX4 WILD-TYPE" "IRX4 WILD-TYPE" "IRX4 WILD-TYPE" 
    TCGA-HZ-7925     TCGA-HZ-7926     TCGA-HZ-8001     TCGA-HZ-8002 
"IRX4 WILD-TYPE" "IRX4 WILD-TYPE" "IRX4 WILD-TYPE" "IRX4 WILD-TYPE" 
    TCGA-HZ-8003     TCGA-HZ-8005     TCGA-HZ-8315     TCGA-HZ-8317 
  "IRX4 MUTATED" "IRX4 WILD-TYPE" "IRX4 WILD-TYPE" "IRX4 WILD-TYPE" 
    TCGA-HZ-8636     TCGA-HZ-8638     TCGA-HZ-A49G     TCGA-HZ-A49H 
  "IRX4 MUTATED" "IRX4 WILD-TYPE" "IRX4 WILD-TYPE"   "IRX4 MUTATED" 
    TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-IB-7644     TCGA-IB-7645 
"IRX4 WILD-TYPE" "IRX4 WILD-TYPE" "IRX4 WILD-TYPE" "IRX4 WILD-TYPE" 
    TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7651 
"IRX4 WILD-TYPE" "IRX4 WILD-TYPE" "IRX4 WILD-TYPE" "IRX4 WILD-TYPE" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887 
"IRX4 WILD-TYPE" "IRX4 WILD-TYPE" "IRX4 WILD-TYPE"   "IRX4 MUTATED" 
    TCGA-IB-7888     TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891 
"IRX4 WILD-TYPE" "IRX4 WILD-TYPE" "IRX4 WILD-TYPE" "IRX4 WILD-TYPE" 
    TCGA-IB-7893     TCGA-IB-7897     TCGA-IB-8126     TCGA-IB-8127 
"IRX4 WILD-TYPE"   "IRX4 MUTATED" "IRX4 WILD-TYPE" "IRX4 WILD-TYPE" 
    TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS 
"IRX4 WILD-TYPE" "IRX4 WILD-TYPE" "IRX4 WILD-TYPE" "IRX4 WILD-TYPE" 
    TCGA-IB-A5ST     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
"IRX4 WILD-TYPE" "IRX4 WILD-TYPE" "IRX4 WILD-TYPE" "IRX4 WILD-TYPE" 
    TCGA-PZ-A5RE     TCGA-Q3-A5QY     TCGA-US-A779     TCGA-US-A77E 
"IRX4 WILD-TYPE" "IRX4 WILD-TYPE" "IRX4 WILD-TYPE" "IRX4 WILD-TYPE" 
    TCGA-US-A77J 
  "IRX4 MUTATED" 
    TCGA-F2-6879     TCGA-F2-6880     TCGA-F2-7273     TCGA-F2-7276 
"IRX4 WILD-TYPE" "IRX4 WILD-TYPE" "IRX4 WILD-TYPE" "IRX4 WILD-TYPE" 
    TCGA-F2-A44G     TCGA-F2-A44H     TCGA-FB-A4P5     TCGA-FB-A4P6 
  "IRX4 MUTATED"   "IRX4 MUTATED" "IRX4 WILD-TYPE" "IRX4 WILD-TYPE" 
    TCGA-FB-A545     TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-FB-A7DR 
"IRX4 WILD-TYPE" "IRX4 WILD-TYPE" "IRX4 WILD-TYPE" "IRX4 WILD-TYPE" 
    TCGA-FZ-5920     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-H6-8124 
"IRX4 WILD-TYPE" "IRX4 WILD-TYPE" "IRX4 WILD-TYPE" "IRX4 WILD-TYPE" 
    TCGA-H6-A45N     TCGA-H8-A6C1     TCGA-HZ-7289     TCGA-HZ-7918 
"IRX4 WILD-TYPE" "IRX4 WILD-TYPE" "IRX4 WILD-TYPE" "IRX4 WILD-TYPE" 
    TCGA-HZ-7919     TCGA-HZ-7922     TCGA-HZ-7923     TCGA-HZ-7924 
  "IRX4 MUTATED" "IRX4 WILD-TYPE" "IRX4 WILD-TYPE" "IRX4 WILD-TYPE" 
    TCGA-HZ-7925     TCGA-HZ-7926     TCGA-HZ-8001     TCGA-HZ-8002 
"IRX4 WILD-TYPE" "IRX4 WILD-TYPE" "IRX4 WILD-TYPE" "IRX4 WILD-TYPE" 
    TCGA-HZ-8003     TCGA-HZ-8005     TCGA-HZ-8315     TCGA-HZ-8317 
  "IRX4 MUTATED" "IRX4 WILD-TYPE" "IRX4 WILD-TYPE" "IRX4 WILD-TYPE" 
    TCGA-HZ-8636     TCGA-HZ-8638     TCGA-HZ-A49G     TCGA-HZ-A49H 
  "IRX4 MUTATED" "IRX4 WILD-TYPE" "IRX4 WILD-TYPE"   "IRX4 MUTATED" 
    TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-IB-7644     TCGA-IB-7645 
"IRX4 WILD-TYPE" "IRX4 WILD-TYPE" "IRX4 WILD-TYPE" "IRX4 WILD-TYPE" 
    TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7651 
"IRX4 WILD-TYPE" "IRX4 WILD-TYPE" "IRX4 WILD-TYPE" "IRX4 WILD-TYPE" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887 
"IRX4 WILD-TYPE" "IRX4 WILD-TYPE" "IRX4 WILD-TYPE"   "IRX4 MUTATED" 
    TCGA-IB-7888     TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891 
"IRX4 WILD-TYPE" "IRX4 WILD-TYPE" "IRX4 WILD-TYPE" "IRX4 WILD-TYPE" 
    TCGA-IB-7893     TCGA-IB-7897     TCGA-IB-8126     TCGA-IB-8127 
"IRX4 WILD-TYPE"   "IRX4 MUTATED" "IRX4 WILD-TYPE" "IRX4 WILD-TYPE" 
    TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS 
"IRX4 WILD-TYPE" "IRX4 WILD-TYPE" "IRX4 WILD-TYPE" "IRX4 WILD-TYPE" 
    TCGA-IB-A5ST     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
"IRX4 WILD-TYPE" "IRX4 WILD-TYPE" "IRX4 WILD-TYPE" "IRX4 WILD-TYPE" 
    TCGA-PZ-A5RE     TCGA-Q3-A5QY     TCGA-US-A779     TCGA-US-A77E 
"IRX4 WILD-TYPE" "IRX4 WILD-TYPE" "IRX4 WILD-TYPE" "IRX4 WILD-TYPE" 
    TCGA-US-A77J 
  "IRX4 MUTATED" 
    TCGA-F2-6879     TCGA-F2-6880     TCGA-F2-7273     TCGA-F2-7276 
"IRX4 WILD-TYPE" "IRX4 WILD-TYPE" "IRX4 WILD-TYPE" "IRX4 WILD-TYPE" 
    TCGA-F2-A44G     TCGA-F2-A44H     TCGA-FB-A4P5     TCGA-FB-A4P6 
  "IRX4 MUTATED"   "IRX4 MUTATED" "IRX4 WILD-TYPE" "IRX4 WILD-TYPE" 
    TCGA-FB-A545     TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-FB-A7DR 
"IRX4 WILD-TYPE" "IRX4 WILD-TYPE" "IRX4 WILD-TYPE" "IRX4 WILD-TYPE" 
    TCGA-FZ-5920     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-H6-8124 
"IRX4 WILD-TYPE" "IRX4 WILD-TYPE" "IRX4 WILD-TYPE" "IRX4 WILD-TYPE" 
    TCGA-H6-A45N     TCGA-H8-A6C1     TCGA-HZ-7289     TCGA-HZ-7918 
"IRX4 WILD-TYPE" "IRX4 WILD-TYPE" "IRX4 WILD-TYPE" "IRX4 WILD-TYPE" 
    TCGA-HZ-7919     TCGA-HZ-7922     TCGA-HZ-7923     TCGA-HZ-7924 
  "IRX4 MUTATED" "IRX4 WILD-TYPE" "IRX4 WILD-TYPE" "IRX4 WILD-TYPE" 
    TCGA-HZ-7925     TCGA-HZ-7926     TCGA-HZ-8001     TCGA-HZ-8002 
"IRX4 WILD-TYPE" "IRX4 WILD-TYPE" "IRX4 WILD-TYPE" "IRX4 WILD-TYPE" 
    TCGA-HZ-8003     TCGA-HZ-8005     TCGA-HZ-8315     TCGA-HZ-8317 
  "IRX4 MUTATED" "IRX4 WILD-TYPE" "IRX4 WILD-TYPE" "IRX4 WILD-TYPE" 
    TCGA-HZ-8636     TCGA-HZ-8638     TCGA-HZ-A49G     TCGA-HZ-A49H 
  "IRX4 MUTATED" "IRX4 WILD-TYPE" "IRX4 WILD-TYPE"   "IRX4 MUTATED" 
    TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-IB-7644     TCGA-IB-7645 
"IRX4 WILD-TYPE" "IRX4 WILD-TYPE" "IRX4 WILD-TYPE" "IRX4 WILD-TYPE" 
    TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7651 
"IRX4 WILD-TYPE" "IRX4 WILD-TYPE" "IRX4 WILD-TYPE" "IRX4 WILD-TYPE" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887 
"IRX4 WILD-TYPE" "IRX4 WILD-TYPE" "IRX4 WILD-TYPE"   "IRX4 MUTATED" 
    TCGA-IB-7888     TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891 
"IRX4 WILD-TYPE" "IRX4 WILD-TYPE" "IRX4 WILD-TYPE" "IRX4 WILD-TYPE" 
    TCGA-IB-7893     TCGA-IB-7897     TCGA-IB-8126     TCGA-IB-8127 
"IRX4 WILD-TYPE"   "IRX4 MUTATED" "IRX4 WILD-TYPE" "IRX4 WILD-TYPE" 
    TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS 
"IRX4 WILD-TYPE" "IRX4 WILD-TYPE" "IRX4 WILD-TYPE" "IRX4 WILD-TYPE" 
    TCGA-IB-A5ST     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
"IRX4 WILD-TYPE" "IRX4 WILD-TYPE" "IRX4 WILD-TYPE" "IRX4 WILD-TYPE" 
    TCGA-PZ-A5RE     TCGA-Q3-A5QY     TCGA-US-A779     TCGA-US-A77E 
"IRX4 WILD-TYPE" "IRX4 WILD-TYPE" "IRX4 WILD-TYPE" "IRX4 WILD-TYPE" 
    TCGA-US-A77J 
  "IRX4 MUTATED" 
[1] "hr=" "1.6"
D110V2, continuous
                vv
clus             STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  IRX4 MUTATED          0        0         1         8         0        1
  IRX4 WILD-TYPE        1        4        10        43         2        2
D110V3, multiclass
                vv
clus             T1+T2 T3+T4
  IRX4 MUTATED       0    10
  IRX4 WILD-TYPE     6    56
D110V4, multiclass
       clus
vv      IRX4 MUTATED IRX4 WILD-TYPE
  T1+T2            0              6
  T3+T4           10             56
D110V5, binary
                cls
clus              0  1
  IRX4 MUTATED    2  8
  IRX4 WILD-TYPE 15 46
[1] "tbl2"
                cls
clus             [,1] [,2]
  IRX4 MUTATED      2    8
  IRX4 WILD-TYPE   15   46
   clus
vv  IRX4 MUTATED IRX4 WILD-TYPE
  0            2             15
  1            8             46
                vv
clus             M0 M1 MX
  IRX4 MUTATED    5  1  4
  IRX4 WILD-TYPE 34  2 26
D110V6, multiclass
    clus
vv   IRX4 MUTATED IRX4 WILD-TYPE
  M0            5             34
  M1            1              2
  MX            4             26
D110V7, binary
                cls
clus              0  1
  IRX4 MUTATED    9  1
  IRX4 WILD-TYPE 27 35
[1] "tbl2"
                cls
clus             [,1] [,2]
  IRX4 MUTATED      9    1
  IRX4 WILD-TYPE   27   35
        clus
vv       IRX4 MUTATED IRX4 WILD-TYPE
  FEMALE            9             27
  MALE              1             35
                vv
clus             PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  IRX4 MUTATED                                    10
  IRX4 WILD-TYPE                                  55
                vv
clus             PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  IRX4 MUTATED                                       0
  IRX4 WILD-TYPE                                     4
                vv
clus             PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  IRX4 MUTATED                                                  0
  IRX4 WILD-TYPE                                                2
D110V8, multiclass
                                                  clus
vv                                                 IRX4 MUTATED IRX4 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                        10             55
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                       0              4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA            0              2
D110V9, continuous
[1] "Remove cluster labels:" "IRX4 MUTATED"          
clus
  IRX4 MUTATED IRX4 WILD-TYPE 
             1             21 
    TCGA-F2-6880     TCGA-FB-A4P5     TCGA-FB-A4P6     TCGA-FB-A5VM 
"IRX4 WILD-TYPE" "IRX4 WILD-TYPE" "IRX4 WILD-TYPE" "IRX4 WILD-TYPE" 
    TCGA-FB-A78T     TCGA-FB-A7DR     TCGA-H6-8124     TCGA-H6-A45N 
"IRX4 WILD-TYPE" "IRX4 WILD-TYPE" "IRX4 WILD-TYPE" "IRX4 WILD-TYPE" 
    TCGA-H8-A6C1     TCGA-IB-7644     TCGA-IB-7649     TCGA-IB-7651 
"IRX4 WILD-TYPE" "IRX4 WILD-TYPE" "IRX4 WILD-TYPE" "IRX4 WILD-TYPE" 
    TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7891     TCGA-IB-8126 
"IRX4 WILD-TYPE" "IRX4 WILD-TYPE" "IRX4 WILD-TYPE" "IRX4 WILD-TYPE" 
    TCGA-IB-8127     TCGA-IB-A5SS     TCGA-IB-A6UG     TCGA-LB-A7SX 
"IRX4 WILD-TYPE" "IRX4 WILD-TYPE" "IRX4 WILD-TYPE" "IRX4 WILD-TYPE" 
    TCGA-OE-A75W 
"IRX4 WILD-TYPE" 
D110V10, continuous
                vv
clus             R0 R1 RX
  IRX4 MUTATED    6  4  0
  IRX4 WILD-TYPE 36 20  2
D110V11, multiclass
    clus
vv   IRX4 MUTATED IRX4 WILD-TYPE
  R0            6             36
  R1            4             20
  RX            0              2
D110V12, continuous

Clustering(111) Variable = GTF3C3 MUTATION ANALYSIS
D111V1, survival
                  sevent
clus2               0  1
  GTF3C3 MUTATED    2  2
  GTF3C3 WILD-TYPE 38 27
  GTF3C3 MUTATED GTF3C3 WILD-TYPE 
               4               65 
  GTF3C3 MUTATED GTF3C3 WILD-TYPE 
               2               27 
$`GTF3C3 MUTATED`
TCGA-HZ-8317 TCGA-IB-7888 TCGA-IB-7890 TCGA-IB-7891 
        0.53        43.79        19.66        16.04 

$`GTF3C3 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P5 TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR 
        0.13        11.93        12.66         2.47         0.03         5.46 
TCGA-FZ-5920 TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 
        2.01        36.20        20.81        12.89         7.66        13.02 
TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 
        7.89         0.92         0.66         0.13         0.26        12.13 
TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 
       11.87         0.26         0.62         0.79         0.69         3.95 
TCGA-HZ-8315 TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH 
        0.92         0.16         2.99         0.76         0.95         6.38 
TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 
        1.51        11.41        49.38         4.77        21.90        15.35 
TCGA-IB-7651 TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7889 
       19.82        15.65        27.98         4.04         3.62        15.81 
TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP 
        3.85        15.98         0.56        17.16        10.82         9.86 
TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W 
        7.20        15.12         0.26         1.35         4.18         3.62 
TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
        8.12        13.68        16.80        14.14        18.67 

  GTF3C3 MUTATED GTF3C3 WILD-TYPE 
            0.53             0.03 
  GTF3C3 MUTATED GTF3C3 WILD-TYPE 
           43.79            49.38 
  GTF3C3 MUTATED GTF3C3 WILD-TYPE 
           17.85             7.20 
[1] "0.5 - 43.8 (17.9)" "0.0 - 49.4 (7.2)" 
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
"GTF3C3 WILD-TYPE" "GTF3C3 WILD-TYPE" "GTF3C3 WILD-TYPE" "GTF3C3 WILD-TYPE" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"GTF3C3 WILD-TYPE" "GTF3C3 WILD-TYPE" "GTF3C3 WILD-TYPE" "GTF3C3 WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
"GTF3C3 WILD-TYPE" "GTF3C3 WILD-TYPE" "GTF3C3 WILD-TYPE" "GTF3C3 WILD-TYPE" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"GTF3C3 WILD-TYPE" "GTF3C3 WILD-TYPE" "GTF3C3 WILD-TYPE" "GTF3C3 WILD-TYPE" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
"GTF3C3 WILD-TYPE" "GTF3C3 WILD-TYPE" "GTF3C3 WILD-TYPE" "GTF3C3 WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
"GTF3C3 WILD-TYPE" "GTF3C3 WILD-TYPE" "GTF3C3 WILD-TYPE" "GTF3C3 WILD-TYPE" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"GTF3C3 WILD-TYPE" "GTF3C3 WILD-TYPE" "GTF3C3 WILD-TYPE" "GTF3C3 WILD-TYPE" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
"GTF3C3 WILD-TYPE" "GTF3C3 WILD-TYPE" "GTF3C3 WILD-TYPE"   "GTF3C3 MUTATED" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
"GTF3C3 WILD-TYPE" "GTF3C3 WILD-TYPE" "GTF3C3 WILD-TYPE" "GTF3C3 WILD-TYPE" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
"GTF3C3 WILD-TYPE" "GTF3C3 WILD-TYPE" "GTF3C3 WILD-TYPE" "GTF3C3 WILD-TYPE" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
"GTF3C3 WILD-TYPE" "GTF3C3 WILD-TYPE" "GTF3C3 WILD-TYPE" "GTF3C3 WILD-TYPE" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
"GTF3C3 WILD-TYPE" "GTF3C3 WILD-TYPE" "GTF3C3 WILD-TYPE" "GTF3C3 WILD-TYPE" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
  "GTF3C3 MUTATED" "GTF3C3 WILD-TYPE"   "GTF3C3 MUTATED"   "GTF3C3 MUTATED" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
"GTF3C3 WILD-TYPE" "GTF3C3 WILD-TYPE" "GTF3C3 WILD-TYPE" "GTF3C3 WILD-TYPE" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"GTF3C3 WILD-TYPE" "GTF3C3 WILD-TYPE" "GTF3C3 WILD-TYPE" "GTF3C3 WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"GTF3C3 WILD-TYPE" "GTF3C3 WILD-TYPE" "GTF3C3 WILD-TYPE" "GTF3C3 WILD-TYPE" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
"GTF3C3 WILD-TYPE" "GTF3C3 WILD-TYPE" "GTF3C3 WILD-TYPE" "GTF3C3 WILD-TYPE" 
      TCGA-US-A77J 
"GTF3C3 WILD-TYPE" 
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
"GTF3C3 WILD-TYPE" "GTF3C3 WILD-TYPE" "GTF3C3 WILD-TYPE" "GTF3C3 WILD-TYPE" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"GTF3C3 WILD-TYPE" "GTF3C3 WILD-TYPE" "GTF3C3 WILD-TYPE" "GTF3C3 WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
"GTF3C3 WILD-TYPE" "GTF3C3 WILD-TYPE" "GTF3C3 WILD-TYPE" "GTF3C3 WILD-TYPE" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"GTF3C3 WILD-TYPE" "GTF3C3 WILD-TYPE" "GTF3C3 WILD-TYPE" "GTF3C3 WILD-TYPE" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
"GTF3C3 WILD-TYPE" "GTF3C3 WILD-TYPE" "GTF3C3 WILD-TYPE" "GTF3C3 WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
"GTF3C3 WILD-TYPE" "GTF3C3 WILD-TYPE" "GTF3C3 WILD-TYPE" "GTF3C3 WILD-TYPE" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"GTF3C3 WILD-TYPE" "GTF3C3 WILD-TYPE" "GTF3C3 WILD-TYPE" "GTF3C3 WILD-TYPE" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
"GTF3C3 WILD-TYPE" "GTF3C3 WILD-TYPE" "GTF3C3 WILD-TYPE"   "GTF3C3 MUTATED" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
"GTF3C3 WILD-TYPE" "GTF3C3 WILD-TYPE" "GTF3C3 WILD-TYPE" "GTF3C3 WILD-TYPE" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
"GTF3C3 WILD-TYPE" "GTF3C3 WILD-TYPE" "GTF3C3 WILD-TYPE" "GTF3C3 WILD-TYPE" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
"GTF3C3 WILD-TYPE" "GTF3C3 WILD-TYPE" "GTF3C3 WILD-TYPE" "GTF3C3 WILD-TYPE" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
"GTF3C3 WILD-TYPE" "GTF3C3 WILD-TYPE" "GTF3C3 WILD-TYPE" "GTF3C3 WILD-TYPE" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
  "GTF3C3 MUTATED" "GTF3C3 WILD-TYPE"   "GTF3C3 MUTATED"   "GTF3C3 MUTATED" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
"GTF3C3 WILD-TYPE" "GTF3C3 WILD-TYPE" "GTF3C3 WILD-TYPE" "GTF3C3 WILD-TYPE" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"GTF3C3 WILD-TYPE" "GTF3C3 WILD-TYPE" "GTF3C3 WILD-TYPE" "GTF3C3 WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"GTF3C3 WILD-TYPE" "GTF3C3 WILD-TYPE" "GTF3C3 WILD-TYPE" "GTF3C3 WILD-TYPE" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
"GTF3C3 WILD-TYPE" "GTF3C3 WILD-TYPE" "GTF3C3 WILD-TYPE" "GTF3C3 WILD-TYPE" 
      TCGA-US-A77J 
"GTF3C3 WILD-TYPE" 
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
"GTF3C3 WILD-TYPE" "GTF3C3 WILD-TYPE" "GTF3C3 WILD-TYPE" "GTF3C3 WILD-TYPE" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"GTF3C3 WILD-TYPE" "GTF3C3 WILD-TYPE" "GTF3C3 WILD-TYPE" "GTF3C3 WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
"GTF3C3 WILD-TYPE" "GTF3C3 WILD-TYPE" "GTF3C3 WILD-TYPE" "GTF3C3 WILD-TYPE" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"GTF3C3 WILD-TYPE" "GTF3C3 WILD-TYPE" "GTF3C3 WILD-TYPE" "GTF3C3 WILD-TYPE" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
"GTF3C3 WILD-TYPE" "GTF3C3 WILD-TYPE" "GTF3C3 WILD-TYPE" "GTF3C3 WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
"GTF3C3 WILD-TYPE" "GTF3C3 WILD-TYPE" "GTF3C3 WILD-TYPE" "GTF3C3 WILD-TYPE" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"GTF3C3 WILD-TYPE" "GTF3C3 WILD-TYPE" "GTF3C3 WILD-TYPE" "GTF3C3 WILD-TYPE" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
"GTF3C3 WILD-TYPE" "GTF3C3 WILD-TYPE" "GTF3C3 WILD-TYPE"   "GTF3C3 MUTATED" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
"GTF3C3 WILD-TYPE" "GTF3C3 WILD-TYPE" "GTF3C3 WILD-TYPE" "GTF3C3 WILD-TYPE" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
"GTF3C3 WILD-TYPE" "GTF3C3 WILD-TYPE" "GTF3C3 WILD-TYPE" "GTF3C3 WILD-TYPE" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
"GTF3C3 WILD-TYPE" "GTF3C3 WILD-TYPE" "GTF3C3 WILD-TYPE" "GTF3C3 WILD-TYPE" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
"GTF3C3 WILD-TYPE" "GTF3C3 WILD-TYPE" "GTF3C3 WILD-TYPE" "GTF3C3 WILD-TYPE" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
  "GTF3C3 MUTATED" "GTF3C3 WILD-TYPE"   "GTF3C3 MUTATED"   "GTF3C3 MUTATED" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
"GTF3C3 WILD-TYPE" "GTF3C3 WILD-TYPE" "GTF3C3 WILD-TYPE" "GTF3C3 WILD-TYPE" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"GTF3C3 WILD-TYPE" "GTF3C3 WILD-TYPE" "GTF3C3 WILD-TYPE" "GTF3C3 WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"GTF3C3 WILD-TYPE" "GTF3C3 WILD-TYPE" "GTF3C3 WILD-TYPE" "GTF3C3 WILD-TYPE" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
"GTF3C3 WILD-TYPE" "GTF3C3 WILD-TYPE" "GTF3C3 WILD-TYPE" "GTF3C3 WILD-TYPE" 
      TCGA-US-A77J 
"GTF3C3 WILD-TYPE" 
[1] "hr=" "2.3"
D111V2, continuous
                  vv
clus               STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  GTF3C3 MUTATED          0        1         1         2         0        0
  GTF3C3 WILD-TYPE        1        3        10        49         2        3
D111V3, multiclass
                  vv
clus               T1+T2 T3+T4
  GTF3C3 MUTATED       1     3
  GTF3C3 WILD-TYPE     5    63
D111V4, multiclass
       clus
vv      GTF3C3 MUTATED GTF3C3 WILD-TYPE
  T1+T2              1                5
  T3+T4              3               63
D111V5, binary
                  cls
clus                0  1
  GTF3C3 MUTATED    2  2
  GTF3C3 WILD-TYPE 15 52
[1] "tbl2"
                  cls
clus               [,1] [,2]
  GTF3C3 MUTATED      2    2
  GTF3C3 WILD-TYPE   15   52
   clus
vv  GTF3C3 MUTATED GTF3C3 WILD-TYPE
  0              2               15
  1              2               52
                  vv
clus               M0 M1 MX
  GTF3C3 MUTATED    3  0  1
  GTF3C3 WILD-TYPE 36  3 29
D111V6, multiclass
    clus
vv   GTF3C3 MUTATED GTF3C3 WILD-TYPE
  M0              3               36
  M1              0                3
  MX              1               29
D111V7, binary
                  cls
clus                0  1
  GTF3C3 MUTATED    2  2
  GTF3C3 WILD-TYPE 34 34
[1] "tbl2"
                  cls
clus               [,1] [,2]
  GTF3C3 MUTATED      2    2
  GTF3C3 WILD-TYPE   34   34
        clus
vv       GTF3C3 MUTATED GTF3C3 WILD-TYPE
  FEMALE              2               34
  MALE                2               34
                  vv
clus               PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  GTF3C3 MUTATED                                     4
  GTF3C3 WILD-TYPE                                  61
                  vv
clus               PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  GTF3C3 MUTATED                                       0
  GTF3C3 WILD-TYPE                                     4
                  vv
clus               PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  GTF3C3 MUTATED                                                  0
  GTF3C3 WILD-TYPE                                                2
D111V8, multiclass
                                                  clus
vv                                                 GTF3C3 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                           4
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                         0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA              0
                                                  clus
vv                                                 GTF3C3 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                            61
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                           4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                2
D111V9, continuous
[1] "Remove cluster labels:" "GTF3C3 MUTATED"        
clus
  GTF3C3 MUTATED GTF3C3 WILD-TYPE 
               1               21 
      TCGA-F2-6880       TCGA-FB-A4P5       TCGA-FB-A4P6       TCGA-FB-A5VM 
"GTF3C3 WILD-TYPE" "GTF3C3 WILD-TYPE" "GTF3C3 WILD-TYPE" "GTF3C3 WILD-TYPE" 
      TCGA-FB-A78T       TCGA-FB-A7DR       TCGA-H6-8124       TCGA-H6-A45N 
"GTF3C3 WILD-TYPE" "GTF3C3 WILD-TYPE" "GTF3C3 WILD-TYPE" "GTF3C3 WILD-TYPE" 
      TCGA-H8-A6C1       TCGA-IB-7644       TCGA-IB-7649       TCGA-IB-7651 
"GTF3C3 WILD-TYPE" "GTF3C3 WILD-TYPE" "GTF3C3 WILD-TYPE" "GTF3C3 WILD-TYPE" 
      TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887       TCGA-IB-8126 
"GTF3C3 WILD-TYPE" "GTF3C3 WILD-TYPE" "GTF3C3 WILD-TYPE" "GTF3C3 WILD-TYPE" 
      TCGA-IB-8127       TCGA-IB-A5SS       TCGA-IB-A6UG       TCGA-LB-A7SX 
"GTF3C3 WILD-TYPE" "GTF3C3 WILD-TYPE" "GTF3C3 WILD-TYPE" "GTF3C3 WILD-TYPE" 
      TCGA-OE-A75W 
"GTF3C3 WILD-TYPE" 
D111V10, continuous
[1] "Remove cluster labels:" "GTF3C3 MUTATED"        
clus
  GTF3C3 MUTATED GTF3C3 WILD-TYPE 
               1               18 
      TCGA-FB-A4P5       TCGA-FB-A4P6       TCGA-FB-A5VM       TCGA-FB-A78T 
"GTF3C3 WILD-TYPE" "GTF3C3 WILD-TYPE" "GTF3C3 WILD-TYPE" "GTF3C3 WILD-TYPE" 
      TCGA-FB-A7DR       TCGA-H6-8124       TCGA-H8-A6C1       TCGA-IB-7644 
"GTF3C3 WILD-TYPE" "GTF3C3 WILD-TYPE" "GTF3C3 WILD-TYPE" "GTF3C3 WILD-TYPE" 
      TCGA-IB-7649       TCGA-IB-7651       TCGA-IB-7885       TCGA-IB-7886 
"GTF3C3 WILD-TYPE" "GTF3C3 WILD-TYPE" "GTF3C3 WILD-TYPE" "GTF3C3 WILD-TYPE" 
      TCGA-IB-8126       TCGA-IB-8127       TCGA-IB-A5SS       TCGA-IB-A6UG 
"GTF3C3 WILD-TYPE" "GTF3C3 WILD-TYPE" "GTF3C3 WILD-TYPE" "GTF3C3 WILD-TYPE" 
      TCGA-LB-A7SX       TCGA-OE-A75W 
"GTF3C3 WILD-TYPE" "GTF3C3 WILD-TYPE" 
                  vv
clus               R0 R1 RX
  GTF3C3 MUTATED    3  1  0
  GTF3C3 WILD-TYPE 39 23  2
D111V11, multiclass
    clus
vv   GTF3C3 MUTATED GTF3C3 WILD-TYPE
  R0              3               39
  R1              1               23
  RX              0                2
D111V12, continuous

Clustering(112) Variable = NAP1L3 MUTATION ANALYSIS
D112V1, survival
                  sevent
clus2               0  1
  NAP1L3 MUTATED    4  1
  NAP1L3 WILD-TYPE 36 28
  NAP1L3 MUTATED NAP1L3 WILD-TYPE 
               5               64 
  NAP1L3 MUTATED NAP1L3 WILD-TYPE 
               1               28 
$`NAP1L3 MUTATED`
TCGA-HZ-7919 TCGA-HZ-8003 TCGA-HZ-8315 TCGA-HZ-A49G TCGA-IB-7887 
        0.66         0.69         0.92         0.76         3.62 

$`NAP1L3 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P5 TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR 
        0.13        11.93        12.66         2.47         0.03         5.46 
TCGA-FZ-5920 TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 
        2.01        36.20        20.81        12.89         7.66        13.02 
TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 
        7.89         0.92         0.13         0.26        12.13        11.87 
TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8005 TCGA-HZ-8317 TCGA-HZ-8636 
        0.26         0.62         0.79         3.95         0.53         0.16 
TCGA-HZ-8638 TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7645 
        2.99         0.95         6.38         1.51        11.41        49.38 
TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7651 TCGA-IB-7652 TCGA-IB-7885 
        4.77        21.90        15.35        19.82        15.65        27.98 
TCGA-IB-7886 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-7893 
        4.04        43.79        15.81        19.66        16.04         3.85 
TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ 
       15.98         0.56        17.16        10.82         9.86         7.20 
TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W TCGA-PZ-A5RE 
       15.12         0.26         1.35         4.18         3.62         8.12 
TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
       13.68        16.80        14.14        18.67 

  NAP1L3 MUTATED NAP1L3 WILD-TYPE 
            0.66             0.03 
  NAP1L3 MUTATED NAP1L3 WILD-TYPE 
            3.62            49.38 
  NAP1L3 MUTATED NAP1L3 WILD-TYPE 
            0.76             8.91 
[1] "0.7 - 3.6 (0.8)"  "0.0 - 49.4 (8.9)"
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
"NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
"NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
"NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
  "NAP1L3 MUTATED" "NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
  "NAP1L3 MUTATED" "NAP1L3 WILD-TYPE"   "NAP1L3 MUTATED" "NAP1L3 WILD-TYPE" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
"NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE"   "NAP1L3 MUTATED" "NAP1L3 WILD-TYPE" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
"NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
"NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
"NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE"   "NAP1L3 MUTATED" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
"NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
"NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
"NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" 
      TCGA-US-A77J 
"NAP1L3 WILD-TYPE" 
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
"NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
"NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
"NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
  "NAP1L3 MUTATED" "NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
  "NAP1L3 MUTATED" "NAP1L3 WILD-TYPE"   "NAP1L3 MUTATED" "NAP1L3 WILD-TYPE" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
"NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE"   "NAP1L3 MUTATED" "NAP1L3 WILD-TYPE" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
"NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
"NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
"NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE"   "NAP1L3 MUTATED" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
"NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
"NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
"NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" 
      TCGA-US-A77J 
"NAP1L3 WILD-TYPE" 
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
"NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
"NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
"NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
  "NAP1L3 MUTATED" "NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
  "NAP1L3 MUTATED" "NAP1L3 WILD-TYPE"   "NAP1L3 MUTATED" "NAP1L3 WILD-TYPE" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
"NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE"   "NAP1L3 MUTATED" "NAP1L3 WILD-TYPE" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
"NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
"NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
"NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE"   "NAP1L3 MUTATED" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
"NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
"NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
"NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" 
      TCGA-US-A77J 
"NAP1L3 WILD-TYPE" 
[1] "hr=" "11" 
D112V2, continuous
                  vv
clus               STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  NAP1L3 MUTATED          0        1         1         4         0        0
  NAP1L3 WILD-TYPE        1        3        10        47         2        3
D112V3, multiclass
                  vv
clus               T1+T2 T3+T4
  NAP1L3 MUTATED       2     4
  NAP1L3 WILD-TYPE     4    62
D112V4, multiclass
       clus
vv      NAP1L3 MUTATED NAP1L3 WILD-TYPE
  T1+T2              2                4
  T3+T4              4               62
D112V5, binary
                  cls
clus                0  1
  NAP1L3 MUTATED    2  4
  NAP1L3 WILD-TYPE 15 50
[1] "tbl2"
                  cls
clus               [,1] [,2]
  NAP1L3 MUTATED      2    4
  NAP1L3 WILD-TYPE   15   50
   clus
vv  NAP1L3 MUTATED NAP1L3 WILD-TYPE
  0              2               15
  1              4               50
                  vv
clus               M0 M1 MX
  NAP1L3 MUTATED    2  0  4
  NAP1L3 WILD-TYPE 37  3 26
D112V6, multiclass
    clus
vv   NAP1L3 MUTATED NAP1L3 WILD-TYPE
  M0              2               37
  M1              0                3
  MX              4               26
D112V7, binary
                  cls
clus                0  1
  NAP1L3 MUTATED    5  1
  NAP1L3 WILD-TYPE 31 35
[1] "tbl2"
                  cls
clus               [,1] [,2]
  NAP1L3 MUTATED      5    1
  NAP1L3 WILD-TYPE   31   35
        clus
vv       NAP1L3 MUTATED NAP1L3 WILD-TYPE
  FEMALE              5               31
  MALE                1               35
                  vv
clus               PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  NAP1L3 MUTATED                                     6
  NAP1L3 WILD-TYPE                                  59
                  vv
clus               PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  NAP1L3 MUTATED                                       0
  NAP1L3 WILD-TYPE                                     4
                  vv
clus               PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  NAP1L3 MUTATED                                                  0
  NAP1L3 WILD-TYPE                                                2
D112V8, multiclass
                                                  clus
vv                                                 NAP1L3 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                           6
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                         0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA              0
                                                  clus
vv                                                 NAP1L3 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                            59
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                           4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                2
D112V9, continuous
[1] "Remove cluster labels:" "NAP1L3 MUTATED"        
clus
  NAP1L3 MUTATED NAP1L3 WILD-TYPE 
               1               21 
      TCGA-F2-6880       TCGA-FB-A4P5       TCGA-FB-A4P6       TCGA-FB-A5VM 
"NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" 
      TCGA-FB-A78T       TCGA-FB-A7DR       TCGA-H6-8124       TCGA-H6-A45N 
"NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" 
      TCGA-H8-A6C1       TCGA-IB-7644       TCGA-IB-7649       TCGA-IB-7651 
"NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" 
      TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7891       TCGA-IB-8126 
"NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" 
      TCGA-IB-8127       TCGA-IB-A5SS       TCGA-IB-A6UG       TCGA-LB-A7SX 
"NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" "NAP1L3 WILD-TYPE" 
      TCGA-OE-A75W 
"NAP1L3 WILD-TYPE" 
D112V10, continuous
                  vv
clus               R0 R1 RX
  NAP1L3 MUTATED    2  4  0
  NAP1L3 WILD-TYPE 40 20  2
D112V11, multiclass
    clus
vv   NAP1L3 MUTATED NAP1L3 WILD-TYPE
  R0              2               40
  R1              4               20
  RX              0                2
D112V12, continuous

Clustering(113) Variable = TMEM40 MUTATION ANALYSIS
D113V1, survival
                  sevent
clus2               0  1
  TMEM40 MUTATED    5  8
  TMEM40 WILD-TYPE 35 21
  TMEM40 MUTATED TMEM40 WILD-TYPE 
              13               56 
  TMEM40 MUTATED TMEM40 WILD-TYPE 
               8               21 
$`TMEM40 MUTATED`
TCGA-F2-7276 TCGA-FB-A4P6 TCGA-H6-A45N TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-8003 
        7.10        11.93         7.66         0.66         0.13         0.69 
TCGA-HZ-8005 TCGA-HZ-8317 TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7886 TCGA-IB-7890 
        3.95         0.53        11.41        49.38         4.04        19.66 
TCGA-IB-7897 
       15.98 

$`TMEM40 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-A44G TCGA-F2-A44H TCGA-FB-A4P5 
       10.98         9.70        11.84         5.03        19.27         0.13 
TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR TCGA-FZ-5920 TCGA-FZ-5922 
       12.66         2.47         0.03         5.46         2.01        36.20 
TCGA-FZ-5923 TCGA-H6-8124 TCGA-H8-A6C1 TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-7923 
       20.81        12.89        13.02         7.89         0.92         0.26 
TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8315 
       12.13        11.87         0.26         0.62         0.79         0.92 
TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK 
        0.16         2.99         0.76         0.95         6.38         1.51 
TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7651 TCGA-IB-7652 TCGA-IB-7885 
        4.77        21.90        15.35        19.82        15.65        27.98 
TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-8126 
        3.62        43.79        15.81        16.04         3.85         0.56 
TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST 
       17.16        10.82         9.86         7.20        15.12         0.26 
TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 
        1.35         4.18         3.62         8.12        13.68        16.80 
TCGA-US-A77E TCGA-US-A77J 
       14.14        18.67 

  TMEM40 MUTATED TMEM40 WILD-TYPE 
            0.13             0.03 
  TMEM40 MUTATED TMEM40 WILD-TYPE 
           49.38            43.79 
  TMEM40 MUTATED TMEM40 WILD-TYPE 
           7.100            8.005 
[1] "0.1 - 49.4 (7.1)" "0.0 - 43.8 (8.0)"
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
"TMEM40 WILD-TYPE" "TMEM40 WILD-TYPE" "TMEM40 WILD-TYPE"   "TMEM40 MUTATED" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"TMEM40 WILD-TYPE" "TMEM40 WILD-TYPE" "TMEM40 WILD-TYPE"   "TMEM40 MUTATED" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
"TMEM40 WILD-TYPE" "TMEM40 WILD-TYPE" "TMEM40 WILD-TYPE" "TMEM40 WILD-TYPE" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"TMEM40 WILD-TYPE" "TMEM40 WILD-TYPE" "TMEM40 WILD-TYPE" "TMEM40 WILD-TYPE" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
  "TMEM40 MUTATED" "TMEM40 WILD-TYPE" "TMEM40 WILD-TYPE" "TMEM40 WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
  "TMEM40 MUTATED"   "TMEM40 MUTATED" "TMEM40 WILD-TYPE" "TMEM40 WILD-TYPE" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"TMEM40 WILD-TYPE" "TMEM40 WILD-TYPE" "TMEM40 WILD-TYPE" "TMEM40 WILD-TYPE" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
  "TMEM40 MUTATED"   "TMEM40 MUTATED" "TMEM40 WILD-TYPE"   "TMEM40 MUTATED" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
"TMEM40 WILD-TYPE" "TMEM40 WILD-TYPE" "TMEM40 WILD-TYPE" "TMEM40 WILD-TYPE" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
"TMEM40 WILD-TYPE" "TMEM40 WILD-TYPE"   "TMEM40 MUTATED"   "TMEM40 MUTATED" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
"TMEM40 WILD-TYPE" "TMEM40 WILD-TYPE" "TMEM40 WILD-TYPE" "TMEM40 WILD-TYPE" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
"TMEM40 WILD-TYPE" "TMEM40 WILD-TYPE"   "TMEM40 MUTATED" "TMEM40 WILD-TYPE" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
"TMEM40 WILD-TYPE" "TMEM40 WILD-TYPE"   "TMEM40 MUTATED" "TMEM40 WILD-TYPE" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
"TMEM40 WILD-TYPE"   "TMEM40 MUTATED" "TMEM40 WILD-TYPE" "TMEM40 WILD-TYPE" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"TMEM40 WILD-TYPE" "TMEM40 WILD-TYPE" "TMEM40 WILD-TYPE" "TMEM40 WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"TMEM40 WILD-TYPE" "TMEM40 WILD-TYPE" "TMEM40 WILD-TYPE" "TMEM40 WILD-TYPE" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
"TMEM40 WILD-TYPE" "TMEM40 WILD-TYPE" "TMEM40 WILD-TYPE" "TMEM40 WILD-TYPE" 
      TCGA-US-A77J 
"TMEM40 WILD-TYPE" 
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
"TMEM40 WILD-TYPE" "TMEM40 WILD-TYPE" "TMEM40 WILD-TYPE"   "TMEM40 MUTATED" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"TMEM40 WILD-TYPE" "TMEM40 WILD-TYPE" "TMEM40 WILD-TYPE"   "TMEM40 MUTATED" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
"TMEM40 WILD-TYPE" "TMEM40 WILD-TYPE" "TMEM40 WILD-TYPE" "TMEM40 WILD-TYPE" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"TMEM40 WILD-TYPE" "TMEM40 WILD-TYPE" "TMEM40 WILD-TYPE" "TMEM40 WILD-TYPE" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
  "TMEM40 MUTATED" "TMEM40 WILD-TYPE" "TMEM40 WILD-TYPE" "TMEM40 WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
  "TMEM40 MUTATED"   "TMEM40 MUTATED" "TMEM40 WILD-TYPE" "TMEM40 WILD-TYPE" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"TMEM40 WILD-TYPE" "TMEM40 WILD-TYPE" "TMEM40 WILD-TYPE" "TMEM40 WILD-TYPE" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
  "TMEM40 MUTATED"   "TMEM40 MUTATED" "TMEM40 WILD-TYPE"   "TMEM40 MUTATED" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
"TMEM40 WILD-TYPE" "TMEM40 WILD-TYPE" "TMEM40 WILD-TYPE" "TMEM40 WILD-TYPE" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
"TMEM40 WILD-TYPE" "TMEM40 WILD-TYPE"   "TMEM40 MUTATED"   "TMEM40 MUTATED" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
"TMEM40 WILD-TYPE" "TMEM40 WILD-TYPE" "TMEM40 WILD-TYPE" "TMEM40 WILD-TYPE" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
"TMEM40 WILD-TYPE" "TMEM40 WILD-TYPE"   "TMEM40 MUTATED" "TMEM40 WILD-TYPE" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
"TMEM40 WILD-TYPE" "TMEM40 WILD-TYPE"   "TMEM40 MUTATED" "TMEM40 WILD-TYPE" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
"TMEM40 WILD-TYPE"   "TMEM40 MUTATED" "TMEM40 WILD-TYPE" "TMEM40 WILD-TYPE" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"TMEM40 WILD-TYPE" "TMEM40 WILD-TYPE" "TMEM40 WILD-TYPE" "TMEM40 WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"TMEM40 WILD-TYPE" "TMEM40 WILD-TYPE" "TMEM40 WILD-TYPE" "TMEM40 WILD-TYPE" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
"TMEM40 WILD-TYPE" "TMEM40 WILD-TYPE" "TMEM40 WILD-TYPE" "TMEM40 WILD-TYPE" 
      TCGA-US-A77J 
"TMEM40 WILD-TYPE" 
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
"TMEM40 WILD-TYPE" "TMEM40 WILD-TYPE" "TMEM40 WILD-TYPE"   "TMEM40 MUTATED" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"TMEM40 WILD-TYPE" "TMEM40 WILD-TYPE" "TMEM40 WILD-TYPE"   "TMEM40 MUTATED" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
"TMEM40 WILD-TYPE" "TMEM40 WILD-TYPE" "TMEM40 WILD-TYPE" "TMEM40 WILD-TYPE" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"TMEM40 WILD-TYPE" "TMEM40 WILD-TYPE" "TMEM40 WILD-TYPE" "TMEM40 WILD-TYPE" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
  "TMEM40 MUTATED" "TMEM40 WILD-TYPE" "TMEM40 WILD-TYPE" "TMEM40 WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
  "TMEM40 MUTATED"   "TMEM40 MUTATED" "TMEM40 WILD-TYPE" "TMEM40 WILD-TYPE" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"TMEM40 WILD-TYPE" "TMEM40 WILD-TYPE" "TMEM40 WILD-TYPE" "TMEM40 WILD-TYPE" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
  "TMEM40 MUTATED"   "TMEM40 MUTATED" "TMEM40 WILD-TYPE"   "TMEM40 MUTATED" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
"TMEM40 WILD-TYPE" "TMEM40 WILD-TYPE" "TMEM40 WILD-TYPE" "TMEM40 WILD-TYPE" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
"TMEM40 WILD-TYPE" "TMEM40 WILD-TYPE"   "TMEM40 MUTATED"   "TMEM40 MUTATED" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
"TMEM40 WILD-TYPE" "TMEM40 WILD-TYPE" "TMEM40 WILD-TYPE" "TMEM40 WILD-TYPE" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
"TMEM40 WILD-TYPE" "TMEM40 WILD-TYPE"   "TMEM40 MUTATED" "TMEM40 WILD-TYPE" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
"TMEM40 WILD-TYPE" "TMEM40 WILD-TYPE"   "TMEM40 MUTATED" "TMEM40 WILD-TYPE" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
"TMEM40 WILD-TYPE"   "TMEM40 MUTATED" "TMEM40 WILD-TYPE" "TMEM40 WILD-TYPE" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"TMEM40 WILD-TYPE" "TMEM40 WILD-TYPE" "TMEM40 WILD-TYPE" "TMEM40 WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"TMEM40 WILD-TYPE" "TMEM40 WILD-TYPE" "TMEM40 WILD-TYPE" "TMEM40 WILD-TYPE" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
"TMEM40 WILD-TYPE" "TMEM40 WILD-TYPE" "TMEM40 WILD-TYPE" "TMEM40 WILD-TYPE" 
      TCGA-US-A77J 
"TMEM40 WILD-TYPE" 
[1] "hr=" "1.4"
D113V2, continuous
                  vv
clus               STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  TMEM40 MUTATED          0        1         0        11         0        1
  TMEM40 WILD-TYPE        1        3        11        40         2        2
D113V3, multiclass
                  vv
clus               T1+T2 T3+T4
  TMEM40 MUTATED       1    12
  TMEM40 WILD-TYPE     5    54
D113V4, multiclass
       clus
vv      TMEM40 MUTATED TMEM40 WILD-TYPE
  T1+T2              1                5
  T3+T4             12               54
D113V5, binary
                  cls
clus                0  1
  TMEM40 MUTATED    1 12
  TMEM40 WILD-TYPE 16 42
[1] "tbl2"
                  cls
clus               [,1] [,2]
  TMEM40 MUTATED      1   12
  TMEM40 WILD-TYPE   16   42
   clus
vv  TMEM40 MUTATED TMEM40 WILD-TYPE
  0              1               16
  1             12               42
                  vv
clus               M0 M1 MX
  TMEM40 MUTATED    6  1  6
  TMEM40 WILD-TYPE 33  2 24
D113V6, multiclass
    clus
vv   TMEM40 MUTATED TMEM40 WILD-TYPE
  M0              6               33
  M1              1                2
  MX              6               24
D113V7, binary
                  cls
clus                0  1
  TMEM40 MUTATED    8  5
  TMEM40 WILD-TYPE 28 31
[1] "tbl2"
                  cls
clus               [,1] [,2]
  TMEM40 MUTATED      8    5
  TMEM40 WILD-TYPE   28   31
        clus
vv       TMEM40 MUTATED TMEM40 WILD-TYPE
  FEMALE              8               28
  MALE                5               31
                  vv
clus               PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  TMEM40 MUTATED                                    12
  TMEM40 WILD-TYPE                                  53
                  vv
clus               PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  TMEM40 MUTATED                                       1
  TMEM40 WILD-TYPE                                     3
                  vv
clus               PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  TMEM40 MUTATED                                                  0
  TMEM40 WILD-TYPE                                                2
D113V8, multiclass
                                                  clus
vv                                                 TMEM40 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                          12
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                         1
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA              0
                                                  clus
vv                                                 TMEM40 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                            53
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                           3
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                2
D113V9, continuous
D113V10, continuous
                  vv
clus               R0 R1 RX
  TMEM40 MUTATED    6  5  0
  TMEM40 WILD-TYPE 36 19  2
D113V11, multiclass
    clus
vv   TMEM40 MUTATED TMEM40 WILD-TYPE
  R0              6               36
  R1              5               19
  RX              0                2
D113V12, continuous

Clustering(114) Variable = MED9 MUTATION ANALYSIS
D114V1, survival
                sevent
clus2             0  1
  MED9 MUTATED    7  7
  MED9 WILD-TYPE 33 22
  MED9 MUTATED MED9 WILD-TYPE 
            14             55 
  MED9 MUTATED MED9 WILD-TYPE 
             7             22 
$`MED9 MUTATED`
TCGA-FB-A4P6 TCGA-H6-8124 TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-8005 
       11.93        12.89         0.66         0.13         0.26         3.95 
TCGA-HZ-8636 TCGA-IB-7644 TCGA-IB-7647 TCGA-IB-7651 TCGA-IB-7888 TCGA-IB-7889 
        0.16        11.41        21.90        19.82        43.79        15.81 
TCGA-IB-7890 TCGA-OE-A75W 
       19.66         3.62 

$`MED9 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P5 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR TCGA-FZ-5920 
        0.13        12.66         2.47         0.03         5.46         2.01 
TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7289 TCGA-HZ-7918 
       36.20        20.81         7.66        13.02         7.89         0.92 
TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 
       12.13        11.87         0.26         0.62         0.79         0.69 
TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH 
        0.92         0.53         2.99         0.76         0.95         6.38 
TCGA-HZ-A4BK TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7649 TCGA-IB-7652 TCGA-IB-7885 
        1.51        49.38         4.77        15.35        15.65        27.98 
TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-8126 
        4.04         3.62        16.04         3.85        15.98         0.56 
TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST 
       17.16        10.82         9.86         7.20        15.12         0.26 
TCGA-IB-A6UG TCGA-LB-A7SX TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E 
        1.35         4.18         8.12        13.68        16.80        14.14 
TCGA-US-A77J 
       18.67 

  MED9 MUTATED MED9 WILD-TYPE 
          0.13           0.03 
  MED9 MUTATED MED9 WILD-TYPE 
         43.79          49.38 
  MED9 MUTATED MED9 WILD-TYPE 
         11.67           7.20 
[1] "0.1 - 43.8 (11.7)" "0.0 - 49.4 (7.2)" 
    TCGA-F2-6879     TCGA-F2-6880     TCGA-F2-7273     TCGA-F2-7276 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-F2-A44G     TCGA-F2-A44H     TCGA-FB-A4P5     TCGA-FB-A4P6 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE"   "MED9 MUTATED" 
    TCGA-FB-A545     TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-FB-A7DR 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-FZ-5920     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-H6-8124 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE"   "MED9 MUTATED" 
    TCGA-H6-A45N     TCGA-H8-A6C1     TCGA-HZ-7289     TCGA-HZ-7918 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-HZ-7919     TCGA-HZ-7922     TCGA-HZ-7923     TCGA-HZ-7924 
  "MED9 MUTATED"   "MED9 MUTATED"   "MED9 MUTATED" "MED9 WILD-TYPE" 
    TCGA-HZ-7925     TCGA-HZ-7926     TCGA-HZ-8001     TCGA-HZ-8002 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-HZ-8003     TCGA-HZ-8005     TCGA-HZ-8315     TCGA-HZ-8317 
"MED9 WILD-TYPE"   "MED9 MUTATED" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-HZ-8636     TCGA-HZ-8638     TCGA-HZ-A49G     TCGA-HZ-A49H 
  "MED9 MUTATED" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-IB-7644     TCGA-IB-7645 
"MED9 WILD-TYPE" "MED9 WILD-TYPE"   "MED9 MUTATED" "MED9 WILD-TYPE" 
    TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7651 
"MED9 WILD-TYPE"   "MED9 MUTATED" "MED9 WILD-TYPE"   "MED9 MUTATED" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-IB-7888     TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891 
  "MED9 MUTATED"   "MED9 MUTATED"   "MED9 MUTATED" "MED9 WILD-TYPE" 
    TCGA-IB-7893     TCGA-IB-7897     TCGA-IB-8126     TCGA-IB-8127 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-IB-A5ST     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE"   "MED9 MUTATED" 
    TCGA-PZ-A5RE     TCGA-Q3-A5QY     TCGA-US-A779     TCGA-US-A77E 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-US-A77J 
"MED9 WILD-TYPE" 
    TCGA-F2-6879     TCGA-F2-6880     TCGA-F2-7273     TCGA-F2-7276 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-F2-A44G     TCGA-F2-A44H     TCGA-FB-A4P5     TCGA-FB-A4P6 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE"   "MED9 MUTATED" 
    TCGA-FB-A545     TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-FB-A7DR 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-FZ-5920     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-H6-8124 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE"   "MED9 MUTATED" 
    TCGA-H6-A45N     TCGA-H8-A6C1     TCGA-HZ-7289     TCGA-HZ-7918 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-HZ-7919     TCGA-HZ-7922     TCGA-HZ-7923     TCGA-HZ-7924 
  "MED9 MUTATED"   "MED9 MUTATED"   "MED9 MUTATED" "MED9 WILD-TYPE" 
    TCGA-HZ-7925     TCGA-HZ-7926     TCGA-HZ-8001     TCGA-HZ-8002 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-HZ-8003     TCGA-HZ-8005     TCGA-HZ-8315     TCGA-HZ-8317 
"MED9 WILD-TYPE"   "MED9 MUTATED" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-HZ-8636     TCGA-HZ-8638     TCGA-HZ-A49G     TCGA-HZ-A49H 
  "MED9 MUTATED" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-IB-7644     TCGA-IB-7645 
"MED9 WILD-TYPE" "MED9 WILD-TYPE"   "MED9 MUTATED" "MED9 WILD-TYPE" 
    TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7651 
"MED9 WILD-TYPE"   "MED9 MUTATED" "MED9 WILD-TYPE"   "MED9 MUTATED" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-IB-7888     TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891 
  "MED9 MUTATED"   "MED9 MUTATED"   "MED9 MUTATED" "MED9 WILD-TYPE" 
    TCGA-IB-7893     TCGA-IB-7897     TCGA-IB-8126     TCGA-IB-8127 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-IB-A5ST     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE"   "MED9 MUTATED" 
    TCGA-PZ-A5RE     TCGA-Q3-A5QY     TCGA-US-A779     TCGA-US-A77E 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-US-A77J 
"MED9 WILD-TYPE" 
    TCGA-F2-6879     TCGA-F2-6880     TCGA-F2-7273     TCGA-F2-7276 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-F2-A44G     TCGA-F2-A44H     TCGA-FB-A4P5     TCGA-FB-A4P6 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE"   "MED9 MUTATED" 
    TCGA-FB-A545     TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-FB-A7DR 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-FZ-5920     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-H6-8124 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE"   "MED9 MUTATED" 
    TCGA-H6-A45N     TCGA-H8-A6C1     TCGA-HZ-7289     TCGA-HZ-7918 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-HZ-7919     TCGA-HZ-7922     TCGA-HZ-7923     TCGA-HZ-7924 
  "MED9 MUTATED"   "MED9 MUTATED"   "MED9 MUTATED" "MED9 WILD-TYPE" 
    TCGA-HZ-7925     TCGA-HZ-7926     TCGA-HZ-8001     TCGA-HZ-8002 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-HZ-8003     TCGA-HZ-8005     TCGA-HZ-8315     TCGA-HZ-8317 
"MED9 WILD-TYPE"   "MED9 MUTATED" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-HZ-8636     TCGA-HZ-8638     TCGA-HZ-A49G     TCGA-HZ-A49H 
  "MED9 MUTATED" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-IB-7644     TCGA-IB-7645 
"MED9 WILD-TYPE" "MED9 WILD-TYPE"   "MED9 MUTATED" "MED9 WILD-TYPE" 
    TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7651 
"MED9 WILD-TYPE"   "MED9 MUTATED" "MED9 WILD-TYPE"   "MED9 MUTATED" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-IB-7888     TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891 
  "MED9 MUTATED"   "MED9 MUTATED"   "MED9 MUTATED" "MED9 WILD-TYPE" 
    TCGA-IB-7893     TCGA-IB-7897     TCGA-IB-8126     TCGA-IB-8127 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-IB-A5ST     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE"   "MED9 MUTATED" 
    TCGA-PZ-A5RE     TCGA-Q3-A5QY     TCGA-US-A779     TCGA-US-A77E 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-US-A77J 
"MED9 WILD-TYPE" 
[1] "hr=" "1.2"
D114V2, continuous
                vv
clus             STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  MED9 MUTATED          0        1         3         9         0        2
  MED9 WILD-TYPE        1        3         8        42         2        1
D114V3, multiclass
                vv
clus             T1+T2 T3+T4
  MED9 MUTATED       1    14
  MED9 WILD-TYPE     5    52
D114V4, multiclass
       clus
vv      MED9 MUTATED MED9 WILD-TYPE
  T1+T2            1              5
  T3+T4           14             52
D114V5, binary
                cls
clus              0  1
  MED9 MUTATED    5 10
  MED9 WILD-TYPE 12 44
[1] "tbl2"
                cls
clus             [,1] [,2]
  MED9 MUTATED      5   10
  MED9 WILD-TYPE   12   44
   clus
vv  MED9 MUTATED MED9 WILD-TYPE
  0            5             12
  1           10             44
                vv
clus             M0 M1 MX
  MED9 MUTATED    8  2  5
  MED9 WILD-TYPE 31  1 25
D114V6, multiclass
    clus
vv   MED9 MUTATED MED9 WILD-TYPE
  M0            8             31
  M1            2              1
  MX            5             25
D114V7, binary
                cls
clus              0  1
  MED9 MUTATED   10  5
  MED9 WILD-TYPE 26 31
[1] "tbl2"
                cls
clus             [,1] [,2]
  MED9 MUTATED     10    5
  MED9 WILD-TYPE   26   31
        clus
vv       MED9 MUTATED MED9 WILD-TYPE
  FEMALE           10             26
  MALE              5             31
                vv
clus             PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  MED9 MUTATED                                    15
  MED9 WILD-TYPE                                  50
                vv
clus             PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  MED9 MUTATED                                       0
  MED9 WILD-TYPE                                     4
                vv
clus             PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  MED9 MUTATED                                                  0
  MED9 WILD-TYPE                                                2
D114V8, multiclass
                                                  clus
vv                                                 MED9 MUTATED MED9 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                        15             50
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                       0              4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA            0              2
D114V9, continuous
D114V10, continuous
                vv
clus             R0 R1 RX
  MED9 MUTATED    9  5  0
  MED9 WILD-TYPE 33 19  2
D114V11, multiclass
    clus
vv   MED9 MUTATED MED9 WILD-TYPE
  R0            9             33
  R1            5             19
  RX            0              2
D114V12, continuous

Clustering(115) Variable = ZNF608 MUTATION ANALYSIS
D115V1, survival
                  sevent
clus2               0  1
  ZNF608 MUTATED    7  6
  ZNF608 WILD-TYPE 33 23
  ZNF608 MUTATED ZNF608 WILD-TYPE 
              13               56 
  ZNF608 MUTATED ZNF608 WILD-TYPE 
               6               23 
$`ZNF608 MUTATED`
TCGA-F2-7276 TCGA-H6-A45N TCGA-HZ-7919 TCGA-HZ-8001 TCGA-HZ-8315 TCGA-HZ-A49G 
        7.10         7.66         0.66         0.62         0.92         0.76 
TCGA-IB-7645 TCGA-IB-7651 TCGA-IB-7889 TCGA-IB-7891 TCGA-IB-7897 TCGA-IB-8127 
       49.38        19.82        15.81        16.04        15.98        17.16 
TCGA-Q3-A5QY 
       13.68 

$`ZNF608 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-A44G TCGA-F2-A44H TCGA-FB-A4P5 
       10.98         9.70        11.84         5.03        19.27         0.13 
TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR TCGA-FZ-5920 
       11.93        12.66         2.47         0.03         5.46         2.01 
TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 TCGA-H8-A6C1 TCGA-HZ-7289 TCGA-HZ-7918 
       36.20        20.81        12.89        13.02         7.89         0.92 
TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8002 
        0.13         0.26        12.13        11.87         0.26         0.79 
TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8317 TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49H 
        0.69         3.95         0.53         0.16         2.99         0.95 
TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 
        6.38         1.51        11.41         4.77        21.90        15.35 
TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7890 
       15.65        27.98         4.04         3.62        43.79        19.66 
TCGA-IB-7893 TCGA-IB-8126 TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS 
        3.85         0.56        10.82         9.86         7.20        15.12 
TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W TCGA-PZ-A5RE TCGA-US-A779 
        0.26         1.35         4.18         3.62         8.12        16.80 
TCGA-US-A77E TCGA-US-A77J 
       14.14        18.67 

  ZNF608 MUTATED ZNF608 WILD-TYPE 
            0.62             0.03 
  ZNF608 MUTATED ZNF608 WILD-TYPE 
           49.38            43.79 
  ZNF608 MUTATED ZNF608 WILD-TYPE 
           13.68             6.79 
[1] "0.6 - 49.4 (13.7)" "0.0 - 43.8 (6.8)" 
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
"ZNF608 WILD-TYPE" "ZNF608 WILD-TYPE" "ZNF608 WILD-TYPE"   "ZNF608 MUTATED" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"ZNF608 WILD-TYPE" "ZNF608 WILD-TYPE" "ZNF608 WILD-TYPE" "ZNF608 WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
"ZNF608 WILD-TYPE" "ZNF608 WILD-TYPE" "ZNF608 WILD-TYPE" "ZNF608 WILD-TYPE" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"ZNF608 WILD-TYPE" "ZNF608 WILD-TYPE" "ZNF608 WILD-TYPE" "ZNF608 WILD-TYPE" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
  "ZNF608 MUTATED" "ZNF608 WILD-TYPE" "ZNF608 WILD-TYPE" "ZNF608 WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
  "ZNF608 MUTATED" "ZNF608 WILD-TYPE" "ZNF608 WILD-TYPE" "ZNF608 WILD-TYPE" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"ZNF608 WILD-TYPE" "ZNF608 WILD-TYPE"   "ZNF608 MUTATED" "ZNF608 WILD-TYPE" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
"ZNF608 WILD-TYPE" "ZNF608 WILD-TYPE"   "ZNF608 MUTATED" "ZNF608 WILD-TYPE" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
"ZNF608 WILD-TYPE" "ZNF608 WILD-TYPE"   "ZNF608 MUTATED" "ZNF608 WILD-TYPE" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
"ZNF608 WILD-TYPE" "ZNF608 WILD-TYPE" "ZNF608 WILD-TYPE"   "ZNF608 MUTATED" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
"ZNF608 WILD-TYPE" "ZNF608 WILD-TYPE" "ZNF608 WILD-TYPE"   "ZNF608 MUTATED" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
"ZNF608 WILD-TYPE" "ZNF608 WILD-TYPE" "ZNF608 WILD-TYPE" "ZNF608 WILD-TYPE" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
"ZNF608 WILD-TYPE"   "ZNF608 MUTATED" "ZNF608 WILD-TYPE"   "ZNF608 MUTATED" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
"ZNF608 WILD-TYPE"   "ZNF608 MUTATED" "ZNF608 WILD-TYPE"   "ZNF608 MUTATED" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"ZNF608 WILD-TYPE" "ZNF608 WILD-TYPE" "ZNF608 WILD-TYPE" "ZNF608 WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"ZNF608 WILD-TYPE" "ZNF608 WILD-TYPE" "ZNF608 WILD-TYPE" "ZNF608 WILD-TYPE" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
"ZNF608 WILD-TYPE"   "ZNF608 MUTATED" "ZNF608 WILD-TYPE" "ZNF608 WILD-TYPE" 
      TCGA-US-A77J 
"ZNF608 WILD-TYPE" 
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
"ZNF608 WILD-TYPE" "ZNF608 WILD-TYPE" "ZNF608 WILD-TYPE"   "ZNF608 MUTATED" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"ZNF608 WILD-TYPE" "ZNF608 WILD-TYPE" "ZNF608 WILD-TYPE" "ZNF608 WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
"ZNF608 WILD-TYPE" "ZNF608 WILD-TYPE" "ZNF608 WILD-TYPE" "ZNF608 WILD-TYPE" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"ZNF608 WILD-TYPE" "ZNF608 WILD-TYPE" "ZNF608 WILD-TYPE" "ZNF608 WILD-TYPE" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
  "ZNF608 MUTATED" "ZNF608 WILD-TYPE" "ZNF608 WILD-TYPE" "ZNF608 WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
  "ZNF608 MUTATED" "ZNF608 WILD-TYPE" "ZNF608 WILD-TYPE" "ZNF608 WILD-TYPE" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"ZNF608 WILD-TYPE" "ZNF608 WILD-TYPE"   "ZNF608 MUTATED" "ZNF608 WILD-TYPE" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
"ZNF608 WILD-TYPE" "ZNF608 WILD-TYPE"   "ZNF608 MUTATED" "ZNF608 WILD-TYPE" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
"ZNF608 WILD-TYPE" "ZNF608 WILD-TYPE"   "ZNF608 MUTATED" "ZNF608 WILD-TYPE" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
"ZNF608 WILD-TYPE" "ZNF608 WILD-TYPE" "ZNF608 WILD-TYPE"   "ZNF608 MUTATED" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
"ZNF608 WILD-TYPE" "ZNF608 WILD-TYPE" "ZNF608 WILD-TYPE"   "ZNF608 MUTATED" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
"ZNF608 WILD-TYPE" "ZNF608 WILD-TYPE" "ZNF608 WILD-TYPE" "ZNF608 WILD-TYPE" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
"ZNF608 WILD-TYPE"   "ZNF608 MUTATED" "ZNF608 WILD-TYPE"   "ZNF608 MUTATED" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
"ZNF608 WILD-TYPE"   "ZNF608 MUTATED" "ZNF608 WILD-TYPE"   "ZNF608 MUTATED" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"ZNF608 WILD-TYPE" "ZNF608 WILD-TYPE" "ZNF608 WILD-TYPE" "ZNF608 WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"ZNF608 WILD-TYPE" "ZNF608 WILD-TYPE" "ZNF608 WILD-TYPE" "ZNF608 WILD-TYPE" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
"ZNF608 WILD-TYPE"   "ZNF608 MUTATED" "ZNF608 WILD-TYPE" "ZNF608 WILD-TYPE" 
      TCGA-US-A77J 
"ZNF608 WILD-TYPE" 
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
"ZNF608 WILD-TYPE" "ZNF608 WILD-TYPE" "ZNF608 WILD-TYPE"   "ZNF608 MUTATED" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"ZNF608 WILD-TYPE" "ZNF608 WILD-TYPE" "ZNF608 WILD-TYPE" "ZNF608 WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
"ZNF608 WILD-TYPE" "ZNF608 WILD-TYPE" "ZNF608 WILD-TYPE" "ZNF608 WILD-TYPE" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"ZNF608 WILD-TYPE" "ZNF608 WILD-TYPE" "ZNF608 WILD-TYPE" "ZNF608 WILD-TYPE" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
  "ZNF608 MUTATED" "ZNF608 WILD-TYPE" "ZNF608 WILD-TYPE" "ZNF608 WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
  "ZNF608 MUTATED" "ZNF608 WILD-TYPE" "ZNF608 WILD-TYPE" "ZNF608 WILD-TYPE" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"ZNF608 WILD-TYPE" "ZNF608 WILD-TYPE"   "ZNF608 MUTATED" "ZNF608 WILD-TYPE" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
"ZNF608 WILD-TYPE" "ZNF608 WILD-TYPE"   "ZNF608 MUTATED" "ZNF608 WILD-TYPE" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
"ZNF608 WILD-TYPE" "ZNF608 WILD-TYPE"   "ZNF608 MUTATED" "ZNF608 WILD-TYPE" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
"ZNF608 WILD-TYPE" "ZNF608 WILD-TYPE" "ZNF608 WILD-TYPE"   "ZNF608 MUTATED" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
"ZNF608 WILD-TYPE" "ZNF608 WILD-TYPE" "ZNF608 WILD-TYPE"   "ZNF608 MUTATED" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
"ZNF608 WILD-TYPE" "ZNF608 WILD-TYPE" "ZNF608 WILD-TYPE" "ZNF608 WILD-TYPE" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
"ZNF608 WILD-TYPE"   "ZNF608 MUTATED" "ZNF608 WILD-TYPE"   "ZNF608 MUTATED" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
"ZNF608 WILD-TYPE"   "ZNF608 MUTATED" "ZNF608 WILD-TYPE"   "ZNF608 MUTATED" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"ZNF608 WILD-TYPE" "ZNF608 WILD-TYPE" "ZNF608 WILD-TYPE" "ZNF608 WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"ZNF608 WILD-TYPE" "ZNF608 WILD-TYPE" "ZNF608 WILD-TYPE" "ZNF608 WILD-TYPE" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
"ZNF608 WILD-TYPE"   "ZNF608 MUTATED" "ZNF608 WILD-TYPE" "ZNF608 WILD-TYPE" 
      TCGA-US-A77J 
"ZNF608 WILD-TYPE" 
[1] "hr=" "1.6"
D115V2, continuous
                  vv
clus               STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  ZNF608 MUTATED          0        0         1        11         1        0
  ZNF608 WILD-TYPE        1        4        10        40         1        3
D115V3, multiclass
                  vv
clus               T1+T2 T3+T4
  ZNF608 MUTATED       1    12
  ZNF608 WILD-TYPE     5    54
D115V4, multiclass
       clus
vv      ZNF608 MUTATED ZNF608 WILD-TYPE
  T1+T2              1                5
  T3+T4             12               54
D115V5, binary
                  cls
clus                0  1
  ZNF608 MUTATED    2 11
  ZNF608 WILD-TYPE 15 43
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ZNF608 MUTATED      2   11
  ZNF608 WILD-TYPE   15   43
   clus
vv  ZNF608 MUTATED ZNF608 WILD-TYPE
  0              2               15
  1             11               43
                  vv
clus               M0 M1 MX
  ZNF608 MUTATED    8  0  5
  ZNF608 WILD-TYPE 31  3 25
D115V6, multiclass
    clus
vv   ZNF608 MUTATED ZNF608 WILD-TYPE
  M0              8               31
  M1              0                3
  MX              5               25
D115V7, binary
                  cls
clus                0  1
  ZNF608 MUTATED    8  5
  ZNF608 WILD-TYPE 28 31
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ZNF608 MUTATED      8    5
  ZNF608 WILD-TYPE   28   31
        clus
vv       ZNF608 MUTATED ZNF608 WILD-TYPE
  FEMALE              8               28
  MALE                5               31
                  vv
clus               PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  ZNF608 MUTATED                                    12
  ZNF608 WILD-TYPE                                  53
                  vv
clus               PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  ZNF608 MUTATED                                       1
  ZNF608 WILD-TYPE                                     3
                  vv
clus               PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  ZNF608 MUTATED                                                  0
  ZNF608 WILD-TYPE                                                2
D115V8, multiclass
                                                  clus
vv                                                 ZNF608 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                          12
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                         1
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA              0
                                                  clus
vv                                                 ZNF608 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                            53
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                           3
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                2
D115V9, continuous
D115V10, continuous
                  vv
clus               R0 R1 RX
  ZNF608 MUTATED    8  4  0
  ZNF608 WILD-TYPE 34 20  2
D115V11, multiclass
    clus
vv   ZNF608 MUTATED ZNF608 WILD-TYPE
  R0              8               34
  R1              4               20
  RX              0                2
D115V12, continuous

Clustering(116) Variable = DPAGT1 MUTATION ANALYSIS
D116V1, survival
                  sevent
clus2               0  1
  DPAGT1 MUTATED    3  1
  DPAGT1 WILD-TYPE 37 28
  DPAGT1 MUTATED DPAGT1 WILD-TYPE 
               4               65 
  DPAGT1 MUTATED DPAGT1 WILD-TYPE 
               1               28 
$`DPAGT1 MUTATED`
TCGA-HZ-8002 TCGA-HZ-8005 TCGA-HZ-8317 TCGA-OE-A75W 
        0.79         3.95         0.53         3.62 

$`DPAGT1 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P5 TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR 
        0.13        11.93        12.66         2.47         0.03         5.46 
TCGA-FZ-5920 TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 
        2.01        36.20        20.81        12.89         7.66        13.02 
TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 
        7.89         0.92         0.66         0.13         0.26        12.13 
TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8003 TCGA-HZ-8315 TCGA-HZ-8636 
       11.87         0.26         0.62         0.69         0.92         0.16 
TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 
        2.99         0.76         0.95         6.38         1.51        11.41 
TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7651 TCGA-IB-7652 
       49.38         4.77        21.90        15.35        19.82        15.65 
TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 
       27.98         4.04         3.62        43.79        15.81        19.66 
TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO 
       16.04         3.85        15.98         0.56        17.16        10.82 
TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX 
        9.86         7.20        15.12         0.26         1.35         4.18 
TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
        8.12        13.68        16.80        14.14        18.67 

  DPAGT1 MUTATED DPAGT1 WILD-TYPE 
            0.53             0.03 
  DPAGT1 MUTATED DPAGT1 WILD-TYPE 
            3.95            49.38 
  DPAGT1 MUTATED DPAGT1 WILD-TYPE 
           2.205            8.120 
[1] "0.5 - 4.0 (2.2)"  "0.0 - 49.4 (8.1)"
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
"DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
"DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
"DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
"DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE"   "DPAGT1 MUTATED" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
"DPAGT1 WILD-TYPE"   "DPAGT1 MUTATED" "DPAGT1 WILD-TYPE"   "DPAGT1 MUTATED" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
"DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
"DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
"DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
"DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
"DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
"DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE"   "DPAGT1 MUTATED" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
"DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" 
      TCGA-US-A77J 
"DPAGT1 WILD-TYPE" 
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
"DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
"DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
"DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
"DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE"   "DPAGT1 MUTATED" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
"DPAGT1 WILD-TYPE"   "DPAGT1 MUTATED" "DPAGT1 WILD-TYPE"   "DPAGT1 MUTATED" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
"DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
"DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
"DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
"DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
"DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
"DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE"   "DPAGT1 MUTATED" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
"DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" 
      TCGA-US-A77J 
"DPAGT1 WILD-TYPE" 
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
"DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
"DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
"DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
"DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE"   "DPAGT1 MUTATED" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
"DPAGT1 WILD-TYPE"   "DPAGT1 MUTATED" "DPAGT1 WILD-TYPE"   "DPAGT1 MUTATED" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
"DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
"DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
"DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
"DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
"DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
"DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE"   "DPAGT1 MUTATED" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
"DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" 
      TCGA-US-A77J 
"DPAGT1 WILD-TYPE" 
[1] "hr=" "5.2"
D116V2, continuous
                  vv
clus               STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  DPAGT1 MUTATED          0        0         1         3         0        0
  DPAGT1 WILD-TYPE        1        4        10        48         2        3
D116V3, multiclass
                  vv
clus               T1+T2 T3+T4
  DPAGT1 MUTATED       0     4
  DPAGT1 WILD-TYPE     6    62
D116V4, multiclass
       clus
vv      DPAGT1 MUTATED DPAGT1 WILD-TYPE
  T1+T2              0                6
  T3+T4              4               62
D116V5, binary
                  cls
clus                0  1
  DPAGT1 MUTATED    1  3
  DPAGT1 WILD-TYPE 16 51
[1] "tbl2"
                  cls
clus               [,1] [,2]
  DPAGT1 MUTATED      1    3
  DPAGT1 WILD-TYPE   16   51
   clus
vv  DPAGT1 MUTATED DPAGT1 WILD-TYPE
  0              1               16
  1              3               51
                  vv
clus               M0 M1 MX
  DPAGT1 MUTATED    1  0  3
  DPAGT1 WILD-TYPE 38  3 27
D116V6, multiclass
    clus
vv   DPAGT1 MUTATED DPAGT1 WILD-TYPE
  M0              1               38
  M1              0                3
  MX              3               27
D116V7, binary
                  cls
clus                0  1
  DPAGT1 MUTATED    1  3
  DPAGT1 WILD-TYPE 35 33
[1] "tbl2"
                  cls
clus               [,1] [,2]
  DPAGT1 MUTATED      1    3
  DPAGT1 WILD-TYPE   35   33
        clus
vv       DPAGT1 MUTATED DPAGT1 WILD-TYPE
  FEMALE              1               35
  MALE                3               33
                  vv
clus               PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  DPAGT1 MUTATED                                     4
  DPAGT1 WILD-TYPE                                  61
                  vv
clus               PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  DPAGT1 MUTATED                                       0
  DPAGT1 WILD-TYPE                                     4
                  vv
clus               PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  DPAGT1 MUTATED                                                  0
  DPAGT1 WILD-TYPE                                                2
D116V8, multiclass
                                                  clus
vv                                                 DPAGT1 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                           4
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                         0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA              0
                                                  clus
vv                                                 DPAGT1 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                            61
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                           4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                2
D116V9, continuous
[1] "Remove cluster labels:" "DPAGT1 MUTATED"        
clus
  DPAGT1 MUTATED DPAGT1 WILD-TYPE 
               1               21 
      TCGA-F2-6880       TCGA-FB-A4P5       TCGA-FB-A4P6       TCGA-FB-A5VM 
"DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" 
      TCGA-FB-A78T       TCGA-FB-A7DR       TCGA-H6-8124       TCGA-H6-A45N 
"DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" 
      TCGA-H8-A6C1       TCGA-IB-7644       TCGA-IB-7649       TCGA-IB-7651 
"DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" 
      TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887       TCGA-IB-7891 
"DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" 
      TCGA-IB-8126       TCGA-IB-8127       TCGA-IB-A5SS       TCGA-IB-A6UG 
"DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" 
      TCGA-LB-A7SX 
"DPAGT1 WILD-TYPE" 
D116V10, continuous
[1] "Remove cluster labels:" "DPAGT1 MUTATED"        
clus
  DPAGT1 MUTATED DPAGT1 WILD-TYPE 
               1               18 
      TCGA-FB-A4P5       TCGA-FB-A4P6       TCGA-FB-A5VM       TCGA-FB-A78T 
"DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" 
      TCGA-FB-A7DR       TCGA-H6-8124       TCGA-H8-A6C1       TCGA-IB-7644 
"DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" 
      TCGA-IB-7649       TCGA-IB-7651       TCGA-IB-7885       TCGA-IB-7886 
"DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" 
      TCGA-IB-7891       TCGA-IB-8126       TCGA-IB-8127       TCGA-IB-A5SS 
"DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" 
      TCGA-IB-A6UG       TCGA-LB-A7SX 
"DPAGT1 WILD-TYPE" "DPAGT1 WILD-TYPE" 
                  vv
clus               R0 R1 RX
  DPAGT1 MUTATED    2  2  0
  DPAGT1 WILD-TYPE 40 22  2
D116V11, multiclass
    clus
vv   DPAGT1 MUTATED DPAGT1 WILD-TYPE
  R0              2               40
  R1              2               22
  RX              0                2
D116V12, continuous

Clustering(117) Variable = IFNGR2 MUTATION ANALYSIS
D117V1, survival
                  sevent
clus2               0  1
  IFNGR2 MUTATED    4  3
  IFNGR2 WILD-TYPE 36 26
  IFNGR2 MUTATED IFNGR2 WILD-TYPE 
               7               62 
  IFNGR2 MUTATED IFNGR2 WILD-TYPE 
               3               26 
$`IFNGR2 MUTATED`
TCGA-F2-7276 TCGA-FB-A545 TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7926 TCGA-IB-7645 
        7.10        12.66         7.66        13.02         0.26        49.38 
TCGA-OE-A75W 
        3.62 

$`IFNGR2 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-A44G TCGA-F2-A44H TCGA-FB-A4P5 
       10.98         9.70        11.84         5.03        19.27         0.13 
TCGA-FB-A4P6 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR TCGA-FZ-5920 TCGA-FZ-5922 
       11.93         2.47         0.03         5.46         2.01        36.20 
TCGA-FZ-5923 TCGA-H6-8124 TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7922 
       20.81        12.89         7.89         0.92         0.66         0.13 
TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 
        0.26        12.13        11.87         0.62         0.79         0.69 
TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G 
        3.95         0.92         0.53         0.16         2.99         0.76 
TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7646 TCGA-IB-7647 
        0.95         6.38         1.51        11.41         4.77        21.90 
TCGA-IB-7649 TCGA-IB-7651 TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 
       15.35        19.82        15.65        27.98         4.04         3.62 
TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-7897 
       43.79        15.81        19.66        16.04         3.85        15.98 
TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS 
        0.56        17.16        10.82         9.86         7.20        15.12 
TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 
        0.26         1.35         4.18         8.12        13.68        16.80 
TCGA-US-A77E TCGA-US-A77J 
       14.14        18.67 

  IFNGR2 MUTATED IFNGR2 WILD-TYPE 
            0.26             0.03 
  IFNGR2 MUTATED IFNGR2 WILD-TYPE 
           49.38            43.79 
  IFNGR2 MUTATED IFNGR2 WILD-TYPE 
           7.660            7.545 
[1] "0.3 - 49.4 (7.7)" "0.0 - 43.8 (7.5)"
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
"IFNGR2 WILD-TYPE" "IFNGR2 WILD-TYPE" "IFNGR2 WILD-TYPE"   "IFNGR2 MUTATED" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"IFNGR2 WILD-TYPE" "IFNGR2 WILD-TYPE" "IFNGR2 WILD-TYPE" "IFNGR2 WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
  "IFNGR2 MUTATED" "IFNGR2 WILD-TYPE" "IFNGR2 WILD-TYPE" "IFNGR2 WILD-TYPE" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"IFNGR2 WILD-TYPE" "IFNGR2 WILD-TYPE" "IFNGR2 WILD-TYPE" "IFNGR2 WILD-TYPE" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
  "IFNGR2 MUTATED"   "IFNGR2 MUTATED" "IFNGR2 WILD-TYPE" "IFNGR2 WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
"IFNGR2 WILD-TYPE" "IFNGR2 WILD-TYPE" "IFNGR2 WILD-TYPE" "IFNGR2 WILD-TYPE" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"IFNGR2 WILD-TYPE"   "IFNGR2 MUTATED" "IFNGR2 WILD-TYPE" "IFNGR2 WILD-TYPE" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
"IFNGR2 WILD-TYPE" "IFNGR2 WILD-TYPE" "IFNGR2 WILD-TYPE" "IFNGR2 WILD-TYPE" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
"IFNGR2 WILD-TYPE" "IFNGR2 WILD-TYPE" "IFNGR2 WILD-TYPE" "IFNGR2 WILD-TYPE" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
"IFNGR2 WILD-TYPE" "IFNGR2 WILD-TYPE" "IFNGR2 WILD-TYPE"   "IFNGR2 MUTATED" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
"IFNGR2 WILD-TYPE" "IFNGR2 WILD-TYPE" "IFNGR2 WILD-TYPE" "IFNGR2 WILD-TYPE" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
"IFNGR2 WILD-TYPE" "IFNGR2 WILD-TYPE" "IFNGR2 WILD-TYPE" "IFNGR2 WILD-TYPE" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
"IFNGR2 WILD-TYPE" "IFNGR2 WILD-TYPE" "IFNGR2 WILD-TYPE" "IFNGR2 WILD-TYPE" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
"IFNGR2 WILD-TYPE" "IFNGR2 WILD-TYPE" "IFNGR2 WILD-TYPE" "IFNGR2 WILD-TYPE" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"IFNGR2 WILD-TYPE" "IFNGR2 WILD-TYPE" "IFNGR2 WILD-TYPE" "IFNGR2 WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"IFNGR2 WILD-TYPE" "IFNGR2 WILD-TYPE" "IFNGR2 WILD-TYPE"   "IFNGR2 MUTATED" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
"IFNGR2 WILD-TYPE" "IFNGR2 WILD-TYPE" "IFNGR2 WILD-TYPE" "IFNGR2 WILD-TYPE" 
      TCGA-US-A77J 
"IFNGR2 WILD-TYPE" 
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
"IFNGR2 WILD-TYPE" "IFNGR2 WILD-TYPE" "IFNGR2 WILD-TYPE"   "IFNGR2 MUTATED" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"IFNGR2 WILD-TYPE" "IFNGR2 WILD-TYPE" "IFNGR2 WILD-TYPE" "IFNGR2 WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
  "IFNGR2 MUTATED" "IFNGR2 WILD-TYPE" "IFNGR2 WILD-TYPE" "IFNGR2 WILD-TYPE" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"IFNGR2 WILD-TYPE" "IFNGR2 WILD-TYPE" "IFNGR2 WILD-TYPE" "IFNGR2 WILD-TYPE" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
  "IFNGR2 MUTATED"   "IFNGR2 MUTATED" "IFNGR2 WILD-TYPE" "IFNGR2 WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
"IFNGR2 WILD-TYPE" "IFNGR2 WILD-TYPE" "IFNGR2 WILD-TYPE" "IFNGR2 WILD-TYPE" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"IFNGR2 WILD-TYPE"   "IFNGR2 MUTATED" "IFNGR2 WILD-TYPE" "IFNGR2 WILD-TYPE" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
"IFNGR2 WILD-TYPE" "IFNGR2 WILD-TYPE" "IFNGR2 WILD-TYPE" "IFNGR2 WILD-TYPE" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
"IFNGR2 WILD-TYPE" "IFNGR2 WILD-TYPE" "IFNGR2 WILD-TYPE" "IFNGR2 WILD-TYPE" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
"IFNGR2 WILD-TYPE" "IFNGR2 WILD-TYPE" "IFNGR2 WILD-TYPE"   "IFNGR2 MUTATED" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
"IFNGR2 WILD-TYPE" "IFNGR2 WILD-TYPE" "IFNGR2 WILD-TYPE" "IFNGR2 WILD-TYPE" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
"IFNGR2 WILD-TYPE" "IFNGR2 WILD-TYPE" "IFNGR2 WILD-TYPE" "IFNGR2 WILD-TYPE" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
"IFNGR2 WILD-TYPE" "IFNGR2 WILD-TYPE" "IFNGR2 WILD-TYPE" "IFNGR2 WILD-TYPE" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
"IFNGR2 WILD-TYPE" "IFNGR2 WILD-TYPE" "IFNGR2 WILD-TYPE" "IFNGR2 WILD-TYPE" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"IFNGR2 WILD-TYPE" "IFNGR2 WILD-TYPE" "IFNGR2 WILD-TYPE" "IFNGR2 WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"IFNGR2 WILD-TYPE" "IFNGR2 WILD-TYPE" "IFNGR2 WILD-TYPE"   "IFNGR2 MUTATED" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
"IFNGR2 WILD-TYPE" "IFNGR2 WILD-TYPE" "IFNGR2 WILD-TYPE" "IFNGR2 WILD-TYPE" 
      TCGA-US-A77J 
"IFNGR2 WILD-TYPE" 
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
"IFNGR2 WILD-TYPE" "IFNGR2 WILD-TYPE" "IFNGR2 WILD-TYPE"   "IFNGR2 MUTATED" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"IFNGR2 WILD-TYPE" "IFNGR2 WILD-TYPE" "IFNGR2 WILD-TYPE" "IFNGR2 WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
  "IFNGR2 MUTATED" "IFNGR2 WILD-TYPE" "IFNGR2 WILD-TYPE" "IFNGR2 WILD-TYPE" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"IFNGR2 WILD-TYPE" "IFNGR2 WILD-TYPE" "IFNGR2 WILD-TYPE" "IFNGR2 WILD-TYPE" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
  "IFNGR2 MUTATED"   "IFNGR2 MUTATED" "IFNGR2 WILD-TYPE" "IFNGR2 WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
"IFNGR2 WILD-TYPE" "IFNGR2 WILD-TYPE" "IFNGR2 WILD-TYPE" "IFNGR2 WILD-TYPE" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"IFNGR2 WILD-TYPE"   "IFNGR2 MUTATED" "IFNGR2 WILD-TYPE" "IFNGR2 WILD-TYPE" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
"IFNGR2 WILD-TYPE" "IFNGR2 WILD-TYPE" "IFNGR2 WILD-TYPE" "IFNGR2 WILD-TYPE" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
"IFNGR2 WILD-TYPE" "IFNGR2 WILD-TYPE" "IFNGR2 WILD-TYPE" "IFNGR2 WILD-TYPE" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
"IFNGR2 WILD-TYPE" "IFNGR2 WILD-TYPE" "IFNGR2 WILD-TYPE"   "IFNGR2 MUTATED" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
"IFNGR2 WILD-TYPE" "IFNGR2 WILD-TYPE" "IFNGR2 WILD-TYPE" "IFNGR2 WILD-TYPE" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
"IFNGR2 WILD-TYPE" "IFNGR2 WILD-TYPE" "IFNGR2 WILD-TYPE" "IFNGR2 WILD-TYPE" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
"IFNGR2 WILD-TYPE" "IFNGR2 WILD-TYPE" "IFNGR2 WILD-TYPE" "IFNGR2 WILD-TYPE" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
"IFNGR2 WILD-TYPE" "IFNGR2 WILD-TYPE" "IFNGR2 WILD-TYPE" "IFNGR2 WILD-TYPE" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"IFNGR2 WILD-TYPE" "IFNGR2 WILD-TYPE" "IFNGR2 WILD-TYPE" "IFNGR2 WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"IFNGR2 WILD-TYPE" "IFNGR2 WILD-TYPE" "IFNGR2 WILD-TYPE"   "IFNGR2 MUTATED" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
"IFNGR2 WILD-TYPE" "IFNGR2 WILD-TYPE" "IFNGR2 WILD-TYPE" "IFNGR2 WILD-TYPE" 
      TCGA-US-A77J 
"IFNGR2 WILD-TYPE" 
[1] "hr=" "2.1"
D117V2, continuous
                  vv
clus               STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  IFNGR2 MUTATED          0        0         2         5         0        0
  IFNGR2 WILD-TYPE        1        4         9        46         2        3
D117V3, multiclass
                  vv
clus               T1+T2 T3+T4
  IFNGR2 MUTATED       0     7
  IFNGR2 WILD-TYPE     6    59
D117V4, multiclass
       clus
vv      IFNGR2 MUTATED IFNGR2 WILD-TYPE
  T1+T2              0                6
  T3+T4              7               59
D117V5, binary
                  cls
clus                0  1
  IFNGR2 MUTATED    2  5
  IFNGR2 WILD-TYPE 15 49
[1] "tbl2"
                  cls
clus               [,1] [,2]
  IFNGR2 MUTATED      2    5
  IFNGR2 WILD-TYPE   15   49
   clus
vv  IFNGR2 MUTATED IFNGR2 WILD-TYPE
  0              2               15
  1              5               49
                  vv
clus               M0 M1 MX
  IFNGR2 MUTATED    4  0  3
  IFNGR2 WILD-TYPE 35  3 27
D117V6, multiclass
    clus
vv   IFNGR2 MUTATED IFNGR2 WILD-TYPE
  M0              4               35
  M1              0                3
  MX              3               27
D117V7, binary
                  cls
clus                0  1
  IFNGR2 MUTATED    3  4
  IFNGR2 WILD-TYPE 33 32
[1] "tbl2"
                  cls
clus               [,1] [,2]
  IFNGR2 MUTATED      3    4
  IFNGR2 WILD-TYPE   33   32
        clus
vv       IFNGR2 MUTATED IFNGR2 WILD-TYPE
  FEMALE              3               33
  MALE                4               32
                  vv
clus               PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  IFNGR2 MUTATED                                     5
  IFNGR2 WILD-TYPE                                  60
                  vv
clus               PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  IFNGR2 MUTATED                                       2
  IFNGR2 WILD-TYPE                                     2
                  vv
clus               PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  IFNGR2 MUTATED                                                  0
  IFNGR2 WILD-TYPE                                                2
D117V8, multiclass
                                                  clus
vv                                                 IFNGR2 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                           5
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                         2
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA              0
                                                  clus
vv                                                 IFNGR2 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                            60
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                           2
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                2
D117V9, continuous
D117V10, continuous
[1] "Remove cluster labels:" "IFNGR2 MUTATED"        
clus
  IFNGR2 MUTATED IFNGR2 WILD-TYPE 
               2               17 
      TCGA-FB-A4P5       TCGA-FB-A4P6       TCGA-FB-A5VM       TCGA-FB-A78T 
"IFNGR2 WILD-TYPE" "IFNGR2 WILD-TYPE" "IFNGR2 WILD-TYPE" "IFNGR2 WILD-TYPE" 
      TCGA-FB-A7DR       TCGA-H6-8124       TCGA-IB-7644       TCGA-IB-7649 
"IFNGR2 WILD-TYPE" "IFNGR2 WILD-TYPE" "IFNGR2 WILD-TYPE" "IFNGR2 WILD-TYPE" 
      TCGA-IB-7651       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7891 
"IFNGR2 WILD-TYPE" "IFNGR2 WILD-TYPE" "IFNGR2 WILD-TYPE" "IFNGR2 WILD-TYPE" 
      TCGA-IB-8126       TCGA-IB-8127       TCGA-IB-A5SS       TCGA-IB-A6UG 
"IFNGR2 WILD-TYPE" "IFNGR2 WILD-TYPE" "IFNGR2 WILD-TYPE" "IFNGR2 WILD-TYPE" 
      TCGA-LB-A7SX 
"IFNGR2 WILD-TYPE" 
                  vv
clus               R0 R1 RX
  IFNGR2 MUTATED    4  0  1
  IFNGR2 WILD-TYPE 38 24  1
D117V11, multiclass
    clus
vv   IFNGR2 MUTATED IFNGR2 WILD-TYPE
  R0              4               38
  R1              0               24
  RX              1                1
D117V12, continuous

Clustering(118) Variable = PPARGC1B MUTATION ANALYSIS
D118V1, survival
                    sevent
clus2                 0  1
  PPARGC1B MUTATED    9  3
  PPARGC1B WILD-TYPE 31 26
  PPARGC1B MUTATED PPARGC1B WILD-TYPE 
                12                 57 
  PPARGC1B MUTATED PPARGC1B WILD-TYPE 
                 3                 26 
$`PPARGC1B MUTATED`
TCGA-F2-6880 TCGA-FB-A4P6 TCGA-HZ-7918 TCGA-HZ-7924 TCGA-HZ-8001 TCGA-HZ-8003 
        9.70        11.93         0.92        12.13         0.62         0.69 
TCGA-HZ-8317 TCGA-HZ-A4BH TCGA-IB-7647 TCGA-IB-7651 TCGA-IB-7887 TCGA-IB-8127 
        0.53         6.38        21.90        19.82         3.62        17.16 

$`PPARGC1B WILD-TYPE`
TCGA-F2-6879 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H TCGA-FB-A4P5 
       10.98        11.84         7.10         5.03        19.27         0.13 
TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR TCGA-FZ-5920 TCGA-FZ-5922 
       12.66         2.47         0.03         5.46         2.01        36.20 
TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7289 TCGA-HZ-7919 
       20.81        12.89         7.66        13.02         7.89         0.66 
TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8002 TCGA-HZ-8005 
        0.13         0.26        11.87         0.26         0.79         3.95 
TCGA-HZ-8315 TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BK 
        0.92         0.16         2.99         0.76         0.95         1.51 
TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7649 TCGA-IB-7652 TCGA-IB-7885 
       11.41        49.38         4.77        15.35        15.65        27.98 
TCGA-IB-7886 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-7893 
        4.04        43.79        15.81        19.66        16.04         3.85 
TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS 
       15.98         0.56        10.82         9.86         7.20        15.12 
TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W TCGA-PZ-A5RE TCGA-Q3-A5QY 
        0.26         1.35         4.18         3.62         8.12        13.68 
TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
       16.80        14.14        18.67 

  PPARGC1B MUTATED PPARGC1B WILD-TYPE 
              0.53               0.03 
  PPARGC1B MUTATED PPARGC1B WILD-TYPE 
             21.90              49.38 
  PPARGC1B MUTATED PPARGC1B WILD-TYPE 
              8.04               7.66 
[1] "0.5 - 21.9 (8.0)" "0.0 - 49.4 (7.7)"
        TCGA-F2-6879         TCGA-F2-6880         TCGA-F2-7273 
"PPARGC1B WILD-TYPE"   "PPARGC1B MUTATED" "PPARGC1B WILD-TYPE" 
        TCGA-F2-7276         TCGA-F2-A44G         TCGA-F2-A44H 
"PPARGC1B WILD-TYPE" "PPARGC1B WILD-TYPE" "PPARGC1B WILD-TYPE" 
        TCGA-FB-A4P5         TCGA-FB-A4P6         TCGA-FB-A545 
"PPARGC1B WILD-TYPE"   "PPARGC1B MUTATED" "PPARGC1B WILD-TYPE" 
        TCGA-FB-A5VM         TCGA-FB-A78T         TCGA-FB-A7DR 
"PPARGC1B WILD-TYPE" "PPARGC1B WILD-TYPE" "PPARGC1B WILD-TYPE" 
        TCGA-FZ-5920         TCGA-FZ-5922         TCGA-FZ-5923 
"PPARGC1B WILD-TYPE" "PPARGC1B WILD-TYPE" "PPARGC1B WILD-TYPE" 
        TCGA-H6-8124         TCGA-H6-A45N         TCGA-H8-A6C1 
"PPARGC1B WILD-TYPE" "PPARGC1B WILD-TYPE" "PPARGC1B WILD-TYPE" 
        TCGA-HZ-7289         TCGA-HZ-7918         TCGA-HZ-7919 
"PPARGC1B WILD-TYPE"   "PPARGC1B MUTATED" "PPARGC1B WILD-TYPE" 
        TCGA-HZ-7922         TCGA-HZ-7923         TCGA-HZ-7924 
"PPARGC1B WILD-TYPE" "PPARGC1B WILD-TYPE"   "PPARGC1B MUTATED" 
        TCGA-HZ-7925         TCGA-HZ-7926         TCGA-HZ-8001 
"PPARGC1B WILD-TYPE" "PPARGC1B WILD-TYPE"   "PPARGC1B MUTATED" 
        TCGA-HZ-8002         TCGA-HZ-8003         TCGA-HZ-8005 
"PPARGC1B WILD-TYPE"   "PPARGC1B MUTATED" "PPARGC1B WILD-TYPE" 
        TCGA-HZ-8315         TCGA-HZ-8317         TCGA-HZ-8636 
"PPARGC1B WILD-TYPE"   "PPARGC1B MUTATED" "PPARGC1B WILD-TYPE" 
        TCGA-HZ-8638         TCGA-HZ-A49G         TCGA-HZ-A49H 
"PPARGC1B WILD-TYPE" "PPARGC1B WILD-TYPE" "PPARGC1B WILD-TYPE" 
        TCGA-HZ-A4BH         TCGA-HZ-A4BK         TCGA-IB-7644 
  "PPARGC1B MUTATED" "PPARGC1B WILD-TYPE" "PPARGC1B WILD-TYPE" 
        TCGA-IB-7645         TCGA-IB-7646         TCGA-IB-7647 
"PPARGC1B WILD-TYPE" "PPARGC1B WILD-TYPE"   "PPARGC1B MUTATED" 
        TCGA-IB-7649         TCGA-IB-7651         TCGA-IB-7652 
"PPARGC1B WILD-TYPE"   "PPARGC1B MUTATED" "PPARGC1B WILD-TYPE" 
        TCGA-IB-7885         TCGA-IB-7886         TCGA-IB-7887 
"PPARGC1B WILD-TYPE" "PPARGC1B WILD-TYPE"   "PPARGC1B MUTATED" 
        TCGA-IB-7888         TCGA-IB-7889         TCGA-IB-7890 
"PPARGC1B WILD-TYPE" "PPARGC1B WILD-TYPE" "PPARGC1B WILD-TYPE" 
        TCGA-IB-7891         TCGA-IB-7893         TCGA-IB-7897 
"PPARGC1B WILD-TYPE" "PPARGC1B WILD-TYPE" "PPARGC1B WILD-TYPE" 
        TCGA-IB-8126         TCGA-IB-8127         TCGA-IB-A5SO 
"PPARGC1B WILD-TYPE"   "PPARGC1B MUTATED" "PPARGC1B WILD-TYPE" 
        TCGA-IB-A5SP         TCGA-IB-A5SQ         TCGA-IB-A5SS 
"PPARGC1B WILD-TYPE" "PPARGC1B WILD-TYPE" "PPARGC1B WILD-TYPE" 
        TCGA-IB-A5ST         TCGA-IB-A6UG         TCGA-LB-A7SX 
"PPARGC1B WILD-TYPE" "PPARGC1B WILD-TYPE" "PPARGC1B WILD-TYPE" 
        TCGA-OE-A75W         TCGA-PZ-A5RE         TCGA-Q3-A5QY 
"PPARGC1B WILD-TYPE" "PPARGC1B WILD-TYPE" "PPARGC1B WILD-TYPE" 
        TCGA-US-A779         TCGA-US-A77E         TCGA-US-A77J 
"PPARGC1B WILD-TYPE" "PPARGC1B WILD-TYPE" "PPARGC1B WILD-TYPE" 
        TCGA-F2-6879         TCGA-F2-6880         TCGA-F2-7273 
"PPARGC1B WILD-TYPE"   "PPARGC1B MUTATED" "PPARGC1B WILD-TYPE" 
        TCGA-F2-7276         TCGA-F2-A44G         TCGA-F2-A44H 
"PPARGC1B WILD-TYPE" "PPARGC1B WILD-TYPE" "PPARGC1B WILD-TYPE" 
        TCGA-FB-A4P5         TCGA-FB-A4P6         TCGA-FB-A545 
"PPARGC1B WILD-TYPE"   "PPARGC1B MUTATED" "PPARGC1B WILD-TYPE" 
        TCGA-FB-A5VM         TCGA-FB-A78T         TCGA-FB-A7DR 
"PPARGC1B WILD-TYPE" "PPARGC1B WILD-TYPE" "PPARGC1B WILD-TYPE" 
        TCGA-FZ-5920         TCGA-FZ-5922         TCGA-FZ-5923 
"PPARGC1B WILD-TYPE" "PPARGC1B WILD-TYPE" "PPARGC1B WILD-TYPE" 
        TCGA-H6-8124         TCGA-H6-A45N         TCGA-H8-A6C1 
"PPARGC1B WILD-TYPE" "PPARGC1B WILD-TYPE" "PPARGC1B WILD-TYPE" 
        TCGA-HZ-7289         TCGA-HZ-7918         TCGA-HZ-7919 
"PPARGC1B WILD-TYPE"   "PPARGC1B MUTATED" "PPARGC1B WILD-TYPE" 
        TCGA-HZ-7922         TCGA-HZ-7923         TCGA-HZ-7924 
"PPARGC1B WILD-TYPE" "PPARGC1B WILD-TYPE"   "PPARGC1B MUTATED" 
        TCGA-HZ-7925         TCGA-HZ-7926         TCGA-HZ-8001 
"PPARGC1B WILD-TYPE" "PPARGC1B WILD-TYPE"   "PPARGC1B MUTATED" 
        TCGA-HZ-8002         TCGA-HZ-8003         TCGA-HZ-8005 
"PPARGC1B WILD-TYPE"   "PPARGC1B MUTATED" "PPARGC1B WILD-TYPE" 
        TCGA-HZ-8315         TCGA-HZ-8317         TCGA-HZ-8636 
"PPARGC1B WILD-TYPE"   "PPARGC1B MUTATED" "PPARGC1B WILD-TYPE" 
        TCGA-HZ-8638         TCGA-HZ-A49G         TCGA-HZ-A49H 
"PPARGC1B WILD-TYPE" "PPARGC1B WILD-TYPE" "PPARGC1B WILD-TYPE" 
        TCGA-HZ-A4BH         TCGA-HZ-A4BK         TCGA-IB-7644 
  "PPARGC1B MUTATED" "PPARGC1B WILD-TYPE" "PPARGC1B WILD-TYPE" 
        TCGA-IB-7645         TCGA-IB-7646         TCGA-IB-7647 
"PPARGC1B WILD-TYPE" "PPARGC1B WILD-TYPE"   "PPARGC1B MUTATED" 
        TCGA-IB-7649         TCGA-IB-7651         TCGA-IB-7652 
"PPARGC1B WILD-TYPE"   "PPARGC1B MUTATED" "PPARGC1B WILD-TYPE" 
        TCGA-IB-7885         TCGA-IB-7886         TCGA-IB-7887 
"PPARGC1B WILD-TYPE" "PPARGC1B WILD-TYPE"   "PPARGC1B MUTATED" 
        TCGA-IB-7888         TCGA-IB-7889         TCGA-IB-7890 
"PPARGC1B WILD-TYPE" "PPARGC1B WILD-TYPE" "PPARGC1B WILD-TYPE" 
        TCGA-IB-7891         TCGA-IB-7893         TCGA-IB-7897 
"PPARGC1B WILD-TYPE" "PPARGC1B WILD-TYPE" "PPARGC1B WILD-TYPE" 
        TCGA-IB-8126         TCGA-IB-8127         TCGA-IB-A5SO 
"PPARGC1B WILD-TYPE"   "PPARGC1B MUTATED" "PPARGC1B WILD-TYPE" 
        TCGA-IB-A5SP         TCGA-IB-A5SQ         TCGA-IB-A5SS 
"PPARGC1B WILD-TYPE" "PPARGC1B WILD-TYPE" "PPARGC1B WILD-TYPE" 
        TCGA-IB-A5ST         TCGA-IB-A6UG         TCGA-LB-A7SX 
"PPARGC1B WILD-TYPE" "PPARGC1B WILD-TYPE" "PPARGC1B WILD-TYPE" 
        TCGA-OE-A75W         TCGA-PZ-A5RE         TCGA-Q3-A5QY 
"PPARGC1B WILD-TYPE" "PPARGC1B WILD-TYPE" "PPARGC1B WILD-TYPE" 
        TCGA-US-A779         TCGA-US-A77E         TCGA-US-A77J 
"PPARGC1B WILD-TYPE" "PPARGC1B WILD-TYPE" "PPARGC1B WILD-TYPE" 
        TCGA-F2-6879         TCGA-F2-6880         TCGA-F2-7273 
"PPARGC1B WILD-TYPE"   "PPARGC1B MUTATED" "PPARGC1B WILD-TYPE" 
        TCGA-F2-7276         TCGA-F2-A44G         TCGA-F2-A44H 
"PPARGC1B WILD-TYPE" "PPARGC1B WILD-TYPE" "PPARGC1B WILD-TYPE" 
        TCGA-FB-A4P5         TCGA-FB-A4P6         TCGA-FB-A545 
"PPARGC1B WILD-TYPE"   "PPARGC1B MUTATED" "PPARGC1B WILD-TYPE" 
        TCGA-FB-A5VM         TCGA-FB-A78T         TCGA-FB-A7DR 
"PPARGC1B WILD-TYPE" "PPARGC1B WILD-TYPE" "PPARGC1B WILD-TYPE" 
        TCGA-FZ-5920         TCGA-FZ-5922         TCGA-FZ-5923 
"PPARGC1B WILD-TYPE" "PPARGC1B WILD-TYPE" "PPARGC1B WILD-TYPE" 
        TCGA-H6-8124         TCGA-H6-A45N         TCGA-H8-A6C1 
"PPARGC1B WILD-TYPE" "PPARGC1B WILD-TYPE" "PPARGC1B WILD-TYPE" 
        TCGA-HZ-7289         TCGA-HZ-7918         TCGA-HZ-7919 
"PPARGC1B WILD-TYPE"   "PPARGC1B MUTATED" "PPARGC1B WILD-TYPE" 
        TCGA-HZ-7922         TCGA-HZ-7923         TCGA-HZ-7924 
"PPARGC1B WILD-TYPE" "PPARGC1B WILD-TYPE"   "PPARGC1B MUTATED" 
        TCGA-HZ-7925         TCGA-HZ-7926         TCGA-HZ-8001 
"PPARGC1B WILD-TYPE" "PPARGC1B WILD-TYPE"   "PPARGC1B MUTATED" 
        TCGA-HZ-8002         TCGA-HZ-8003         TCGA-HZ-8005 
"PPARGC1B WILD-TYPE"   "PPARGC1B MUTATED" "PPARGC1B WILD-TYPE" 
        TCGA-HZ-8315         TCGA-HZ-8317         TCGA-HZ-8636 
"PPARGC1B WILD-TYPE"   "PPARGC1B MUTATED" "PPARGC1B WILD-TYPE" 
        TCGA-HZ-8638         TCGA-HZ-A49G         TCGA-HZ-A49H 
"PPARGC1B WILD-TYPE" "PPARGC1B WILD-TYPE" "PPARGC1B WILD-TYPE" 
        TCGA-HZ-A4BH         TCGA-HZ-A4BK         TCGA-IB-7644 
  "PPARGC1B MUTATED" "PPARGC1B WILD-TYPE" "PPARGC1B WILD-TYPE" 
        TCGA-IB-7645         TCGA-IB-7646         TCGA-IB-7647 
"PPARGC1B WILD-TYPE" "PPARGC1B WILD-TYPE"   "PPARGC1B MUTATED" 
        TCGA-IB-7649         TCGA-IB-7651         TCGA-IB-7652 
"PPARGC1B WILD-TYPE"   "PPARGC1B MUTATED" "PPARGC1B WILD-TYPE" 
        TCGA-IB-7885         TCGA-IB-7886         TCGA-IB-7887 
"PPARGC1B WILD-TYPE" "PPARGC1B WILD-TYPE"   "PPARGC1B MUTATED" 
        TCGA-IB-7888         TCGA-IB-7889         TCGA-IB-7890 
"PPARGC1B WILD-TYPE" "PPARGC1B WILD-TYPE" "PPARGC1B WILD-TYPE" 
        TCGA-IB-7891         TCGA-IB-7893         TCGA-IB-7897 
"PPARGC1B WILD-TYPE" "PPARGC1B WILD-TYPE" "PPARGC1B WILD-TYPE" 
        TCGA-IB-8126         TCGA-IB-8127         TCGA-IB-A5SO 
"PPARGC1B WILD-TYPE"   "PPARGC1B MUTATED" "PPARGC1B WILD-TYPE" 
        TCGA-IB-A5SP         TCGA-IB-A5SQ         TCGA-IB-A5SS 
"PPARGC1B WILD-TYPE" "PPARGC1B WILD-TYPE" "PPARGC1B WILD-TYPE" 
        TCGA-IB-A5ST         TCGA-IB-A6UG         TCGA-LB-A7SX 
"PPARGC1B WILD-TYPE" "PPARGC1B WILD-TYPE" "PPARGC1B WILD-TYPE" 
        TCGA-OE-A75W         TCGA-PZ-A5RE         TCGA-Q3-A5QY 
"PPARGC1B WILD-TYPE" "PPARGC1B WILD-TYPE" "PPARGC1B WILD-TYPE" 
        TCGA-US-A779         TCGA-US-A77E         TCGA-US-A77J 
"PPARGC1B WILD-TYPE" "PPARGC1B WILD-TYPE" "PPARGC1B WILD-TYPE" 
[1] "hr=" "1.7"
D118V2, continuous
                    vv
clus                 STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  PPARGC1B MUTATED          0        0         1        11         1        0
  PPARGC1B WILD-TYPE        1        4        10        40         1        3
D118V3, multiclass
                    vv
clus                 T1+T2 T3+T4
  PPARGC1B MUTATED       0    13
  PPARGC1B WILD-TYPE     6    53
D118V4, multiclass
       clus
vv      PPARGC1B MUTATED PPARGC1B WILD-TYPE
  T1+T2                0                  6
  T3+T4               13                 53
D118V5, binary
                    cls
clus                  0  1
  PPARGC1B MUTATED    2 11
  PPARGC1B WILD-TYPE 15 43
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  PPARGC1B MUTATED      2   11
  PPARGC1B WILD-TYPE   15   43
   clus
vv  PPARGC1B MUTATED PPARGC1B WILD-TYPE
  0                2                 15
  1               11                 43
                    vv
clus                 M0 M1 MX
  PPARGC1B MUTATED    6  0  7
  PPARGC1B WILD-TYPE 33  3 23
D118V6, multiclass
    clus
vv   PPARGC1B MUTATED PPARGC1B WILD-TYPE
  M0                6                 33
  M1                0                  3
  MX                7                 23
D118V7, binary
                    cls
clus                  0  1
  PPARGC1B MUTATED    7  6
  PPARGC1B WILD-TYPE 29 30
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  PPARGC1B MUTATED      7    6
  PPARGC1B WILD-TYPE   29   30
        clus
vv       PPARGC1B MUTATED PPARGC1B WILD-TYPE
  FEMALE                7                 29
  MALE                  6                 30
                    vv
clus                 PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  PPARGC1B MUTATED                                    13
  PPARGC1B WILD-TYPE                                  52
                    vv
clus                 PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  PPARGC1B MUTATED                                       0
  PPARGC1B WILD-TYPE                                     4
                    vv
clus                 PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  PPARGC1B MUTATED                                                  0
  PPARGC1B WILD-TYPE                                                2
D118V8, multiclass
                                                  clus
vv                                                 PPARGC1B MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                            13
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                           0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                0
                                                  clus
vv                                                 PPARGC1B WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                              52
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                             4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                  2
D118V9, continuous
D118V10, continuous
                    vv
clus                 R0 R1 RX
  PPARGC1B MUTATED    7  5  0
  PPARGC1B WILD-TYPE 35 19  2
D118V11, multiclass
    clus
vv   PPARGC1B MUTATED PPARGC1B WILD-TYPE
  R0                7                 35
  R1                5                 19
  RX                0                  2
D118V12, continuous

Clustering(119) Variable = DHX57 MUTATION ANALYSIS
D119V1, survival
                 sevent
clus2              0  1
  DHX57 MUTATED   11  4
  DHX57 WILD-TYPE 29 25
  DHX57 MUTATED DHX57 WILD-TYPE 
             15              54 
  DHX57 MUTATED DHX57 WILD-TYPE 
              4              25 
$`DHX57 MUTATED`
TCGA-F2-6880 TCGA-F2-A44H TCGA-FB-A4P6 TCGA-FB-A545 TCGA-HZ-7923 TCGA-HZ-8003 
        9.70        19.27        11.93        12.66         0.26         0.69 
TCGA-HZ-8005 TCGA-HZ-8317 TCGA-HZ-8638 TCGA-HZ-A4BH TCGA-IB-7647 TCGA-IB-7649 
        3.95         0.53         2.99         6.38        21.90        15.35 
TCGA-IB-7651 TCGA-IB-8127 TCGA-IB-A5ST 
       19.82        17.16         0.26 

$`DHX57 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-FB-A4P5 TCGA-FB-A5VM 
       10.98        11.84         7.10         5.03         0.13         2.47 
TCGA-FB-A78T TCGA-FB-A7DR TCGA-FZ-5920 TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 
        0.03         5.46         2.01        36.20        20.81        12.89 
TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7922 
        7.66        13.02         7.89         0.92         0.66         0.13 
TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8315 
       12.13        11.87         0.26         0.62         0.79         0.92 
TCGA-HZ-8636 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7645 
        0.16         0.76         0.95         1.51        11.41        49.38 
TCGA-IB-7646 TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7888 
        4.77        15.65        27.98         4.04         3.62        43.79 
TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-8126 
       15.81        19.66        16.04         3.85        15.98         0.56 
TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A6UG TCGA-LB-A7SX 
       10.82         9.86         7.20        15.12         1.35         4.18 
TCGA-OE-A75W TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
        3.62         8.12        13.68        16.80        14.14        18.67 

  DHX57 MUTATED DHX57 WILD-TYPE 
           0.26            0.03 
  DHX57 MUTATED DHX57 WILD-TYPE 
          21.90           49.38 
  DHX57 MUTATED DHX57 WILD-TYPE 
           9.70            7.43 
[1] "0.3 - 21.9 (9.7)" "0.0 - 49.4 (7.4)"
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"DHX57 WILD-TYPE"   "DHX57 MUTATED" "DHX57 WILD-TYPE" "DHX57 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"DHX57 WILD-TYPE"   "DHX57 MUTATED" "DHX57 WILD-TYPE"   "DHX57 MUTATED" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
  "DHX57 MUTATED" "DHX57 WILD-TYPE" "DHX57 WILD-TYPE" "DHX57 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"DHX57 WILD-TYPE" "DHX57 WILD-TYPE" "DHX57 WILD-TYPE" "DHX57 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"DHX57 WILD-TYPE" "DHX57 WILD-TYPE" "DHX57 WILD-TYPE" "DHX57 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"DHX57 WILD-TYPE" "DHX57 WILD-TYPE"   "DHX57 MUTATED" "DHX57 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"DHX57 WILD-TYPE" "DHX57 WILD-TYPE" "DHX57 WILD-TYPE" "DHX57 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
  "DHX57 MUTATED"   "DHX57 MUTATED" "DHX57 WILD-TYPE"   "DHX57 MUTATED" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"DHX57 WILD-TYPE"   "DHX57 MUTATED" "DHX57 WILD-TYPE" "DHX57 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
  "DHX57 MUTATED" "DHX57 WILD-TYPE" "DHX57 WILD-TYPE" "DHX57 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"DHX57 WILD-TYPE"   "DHX57 MUTATED"   "DHX57 MUTATED"   "DHX57 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"DHX57 WILD-TYPE" "DHX57 WILD-TYPE" "DHX57 WILD-TYPE" "DHX57 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"DHX57 WILD-TYPE" "DHX57 WILD-TYPE" "DHX57 WILD-TYPE" "DHX57 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"DHX57 WILD-TYPE" "DHX57 WILD-TYPE" "DHX57 WILD-TYPE"   "DHX57 MUTATED" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"DHX57 WILD-TYPE" "DHX57 WILD-TYPE" "DHX57 WILD-TYPE" "DHX57 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
  "DHX57 MUTATED" "DHX57 WILD-TYPE" "DHX57 WILD-TYPE" "DHX57 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"DHX57 WILD-TYPE" "DHX57 WILD-TYPE" "DHX57 WILD-TYPE" "DHX57 WILD-TYPE" 
     TCGA-US-A77J 
"DHX57 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"DHX57 WILD-TYPE"   "DHX57 MUTATED" "DHX57 WILD-TYPE" "DHX57 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"DHX57 WILD-TYPE"   "DHX57 MUTATED" "DHX57 WILD-TYPE"   "DHX57 MUTATED" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
  "DHX57 MUTATED" "DHX57 WILD-TYPE" "DHX57 WILD-TYPE" "DHX57 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"DHX57 WILD-TYPE" "DHX57 WILD-TYPE" "DHX57 WILD-TYPE" "DHX57 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"DHX57 WILD-TYPE" "DHX57 WILD-TYPE" "DHX57 WILD-TYPE" "DHX57 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"DHX57 WILD-TYPE" "DHX57 WILD-TYPE"   "DHX57 MUTATED" "DHX57 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"DHX57 WILD-TYPE" "DHX57 WILD-TYPE" "DHX57 WILD-TYPE" "DHX57 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
  "DHX57 MUTATED"   "DHX57 MUTATED" "DHX57 WILD-TYPE"   "DHX57 MUTATED" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"DHX57 WILD-TYPE"   "DHX57 MUTATED" "DHX57 WILD-TYPE" "DHX57 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
  "DHX57 MUTATED" "DHX57 WILD-TYPE" "DHX57 WILD-TYPE" "DHX57 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"DHX57 WILD-TYPE"   "DHX57 MUTATED"   "DHX57 MUTATED"   "DHX57 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"DHX57 WILD-TYPE" "DHX57 WILD-TYPE" "DHX57 WILD-TYPE" "DHX57 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"DHX57 WILD-TYPE" "DHX57 WILD-TYPE" "DHX57 WILD-TYPE" "DHX57 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"DHX57 WILD-TYPE" "DHX57 WILD-TYPE" "DHX57 WILD-TYPE"   "DHX57 MUTATED" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"DHX57 WILD-TYPE" "DHX57 WILD-TYPE" "DHX57 WILD-TYPE" "DHX57 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
  "DHX57 MUTATED" "DHX57 WILD-TYPE" "DHX57 WILD-TYPE" "DHX57 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"DHX57 WILD-TYPE" "DHX57 WILD-TYPE" "DHX57 WILD-TYPE" "DHX57 WILD-TYPE" 
     TCGA-US-A77J 
"DHX57 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"DHX57 WILD-TYPE"   "DHX57 MUTATED" "DHX57 WILD-TYPE" "DHX57 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"DHX57 WILD-TYPE"   "DHX57 MUTATED" "DHX57 WILD-TYPE"   "DHX57 MUTATED" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
  "DHX57 MUTATED" "DHX57 WILD-TYPE" "DHX57 WILD-TYPE" "DHX57 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"DHX57 WILD-TYPE" "DHX57 WILD-TYPE" "DHX57 WILD-TYPE" "DHX57 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"DHX57 WILD-TYPE" "DHX57 WILD-TYPE" "DHX57 WILD-TYPE" "DHX57 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"DHX57 WILD-TYPE" "DHX57 WILD-TYPE"   "DHX57 MUTATED" "DHX57 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"DHX57 WILD-TYPE" "DHX57 WILD-TYPE" "DHX57 WILD-TYPE" "DHX57 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
  "DHX57 MUTATED"   "DHX57 MUTATED" "DHX57 WILD-TYPE"   "DHX57 MUTATED" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"DHX57 WILD-TYPE"   "DHX57 MUTATED" "DHX57 WILD-TYPE" "DHX57 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
  "DHX57 MUTATED" "DHX57 WILD-TYPE" "DHX57 WILD-TYPE" "DHX57 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"DHX57 WILD-TYPE"   "DHX57 MUTATED"   "DHX57 MUTATED"   "DHX57 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"DHX57 WILD-TYPE" "DHX57 WILD-TYPE" "DHX57 WILD-TYPE" "DHX57 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"DHX57 WILD-TYPE" "DHX57 WILD-TYPE" "DHX57 WILD-TYPE" "DHX57 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"DHX57 WILD-TYPE" "DHX57 WILD-TYPE" "DHX57 WILD-TYPE"   "DHX57 MUTATED" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"DHX57 WILD-TYPE" "DHX57 WILD-TYPE" "DHX57 WILD-TYPE" "DHX57 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
  "DHX57 MUTATED" "DHX57 WILD-TYPE" "DHX57 WILD-TYPE" "DHX57 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"DHX57 WILD-TYPE" "DHX57 WILD-TYPE" "DHX57 WILD-TYPE" "DHX57 WILD-TYPE" 
     TCGA-US-A77J 
"DHX57 WILD-TYPE" 
[1] "hr=" "1.8"
D119V2, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  DHX57 MUTATED          1        0         2        12         0        0
  DHX57 WILD-TYPE        0        4         9        39         2        3
D119V3, multiclass
                 vv
clus              T1+T2 T3+T4
  DHX57 MUTATED       1    14
  DHX57 WILD-TYPE     5    52
D119V4, multiclass
       clus
vv      DHX57 MUTATED DHX57 WILD-TYPE
  T1+T2             1               5
  T3+T4            14              52
D119V5, binary
                 cls
clus               0  1
  DHX57 MUTATED    3 12
  DHX57 WILD-TYPE 14 42
[1] "tbl2"
                 cls
clus              [,1] [,2]
  DHX57 MUTATED      3   12
  DHX57 WILD-TYPE   14   42
   clus
vv  DHX57 MUTATED DHX57 WILD-TYPE
  0             3              14
  1            12              42
                 vv
clus              M0 M1 MX
  DHX57 MUTATED    8  0  7
  DHX57 WILD-TYPE 31  3 23
D119V6, multiclass
    clus
vv   DHX57 MUTATED DHX57 WILD-TYPE
  M0             8              31
  M1             0               3
  MX             7              23
D119V7, binary
                 cls
clus               0  1
  DHX57 MUTATED    8  7
  DHX57 WILD-TYPE 28 29
[1] "tbl2"
                 cls
clus              [,1] [,2]
  DHX57 MUTATED      8    7
  DHX57 WILD-TYPE   28   29
        clus
vv       DHX57 MUTATED DHX57 WILD-TYPE
  FEMALE             8              28
  MALE               7              29
                 vv
clus              PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  DHX57 MUTATED                                    14
  DHX57 WILD-TYPE                                  51
                 vv
clus              PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  DHX57 MUTATED                                       0
  DHX57 WILD-TYPE                                     4
                 vv
clus              PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  DHX57 MUTATED                                                  1
  DHX57 WILD-TYPE                                                1
D119V8, multiclass
                                                  clus
vv                                                 DHX57 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                         14
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                        0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA             1
                                                  clus
vv                                                 DHX57 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                           51
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                          4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA               1
D119V9, continuous
D119V10, continuous
                 vv
clus              R0 R1 RX
  DHX57 MUTATED    7  6  0
  DHX57 WILD-TYPE 35 18  2
D119V11, multiclass
    clus
vv   DHX57 MUTATED DHX57 WILD-TYPE
  R0             7              35
  R1             6              18
  RX             0               2
D119V12, continuous

Clustering(120) Variable = TDRD6 MUTATION ANALYSIS
D120V1, survival
                 sevent
clus2              0  1
  TDRD6 MUTATED    6  5
  TDRD6 WILD-TYPE 34 24
  TDRD6 MUTATED TDRD6 WILD-TYPE 
             11              58 
  TDRD6 MUTATED TDRD6 WILD-TYPE 
              5              24 
$`TDRD6 MUTATED`
TCGA-F2-7276 TCGA-FB-A4P5 TCGA-FB-A78T TCGA-HZ-7923 TCGA-HZ-A49G TCGA-HZ-A4BH 
        7.10         0.13         0.03         0.26         0.76         6.38 
TCGA-HZ-A4BK TCGA-IB-7646 TCGA-IB-7651 TCGA-IB-7888 TCGA-PZ-A5RE 
        1.51         4.77        19.82        43.79         8.12 

$`TDRD6 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-A44G TCGA-F2-A44H TCGA-FB-A4P6 
       10.98         9.70        11.84         5.03        19.27        11.93 
TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A7DR TCGA-FZ-5920 TCGA-FZ-5922 TCGA-FZ-5923 
       12.66         2.47         5.46         2.01        36.20        20.81 
TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-7919 
       12.89         7.66        13.02         7.89         0.92         0.66 
TCGA-HZ-7922 TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 
        0.13        12.13        11.87         0.26         0.62         0.79 
TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8636 TCGA-HZ-8638 
        0.69         3.95         0.92         0.53         0.16         2.99 
TCGA-HZ-A49H TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7652 
        0.95        11.41        49.38        21.90        15.35        15.65 
TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 
       27.98         4.04         3.62        15.81        19.66        16.04 
TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP 
        3.85        15.98         0.56        17.16        10.82         9.86 
TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W 
        7.20        15.12         0.26         1.35         4.18         3.62 
TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
       13.68        16.80        14.14        18.67 

  TDRD6 MUTATED TDRD6 WILD-TYPE 
           0.03            0.13 
  TDRD6 MUTATED TDRD6 WILD-TYPE 
          43.79           49.38 
  TDRD6 MUTATED TDRD6 WILD-TYPE 
           4.77            9.78 
[1] "0.0 - 43.8 (4.8)" "0.1 - 49.4 (9.8)"
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"TDRD6 WILD-TYPE" "TDRD6 WILD-TYPE" "TDRD6 WILD-TYPE"   "TDRD6 MUTATED" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"TDRD6 WILD-TYPE" "TDRD6 WILD-TYPE"   "TDRD6 MUTATED" "TDRD6 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"TDRD6 WILD-TYPE" "TDRD6 WILD-TYPE"   "TDRD6 MUTATED" "TDRD6 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"TDRD6 WILD-TYPE" "TDRD6 WILD-TYPE" "TDRD6 WILD-TYPE" "TDRD6 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"TDRD6 WILD-TYPE" "TDRD6 WILD-TYPE" "TDRD6 WILD-TYPE" "TDRD6 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"TDRD6 WILD-TYPE" "TDRD6 WILD-TYPE"   "TDRD6 MUTATED" "TDRD6 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"TDRD6 WILD-TYPE" "TDRD6 WILD-TYPE" "TDRD6 WILD-TYPE" "TDRD6 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"TDRD6 WILD-TYPE" "TDRD6 WILD-TYPE" "TDRD6 WILD-TYPE" "TDRD6 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"TDRD6 WILD-TYPE" "TDRD6 WILD-TYPE"   "TDRD6 MUTATED" "TDRD6 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
  "TDRD6 MUTATED"   "TDRD6 MUTATED" "TDRD6 WILD-TYPE" "TDRD6 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
  "TDRD6 MUTATED" "TDRD6 WILD-TYPE" "TDRD6 WILD-TYPE"   "TDRD6 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"TDRD6 WILD-TYPE" "TDRD6 WILD-TYPE" "TDRD6 WILD-TYPE" "TDRD6 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
  "TDRD6 MUTATED" "TDRD6 WILD-TYPE" "TDRD6 WILD-TYPE" "TDRD6 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"TDRD6 WILD-TYPE" "TDRD6 WILD-TYPE" "TDRD6 WILD-TYPE" "TDRD6 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"TDRD6 WILD-TYPE" "TDRD6 WILD-TYPE" "TDRD6 WILD-TYPE" "TDRD6 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"TDRD6 WILD-TYPE" "TDRD6 WILD-TYPE" "TDRD6 WILD-TYPE" "TDRD6 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
  "TDRD6 MUTATED" "TDRD6 WILD-TYPE" "TDRD6 WILD-TYPE" "TDRD6 WILD-TYPE" 
     TCGA-US-A77J 
"TDRD6 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"TDRD6 WILD-TYPE" "TDRD6 WILD-TYPE" "TDRD6 WILD-TYPE"   "TDRD6 MUTATED" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"TDRD6 WILD-TYPE" "TDRD6 WILD-TYPE"   "TDRD6 MUTATED" "TDRD6 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"TDRD6 WILD-TYPE" "TDRD6 WILD-TYPE"   "TDRD6 MUTATED" "TDRD6 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"TDRD6 WILD-TYPE" "TDRD6 WILD-TYPE" "TDRD6 WILD-TYPE" "TDRD6 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"TDRD6 WILD-TYPE" "TDRD6 WILD-TYPE" "TDRD6 WILD-TYPE" "TDRD6 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"TDRD6 WILD-TYPE" "TDRD6 WILD-TYPE"   "TDRD6 MUTATED" "TDRD6 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"TDRD6 WILD-TYPE" "TDRD6 WILD-TYPE" "TDRD6 WILD-TYPE" "TDRD6 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"TDRD6 WILD-TYPE" "TDRD6 WILD-TYPE" "TDRD6 WILD-TYPE" "TDRD6 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"TDRD6 WILD-TYPE" "TDRD6 WILD-TYPE"   "TDRD6 MUTATED" "TDRD6 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
  "TDRD6 MUTATED"   "TDRD6 MUTATED" "TDRD6 WILD-TYPE" "TDRD6 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
  "TDRD6 MUTATED" "TDRD6 WILD-TYPE" "TDRD6 WILD-TYPE"   "TDRD6 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"TDRD6 WILD-TYPE" "TDRD6 WILD-TYPE" "TDRD6 WILD-TYPE" "TDRD6 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
  "TDRD6 MUTATED" "TDRD6 WILD-TYPE" "TDRD6 WILD-TYPE" "TDRD6 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"TDRD6 WILD-TYPE" "TDRD6 WILD-TYPE" "TDRD6 WILD-TYPE" "TDRD6 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"TDRD6 WILD-TYPE" "TDRD6 WILD-TYPE" "TDRD6 WILD-TYPE" "TDRD6 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"TDRD6 WILD-TYPE" "TDRD6 WILD-TYPE" "TDRD6 WILD-TYPE" "TDRD6 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
  "TDRD6 MUTATED" "TDRD6 WILD-TYPE" "TDRD6 WILD-TYPE" "TDRD6 WILD-TYPE" 
     TCGA-US-A77J 
"TDRD6 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"TDRD6 WILD-TYPE" "TDRD6 WILD-TYPE" "TDRD6 WILD-TYPE"   "TDRD6 MUTATED" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"TDRD6 WILD-TYPE" "TDRD6 WILD-TYPE"   "TDRD6 MUTATED" "TDRD6 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"TDRD6 WILD-TYPE" "TDRD6 WILD-TYPE"   "TDRD6 MUTATED" "TDRD6 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"TDRD6 WILD-TYPE" "TDRD6 WILD-TYPE" "TDRD6 WILD-TYPE" "TDRD6 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"TDRD6 WILD-TYPE" "TDRD6 WILD-TYPE" "TDRD6 WILD-TYPE" "TDRD6 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"TDRD6 WILD-TYPE" "TDRD6 WILD-TYPE"   "TDRD6 MUTATED" "TDRD6 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"TDRD6 WILD-TYPE" "TDRD6 WILD-TYPE" "TDRD6 WILD-TYPE" "TDRD6 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"TDRD6 WILD-TYPE" "TDRD6 WILD-TYPE" "TDRD6 WILD-TYPE" "TDRD6 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"TDRD6 WILD-TYPE" "TDRD6 WILD-TYPE"   "TDRD6 MUTATED" "TDRD6 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
  "TDRD6 MUTATED"   "TDRD6 MUTATED" "TDRD6 WILD-TYPE" "TDRD6 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
  "TDRD6 MUTATED" "TDRD6 WILD-TYPE" "TDRD6 WILD-TYPE"   "TDRD6 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"TDRD6 WILD-TYPE" "TDRD6 WILD-TYPE" "TDRD6 WILD-TYPE" "TDRD6 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
  "TDRD6 MUTATED" "TDRD6 WILD-TYPE" "TDRD6 WILD-TYPE" "TDRD6 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"TDRD6 WILD-TYPE" "TDRD6 WILD-TYPE" "TDRD6 WILD-TYPE" "TDRD6 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"TDRD6 WILD-TYPE" "TDRD6 WILD-TYPE" "TDRD6 WILD-TYPE" "TDRD6 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"TDRD6 WILD-TYPE" "TDRD6 WILD-TYPE" "TDRD6 WILD-TYPE" "TDRD6 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
  "TDRD6 MUTATED" "TDRD6 WILD-TYPE" "TDRD6 WILD-TYPE" "TDRD6 WILD-TYPE" 
     TCGA-US-A77J 
"TDRD6 WILD-TYPE" 
[1] "hr=" "1.2"
D120V2, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  TDRD6 MUTATED          0        0         2         9         0        0
  TDRD6 WILD-TYPE        1        4         9        42         2        3
D120V3, multiclass
                 vv
clus              T1+T2 T3+T4
  TDRD6 MUTATED       1    10
  TDRD6 WILD-TYPE     5    56
D120V4, multiclass
       clus
vv      TDRD6 MUTATED TDRD6 WILD-TYPE
  T1+T2             1               5
  T3+T4            10              56
D120V5, binary
                 cls
clus               0  1
  TDRD6 MUTATED    2  9
  TDRD6 WILD-TYPE 15 45
[1] "tbl2"
                 cls
clus              [,1] [,2]
  TDRD6 MUTATED      2    9
  TDRD6 WILD-TYPE   15   45
   clus
vv  TDRD6 MUTATED TDRD6 WILD-TYPE
  0             2              15
  1             9              45
                 vv
clus              M0 M1 MX
  TDRD6 MUTATED    5  0  6
  TDRD6 WILD-TYPE 34  3 24
D120V6, multiclass
    clus
vv   TDRD6 MUTATED TDRD6 WILD-TYPE
  M0             5              34
  M1             0               3
  MX             6              24
D120V7, binary
                 cls
clus               0  1
  TDRD6 MUTATED    6  5
  TDRD6 WILD-TYPE 30 31
[1] "tbl2"
                 cls
clus              [,1] [,2]
  TDRD6 MUTATED      6    5
  TDRD6 WILD-TYPE   30   31
        clus
vv       TDRD6 MUTATED TDRD6 WILD-TYPE
  FEMALE             6              30
  MALE               5              31
                 vv
clus              PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  TDRD6 MUTATED                                    10
  TDRD6 WILD-TYPE                                  55
                 vv
clus              PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  TDRD6 MUTATED                                       1
  TDRD6 WILD-TYPE                                     3
                 vv
clus              PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  TDRD6 MUTATED                                                  0
  TDRD6 WILD-TYPE                                                2
D120V8, multiclass
                                                  clus
vv                                                 TDRD6 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                         10
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                        1
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA             0
                                                  clus
vv                                                 TDRD6 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                           55
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                          3
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA               2
D120V9, continuous
D120V10, continuous
                 vv
clus              R0 R1 RX
  TDRD6 MUTATED    6  4  0
  TDRD6 WILD-TYPE 36 20  2
D120V11, multiclass
    clus
vv   TDRD6 MUTATED TDRD6 WILD-TYPE
  R0             6              36
  R1             4              20
  RX             0               2
D120V12, continuous

Clustering(121) Variable = KRAS MUTATION ANALYSIS
D121V1, survival
                sevent
clus2             0  1
  KRAS MUTATED   25 21
  KRAS WILD-TYPE 15  8
  KRAS MUTATED KRAS WILD-TYPE 
            46             23 
  KRAS MUTATED KRAS WILD-TYPE 
            21              8 
$`KRAS MUTATED`
TCGA-F2-6879 TCGA-F2-A44G TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A7DR TCGA-FZ-5920 
       10.98         5.03        12.66         2.47         5.46         2.01 
TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7919 
       36.20        20.81        12.89         7.66        13.02         0.66 
TCGA-HZ-7922 TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 
        0.13        11.87         0.26         0.62         0.79         0.69 
TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8636 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH 
        3.95         0.92         0.16         0.76         0.95         6.38 
TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 
        1.51        11.41        49.38         4.77        21.90        15.35 
TCGA-IB-7651 TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7889 
       19.82        15.65        27.98         4.04         3.62        15.81 
TCGA-IB-7890 TCGA-IB-7893 TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SS 
       19.66         3.85        17.16        10.82         9.86        15.12 
TCGA-IB-A6UG TCGA-OE-A75W TCGA-PZ-A5RE TCGA-US-A779 
        1.35         3.62         8.12        16.80 

$`KRAS WILD-TYPE`
TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44H TCGA-FB-A4P5 TCGA-FB-A4P6 
        9.70        11.84         7.10        19.27         0.13        11.93 
TCGA-FB-A78T TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-8317 
        0.03         7.89         0.92         0.26        12.13         0.53 
TCGA-HZ-8638 TCGA-IB-7888 TCGA-IB-7891 TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-A5SQ 
        2.99        43.79        16.04        15.98         0.56         7.20 
TCGA-IB-A5ST TCGA-LB-A7SX TCGA-Q3-A5QY TCGA-US-A77E TCGA-US-A77J 
        0.26         4.18        13.68        14.14        18.67 

  KRAS MUTATED KRAS WILD-TYPE 
          0.13           0.03 
  KRAS MUTATED KRAS WILD-TYPE 
         49.38          43.79 
  KRAS MUTATED KRAS WILD-TYPE 
          7.02           7.89 
[1] "0.1 - 49.4 (7.0)" "0.0 - 43.8 (7.9)"
    TCGA-F2-6879     TCGA-F2-6880     TCGA-F2-7273     TCGA-F2-7276 
  "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-F2-A44G     TCGA-F2-A44H     TCGA-FB-A4P5     TCGA-FB-A4P6 
  "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-FB-A545     TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-FB-A7DR 
  "KRAS MUTATED"   "KRAS MUTATED" "KRAS WILD-TYPE"   "KRAS MUTATED" 
    TCGA-FZ-5920     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-H6-8124 
  "KRAS MUTATED"   "KRAS MUTATED"   "KRAS MUTATED"   "KRAS MUTATED" 
    TCGA-H6-A45N     TCGA-H8-A6C1     TCGA-HZ-7289     TCGA-HZ-7918 
  "KRAS MUTATED"   "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-HZ-7919     TCGA-HZ-7922     TCGA-HZ-7923     TCGA-HZ-7924 
  "KRAS MUTATED"   "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-HZ-7925     TCGA-HZ-7926     TCGA-HZ-8001     TCGA-HZ-8002 
  "KRAS MUTATED"   "KRAS MUTATED"   "KRAS MUTATED"   "KRAS MUTATED" 
    TCGA-HZ-8003     TCGA-HZ-8005     TCGA-HZ-8315     TCGA-HZ-8317 
  "KRAS MUTATED"   "KRAS MUTATED"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-HZ-8636     TCGA-HZ-8638     TCGA-HZ-A49G     TCGA-HZ-A49H 
  "KRAS MUTATED" "KRAS WILD-TYPE"   "KRAS MUTATED"   "KRAS MUTATED" 
    TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-IB-7644     TCGA-IB-7645 
  "KRAS MUTATED"   "KRAS MUTATED"   "KRAS MUTATED"   "KRAS MUTATED" 
    TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7651 
  "KRAS MUTATED"   "KRAS MUTATED"   "KRAS MUTATED"   "KRAS MUTATED" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887 
  "KRAS MUTATED"   "KRAS MUTATED"   "KRAS MUTATED"   "KRAS MUTATED" 
    TCGA-IB-7888     TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891 
"KRAS WILD-TYPE"   "KRAS MUTATED"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-IB-7893     TCGA-IB-7897     TCGA-IB-8126     TCGA-IB-8127 
  "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" 
    TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS 
  "KRAS MUTATED"   "KRAS MUTATED" "KRAS WILD-TYPE"   "KRAS MUTATED" 
    TCGA-IB-A5ST     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
"KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE"   "KRAS MUTATED" 
    TCGA-PZ-A5RE     TCGA-Q3-A5QY     TCGA-US-A779     TCGA-US-A77E 
  "KRAS MUTATED" "KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-US-A77J 
"KRAS WILD-TYPE" 
    TCGA-F2-6879     TCGA-F2-6880     TCGA-F2-7273     TCGA-F2-7276 
  "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-F2-A44G     TCGA-F2-A44H     TCGA-FB-A4P5     TCGA-FB-A4P6 
  "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-FB-A545     TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-FB-A7DR 
  "KRAS MUTATED"   "KRAS MUTATED" "KRAS WILD-TYPE"   "KRAS MUTATED" 
    TCGA-FZ-5920     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-H6-8124 
  "KRAS MUTATED"   "KRAS MUTATED"   "KRAS MUTATED"   "KRAS MUTATED" 
    TCGA-H6-A45N     TCGA-H8-A6C1     TCGA-HZ-7289     TCGA-HZ-7918 
  "KRAS MUTATED"   "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-HZ-7919     TCGA-HZ-7922     TCGA-HZ-7923     TCGA-HZ-7924 
  "KRAS MUTATED"   "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-HZ-7925     TCGA-HZ-7926     TCGA-HZ-8001     TCGA-HZ-8002 
  "KRAS MUTATED"   "KRAS MUTATED"   "KRAS MUTATED"   "KRAS MUTATED" 
    TCGA-HZ-8003     TCGA-HZ-8005     TCGA-HZ-8315     TCGA-HZ-8317 
  "KRAS MUTATED"   "KRAS MUTATED"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-HZ-8636     TCGA-HZ-8638     TCGA-HZ-A49G     TCGA-HZ-A49H 
  "KRAS MUTATED" "KRAS WILD-TYPE"   "KRAS MUTATED"   "KRAS MUTATED" 
    TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-IB-7644     TCGA-IB-7645 
  "KRAS MUTATED"   "KRAS MUTATED"   "KRAS MUTATED"   "KRAS MUTATED" 
    TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7651 
  "KRAS MUTATED"   "KRAS MUTATED"   "KRAS MUTATED"   "KRAS MUTATED" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887 
  "KRAS MUTATED"   "KRAS MUTATED"   "KRAS MUTATED"   "KRAS MUTATED" 
    TCGA-IB-7888     TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891 
"KRAS WILD-TYPE"   "KRAS MUTATED"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-IB-7893     TCGA-IB-7897     TCGA-IB-8126     TCGA-IB-8127 
  "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" 
    TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS 
  "KRAS MUTATED"   "KRAS MUTATED" "KRAS WILD-TYPE"   "KRAS MUTATED" 
    TCGA-IB-A5ST     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
"KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE"   "KRAS MUTATED" 
    TCGA-PZ-A5RE     TCGA-Q3-A5QY     TCGA-US-A779     TCGA-US-A77E 
  "KRAS MUTATED" "KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-US-A77J 
"KRAS WILD-TYPE" 
    TCGA-F2-6879     TCGA-F2-6880     TCGA-F2-7273     TCGA-F2-7276 
  "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-F2-A44G     TCGA-F2-A44H     TCGA-FB-A4P5     TCGA-FB-A4P6 
  "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-FB-A545     TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-FB-A7DR 
  "KRAS MUTATED"   "KRAS MUTATED" "KRAS WILD-TYPE"   "KRAS MUTATED" 
    TCGA-FZ-5920     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-H6-8124 
  "KRAS MUTATED"   "KRAS MUTATED"   "KRAS MUTATED"   "KRAS MUTATED" 
    TCGA-H6-A45N     TCGA-H8-A6C1     TCGA-HZ-7289     TCGA-HZ-7918 
  "KRAS MUTATED"   "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-HZ-7919     TCGA-HZ-7922     TCGA-HZ-7923     TCGA-HZ-7924 
  "KRAS MUTATED"   "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-HZ-7925     TCGA-HZ-7926     TCGA-HZ-8001     TCGA-HZ-8002 
  "KRAS MUTATED"   "KRAS MUTATED"   "KRAS MUTATED"   "KRAS MUTATED" 
    TCGA-HZ-8003     TCGA-HZ-8005     TCGA-HZ-8315     TCGA-HZ-8317 
  "KRAS MUTATED"   "KRAS MUTATED"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-HZ-8636     TCGA-HZ-8638     TCGA-HZ-A49G     TCGA-HZ-A49H 
  "KRAS MUTATED" "KRAS WILD-TYPE"   "KRAS MUTATED"   "KRAS MUTATED" 
    TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-IB-7644     TCGA-IB-7645 
  "KRAS MUTATED"   "KRAS MUTATED"   "KRAS MUTATED"   "KRAS MUTATED" 
    TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7651 
  "KRAS MUTATED"   "KRAS MUTATED"   "KRAS MUTATED"   "KRAS MUTATED" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887 
  "KRAS MUTATED"   "KRAS MUTATED"   "KRAS MUTATED"   "KRAS MUTATED" 
    TCGA-IB-7888     TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891 
"KRAS WILD-TYPE"   "KRAS MUTATED"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-IB-7893     TCGA-IB-7897     TCGA-IB-8126     TCGA-IB-8127 
  "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" 
    TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS 
  "KRAS MUTATED"   "KRAS MUTATED" "KRAS WILD-TYPE"   "KRAS MUTATED" 
    TCGA-IB-A5ST     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
"KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE"   "KRAS MUTATED" 
    TCGA-PZ-A5RE     TCGA-Q3-A5QY     TCGA-US-A779     TCGA-US-A77E 
  "KRAS MUTATED" "KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-US-A77J 
"KRAS WILD-TYPE" 
[1] "hr=" "1.1"
D121V2, continuous
                vv
clus             STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  KRAS MUTATED          0        2         7        35         1        3
  KRAS WILD-TYPE        1        2         4        16         1        0
D121V3, multiclass
                vv
clus             T1+T2 T3+T4
  KRAS MUTATED       3    45
  KRAS WILD-TYPE     3    21
D121V4, multiclass
       clus
vv      KRAS MUTATED KRAS WILD-TYPE
  T1+T2            3              3
  T3+T4           45             21
D121V5, binary
                cls
clus              0  1
  KRAS MUTATED   10 37
  KRAS WILD-TYPE  7 17
[1] "tbl2"
                cls
clus             [,1] [,2]
  KRAS MUTATED     10   37
  KRAS WILD-TYPE    7   17
   clus
vv  KRAS MUTATED KRAS WILD-TYPE
  0           10              7
  1           37             17
                vv
clus             M0 M1 MX
  KRAS MUTATED   27  3 18
  KRAS WILD-TYPE 12  0 12
D121V6, multiclass
    clus
vv   KRAS MUTATED KRAS WILD-TYPE
  M0           27             12
  M1            3              0
  MX           18             12
D121V7, binary
                cls
clus              0  1
  KRAS MUTATED   24 24
  KRAS WILD-TYPE 12 12
[1] "tbl2"
                cls
clus             [,1] [,2]
  KRAS MUTATED     24   24
  KRAS WILD-TYPE   12   12
        clus
vv       KRAS MUTATED KRAS WILD-TYPE
  FEMALE           24             12
  MALE             24             12
                vv
clus             PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  KRAS MUTATED                                    43
  KRAS WILD-TYPE                                  22
                vv
clus             PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  KRAS MUTATED                                       3
  KRAS WILD-TYPE                                     1
                vv
clus             PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  KRAS MUTATED                                                  1
  KRAS WILD-TYPE                                                1
D121V8, multiclass
                                                  clus
vv                                                 KRAS MUTATED KRAS WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                        43             22
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                       3              1
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA            1              1
D121V9, continuous
D121V10, continuous
                vv
clus             R0 R1 RX
  KRAS MUTATED   25 19  1
  KRAS WILD-TYPE 17  5  1
D121V11, multiclass
    clus
vv   KRAS MUTATED KRAS WILD-TYPE
  R0           25             17
  R1           19              5
  RX            1              1
D121V12, continuous

Clustering(122) Variable = CIR1 MUTATION ANALYSIS
D122V1, survival
                sevent
clus2             0  1
  CIR1 MUTATED    6  6
  CIR1 WILD-TYPE 34 23
  CIR1 MUTATED CIR1 WILD-TYPE 
            12             57 
  CIR1 MUTATED CIR1 WILD-TYPE 
             6             23 
$`CIR1 MUTATED`
TCGA-F2-A44H TCGA-H6-8124 TCGA-H6-A45N TCGA-HZ-7289 TCGA-HZ-7923 TCGA-HZ-8005 
       19.27        12.89         7.66         7.89         0.26         3.95 
TCGA-HZ-8317 TCGA-IB-7644 TCGA-IB-7646 TCGA-IB-7651 TCGA-IB-7891 TCGA-IB-A6UG 
        0.53        11.41         4.77        19.82        16.04         1.35 

$`CIR1 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-FB-A4P5 
       10.98         9.70        11.84         7.10         5.03         0.13 
TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR TCGA-FZ-5920 
       11.93        12.66         2.47         0.03         5.46         2.01 
TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H8-A6C1 TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7922 
       36.20        20.81        13.02         0.92         0.66         0.13 
TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 
       12.13        11.87         0.26         0.62         0.79         0.69 
TCGA-HZ-8315 TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH 
        0.92         0.16         2.99         0.76         0.95         6.38 
TCGA-HZ-A4BK TCGA-IB-7645 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7652 TCGA-IB-7885 
        1.51        49.38        21.90        15.35        15.65        27.98 
TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7893 
        4.04         3.62        43.79        15.81        19.66         3.85 
TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ 
       15.98         0.56        17.16        10.82         9.86         7.20 
TCGA-IB-A5SS TCGA-IB-A5ST TCGA-LB-A7SX TCGA-OE-A75W TCGA-PZ-A5RE TCGA-Q3-A5QY 
       15.12         0.26         4.18         3.62         8.12        13.68 
TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
       16.80        14.14        18.67 

  CIR1 MUTATED CIR1 WILD-TYPE 
          0.26           0.03 
  CIR1 MUTATED CIR1 WILD-TYPE 
         19.82          49.38 
  CIR1 MUTATED CIR1 WILD-TYPE 
         7.775          7.200 
[1] "0.3 - 19.8 (7.8)" "0.0 - 49.4 (7.2)"
    TCGA-F2-6879     TCGA-F2-6880     TCGA-F2-7273     TCGA-F2-7276 
"CIR1 WILD-TYPE" "CIR1 WILD-TYPE" "CIR1 WILD-TYPE" "CIR1 WILD-TYPE" 
    TCGA-F2-A44G     TCGA-F2-A44H     TCGA-FB-A4P5     TCGA-FB-A4P6 
"CIR1 WILD-TYPE"   "CIR1 MUTATED" "CIR1 WILD-TYPE" "CIR1 WILD-TYPE" 
    TCGA-FB-A545     TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-FB-A7DR 
"CIR1 WILD-TYPE" "CIR1 WILD-TYPE" "CIR1 WILD-TYPE" "CIR1 WILD-TYPE" 
    TCGA-FZ-5920     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-H6-8124 
"CIR1 WILD-TYPE" "CIR1 WILD-TYPE" "CIR1 WILD-TYPE"   "CIR1 MUTATED" 
    TCGA-H6-A45N     TCGA-H8-A6C1     TCGA-HZ-7289     TCGA-HZ-7918 
  "CIR1 MUTATED" "CIR1 WILD-TYPE"   "CIR1 MUTATED" "CIR1 WILD-TYPE" 
    TCGA-HZ-7919     TCGA-HZ-7922     TCGA-HZ-7923     TCGA-HZ-7924 
"CIR1 WILD-TYPE" "CIR1 WILD-TYPE"   "CIR1 MUTATED" "CIR1 WILD-TYPE" 
    TCGA-HZ-7925     TCGA-HZ-7926     TCGA-HZ-8001     TCGA-HZ-8002 
"CIR1 WILD-TYPE" "CIR1 WILD-TYPE" "CIR1 WILD-TYPE" "CIR1 WILD-TYPE" 
    TCGA-HZ-8003     TCGA-HZ-8005     TCGA-HZ-8315     TCGA-HZ-8317 
"CIR1 WILD-TYPE"   "CIR1 MUTATED" "CIR1 WILD-TYPE"   "CIR1 MUTATED" 
    TCGA-HZ-8636     TCGA-HZ-8638     TCGA-HZ-A49G     TCGA-HZ-A49H 
"CIR1 WILD-TYPE" "CIR1 WILD-TYPE" "CIR1 WILD-TYPE" "CIR1 WILD-TYPE" 
    TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-IB-7644     TCGA-IB-7645 
"CIR1 WILD-TYPE" "CIR1 WILD-TYPE"   "CIR1 MUTATED" "CIR1 WILD-TYPE" 
    TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7651 
  "CIR1 MUTATED" "CIR1 WILD-TYPE" "CIR1 WILD-TYPE"   "CIR1 MUTATED" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887 
"CIR1 WILD-TYPE" "CIR1 WILD-TYPE" "CIR1 WILD-TYPE" "CIR1 WILD-TYPE" 
    TCGA-IB-7888     TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891 
"CIR1 WILD-TYPE" "CIR1 WILD-TYPE" "CIR1 WILD-TYPE"   "CIR1 MUTATED" 
    TCGA-IB-7893     TCGA-IB-7897     TCGA-IB-8126     TCGA-IB-8127 
"CIR1 WILD-TYPE" "CIR1 WILD-TYPE" "CIR1 WILD-TYPE" "CIR1 WILD-TYPE" 
    TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS 
"CIR1 WILD-TYPE" "CIR1 WILD-TYPE" "CIR1 WILD-TYPE" "CIR1 WILD-TYPE" 
    TCGA-IB-A5ST     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
"CIR1 WILD-TYPE"   "CIR1 MUTATED" "CIR1 WILD-TYPE" "CIR1 WILD-TYPE" 
    TCGA-PZ-A5RE     TCGA-Q3-A5QY     TCGA-US-A779     TCGA-US-A77E 
"CIR1 WILD-TYPE" "CIR1 WILD-TYPE" "CIR1 WILD-TYPE" "CIR1 WILD-TYPE" 
    TCGA-US-A77J 
"CIR1 WILD-TYPE" 
    TCGA-F2-6879     TCGA-F2-6880     TCGA-F2-7273     TCGA-F2-7276 
"CIR1 WILD-TYPE" "CIR1 WILD-TYPE" "CIR1 WILD-TYPE" "CIR1 WILD-TYPE" 
    TCGA-F2-A44G     TCGA-F2-A44H     TCGA-FB-A4P5     TCGA-FB-A4P6 
"CIR1 WILD-TYPE"   "CIR1 MUTATED" "CIR1 WILD-TYPE" "CIR1 WILD-TYPE" 
    TCGA-FB-A545     TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-FB-A7DR 
"CIR1 WILD-TYPE" "CIR1 WILD-TYPE" "CIR1 WILD-TYPE" "CIR1 WILD-TYPE" 
    TCGA-FZ-5920     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-H6-8124 
"CIR1 WILD-TYPE" "CIR1 WILD-TYPE" "CIR1 WILD-TYPE"   "CIR1 MUTATED" 
    TCGA-H6-A45N     TCGA-H8-A6C1     TCGA-HZ-7289     TCGA-HZ-7918 
  "CIR1 MUTATED" "CIR1 WILD-TYPE"   "CIR1 MUTATED" "CIR1 WILD-TYPE" 
    TCGA-HZ-7919     TCGA-HZ-7922     TCGA-HZ-7923     TCGA-HZ-7924 
"CIR1 WILD-TYPE" "CIR1 WILD-TYPE"   "CIR1 MUTATED" "CIR1 WILD-TYPE" 
    TCGA-HZ-7925     TCGA-HZ-7926     TCGA-HZ-8001     TCGA-HZ-8002 
"CIR1 WILD-TYPE" "CIR1 WILD-TYPE" "CIR1 WILD-TYPE" "CIR1 WILD-TYPE" 
    TCGA-HZ-8003     TCGA-HZ-8005     TCGA-HZ-8315     TCGA-HZ-8317 
"CIR1 WILD-TYPE"   "CIR1 MUTATED" "CIR1 WILD-TYPE"   "CIR1 MUTATED" 
    TCGA-HZ-8636     TCGA-HZ-8638     TCGA-HZ-A49G     TCGA-HZ-A49H 
"CIR1 WILD-TYPE" "CIR1 WILD-TYPE" "CIR1 WILD-TYPE" "CIR1 WILD-TYPE" 
    TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-IB-7644     TCGA-IB-7645 
"CIR1 WILD-TYPE" "CIR1 WILD-TYPE"   "CIR1 MUTATED" "CIR1 WILD-TYPE" 
    TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7651 
  "CIR1 MUTATED" "CIR1 WILD-TYPE" "CIR1 WILD-TYPE"   "CIR1 MUTATED" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887 
"CIR1 WILD-TYPE" "CIR1 WILD-TYPE" "CIR1 WILD-TYPE" "CIR1 WILD-TYPE" 
    TCGA-IB-7888     TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891 
"CIR1 WILD-TYPE" "CIR1 WILD-TYPE" "CIR1 WILD-TYPE"   "CIR1 MUTATED" 
    TCGA-IB-7893     TCGA-IB-7897     TCGA-IB-8126     TCGA-IB-8127 
"CIR1 WILD-TYPE" "CIR1 WILD-TYPE" "CIR1 WILD-TYPE" "CIR1 WILD-TYPE" 
    TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS 
"CIR1 WILD-TYPE" "CIR1 WILD-TYPE" "CIR1 WILD-TYPE" "CIR1 WILD-TYPE" 
    TCGA-IB-A5ST     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
"CIR1 WILD-TYPE"   "CIR1 MUTATED" "CIR1 WILD-TYPE" "CIR1 WILD-TYPE" 
    TCGA-PZ-A5RE     TCGA-Q3-A5QY     TCGA-US-A779     TCGA-US-A77E 
"CIR1 WILD-TYPE" "CIR1 WILD-TYPE" "CIR1 WILD-TYPE" "CIR1 WILD-TYPE" 
    TCGA-US-A77J 
"CIR1 WILD-TYPE" 
    TCGA-F2-6879     TCGA-F2-6880     TCGA-F2-7273     TCGA-F2-7276 
"CIR1 WILD-TYPE" "CIR1 WILD-TYPE" "CIR1 WILD-TYPE" "CIR1 WILD-TYPE" 
    TCGA-F2-A44G     TCGA-F2-A44H     TCGA-FB-A4P5     TCGA-FB-A4P6 
"CIR1 WILD-TYPE"   "CIR1 MUTATED" "CIR1 WILD-TYPE" "CIR1 WILD-TYPE" 
    TCGA-FB-A545     TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-FB-A7DR 
"CIR1 WILD-TYPE" "CIR1 WILD-TYPE" "CIR1 WILD-TYPE" "CIR1 WILD-TYPE" 
    TCGA-FZ-5920     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-H6-8124 
"CIR1 WILD-TYPE" "CIR1 WILD-TYPE" "CIR1 WILD-TYPE"   "CIR1 MUTATED" 
    TCGA-H6-A45N     TCGA-H8-A6C1     TCGA-HZ-7289     TCGA-HZ-7918 
  "CIR1 MUTATED" "CIR1 WILD-TYPE"   "CIR1 MUTATED" "CIR1 WILD-TYPE" 
    TCGA-HZ-7919     TCGA-HZ-7922     TCGA-HZ-7923     TCGA-HZ-7924 
"CIR1 WILD-TYPE" "CIR1 WILD-TYPE"   "CIR1 MUTATED" "CIR1 WILD-TYPE" 
    TCGA-HZ-7925     TCGA-HZ-7926     TCGA-HZ-8001     TCGA-HZ-8002 
"CIR1 WILD-TYPE" "CIR1 WILD-TYPE" "CIR1 WILD-TYPE" "CIR1 WILD-TYPE" 
    TCGA-HZ-8003     TCGA-HZ-8005     TCGA-HZ-8315     TCGA-HZ-8317 
"CIR1 WILD-TYPE"   "CIR1 MUTATED" "CIR1 WILD-TYPE"   "CIR1 MUTATED" 
    TCGA-HZ-8636     TCGA-HZ-8638     TCGA-HZ-A49G     TCGA-HZ-A49H 
"CIR1 WILD-TYPE" "CIR1 WILD-TYPE" "CIR1 WILD-TYPE" "CIR1 WILD-TYPE" 
    TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-IB-7644     TCGA-IB-7645 
"CIR1 WILD-TYPE" "CIR1 WILD-TYPE"   "CIR1 MUTATED" "CIR1 WILD-TYPE" 
    TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7651 
  "CIR1 MUTATED" "CIR1 WILD-TYPE" "CIR1 WILD-TYPE"   "CIR1 MUTATED" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887 
"CIR1 WILD-TYPE" "CIR1 WILD-TYPE" "CIR1 WILD-TYPE" "CIR1 WILD-TYPE" 
    TCGA-IB-7888     TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891 
"CIR1 WILD-TYPE" "CIR1 WILD-TYPE" "CIR1 WILD-TYPE"   "CIR1 MUTATED" 
    TCGA-IB-7893     TCGA-IB-7897     TCGA-IB-8126     TCGA-IB-8127 
"CIR1 WILD-TYPE" "CIR1 WILD-TYPE" "CIR1 WILD-TYPE" "CIR1 WILD-TYPE" 
    TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS 
"CIR1 WILD-TYPE" "CIR1 WILD-TYPE" "CIR1 WILD-TYPE" "CIR1 WILD-TYPE" 
    TCGA-IB-A5ST     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
"CIR1 WILD-TYPE"   "CIR1 MUTATED" "CIR1 WILD-TYPE" "CIR1 WILD-TYPE" 
    TCGA-PZ-A5RE     TCGA-Q3-A5QY     TCGA-US-A779     TCGA-US-A77E 
"CIR1 WILD-TYPE" "CIR1 WILD-TYPE" "CIR1 WILD-TYPE" "CIR1 WILD-TYPE" 
    TCGA-US-A77J 
"CIR1 WILD-TYPE" 
[1] "hr=" "1.5"
D122V2, continuous
                vv
clus             STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  CIR1 MUTATED          0        0         2         9         0        1
  CIR1 WILD-TYPE        1        4         9        42         2        2
D122V3, multiclass
                vv
clus             T1+T2 T3+T4
  CIR1 MUTATED       0    12
  CIR1 WILD-TYPE     6    54
D122V4, multiclass
       clus
vv      CIR1 MUTATED CIR1 WILD-TYPE
  T1+T2            0              6
  T3+T4           12             54
D122V5, binary
                cls
clus              0  1
  CIR1 MUTATED    2 10
  CIR1 WILD-TYPE 15 44
[1] "tbl2"
                cls
clus             [,1] [,2]
  CIR1 MUTATED      2   10
  CIR1 WILD-TYPE   15   44
   clus
vv  CIR1 MUTATED CIR1 WILD-TYPE
  0            2             15
  1           10             44
                vv
clus             M0 M1 MX
  CIR1 MUTATED    6  1  5
  CIR1 WILD-TYPE 33  2 25
D122V6, multiclass
    clus
vv   CIR1 MUTATED CIR1 WILD-TYPE
  M0            6             33
  M1            1              2
  MX            5             25
D122V7, binary
                cls
clus              0  1
  CIR1 MUTATED    5  7
  CIR1 WILD-TYPE 31 29
[1] "tbl2"
                cls
clus             [,1] [,2]
  CIR1 MUTATED      5    7
  CIR1 WILD-TYPE   31   29
        clus
vv       CIR1 MUTATED CIR1 WILD-TYPE
  FEMALE            5             31
  MALE              7             29
                vv
clus             PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  CIR1 MUTATED                                    10
  CIR1 WILD-TYPE                                  55
                vv
clus             PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  CIR1 MUTATED                                       2
  CIR1 WILD-TYPE                                     2
                vv
clus             PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  CIR1 MUTATED                                                  0
  CIR1 WILD-TYPE                                                2
D122V8, multiclass
                                                  clus
vv                                                 CIR1 MUTATED CIR1 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                        10             55
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                       2              2
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA            0              2
D122V9, continuous
D122V10, continuous
                vv
clus             R0 R1 RX
  CIR1 MUTATED    5  5  1
  CIR1 WILD-TYPE 37 19  1
D122V11, multiclass
    clus
vv   CIR1 MUTATED CIR1 WILD-TYPE
  R0            5             37
  R1            5             19
  RX            1              1
D122V12, continuous

Clustering(123) Variable = ZMYM5 MUTATION ANALYSIS
D123V1, survival
                 sevent
clus2              0  1
  ZMYM5 MUTATED    5  2
  ZMYM5 WILD-TYPE 35 27
  ZMYM5 MUTATED ZMYM5 WILD-TYPE 
              7              62 
  ZMYM5 MUTATED ZMYM5 WILD-TYPE 
              2              27 
$`ZMYM5 MUTATED`
TCGA-F2-A44H TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7925 TCGA-HZ-A49H 
       19.27        12.89         7.66        13.02        11.87         0.95 
TCGA-IB-7651 
       19.82 

$`ZMYM5 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-FB-A4P5 
       10.98         9.70        11.84         7.10         5.03         0.13 
TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR TCGA-FZ-5920 
       11.93        12.66         2.47         0.03         5.46         2.01 
TCGA-FZ-5922 TCGA-FZ-5923 TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7922 
       36.20        20.81         7.89         0.92         0.66         0.13 
TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 
        0.26        12.13         0.26         0.62         0.79         0.69 
TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G 
        3.95         0.92         0.53         0.16         2.99         0.76 
TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 
        6.38         1.51        11.41        49.38         4.77        21.90 
TCGA-IB-7649 TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7888 
       15.35        15.65        27.98         4.04         3.62        43.79 
TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-8126 
       15.81        19.66        16.04         3.85        15.98         0.56 
TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST 
       17.16        10.82         9.86         7.20        15.12         0.26 
TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 
        1.35         4.18         3.62         8.12        13.68        16.80 
TCGA-US-A77E TCGA-US-A77J 
       14.14        18.67 

  ZMYM5 MUTATED ZMYM5 WILD-TYPE 
           0.95            0.03 
  ZMYM5 MUTATED ZMYM5 WILD-TYPE 
          19.82           49.38 
  ZMYM5 MUTATED ZMYM5 WILD-TYPE 
          12.89            6.74 
[1] "0.9 - 19.8 (12.9)" "0.0 - 49.4 (6.7)" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"ZMYM5 WILD-TYPE" "ZMYM5 WILD-TYPE" "ZMYM5 WILD-TYPE" "ZMYM5 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"ZMYM5 WILD-TYPE"   "ZMYM5 MUTATED" "ZMYM5 WILD-TYPE" "ZMYM5 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"ZMYM5 WILD-TYPE" "ZMYM5 WILD-TYPE" "ZMYM5 WILD-TYPE" "ZMYM5 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"ZMYM5 WILD-TYPE" "ZMYM5 WILD-TYPE" "ZMYM5 WILD-TYPE"   "ZMYM5 MUTATED" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
  "ZMYM5 MUTATED"   "ZMYM5 MUTATED" "ZMYM5 WILD-TYPE" "ZMYM5 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"ZMYM5 WILD-TYPE" "ZMYM5 WILD-TYPE" "ZMYM5 WILD-TYPE" "ZMYM5 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
  "ZMYM5 MUTATED" "ZMYM5 WILD-TYPE" "ZMYM5 WILD-TYPE" "ZMYM5 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"ZMYM5 WILD-TYPE" "ZMYM5 WILD-TYPE" "ZMYM5 WILD-TYPE" "ZMYM5 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"ZMYM5 WILD-TYPE" "ZMYM5 WILD-TYPE" "ZMYM5 WILD-TYPE"   "ZMYM5 MUTATED" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"ZMYM5 WILD-TYPE" "ZMYM5 WILD-TYPE" "ZMYM5 WILD-TYPE" "ZMYM5 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"ZMYM5 WILD-TYPE" "ZMYM5 WILD-TYPE" "ZMYM5 WILD-TYPE"   "ZMYM5 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"ZMYM5 WILD-TYPE" "ZMYM5 WILD-TYPE" "ZMYM5 WILD-TYPE" "ZMYM5 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"ZMYM5 WILD-TYPE" "ZMYM5 WILD-TYPE" "ZMYM5 WILD-TYPE" "ZMYM5 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"ZMYM5 WILD-TYPE" "ZMYM5 WILD-TYPE" "ZMYM5 WILD-TYPE" "ZMYM5 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"ZMYM5 WILD-TYPE" "ZMYM5 WILD-TYPE" "ZMYM5 WILD-TYPE" "ZMYM5 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"ZMYM5 WILD-TYPE" "ZMYM5 WILD-TYPE" "ZMYM5 WILD-TYPE" "ZMYM5 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"ZMYM5 WILD-TYPE" "ZMYM5 WILD-TYPE" "ZMYM5 WILD-TYPE" "ZMYM5 WILD-TYPE" 
     TCGA-US-A77J 
"ZMYM5 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"ZMYM5 WILD-TYPE" "ZMYM5 WILD-TYPE" "ZMYM5 WILD-TYPE" "ZMYM5 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"ZMYM5 WILD-TYPE"   "ZMYM5 MUTATED" "ZMYM5 WILD-TYPE" "ZMYM5 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"ZMYM5 WILD-TYPE" "ZMYM5 WILD-TYPE" "ZMYM5 WILD-TYPE" "ZMYM5 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"ZMYM5 WILD-TYPE" "ZMYM5 WILD-TYPE" "ZMYM5 WILD-TYPE"   "ZMYM5 MUTATED" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
  "ZMYM5 MUTATED"   "ZMYM5 MUTATED" "ZMYM5 WILD-TYPE" "ZMYM5 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"ZMYM5 WILD-TYPE" "ZMYM5 WILD-TYPE" "ZMYM5 WILD-TYPE" "ZMYM5 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
  "ZMYM5 MUTATED" "ZMYM5 WILD-TYPE" "ZMYM5 WILD-TYPE" "ZMYM5 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"ZMYM5 WILD-TYPE" "ZMYM5 WILD-TYPE" "ZMYM5 WILD-TYPE" "ZMYM5 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"ZMYM5 WILD-TYPE" "ZMYM5 WILD-TYPE" "ZMYM5 WILD-TYPE"   "ZMYM5 MUTATED" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"ZMYM5 WILD-TYPE" "ZMYM5 WILD-TYPE" "ZMYM5 WILD-TYPE" "ZMYM5 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"ZMYM5 WILD-TYPE" "ZMYM5 WILD-TYPE" "ZMYM5 WILD-TYPE"   "ZMYM5 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"ZMYM5 WILD-TYPE" "ZMYM5 WILD-TYPE" "ZMYM5 WILD-TYPE" "ZMYM5 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"ZMYM5 WILD-TYPE" "ZMYM5 WILD-TYPE" "ZMYM5 WILD-TYPE" "ZMYM5 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"ZMYM5 WILD-TYPE" "ZMYM5 WILD-TYPE" "ZMYM5 WILD-TYPE" "ZMYM5 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"ZMYM5 WILD-TYPE" "ZMYM5 WILD-TYPE" "ZMYM5 WILD-TYPE" "ZMYM5 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"ZMYM5 WILD-TYPE" "ZMYM5 WILD-TYPE" "ZMYM5 WILD-TYPE" "ZMYM5 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"ZMYM5 WILD-TYPE" "ZMYM5 WILD-TYPE" "ZMYM5 WILD-TYPE" "ZMYM5 WILD-TYPE" 
     TCGA-US-A77J 
"ZMYM5 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"ZMYM5 WILD-TYPE" "ZMYM5 WILD-TYPE" "ZMYM5 WILD-TYPE" "ZMYM5 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"ZMYM5 WILD-TYPE"   "ZMYM5 MUTATED" "ZMYM5 WILD-TYPE" "ZMYM5 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"ZMYM5 WILD-TYPE" "ZMYM5 WILD-TYPE" "ZMYM5 WILD-TYPE" "ZMYM5 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"ZMYM5 WILD-TYPE" "ZMYM5 WILD-TYPE" "ZMYM5 WILD-TYPE"   "ZMYM5 MUTATED" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
  "ZMYM5 MUTATED"   "ZMYM5 MUTATED" "ZMYM5 WILD-TYPE" "ZMYM5 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"ZMYM5 WILD-TYPE" "ZMYM5 WILD-TYPE" "ZMYM5 WILD-TYPE" "ZMYM5 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
  "ZMYM5 MUTATED" "ZMYM5 WILD-TYPE" "ZMYM5 WILD-TYPE" "ZMYM5 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"ZMYM5 WILD-TYPE" "ZMYM5 WILD-TYPE" "ZMYM5 WILD-TYPE" "ZMYM5 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"ZMYM5 WILD-TYPE" "ZMYM5 WILD-TYPE" "ZMYM5 WILD-TYPE"   "ZMYM5 MUTATED" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"ZMYM5 WILD-TYPE" "ZMYM5 WILD-TYPE" "ZMYM5 WILD-TYPE" "ZMYM5 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"ZMYM5 WILD-TYPE" "ZMYM5 WILD-TYPE" "ZMYM5 WILD-TYPE"   "ZMYM5 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"ZMYM5 WILD-TYPE" "ZMYM5 WILD-TYPE" "ZMYM5 WILD-TYPE" "ZMYM5 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"ZMYM5 WILD-TYPE" "ZMYM5 WILD-TYPE" "ZMYM5 WILD-TYPE" "ZMYM5 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"ZMYM5 WILD-TYPE" "ZMYM5 WILD-TYPE" "ZMYM5 WILD-TYPE" "ZMYM5 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"ZMYM5 WILD-TYPE" "ZMYM5 WILD-TYPE" "ZMYM5 WILD-TYPE" "ZMYM5 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"ZMYM5 WILD-TYPE" "ZMYM5 WILD-TYPE" "ZMYM5 WILD-TYPE" "ZMYM5 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"ZMYM5 WILD-TYPE" "ZMYM5 WILD-TYPE" "ZMYM5 WILD-TYPE" "ZMYM5 WILD-TYPE" 
     TCGA-US-A77J 
"ZMYM5 WILD-TYPE" 
[1] "hr=" "1.9"
D123V2, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  ZMYM5 MUTATED          0        0         2         6         0        0
  ZMYM5 WILD-TYPE        1        4         9        45         2        3
D123V3, multiclass
                 vv
clus              T1+T2 T3+T4
  ZMYM5 MUTATED       0     8
  ZMYM5 WILD-TYPE     6    58
D123V4, multiclass
       clus
vv      ZMYM5 MUTATED ZMYM5 WILD-TYPE
  T1+T2             0               6
  T3+T4             8              58
D123V5, binary
                 cls
clus               0  1
  ZMYM5 MUTATED    2  6
  ZMYM5 WILD-TYPE 15 48
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ZMYM5 MUTATED      2    6
  ZMYM5 WILD-TYPE   15   48
   clus
vv  ZMYM5 MUTATED ZMYM5 WILD-TYPE
  0             2              15
  1             6              48
                 vv
clus              M0 M1 MX
  ZMYM5 MUTATED    3  0  5
  ZMYM5 WILD-TYPE 36  3 25
D123V6, multiclass
    clus
vv   ZMYM5 MUTATED ZMYM5 WILD-TYPE
  M0             3              36
  M1             0               3
  MX             5              25
D123V7, binary
                 cls
clus               0  1
  ZMYM5 MUTATED    4  4
  ZMYM5 WILD-TYPE 32 32
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ZMYM5 MUTATED      4    4
  ZMYM5 WILD-TYPE   32   32
        clus
vv       ZMYM5 MUTATED ZMYM5 WILD-TYPE
  FEMALE             4              32
  MALE               4              32
                 vv
clus              PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  ZMYM5 MUTATED                                     6
  ZMYM5 WILD-TYPE                                  59
                 vv
clus              PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  ZMYM5 MUTATED                                       2
  ZMYM5 WILD-TYPE                                     2
                 vv
clus              PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  ZMYM5 MUTATED                                                  0
  ZMYM5 WILD-TYPE                                                2
D123V8, multiclass
                                                  clus
vv                                                 ZMYM5 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                          6
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                        2
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA             0
                                                  clus
vv                                                 ZMYM5 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                           59
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                          2
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA               2
D123V9, continuous
D123V10, continuous
                 vv
clus              R0 R1 RX
  ZMYM5 MUTATED    6  1  0
  ZMYM5 WILD-TYPE 36 23  2
D123V11, multiclass
    clus
vv   ZMYM5 MUTATED ZMYM5 WILD-TYPE
  R0             6              36
  R1             1              23
  RX             0               2
D123V12, continuous

Clustering(124) Variable = TMEM184A MUTATION ANALYSIS
D124V1, survival
                    sevent
clus2                 0  1
  TMEM184A MUTATED   10  5
  TMEM184A WILD-TYPE 30 24
  TMEM184A MUTATED TMEM184A WILD-TYPE 
                15                 54 
  TMEM184A MUTATED TMEM184A WILD-TYPE 
                 5                 24 
$`TMEM184A MUTATED`
TCGA-F2-6879 TCGA-F2-6880 TCGA-FB-A5VM TCGA-H6-8124 TCGA-HZ-7919 TCGA-HZ-7922 
       10.98         9.70         2.47        12.89         0.66         0.13 
TCGA-HZ-7923 TCGA-HZ-8317 TCGA-HZ-8636 TCGA-HZ-8638 TCGA-IB-7647 TCGA-IB-7651 
        0.26         0.53         0.16         2.99        21.90        19.82 
TCGA-IB-7888 TCGA-IB-A5SQ TCGA-PZ-A5RE 
       43.79         7.20         8.12 

$`TMEM184A WILD-TYPE`
TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H TCGA-FB-A4P5 TCGA-FB-A4P6 
       11.84         7.10         5.03        19.27         0.13        11.93 
TCGA-FB-A545 TCGA-FB-A78T TCGA-FB-A7DR TCGA-FZ-5920 TCGA-FZ-5922 TCGA-FZ-5923 
       12.66         0.03         5.46         2.01        36.20        20.81 
TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-7924 TCGA-HZ-7925 
        7.66        13.02         7.89         0.92        12.13        11.87 
TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 
        0.26         0.62         0.79         0.69         3.95         0.92 
TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7645 
        0.76         0.95         6.38         1.51        11.41        49.38 
TCGA-IB-7646 TCGA-IB-7649 TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 
        4.77        15.35        15.65        27.98         4.04         3.62 
TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-8126 
       15.81        19.66        16.04         3.85        15.98         0.56 
TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG 
       17.16        10.82         9.86        15.12         0.26         1.35 
TCGA-LB-A7SX TCGA-OE-A75W TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
        4.18         3.62        13.68        16.80        14.14        18.67 

  TMEM184A MUTATED TMEM184A WILD-TYPE 
              0.13               0.03 
  TMEM184A MUTATED TMEM184A WILD-TYPE 
             43.79              49.38 
  TMEM184A MUTATED TMEM184A WILD-TYPE 
             7.200              7.775 
[1] "0.1 - 43.8 (7.2)" "0.0 - 49.4 (7.8)"
        TCGA-F2-6879         TCGA-F2-6880         TCGA-F2-7273 
  "TMEM184A MUTATED"   "TMEM184A MUTATED" "TMEM184A WILD-TYPE" 
        TCGA-F2-7276         TCGA-F2-A44G         TCGA-F2-A44H 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-FB-A4P5         TCGA-FB-A4P6         TCGA-FB-A545 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-FB-A5VM         TCGA-FB-A78T         TCGA-FB-A7DR 
  "TMEM184A MUTATED" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-FZ-5920         TCGA-FZ-5922         TCGA-FZ-5923 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-H6-8124         TCGA-H6-A45N         TCGA-H8-A6C1 
  "TMEM184A MUTATED" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-HZ-7289         TCGA-HZ-7918         TCGA-HZ-7919 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE"   "TMEM184A MUTATED" 
        TCGA-HZ-7922         TCGA-HZ-7923         TCGA-HZ-7924 
  "TMEM184A MUTATED"   "TMEM184A MUTATED" "TMEM184A WILD-TYPE" 
        TCGA-HZ-7925         TCGA-HZ-7926         TCGA-HZ-8001 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-HZ-8002         TCGA-HZ-8003         TCGA-HZ-8005 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-HZ-8315         TCGA-HZ-8317         TCGA-HZ-8636 
"TMEM184A WILD-TYPE"   "TMEM184A MUTATED"   "TMEM184A MUTATED" 
        TCGA-HZ-8638         TCGA-HZ-A49G         TCGA-HZ-A49H 
  "TMEM184A MUTATED" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-HZ-A4BH         TCGA-HZ-A4BK         TCGA-IB-7644 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-IB-7645         TCGA-IB-7646         TCGA-IB-7647 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE"   "TMEM184A MUTATED" 
        TCGA-IB-7649         TCGA-IB-7651         TCGA-IB-7652 
"TMEM184A WILD-TYPE"   "TMEM184A MUTATED" "TMEM184A WILD-TYPE" 
        TCGA-IB-7885         TCGA-IB-7886         TCGA-IB-7887 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-IB-7888         TCGA-IB-7889         TCGA-IB-7890 
  "TMEM184A MUTATED" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-IB-7891         TCGA-IB-7893         TCGA-IB-7897 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-IB-8126         TCGA-IB-8127         TCGA-IB-A5SO 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-IB-A5SP         TCGA-IB-A5SQ         TCGA-IB-A5SS 
"TMEM184A WILD-TYPE"   "TMEM184A MUTATED" "TMEM184A WILD-TYPE" 
        TCGA-IB-A5ST         TCGA-IB-A6UG         TCGA-LB-A7SX 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-OE-A75W         TCGA-PZ-A5RE         TCGA-Q3-A5QY 
"TMEM184A WILD-TYPE"   "TMEM184A MUTATED" "TMEM184A WILD-TYPE" 
        TCGA-US-A779         TCGA-US-A77E         TCGA-US-A77J 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-F2-6879         TCGA-F2-6880         TCGA-F2-7273 
  "TMEM184A MUTATED"   "TMEM184A MUTATED" "TMEM184A WILD-TYPE" 
        TCGA-F2-7276         TCGA-F2-A44G         TCGA-F2-A44H 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-FB-A4P5         TCGA-FB-A4P6         TCGA-FB-A545 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-FB-A5VM         TCGA-FB-A78T         TCGA-FB-A7DR 
  "TMEM184A MUTATED" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-FZ-5920         TCGA-FZ-5922         TCGA-FZ-5923 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-H6-8124         TCGA-H6-A45N         TCGA-H8-A6C1 
  "TMEM184A MUTATED" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-HZ-7289         TCGA-HZ-7918         TCGA-HZ-7919 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE"   "TMEM184A MUTATED" 
        TCGA-HZ-7922         TCGA-HZ-7923         TCGA-HZ-7924 
  "TMEM184A MUTATED"   "TMEM184A MUTATED" "TMEM184A WILD-TYPE" 
        TCGA-HZ-7925         TCGA-HZ-7926         TCGA-HZ-8001 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-HZ-8002         TCGA-HZ-8003         TCGA-HZ-8005 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-HZ-8315         TCGA-HZ-8317         TCGA-HZ-8636 
"TMEM184A WILD-TYPE"   "TMEM184A MUTATED"   "TMEM184A MUTATED" 
        TCGA-HZ-8638         TCGA-HZ-A49G         TCGA-HZ-A49H 
  "TMEM184A MUTATED" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-HZ-A4BH         TCGA-HZ-A4BK         TCGA-IB-7644 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-IB-7645         TCGA-IB-7646         TCGA-IB-7647 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE"   "TMEM184A MUTATED" 
        TCGA-IB-7649         TCGA-IB-7651         TCGA-IB-7652 
"TMEM184A WILD-TYPE"   "TMEM184A MUTATED" "TMEM184A WILD-TYPE" 
        TCGA-IB-7885         TCGA-IB-7886         TCGA-IB-7887 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-IB-7888         TCGA-IB-7889         TCGA-IB-7890 
  "TMEM184A MUTATED" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-IB-7891         TCGA-IB-7893         TCGA-IB-7897 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-IB-8126         TCGA-IB-8127         TCGA-IB-A5SO 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-IB-A5SP         TCGA-IB-A5SQ         TCGA-IB-A5SS 
"TMEM184A WILD-TYPE"   "TMEM184A MUTATED" "TMEM184A WILD-TYPE" 
        TCGA-IB-A5ST         TCGA-IB-A6UG         TCGA-LB-A7SX 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-OE-A75W         TCGA-PZ-A5RE         TCGA-Q3-A5QY 
"TMEM184A WILD-TYPE"   "TMEM184A MUTATED" "TMEM184A WILD-TYPE" 
        TCGA-US-A779         TCGA-US-A77E         TCGA-US-A77J 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-F2-6879         TCGA-F2-6880         TCGA-F2-7273 
  "TMEM184A MUTATED"   "TMEM184A MUTATED" "TMEM184A WILD-TYPE" 
        TCGA-F2-7276         TCGA-F2-A44G         TCGA-F2-A44H 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-FB-A4P5         TCGA-FB-A4P6         TCGA-FB-A545 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-FB-A5VM         TCGA-FB-A78T         TCGA-FB-A7DR 
  "TMEM184A MUTATED" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-FZ-5920         TCGA-FZ-5922         TCGA-FZ-5923 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-H6-8124         TCGA-H6-A45N         TCGA-H8-A6C1 
  "TMEM184A MUTATED" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-HZ-7289         TCGA-HZ-7918         TCGA-HZ-7919 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE"   "TMEM184A MUTATED" 
        TCGA-HZ-7922         TCGA-HZ-7923         TCGA-HZ-7924 
  "TMEM184A MUTATED"   "TMEM184A MUTATED" "TMEM184A WILD-TYPE" 
        TCGA-HZ-7925         TCGA-HZ-7926         TCGA-HZ-8001 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-HZ-8002         TCGA-HZ-8003         TCGA-HZ-8005 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-HZ-8315         TCGA-HZ-8317         TCGA-HZ-8636 
"TMEM184A WILD-TYPE"   "TMEM184A MUTATED"   "TMEM184A MUTATED" 
        TCGA-HZ-8638         TCGA-HZ-A49G         TCGA-HZ-A49H 
  "TMEM184A MUTATED" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-HZ-A4BH         TCGA-HZ-A4BK         TCGA-IB-7644 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-IB-7645         TCGA-IB-7646         TCGA-IB-7647 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE"   "TMEM184A MUTATED" 
        TCGA-IB-7649         TCGA-IB-7651         TCGA-IB-7652 
"TMEM184A WILD-TYPE"   "TMEM184A MUTATED" "TMEM184A WILD-TYPE" 
        TCGA-IB-7885         TCGA-IB-7886         TCGA-IB-7887 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-IB-7888         TCGA-IB-7889         TCGA-IB-7890 
  "TMEM184A MUTATED" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-IB-7891         TCGA-IB-7893         TCGA-IB-7897 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-IB-8126         TCGA-IB-8127         TCGA-IB-A5SO 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-IB-A5SP         TCGA-IB-A5SQ         TCGA-IB-A5SS 
"TMEM184A WILD-TYPE"   "TMEM184A MUTATED" "TMEM184A WILD-TYPE" 
        TCGA-IB-A5ST         TCGA-IB-A6UG         TCGA-LB-A7SX 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
        TCGA-OE-A75W         TCGA-PZ-A5RE         TCGA-Q3-A5QY 
"TMEM184A WILD-TYPE"   "TMEM184A MUTATED" "TMEM184A WILD-TYPE" 
        TCGA-US-A779         TCGA-US-A77E         TCGA-US-A77J 
"TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" "TMEM184A WILD-TYPE" 
[1] "hr=" "1.5"
D124V2, continuous
                    vv
clus                 STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  TMEM184A MUTATED          1        2         2         9         0        1
  TMEM184A WILD-TYPE        0        2         9        42         2        2
D124V3, multiclass
                    vv
clus                 T1+T2 T3+T4
  TMEM184A MUTATED       3    12
  TMEM184A WILD-TYPE     3    54
D124V4, multiclass
       clus
vv      TMEM184A MUTATED TMEM184A WILD-TYPE
  T1+T2                3                  3
  T3+T4               12                 54
D124V5, binary
                    cls
clus                  0  1
  TMEM184A MUTATED    6  9
  TMEM184A WILD-TYPE 11 45
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  TMEM184A MUTATED      6    9
  TMEM184A WILD-TYPE   11   45
   clus
vv  TMEM184A MUTATED TMEM184A WILD-TYPE
  0                6                 11
  1                9                 45
                    vv
clus                 M0 M1 MX
  TMEM184A MUTATED    9  1  5
  TMEM184A WILD-TYPE 30  2 25
D124V6, multiclass
    clus
vv   TMEM184A MUTATED TMEM184A WILD-TYPE
  M0                9                 30
  M1                1                  2
  MX                5                 25
D124V7, binary
                    cls
clus                  0  1
  TMEM184A MUTATED   11  4
  TMEM184A WILD-TYPE 25 32
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  TMEM184A MUTATED     11    4
  TMEM184A WILD-TYPE   25   32
        clus
vv       TMEM184A MUTATED TMEM184A WILD-TYPE
  FEMALE               11                 25
  MALE                  4                 32
                    vv
clus                 PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  TMEM184A MUTATED                                    13
  TMEM184A WILD-TYPE                                  52
                    vv
clus                 PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  TMEM184A MUTATED                                       0
  TMEM184A WILD-TYPE                                     4
                    vv
clus                 PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  TMEM184A MUTATED                                                  1
  TMEM184A WILD-TYPE                                                1
D124V8, multiclass
                                                  clus
vv                                                 TMEM184A MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                            13
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                           0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                1
                                                  clus
vv                                                 TMEM184A WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                              52
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                             4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                  1
D124V9, continuous
D124V10, continuous
                    vv
clus                 R0 R1 RX
  TMEM184A MUTATED   10  4  0
  TMEM184A WILD-TYPE 32 20  2
D124V11, multiclass
    clus
vv   TMEM184A MUTATED TMEM184A WILD-TYPE
  R0               10                 32
  R1                4                 20
  RX                0                  2
D124V12, continuous

Clustering(125) Variable = BHLHB9 MUTATION ANALYSIS
D125V1, survival
                  sevent
clus2               0  1
  BHLHB9 MUTATED    3  5
  BHLHB9 WILD-TYPE 37 24
  BHLHB9 MUTATED BHLHB9 WILD-TYPE 
               8               61 
  BHLHB9 MUTATED BHLHB9 WILD-TYPE 
               5               24 
$`BHLHB9 MUTATED`
TCGA-F2-A44G TCGA-H6-8124 TCGA-HZ-8005 TCGA-HZ-8636 TCGA-HZ-A4BH TCGA-IB-7646 
        5.03        12.89         3.95         0.16         6.38         4.77 
TCGA-IB-7886 TCGA-IB-7893 
        4.04         3.85 

$`BHLHB9 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44H TCGA-FB-A4P5 
       10.98         9.70        11.84         7.10        19.27         0.13 
TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR TCGA-FZ-5920 
       11.93        12.66         2.47         0.03         5.46         2.01 
TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7289 TCGA-HZ-7918 
       36.20        20.81         7.66        13.02         7.89         0.92 
TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 
        0.66         0.13         0.26        12.13        11.87         0.26 
TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8638 
        0.62         0.79         0.69         0.92         0.53         2.99 
TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7647 
        0.76         0.95         1.51        11.41        49.38        21.90 
TCGA-IB-7649 TCGA-IB-7651 TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7887 TCGA-IB-7888 
       15.35        19.82        15.65        27.98         3.62        43.79 
TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-8127 
       15.81        19.66        16.04        15.98         0.56        17.16 
TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG 
       10.82         9.86         7.20        15.12         0.26         1.35 
TCGA-LB-A7SX TCGA-OE-A75W TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E 
        4.18         3.62         8.12        13.68        16.80        14.14 
TCGA-US-A77J 
       18.67 

  BHLHB9 MUTATED BHLHB9 WILD-TYPE 
            0.16             0.03 
  BHLHB9 MUTATED BHLHB9 WILD-TYPE 
           12.89            49.38 
  BHLHB9 MUTATED BHLHB9 WILD-TYPE 
           4.405            9.700 
[1] "0.2 - 12.9 (4.4)" "0.0 - 49.4 (9.7)"
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
"BHLHB9 WILD-TYPE" "BHLHB9 WILD-TYPE" "BHLHB9 WILD-TYPE" "BHLHB9 WILD-TYPE" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
  "BHLHB9 MUTATED" "BHLHB9 WILD-TYPE" "BHLHB9 WILD-TYPE" "BHLHB9 WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
"BHLHB9 WILD-TYPE" "BHLHB9 WILD-TYPE" "BHLHB9 WILD-TYPE" "BHLHB9 WILD-TYPE" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"BHLHB9 WILD-TYPE" "BHLHB9 WILD-TYPE" "BHLHB9 WILD-TYPE"   "BHLHB9 MUTATED" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
"BHLHB9 WILD-TYPE" "BHLHB9 WILD-TYPE" "BHLHB9 WILD-TYPE" "BHLHB9 WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
"BHLHB9 WILD-TYPE" "BHLHB9 WILD-TYPE" "BHLHB9 WILD-TYPE" "BHLHB9 WILD-TYPE" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"BHLHB9 WILD-TYPE" "BHLHB9 WILD-TYPE" "BHLHB9 WILD-TYPE" "BHLHB9 WILD-TYPE" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
"BHLHB9 WILD-TYPE"   "BHLHB9 MUTATED" "BHLHB9 WILD-TYPE" "BHLHB9 WILD-TYPE" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
  "BHLHB9 MUTATED" "BHLHB9 WILD-TYPE" "BHLHB9 WILD-TYPE" "BHLHB9 WILD-TYPE" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
  "BHLHB9 MUTATED" "BHLHB9 WILD-TYPE" "BHLHB9 WILD-TYPE" "BHLHB9 WILD-TYPE" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
  "BHLHB9 MUTATED" "BHLHB9 WILD-TYPE" "BHLHB9 WILD-TYPE" "BHLHB9 WILD-TYPE" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
"BHLHB9 WILD-TYPE" "BHLHB9 WILD-TYPE"   "BHLHB9 MUTATED" "BHLHB9 WILD-TYPE" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
"BHLHB9 WILD-TYPE" "BHLHB9 WILD-TYPE" "BHLHB9 WILD-TYPE" "BHLHB9 WILD-TYPE" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
  "BHLHB9 MUTATED" "BHLHB9 WILD-TYPE" "BHLHB9 WILD-TYPE" "BHLHB9 WILD-TYPE" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"BHLHB9 WILD-TYPE" "BHLHB9 WILD-TYPE" "BHLHB9 WILD-TYPE" "BHLHB9 WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"BHLHB9 WILD-TYPE" "BHLHB9 WILD-TYPE" "BHLHB9 WILD-TYPE" "BHLHB9 WILD-TYPE" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
"BHLHB9 WILD-TYPE" "BHLHB9 WILD-TYPE" "BHLHB9 WILD-TYPE" "BHLHB9 WILD-TYPE" 
      TCGA-US-A77J 
"BHLHB9 WILD-TYPE" 
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
"BHLHB9 WILD-TYPE" "BHLHB9 WILD-TYPE" "BHLHB9 WILD-TYPE" "BHLHB9 WILD-TYPE" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
  "BHLHB9 MUTATED" "BHLHB9 WILD-TYPE" "BHLHB9 WILD-TYPE" "BHLHB9 WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
"BHLHB9 WILD-TYPE" "BHLHB9 WILD-TYPE" "BHLHB9 WILD-TYPE" "BHLHB9 WILD-TYPE" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"BHLHB9 WILD-TYPE" "BHLHB9 WILD-TYPE" "BHLHB9 WILD-TYPE"   "BHLHB9 MUTATED" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
"BHLHB9 WILD-TYPE" "BHLHB9 WILD-TYPE" "BHLHB9 WILD-TYPE" "BHLHB9 WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
"BHLHB9 WILD-TYPE" "BHLHB9 WILD-TYPE" "BHLHB9 WILD-TYPE" "BHLHB9 WILD-TYPE" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"BHLHB9 WILD-TYPE" "BHLHB9 WILD-TYPE" "BHLHB9 WILD-TYPE" "BHLHB9 WILD-TYPE" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
"BHLHB9 WILD-TYPE"   "BHLHB9 MUTATED" "BHLHB9 WILD-TYPE" "BHLHB9 WILD-TYPE" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
  "BHLHB9 MUTATED" "BHLHB9 WILD-TYPE" "BHLHB9 WILD-TYPE" "BHLHB9 WILD-TYPE" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
  "BHLHB9 MUTATED" "BHLHB9 WILD-TYPE" "BHLHB9 WILD-TYPE" "BHLHB9 WILD-TYPE" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
  "BHLHB9 MUTATED" "BHLHB9 WILD-TYPE" "BHLHB9 WILD-TYPE" "BHLHB9 WILD-TYPE" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
"BHLHB9 WILD-TYPE" "BHLHB9 WILD-TYPE"   "BHLHB9 MUTATED" "BHLHB9 WILD-TYPE" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
"BHLHB9 WILD-TYPE" "BHLHB9 WILD-TYPE" "BHLHB9 WILD-TYPE" "BHLHB9 WILD-TYPE" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
  "BHLHB9 MUTATED" "BHLHB9 WILD-TYPE" "BHLHB9 WILD-TYPE" "BHLHB9 WILD-TYPE" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"BHLHB9 WILD-TYPE" "BHLHB9 WILD-TYPE" "BHLHB9 WILD-TYPE" "BHLHB9 WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"BHLHB9 WILD-TYPE" "BHLHB9 WILD-TYPE" "BHLHB9 WILD-TYPE" "BHLHB9 WILD-TYPE" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
"BHLHB9 WILD-TYPE" "BHLHB9 WILD-TYPE" "BHLHB9 WILD-TYPE" "BHLHB9 WILD-TYPE" 
      TCGA-US-A77J 
"BHLHB9 WILD-TYPE" 
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
"BHLHB9 WILD-TYPE" "BHLHB9 WILD-TYPE" "BHLHB9 WILD-TYPE" "BHLHB9 WILD-TYPE" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
  "BHLHB9 MUTATED" "BHLHB9 WILD-TYPE" "BHLHB9 WILD-TYPE" "BHLHB9 WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
"BHLHB9 WILD-TYPE" "BHLHB9 WILD-TYPE" "BHLHB9 WILD-TYPE" "BHLHB9 WILD-TYPE" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"BHLHB9 WILD-TYPE" "BHLHB9 WILD-TYPE" "BHLHB9 WILD-TYPE"   "BHLHB9 MUTATED" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
"BHLHB9 WILD-TYPE" "BHLHB9 WILD-TYPE" "BHLHB9 WILD-TYPE" "BHLHB9 WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
"BHLHB9 WILD-TYPE" "BHLHB9 WILD-TYPE" "BHLHB9 WILD-TYPE" "BHLHB9 WILD-TYPE" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"BHLHB9 WILD-TYPE" "BHLHB9 WILD-TYPE" "BHLHB9 WILD-TYPE" "BHLHB9 WILD-TYPE" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
"BHLHB9 WILD-TYPE"   "BHLHB9 MUTATED" "BHLHB9 WILD-TYPE" "BHLHB9 WILD-TYPE" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
  "BHLHB9 MUTATED" "BHLHB9 WILD-TYPE" "BHLHB9 WILD-TYPE" "BHLHB9 WILD-TYPE" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
  "BHLHB9 MUTATED" "BHLHB9 WILD-TYPE" "BHLHB9 WILD-TYPE" "BHLHB9 WILD-TYPE" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
  "BHLHB9 MUTATED" "BHLHB9 WILD-TYPE" "BHLHB9 WILD-TYPE" "BHLHB9 WILD-TYPE" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
"BHLHB9 WILD-TYPE" "BHLHB9 WILD-TYPE"   "BHLHB9 MUTATED" "BHLHB9 WILD-TYPE" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
"BHLHB9 WILD-TYPE" "BHLHB9 WILD-TYPE" "BHLHB9 WILD-TYPE" "BHLHB9 WILD-TYPE" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
  "BHLHB9 MUTATED" "BHLHB9 WILD-TYPE" "BHLHB9 WILD-TYPE" "BHLHB9 WILD-TYPE" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"BHLHB9 WILD-TYPE" "BHLHB9 WILD-TYPE" "BHLHB9 WILD-TYPE" "BHLHB9 WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"BHLHB9 WILD-TYPE" "BHLHB9 WILD-TYPE" "BHLHB9 WILD-TYPE" "BHLHB9 WILD-TYPE" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
"BHLHB9 WILD-TYPE" "BHLHB9 WILD-TYPE" "BHLHB9 WILD-TYPE" "BHLHB9 WILD-TYPE" 
      TCGA-US-A77J 
"BHLHB9 WILD-TYPE" 
[1] "hr=" "5.8"
D125V2, continuous
                  vv
clus               STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  BHLHB9 MUTATED          0        0         1         6         0        1
  BHLHB9 WILD-TYPE        1        4        10        45         2        2
D125V3, multiclass
                  vv
clus               T1+T2 T3+T4
  BHLHB9 MUTATED       0     8
  BHLHB9 WILD-TYPE     6    58
D125V4, multiclass
       clus
vv      BHLHB9 MUTATED BHLHB9 WILD-TYPE
  T1+T2              0                6
  T3+T4              8               58
D125V5, binary
                  cls
clus                0  1
  BHLHB9 MUTATED    2  6
  BHLHB9 WILD-TYPE 15 48
[1] "tbl2"
                  cls
clus               [,1] [,2]
  BHLHB9 MUTATED      2    6
  BHLHB9 WILD-TYPE   15   48
   clus
vv  BHLHB9 MUTATED BHLHB9 WILD-TYPE
  0              2               15
  1              6               48
                  vv
clus               M0 M1 MX
  BHLHB9 MUTATED    5  1  2
  BHLHB9 WILD-TYPE 34  2 28
D125V6, multiclass
    clus
vv   BHLHB9 MUTATED BHLHB9 WILD-TYPE
  M0              5               34
  M1              1                2
  MX              2               28
D125V7, binary
                  cls
clus                0  1
  BHLHB9 MUTATED    3  5
  BHLHB9 WILD-TYPE 33 31
[1] "tbl2"
                  cls
clus               [,1] [,2]
  BHLHB9 MUTATED      3    5
  BHLHB9 WILD-TYPE   33   31
        clus
vv       BHLHB9 MUTATED BHLHB9 WILD-TYPE
  FEMALE              3               33
  MALE                5               31
                  vv
clus               PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  BHLHB9 MUTATED                                     8
  BHLHB9 WILD-TYPE                                  57
                  vv
clus               PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  BHLHB9 MUTATED                                       0
  BHLHB9 WILD-TYPE                                     4
                  vv
clus               PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  BHLHB9 MUTATED                                                  0
  BHLHB9 WILD-TYPE                                                2
D125V8, multiclass
                                                  clus
vv                                                 BHLHB9 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                           8
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                         0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA              0
                                                  clus
vv                                                 BHLHB9 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                            57
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                           4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                2
D125V9, continuous
[1] "Remove cluster labels:" "BHLHB9 MUTATED"        
clus
  BHLHB9 MUTATED BHLHB9 WILD-TYPE 
               2               20 
      TCGA-F2-6880       TCGA-FB-A4P5       TCGA-FB-A4P6       TCGA-FB-A5VM 
"BHLHB9 WILD-TYPE" "BHLHB9 WILD-TYPE" "BHLHB9 WILD-TYPE" "BHLHB9 WILD-TYPE" 
      TCGA-FB-A78T       TCGA-FB-A7DR       TCGA-H6-A45N       TCGA-H8-A6C1 
"BHLHB9 WILD-TYPE" "BHLHB9 WILD-TYPE" "BHLHB9 WILD-TYPE" "BHLHB9 WILD-TYPE" 
      TCGA-IB-7644       TCGA-IB-7649       TCGA-IB-7651       TCGA-IB-7885 
"BHLHB9 WILD-TYPE" "BHLHB9 WILD-TYPE" "BHLHB9 WILD-TYPE" "BHLHB9 WILD-TYPE" 
      TCGA-IB-7887       TCGA-IB-7891       TCGA-IB-8126       TCGA-IB-8127 
"BHLHB9 WILD-TYPE" "BHLHB9 WILD-TYPE" "BHLHB9 WILD-TYPE" "BHLHB9 WILD-TYPE" 
      TCGA-IB-A5SS       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"BHLHB9 WILD-TYPE" "BHLHB9 WILD-TYPE" "BHLHB9 WILD-TYPE" "BHLHB9 WILD-TYPE" 
D125V10, continuous
[1] "Remove cluster labels:" "BHLHB9 MUTATED"        
clus
  BHLHB9 MUTATED BHLHB9 WILD-TYPE 
               2               17 
      TCGA-FB-A4P5       TCGA-FB-A4P6       TCGA-FB-A5VM       TCGA-FB-A78T 
"BHLHB9 WILD-TYPE" "BHLHB9 WILD-TYPE" "BHLHB9 WILD-TYPE" "BHLHB9 WILD-TYPE" 
      TCGA-FB-A7DR       TCGA-H8-A6C1       TCGA-IB-7644       TCGA-IB-7649 
"BHLHB9 WILD-TYPE" "BHLHB9 WILD-TYPE" "BHLHB9 WILD-TYPE" "BHLHB9 WILD-TYPE" 
      TCGA-IB-7651       TCGA-IB-7885       TCGA-IB-7891       TCGA-IB-8126 
"BHLHB9 WILD-TYPE" "BHLHB9 WILD-TYPE" "BHLHB9 WILD-TYPE" "BHLHB9 WILD-TYPE" 
      TCGA-IB-8127       TCGA-IB-A5SS       TCGA-IB-A6UG       TCGA-LB-A7SX 
"BHLHB9 WILD-TYPE" "BHLHB9 WILD-TYPE" "BHLHB9 WILD-TYPE" "BHLHB9 WILD-TYPE" 
      TCGA-OE-A75W 
"BHLHB9 WILD-TYPE" 
                  vv
clus               R0 R1 RX
  BHLHB9 MUTATED    2  6  0
  BHLHB9 WILD-TYPE 40 18  2
D125V11, multiclass
    clus
vv   BHLHB9 MUTATED BHLHB9 WILD-TYPE
  R0              2               40
  R1              6               18
  RX              0                2
D125V12, continuous

Clustering(126) Variable = MAP3K7 MUTATION ANALYSIS
D126V1, survival
                  sevent
clus2               0  1
  MAP3K7 MUTATED    4  5
  MAP3K7 WILD-TYPE 36 24
  MAP3K7 MUTATED MAP3K7 WILD-TYPE 
               9               60 
  MAP3K7 MUTATED MAP3K7 WILD-TYPE 
               5               24 
$`MAP3K7 MUTATED`
TCGA-FB-A545 TCGA-HZ-7922 TCGA-IB-7649 TCGA-IB-7651 TCGA-IB-7889 TCGA-IB-7897 
       12.66         0.13        15.35        19.82        15.81        15.98 
TCGA-IB-8126 TCGA-IB-8127 TCGA-US-A77J 
        0.56        17.16        18.67 

$`MAP3K7 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P5 TCGA-FB-A4P6 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR TCGA-FZ-5920 
        0.13        11.93         2.47         0.03         5.46         2.01 
TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7289 
       36.20        20.81        12.89         7.66        13.02         7.89 
TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 
        0.92         0.66         0.26        12.13        11.87         0.26 
TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 
        0.62         0.79         0.69         3.95         0.92         0.53 
TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK 
        0.16         2.99         0.76         0.95         6.38         1.51 
TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7652 TCGA-IB-7885 
       11.41        49.38         4.77        21.90        15.65        27.98 
TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-7893 
        4.04         3.62        43.79        19.66        16.04         3.85 
TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG 
       10.82         9.86         7.20        15.12         0.26         1.35 
TCGA-LB-A7SX TCGA-OE-A75W TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E 
        4.18         3.62         8.12        13.68        16.80        14.14 

  MAP3K7 MUTATED MAP3K7 WILD-TYPE 
            0.13             0.03 
  MAP3K7 MUTATED MAP3K7 WILD-TYPE 
           19.82            49.38 
  MAP3K7 MUTATED MAP3K7 WILD-TYPE 
           15.81             6.74 
[1] "0.1 - 19.8 (15.8)" "0.0 - 49.4 (6.7)" 
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
"MAP3K7 WILD-TYPE" "MAP3K7 WILD-TYPE" "MAP3K7 WILD-TYPE" "MAP3K7 WILD-TYPE" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"MAP3K7 WILD-TYPE" "MAP3K7 WILD-TYPE" "MAP3K7 WILD-TYPE" "MAP3K7 WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
  "MAP3K7 MUTATED" "MAP3K7 WILD-TYPE" "MAP3K7 WILD-TYPE" "MAP3K7 WILD-TYPE" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"MAP3K7 WILD-TYPE" "MAP3K7 WILD-TYPE" "MAP3K7 WILD-TYPE" "MAP3K7 WILD-TYPE" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
"MAP3K7 WILD-TYPE" "MAP3K7 WILD-TYPE" "MAP3K7 WILD-TYPE" "MAP3K7 WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
"MAP3K7 WILD-TYPE"   "MAP3K7 MUTATED" "MAP3K7 WILD-TYPE" "MAP3K7 WILD-TYPE" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"MAP3K7 WILD-TYPE" "MAP3K7 WILD-TYPE" "MAP3K7 WILD-TYPE" "MAP3K7 WILD-TYPE" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
"MAP3K7 WILD-TYPE" "MAP3K7 WILD-TYPE" "MAP3K7 WILD-TYPE" "MAP3K7 WILD-TYPE" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
"MAP3K7 WILD-TYPE" "MAP3K7 WILD-TYPE" "MAP3K7 WILD-TYPE" "MAP3K7 WILD-TYPE" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
"MAP3K7 WILD-TYPE" "MAP3K7 WILD-TYPE" "MAP3K7 WILD-TYPE" "MAP3K7 WILD-TYPE" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
"MAP3K7 WILD-TYPE" "MAP3K7 WILD-TYPE"   "MAP3K7 MUTATED"   "MAP3K7 MUTATED" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
"MAP3K7 WILD-TYPE" "MAP3K7 WILD-TYPE" "MAP3K7 WILD-TYPE" "MAP3K7 WILD-TYPE" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
"MAP3K7 WILD-TYPE"   "MAP3K7 MUTATED" "MAP3K7 WILD-TYPE" "MAP3K7 WILD-TYPE" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
"MAP3K7 WILD-TYPE"   "MAP3K7 MUTATED"   "MAP3K7 MUTATED"   "MAP3K7 MUTATED" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"MAP3K7 WILD-TYPE" "MAP3K7 WILD-TYPE" "MAP3K7 WILD-TYPE" "MAP3K7 WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"MAP3K7 WILD-TYPE" "MAP3K7 WILD-TYPE" "MAP3K7 WILD-TYPE" "MAP3K7 WILD-TYPE" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
"MAP3K7 WILD-TYPE" "MAP3K7 WILD-TYPE" "MAP3K7 WILD-TYPE" "MAP3K7 WILD-TYPE" 
      TCGA-US-A77J 
  "MAP3K7 MUTATED" 
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
"MAP3K7 WILD-TYPE" "MAP3K7 WILD-TYPE" "MAP3K7 WILD-TYPE" "MAP3K7 WILD-TYPE" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"MAP3K7 WILD-TYPE" "MAP3K7 WILD-TYPE" "MAP3K7 WILD-TYPE" "MAP3K7 WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
  "MAP3K7 MUTATED" "MAP3K7 WILD-TYPE" "MAP3K7 WILD-TYPE" "MAP3K7 WILD-TYPE" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"MAP3K7 WILD-TYPE" "MAP3K7 WILD-TYPE" "MAP3K7 WILD-TYPE" "MAP3K7 WILD-TYPE" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
"MAP3K7 WILD-TYPE" "MAP3K7 WILD-TYPE" "MAP3K7 WILD-TYPE" "MAP3K7 WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
"MAP3K7 WILD-TYPE"   "MAP3K7 MUTATED" "MAP3K7 WILD-TYPE" "MAP3K7 WILD-TYPE" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"MAP3K7 WILD-TYPE" "MAP3K7 WILD-TYPE" "MAP3K7 WILD-TYPE" "MAP3K7 WILD-TYPE" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
"MAP3K7 WILD-TYPE" "MAP3K7 WILD-TYPE" "MAP3K7 WILD-TYPE" "MAP3K7 WILD-TYPE" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
"MAP3K7 WILD-TYPE" "MAP3K7 WILD-TYPE" "MAP3K7 WILD-TYPE" "MAP3K7 WILD-TYPE" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
"MAP3K7 WILD-TYPE" "MAP3K7 WILD-TYPE" "MAP3K7 WILD-TYPE" "MAP3K7 WILD-TYPE" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
"MAP3K7 WILD-TYPE" "MAP3K7 WILD-TYPE"   "MAP3K7 MUTATED"   "MAP3K7 MUTATED" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
"MAP3K7 WILD-TYPE" "MAP3K7 WILD-TYPE" "MAP3K7 WILD-TYPE" "MAP3K7 WILD-TYPE" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
"MAP3K7 WILD-TYPE"   "MAP3K7 MUTATED" "MAP3K7 WILD-TYPE" "MAP3K7 WILD-TYPE" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
"MAP3K7 WILD-TYPE"   "MAP3K7 MUTATED"   "MAP3K7 MUTATED"   "MAP3K7 MUTATED" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"MAP3K7 WILD-TYPE" "MAP3K7 WILD-TYPE" "MAP3K7 WILD-TYPE" "MAP3K7 WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"MAP3K7 WILD-TYPE" "MAP3K7 WILD-TYPE" "MAP3K7 WILD-TYPE" "MAP3K7 WILD-TYPE" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
"MAP3K7 WILD-TYPE" "MAP3K7 WILD-TYPE" "MAP3K7 WILD-TYPE" "MAP3K7 WILD-TYPE" 
      TCGA-US-A77J 
  "MAP3K7 MUTATED" 
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
"MAP3K7 WILD-TYPE" "MAP3K7 WILD-TYPE" "MAP3K7 WILD-TYPE" "MAP3K7 WILD-TYPE" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"MAP3K7 WILD-TYPE" "MAP3K7 WILD-TYPE" "MAP3K7 WILD-TYPE" "MAP3K7 WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
  "MAP3K7 MUTATED" "MAP3K7 WILD-TYPE" "MAP3K7 WILD-TYPE" "MAP3K7 WILD-TYPE" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"MAP3K7 WILD-TYPE" "MAP3K7 WILD-TYPE" "MAP3K7 WILD-TYPE" "MAP3K7 WILD-TYPE" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
"MAP3K7 WILD-TYPE" "MAP3K7 WILD-TYPE" "MAP3K7 WILD-TYPE" "MAP3K7 WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
"MAP3K7 WILD-TYPE"   "MAP3K7 MUTATED" "MAP3K7 WILD-TYPE" "MAP3K7 WILD-TYPE" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"MAP3K7 WILD-TYPE" "MAP3K7 WILD-TYPE" "MAP3K7 WILD-TYPE" "MAP3K7 WILD-TYPE" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
"MAP3K7 WILD-TYPE" "MAP3K7 WILD-TYPE" "MAP3K7 WILD-TYPE" "MAP3K7 WILD-TYPE" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
"MAP3K7 WILD-TYPE" "MAP3K7 WILD-TYPE" "MAP3K7 WILD-TYPE" "MAP3K7 WILD-TYPE" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
"MAP3K7 WILD-TYPE" "MAP3K7 WILD-TYPE" "MAP3K7 WILD-TYPE" "MAP3K7 WILD-TYPE" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
"MAP3K7 WILD-TYPE" "MAP3K7 WILD-TYPE"   "MAP3K7 MUTATED"   "MAP3K7 MUTATED" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
"MAP3K7 WILD-TYPE" "MAP3K7 WILD-TYPE" "MAP3K7 WILD-TYPE" "MAP3K7 WILD-TYPE" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
"MAP3K7 WILD-TYPE"   "MAP3K7 MUTATED" "MAP3K7 WILD-TYPE" "MAP3K7 WILD-TYPE" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
"MAP3K7 WILD-TYPE"   "MAP3K7 MUTATED"   "MAP3K7 MUTATED"   "MAP3K7 MUTATED" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"MAP3K7 WILD-TYPE" "MAP3K7 WILD-TYPE" "MAP3K7 WILD-TYPE" "MAP3K7 WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"MAP3K7 WILD-TYPE" "MAP3K7 WILD-TYPE" "MAP3K7 WILD-TYPE" "MAP3K7 WILD-TYPE" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
"MAP3K7 WILD-TYPE" "MAP3K7 WILD-TYPE" "MAP3K7 WILD-TYPE" "MAP3K7 WILD-TYPE" 
      TCGA-US-A77J 
  "MAP3K7 MUTATED" 
[1] "hr=" "1"  
D126V2, continuous
                  vv
clus               STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  MAP3K7 MUTATED          0        0         0         8         1        0
  MAP3K7 WILD-TYPE        1        4        11        43         1        3
D126V3, multiclass
                  vv
clus               T1+T2 T3+T4
  MAP3K7 MUTATED       0     9
  MAP3K7 WILD-TYPE     6    57
D126V4, multiclass
       clus
vv      MAP3K7 MUTATED MAP3K7 WILD-TYPE
  T1+T2              0                6
  T3+T4              9               57
D126V5, binary
                  cls
clus                0  1
  MAP3K7 MUTATED    0  9
  MAP3K7 WILD-TYPE 17 45
[1] "tbl2"
                  cls
clus               [,1] [,2]
  MAP3K7 MUTATED      0    9
  MAP3K7 WILD-TYPE   17   45
   clus
vv  MAP3K7 MUTATED MAP3K7 WILD-TYPE
  0              0               17
  1              9               45
                  vv
clus               M0 M1 MX
  MAP3K7 MUTATED    7  0  2
  MAP3K7 WILD-TYPE 32  3 28
D126V6, multiclass
    clus
vv   MAP3K7 MUTATED MAP3K7 WILD-TYPE
  M0              7               32
  M1              0                3
  MX              2               28
D126V7, binary
                  cls
clus                0  1
  MAP3K7 MUTATED    8  1
  MAP3K7 WILD-TYPE 28 35
[1] "tbl2"
                  cls
clus               [,1] [,2]
  MAP3K7 MUTATED      8    1
  MAP3K7 WILD-TYPE   28   35
        clus
vv       MAP3K7 MUTATED MAP3K7 WILD-TYPE
  FEMALE              8               28
  MALE                1               35
                  vv
clus               PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  MAP3K7 MUTATED                                     9
  MAP3K7 WILD-TYPE                                  56
                  vv
clus               PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  MAP3K7 MUTATED                                       0
  MAP3K7 WILD-TYPE                                     4
                  vv
clus               PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  MAP3K7 MUTATED                                                  0
  MAP3K7 WILD-TYPE                                                2
D126V8, multiclass
                                                  clus
vv                                                 MAP3K7 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                           9
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                         0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA              0
                                                  clus
vv                                                 MAP3K7 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                            56
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                           4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                2
D126V9, continuous
D126V10, continuous
                  vv
clus               R0 R1 RX
  MAP3K7 MUTATED    5  3  0
  MAP3K7 WILD-TYPE 37 21  2
D126V11, multiclass
    clus
vv   MAP3K7 MUTATED MAP3K7 WILD-TYPE
  R0              5               37
  R1              3               21
  RX              0                2
D126V12, continuous

Clustering(127) Variable = EME2 MUTATION ANALYSIS
D127V1, survival
                sevent
clus2             0  1
  EME2 MUTATED    6  3
  EME2 WILD-TYPE 34 26
  EME2 MUTATED EME2 WILD-TYPE 
             9             60 
  EME2 MUTATED EME2 WILD-TYPE 
             3             26 
$`EME2 MUTATED`
TCGA-FB-A4P6 TCGA-H6-A45N TCGA-HZ-8002 TCGA-HZ-A49G TCGA-HZ-A4BK TCGA-IB-7651 
       11.93         7.66         0.79         0.76         1.51        19.82 
TCGA-IB-7885 TCGA-IB-7897 TCGA-IB-A5SO 
       27.98        15.98        10.82 

$`EME2 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P5 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR TCGA-FZ-5920 
        0.13        12.66         2.47         0.03         5.46         2.01 
TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 TCGA-H8-A6C1 TCGA-HZ-7289 TCGA-HZ-7918 
       36.20        20.81        12.89        13.02         7.89         0.92 
TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 
        0.66         0.13         0.26        12.13        11.87         0.26 
TCGA-HZ-8001 TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8636 
        0.62         0.69         3.95         0.92         0.53         0.16 
TCGA-HZ-8638 TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7646 
        2.99         0.95         6.38        11.41        49.38         4.77 
TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7652 TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7888 
       21.90        15.35        15.65         4.04         3.62        43.79 
TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-8126 TCGA-IB-8127 
       15.81        19.66        16.04         3.85         0.56        17.16 
TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX 
        9.86         7.20        15.12         0.26         1.35         4.18 
TCGA-OE-A75W TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
        3.62         8.12        13.68        16.80        14.14        18.67 

  EME2 MUTATED EME2 WILD-TYPE 
          0.76           0.03 
  EME2 MUTATED EME2 WILD-TYPE 
         27.98          49.38 
  EME2 MUTATED EME2 WILD-TYPE 
         10.82           7.15 
[1] "0.8 - 28.0 (10.8)" "0.0 - 49.4 (7.2)" 
    TCGA-F2-6879     TCGA-F2-6880     TCGA-F2-7273     TCGA-F2-7276 
"EME2 WILD-TYPE" "EME2 WILD-TYPE" "EME2 WILD-TYPE" "EME2 WILD-TYPE" 
    TCGA-F2-A44G     TCGA-F2-A44H     TCGA-FB-A4P5     TCGA-FB-A4P6 
"EME2 WILD-TYPE" "EME2 WILD-TYPE" "EME2 WILD-TYPE"   "EME2 MUTATED" 
    TCGA-FB-A545     TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-FB-A7DR 
"EME2 WILD-TYPE" "EME2 WILD-TYPE" "EME2 WILD-TYPE" "EME2 WILD-TYPE" 
    TCGA-FZ-5920     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-H6-8124 
"EME2 WILD-TYPE" "EME2 WILD-TYPE" "EME2 WILD-TYPE" "EME2 WILD-TYPE" 
    TCGA-H6-A45N     TCGA-H8-A6C1     TCGA-HZ-7289     TCGA-HZ-7918 
  "EME2 MUTATED" "EME2 WILD-TYPE" "EME2 WILD-TYPE" "EME2 WILD-TYPE" 
    TCGA-HZ-7919     TCGA-HZ-7922     TCGA-HZ-7923     TCGA-HZ-7924 
"EME2 WILD-TYPE" "EME2 WILD-TYPE" "EME2 WILD-TYPE" "EME2 WILD-TYPE" 
    TCGA-HZ-7925     TCGA-HZ-7926     TCGA-HZ-8001     TCGA-HZ-8002 
"EME2 WILD-TYPE" "EME2 WILD-TYPE" "EME2 WILD-TYPE"   "EME2 MUTATED" 
    TCGA-HZ-8003     TCGA-HZ-8005     TCGA-HZ-8315     TCGA-HZ-8317 
"EME2 WILD-TYPE" "EME2 WILD-TYPE" "EME2 WILD-TYPE" "EME2 WILD-TYPE" 
    TCGA-HZ-8636     TCGA-HZ-8638     TCGA-HZ-A49G     TCGA-HZ-A49H 
"EME2 WILD-TYPE" "EME2 WILD-TYPE"   "EME2 MUTATED" "EME2 WILD-TYPE" 
    TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-IB-7644     TCGA-IB-7645 
"EME2 WILD-TYPE"   "EME2 MUTATED" "EME2 WILD-TYPE" "EME2 WILD-TYPE" 
    TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7651 
"EME2 WILD-TYPE" "EME2 WILD-TYPE" "EME2 WILD-TYPE"   "EME2 MUTATED" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887 
"EME2 WILD-TYPE"   "EME2 MUTATED" "EME2 WILD-TYPE" "EME2 WILD-TYPE" 
    TCGA-IB-7888     TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891 
"EME2 WILD-TYPE" "EME2 WILD-TYPE" "EME2 WILD-TYPE" "EME2 WILD-TYPE" 
    TCGA-IB-7893     TCGA-IB-7897     TCGA-IB-8126     TCGA-IB-8127 
"EME2 WILD-TYPE"   "EME2 MUTATED" "EME2 WILD-TYPE" "EME2 WILD-TYPE" 
    TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS 
  "EME2 MUTATED" "EME2 WILD-TYPE" "EME2 WILD-TYPE" "EME2 WILD-TYPE" 
    TCGA-IB-A5ST     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
"EME2 WILD-TYPE" "EME2 WILD-TYPE" "EME2 WILD-TYPE" "EME2 WILD-TYPE" 
    TCGA-PZ-A5RE     TCGA-Q3-A5QY     TCGA-US-A779     TCGA-US-A77E 
"EME2 WILD-TYPE" "EME2 WILD-TYPE" "EME2 WILD-TYPE" "EME2 WILD-TYPE" 
    TCGA-US-A77J 
"EME2 WILD-TYPE" 
    TCGA-F2-6879     TCGA-F2-6880     TCGA-F2-7273     TCGA-F2-7276 
"EME2 WILD-TYPE" "EME2 WILD-TYPE" "EME2 WILD-TYPE" "EME2 WILD-TYPE" 
    TCGA-F2-A44G     TCGA-F2-A44H     TCGA-FB-A4P5     TCGA-FB-A4P6 
"EME2 WILD-TYPE" "EME2 WILD-TYPE" "EME2 WILD-TYPE"   "EME2 MUTATED" 
    TCGA-FB-A545     TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-FB-A7DR 
"EME2 WILD-TYPE" "EME2 WILD-TYPE" "EME2 WILD-TYPE" "EME2 WILD-TYPE" 
    TCGA-FZ-5920     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-H6-8124 
"EME2 WILD-TYPE" "EME2 WILD-TYPE" "EME2 WILD-TYPE" "EME2 WILD-TYPE" 
    TCGA-H6-A45N     TCGA-H8-A6C1     TCGA-HZ-7289     TCGA-HZ-7918 
  "EME2 MUTATED" "EME2 WILD-TYPE" "EME2 WILD-TYPE" "EME2 WILD-TYPE" 
    TCGA-HZ-7919     TCGA-HZ-7922     TCGA-HZ-7923     TCGA-HZ-7924 
"EME2 WILD-TYPE" "EME2 WILD-TYPE" "EME2 WILD-TYPE" "EME2 WILD-TYPE" 
    TCGA-HZ-7925     TCGA-HZ-7926     TCGA-HZ-8001     TCGA-HZ-8002 
"EME2 WILD-TYPE" "EME2 WILD-TYPE" "EME2 WILD-TYPE"   "EME2 MUTATED" 
    TCGA-HZ-8003     TCGA-HZ-8005     TCGA-HZ-8315     TCGA-HZ-8317 
"EME2 WILD-TYPE" "EME2 WILD-TYPE" "EME2 WILD-TYPE" "EME2 WILD-TYPE" 
    TCGA-HZ-8636     TCGA-HZ-8638     TCGA-HZ-A49G     TCGA-HZ-A49H 
"EME2 WILD-TYPE" "EME2 WILD-TYPE"   "EME2 MUTATED" "EME2 WILD-TYPE" 
    TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-IB-7644     TCGA-IB-7645 
"EME2 WILD-TYPE"   "EME2 MUTATED" "EME2 WILD-TYPE" "EME2 WILD-TYPE" 
    TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7651 
"EME2 WILD-TYPE" "EME2 WILD-TYPE" "EME2 WILD-TYPE"   "EME2 MUTATED" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887 
"EME2 WILD-TYPE"   "EME2 MUTATED" "EME2 WILD-TYPE" "EME2 WILD-TYPE" 
    TCGA-IB-7888     TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891 
"EME2 WILD-TYPE" "EME2 WILD-TYPE" "EME2 WILD-TYPE" "EME2 WILD-TYPE" 
    TCGA-IB-7893     TCGA-IB-7897     TCGA-IB-8126     TCGA-IB-8127 
"EME2 WILD-TYPE"   "EME2 MUTATED" "EME2 WILD-TYPE" "EME2 WILD-TYPE" 
    TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS 
  "EME2 MUTATED" "EME2 WILD-TYPE" "EME2 WILD-TYPE" "EME2 WILD-TYPE" 
    TCGA-IB-A5ST     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
"EME2 WILD-TYPE" "EME2 WILD-TYPE" "EME2 WILD-TYPE" "EME2 WILD-TYPE" 
    TCGA-PZ-A5RE     TCGA-Q3-A5QY     TCGA-US-A779     TCGA-US-A77E 
"EME2 WILD-TYPE" "EME2 WILD-TYPE" "EME2 WILD-TYPE" "EME2 WILD-TYPE" 
    TCGA-US-A77J 
"EME2 WILD-TYPE" 
    TCGA-F2-6879     TCGA-F2-6880     TCGA-F2-7273     TCGA-F2-7276 
"EME2 WILD-TYPE" "EME2 WILD-TYPE" "EME2 WILD-TYPE" "EME2 WILD-TYPE" 
    TCGA-F2-A44G     TCGA-F2-A44H     TCGA-FB-A4P5     TCGA-FB-A4P6 
"EME2 WILD-TYPE" "EME2 WILD-TYPE" "EME2 WILD-TYPE"   "EME2 MUTATED" 
    TCGA-FB-A545     TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-FB-A7DR 
"EME2 WILD-TYPE" "EME2 WILD-TYPE" "EME2 WILD-TYPE" "EME2 WILD-TYPE" 
    TCGA-FZ-5920     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-H6-8124 
"EME2 WILD-TYPE" "EME2 WILD-TYPE" "EME2 WILD-TYPE" "EME2 WILD-TYPE" 
    TCGA-H6-A45N     TCGA-H8-A6C1     TCGA-HZ-7289     TCGA-HZ-7918 
  "EME2 MUTATED" "EME2 WILD-TYPE" "EME2 WILD-TYPE" "EME2 WILD-TYPE" 
    TCGA-HZ-7919     TCGA-HZ-7922     TCGA-HZ-7923     TCGA-HZ-7924 
"EME2 WILD-TYPE" "EME2 WILD-TYPE" "EME2 WILD-TYPE" "EME2 WILD-TYPE" 
    TCGA-HZ-7925     TCGA-HZ-7926     TCGA-HZ-8001     TCGA-HZ-8002 
"EME2 WILD-TYPE" "EME2 WILD-TYPE" "EME2 WILD-TYPE"   "EME2 MUTATED" 
    TCGA-HZ-8003     TCGA-HZ-8005     TCGA-HZ-8315     TCGA-HZ-8317 
"EME2 WILD-TYPE" "EME2 WILD-TYPE" "EME2 WILD-TYPE" "EME2 WILD-TYPE" 
    TCGA-HZ-8636     TCGA-HZ-8638     TCGA-HZ-A49G     TCGA-HZ-A49H 
"EME2 WILD-TYPE" "EME2 WILD-TYPE"   "EME2 MUTATED" "EME2 WILD-TYPE" 
    TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-IB-7644     TCGA-IB-7645 
"EME2 WILD-TYPE"   "EME2 MUTATED" "EME2 WILD-TYPE" "EME2 WILD-TYPE" 
    TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7651 
"EME2 WILD-TYPE" "EME2 WILD-TYPE" "EME2 WILD-TYPE"   "EME2 MUTATED" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887 
"EME2 WILD-TYPE"   "EME2 MUTATED" "EME2 WILD-TYPE" "EME2 WILD-TYPE" 
    TCGA-IB-7888     TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891 
"EME2 WILD-TYPE" "EME2 WILD-TYPE" "EME2 WILD-TYPE" "EME2 WILD-TYPE" 
    TCGA-IB-7893     TCGA-IB-7897     TCGA-IB-8126     TCGA-IB-8127 
"EME2 WILD-TYPE"   "EME2 MUTATED" "EME2 WILD-TYPE" "EME2 WILD-TYPE" 
    TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS 
  "EME2 MUTATED" "EME2 WILD-TYPE" "EME2 WILD-TYPE" "EME2 WILD-TYPE" 
    TCGA-IB-A5ST     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
"EME2 WILD-TYPE" "EME2 WILD-TYPE" "EME2 WILD-TYPE" "EME2 WILD-TYPE" 
    TCGA-PZ-A5RE     TCGA-Q3-A5QY     TCGA-US-A779     TCGA-US-A77E 
"EME2 WILD-TYPE" "EME2 WILD-TYPE" "EME2 WILD-TYPE" "EME2 WILD-TYPE" 
    TCGA-US-A77J 
"EME2 WILD-TYPE" 
[1] "hr=" "1.5"
D127V2, continuous
                vv
clus             STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  EME2 MUTATED          0        0         0         9         0        0
  EME2 WILD-TYPE        1        4        11        42         2        3
D127V3, multiclass
                vv
clus             T1+T2 T3+T4
  EME2 MUTATED       1     8
  EME2 WILD-TYPE     5    58
D127V4, multiclass
       clus
vv      EME2 MUTATED EME2 WILD-TYPE
  T1+T2            1              5
  T3+T4            8             58
D127V5, binary
                cls
clus              0  1
  EME2 MUTATED    0  9
  EME2 WILD-TYPE 17 45
[1] "tbl2"
                cls
clus             [,1] [,2]
  EME2 MUTATED      0    9
  EME2 WILD-TYPE   17   45
   clus
vv  EME2 MUTATED EME2 WILD-TYPE
  0            0             17
  1            9             45
                vv
clus             M0 M1 MX
  EME2 MUTATED    4  0  5
  EME2 WILD-TYPE 35  3 25
D127V6, multiclass
    clus
vv   EME2 MUTATED EME2 WILD-TYPE
  M0            4             35
  M1            0              3
  MX            5             25
D127V7, binary
                cls
clus              0  1
  EME2 MUTATED    5  4
  EME2 WILD-TYPE 31 32
[1] "tbl2"
                cls
clus             [,1] [,2]
  EME2 MUTATED      5    4
  EME2 WILD-TYPE   31   32
        clus
vv       EME2 MUTATED EME2 WILD-TYPE
  FEMALE            5             31
  MALE              4             32
                vv
clus             PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  EME2 MUTATED                                     7
  EME2 WILD-TYPE                                  58
                vv
clus             PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  EME2 MUTATED                                       2
  EME2 WILD-TYPE                                     2
                vv
clus             PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  EME2 MUTATED                                                  0
  EME2 WILD-TYPE                                                2
D127V8, multiclass
                                                  clus
vv                                                 EME2 MUTATED EME2 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                         7             58
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                       2              2
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA            0              2
D127V9, continuous
D127V10, continuous
                vv
clus             R0 R1 RX
  EME2 MUTATED    5  2  0
  EME2 WILD-TYPE 37 22  2
D127V11, multiclass
    clus
vv   EME2 MUTATED EME2 WILD-TYPE
  R0            5             37
  R1            2             22
  RX            0              2
D127V12, continuous

Clustering(128) Variable = TP53 MUTATION ANALYSIS
D128V1, survival
                sevent
clus2             0  1
  TP53 MUTATED   25 18
  TP53 WILD-TYPE 15 11
  TP53 MUTATED TP53 WILD-TYPE 
            43             26 
  TP53 MUTATED TP53 WILD-TYPE 
            18             11 
$`TP53 MUTATED`
TCGA-F2-6879 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FZ-5920 TCGA-H6-8124 
       10.98        12.66         2.47         0.03         2.01        12.89 
TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7922 TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8001 
        7.66        13.02         0.13        11.87         0.26         0.62 
TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8636 TCGA-HZ-A49G 
        0.79         0.69         3.95         0.92         0.16         0.76 
TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 
        6.38         1.51        11.41        49.38         4.77        21.90 
TCGA-IB-7649 TCGA-IB-7652 TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 
       15.35        15.65         4.04         3.62        43.79        15.81 
TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP 
       19.66        16.04         3.85        17.16        10.82         9.86 
TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W TCGA-PZ-A5RE 
       15.12         0.26         1.35         4.18         3.62         8.12 
TCGA-US-A779 
       16.80 

$`TP53 WILD-TYPE`
TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H TCGA-FB-A4P5 
        9.70        11.84         7.10         5.03        19.27         0.13 
TCGA-FB-A4P6 TCGA-FB-A7DR TCGA-FZ-5922 TCGA-FZ-5923 TCGA-HZ-7289 TCGA-HZ-7918 
       11.93         5.46        36.20        20.81         7.89         0.92 
TCGA-HZ-7919 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-8317 TCGA-HZ-8638 TCGA-HZ-A49H 
        0.66         0.26        12.13         0.53         2.99         0.95 
TCGA-IB-7651 TCGA-IB-7885 TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-A5SQ TCGA-Q3-A5QY 
       19.82        27.98        15.98         0.56         7.20        13.68 
TCGA-US-A77E TCGA-US-A77J 
       14.14        18.67 

  TP53 MUTATED TP53 WILD-TYPE 
          0.03           0.13 
  TP53 MUTATED TP53 WILD-TYPE 
         49.38          36.20 
  TP53 MUTATED TP53 WILD-TYPE 
         6.380          8.795 
[1] "0.0 - 49.4 (6.4)" "0.1 - 36.2 (8.8)"
    TCGA-F2-6879     TCGA-F2-6880     TCGA-F2-7273     TCGA-F2-7276 
  "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-F2-A44G     TCGA-F2-A44H     TCGA-FB-A4P5     TCGA-FB-A4P6 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-FB-A545     TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-FB-A7DR 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-FZ-5920     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-H6-8124 
  "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-H6-A45N     TCGA-H8-A6C1     TCGA-HZ-7289     TCGA-HZ-7918 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-HZ-7919     TCGA-HZ-7922     TCGA-HZ-7923     TCGA-HZ-7924 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-HZ-7925     TCGA-HZ-7926     TCGA-HZ-8001     TCGA-HZ-8002 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-HZ-8003     TCGA-HZ-8005     TCGA-HZ-8315     TCGA-HZ-8317 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-HZ-8636     TCGA-HZ-8638     TCGA-HZ-A49G     TCGA-HZ-A49H 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-IB-7644     TCGA-IB-7645 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7651 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-IB-7888     TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-IB-7893     TCGA-IB-7897     TCGA-IB-8126     TCGA-IB-8127 
  "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-IB-A5ST     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-PZ-A5RE     TCGA-Q3-A5QY     TCGA-US-A779     TCGA-US-A77E 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-US-A77J 
"TP53 WILD-TYPE" 
    TCGA-F2-6879     TCGA-F2-6880     TCGA-F2-7273     TCGA-F2-7276 
  "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-F2-A44G     TCGA-F2-A44H     TCGA-FB-A4P5     TCGA-FB-A4P6 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-FB-A545     TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-FB-A7DR 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-FZ-5920     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-H6-8124 
  "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-H6-A45N     TCGA-H8-A6C1     TCGA-HZ-7289     TCGA-HZ-7918 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-HZ-7919     TCGA-HZ-7922     TCGA-HZ-7923     TCGA-HZ-7924 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-HZ-7925     TCGA-HZ-7926     TCGA-HZ-8001     TCGA-HZ-8002 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-HZ-8003     TCGA-HZ-8005     TCGA-HZ-8315     TCGA-HZ-8317 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-HZ-8636     TCGA-HZ-8638     TCGA-HZ-A49G     TCGA-HZ-A49H 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-IB-7644     TCGA-IB-7645 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7651 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-IB-7888     TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-IB-7893     TCGA-IB-7897     TCGA-IB-8126     TCGA-IB-8127 
  "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-IB-A5ST     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-PZ-A5RE     TCGA-Q3-A5QY     TCGA-US-A779     TCGA-US-A77E 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-US-A77J 
"TP53 WILD-TYPE" 
    TCGA-F2-6879     TCGA-F2-6880     TCGA-F2-7273     TCGA-F2-7276 
  "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-F2-A44G     TCGA-F2-A44H     TCGA-FB-A4P5     TCGA-FB-A4P6 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-FB-A545     TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-FB-A7DR 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-FZ-5920     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-H6-8124 
  "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-H6-A45N     TCGA-H8-A6C1     TCGA-HZ-7289     TCGA-HZ-7918 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-HZ-7919     TCGA-HZ-7922     TCGA-HZ-7923     TCGA-HZ-7924 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-HZ-7925     TCGA-HZ-7926     TCGA-HZ-8001     TCGA-HZ-8002 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-HZ-8003     TCGA-HZ-8005     TCGA-HZ-8315     TCGA-HZ-8317 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-HZ-8636     TCGA-HZ-8638     TCGA-HZ-A49G     TCGA-HZ-A49H 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-IB-7644     TCGA-IB-7645 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7651 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-IB-7888     TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-IB-7893     TCGA-IB-7897     TCGA-IB-8126     TCGA-IB-8127 
  "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-IB-A5ST     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-PZ-A5RE     TCGA-Q3-A5QY     TCGA-US-A779     TCGA-US-A77E 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-US-A77J 
"TP53 WILD-TYPE" 
[1] "hr=" "1.1"
D128V2, continuous
                vv
clus             STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  TP53 MUTATED          0        2         6        34         1        2
  TP53 WILD-TYPE        1        2         5        17         1        1
D128V3, multiclass
                vv
clus             T1+T2 T3+T4
  TP53 MUTATED       3    42
  TP53 WILD-TYPE     3    24
D128V4, multiclass
       clus
vv      TP53 MUTATED TP53 WILD-TYPE
  T1+T2            3              3
  T3+T4           42             24
D128V5, binary
                cls
clus              0  1
  TP53 MUTATED   10 35
  TP53 WILD-TYPE  7 19
[1] "tbl2"
                cls
clus             [,1] [,2]
  TP53 MUTATED     10   35
  TP53 WILD-TYPE    7   19
   clus
vv  TP53 MUTATED TP53 WILD-TYPE
  0           10              7
  1           35             19
                vv
clus             M0 M1 MX
  TP53 MUTATED   25  2 18
  TP53 WILD-TYPE 14  1 12
D128V6, multiclass
    clus
vv   TP53 MUTATED TP53 WILD-TYPE
  M0           25             14
  M1            2              1
  MX           18             12
D128V7, binary
                cls
clus              0  1
  TP53 MUTATED   23 22
  TP53 WILD-TYPE 13 14
[1] "tbl2"
                cls
clus             [,1] [,2]
  TP53 MUTATED     23   22
  TP53 WILD-TYPE   13   14
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  FEMALE           23             13
  MALE             22             14
                vv
clus             PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  TP53 MUTATED                                    41
  TP53 WILD-TYPE                                  24
                vv
clus             PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  TP53 MUTATED                                       3
  TP53 WILD-TYPE                                     1
                vv
clus             PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  TP53 MUTATED                                                  0
  TP53 WILD-TYPE                                                2
D128V8, multiclass
                                                  clus
vv                                                 TP53 MUTATED TP53 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                        41             24
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                       3              1
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA            0              2
D128V9, continuous
D128V10, continuous
                vv
clus             R0 R1 RX
  TP53 MUTATED   23 18  1
  TP53 WILD-TYPE 19  6  1
D128V11, multiclass
    clus
vv   TP53 MUTATED TP53 WILD-TYPE
  R0           23             19
  R1           18              6
  RX            1              1
D128V12, continuous

Clustering(129) Variable = ALS2CR11 MUTATION ANALYSIS
D129V1, survival
                    sevent
clus2                 0  1
  ALS2CR11 MUTATED    7  5
  ALS2CR11 WILD-TYPE 33 24
  ALS2CR11 MUTATED ALS2CR11 WILD-TYPE 
                12                 57 
  ALS2CR11 MUTATED ALS2CR11 WILD-TYPE 
                 5                 24 
$`ALS2CR11 MUTATED`
TCGA-F2-6880 TCGA-F2-7276 TCGA-FB-A4P5 TCGA-HZ-8001 TCGA-HZ-8005 TCGA-HZ-8317 
        9.70         7.10         0.13         0.62         3.95         0.53 
TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7651 TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7886 
        6.38         1.51        19.82        15.65        27.98         4.04 

$`ALS2CR11 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-7273 TCGA-F2-A44G TCGA-F2-A44H TCGA-FB-A4P6 TCGA-FB-A545 
       10.98        11.84         5.03        19.27        11.93        12.66 
TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR TCGA-FZ-5920 TCGA-FZ-5922 TCGA-FZ-5923 
        2.47         0.03         5.46         2.01        36.20        20.81 
TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-7919 
       12.89         7.66        13.02         7.89         0.92         0.66 
TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8002 
        0.13         0.26        12.13        11.87         0.26         0.79 
TCGA-HZ-8003 TCGA-HZ-8315 TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H 
        0.69         0.92         0.16         2.99         0.76         0.95 
TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7887 
       11.41        49.38         4.77        21.90        15.35         3.62 
TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-7897 
       43.79        15.81        19.66        16.04         3.85        15.98 
TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS 
        0.56        17.16        10.82         9.86         7.20        15.12 
TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W TCGA-PZ-A5RE TCGA-Q3-A5QY 
        0.26         1.35         4.18         3.62         8.12        13.68 
TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
       16.80        14.14        18.67 

  ALS2CR11 MUTATED ALS2CR11 WILD-TYPE 
              0.13               0.03 
  ALS2CR11 MUTATED ALS2CR11 WILD-TYPE 
             27.98              49.38 
  ALS2CR11 MUTATED ALS2CR11 WILD-TYPE 
              5.21               8.12 
[1] "0.1 - 28.0 (5.2)" "0.0 - 49.4 (8.1)"
        TCGA-F2-6879         TCGA-F2-6880         TCGA-F2-7273 
"ALS2CR11 WILD-TYPE"   "ALS2CR11 MUTATED" "ALS2CR11 WILD-TYPE" 
        TCGA-F2-7276         TCGA-F2-A44G         TCGA-F2-A44H 
  "ALS2CR11 MUTATED" "ALS2CR11 WILD-TYPE" "ALS2CR11 WILD-TYPE" 
        TCGA-FB-A4P5         TCGA-FB-A4P6         TCGA-FB-A545 
  "ALS2CR11 MUTATED" "ALS2CR11 WILD-TYPE" "ALS2CR11 WILD-TYPE" 
        TCGA-FB-A5VM         TCGA-FB-A78T         TCGA-FB-A7DR 
"ALS2CR11 WILD-TYPE" "ALS2CR11 WILD-TYPE" "ALS2CR11 WILD-TYPE" 
        TCGA-FZ-5920         TCGA-FZ-5922         TCGA-FZ-5923 
"ALS2CR11 WILD-TYPE" "ALS2CR11 WILD-TYPE" "ALS2CR11 WILD-TYPE" 
        TCGA-H6-8124         TCGA-H6-A45N         TCGA-H8-A6C1 
"ALS2CR11 WILD-TYPE" "ALS2CR11 WILD-TYPE" "ALS2CR11 WILD-TYPE" 
        TCGA-HZ-7289         TCGA-HZ-7918         TCGA-HZ-7919 
"ALS2CR11 WILD-TYPE" "ALS2CR11 WILD-TYPE" "ALS2CR11 WILD-TYPE" 
        TCGA-HZ-7922         TCGA-HZ-7923         TCGA-HZ-7924 
"ALS2CR11 WILD-TYPE" "ALS2CR11 WILD-TYPE" "ALS2CR11 WILD-TYPE" 
        TCGA-HZ-7925         TCGA-HZ-7926         TCGA-HZ-8001 
"ALS2CR11 WILD-TYPE" "ALS2CR11 WILD-TYPE"   "ALS2CR11 MUTATED" 
        TCGA-HZ-8002         TCGA-HZ-8003         TCGA-HZ-8005 
"ALS2CR11 WILD-TYPE" "ALS2CR11 WILD-TYPE"   "ALS2CR11 MUTATED" 
        TCGA-HZ-8315         TCGA-HZ-8317         TCGA-HZ-8636 
"ALS2CR11 WILD-TYPE"   "ALS2CR11 MUTATED" "ALS2CR11 WILD-TYPE" 
        TCGA-HZ-8638         TCGA-HZ-A49G         TCGA-HZ-A49H 
"ALS2CR11 WILD-TYPE" "ALS2CR11 WILD-TYPE" "ALS2CR11 WILD-TYPE" 
        TCGA-HZ-A4BH         TCGA-HZ-A4BK         TCGA-IB-7644 
  "ALS2CR11 MUTATED"   "ALS2CR11 MUTATED" "ALS2CR11 WILD-TYPE" 
        TCGA-IB-7645         TCGA-IB-7646         TCGA-IB-7647 
"ALS2CR11 WILD-TYPE" "ALS2CR11 WILD-TYPE" "ALS2CR11 WILD-TYPE" 
        TCGA-IB-7649         TCGA-IB-7651         TCGA-IB-7652 
"ALS2CR11 WILD-TYPE"   "ALS2CR11 MUTATED"   "ALS2CR11 MUTATED" 
        TCGA-IB-7885         TCGA-IB-7886         TCGA-IB-7887 
  "ALS2CR11 MUTATED"   "ALS2CR11 MUTATED" "ALS2CR11 WILD-TYPE" 
        TCGA-IB-7888         TCGA-IB-7889         TCGA-IB-7890 
"ALS2CR11 WILD-TYPE" "ALS2CR11 WILD-TYPE" "ALS2CR11 WILD-TYPE" 
        TCGA-IB-7891         TCGA-IB-7893         TCGA-IB-7897 
"ALS2CR11 WILD-TYPE" "ALS2CR11 WILD-TYPE" "ALS2CR11 WILD-TYPE" 
        TCGA-IB-8126         TCGA-IB-8127         TCGA-IB-A5SO 
"ALS2CR11 WILD-TYPE" "ALS2CR11 WILD-TYPE" "ALS2CR11 WILD-TYPE" 
        TCGA-IB-A5SP         TCGA-IB-A5SQ         TCGA-IB-A5SS 
"ALS2CR11 WILD-TYPE" "ALS2CR11 WILD-TYPE" "ALS2CR11 WILD-TYPE" 
        TCGA-IB-A5ST         TCGA-IB-A6UG         TCGA-LB-A7SX 
"ALS2CR11 WILD-TYPE" "ALS2CR11 WILD-TYPE" "ALS2CR11 WILD-TYPE" 
        TCGA-OE-A75W         TCGA-PZ-A5RE         TCGA-Q3-A5QY 
"ALS2CR11 WILD-TYPE" "ALS2CR11 WILD-TYPE" "ALS2CR11 WILD-TYPE" 
        TCGA-US-A779         TCGA-US-A77E         TCGA-US-A77J 
"ALS2CR11 WILD-TYPE" "ALS2CR11 WILD-TYPE" "ALS2CR11 WILD-TYPE" 
        TCGA-F2-6879         TCGA-F2-6880         TCGA-F2-7273 
"ALS2CR11 WILD-TYPE"   "ALS2CR11 MUTATED" "ALS2CR11 WILD-TYPE" 
        TCGA-F2-7276         TCGA-F2-A44G         TCGA-F2-A44H 
  "ALS2CR11 MUTATED" "ALS2CR11 WILD-TYPE" "ALS2CR11 WILD-TYPE" 
        TCGA-FB-A4P5         TCGA-FB-A4P6         TCGA-FB-A545 
  "ALS2CR11 MUTATED" "ALS2CR11 WILD-TYPE" "ALS2CR11 WILD-TYPE" 
        TCGA-FB-A5VM         TCGA-FB-A78T         TCGA-FB-A7DR 
"ALS2CR11 WILD-TYPE" "ALS2CR11 WILD-TYPE" "ALS2CR11 WILD-TYPE" 
        TCGA-FZ-5920         TCGA-FZ-5922         TCGA-FZ-5923 
"ALS2CR11 WILD-TYPE" "ALS2CR11 WILD-TYPE" "ALS2CR11 WILD-TYPE" 
        TCGA-H6-8124         TCGA-H6-A45N         TCGA-H8-A6C1 
"ALS2CR11 WILD-TYPE" "ALS2CR11 WILD-TYPE" "ALS2CR11 WILD-TYPE" 
        TCGA-HZ-7289         TCGA-HZ-7918         TCGA-HZ-7919 
"ALS2CR11 WILD-TYPE" "ALS2CR11 WILD-TYPE" "ALS2CR11 WILD-TYPE" 
        TCGA-HZ-7922         TCGA-HZ-7923         TCGA-HZ-7924 
"ALS2CR11 WILD-TYPE" "ALS2CR11 WILD-TYPE" "ALS2CR11 WILD-TYPE" 
        TCGA-HZ-7925         TCGA-HZ-7926         TCGA-HZ-8001 
"ALS2CR11 WILD-TYPE" "ALS2CR11 WILD-TYPE"   "ALS2CR11 MUTATED" 
        TCGA-HZ-8002         TCGA-HZ-8003         TCGA-HZ-8005 
"ALS2CR11 WILD-TYPE" "ALS2CR11 WILD-TYPE"   "ALS2CR11 MUTATED" 
        TCGA-HZ-8315         TCGA-HZ-8317         TCGA-HZ-8636 
"ALS2CR11 WILD-TYPE"   "ALS2CR11 MUTATED" "ALS2CR11 WILD-TYPE" 
        TCGA-HZ-8638         TCGA-HZ-A49G         TCGA-HZ-A49H 
"ALS2CR11 WILD-TYPE" "ALS2CR11 WILD-TYPE" "ALS2CR11 WILD-TYPE" 
        TCGA-HZ-A4BH         TCGA-HZ-A4BK         TCGA-IB-7644 
  "ALS2CR11 MUTATED"   "ALS2CR11 MUTATED" "ALS2CR11 WILD-TYPE" 
        TCGA-IB-7645         TCGA-IB-7646         TCGA-IB-7647 
"ALS2CR11 WILD-TYPE" "ALS2CR11 WILD-TYPE" "ALS2CR11 WILD-TYPE" 
        TCGA-IB-7649         TCGA-IB-7651         TCGA-IB-7652 
"ALS2CR11 WILD-TYPE"   "ALS2CR11 MUTATED"   "ALS2CR11 MUTATED" 
        TCGA-IB-7885         TCGA-IB-7886         TCGA-IB-7887 
  "ALS2CR11 MUTATED"   "ALS2CR11 MUTATED" "ALS2CR11 WILD-TYPE" 
        TCGA-IB-7888         TCGA-IB-7889         TCGA-IB-7890 
"ALS2CR11 WILD-TYPE" "ALS2CR11 WILD-TYPE" "ALS2CR11 WILD-TYPE" 
        TCGA-IB-7891         TCGA-IB-7893         TCGA-IB-7897 
"ALS2CR11 WILD-TYPE" "ALS2CR11 WILD-TYPE" "ALS2CR11 WILD-TYPE" 
        TCGA-IB-8126         TCGA-IB-8127         TCGA-IB-A5SO 
"ALS2CR11 WILD-TYPE" "ALS2CR11 WILD-TYPE" "ALS2CR11 WILD-TYPE" 
        TCGA-IB-A5SP         TCGA-IB-A5SQ         TCGA-IB-A5SS 
"ALS2CR11 WILD-TYPE" "ALS2CR11 WILD-TYPE" "ALS2CR11 WILD-TYPE" 
        TCGA-IB-A5ST         TCGA-IB-A6UG         TCGA-LB-A7SX 
"ALS2CR11 WILD-TYPE" "ALS2CR11 WILD-TYPE" "ALS2CR11 WILD-TYPE" 
        TCGA-OE-A75W         TCGA-PZ-A5RE         TCGA-Q3-A5QY 
"ALS2CR11 WILD-TYPE" "ALS2CR11 WILD-TYPE" "ALS2CR11 WILD-TYPE" 
        TCGA-US-A779         TCGA-US-A77E         TCGA-US-A77J 
"ALS2CR11 WILD-TYPE" "ALS2CR11 WILD-TYPE" "ALS2CR11 WILD-TYPE" 
        TCGA-F2-6879         TCGA-F2-6880         TCGA-F2-7273 
"ALS2CR11 WILD-TYPE"   "ALS2CR11 MUTATED" "ALS2CR11 WILD-TYPE" 
        TCGA-F2-7276         TCGA-F2-A44G         TCGA-F2-A44H 
  "ALS2CR11 MUTATED" "ALS2CR11 WILD-TYPE" "ALS2CR11 WILD-TYPE" 
        TCGA-FB-A4P5         TCGA-FB-A4P6         TCGA-FB-A545 
  "ALS2CR11 MUTATED" "ALS2CR11 WILD-TYPE" "ALS2CR11 WILD-TYPE" 
        TCGA-FB-A5VM         TCGA-FB-A78T         TCGA-FB-A7DR 
"ALS2CR11 WILD-TYPE" "ALS2CR11 WILD-TYPE" "ALS2CR11 WILD-TYPE" 
        TCGA-FZ-5920         TCGA-FZ-5922         TCGA-FZ-5923 
"ALS2CR11 WILD-TYPE" "ALS2CR11 WILD-TYPE" "ALS2CR11 WILD-TYPE" 
        TCGA-H6-8124         TCGA-H6-A45N         TCGA-H8-A6C1 
"ALS2CR11 WILD-TYPE" "ALS2CR11 WILD-TYPE" "ALS2CR11 WILD-TYPE" 
        TCGA-HZ-7289         TCGA-HZ-7918         TCGA-HZ-7919 
"ALS2CR11 WILD-TYPE" "ALS2CR11 WILD-TYPE" "ALS2CR11 WILD-TYPE" 
        TCGA-HZ-7922         TCGA-HZ-7923         TCGA-HZ-7924 
"ALS2CR11 WILD-TYPE" "ALS2CR11 WILD-TYPE" "ALS2CR11 WILD-TYPE" 
        TCGA-HZ-7925         TCGA-HZ-7926         TCGA-HZ-8001 
"ALS2CR11 WILD-TYPE" "ALS2CR11 WILD-TYPE"   "ALS2CR11 MUTATED" 
        TCGA-HZ-8002         TCGA-HZ-8003         TCGA-HZ-8005 
"ALS2CR11 WILD-TYPE" "ALS2CR11 WILD-TYPE"   "ALS2CR11 MUTATED" 
        TCGA-HZ-8315         TCGA-HZ-8317         TCGA-HZ-8636 
"ALS2CR11 WILD-TYPE"   "ALS2CR11 MUTATED" "ALS2CR11 WILD-TYPE" 
        TCGA-HZ-8638         TCGA-HZ-A49G         TCGA-HZ-A49H 
"ALS2CR11 WILD-TYPE" "ALS2CR11 WILD-TYPE" "ALS2CR11 WILD-TYPE" 
        TCGA-HZ-A4BH         TCGA-HZ-A4BK         TCGA-IB-7644 
  "ALS2CR11 MUTATED"   "ALS2CR11 MUTATED" "ALS2CR11 WILD-TYPE" 
        TCGA-IB-7645         TCGA-IB-7646         TCGA-IB-7647 
"ALS2CR11 WILD-TYPE" "ALS2CR11 WILD-TYPE" "ALS2CR11 WILD-TYPE" 
        TCGA-IB-7649         TCGA-IB-7651         TCGA-IB-7652 
"ALS2CR11 WILD-TYPE"   "ALS2CR11 MUTATED"   "ALS2CR11 MUTATED" 
        TCGA-IB-7885         TCGA-IB-7886         TCGA-IB-7887 
  "ALS2CR11 MUTATED"   "ALS2CR11 MUTATED" "ALS2CR11 WILD-TYPE" 
        TCGA-IB-7888         TCGA-IB-7889         TCGA-IB-7890 
"ALS2CR11 WILD-TYPE" "ALS2CR11 WILD-TYPE" "ALS2CR11 WILD-TYPE" 
        TCGA-IB-7891         TCGA-IB-7893         TCGA-IB-7897 
"ALS2CR11 WILD-TYPE" "ALS2CR11 WILD-TYPE" "ALS2CR11 WILD-TYPE" 
        TCGA-IB-8126         TCGA-IB-8127         TCGA-IB-A5SO 
"ALS2CR11 WILD-TYPE" "ALS2CR11 WILD-TYPE" "ALS2CR11 WILD-TYPE" 
        TCGA-IB-A5SP         TCGA-IB-A5SQ         TCGA-IB-A5SS 
"ALS2CR11 WILD-TYPE" "ALS2CR11 WILD-TYPE" "ALS2CR11 WILD-TYPE" 
        TCGA-IB-A5ST         TCGA-IB-A6UG         TCGA-LB-A7SX 
"ALS2CR11 WILD-TYPE" "ALS2CR11 WILD-TYPE" "ALS2CR11 WILD-TYPE" 
        TCGA-OE-A75W         TCGA-PZ-A5RE         TCGA-Q3-A5QY 
"ALS2CR11 WILD-TYPE" "ALS2CR11 WILD-TYPE" "ALS2CR11 WILD-TYPE" 
        TCGA-US-A779         TCGA-US-A77E         TCGA-US-A77J 
"ALS2CR11 WILD-TYPE" "ALS2CR11 WILD-TYPE" "ALS2CR11 WILD-TYPE" 
[1] "hr=" "1.2"
D129V2, continuous
                    vv
clus                 STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  ALS2CR11 MUTATED          0        1         0        11         1        0
  ALS2CR11 WILD-TYPE        1        3        11        40         1        3
D129V3, multiclass
                    vv
clus                 T1+T2 T3+T4
  ALS2CR11 MUTATED       1    12
  ALS2CR11 WILD-TYPE     5    54
D129V4, multiclass
       clus
vv      ALS2CR11 MUTATED ALS2CR11 WILD-TYPE
  T1+T2                1                  5
  T3+T4               12                 54
D129V5, binary
                    cls
clus                  0  1
  ALS2CR11 MUTATED    2 11
  ALS2CR11 WILD-TYPE 15 43
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  ALS2CR11 MUTATED      2   11
  ALS2CR11 WILD-TYPE   15   43
   clus
vv  ALS2CR11 MUTATED ALS2CR11 WILD-TYPE
  0                2                 15
  1               11                 43
                    vv
clus                 M0 M1 MX
  ALS2CR11 MUTATED    6  0  7
  ALS2CR11 WILD-TYPE 33  3 23
D129V6, multiclass
    clus
vv   ALS2CR11 MUTATED ALS2CR11 WILD-TYPE
  M0                6                 33
  M1                0                  3
  MX                7                 23
D129V7, binary
                    cls
clus                  0  1
  ALS2CR11 MUTATED    5  8
  ALS2CR11 WILD-TYPE 31 28
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  ALS2CR11 MUTATED      5    8
  ALS2CR11 WILD-TYPE   31   28
        clus
vv       ALS2CR11 MUTATED ALS2CR11 WILD-TYPE
  FEMALE                5                 31
  MALE                  8                 28
                    vv
clus                 PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  ALS2CR11 MUTATED                                    12
  ALS2CR11 WILD-TYPE                                  53
                    vv
clus                 PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  ALS2CR11 MUTATED                                       1
  ALS2CR11 WILD-TYPE                                     3
                    vv
clus                 PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  ALS2CR11 MUTATED                                                  0
  ALS2CR11 WILD-TYPE                                                2
D129V8, multiclass
                                                  clus
vv                                                 ALS2CR11 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                            12
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                           1
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                0
                                                  clus
vv                                                 ALS2CR11 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                              53
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                             3
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                  2
D129V9, continuous
D129V10, continuous
                    vv
clus                 R0 R1 RX
  ALS2CR11 MUTATED    7  6  0
  ALS2CR11 WILD-TYPE 35 18  2
D129V11, multiclass
    clus
vv   ALS2CR11 MUTATED ALS2CR11 WILD-TYPE
  R0                7                 35
  R1                6                 18
  RX                0                  2
D129V12, continuous

Clustering(130) Variable = SALL1 MUTATION ANALYSIS
D130V1, survival
                 sevent
clus2              0  1
  SALL1 MUTATED    8  3
  SALL1 WILD-TYPE 32 26
  SALL1 MUTATED SALL1 WILD-TYPE 
             11              58 
  SALL1 MUTATED SALL1 WILD-TYPE 
              3              26 
$`SALL1 MUTATED`
TCGA-F2-7276 TCGA-FB-A545 TCGA-HZ-7923 TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-A49G 
        7.10        12.66         0.26         0.92         0.53         0.76 
TCGA-IB-7651 TCGA-IB-7885 TCGA-IB-7897 TCGA-IB-8126 TCGA-PZ-A5RE 
       19.82        27.98        15.98         0.56         8.12 

$`SALL1 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-A44G TCGA-F2-A44H TCGA-FB-A4P5 
       10.98         9.70        11.84         5.03        19.27         0.13 
TCGA-FB-A4P6 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR TCGA-FZ-5920 TCGA-FZ-5922 
       11.93         2.47         0.03         5.46         2.01        36.20 
TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7289 TCGA-HZ-7918 
       20.81        12.89         7.66        13.02         7.89         0.92 
TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8001 
        0.66         0.13        12.13        11.87         0.26         0.62 
TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49H 
        0.79         0.69         3.95         0.16         2.99         0.95 
TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 
        6.38         1.51        11.41        49.38         4.77        21.90 
TCGA-IB-7649 TCGA-IB-7652 TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 
       15.35        15.65         4.04         3.62        43.79        15.81 
TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP 
       19.66        16.04         3.85        17.16        10.82         9.86 
TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W 
        7.20        15.12         0.26         1.35         4.18         3.62 
TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
       13.68        16.80        14.14        18.67 

  SALL1 MUTATED SALL1 WILD-TYPE 
           0.26            0.03 
  SALL1 MUTATED SALL1 WILD-TYPE 
          27.98           49.38 
  SALL1 MUTATED SALL1 WILD-TYPE 
          7.100           7.775 
[1] "0.3 - 28.0 (7.1)" "0.0 - 49.4 (7.8)"
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"SALL1 WILD-TYPE" "SALL1 WILD-TYPE" "SALL1 WILD-TYPE"   "SALL1 MUTATED" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"SALL1 WILD-TYPE" "SALL1 WILD-TYPE" "SALL1 WILD-TYPE" "SALL1 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
  "SALL1 MUTATED" "SALL1 WILD-TYPE" "SALL1 WILD-TYPE" "SALL1 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"SALL1 WILD-TYPE" "SALL1 WILD-TYPE" "SALL1 WILD-TYPE" "SALL1 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"SALL1 WILD-TYPE" "SALL1 WILD-TYPE" "SALL1 WILD-TYPE" "SALL1 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"SALL1 WILD-TYPE" "SALL1 WILD-TYPE"   "SALL1 MUTATED" "SALL1 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"SALL1 WILD-TYPE" "SALL1 WILD-TYPE" "SALL1 WILD-TYPE" "SALL1 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"SALL1 WILD-TYPE" "SALL1 WILD-TYPE"   "SALL1 MUTATED"   "SALL1 MUTATED" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"SALL1 WILD-TYPE" "SALL1 WILD-TYPE"   "SALL1 MUTATED" "SALL1 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"SALL1 WILD-TYPE" "SALL1 WILD-TYPE" "SALL1 WILD-TYPE" "SALL1 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"SALL1 WILD-TYPE" "SALL1 WILD-TYPE" "SALL1 WILD-TYPE"   "SALL1 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"SALL1 WILD-TYPE"   "SALL1 MUTATED" "SALL1 WILD-TYPE" "SALL1 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"SALL1 WILD-TYPE" "SALL1 WILD-TYPE" "SALL1 WILD-TYPE" "SALL1 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"SALL1 WILD-TYPE"   "SALL1 MUTATED"   "SALL1 MUTATED" "SALL1 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"SALL1 WILD-TYPE" "SALL1 WILD-TYPE" "SALL1 WILD-TYPE" "SALL1 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"SALL1 WILD-TYPE" "SALL1 WILD-TYPE" "SALL1 WILD-TYPE" "SALL1 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
  "SALL1 MUTATED" "SALL1 WILD-TYPE" "SALL1 WILD-TYPE" "SALL1 WILD-TYPE" 
     TCGA-US-A77J 
"SALL1 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"SALL1 WILD-TYPE" "SALL1 WILD-TYPE" "SALL1 WILD-TYPE"   "SALL1 MUTATED" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"SALL1 WILD-TYPE" "SALL1 WILD-TYPE" "SALL1 WILD-TYPE" "SALL1 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
  "SALL1 MUTATED" "SALL1 WILD-TYPE" "SALL1 WILD-TYPE" "SALL1 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"SALL1 WILD-TYPE" "SALL1 WILD-TYPE" "SALL1 WILD-TYPE" "SALL1 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"SALL1 WILD-TYPE" "SALL1 WILD-TYPE" "SALL1 WILD-TYPE" "SALL1 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"SALL1 WILD-TYPE" "SALL1 WILD-TYPE"   "SALL1 MUTATED" "SALL1 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"SALL1 WILD-TYPE" "SALL1 WILD-TYPE" "SALL1 WILD-TYPE" "SALL1 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"SALL1 WILD-TYPE" "SALL1 WILD-TYPE"   "SALL1 MUTATED"   "SALL1 MUTATED" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"SALL1 WILD-TYPE" "SALL1 WILD-TYPE"   "SALL1 MUTATED" "SALL1 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"SALL1 WILD-TYPE" "SALL1 WILD-TYPE" "SALL1 WILD-TYPE" "SALL1 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"SALL1 WILD-TYPE" "SALL1 WILD-TYPE" "SALL1 WILD-TYPE"   "SALL1 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"SALL1 WILD-TYPE"   "SALL1 MUTATED" "SALL1 WILD-TYPE" "SALL1 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"SALL1 WILD-TYPE" "SALL1 WILD-TYPE" "SALL1 WILD-TYPE" "SALL1 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"SALL1 WILD-TYPE"   "SALL1 MUTATED"   "SALL1 MUTATED" "SALL1 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"SALL1 WILD-TYPE" "SALL1 WILD-TYPE" "SALL1 WILD-TYPE" "SALL1 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"SALL1 WILD-TYPE" "SALL1 WILD-TYPE" "SALL1 WILD-TYPE" "SALL1 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
  "SALL1 MUTATED" "SALL1 WILD-TYPE" "SALL1 WILD-TYPE" "SALL1 WILD-TYPE" 
     TCGA-US-A77J 
"SALL1 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"SALL1 WILD-TYPE" "SALL1 WILD-TYPE" "SALL1 WILD-TYPE"   "SALL1 MUTATED" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"SALL1 WILD-TYPE" "SALL1 WILD-TYPE" "SALL1 WILD-TYPE" "SALL1 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
  "SALL1 MUTATED" "SALL1 WILD-TYPE" "SALL1 WILD-TYPE" "SALL1 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"SALL1 WILD-TYPE" "SALL1 WILD-TYPE" "SALL1 WILD-TYPE" "SALL1 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"SALL1 WILD-TYPE" "SALL1 WILD-TYPE" "SALL1 WILD-TYPE" "SALL1 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"SALL1 WILD-TYPE" "SALL1 WILD-TYPE"   "SALL1 MUTATED" "SALL1 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"SALL1 WILD-TYPE" "SALL1 WILD-TYPE" "SALL1 WILD-TYPE" "SALL1 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"SALL1 WILD-TYPE" "SALL1 WILD-TYPE"   "SALL1 MUTATED"   "SALL1 MUTATED" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"SALL1 WILD-TYPE" "SALL1 WILD-TYPE"   "SALL1 MUTATED" "SALL1 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"SALL1 WILD-TYPE" "SALL1 WILD-TYPE" "SALL1 WILD-TYPE" "SALL1 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"SALL1 WILD-TYPE" "SALL1 WILD-TYPE" "SALL1 WILD-TYPE"   "SALL1 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"SALL1 WILD-TYPE"   "SALL1 MUTATED" "SALL1 WILD-TYPE" "SALL1 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"SALL1 WILD-TYPE" "SALL1 WILD-TYPE" "SALL1 WILD-TYPE" "SALL1 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"SALL1 WILD-TYPE"   "SALL1 MUTATED"   "SALL1 MUTATED" "SALL1 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"SALL1 WILD-TYPE" "SALL1 WILD-TYPE" "SALL1 WILD-TYPE" "SALL1 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"SALL1 WILD-TYPE" "SALL1 WILD-TYPE" "SALL1 WILD-TYPE" "SALL1 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
  "SALL1 MUTATED" "SALL1 WILD-TYPE" "SALL1 WILD-TYPE" "SALL1 WILD-TYPE" 
     TCGA-US-A77J 
"SALL1 WILD-TYPE" 
[1] "hr=" "1.5"
D130V2, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  SALL1 MUTATED          0        0         2         9         1        0
  SALL1 WILD-TYPE        1        4         9        42         1        3
D130V3, multiclass
                 vv
clus              T1+T2 T3+T4
  SALL1 MUTATED       1    11
  SALL1 WILD-TYPE     5    55
D130V4, multiclass
       clus
vv      SALL1 MUTATED SALL1 WILD-TYPE
  T1+T2             1               5
  T3+T4            11              55
D130V5, binary
                 cls
clus               0  1
  SALL1 MUTATED    2 10
  SALL1 WILD-TYPE 15 44
[1] "tbl2"
                 cls
clus              [,1] [,2]
  SALL1 MUTATED      2   10
  SALL1 WILD-TYPE   15   44
   clus
vv  SALL1 MUTATED SALL1 WILD-TYPE
  0             2              15
  1            10              44
                 vv
clus              M0 M1 MX
  SALL1 MUTATED    6  0  6
  SALL1 WILD-TYPE 33  3 24
D130V6, multiclass
    clus
vv   SALL1 MUTATED SALL1 WILD-TYPE
  M0             6              33
  M1             0               3
  MX             6              24
D130V7, binary
                 cls
clus               0  1
  SALL1 MUTATED    9  3
  SALL1 WILD-TYPE 27 33
[1] "tbl2"
                 cls
clus              [,1] [,2]
  SALL1 MUTATED      9    3
  SALL1 WILD-TYPE   27   33
        clus
vv       SALL1 MUTATED SALL1 WILD-TYPE
  FEMALE             9              27
  MALE               3              33
                 vv
clus              PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  SALL1 MUTATED                                    12
  SALL1 WILD-TYPE                                  53
                 vv
clus              PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  SALL1 MUTATED                                       0
  SALL1 WILD-TYPE                                     4
                 vv
clus              PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  SALL1 MUTATED                                                  0
  SALL1 WILD-TYPE                                                2
D130V8, multiclass
                                                  clus
vv                                                 SALL1 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                         12
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                        0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA             0
                                                  clus
vv                                                 SALL1 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                           53
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                          4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA               2
D130V9, continuous
D130V10, continuous
                 vv
clus              R0 R1 RX
  SALL1 MUTATED    5  5  0
  SALL1 WILD-TYPE 37 19  2
D130V11, multiclass
    clus
vv   SALL1 MUTATED SALL1 WILD-TYPE
  R0             5              37
  R1             5              19
  RX             0               2
D130V12, continuous

Clustering(131) Variable = ZMIZ1 MUTATION ANALYSIS
D131V1, survival
                 sevent
clus2              0  1
  ZMIZ1 MUTATED   11  5
  ZMIZ1 WILD-TYPE 29 24
  ZMIZ1 MUTATED ZMIZ1 WILD-TYPE 
             16              53 
  ZMIZ1 MUTATED ZMIZ1 WILD-TYPE 
              5              24 
$`ZMIZ1 MUTATED`
TCGA-F2-6879 TCGA-F2-6880 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7925 TCGA-HZ-7926 
       10.98         9.70         0.13         0.26        11.87         0.26 
TCGA-HZ-8638 TCGA-HZ-A4BH TCGA-IB-7647 TCGA-IB-7651 TCGA-IB-7885 TCGA-IB-7893 
        2.99         6.38        21.90        19.82        27.98         3.85 
TCGA-IB-7897 TCGA-IB-8126 TCGA-LB-A7SX TCGA-PZ-A5RE 
       15.98         0.56         4.18         8.12 

$`ZMIZ1 WILD-TYPE`
TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H TCGA-FB-A4P5 TCGA-FB-A4P6 
       11.84         7.10         5.03        19.27         0.13        11.93 
TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR TCGA-FZ-5920 TCGA-FZ-5922 
       12.66         2.47         0.03         5.46         2.01        36.20 
TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7289 TCGA-HZ-7918 
       20.81        12.89         7.66        13.02         7.89         0.92 
TCGA-HZ-7919 TCGA-HZ-7924 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 
        0.66        12.13         0.62         0.79         0.69         3.95 
TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8636 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BK 
        0.92         0.53         0.16         0.76         0.95         1.51 
TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7649 TCGA-IB-7652 TCGA-IB-7886 
       11.41        49.38         4.77        15.35        15.65         4.04 
TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-8127 
        3.62        43.79        15.81        19.66        16.04        17.16 
TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG 
       10.82         9.86         7.20        15.12         0.26         1.35 
TCGA-OE-A75W TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
        3.62        13.68        16.80        14.14        18.67 

  ZMIZ1 MUTATED ZMIZ1 WILD-TYPE 
           0.13            0.03 
  ZMIZ1 MUTATED ZMIZ1 WILD-TYPE 
          27.98           49.38 
  ZMIZ1 MUTATED ZMIZ1 WILD-TYPE 
           7.25            7.66 
[1] "0.1 - 28.0 (7.2)" "0.0 - 49.4 (7.7)"
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
  "ZMIZ1 MUTATED"   "ZMIZ1 MUTATED" "ZMIZ1 WILD-TYPE" "ZMIZ1 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"ZMIZ1 WILD-TYPE" "ZMIZ1 WILD-TYPE" "ZMIZ1 WILD-TYPE" "ZMIZ1 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"ZMIZ1 WILD-TYPE" "ZMIZ1 WILD-TYPE" "ZMIZ1 WILD-TYPE" "ZMIZ1 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"ZMIZ1 WILD-TYPE" "ZMIZ1 WILD-TYPE" "ZMIZ1 WILD-TYPE" "ZMIZ1 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"ZMIZ1 WILD-TYPE" "ZMIZ1 WILD-TYPE" "ZMIZ1 WILD-TYPE" "ZMIZ1 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"ZMIZ1 WILD-TYPE"   "ZMIZ1 MUTATED"   "ZMIZ1 MUTATED" "ZMIZ1 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
  "ZMIZ1 MUTATED"   "ZMIZ1 MUTATED" "ZMIZ1 WILD-TYPE" "ZMIZ1 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"ZMIZ1 WILD-TYPE" "ZMIZ1 WILD-TYPE" "ZMIZ1 WILD-TYPE" "ZMIZ1 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"ZMIZ1 WILD-TYPE"   "ZMIZ1 MUTATED" "ZMIZ1 WILD-TYPE" "ZMIZ1 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
  "ZMIZ1 MUTATED" "ZMIZ1 WILD-TYPE" "ZMIZ1 WILD-TYPE" "ZMIZ1 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"ZMIZ1 WILD-TYPE"   "ZMIZ1 MUTATED" "ZMIZ1 WILD-TYPE"   "ZMIZ1 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"ZMIZ1 WILD-TYPE"   "ZMIZ1 MUTATED" "ZMIZ1 WILD-TYPE" "ZMIZ1 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"ZMIZ1 WILD-TYPE" "ZMIZ1 WILD-TYPE" "ZMIZ1 WILD-TYPE" "ZMIZ1 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
  "ZMIZ1 MUTATED"   "ZMIZ1 MUTATED"   "ZMIZ1 MUTATED" "ZMIZ1 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"ZMIZ1 WILD-TYPE" "ZMIZ1 WILD-TYPE" "ZMIZ1 WILD-TYPE" "ZMIZ1 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"ZMIZ1 WILD-TYPE" "ZMIZ1 WILD-TYPE"   "ZMIZ1 MUTATED" "ZMIZ1 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
  "ZMIZ1 MUTATED" "ZMIZ1 WILD-TYPE" "ZMIZ1 WILD-TYPE" "ZMIZ1 WILD-TYPE" 
     TCGA-US-A77J 
"ZMIZ1 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
  "ZMIZ1 MUTATED"   "ZMIZ1 MUTATED" "ZMIZ1 WILD-TYPE" "ZMIZ1 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"ZMIZ1 WILD-TYPE" "ZMIZ1 WILD-TYPE" "ZMIZ1 WILD-TYPE" "ZMIZ1 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"ZMIZ1 WILD-TYPE" "ZMIZ1 WILD-TYPE" "ZMIZ1 WILD-TYPE" "ZMIZ1 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"ZMIZ1 WILD-TYPE" "ZMIZ1 WILD-TYPE" "ZMIZ1 WILD-TYPE" "ZMIZ1 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"ZMIZ1 WILD-TYPE" "ZMIZ1 WILD-TYPE" "ZMIZ1 WILD-TYPE" "ZMIZ1 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"ZMIZ1 WILD-TYPE"   "ZMIZ1 MUTATED"   "ZMIZ1 MUTATED" "ZMIZ1 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
  "ZMIZ1 MUTATED"   "ZMIZ1 MUTATED" "ZMIZ1 WILD-TYPE" "ZMIZ1 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"ZMIZ1 WILD-TYPE" "ZMIZ1 WILD-TYPE" "ZMIZ1 WILD-TYPE" "ZMIZ1 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"ZMIZ1 WILD-TYPE"   "ZMIZ1 MUTATED" "ZMIZ1 WILD-TYPE" "ZMIZ1 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
  "ZMIZ1 MUTATED" "ZMIZ1 WILD-TYPE" "ZMIZ1 WILD-TYPE" "ZMIZ1 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"ZMIZ1 WILD-TYPE"   "ZMIZ1 MUTATED" "ZMIZ1 WILD-TYPE"   "ZMIZ1 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"ZMIZ1 WILD-TYPE"   "ZMIZ1 MUTATED" "ZMIZ1 WILD-TYPE" "ZMIZ1 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"ZMIZ1 WILD-TYPE" "ZMIZ1 WILD-TYPE" "ZMIZ1 WILD-TYPE" "ZMIZ1 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
  "ZMIZ1 MUTATED"   "ZMIZ1 MUTATED"   "ZMIZ1 MUTATED" "ZMIZ1 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"ZMIZ1 WILD-TYPE" "ZMIZ1 WILD-TYPE" "ZMIZ1 WILD-TYPE" "ZMIZ1 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"ZMIZ1 WILD-TYPE" "ZMIZ1 WILD-TYPE"   "ZMIZ1 MUTATED" "ZMIZ1 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
  "ZMIZ1 MUTATED" "ZMIZ1 WILD-TYPE" "ZMIZ1 WILD-TYPE" "ZMIZ1 WILD-TYPE" 
     TCGA-US-A77J 
"ZMIZ1 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
  "ZMIZ1 MUTATED"   "ZMIZ1 MUTATED" "ZMIZ1 WILD-TYPE" "ZMIZ1 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"ZMIZ1 WILD-TYPE" "ZMIZ1 WILD-TYPE" "ZMIZ1 WILD-TYPE" "ZMIZ1 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"ZMIZ1 WILD-TYPE" "ZMIZ1 WILD-TYPE" "ZMIZ1 WILD-TYPE" "ZMIZ1 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"ZMIZ1 WILD-TYPE" "ZMIZ1 WILD-TYPE" "ZMIZ1 WILD-TYPE" "ZMIZ1 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"ZMIZ1 WILD-TYPE" "ZMIZ1 WILD-TYPE" "ZMIZ1 WILD-TYPE" "ZMIZ1 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"ZMIZ1 WILD-TYPE"   "ZMIZ1 MUTATED"   "ZMIZ1 MUTATED" "ZMIZ1 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
  "ZMIZ1 MUTATED"   "ZMIZ1 MUTATED" "ZMIZ1 WILD-TYPE" "ZMIZ1 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"ZMIZ1 WILD-TYPE" "ZMIZ1 WILD-TYPE" "ZMIZ1 WILD-TYPE" "ZMIZ1 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"ZMIZ1 WILD-TYPE"   "ZMIZ1 MUTATED" "ZMIZ1 WILD-TYPE" "ZMIZ1 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
  "ZMIZ1 MUTATED" "ZMIZ1 WILD-TYPE" "ZMIZ1 WILD-TYPE" "ZMIZ1 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"ZMIZ1 WILD-TYPE"   "ZMIZ1 MUTATED" "ZMIZ1 WILD-TYPE"   "ZMIZ1 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"ZMIZ1 WILD-TYPE"   "ZMIZ1 MUTATED" "ZMIZ1 WILD-TYPE" "ZMIZ1 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"ZMIZ1 WILD-TYPE" "ZMIZ1 WILD-TYPE" "ZMIZ1 WILD-TYPE" "ZMIZ1 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
  "ZMIZ1 MUTATED"   "ZMIZ1 MUTATED"   "ZMIZ1 MUTATED" "ZMIZ1 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"ZMIZ1 WILD-TYPE" "ZMIZ1 WILD-TYPE" "ZMIZ1 WILD-TYPE" "ZMIZ1 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"ZMIZ1 WILD-TYPE" "ZMIZ1 WILD-TYPE"   "ZMIZ1 MUTATED" "ZMIZ1 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
  "ZMIZ1 MUTATED" "ZMIZ1 WILD-TYPE" "ZMIZ1 WILD-TYPE" "ZMIZ1 WILD-TYPE" 
     TCGA-US-A77J 
"ZMIZ1 WILD-TYPE" 
[1] "hr=" "1.4"
D131V2, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  ZMIZ1 MUTATED          1        0         2        12         1        0
  ZMIZ1 WILD-TYPE        0        4         9        39         1        3
D131V3, multiclass
                 vv
clus              T1+T2 T3+T4
  ZMIZ1 MUTATED       1    15
  ZMIZ1 WILD-TYPE     5    51
D131V4, multiclass
       clus
vv      ZMIZ1 MUTATED ZMIZ1 WILD-TYPE
  T1+T2             1               5
  T3+T4            15              51
D131V5, binary
                 cls
clus               0  1
  ZMIZ1 MUTATED    3 13
  ZMIZ1 WILD-TYPE 14 41
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ZMIZ1 MUTATED      3   13
  ZMIZ1 WILD-TYPE   14   41
   clus
vv  ZMIZ1 MUTATED ZMIZ1 WILD-TYPE
  0             3              14
  1            13              41
                 vv
clus              M0 M1 MX
  ZMIZ1 MUTATED    8  0  8
  ZMIZ1 WILD-TYPE 31  3 22
D131V6, multiclass
    clus
vv   ZMIZ1 MUTATED ZMIZ1 WILD-TYPE
  M0             8              31
  M1             0               3
  MX             8              22
D131V7, binary
                 cls
clus               0  1
  ZMIZ1 MUTATED    9  7
  ZMIZ1 WILD-TYPE 27 29
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ZMIZ1 MUTATED      9    7
  ZMIZ1 WILD-TYPE   27   29
        clus
vv       ZMIZ1 MUTATED ZMIZ1 WILD-TYPE
  FEMALE             9              27
  MALE               7              29
                 vv
clus              PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  ZMIZ1 MUTATED                                    14
  ZMIZ1 WILD-TYPE                                  51
                 vv
clus              PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  ZMIZ1 MUTATED                                       0
  ZMIZ1 WILD-TYPE                                     4
                 vv
clus              PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  ZMIZ1 MUTATED                                                  1
  ZMIZ1 WILD-TYPE                                                1
D131V8, multiclass
                                                  clus
vv                                                 ZMIZ1 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                         14
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                        0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA             1
                                                  clus
vv                                                 ZMIZ1 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                           51
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                          4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA               1
D131V9, continuous
D131V10, continuous
                 vv
clus              R0 R1 RX
  ZMIZ1 MUTATED   10  4  1
  ZMIZ1 WILD-TYPE 32 20  1
D131V11, multiclass
    clus
vv   ZMIZ1 MUTATED ZMIZ1 WILD-TYPE
  R0            10              32
  R1             4              20
  RX             1               1
D131V12, continuous

Clustering(132) Variable = ESCO2 MUTATION ANALYSIS
D132V1, survival
                 sevent
clus2              0  1
  ESCO2 MUTATED    7  1
  ESCO2 WILD-TYPE 33 28
  ESCO2 MUTATED ESCO2 WILD-TYPE 
              8              61 
  ESCO2 MUTATED ESCO2 WILD-TYPE 
              1              28 
$`ESCO2 MUTATED`
TCGA-F2-6880 TCGA-F2-7276 TCGA-F2-A44H TCGA-FB-A545 TCGA-HZ-7919 TCGA-HZ-A4BK 
        9.70         7.10        19.27        12.66         0.66         1.51 
TCGA-IB-7891 TCGA-IB-A5ST 
       16.04         0.26 

$`ESCO2 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-7273 TCGA-F2-A44G TCGA-FB-A4P5 TCGA-FB-A4P6 TCGA-FB-A5VM 
       10.98        11.84         5.03         0.13        11.93         2.47 
TCGA-FB-A78T TCGA-FB-A7DR TCGA-FZ-5920 TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 
        0.03         5.46         2.01        36.20        20.81        12.89 
TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-7922 TCGA-HZ-7923 
        7.66        13.02         7.89         0.92         0.13         0.26 
TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 
       12.13        11.87         0.26         0.62         0.79         0.69 
TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G 
        3.95         0.92         0.53         0.16         2.99         0.76 
TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 
        0.95         6.38        11.41        49.38         4.77        21.90 
TCGA-IB-7649 TCGA-IB-7651 TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 
       15.35        19.82        15.65        27.98         4.04         3.62 
TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-8126 
       43.79        15.81        19.66         3.85        15.98         0.56 
TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A6UG 
       17.16        10.82         9.86         7.20        15.12         1.35 
TCGA-LB-A7SX TCGA-OE-A75W TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E 
        4.18         3.62         8.12        13.68        16.80        14.14 
TCGA-US-A77J 
       18.67 

  ESCO2 MUTATED ESCO2 WILD-TYPE 
           0.26            0.03 
  ESCO2 MUTATED ESCO2 WILD-TYPE 
          19.27           49.38 
  ESCO2 MUTATED ESCO2 WILD-TYPE 
           8.40            7.66 
[1] "0.3 - 19.3 (8.4)" "0.0 - 49.4 (7.7)"
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"ESCO2 WILD-TYPE"   "ESCO2 MUTATED" "ESCO2 WILD-TYPE"   "ESCO2 MUTATED" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"ESCO2 WILD-TYPE"   "ESCO2 MUTATED" "ESCO2 WILD-TYPE" "ESCO2 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
  "ESCO2 MUTATED" "ESCO2 WILD-TYPE" "ESCO2 WILD-TYPE" "ESCO2 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"ESCO2 WILD-TYPE" "ESCO2 WILD-TYPE" "ESCO2 WILD-TYPE" "ESCO2 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"ESCO2 WILD-TYPE" "ESCO2 WILD-TYPE" "ESCO2 WILD-TYPE" "ESCO2 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
  "ESCO2 MUTATED" "ESCO2 WILD-TYPE" "ESCO2 WILD-TYPE" "ESCO2 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"ESCO2 WILD-TYPE" "ESCO2 WILD-TYPE" "ESCO2 WILD-TYPE" "ESCO2 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"ESCO2 WILD-TYPE" "ESCO2 WILD-TYPE" "ESCO2 WILD-TYPE" "ESCO2 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"ESCO2 WILD-TYPE" "ESCO2 WILD-TYPE" "ESCO2 WILD-TYPE" "ESCO2 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"ESCO2 WILD-TYPE"   "ESCO2 MUTATED" "ESCO2 WILD-TYPE" "ESCO2 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"ESCO2 WILD-TYPE" "ESCO2 WILD-TYPE" "ESCO2 WILD-TYPE" "ESCO2 WILD-TYPE" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"ESCO2 WILD-TYPE" "ESCO2 WILD-TYPE" "ESCO2 WILD-TYPE" "ESCO2 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"ESCO2 WILD-TYPE" "ESCO2 WILD-TYPE" "ESCO2 WILD-TYPE"   "ESCO2 MUTATED" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"ESCO2 WILD-TYPE" "ESCO2 WILD-TYPE" "ESCO2 WILD-TYPE" "ESCO2 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"ESCO2 WILD-TYPE" "ESCO2 WILD-TYPE" "ESCO2 WILD-TYPE" "ESCO2 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
  "ESCO2 MUTATED" "ESCO2 WILD-TYPE" "ESCO2 WILD-TYPE" "ESCO2 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"ESCO2 WILD-TYPE" "ESCO2 WILD-TYPE" "ESCO2 WILD-TYPE" "ESCO2 WILD-TYPE" 
     TCGA-US-A77J 
"ESCO2 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"ESCO2 WILD-TYPE"   "ESCO2 MUTATED" "ESCO2 WILD-TYPE"   "ESCO2 MUTATED" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"ESCO2 WILD-TYPE"   "ESCO2 MUTATED" "ESCO2 WILD-TYPE" "ESCO2 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
  "ESCO2 MUTATED" "ESCO2 WILD-TYPE" "ESCO2 WILD-TYPE" "ESCO2 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"ESCO2 WILD-TYPE" "ESCO2 WILD-TYPE" "ESCO2 WILD-TYPE" "ESCO2 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"ESCO2 WILD-TYPE" "ESCO2 WILD-TYPE" "ESCO2 WILD-TYPE" "ESCO2 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
  "ESCO2 MUTATED" "ESCO2 WILD-TYPE" "ESCO2 WILD-TYPE" "ESCO2 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"ESCO2 WILD-TYPE" "ESCO2 WILD-TYPE" "ESCO2 WILD-TYPE" "ESCO2 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"ESCO2 WILD-TYPE" "ESCO2 WILD-TYPE" "ESCO2 WILD-TYPE" "ESCO2 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"ESCO2 WILD-TYPE" "ESCO2 WILD-TYPE" "ESCO2 WILD-TYPE" "ESCO2 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"ESCO2 WILD-TYPE"   "ESCO2 MUTATED" "ESCO2 WILD-TYPE" "ESCO2 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"ESCO2 WILD-TYPE" "ESCO2 WILD-TYPE" "ESCO2 WILD-TYPE" "ESCO2 WILD-TYPE" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"ESCO2 WILD-TYPE" "ESCO2 WILD-TYPE" "ESCO2 WILD-TYPE" "ESCO2 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"ESCO2 WILD-TYPE" "ESCO2 WILD-TYPE" "ESCO2 WILD-TYPE"   "ESCO2 MUTATED" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"ESCO2 WILD-TYPE" "ESCO2 WILD-TYPE" "ESCO2 WILD-TYPE" "ESCO2 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"ESCO2 WILD-TYPE" "ESCO2 WILD-TYPE" "ESCO2 WILD-TYPE" "ESCO2 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
  "ESCO2 MUTATED" "ESCO2 WILD-TYPE" "ESCO2 WILD-TYPE" "ESCO2 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"ESCO2 WILD-TYPE" "ESCO2 WILD-TYPE" "ESCO2 WILD-TYPE" "ESCO2 WILD-TYPE" 
     TCGA-US-A77J 
"ESCO2 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"ESCO2 WILD-TYPE"   "ESCO2 MUTATED" "ESCO2 WILD-TYPE"   "ESCO2 MUTATED" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"ESCO2 WILD-TYPE"   "ESCO2 MUTATED" "ESCO2 WILD-TYPE" "ESCO2 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
  "ESCO2 MUTATED" "ESCO2 WILD-TYPE" "ESCO2 WILD-TYPE" "ESCO2 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"ESCO2 WILD-TYPE" "ESCO2 WILD-TYPE" "ESCO2 WILD-TYPE" "ESCO2 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"ESCO2 WILD-TYPE" "ESCO2 WILD-TYPE" "ESCO2 WILD-TYPE" "ESCO2 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
  "ESCO2 MUTATED" "ESCO2 WILD-TYPE" "ESCO2 WILD-TYPE" "ESCO2 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"ESCO2 WILD-TYPE" "ESCO2 WILD-TYPE" "ESCO2 WILD-TYPE" "ESCO2 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"ESCO2 WILD-TYPE" "ESCO2 WILD-TYPE" "ESCO2 WILD-TYPE" "ESCO2 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"ESCO2 WILD-TYPE" "ESCO2 WILD-TYPE" "ESCO2 WILD-TYPE" "ESCO2 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"ESCO2 WILD-TYPE"   "ESCO2 MUTATED" "ESCO2 WILD-TYPE" "ESCO2 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"ESCO2 WILD-TYPE" "ESCO2 WILD-TYPE" "ESCO2 WILD-TYPE" "ESCO2 WILD-TYPE" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"ESCO2 WILD-TYPE" "ESCO2 WILD-TYPE" "ESCO2 WILD-TYPE" "ESCO2 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"ESCO2 WILD-TYPE" "ESCO2 WILD-TYPE" "ESCO2 WILD-TYPE"   "ESCO2 MUTATED" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"ESCO2 WILD-TYPE" "ESCO2 WILD-TYPE" "ESCO2 WILD-TYPE" "ESCO2 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"ESCO2 WILD-TYPE" "ESCO2 WILD-TYPE" "ESCO2 WILD-TYPE" "ESCO2 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
  "ESCO2 MUTATED" "ESCO2 WILD-TYPE" "ESCO2 WILD-TYPE" "ESCO2 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"ESCO2 WILD-TYPE" "ESCO2 WILD-TYPE" "ESCO2 WILD-TYPE" "ESCO2 WILD-TYPE" 
     TCGA-US-A77J 
"ESCO2 WILD-TYPE" 
[1] "hr=" "2.7"
D132V2, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  ESCO2 MUTATED          0        0         1         7         0        0
  ESCO2 WILD-TYPE        1        4        10        44         2        3
D132V3, multiclass
                 vv
clus              T1+T2 T3+T4
  ESCO2 MUTATED       0     8
  ESCO2 WILD-TYPE     6    58
D132V4, multiclass
       clus
vv      ESCO2 MUTATED ESCO2 WILD-TYPE
  T1+T2             0               6
  T3+T4             8              58
D132V5, binary
                 cls
clus               0  1
  ESCO2 MUTATED    1  7
  ESCO2 WILD-TYPE 16 47
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ESCO2 MUTATED      1    7
  ESCO2 WILD-TYPE   16   47
   clus
vv  ESCO2 MUTATED ESCO2 WILD-TYPE
  0             1              16
  1             7              47
                 vv
clus              M0 M1 MX
  ESCO2 MUTATED    7  0  1
  ESCO2 WILD-TYPE 32  3 29
D132V6, multiclass
    clus
vv   ESCO2 MUTATED ESCO2 WILD-TYPE
  M0             7              32
  M1             0               3
  MX             1              29
D132V7, binary
                 cls
clus               0  1
  ESCO2 MUTATED    3  5
  ESCO2 WILD-TYPE 33 31
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ESCO2 MUTATED      3    5
  ESCO2 WILD-TYPE   33   31
        clus
vv       ESCO2 MUTATED ESCO2 WILD-TYPE
  FEMALE             3              33
  MALE               5              31
                 vv
clus              PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  ESCO2 MUTATED                                     7
  ESCO2 WILD-TYPE                                  58
                 vv
clus              PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  ESCO2 MUTATED                                       1
  ESCO2 WILD-TYPE                                     3
                 vv
clus              PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  ESCO2 MUTATED                                                  0
  ESCO2 WILD-TYPE                                                2
D132V8, multiclass
                                                  clus
vv                                                 ESCO2 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                          7
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                        1
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA             0
                                                  clus
vv                                                 ESCO2 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                           58
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                          3
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA               2
D132V9, continuous
[1] "Remove cluster labels:" "ESCO2 MUTATED"         
clus
  ESCO2 MUTATED ESCO2 WILD-TYPE 
              2              20 
     TCGA-FB-A4P5      TCGA-FB-A4P6      TCGA-FB-A5VM      TCGA-FB-A78T 
"ESCO2 WILD-TYPE" "ESCO2 WILD-TYPE" "ESCO2 WILD-TYPE" "ESCO2 WILD-TYPE" 
     TCGA-FB-A7DR      TCGA-H6-8124      TCGA-H6-A45N      TCGA-H8-A6C1 
"ESCO2 WILD-TYPE" "ESCO2 WILD-TYPE" "ESCO2 WILD-TYPE" "ESCO2 WILD-TYPE" 
     TCGA-IB-7644      TCGA-IB-7649      TCGA-IB-7651      TCGA-IB-7885 
"ESCO2 WILD-TYPE" "ESCO2 WILD-TYPE" "ESCO2 WILD-TYPE" "ESCO2 WILD-TYPE" 
     TCGA-IB-7886      TCGA-IB-7887      TCGA-IB-8126      TCGA-IB-8127 
"ESCO2 WILD-TYPE" "ESCO2 WILD-TYPE" "ESCO2 WILD-TYPE" "ESCO2 WILD-TYPE" 
     TCGA-IB-A5SS      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"ESCO2 WILD-TYPE" "ESCO2 WILD-TYPE" "ESCO2 WILD-TYPE" "ESCO2 WILD-TYPE" 
D132V10, continuous
[1] "Remove cluster labels:" "ESCO2 MUTATED"         
clus
  ESCO2 MUTATED ESCO2 WILD-TYPE 
              1              18 
     TCGA-FB-A4P5      TCGA-FB-A4P6      TCGA-FB-A5VM      TCGA-FB-A78T 
"ESCO2 WILD-TYPE" "ESCO2 WILD-TYPE" "ESCO2 WILD-TYPE" "ESCO2 WILD-TYPE" 
     TCGA-FB-A7DR      TCGA-H6-8124      TCGA-H8-A6C1      TCGA-IB-7644 
"ESCO2 WILD-TYPE" "ESCO2 WILD-TYPE" "ESCO2 WILD-TYPE" "ESCO2 WILD-TYPE" 
     TCGA-IB-7649      TCGA-IB-7651      TCGA-IB-7885      TCGA-IB-7886 
"ESCO2 WILD-TYPE" "ESCO2 WILD-TYPE" "ESCO2 WILD-TYPE" "ESCO2 WILD-TYPE" 
     TCGA-IB-8126      TCGA-IB-8127      TCGA-IB-A5SS      TCGA-IB-A6UG 
"ESCO2 WILD-TYPE" "ESCO2 WILD-TYPE" "ESCO2 WILD-TYPE" "ESCO2 WILD-TYPE" 
     TCGA-LB-A7SX      TCGA-OE-A75W 
"ESCO2 WILD-TYPE" "ESCO2 WILD-TYPE" 
                 vv
clus              R0 R1 RX
  ESCO2 MUTATED    5  2  0
  ESCO2 WILD-TYPE 37 22  2
D132V11, multiclass
    clus
vv   ESCO2 MUTATED ESCO2 WILD-TYPE
  R0             5              37
  R1             2              22
  RX             0               2
D132V12, continuous

Clustering(133) Variable = CTRL MUTATION ANALYSIS
D133V1, survival
                sevent
clus2             0  1
  CTRL MUTATED    5  1
  CTRL WILD-TYPE 35 28
  CTRL MUTATED CTRL WILD-TYPE 
             6             63 
  CTRL MUTATED CTRL WILD-TYPE 
             1             28 
$`CTRL MUTATED`
TCGA-F2-A44H TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-A4BH TCGA-IB-7651 
       19.27         0.26        12.13        11.87         6.38        19.82 

$`CTRL WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-FB-A4P5 
       10.98         9.70        11.84         7.10         5.03         0.13 
TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR TCGA-FZ-5920 
       11.93        12.66         2.47         0.03         5.46         2.01 
TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7289 
       36.20        20.81        12.89         7.66        13.02         7.89 
TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 
        0.92         0.66         0.13         0.26         0.62         0.79 
TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8636 TCGA-HZ-8638 
        0.69         3.95         0.92         0.53         0.16         2.99 
TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7646 
        0.76         0.95         1.51        11.41        49.38         4.77 
TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 
       21.90        15.35        15.65        27.98         4.04         3.62 
TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-7897 
       43.79        15.81        19.66        16.04         3.85        15.98 
TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS 
        0.56        17.16        10.82         9.86         7.20        15.12 
TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W TCGA-PZ-A5RE TCGA-Q3-A5QY 
        0.26         1.35         4.18         3.62         8.12        13.68 
TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
       16.80        14.14        18.67 

  CTRL MUTATED CTRL WILD-TYPE 
          0.26           0.03 
  CTRL MUTATED CTRL WILD-TYPE 
         19.82          49.38 
  CTRL MUTATED CTRL WILD-TYPE 
          12.0            7.2 
[1] "0.3 - 19.8 (12.0)" "0.0 - 49.4 (7.2)" 
    TCGA-F2-6879     TCGA-F2-6880     TCGA-F2-7273     TCGA-F2-7276 
"CTRL WILD-TYPE" "CTRL WILD-TYPE" "CTRL WILD-TYPE" "CTRL WILD-TYPE" 
    TCGA-F2-A44G     TCGA-F2-A44H     TCGA-FB-A4P5     TCGA-FB-A4P6 
"CTRL WILD-TYPE"   "CTRL MUTATED" "CTRL WILD-TYPE" "CTRL WILD-TYPE" 
    TCGA-FB-A545     TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-FB-A7DR 
"CTRL WILD-TYPE" "CTRL WILD-TYPE" "CTRL WILD-TYPE" "CTRL WILD-TYPE" 
    TCGA-FZ-5920     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-H6-8124 
"CTRL WILD-TYPE" "CTRL WILD-TYPE" "CTRL WILD-TYPE" "CTRL WILD-TYPE" 
    TCGA-H6-A45N     TCGA-H8-A6C1     TCGA-HZ-7289     TCGA-HZ-7918 
"CTRL WILD-TYPE" "CTRL WILD-TYPE" "CTRL WILD-TYPE" "CTRL WILD-TYPE" 
    TCGA-HZ-7919     TCGA-HZ-7922     TCGA-HZ-7923     TCGA-HZ-7924 
"CTRL WILD-TYPE" "CTRL WILD-TYPE"   "CTRL MUTATED"   "CTRL MUTATED" 
    TCGA-HZ-7925     TCGA-HZ-7926     TCGA-HZ-8001     TCGA-HZ-8002 
  "CTRL MUTATED" "CTRL WILD-TYPE" "CTRL WILD-TYPE" "CTRL WILD-TYPE" 
    TCGA-HZ-8003     TCGA-HZ-8005     TCGA-HZ-8315     TCGA-HZ-8317 
"CTRL WILD-TYPE" "CTRL WILD-TYPE" "CTRL WILD-TYPE" "CTRL WILD-TYPE" 
    TCGA-HZ-8636     TCGA-HZ-8638     TCGA-HZ-A49G     TCGA-HZ-A49H 
"CTRL WILD-TYPE" "CTRL WILD-TYPE" "CTRL WILD-TYPE" "CTRL WILD-TYPE" 
    TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-IB-7644     TCGA-IB-7645 
  "CTRL MUTATED" "CTRL WILD-TYPE" "CTRL WILD-TYPE" "CTRL WILD-TYPE" 
    TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7651 
"CTRL WILD-TYPE" "CTRL WILD-TYPE" "CTRL WILD-TYPE"   "CTRL MUTATED" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887 
"CTRL WILD-TYPE" "CTRL WILD-TYPE" "CTRL WILD-TYPE" "CTRL WILD-TYPE" 
    TCGA-IB-7888     TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891 
"CTRL WILD-TYPE" "CTRL WILD-TYPE" "CTRL WILD-TYPE" "CTRL WILD-TYPE" 
    TCGA-IB-7893     TCGA-IB-7897     TCGA-IB-8126     TCGA-IB-8127 
"CTRL WILD-TYPE" "CTRL WILD-TYPE" "CTRL WILD-TYPE" "CTRL WILD-TYPE" 
    TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS 
"CTRL WILD-TYPE" "CTRL WILD-TYPE" "CTRL WILD-TYPE" "CTRL WILD-TYPE" 
    TCGA-IB-A5ST     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
"CTRL WILD-TYPE" "CTRL WILD-TYPE" "CTRL WILD-TYPE" "CTRL WILD-TYPE" 
    TCGA-PZ-A5RE     TCGA-Q3-A5QY     TCGA-US-A779     TCGA-US-A77E 
"CTRL WILD-TYPE" "CTRL WILD-TYPE" "CTRL WILD-TYPE" "CTRL WILD-TYPE" 
    TCGA-US-A77J 
"CTRL WILD-TYPE" 
    TCGA-F2-6879     TCGA-F2-6880     TCGA-F2-7273     TCGA-F2-7276 
"CTRL WILD-TYPE" "CTRL WILD-TYPE" "CTRL WILD-TYPE" "CTRL WILD-TYPE" 
    TCGA-F2-A44G     TCGA-F2-A44H     TCGA-FB-A4P5     TCGA-FB-A4P6 
"CTRL WILD-TYPE"   "CTRL MUTATED" "CTRL WILD-TYPE" "CTRL WILD-TYPE" 
    TCGA-FB-A545     TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-FB-A7DR 
"CTRL WILD-TYPE" "CTRL WILD-TYPE" "CTRL WILD-TYPE" "CTRL WILD-TYPE" 
    TCGA-FZ-5920     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-H6-8124 
"CTRL WILD-TYPE" "CTRL WILD-TYPE" "CTRL WILD-TYPE" "CTRL WILD-TYPE" 
    TCGA-H6-A45N     TCGA-H8-A6C1     TCGA-HZ-7289     TCGA-HZ-7918 
"CTRL WILD-TYPE" "CTRL WILD-TYPE" "CTRL WILD-TYPE" "CTRL WILD-TYPE" 
    TCGA-HZ-7919     TCGA-HZ-7922     TCGA-HZ-7923     TCGA-HZ-7924 
"CTRL WILD-TYPE" "CTRL WILD-TYPE"   "CTRL MUTATED"   "CTRL MUTATED" 
    TCGA-HZ-7925     TCGA-HZ-7926     TCGA-HZ-8001     TCGA-HZ-8002 
  "CTRL MUTATED" "CTRL WILD-TYPE" "CTRL WILD-TYPE" "CTRL WILD-TYPE" 
    TCGA-HZ-8003     TCGA-HZ-8005     TCGA-HZ-8315     TCGA-HZ-8317 
"CTRL WILD-TYPE" "CTRL WILD-TYPE" "CTRL WILD-TYPE" "CTRL WILD-TYPE" 
    TCGA-HZ-8636     TCGA-HZ-8638     TCGA-HZ-A49G     TCGA-HZ-A49H 
"CTRL WILD-TYPE" "CTRL WILD-TYPE" "CTRL WILD-TYPE" "CTRL WILD-TYPE" 
    TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-IB-7644     TCGA-IB-7645 
  "CTRL MUTATED" "CTRL WILD-TYPE" "CTRL WILD-TYPE" "CTRL WILD-TYPE" 
    TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7651 
"CTRL WILD-TYPE" "CTRL WILD-TYPE" "CTRL WILD-TYPE"   "CTRL MUTATED" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887 
"CTRL WILD-TYPE" "CTRL WILD-TYPE" "CTRL WILD-TYPE" "CTRL WILD-TYPE" 
    TCGA-IB-7888     TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891 
"CTRL WILD-TYPE" "CTRL WILD-TYPE" "CTRL WILD-TYPE" "CTRL WILD-TYPE" 
    TCGA-IB-7893     TCGA-IB-7897     TCGA-IB-8126     TCGA-IB-8127 
"CTRL WILD-TYPE" "CTRL WILD-TYPE" "CTRL WILD-TYPE" "CTRL WILD-TYPE" 
    TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS 
"CTRL WILD-TYPE" "CTRL WILD-TYPE" "CTRL WILD-TYPE" "CTRL WILD-TYPE" 
    TCGA-IB-A5ST     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
"CTRL WILD-TYPE" "CTRL WILD-TYPE" "CTRL WILD-TYPE" "CTRL WILD-TYPE" 
    TCGA-PZ-A5RE     TCGA-Q3-A5QY     TCGA-US-A779     TCGA-US-A77E 
"CTRL WILD-TYPE" "CTRL WILD-TYPE" "CTRL WILD-TYPE" "CTRL WILD-TYPE" 
    TCGA-US-A77J 
"CTRL WILD-TYPE" 
    TCGA-F2-6879     TCGA-F2-6880     TCGA-F2-7273     TCGA-F2-7276 
"CTRL WILD-TYPE" "CTRL WILD-TYPE" "CTRL WILD-TYPE" "CTRL WILD-TYPE" 
    TCGA-F2-A44G     TCGA-F2-A44H     TCGA-FB-A4P5     TCGA-FB-A4P6 
"CTRL WILD-TYPE"   "CTRL MUTATED" "CTRL WILD-TYPE" "CTRL WILD-TYPE" 
    TCGA-FB-A545     TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-FB-A7DR 
"CTRL WILD-TYPE" "CTRL WILD-TYPE" "CTRL WILD-TYPE" "CTRL WILD-TYPE" 
    TCGA-FZ-5920     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-H6-8124 
"CTRL WILD-TYPE" "CTRL WILD-TYPE" "CTRL WILD-TYPE" "CTRL WILD-TYPE" 
    TCGA-H6-A45N     TCGA-H8-A6C1     TCGA-HZ-7289     TCGA-HZ-7918 
"CTRL WILD-TYPE" "CTRL WILD-TYPE" "CTRL WILD-TYPE" "CTRL WILD-TYPE" 
    TCGA-HZ-7919     TCGA-HZ-7922     TCGA-HZ-7923     TCGA-HZ-7924 
"CTRL WILD-TYPE" "CTRL WILD-TYPE"   "CTRL MUTATED"   "CTRL MUTATED" 
    TCGA-HZ-7925     TCGA-HZ-7926     TCGA-HZ-8001     TCGA-HZ-8002 
  "CTRL MUTATED" "CTRL WILD-TYPE" "CTRL WILD-TYPE" "CTRL WILD-TYPE" 
    TCGA-HZ-8003     TCGA-HZ-8005     TCGA-HZ-8315     TCGA-HZ-8317 
"CTRL WILD-TYPE" "CTRL WILD-TYPE" "CTRL WILD-TYPE" "CTRL WILD-TYPE" 
    TCGA-HZ-8636     TCGA-HZ-8638     TCGA-HZ-A49G     TCGA-HZ-A49H 
"CTRL WILD-TYPE" "CTRL WILD-TYPE" "CTRL WILD-TYPE" "CTRL WILD-TYPE" 
    TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-IB-7644     TCGA-IB-7645 
  "CTRL MUTATED" "CTRL WILD-TYPE" "CTRL WILD-TYPE" "CTRL WILD-TYPE" 
    TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7651 
"CTRL WILD-TYPE" "CTRL WILD-TYPE" "CTRL WILD-TYPE"   "CTRL MUTATED" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887 
"CTRL WILD-TYPE" "CTRL WILD-TYPE" "CTRL WILD-TYPE" "CTRL WILD-TYPE" 
    TCGA-IB-7888     TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891 
"CTRL WILD-TYPE" "CTRL WILD-TYPE" "CTRL WILD-TYPE" "CTRL WILD-TYPE" 
    TCGA-IB-7893     TCGA-IB-7897     TCGA-IB-8126     TCGA-IB-8127 
"CTRL WILD-TYPE" "CTRL WILD-TYPE" "CTRL WILD-TYPE" "CTRL WILD-TYPE" 
    TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS 
"CTRL WILD-TYPE" "CTRL WILD-TYPE" "CTRL WILD-TYPE" "CTRL WILD-TYPE" 
    TCGA-IB-A5ST     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
"CTRL WILD-TYPE" "CTRL WILD-TYPE" "CTRL WILD-TYPE" "CTRL WILD-TYPE" 
    TCGA-PZ-A5RE     TCGA-Q3-A5QY     TCGA-US-A779     TCGA-US-A77E 
"CTRL WILD-TYPE" "CTRL WILD-TYPE" "CTRL WILD-TYPE" "CTRL WILD-TYPE" 
    TCGA-US-A77J 
"CTRL WILD-TYPE" 
[1] "hr=" "3.3"
D133V2, continuous
                vv
clus             STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  CTRL MUTATED          0        0         3         3         0        0
  CTRL WILD-TYPE        1        4         8        48         2        3
D133V3, multiclass
                vv
clus             T1+T2 T3+T4
  CTRL MUTATED       0     6
  CTRL WILD-TYPE     6    60
D133V4, multiclass
       clus
vv      CTRL MUTATED CTRL WILD-TYPE
  T1+T2            0              6
  T3+T4            6             60
D133V5, binary
                cls
clus              0  1
  CTRL MUTATED    3  3
  CTRL WILD-TYPE 14 51
[1] "tbl2"
                cls
clus             [,1] [,2]
  CTRL MUTATED      3    3
  CTRL WILD-TYPE   14   51
   clus
vv  CTRL MUTATED CTRL WILD-TYPE
  0            3             14
  1            3             51
                vv
clus             M0 M1 MX
  CTRL MUTATED    2  0  4
  CTRL WILD-TYPE 37  3 26
D133V6, multiclass
    clus
vv   CTRL MUTATED CTRL WILD-TYPE
  M0            2             37
  M1            0              3
  MX            4             26
D133V7, binary
                cls
clus              0  1
  CTRL MUTATED    2  4
  CTRL WILD-TYPE 34 32
[1] "tbl2"
                cls
clus             [,1] [,2]
  CTRL MUTATED      2    4
  CTRL WILD-TYPE   34   32
        clus
vv       CTRL MUTATED CTRL WILD-TYPE
  FEMALE            2             34
  MALE              4             32
                vv
clus             PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  CTRL MUTATED                                     6
  CTRL WILD-TYPE                                  59
                vv
clus             PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  CTRL MUTATED                                       0
  CTRL WILD-TYPE                                     4
                vv
clus             PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  CTRL MUTATED                                                  0
  CTRL WILD-TYPE                                                2
D133V8, multiclass
                                                  clus
vv                                                 CTRL MUTATED CTRL WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                         6             59
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                       0              4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA            0              2
D133V9, continuous
[1] "Remove cluster labels:" "CTRL MUTATED"          
clus
  CTRL MUTATED CTRL WILD-TYPE 
             1             21 
    TCGA-F2-6880     TCGA-FB-A4P5     TCGA-FB-A4P6     TCGA-FB-A5VM 
"CTRL WILD-TYPE" "CTRL WILD-TYPE" "CTRL WILD-TYPE" "CTRL WILD-TYPE" 
    TCGA-FB-A78T     TCGA-FB-A7DR     TCGA-H6-8124     TCGA-H6-A45N 
"CTRL WILD-TYPE" "CTRL WILD-TYPE" "CTRL WILD-TYPE" "CTRL WILD-TYPE" 
    TCGA-H8-A6C1     TCGA-IB-7644     TCGA-IB-7649     TCGA-IB-7885 
"CTRL WILD-TYPE" "CTRL WILD-TYPE" "CTRL WILD-TYPE" "CTRL WILD-TYPE" 
    TCGA-IB-7886     TCGA-IB-7887     TCGA-IB-7891     TCGA-IB-8126 
"CTRL WILD-TYPE" "CTRL WILD-TYPE" "CTRL WILD-TYPE" "CTRL WILD-TYPE" 
    TCGA-IB-8127     TCGA-IB-A5SS     TCGA-IB-A6UG     TCGA-LB-A7SX 
"CTRL WILD-TYPE" "CTRL WILD-TYPE" "CTRL WILD-TYPE" "CTRL WILD-TYPE" 
    TCGA-OE-A75W 
"CTRL WILD-TYPE" 
D133V10, continuous
[1] "Remove cluster labels:" "CTRL MUTATED"          
clus
  CTRL MUTATED CTRL WILD-TYPE 
             1             18 
    TCGA-FB-A4P5     TCGA-FB-A4P6     TCGA-FB-A5VM     TCGA-FB-A78T 
"CTRL WILD-TYPE" "CTRL WILD-TYPE" "CTRL WILD-TYPE" "CTRL WILD-TYPE" 
    TCGA-FB-A7DR     TCGA-H6-8124     TCGA-H8-A6C1     TCGA-IB-7644 
"CTRL WILD-TYPE" "CTRL WILD-TYPE" "CTRL WILD-TYPE" "CTRL WILD-TYPE" 
    TCGA-IB-7649     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7891 
"CTRL WILD-TYPE" "CTRL WILD-TYPE" "CTRL WILD-TYPE" "CTRL WILD-TYPE" 
    TCGA-IB-8126     TCGA-IB-8127     TCGA-IB-A5SS     TCGA-IB-A6UG 
"CTRL WILD-TYPE" "CTRL WILD-TYPE" "CTRL WILD-TYPE" "CTRL WILD-TYPE" 
    TCGA-LB-A7SX     TCGA-OE-A75W 
"CTRL WILD-TYPE" "CTRL WILD-TYPE" 
                vv
clus             R0 R1 RX
  CTRL MUTATED    5  1  0
  CTRL WILD-TYPE 37 23  2
D133V11, multiclass
    clus
vv   CTRL MUTATED CTRL WILD-TYPE
  R0            5             37
  R1            1             23
  RX            0              2
D133V12, continuous

Clustering(134) Variable = OTUD4 MUTATION ANALYSIS
D134V1, survival
                 sevent
clus2              0  1
  OTUD4 MUTATED   12  7
  OTUD4 WILD-TYPE 28 22
  OTUD4 MUTATED OTUD4 WILD-TYPE 
             19              50 
  OTUD4 MUTATED OTUD4 WILD-TYPE 
              7              22 
$`OTUD4 MUTATED`
TCGA-H6-8124 TCGA-H6-A45N TCGA-HZ-7919 TCGA-HZ-7923 TCGA-HZ-7925 TCGA-HZ-8001 
       12.89         7.66         0.66         0.26        11.87         0.62 
TCGA-HZ-8003 TCGA-HZ-8315 TCGA-HZ-A49G TCGA-HZ-A4BH TCGA-IB-7646 TCGA-IB-7649 
        0.69         0.92         0.76         6.38         4.77        15.35 
TCGA-IB-7651 TCGA-IB-7888 TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-A5SP TCGA-PZ-A5RE 
       19.82        43.79         3.85        15.98         9.86         8.12 
TCGA-Q3-A5QY 
       13.68 

$`OTUD4 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P5 TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR 
        0.13        11.93        12.66         2.47         0.03         5.46 
TCGA-FZ-5920 TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H8-A6C1 TCGA-HZ-7289 TCGA-HZ-7918 
        2.01        36.20        20.81        13.02         7.89         0.92 
TCGA-HZ-7922 TCGA-HZ-7924 TCGA-HZ-7926 TCGA-HZ-8002 TCGA-HZ-8005 TCGA-HZ-8317 
        0.13        12.13         0.26         0.79         3.95         0.53 
TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49H TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7645 
        0.16         2.99         0.95         1.51        11.41        49.38 
TCGA-IB-7647 TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7889 
       21.90        15.65        27.98         4.04         3.62        15.81 
TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SQ 
       19.66        16.04         0.56        17.16        10.82         7.20 
TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W TCGA-US-A779 
       15.12         0.26         1.35         4.18         3.62        16.80 
TCGA-US-A77E TCGA-US-A77J 
       14.14        18.67 

  OTUD4 MUTATED OTUD4 WILD-TYPE 
           0.26            0.03 
  OTUD4 MUTATED OTUD4 WILD-TYPE 
          43.79           49.38 
  OTUD4 MUTATED OTUD4 WILD-TYPE 
          7.660           7.545 
[1] "0.3 - 43.8 (7.7)" "0.0 - 49.4 (7.5)"
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"OTUD4 WILD-TYPE" "OTUD4 WILD-TYPE" "OTUD4 WILD-TYPE" "OTUD4 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"OTUD4 WILD-TYPE" "OTUD4 WILD-TYPE" "OTUD4 WILD-TYPE" "OTUD4 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"OTUD4 WILD-TYPE" "OTUD4 WILD-TYPE" "OTUD4 WILD-TYPE" "OTUD4 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"OTUD4 WILD-TYPE" "OTUD4 WILD-TYPE" "OTUD4 WILD-TYPE"   "OTUD4 MUTATED" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
  "OTUD4 MUTATED" "OTUD4 WILD-TYPE" "OTUD4 WILD-TYPE" "OTUD4 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
  "OTUD4 MUTATED" "OTUD4 WILD-TYPE"   "OTUD4 MUTATED" "OTUD4 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
  "OTUD4 MUTATED" "OTUD4 WILD-TYPE"   "OTUD4 MUTATED" "OTUD4 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
  "OTUD4 MUTATED" "OTUD4 WILD-TYPE"   "OTUD4 MUTATED" "OTUD4 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"OTUD4 WILD-TYPE" "OTUD4 WILD-TYPE"   "OTUD4 MUTATED" "OTUD4 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
  "OTUD4 MUTATED" "OTUD4 WILD-TYPE" "OTUD4 WILD-TYPE" "OTUD4 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
  "OTUD4 MUTATED" "OTUD4 WILD-TYPE"   "OTUD4 MUTATED"   "OTUD4 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"OTUD4 WILD-TYPE" "OTUD4 WILD-TYPE" "OTUD4 WILD-TYPE" "OTUD4 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
  "OTUD4 MUTATED" "OTUD4 WILD-TYPE" "OTUD4 WILD-TYPE" "OTUD4 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
  "OTUD4 MUTATED"   "OTUD4 MUTATED" "OTUD4 WILD-TYPE" "OTUD4 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"OTUD4 WILD-TYPE"   "OTUD4 MUTATED" "OTUD4 WILD-TYPE" "OTUD4 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"OTUD4 WILD-TYPE" "OTUD4 WILD-TYPE" "OTUD4 WILD-TYPE" "OTUD4 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
  "OTUD4 MUTATED"   "OTUD4 MUTATED" "OTUD4 WILD-TYPE" "OTUD4 WILD-TYPE" 
     TCGA-US-A77J 
"OTUD4 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"OTUD4 WILD-TYPE" "OTUD4 WILD-TYPE" "OTUD4 WILD-TYPE" "OTUD4 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"OTUD4 WILD-TYPE" "OTUD4 WILD-TYPE" "OTUD4 WILD-TYPE" "OTUD4 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"OTUD4 WILD-TYPE" "OTUD4 WILD-TYPE" "OTUD4 WILD-TYPE" "OTUD4 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"OTUD4 WILD-TYPE" "OTUD4 WILD-TYPE" "OTUD4 WILD-TYPE"   "OTUD4 MUTATED" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
  "OTUD4 MUTATED" "OTUD4 WILD-TYPE" "OTUD4 WILD-TYPE" "OTUD4 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
  "OTUD4 MUTATED" "OTUD4 WILD-TYPE"   "OTUD4 MUTATED" "OTUD4 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
  "OTUD4 MUTATED" "OTUD4 WILD-TYPE"   "OTUD4 MUTATED" "OTUD4 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
  "OTUD4 MUTATED" "OTUD4 WILD-TYPE"   "OTUD4 MUTATED" "OTUD4 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"OTUD4 WILD-TYPE" "OTUD4 WILD-TYPE"   "OTUD4 MUTATED" "OTUD4 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
  "OTUD4 MUTATED" "OTUD4 WILD-TYPE" "OTUD4 WILD-TYPE" "OTUD4 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
  "OTUD4 MUTATED" "OTUD4 WILD-TYPE"   "OTUD4 MUTATED"   "OTUD4 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"OTUD4 WILD-TYPE" "OTUD4 WILD-TYPE" "OTUD4 WILD-TYPE" "OTUD4 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
  "OTUD4 MUTATED" "OTUD4 WILD-TYPE" "OTUD4 WILD-TYPE" "OTUD4 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
  "OTUD4 MUTATED"   "OTUD4 MUTATED" "OTUD4 WILD-TYPE" "OTUD4 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"OTUD4 WILD-TYPE"   "OTUD4 MUTATED" "OTUD4 WILD-TYPE" "OTUD4 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"OTUD4 WILD-TYPE" "OTUD4 WILD-TYPE" "OTUD4 WILD-TYPE" "OTUD4 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
  "OTUD4 MUTATED"   "OTUD4 MUTATED" "OTUD4 WILD-TYPE" "OTUD4 WILD-TYPE" 
     TCGA-US-A77J 
"OTUD4 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"OTUD4 WILD-TYPE" "OTUD4 WILD-TYPE" "OTUD4 WILD-TYPE" "OTUD4 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"OTUD4 WILD-TYPE" "OTUD4 WILD-TYPE" "OTUD4 WILD-TYPE" "OTUD4 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"OTUD4 WILD-TYPE" "OTUD4 WILD-TYPE" "OTUD4 WILD-TYPE" "OTUD4 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"OTUD4 WILD-TYPE" "OTUD4 WILD-TYPE" "OTUD4 WILD-TYPE"   "OTUD4 MUTATED" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
  "OTUD4 MUTATED" "OTUD4 WILD-TYPE" "OTUD4 WILD-TYPE" "OTUD4 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
  "OTUD4 MUTATED" "OTUD4 WILD-TYPE"   "OTUD4 MUTATED" "OTUD4 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
  "OTUD4 MUTATED" "OTUD4 WILD-TYPE"   "OTUD4 MUTATED" "OTUD4 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
  "OTUD4 MUTATED" "OTUD4 WILD-TYPE"   "OTUD4 MUTATED" "OTUD4 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"OTUD4 WILD-TYPE" "OTUD4 WILD-TYPE"   "OTUD4 MUTATED" "OTUD4 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
  "OTUD4 MUTATED" "OTUD4 WILD-TYPE" "OTUD4 WILD-TYPE" "OTUD4 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
  "OTUD4 MUTATED" "OTUD4 WILD-TYPE"   "OTUD4 MUTATED"   "OTUD4 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"OTUD4 WILD-TYPE" "OTUD4 WILD-TYPE" "OTUD4 WILD-TYPE" "OTUD4 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
  "OTUD4 MUTATED" "OTUD4 WILD-TYPE" "OTUD4 WILD-TYPE" "OTUD4 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
  "OTUD4 MUTATED"   "OTUD4 MUTATED" "OTUD4 WILD-TYPE" "OTUD4 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"OTUD4 WILD-TYPE"   "OTUD4 MUTATED" "OTUD4 WILD-TYPE" "OTUD4 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"OTUD4 WILD-TYPE" "OTUD4 WILD-TYPE" "OTUD4 WILD-TYPE" "OTUD4 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
  "OTUD4 MUTATED"   "OTUD4 MUTATED" "OTUD4 WILD-TYPE" "OTUD4 WILD-TYPE" 
     TCGA-US-A77J 
"OTUD4 WILD-TYPE" 
[1] "hr=" "1"  
D134V2, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  OTUD4 MUTATED          0        0         5        13         1        0
  OTUD4 WILD-TYPE        1        4         6        38         1        3
D134V3, multiclass
                 vv
clus              T1+T2 T3+T4
  OTUD4 MUTATED       1    18
  OTUD4 WILD-TYPE     5    48
D134V4, multiclass
       clus
vv      OTUD4 MUTATED OTUD4 WILD-TYPE
  T1+T2             1               5
  T3+T4            18              48
D134V5, binary
                 cls
clus               0  1
  OTUD4 MUTATED    6 13
  OTUD4 WILD-TYPE 11 41
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OTUD4 MUTATED      6   13
  OTUD4 WILD-TYPE   11   41
   clus
vv  OTUD4 MUTATED OTUD4 WILD-TYPE
  0             6              11
  1            13              41
                 vv
clus              M0 M1 MX
  OTUD4 MUTATED    9  0 10
  OTUD4 WILD-TYPE 30  3 20
D134V6, multiclass
    clus
vv   OTUD4 MUTATED OTUD4 WILD-TYPE
  M0             9              30
  M1             0               3
  MX            10              20
D134V7, binary
                 cls
clus               0  1
  OTUD4 MUTATED   11  8
  OTUD4 WILD-TYPE 25 28
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OTUD4 MUTATED     11    8
  OTUD4 WILD-TYPE   25   28
        clus
vv       OTUD4 MUTATED OTUD4 WILD-TYPE
  FEMALE            11              25
  MALE               8              28
                 vv
clus              PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  OTUD4 MUTATED                                    18
  OTUD4 WILD-TYPE                                  47
                 vv
clus              PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  OTUD4 MUTATED                                       1
  OTUD4 WILD-TYPE                                     3
                 vv
clus              PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  OTUD4 MUTATED                                                  0
  OTUD4 WILD-TYPE                                                2
D134V8, multiclass
                                                  clus
vv                                                 OTUD4 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                         18
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                        1
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA             0
                                                  clus
vv                                                 OTUD4 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                           47
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                          3
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA               2
D134V9, continuous
D134V10, continuous
                 vv
clus              R0 R1 RX
  OTUD4 MUTATED   10  7  0
  OTUD4 WILD-TYPE 32 17  2
D134V11, multiclass
    clus
vv   OTUD4 MUTATED OTUD4 WILD-TYPE
  R0            10              32
  R1             7              17
  RX             0               2
D134V12, continuous

Clustering(135) Variable = QRICH1 MUTATION ANALYSIS
D135V1, survival
                  sevent
clus2               0  1
  QRICH1 MUTATED    8  7
  QRICH1 WILD-TYPE 32 22
  QRICH1 MUTATED QRICH1 WILD-TYPE 
              15               54 
  QRICH1 MUTATED QRICH1 WILD-TYPE 
               7               22 
$`QRICH1 MUTATED`
TCGA-FB-A4P5 TCGA-FB-A4P6 TCGA-H6-A45N TCGA-HZ-7922 TCGA-HZ-7924 TCGA-HZ-7926 
        0.13        11.93         7.66         0.13        12.13         0.26 
TCGA-HZ-8317 TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7649 TCGA-IB-7651 
        0.53         6.38         1.51        11.41        15.35        19.82 
TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7891 
       43.79        15.81        16.04 

$`QRICH1 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR TCGA-FZ-5920 TCGA-FZ-5922 
       12.66         2.47         0.03         5.46         2.01        36.20 
TCGA-FZ-5923 TCGA-H6-8124 TCGA-H8-A6C1 TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-7919 
       20.81        12.89        13.02         7.89         0.92         0.66 
TCGA-HZ-7923 TCGA-HZ-7925 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 
        0.26        11.87         0.62         0.79         0.69         3.95 
TCGA-HZ-8315 TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-IB-7645 
        0.92         0.16         2.99         0.76         0.95        49.38 
TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 
        4.77        21.90        15.65        27.98         4.04         3.62 
TCGA-IB-7890 TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO 
       19.66         3.85        15.98         0.56        17.16        10.82 
TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX 
        9.86         7.20        15.12         0.26         1.35         4.18 
TCGA-OE-A75W TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
        3.62         8.12        13.68        16.80        14.14        18.67 

  QRICH1 MUTATED QRICH1 WILD-TYPE 
            0.13             0.03 
  QRICH1 MUTATED QRICH1 WILD-TYPE 
           43.79            49.38 
  QRICH1 MUTATED QRICH1 WILD-TYPE 
           11.41             7.15 
[1] "0.1 - 43.8 (11.4)" "0.0 - 49.4 (7.2)" 
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
"QRICH1 WILD-TYPE" "QRICH1 WILD-TYPE" "QRICH1 WILD-TYPE" "QRICH1 WILD-TYPE" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"QRICH1 WILD-TYPE" "QRICH1 WILD-TYPE"   "QRICH1 MUTATED"   "QRICH1 MUTATED" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
"QRICH1 WILD-TYPE" "QRICH1 WILD-TYPE" "QRICH1 WILD-TYPE" "QRICH1 WILD-TYPE" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"QRICH1 WILD-TYPE" "QRICH1 WILD-TYPE" "QRICH1 WILD-TYPE" "QRICH1 WILD-TYPE" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
  "QRICH1 MUTATED" "QRICH1 WILD-TYPE" "QRICH1 WILD-TYPE" "QRICH1 WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
"QRICH1 WILD-TYPE"   "QRICH1 MUTATED" "QRICH1 WILD-TYPE"   "QRICH1 MUTATED" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"QRICH1 WILD-TYPE"   "QRICH1 MUTATED" "QRICH1 WILD-TYPE" "QRICH1 WILD-TYPE" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
"QRICH1 WILD-TYPE" "QRICH1 WILD-TYPE" "QRICH1 WILD-TYPE"   "QRICH1 MUTATED" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
"QRICH1 WILD-TYPE" "QRICH1 WILD-TYPE" "QRICH1 WILD-TYPE" "QRICH1 WILD-TYPE" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
  "QRICH1 MUTATED"   "QRICH1 MUTATED"   "QRICH1 MUTATED" "QRICH1 WILD-TYPE" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
"QRICH1 WILD-TYPE" "QRICH1 WILD-TYPE"   "QRICH1 MUTATED"   "QRICH1 MUTATED" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
"QRICH1 WILD-TYPE" "QRICH1 WILD-TYPE" "QRICH1 WILD-TYPE" "QRICH1 WILD-TYPE" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
  "QRICH1 MUTATED"   "QRICH1 MUTATED" "QRICH1 WILD-TYPE"   "QRICH1 MUTATED" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
"QRICH1 WILD-TYPE" "QRICH1 WILD-TYPE" "QRICH1 WILD-TYPE" "QRICH1 WILD-TYPE" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"QRICH1 WILD-TYPE" "QRICH1 WILD-TYPE" "QRICH1 WILD-TYPE" "QRICH1 WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"QRICH1 WILD-TYPE" "QRICH1 WILD-TYPE" "QRICH1 WILD-TYPE" "QRICH1 WILD-TYPE" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
"QRICH1 WILD-TYPE" "QRICH1 WILD-TYPE" "QRICH1 WILD-TYPE" "QRICH1 WILD-TYPE" 
      TCGA-US-A77J 
"QRICH1 WILD-TYPE" 
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
"QRICH1 WILD-TYPE" "QRICH1 WILD-TYPE" "QRICH1 WILD-TYPE" "QRICH1 WILD-TYPE" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"QRICH1 WILD-TYPE" "QRICH1 WILD-TYPE"   "QRICH1 MUTATED"   "QRICH1 MUTATED" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
"QRICH1 WILD-TYPE" "QRICH1 WILD-TYPE" "QRICH1 WILD-TYPE" "QRICH1 WILD-TYPE" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"QRICH1 WILD-TYPE" "QRICH1 WILD-TYPE" "QRICH1 WILD-TYPE" "QRICH1 WILD-TYPE" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
  "QRICH1 MUTATED" "QRICH1 WILD-TYPE" "QRICH1 WILD-TYPE" "QRICH1 WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
"QRICH1 WILD-TYPE"   "QRICH1 MUTATED" "QRICH1 WILD-TYPE"   "QRICH1 MUTATED" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"QRICH1 WILD-TYPE"   "QRICH1 MUTATED" "QRICH1 WILD-TYPE" "QRICH1 WILD-TYPE" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
"QRICH1 WILD-TYPE" "QRICH1 WILD-TYPE" "QRICH1 WILD-TYPE"   "QRICH1 MUTATED" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
"QRICH1 WILD-TYPE" "QRICH1 WILD-TYPE" "QRICH1 WILD-TYPE" "QRICH1 WILD-TYPE" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
  "QRICH1 MUTATED"   "QRICH1 MUTATED"   "QRICH1 MUTATED" "QRICH1 WILD-TYPE" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
"QRICH1 WILD-TYPE" "QRICH1 WILD-TYPE"   "QRICH1 MUTATED"   "QRICH1 MUTATED" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
"QRICH1 WILD-TYPE" "QRICH1 WILD-TYPE" "QRICH1 WILD-TYPE" "QRICH1 WILD-TYPE" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
  "QRICH1 MUTATED"   "QRICH1 MUTATED" "QRICH1 WILD-TYPE"   "QRICH1 MUTATED" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
"QRICH1 WILD-TYPE" "QRICH1 WILD-TYPE" "QRICH1 WILD-TYPE" "QRICH1 WILD-TYPE" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"QRICH1 WILD-TYPE" "QRICH1 WILD-TYPE" "QRICH1 WILD-TYPE" "QRICH1 WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"QRICH1 WILD-TYPE" "QRICH1 WILD-TYPE" "QRICH1 WILD-TYPE" "QRICH1 WILD-TYPE" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
"QRICH1 WILD-TYPE" "QRICH1 WILD-TYPE" "QRICH1 WILD-TYPE" "QRICH1 WILD-TYPE" 
      TCGA-US-A77J 
"QRICH1 WILD-TYPE" 
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
"QRICH1 WILD-TYPE" "QRICH1 WILD-TYPE" "QRICH1 WILD-TYPE" "QRICH1 WILD-TYPE" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"QRICH1 WILD-TYPE" "QRICH1 WILD-TYPE"   "QRICH1 MUTATED"   "QRICH1 MUTATED" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
"QRICH1 WILD-TYPE" "QRICH1 WILD-TYPE" "QRICH1 WILD-TYPE" "QRICH1 WILD-TYPE" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"QRICH1 WILD-TYPE" "QRICH1 WILD-TYPE" "QRICH1 WILD-TYPE" "QRICH1 WILD-TYPE" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
  "QRICH1 MUTATED" "QRICH1 WILD-TYPE" "QRICH1 WILD-TYPE" "QRICH1 WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
"QRICH1 WILD-TYPE"   "QRICH1 MUTATED" "QRICH1 WILD-TYPE"   "QRICH1 MUTATED" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"QRICH1 WILD-TYPE"   "QRICH1 MUTATED" "QRICH1 WILD-TYPE" "QRICH1 WILD-TYPE" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
"QRICH1 WILD-TYPE" "QRICH1 WILD-TYPE" "QRICH1 WILD-TYPE"   "QRICH1 MUTATED" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
"QRICH1 WILD-TYPE" "QRICH1 WILD-TYPE" "QRICH1 WILD-TYPE" "QRICH1 WILD-TYPE" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
  "QRICH1 MUTATED"   "QRICH1 MUTATED"   "QRICH1 MUTATED" "QRICH1 WILD-TYPE" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
"QRICH1 WILD-TYPE" "QRICH1 WILD-TYPE"   "QRICH1 MUTATED"   "QRICH1 MUTATED" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
"QRICH1 WILD-TYPE" "QRICH1 WILD-TYPE" "QRICH1 WILD-TYPE" "QRICH1 WILD-TYPE" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
  "QRICH1 MUTATED"   "QRICH1 MUTATED" "QRICH1 WILD-TYPE"   "QRICH1 MUTATED" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
"QRICH1 WILD-TYPE" "QRICH1 WILD-TYPE" "QRICH1 WILD-TYPE" "QRICH1 WILD-TYPE" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"QRICH1 WILD-TYPE" "QRICH1 WILD-TYPE" "QRICH1 WILD-TYPE" "QRICH1 WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"QRICH1 WILD-TYPE" "QRICH1 WILD-TYPE" "QRICH1 WILD-TYPE" "QRICH1 WILD-TYPE" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
"QRICH1 WILD-TYPE" "QRICH1 WILD-TYPE" "QRICH1 WILD-TYPE" "QRICH1 WILD-TYPE" 
      TCGA-US-A77J 
"QRICH1 WILD-TYPE" 
[1] "hr=" "1"  
D135V2, continuous
                  vv
clus               STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  QRICH1 MUTATED          0        0         2        12         0        1
  QRICH1 WILD-TYPE        1        4         9        39         2        2
D135V3, multiclass
                  vv
clus               T1+T2 T3+T4
  QRICH1 MUTATED       0    15
  QRICH1 WILD-TYPE     6    51
D135V4, multiclass
       clus
vv      QRICH1 MUTATED QRICH1 WILD-TYPE
  T1+T2              0                6
  T3+T4             15               51
D135V5, binary
                  cls
clus                0  1
  QRICH1 MUTATED    2 13
  QRICH1 WILD-TYPE 15 41
[1] "tbl2"
                  cls
clus               [,1] [,2]
  QRICH1 MUTATED      2   13
  QRICH1 WILD-TYPE   15   41
   clus
vv  QRICH1 MUTATED QRICH1 WILD-TYPE
  0              2               15
  1             13               41
                  vv
clus               M0 M1 MX
  QRICH1 MUTATED    5  1  9
  QRICH1 WILD-TYPE 34  2 21
D135V6, multiclass
    clus
vv   QRICH1 MUTATED QRICH1 WILD-TYPE
  M0              5               34
  M1              1                2
  MX              9               21
D135V7, binary
                  cls
clus                0  1
  QRICH1 MUTATED   10  5
  QRICH1 WILD-TYPE 26 31
[1] "tbl2"
                  cls
clus               [,1] [,2]
  QRICH1 MUTATED     10    5
  QRICH1 WILD-TYPE   26   31
        clus
vv       QRICH1 MUTATED QRICH1 WILD-TYPE
  FEMALE             10               26
  MALE                5               31
                  vv
clus               PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  QRICH1 MUTATED                                    13
  QRICH1 WILD-TYPE                                  52
                  vv
clus               PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  QRICH1 MUTATED                                       2
  QRICH1 WILD-TYPE                                     2
                  vv
clus               PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  QRICH1 MUTATED                                                  0
  QRICH1 WILD-TYPE                                                2
D135V8, multiclass
                                                  clus
vv                                                 QRICH1 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                          13
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                         2
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA              0
                                                  clus
vv                                                 QRICH1 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                            52
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                           2
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                2
D135V9, continuous
D135V10, continuous
                  vv
clus               R0 R1 RX
  QRICH1 MUTATED    7  5  1
  QRICH1 WILD-TYPE 35 19  1
D135V11, multiclass
    clus
vv   QRICH1 MUTATED QRICH1 WILD-TYPE
  R0              7               35
  R1              5               19
  RX              1                1
D135V12, continuous

Clustering(136) Variable = RAD17 MUTATION ANALYSIS
D136V1, survival
                 sevent
clus2              0  1
  RAD17 MUTATED    1  3
  RAD17 WILD-TYPE 39 26
  RAD17 MUTATED RAD17 WILD-TYPE 
              4              65 
  RAD17 MUTATED RAD17 WILD-TYPE 
              3              26 
$`RAD17 MUTATED`
TCGA-F2-A44G TCGA-HZ-8005 TCGA-IB-7645 TCGA-IB-7885 
        5.03         3.95        49.38        27.98 

$`RAD17 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44H TCGA-FB-A4P5 
       10.98         9.70        11.84         7.10        19.27         0.13 
TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR TCGA-FZ-5920 
       11.93        12.66         2.47         0.03         5.46         2.01 
TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7289 
       36.20        20.81        12.89         7.66        13.02         7.89 
TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 
        0.92         0.66         0.13         0.26        12.13        11.87 
TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8315 TCGA-HZ-8317 
        0.26         0.62         0.79         0.69         0.92         0.53 
TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK 
        0.16         2.99         0.76         0.95         6.38         1.51 
TCGA-IB-7644 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7651 TCGA-IB-7652 
       11.41         4.77        21.90        15.35        19.82        15.65 
TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 
        4.04         3.62        43.79        15.81        19.66        16.04 
TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP 
        3.85        15.98         0.56        17.16        10.82         9.86 
TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W 
        7.20        15.12         0.26         1.35         4.18         3.62 
TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
        8.12        13.68        16.80        14.14        18.67 

  RAD17 MUTATED RAD17 WILD-TYPE 
           3.95            0.03 
  RAD17 MUTATED RAD17 WILD-TYPE 
          49.38           43.79 
  RAD17 MUTATED RAD17 WILD-TYPE 
         16.505           7.660 
[1] "4.0 - 49.4 (16.5)" "0.0 - 43.8 (7.7)" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"RAD17 WILD-TYPE" "RAD17 WILD-TYPE" "RAD17 WILD-TYPE" "RAD17 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
  "RAD17 MUTATED" "RAD17 WILD-TYPE" "RAD17 WILD-TYPE" "RAD17 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"RAD17 WILD-TYPE" "RAD17 WILD-TYPE" "RAD17 WILD-TYPE" "RAD17 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"RAD17 WILD-TYPE" "RAD17 WILD-TYPE" "RAD17 WILD-TYPE" "RAD17 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"RAD17 WILD-TYPE" "RAD17 WILD-TYPE" "RAD17 WILD-TYPE" "RAD17 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"RAD17 WILD-TYPE" "RAD17 WILD-TYPE" "RAD17 WILD-TYPE" "RAD17 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"RAD17 WILD-TYPE" "RAD17 WILD-TYPE" "RAD17 WILD-TYPE" "RAD17 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"RAD17 WILD-TYPE"   "RAD17 MUTATED" "RAD17 WILD-TYPE" "RAD17 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"RAD17 WILD-TYPE" "RAD17 WILD-TYPE" "RAD17 WILD-TYPE" "RAD17 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"RAD17 WILD-TYPE" "RAD17 WILD-TYPE" "RAD17 WILD-TYPE"   "RAD17 MUTATED" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"RAD17 WILD-TYPE" "RAD17 WILD-TYPE" "RAD17 WILD-TYPE" "RAD17 WILD-TYPE" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"RAD17 WILD-TYPE"   "RAD17 MUTATED" "RAD17 WILD-TYPE" "RAD17 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"RAD17 WILD-TYPE" "RAD17 WILD-TYPE" "RAD17 WILD-TYPE" "RAD17 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"RAD17 WILD-TYPE" "RAD17 WILD-TYPE" "RAD17 WILD-TYPE" "RAD17 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"RAD17 WILD-TYPE" "RAD17 WILD-TYPE" "RAD17 WILD-TYPE" "RAD17 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"RAD17 WILD-TYPE" "RAD17 WILD-TYPE" "RAD17 WILD-TYPE" "RAD17 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"RAD17 WILD-TYPE" "RAD17 WILD-TYPE" "RAD17 WILD-TYPE" "RAD17 WILD-TYPE" 
     TCGA-US-A77J 
"RAD17 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"RAD17 WILD-TYPE" "RAD17 WILD-TYPE" "RAD17 WILD-TYPE" "RAD17 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
  "RAD17 MUTATED" "RAD17 WILD-TYPE" "RAD17 WILD-TYPE" "RAD17 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"RAD17 WILD-TYPE" "RAD17 WILD-TYPE" "RAD17 WILD-TYPE" "RAD17 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"RAD17 WILD-TYPE" "RAD17 WILD-TYPE" "RAD17 WILD-TYPE" "RAD17 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"RAD17 WILD-TYPE" "RAD17 WILD-TYPE" "RAD17 WILD-TYPE" "RAD17 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"RAD17 WILD-TYPE" "RAD17 WILD-TYPE" "RAD17 WILD-TYPE" "RAD17 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"RAD17 WILD-TYPE" "RAD17 WILD-TYPE" "RAD17 WILD-TYPE" "RAD17 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"RAD17 WILD-TYPE"   "RAD17 MUTATED" "RAD17 WILD-TYPE" "RAD17 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"RAD17 WILD-TYPE" "RAD17 WILD-TYPE" "RAD17 WILD-TYPE" "RAD17 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"RAD17 WILD-TYPE" "RAD17 WILD-TYPE" "RAD17 WILD-TYPE"   "RAD17 MUTATED" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"RAD17 WILD-TYPE" "RAD17 WILD-TYPE" "RAD17 WILD-TYPE" "RAD17 WILD-TYPE" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"RAD17 WILD-TYPE"   "RAD17 MUTATED" "RAD17 WILD-TYPE" "RAD17 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"RAD17 WILD-TYPE" "RAD17 WILD-TYPE" "RAD17 WILD-TYPE" "RAD17 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"RAD17 WILD-TYPE" "RAD17 WILD-TYPE" "RAD17 WILD-TYPE" "RAD17 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"RAD17 WILD-TYPE" "RAD17 WILD-TYPE" "RAD17 WILD-TYPE" "RAD17 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"RAD17 WILD-TYPE" "RAD17 WILD-TYPE" "RAD17 WILD-TYPE" "RAD17 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"RAD17 WILD-TYPE" "RAD17 WILD-TYPE" "RAD17 WILD-TYPE" "RAD17 WILD-TYPE" 
     TCGA-US-A77J 
"RAD17 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"RAD17 WILD-TYPE" "RAD17 WILD-TYPE" "RAD17 WILD-TYPE" "RAD17 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
  "RAD17 MUTATED" "RAD17 WILD-TYPE" "RAD17 WILD-TYPE" "RAD17 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"RAD17 WILD-TYPE" "RAD17 WILD-TYPE" "RAD17 WILD-TYPE" "RAD17 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"RAD17 WILD-TYPE" "RAD17 WILD-TYPE" "RAD17 WILD-TYPE" "RAD17 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"RAD17 WILD-TYPE" "RAD17 WILD-TYPE" "RAD17 WILD-TYPE" "RAD17 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"RAD17 WILD-TYPE" "RAD17 WILD-TYPE" "RAD17 WILD-TYPE" "RAD17 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"RAD17 WILD-TYPE" "RAD17 WILD-TYPE" "RAD17 WILD-TYPE" "RAD17 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"RAD17 WILD-TYPE"   "RAD17 MUTATED" "RAD17 WILD-TYPE" "RAD17 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"RAD17 WILD-TYPE" "RAD17 WILD-TYPE" "RAD17 WILD-TYPE" "RAD17 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"RAD17 WILD-TYPE" "RAD17 WILD-TYPE" "RAD17 WILD-TYPE"   "RAD17 MUTATED" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"RAD17 WILD-TYPE" "RAD17 WILD-TYPE" "RAD17 WILD-TYPE" "RAD17 WILD-TYPE" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"RAD17 WILD-TYPE"   "RAD17 MUTATED" "RAD17 WILD-TYPE" "RAD17 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"RAD17 WILD-TYPE" "RAD17 WILD-TYPE" "RAD17 WILD-TYPE" "RAD17 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"RAD17 WILD-TYPE" "RAD17 WILD-TYPE" "RAD17 WILD-TYPE" "RAD17 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"RAD17 WILD-TYPE" "RAD17 WILD-TYPE" "RAD17 WILD-TYPE" "RAD17 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"RAD17 WILD-TYPE" "RAD17 WILD-TYPE" "RAD17 WILD-TYPE" "RAD17 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"RAD17 WILD-TYPE" "RAD17 WILD-TYPE" "RAD17 WILD-TYPE" "RAD17 WILD-TYPE" 
     TCGA-US-A77J 
"RAD17 WILD-TYPE" 
[1] "hr=" "2.5"
D136V2, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  RAD17 MUTATED          0        0         0         4         0        0
  RAD17 WILD-TYPE        1        4        11        47         2        3
D136V3, multiclass
                 vv
clus              T1+T2 T3+T4
  RAD17 MUTATED       0     4
  RAD17 WILD-TYPE     6    62
D136V4, multiclass
       clus
vv      RAD17 MUTATED RAD17 WILD-TYPE
  T1+T2             0               6
  T3+T4             4              62
D136V5, binary
                 cls
clus               0  1
  RAD17 MUTATED    0  4
  RAD17 WILD-TYPE 17 50
[1] "tbl2"
                 cls
clus              [,1] [,2]
  RAD17 MUTATED      0    4
  RAD17 WILD-TYPE   17   50
   clus
vv  RAD17 MUTATED RAD17 WILD-TYPE
  0             0              17
  1             4              50
                 vv
clus              M0 M1 MX
  RAD17 MUTATED    3  0  1
  RAD17 WILD-TYPE 36  3 29
D136V6, multiclass
    clus
vv   RAD17 MUTATED RAD17 WILD-TYPE
  M0             3              36
  M1             0               3
  MX             1              29
D136V7, binary
                 cls
clus               0  1
  RAD17 MUTATED    3  1
  RAD17 WILD-TYPE 33 35
[1] "tbl2"
                 cls
clus              [,1] [,2]
  RAD17 MUTATED      3    1
  RAD17 WILD-TYPE   33   35
        clus
vv       RAD17 MUTATED RAD17 WILD-TYPE
  FEMALE             3              33
  MALE               1              35
                 vv
clus              PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  RAD17 MUTATED                                     4
  RAD17 WILD-TYPE                                  61
                 vv
clus              PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  RAD17 MUTATED                                       0
  RAD17 WILD-TYPE                                     4
                 vv
clus              PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  RAD17 MUTATED                                                  0
  RAD17 WILD-TYPE                                                2
D136V8, multiclass
                                                  clus
vv                                                 RAD17 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                          4
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                        0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA             0
                                                  clus
vv                                                 RAD17 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                           61
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                          4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA               2
D136V9, continuous
[1] "Remove cluster labels:" "RAD17 MUTATED"         
clus
  RAD17 MUTATED RAD17 WILD-TYPE 
              1              21 
     TCGA-F2-6880      TCGA-FB-A4P5      TCGA-FB-A4P6      TCGA-FB-A5VM 
"RAD17 WILD-TYPE" "RAD17 WILD-TYPE" "RAD17 WILD-TYPE" "RAD17 WILD-TYPE" 
     TCGA-FB-A78T      TCGA-FB-A7DR      TCGA-H6-8124      TCGA-H6-A45N 
"RAD17 WILD-TYPE" "RAD17 WILD-TYPE" "RAD17 WILD-TYPE" "RAD17 WILD-TYPE" 
     TCGA-H8-A6C1      TCGA-IB-7644      TCGA-IB-7649      TCGA-IB-7651 
"RAD17 WILD-TYPE" "RAD17 WILD-TYPE" "RAD17 WILD-TYPE" "RAD17 WILD-TYPE" 
     TCGA-IB-7886      TCGA-IB-7887      TCGA-IB-7891      TCGA-IB-8126 
"RAD17 WILD-TYPE" "RAD17 WILD-TYPE" "RAD17 WILD-TYPE" "RAD17 WILD-TYPE" 
     TCGA-IB-8127      TCGA-IB-A5SS      TCGA-IB-A6UG      TCGA-LB-A7SX 
"RAD17 WILD-TYPE" "RAD17 WILD-TYPE" "RAD17 WILD-TYPE" "RAD17 WILD-TYPE" 
     TCGA-OE-A75W 
"RAD17 WILD-TYPE" 
D136V10, continuous
[1] "Remove cluster labels:" "RAD17 MUTATED"         
clus
  RAD17 MUTATED RAD17 WILD-TYPE 
              1              18 
     TCGA-FB-A4P5      TCGA-FB-A4P6      TCGA-FB-A5VM      TCGA-FB-A78T 
"RAD17 WILD-TYPE" "RAD17 WILD-TYPE" "RAD17 WILD-TYPE" "RAD17 WILD-TYPE" 
     TCGA-FB-A7DR      TCGA-H6-8124      TCGA-H8-A6C1      TCGA-IB-7644 
"RAD17 WILD-TYPE" "RAD17 WILD-TYPE" "RAD17 WILD-TYPE" "RAD17 WILD-TYPE" 
     TCGA-IB-7649      TCGA-IB-7651      TCGA-IB-7886      TCGA-IB-7891 
"RAD17 WILD-TYPE" "RAD17 WILD-TYPE" "RAD17 WILD-TYPE" "RAD17 WILD-TYPE" 
     TCGA-IB-8126      TCGA-IB-8127      TCGA-IB-A5SS      TCGA-IB-A6UG 
"RAD17 WILD-TYPE" "RAD17 WILD-TYPE" "RAD17 WILD-TYPE" "RAD17 WILD-TYPE" 
     TCGA-LB-A7SX      TCGA-OE-A75W 
"RAD17 WILD-TYPE" "RAD17 WILD-TYPE" 
                 vv
clus              R0 R1 RX
  RAD17 MUTATED    2  2  0
  RAD17 WILD-TYPE 40 22  2
D136V11, multiclass
    clus
vv   RAD17 MUTATED RAD17 WILD-TYPE
  R0             2              40
  R1             2              22
  RX             0               2
D136V12, continuous

Clustering(137) Variable = COTL1 MUTATION ANALYSIS
D137V1, survival
                 sevent
clus2              0  1
  COTL1 MUTATED    2  2
  COTL1 WILD-TYPE 38 27
  COTL1 MUTATED COTL1 WILD-TYPE 
              4              65 
  COTL1 MUTATED COTL1 WILD-TYPE 
              2              27 
$`COTL1 MUTATED`
TCGA-FB-A4P6 TCGA-FB-A7DR TCGA-IB-7651 TCGA-IB-A6UG 
       11.93         5.46        19.82         1.35 

$`COTL1 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P5 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FZ-5920 TCGA-FZ-5922 
        0.13        12.66         2.47         0.03         2.01        36.20 
TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7289 TCGA-HZ-7918 
       20.81        12.89         7.66        13.02         7.89         0.92 
TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 
        0.66         0.13         0.26        12.13        11.87         0.26 
TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 
        0.62         0.79         0.69         3.95         0.92         0.53 
TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK 
        0.16         2.99         0.76         0.95         6.38         1.51 
TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7652 
       11.41        49.38         4.77        21.90        15.35        15.65 
TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 
       27.98         4.04         3.62        43.79        15.81        19.66 
TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO 
       16.04         3.85        15.98         0.56        17.16        10.82 
TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST TCGA-LB-A7SX TCGA-OE-A75W 
        9.86         7.20        15.12         0.26         4.18         3.62 
TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
        8.12        13.68        16.80        14.14        18.67 

  COTL1 MUTATED COTL1 WILD-TYPE 
           1.35            0.03 
  COTL1 MUTATED COTL1 WILD-TYPE 
          19.82           49.38 
  COTL1 MUTATED COTL1 WILD-TYPE 
          8.695           7.660 
[1] "1.4 - 19.8 (8.7)" "0.0 - 49.4 (7.7)"
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"COTL1 WILD-TYPE" "COTL1 WILD-TYPE" "COTL1 WILD-TYPE" "COTL1 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"COTL1 WILD-TYPE" "COTL1 WILD-TYPE" "COTL1 WILD-TYPE"   "COTL1 MUTATED" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"COTL1 WILD-TYPE" "COTL1 WILD-TYPE" "COTL1 WILD-TYPE"   "COTL1 MUTATED" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"COTL1 WILD-TYPE" "COTL1 WILD-TYPE" "COTL1 WILD-TYPE" "COTL1 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"COTL1 WILD-TYPE" "COTL1 WILD-TYPE" "COTL1 WILD-TYPE" "COTL1 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"COTL1 WILD-TYPE" "COTL1 WILD-TYPE" "COTL1 WILD-TYPE" "COTL1 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"COTL1 WILD-TYPE" "COTL1 WILD-TYPE" "COTL1 WILD-TYPE" "COTL1 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"COTL1 WILD-TYPE" "COTL1 WILD-TYPE" "COTL1 WILD-TYPE" "COTL1 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"COTL1 WILD-TYPE" "COTL1 WILD-TYPE" "COTL1 WILD-TYPE" "COTL1 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"COTL1 WILD-TYPE" "COTL1 WILD-TYPE" "COTL1 WILD-TYPE" "COTL1 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"COTL1 WILD-TYPE" "COTL1 WILD-TYPE" "COTL1 WILD-TYPE"   "COTL1 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"COTL1 WILD-TYPE" "COTL1 WILD-TYPE" "COTL1 WILD-TYPE" "COTL1 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"COTL1 WILD-TYPE" "COTL1 WILD-TYPE" "COTL1 WILD-TYPE" "COTL1 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"COTL1 WILD-TYPE" "COTL1 WILD-TYPE" "COTL1 WILD-TYPE" "COTL1 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"COTL1 WILD-TYPE" "COTL1 WILD-TYPE" "COTL1 WILD-TYPE" "COTL1 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"COTL1 WILD-TYPE"   "COTL1 MUTATED" "COTL1 WILD-TYPE" "COTL1 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"COTL1 WILD-TYPE" "COTL1 WILD-TYPE" "COTL1 WILD-TYPE" "COTL1 WILD-TYPE" 
     TCGA-US-A77J 
"COTL1 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"COTL1 WILD-TYPE" "COTL1 WILD-TYPE" "COTL1 WILD-TYPE" "COTL1 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"COTL1 WILD-TYPE" "COTL1 WILD-TYPE" "COTL1 WILD-TYPE"   "COTL1 MUTATED" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"COTL1 WILD-TYPE" "COTL1 WILD-TYPE" "COTL1 WILD-TYPE"   "COTL1 MUTATED" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"COTL1 WILD-TYPE" "COTL1 WILD-TYPE" "COTL1 WILD-TYPE" "COTL1 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"COTL1 WILD-TYPE" "COTL1 WILD-TYPE" "COTL1 WILD-TYPE" "COTL1 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"COTL1 WILD-TYPE" "COTL1 WILD-TYPE" "COTL1 WILD-TYPE" "COTL1 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"COTL1 WILD-TYPE" "COTL1 WILD-TYPE" "COTL1 WILD-TYPE" "COTL1 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"COTL1 WILD-TYPE" "COTL1 WILD-TYPE" "COTL1 WILD-TYPE" "COTL1 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"COTL1 WILD-TYPE" "COTL1 WILD-TYPE" "COTL1 WILD-TYPE" "COTL1 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"COTL1 WILD-TYPE" "COTL1 WILD-TYPE" "COTL1 WILD-TYPE" "COTL1 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"COTL1 WILD-TYPE" "COTL1 WILD-TYPE" "COTL1 WILD-TYPE"   "COTL1 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"COTL1 WILD-TYPE" "COTL1 WILD-TYPE" "COTL1 WILD-TYPE" "COTL1 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"COTL1 WILD-TYPE" "COTL1 WILD-TYPE" "COTL1 WILD-TYPE" "COTL1 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"COTL1 WILD-TYPE" "COTL1 WILD-TYPE" "COTL1 WILD-TYPE" "COTL1 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"COTL1 WILD-TYPE" "COTL1 WILD-TYPE" "COTL1 WILD-TYPE" "COTL1 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"COTL1 WILD-TYPE"   "COTL1 MUTATED" "COTL1 WILD-TYPE" "COTL1 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"COTL1 WILD-TYPE" "COTL1 WILD-TYPE" "COTL1 WILD-TYPE" "COTL1 WILD-TYPE" 
     TCGA-US-A77J 
"COTL1 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"COTL1 WILD-TYPE" "COTL1 WILD-TYPE" "COTL1 WILD-TYPE" "COTL1 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"COTL1 WILD-TYPE" "COTL1 WILD-TYPE" "COTL1 WILD-TYPE"   "COTL1 MUTATED" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"COTL1 WILD-TYPE" "COTL1 WILD-TYPE" "COTL1 WILD-TYPE"   "COTL1 MUTATED" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"COTL1 WILD-TYPE" "COTL1 WILD-TYPE" "COTL1 WILD-TYPE" "COTL1 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"COTL1 WILD-TYPE" "COTL1 WILD-TYPE" "COTL1 WILD-TYPE" "COTL1 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"COTL1 WILD-TYPE" "COTL1 WILD-TYPE" "COTL1 WILD-TYPE" "COTL1 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"COTL1 WILD-TYPE" "COTL1 WILD-TYPE" "COTL1 WILD-TYPE" "COTL1 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"COTL1 WILD-TYPE" "COTL1 WILD-TYPE" "COTL1 WILD-TYPE" "COTL1 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"COTL1 WILD-TYPE" "COTL1 WILD-TYPE" "COTL1 WILD-TYPE" "COTL1 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"COTL1 WILD-TYPE" "COTL1 WILD-TYPE" "COTL1 WILD-TYPE" "COTL1 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"COTL1 WILD-TYPE" "COTL1 WILD-TYPE" "COTL1 WILD-TYPE"   "COTL1 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"COTL1 WILD-TYPE" "COTL1 WILD-TYPE" "COTL1 WILD-TYPE" "COTL1 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"COTL1 WILD-TYPE" "COTL1 WILD-TYPE" "COTL1 WILD-TYPE" "COTL1 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"COTL1 WILD-TYPE" "COTL1 WILD-TYPE" "COTL1 WILD-TYPE" "COTL1 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"COTL1 WILD-TYPE" "COTL1 WILD-TYPE" "COTL1 WILD-TYPE" "COTL1 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"COTL1 WILD-TYPE"   "COTL1 MUTATED" "COTL1 WILD-TYPE" "COTL1 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"COTL1 WILD-TYPE" "COTL1 WILD-TYPE" "COTL1 WILD-TYPE" "COTL1 WILD-TYPE" 
     TCGA-US-A77J 
"COTL1 WILD-TYPE" 
[1] "hr=" "1.2"
D137V2, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  COTL1 MUTATED          0        0         1         3         0        0
  COTL1 WILD-TYPE        1        4        10        48         2        3
D137V3, multiclass
                 vv
clus              T1+T2 T3+T4
  COTL1 MUTATED       0     4
  COTL1 WILD-TYPE     6    62
D137V4, multiclass
       clus
vv      COTL1 MUTATED COTL1 WILD-TYPE
  T1+T2             0               6
  T3+T4             4              62
D137V5, binary
                 cls
clus               0  1
  COTL1 MUTATED    0  3
  COTL1 WILD-TYPE 17 51
[1] "tbl2"
                 cls
clus              [,1] [,2]
  COTL1 MUTATED      0    3
  COTL1 WILD-TYPE   17   51
   clus
vv  COTL1 MUTATED COTL1 WILD-TYPE
  0             0              17
  1             3              51
                 vv
clus              M0 M1 MX
  COTL1 MUTATED    3  0  1
  COTL1 WILD-TYPE 36  3 29
D137V6, multiclass
    clus
vv   COTL1 MUTATED COTL1 WILD-TYPE
  M0             3              36
  M1             0               3
  MX             1              29
D137V7, binary
                 cls
clus               0  1
  COTL1 MUTATED    1  3
  COTL1 WILD-TYPE 35 33
[1] "tbl2"
                 cls
clus              [,1] [,2]
  COTL1 MUTATED      1    3
  COTL1 WILD-TYPE   35   33
        clus
vv       COTL1 MUTATED COTL1 WILD-TYPE
  FEMALE             1              35
  MALE               3              33
                 vv
clus              PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  COTL1 MUTATED                                     3
  COTL1 WILD-TYPE                                  62
                 vv
clus              PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  COTL1 MUTATED                                       0
  COTL1 WILD-TYPE                                     4
                 vv
clus              PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  COTL1 MUTATED                                                  1
  COTL1 WILD-TYPE                                                1
D137V8, multiclass
                                                  clus
vv                                                 COTL1 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                          3
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                        0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA             1
                                                  clus
vv                                                 COTL1 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                           62
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                          4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA               1
D137V9, continuous
D137V10, continuous
                 vv
clus              R0 R1 RX
  COTL1 MUTATED    2  1  0
  COTL1 WILD-TYPE 40 23  2
D137V11, multiclass
    clus
vv   COTL1 MUTATED COTL1 WILD-TYPE
  R0             2              40
  R1             1              23
  RX             0               2
D137V12, continuous

Clustering(138) Variable = CDH3 MUTATION ANALYSIS
D138V1, survival
                sevent
clus2             0  1
  CDH3 MUTATED    3  5
  CDH3 WILD-TYPE 37 24
  CDH3 MUTATED CDH3 WILD-TYPE 
             8             61 
  CDH3 MUTATED CDH3 WILD-TYPE 
             5             24 
$`CDH3 MUTATED`
TCGA-FZ-5920 TCGA-HZ-8002 TCGA-HZ-8005 TCGA-HZ-8317 TCGA-HZ-8636 TCGA-IB-7646 
        2.01         0.79         3.95         0.53         0.16         4.77 
TCGA-IB-7651 TCGA-IB-7889 
       19.82        15.81 

$`CDH3 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P5 TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR 
        0.13        11.93        12.66         2.47         0.03         5.46 
TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7289 
       36.20        20.81        12.89         7.66        13.02         7.89 
TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 
        0.92         0.66         0.13         0.26        12.13        11.87 
TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8003 TCGA-HZ-8315 TCGA-HZ-8638 TCGA-HZ-A49G 
        0.26         0.62         0.69         0.92         2.99         0.76 
TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7647 
        0.95         6.38         1.51        11.41        49.38        21.90 
TCGA-IB-7649 TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7888 
       15.35        15.65        27.98         4.04         3.62        43.79 
TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-8127 
       19.66        16.04         3.85        15.98         0.56        17.16 
TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG 
       10.82         9.86         7.20        15.12         0.26         1.35 
TCGA-LB-A7SX TCGA-OE-A75W TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E 
        4.18         3.62         8.12        13.68        16.80        14.14 
TCGA-US-A77J 
       18.67 

  CDH3 MUTATED CDH3 WILD-TYPE 
          0.16           0.03 
  CDH3 MUTATED CDH3 WILD-TYPE 
         19.82          49.38 
  CDH3 MUTATED CDH3 WILD-TYPE 
          2.98           8.12 
[1] "0.2 - 19.8 (3.0)" "0.0 - 49.4 (8.1)"
    TCGA-F2-6879     TCGA-F2-6880     TCGA-F2-7273     TCGA-F2-7276 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-F2-A44G     TCGA-F2-A44H     TCGA-FB-A4P5     TCGA-FB-A4P6 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-FB-A545     TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-FB-A7DR 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-FZ-5920     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-H6-8124 
  "CDH3 MUTATED" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-H6-A45N     TCGA-H8-A6C1     TCGA-HZ-7289     TCGA-HZ-7918 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-HZ-7919     TCGA-HZ-7922     TCGA-HZ-7923     TCGA-HZ-7924 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-HZ-7925     TCGA-HZ-7926     TCGA-HZ-8001     TCGA-HZ-8002 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE"   "CDH3 MUTATED" 
    TCGA-HZ-8003     TCGA-HZ-8005     TCGA-HZ-8315     TCGA-HZ-8317 
"CDH3 WILD-TYPE"   "CDH3 MUTATED" "CDH3 WILD-TYPE"   "CDH3 MUTATED" 
    TCGA-HZ-8636     TCGA-HZ-8638     TCGA-HZ-A49G     TCGA-HZ-A49H 
  "CDH3 MUTATED" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-IB-7644     TCGA-IB-7645 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7651 
  "CDH3 MUTATED" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE"   "CDH3 MUTATED" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-IB-7888     TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891 
"CDH3 WILD-TYPE"   "CDH3 MUTATED" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-IB-7893     TCGA-IB-7897     TCGA-IB-8126     TCGA-IB-8127 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-IB-A5ST     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-PZ-A5RE     TCGA-Q3-A5QY     TCGA-US-A779     TCGA-US-A77E 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-US-A77J 
"CDH3 WILD-TYPE" 
    TCGA-F2-6879     TCGA-F2-6880     TCGA-F2-7273     TCGA-F2-7276 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-F2-A44G     TCGA-F2-A44H     TCGA-FB-A4P5     TCGA-FB-A4P6 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-FB-A545     TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-FB-A7DR 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-FZ-5920     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-H6-8124 
  "CDH3 MUTATED" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-H6-A45N     TCGA-H8-A6C1     TCGA-HZ-7289     TCGA-HZ-7918 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-HZ-7919     TCGA-HZ-7922     TCGA-HZ-7923     TCGA-HZ-7924 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-HZ-7925     TCGA-HZ-7926     TCGA-HZ-8001     TCGA-HZ-8002 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE"   "CDH3 MUTATED" 
    TCGA-HZ-8003     TCGA-HZ-8005     TCGA-HZ-8315     TCGA-HZ-8317 
"CDH3 WILD-TYPE"   "CDH3 MUTATED" "CDH3 WILD-TYPE"   "CDH3 MUTATED" 
    TCGA-HZ-8636     TCGA-HZ-8638     TCGA-HZ-A49G     TCGA-HZ-A49H 
  "CDH3 MUTATED" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-IB-7644     TCGA-IB-7645 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7651 
  "CDH3 MUTATED" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE"   "CDH3 MUTATED" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-IB-7888     TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891 
"CDH3 WILD-TYPE"   "CDH3 MUTATED" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-IB-7893     TCGA-IB-7897     TCGA-IB-8126     TCGA-IB-8127 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-IB-A5ST     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-PZ-A5RE     TCGA-Q3-A5QY     TCGA-US-A779     TCGA-US-A77E 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-US-A77J 
"CDH3 WILD-TYPE" 
    TCGA-F2-6879     TCGA-F2-6880     TCGA-F2-7273     TCGA-F2-7276 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-F2-A44G     TCGA-F2-A44H     TCGA-FB-A4P5     TCGA-FB-A4P6 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-FB-A545     TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-FB-A7DR 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-FZ-5920     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-H6-8124 
  "CDH3 MUTATED" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-H6-A45N     TCGA-H8-A6C1     TCGA-HZ-7289     TCGA-HZ-7918 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-HZ-7919     TCGA-HZ-7922     TCGA-HZ-7923     TCGA-HZ-7924 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-HZ-7925     TCGA-HZ-7926     TCGA-HZ-8001     TCGA-HZ-8002 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE"   "CDH3 MUTATED" 
    TCGA-HZ-8003     TCGA-HZ-8005     TCGA-HZ-8315     TCGA-HZ-8317 
"CDH3 WILD-TYPE"   "CDH3 MUTATED" "CDH3 WILD-TYPE"   "CDH3 MUTATED" 
    TCGA-HZ-8636     TCGA-HZ-8638     TCGA-HZ-A49G     TCGA-HZ-A49H 
  "CDH3 MUTATED" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-IB-7644     TCGA-IB-7645 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7651 
  "CDH3 MUTATED" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE"   "CDH3 MUTATED" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-IB-7888     TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891 
"CDH3 WILD-TYPE"   "CDH3 MUTATED" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-IB-7893     TCGA-IB-7897     TCGA-IB-8126     TCGA-IB-8127 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-IB-A5ST     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-PZ-A5RE     TCGA-Q3-A5QY     TCGA-US-A779     TCGA-US-A77E 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-US-A77J 
"CDH3 WILD-TYPE" 
[1] "hr=" "2.7"
D138V2, continuous
                vv
clus             STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  CDH3 MUTATED          0        0         0         7         0        1
  CDH3 WILD-TYPE        1        4        11        44         2        2
D138V3, multiclass
                vv
clus             T1+T2 T3+T4
  CDH3 MUTATED       0     8
  CDH3 WILD-TYPE     6    58
D138V4, multiclass
       clus
vv      CDH3 MUTATED CDH3 WILD-TYPE
  T1+T2            0              6
  T3+T4            8             58
D138V5, binary
                cls
clus              0  1
  CDH3 MUTATED    1  7
  CDH3 WILD-TYPE 16 47
[1] "tbl2"
                cls
clus             [,1] [,2]
  CDH3 MUTATED      1    7
  CDH3 WILD-TYPE   16   47
   clus
vv  CDH3 MUTATED CDH3 WILD-TYPE
  0            1             16
  1            7             47
                vv
clus             M0 M1 MX
  CDH3 MUTATED    4  1  3
  CDH3 WILD-TYPE 35  2 27
D138V6, multiclass
    clus
vv   CDH3 MUTATED CDH3 WILD-TYPE
  M0            4             35
  M1            1              2
  MX            3             27
D138V7, binary
                cls
clus              0  1
  CDH3 MUTATED    4  4
  CDH3 WILD-TYPE 32 32
[1] "tbl2"
                cls
clus             [,1] [,2]
  CDH3 MUTATED      4    4
  CDH3 WILD-TYPE   32   32
        clus
vv       CDH3 MUTATED CDH3 WILD-TYPE
  FEMALE            4             32
  MALE              4             32
                vv
clus             PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  CDH3 MUTATED                                     8
  CDH3 WILD-TYPE                                  57
                vv
clus             PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  CDH3 MUTATED                                       0
  CDH3 WILD-TYPE                                     4
                vv
clus             PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  CDH3 MUTATED                                                  0
  CDH3 WILD-TYPE                                                2
D138V8, multiclass
                                                  clus
vv                                                 CDH3 MUTATED CDH3 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                         8             57
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                       0              4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA            0              2
D138V9, continuous
[1] "Remove cluster labels:" "CDH3 MUTATED"          
clus
  CDH3 MUTATED CDH3 WILD-TYPE 
             1             21 
    TCGA-F2-6880     TCGA-FB-A4P5     TCGA-FB-A4P6     TCGA-FB-A5VM 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-FB-A78T     TCGA-FB-A7DR     TCGA-H6-8124     TCGA-H6-A45N 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-H8-A6C1     TCGA-IB-7644     TCGA-IB-7649     TCGA-IB-7885 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-IB-7886     TCGA-IB-7887     TCGA-IB-7891     TCGA-IB-8126 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-IB-8127     TCGA-IB-A5SS     TCGA-IB-A6UG     TCGA-LB-A7SX 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-OE-A75W 
"CDH3 WILD-TYPE" 
D138V10, continuous
[1] "Remove cluster labels:" "CDH3 MUTATED"          
clus
  CDH3 MUTATED CDH3 WILD-TYPE 
             1             18 
    TCGA-FB-A4P5     TCGA-FB-A4P6     TCGA-FB-A5VM     TCGA-FB-A78T 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-FB-A7DR     TCGA-H6-8124     TCGA-H8-A6C1     TCGA-IB-7644 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-IB-7649     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7891 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-IB-8126     TCGA-IB-8127     TCGA-IB-A5SS     TCGA-IB-A6UG 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
    TCGA-LB-A7SX     TCGA-OE-A75W 
"CDH3 WILD-TYPE" "CDH3 WILD-TYPE" 
                vv
clus             R0 R1 RX
  CDH3 MUTATED    4  4  0
  CDH3 WILD-TYPE 38 20  2
D138V11, multiclass
    clus
vv   CDH3 MUTATED CDH3 WILD-TYPE
  R0            4             38
  R1            4             20
  RX            0              2
D138V12, continuous

Clustering(139) Variable = ECSIT MUTATION ANALYSIS
D139V1, survival
                 sevent
clus2              0  1
  ECSIT MUTATED    4  1
  ECSIT WILD-TYPE 36 28
  ECSIT MUTATED ECSIT WILD-TYPE 
              5              64 
  ECSIT MUTATED ECSIT WILD-TYPE 
              1              28 
$`ECSIT MUTATED`
TCGA-HZ-7919 TCGA-HZ-8001 TCGA-HZ-8003 TCGA-HZ-A4BH TCGA-IB-7893 
        0.66         0.62         0.69         6.38         3.85 

$`ECSIT WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P5 TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR 
        0.13        11.93        12.66         2.47         0.03         5.46 
TCGA-FZ-5920 TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 
        2.01        36.20        20.81        12.89         7.66        13.02 
TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 
        7.89         0.92         0.13         0.26        12.13        11.87 
TCGA-HZ-7926 TCGA-HZ-8002 TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8636 
        0.26         0.79         3.95         0.92         0.53         0.16 
TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7645 
        2.99         0.76         0.95         1.51        11.41        49.38 
TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7651 TCGA-IB-7652 TCGA-IB-7885 
        4.77        21.90        15.35        19.82        15.65        27.98 
TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 
        4.04         3.62        43.79        15.81        19.66        16.04 
TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ 
       15.98         0.56        17.16        10.82         9.86         7.20 
TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W TCGA-PZ-A5RE 
       15.12         0.26         1.35         4.18         3.62         8.12 
TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
       13.68        16.80        14.14        18.67 

  ECSIT MUTATED ECSIT WILD-TYPE 
           0.62            0.03 
  ECSIT MUTATED ECSIT WILD-TYPE 
           6.38           49.38 
  ECSIT MUTATED ECSIT WILD-TYPE 
           0.69            8.91 
[1] "0.6 - 6.4 (0.7)"  "0.0 - 49.4 (8.9)"
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"ECSIT WILD-TYPE" "ECSIT WILD-TYPE" "ECSIT WILD-TYPE" "ECSIT WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"ECSIT WILD-TYPE" "ECSIT WILD-TYPE" "ECSIT WILD-TYPE" "ECSIT WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"ECSIT WILD-TYPE" "ECSIT WILD-TYPE" "ECSIT WILD-TYPE" "ECSIT WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"ECSIT WILD-TYPE" "ECSIT WILD-TYPE" "ECSIT WILD-TYPE" "ECSIT WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"ECSIT WILD-TYPE" "ECSIT WILD-TYPE" "ECSIT WILD-TYPE" "ECSIT WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
  "ECSIT MUTATED" "ECSIT WILD-TYPE" "ECSIT WILD-TYPE" "ECSIT WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"ECSIT WILD-TYPE" "ECSIT WILD-TYPE"   "ECSIT MUTATED" "ECSIT WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
  "ECSIT MUTATED" "ECSIT WILD-TYPE" "ECSIT WILD-TYPE" "ECSIT WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"ECSIT WILD-TYPE" "ECSIT WILD-TYPE" "ECSIT WILD-TYPE" "ECSIT WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
  "ECSIT MUTATED" "ECSIT WILD-TYPE" "ECSIT WILD-TYPE" "ECSIT WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"ECSIT WILD-TYPE" "ECSIT WILD-TYPE" "ECSIT WILD-TYPE" "ECSIT WILD-TYPE" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"ECSIT WILD-TYPE" "ECSIT WILD-TYPE" "ECSIT WILD-TYPE" "ECSIT WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"ECSIT WILD-TYPE" "ECSIT WILD-TYPE" "ECSIT WILD-TYPE" "ECSIT WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
  "ECSIT MUTATED" "ECSIT WILD-TYPE" "ECSIT WILD-TYPE" "ECSIT WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"ECSIT WILD-TYPE" "ECSIT WILD-TYPE" "ECSIT WILD-TYPE" "ECSIT WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"ECSIT WILD-TYPE" "ECSIT WILD-TYPE" "ECSIT WILD-TYPE" "ECSIT WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"ECSIT WILD-TYPE" "ECSIT WILD-TYPE" "ECSIT WILD-TYPE" "ECSIT WILD-TYPE" 
     TCGA-US-A77J 
"ECSIT WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"ECSIT WILD-TYPE" "ECSIT WILD-TYPE" "ECSIT WILD-TYPE" "ECSIT WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"ECSIT WILD-TYPE" "ECSIT WILD-TYPE" "ECSIT WILD-TYPE" "ECSIT WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"ECSIT WILD-TYPE" "ECSIT WILD-TYPE" "ECSIT WILD-TYPE" "ECSIT WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"ECSIT WILD-TYPE" "ECSIT WILD-TYPE" "ECSIT WILD-TYPE" "ECSIT WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"ECSIT WILD-TYPE" "ECSIT WILD-TYPE" "ECSIT WILD-TYPE" "ECSIT WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
  "ECSIT MUTATED" "ECSIT WILD-TYPE" "ECSIT WILD-TYPE" "ECSIT WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"ECSIT WILD-TYPE" "ECSIT WILD-TYPE"   "ECSIT MUTATED" "ECSIT WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
  "ECSIT MUTATED" "ECSIT WILD-TYPE" "ECSIT WILD-TYPE" "ECSIT WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"ECSIT WILD-TYPE" "ECSIT WILD-TYPE" "ECSIT WILD-TYPE" "ECSIT WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
  "ECSIT MUTATED" "ECSIT WILD-TYPE" "ECSIT WILD-TYPE" "ECSIT WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"ECSIT WILD-TYPE" "ECSIT WILD-TYPE" "ECSIT WILD-TYPE" "ECSIT WILD-TYPE" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"ECSIT WILD-TYPE" "ECSIT WILD-TYPE" "ECSIT WILD-TYPE" "ECSIT WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"ECSIT WILD-TYPE" "ECSIT WILD-TYPE" "ECSIT WILD-TYPE" "ECSIT WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
  "ECSIT MUTATED" "ECSIT WILD-TYPE" "ECSIT WILD-TYPE" "ECSIT WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"ECSIT WILD-TYPE" "ECSIT WILD-TYPE" "ECSIT WILD-TYPE" "ECSIT WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"ECSIT WILD-TYPE" "ECSIT WILD-TYPE" "ECSIT WILD-TYPE" "ECSIT WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"ECSIT WILD-TYPE" "ECSIT WILD-TYPE" "ECSIT WILD-TYPE" "ECSIT WILD-TYPE" 
     TCGA-US-A77J 
"ECSIT WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"ECSIT WILD-TYPE" "ECSIT WILD-TYPE" "ECSIT WILD-TYPE" "ECSIT WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"ECSIT WILD-TYPE" "ECSIT WILD-TYPE" "ECSIT WILD-TYPE" "ECSIT WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"ECSIT WILD-TYPE" "ECSIT WILD-TYPE" "ECSIT WILD-TYPE" "ECSIT WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"ECSIT WILD-TYPE" "ECSIT WILD-TYPE" "ECSIT WILD-TYPE" "ECSIT WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"ECSIT WILD-TYPE" "ECSIT WILD-TYPE" "ECSIT WILD-TYPE" "ECSIT WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
  "ECSIT MUTATED" "ECSIT WILD-TYPE" "ECSIT WILD-TYPE" "ECSIT WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"ECSIT WILD-TYPE" "ECSIT WILD-TYPE"   "ECSIT MUTATED" "ECSIT WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
  "ECSIT MUTATED" "ECSIT WILD-TYPE" "ECSIT WILD-TYPE" "ECSIT WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"ECSIT WILD-TYPE" "ECSIT WILD-TYPE" "ECSIT WILD-TYPE" "ECSIT WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
  "ECSIT MUTATED" "ECSIT WILD-TYPE" "ECSIT WILD-TYPE" "ECSIT WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"ECSIT WILD-TYPE" "ECSIT WILD-TYPE" "ECSIT WILD-TYPE" "ECSIT WILD-TYPE" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"ECSIT WILD-TYPE" "ECSIT WILD-TYPE" "ECSIT WILD-TYPE" "ECSIT WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"ECSIT WILD-TYPE" "ECSIT WILD-TYPE" "ECSIT WILD-TYPE" "ECSIT WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
  "ECSIT MUTATED" "ECSIT WILD-TYPE" "ECSIT WILD-TYPE" "ECSIT WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"ECSIT WILD-TYPE" "ECSIT WILD-TYPE" "ECSIT WILD-TYPE" "ECSIT WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"ECSIT WILD-TYPE" "ECSIT WILD-TYPE" "ECSIT WILD-TYPE" "ECSIT WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"ECSIT WILD-TYPE" "ECSIT WILD-TYPE" "ECSIT WILD-TYPE" "ECSIT WILD-TYPE" 
     TCGA-US-A77J 
"ECSIT WILD-TYPE" 
[1] "hr=" "3.3"
D139V2, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  ECSIT MUTATED          0        1         1         3         1        0
  ECSIT WILD-TYPE        1        3        10        48         1        3
D139V3, multiclass
                 vv
clus              T1+T2 T3+T4
  ECSIT MUTATED       1     5
  ECSIT WILD-TYPE     5    61
D139V4, multiclass
       clus
vv      ECSIT MUTATED ECSIT WILD-TYPE
  T1+T2             1               5
  T3+T4             5              61
D139V5, binary
                 cls
clus               0  1
  ECSIT MUTATED    3  3
  ECSIT WILD-TYPE 14 51
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ECSIT MUTATED      3    3
  ECSIT WILD-TYPE   14   51
   clus
vv  ECSIT MUTATED ECSIT WILD-TYPE
  0             3              14
  1             3              51
                 vv
clus              M0 M1 MX
  ECSIT MUTATED    2  0  4
  ECSIT WILD-TYPE 37  3 26
D139V6, multiclass
    clus
vv   ECSIT MUTATED ECSIT WILD-TYPE
  M0             2              37
  M1             0               3
  MX             4              26
D139V7, binary
                 cls
clus               0  1
  ECSIT MUTATED    2  4
  ECSIT WILD-TYPE 34 32
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ECSIT MUTATED      2    4
  ECSIT WILD-TYPE   34   32
        clus
vv       ECSIT MUTATED ECSIT WILD-TYPE
  FEMALE             2              34
  MALE               4              32
                 vv
clus              PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  ECSIT MUTATED                                     6
  ECSIT WILD-TYPE                                  59
                 vv
clus              PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  ECSIT MUTATED                                       0
  ECSIT WILD-TYPE                                     4
                 vv
clus              PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  ECSIT MUTATED                                                  0
  ECSIT WILD-TYPE                                                2
D139V8, multiclass
                                                  clus
vv                                                 ECSIT MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                          6
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                        0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA             0
                                                  clus
vv                                                 ECSIT WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                           59
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                          4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA               2
D139V9, continuous
D139V10, continuous
                 vv
clus              R0 R1 RX
  ECSIT MUTATED    4  2  0
  ECSIT WILD-TYPE 38 22  2
D139V11, multiclass
    clus
vv   ECSIT MUTATED ECSIT WILD-TYPE
  R0             4              38
  R1             2              22
  RX             0               2
D139V12, continuous

Clustering(140) Variable = PHF14 MUTATION ANALYSIS
D140V1, survival
                 sevent
clus2              0  1
  PHF14 MUTATED    4  3
  PHF14 WILD-TYPE 36 26
  PHF14 MUTATED PHF14 WILD-TYPE 
              7              62 
  PHF14 MUTATED PHF14 WILD-TYPE 
              3              26 
$`PHF14 MUTATED`
TCGA-HZ-7919 TCGA-HZ-8002 TCGA-HZ-A49G TCGA-IB-7651 TCGA-IB-7893 TCGA-IB-7897 
        0.66         0.79         0.76        19.82         3.85        15.98 
TCGA-IB-8126 
        0.56 

$`PHF14 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P5 TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR 
        0.13        11.93        12.66         2.47         0.03         5.46 
TCGA-FZ-5920 TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 
        2.01        36.20        20.81        12.89         7.66        13.02 
TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 
        7.89         0.92         0.13         0.26        12.13        11.87 
TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 
        0.26         0.62         0.69         3.95         0.92         0.53 
TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 
        0.16         2.99         0.95         6.38         1.51        11.41 
TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7652 TCGA-IB-7885 
       49.38         4.77        21.90        15.35        15.65        27.98 
TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 
        4.04         3.62        43.79        15.81        19.66        16.04 
TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST 
       17.16        10.82         9.86         7.20        15.12         0.26 
TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 
        1.35         4.18         3.62         8.12        13.68        16.80 
TCGA-US-A77E TCGA-US-A77J 
       14.14        18.67 

  PHF14 MUTATED PHF14 WILD-TYPE 
           0.56            0.03 
  PHF14 MUTATED PHF14 WILD-TYPE 
          19.82           49.38 
  PHF14 MUTATED PHF14 WILD-TYPE 
          0.790           8.005 
[1] "0.6 - 19.8 (0.8)" "0.0 - 49.4 (8.0)"
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"PHF14 WILD-TYPE" "PHF14 WILD-TYPE" "PHF14 WILD-TYPE" "PHF14 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"PHF14 WILD-TYPE" "PHF14 WILD-TYPE" "PHF14 WILD-TYPE" "PHF14 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"PHF14 WILD-TYPE" "PHF14 WILD-TYPE" "PHF14 WILD-TYPE" "PHF14 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"PHF14 WILD-TYPE" "PHF14 WILD-TYPE" "PHF14 WILD-TYPE" "PHF14 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"PHF14 WILD-TYPE" "PHF14 WILD-TYPE" "PHF14 WILD-TYPE" "PHF14 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
  "PHF14 MUTATED" "PHF14 WILD-TYPE" "PHF14 WILD-TYPE" "PHF14 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"PHF14 WILD-TYPE" "PHF14 WILD-TYPE" "PHF14 WILD-TYPE"   "PHF14 MUTATED" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"PHF14 WILD-TYPE" "PHF14 WILD-TYPE" "PHF14 WILD-TYPE" "PHF14 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"PHF14 WILD-TYPE" "PHF14 WILD-TYPE"   "PHF14 MUTATED" "PHF14 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"PHF14 WILD-TYPE" "PHF14 WILD-TYPE" "PHF14 WILD-TYPE" "PHF14 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"PHF14 WILD-TYPE" "PHF14 WILD-TYPE" "PHF14 WILD-TYPE"   "PHF14 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"PHF14 WILD-TYPE" "PHF14 WILD-TYPE" "PHF14 WILD-TYPE" "PHF14 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"PHF14 WILD-TYPE" "PHF14 WILD-TYPE" "PHF14 WILD-TYPE" "PHF14 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
  "PHF14 MUTATED"   "PHF14 MUTATED"   "PHF14 MUTATED" "PHF14 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"PHF14 WILD-TYPE" "PHF14 WILD-TYPE" "PHF14 WILD-TYPE" "PHF14 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"PHF14 WILD-TYPE" "PHF14 WILD-TYPE" "PHF14 WILD-TYPE" "PHF14 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"PHF14 WILD-TYPE" "PHF14 WILD-TYPE" "PHF14 WILD-TYPE" "PHF14 WILD-TYPE" 
     TCGA-US-A77J 
"PHF14 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"PHF14 WILD-TYPE" "PHF14 WILD-TYPE" "PHF14 WILD-TYPE" "PHF14 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"PHF14 WILD-TYPE" "PHF14 WILD-TYPE" "PHF14 WILD-TYPE" "PHF14 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"PHF14 WILD-TYPE" "PHF14 WILD-TYPE" "PHF14 WILD-TYPE" "PHF14 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"PHF14 WILD-TYPE" "PHF14 WILD-TYPE" "PHF14 WILD-TYPE" "PHF14 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"PHF14 WILD-TYPE" "PHF14 WILD-TYPE" "PHF14 WILD-TYPE" "PHF14 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
  "PHF14 MUTATED" "PHF14 WILD-TYPE" "PHF14 WILD-TYPE" "PHF14 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"PHF14 WILD-TYPE" "PHF14 WILD-TYPE" "PHF14 WILD-TYPE"   "PHF14 MUTATED" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"PHF14 WILD-TYPE" "PHF14 WILD-TYPE" "PHF14 WILD-TYPE" "PHF14 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"PHF14 WILD-TYPE" "PHF14 WILD-TYPE"   "PHF14 MUTATED" "PHF14 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"PHF14 WILD-TYPE" "PHF14 WILD-TYPE" "PHF14 WILD-TYPE" "PHF14 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"PHF14 WILD-TYPE" "PHF14 WILD-TYPE" "PHF14 WILD-TYPE"   "PHF14 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"PHF14 WILD-TYPE" "PHF14 WILD-TYPE" "PHF14 WILD-TYPE" "PHF14 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"PHF14 WILD-TYPE" "PHF14 WILD-TYPE" "PHF14 WILD-TYPE" "PHF14 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
  "PHF14 MUTATED"   "PHF14 MUTATED"   "PHF14 MUTATED" "PHF14 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"PHF14 WILD-TYPE" "PHF14 WILD-TYPE" "PHF14 WILD-TYPE" "PHF14 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"PHF14 WILD-TYPE" "PHF14 WILD-TYPE" "PHF14 WILD-TYPE" "PHF14 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"PHF14 WILD-TYPE" "PHF14 WILD-TYPE" "PHF14 WILD-TYPE" "PHF14 WILD-TYPE" 
     TCGA-US-A77J 
"PHF14 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"PHF14 WILD-TYPE" "PHF14 WILD-TYPE" "PHF14 WILD-TYPE" "PHF14 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"PHF14 WILD-TYPE" "PHF14 WILD-TYPE" "PHF14 WILD-TYPE" "PHF14 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"PHF14 WILD-TYPE" "PHF14 WILD-TYPE" "PHF14 WILD-TYPE" "PHF14 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"PHF14 WILD-TYPE" "PHF14 WILD-TYPE" "PHF14 WILD-TYPE" "PHF14 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"PHF14 WILD-TYPE" "PHF14 WILD-TYPE" "PHF14 WILD-TYPE" "PHF14 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
  "PHF14 MUTATED" "PHF14 WILD-TYPE" "PHF14 WILD-TYPE" "PHF14 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"PHF14 WILD-TYPE" "PHF14 WILD-TYPE" "PHF14 WILD-TYPE"   "PHF14 MUTATED" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"PHF14 WILD-TYPE" "PHF14 WILD-TYPE" "PHF14 WILD-TYPE" "PHF14 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"PHF14 WILD-TYPE" "PHF14 WILD-TYPE"   "PHF14 MUTATED" "PHF14 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"PHF14 WILD-TYPE" "PHF14 WILD-TYPE" "PHF14 WILD-TYPE" "PHF14 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"PHF14 WILD-TYPE" "PHF14 WILD-TYPE" "PHF14 WILD-TYPE"   "PHF14 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"PHF14 WILD-TYPE" "PHF14 WILD-TYPE" "PHF14 WILD-TYPE" "PHF14 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"PHF14 WILD-TYPE" "PHF14 WILD-TYPE" "PHF14 WILD-TYPE" "PHF14 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
  "PHF14 MUTATED"   "PHF14 MUTATED"   "PHF14 MUTATED" "PHF14 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"PHF14 WILD-TYPE" "PHF14 WILD-TYPE" "PHF14 WILD-TYPE" "PHF14 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"PHF14 WILD-TYPE" "PHF14 WILD-TYPE" "PHF14 WILD-TYPE" "PHF14 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"PHF14 WILD-TYPE" "PHF14 WILD-TYPE" "PHF14 WILD-TYPE" "PHF14 WILD-TYPE" 
     TCGA-US-A77J 
"PHF14 WILD-TYPE" 
[1] "hr=" "1.6"
D140V2, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  PHF14 MUTATED          0        0         1         5         1        0
  PHF14 WILD-TYPE        1        4        10        46         1        3
D140V3, multiclass
                 vv
clus              T1+T2 T3+T4
  PHF14 MUTATED       1     6
  PHF14 WILD-TYPE     5    60
D140V4, multiclass
       clus
vv      PHF14 MUTATED PHF14 WILD-TYPE
  T1+T2             1               5
  T3+T4             6              60
D140V5, binary
                 cls
clus               0  1
  PHF14 MUTATED    1  6
  PHF14 WILD-TYPE 16 48
[1] "tbl2"
                 cls
clus              [,1] [,2]
  PHF14 MUTATED      1    6
  PHF14 WILD-TYPE   16   48
   clus
vv  PHF14 MUTATED PHF14 WILD-TYPE
  0             1              16
  1             6              48
                 vv
clus              M0 M1 MX
  PHF14 MUTATED    5  0  2
  PHF14 WILD-TYPE 34  3 28
D140V6, multiclass
    clus
vv   PHF14 MUTATED PHF14 WILD-TYPE
  M0             5              34
  M1             0               3
  MX             2              28
D140V7, binary
                 cls
clus               0  1
  PHF14 MUTATED    5  2
  PHF14 WILD-TYPE 31 34
[1] "tbl2"
                 cls
clus              [,1] [,2]
  PHF14 MUTATED      5    2
  PHF14 WILD-TYPE   31   34
        clus
vv       PHF14 MUTATED PHF14 WILD-TYPE
  FEMALE             5              31
  MALE               2              34
                 vv
clus              PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  PHF14 MUTATED                                     7
  PHF14 WILD-TYPE                                  58
                 vv
clus              PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  PHF14 MUTATED                                       0
  PHF14 WILD-TYPE                                     4
                 vv
clus              PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  PHF14 MUTATED                                                  0
  PHF14 WILD-TYPE                                                2
D140V8, multiclass
                                                  clus
vv                                                 PHF14 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                          7
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                        0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA             0
                                                  clus
vv                                                 PHF14 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                           58
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                          4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA               2
D140V9, continuous
[1] "Remove cluster labels:" "PHF14 MUTATED"         
clus
  PHF14 MUTATED PHF14 WILD-TYPE 
              2              20 
     TCGA-F2-6880      TCGA-FB-A4P5      TCGA-FB-A4P6      TCGA-FB-A5VM 
"PHF14 WILD-TYPE" "PHF14 WILD-TYPE" "PHF14 WILD-TYPE" "PHF14 WILD-TYPE" 
     TCGA-FB-A78T      TCGA-FB-A7DR      TCGA-H6-8124      TCGA-H6-A45N 
"PHF14 WILD-TYPE" "PHF14 WILD-TYPE" "PHF14 WILD-TYPE" "PHF14 WILD-TYPE" 
     TCGA-H8-A6C1      TCGA-IB-7644      TCGA-IB-7649      TCGA-IB-7885 
"PHF14 WILD-TYPE" "PHF14 WILD-TYPE" "PHF14 WILD-TYPE" "PHF14 WILD-TYPE" 
     TCGA-IB-7886      TCGA-IB-7887      TCGA-IB-7891      TCGA-IB-8127 
"PHF14 WILD-TYPE" "PHF14 WILD-TYPE" "PHF14 WILD-TYPE" "PHF14 WILD-TYPE" 
     TCGA-IB-A5SS      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"PHF14 WILD-TYPE" "PHF14 WILD-TYPE" "PHF14 WILD-TYPE" "PHF14 WILD-TYPE" 
D140V10, continuous
[1] "Remove cluster labels:" "PHF14 MUTATED"         
clus
  PHF14 MUTATED PHF14 WILD-TYPE 
              2              17 
     TCGA-FB-A4P5      TCGA-FB-A4P6      TCGA-FB-A5VM      TCGA-FB-A78T 
"PHF14 WILD-TYPE" "PHF14 WILD-TYPE" "PHF14 WILD-TYPE" "PHF14 WILD-TYPE" 
     TCGA-FB-A7DR      TCGA-H6-8124      TCGA-H8-A6C1      TCGA-IB-7644 
"PHF14 WILD-TYPE" "PHF14 WILD-TYPE" "PHF14 WILD-TYPE" "PHF14 WILD-TYPE" 
     TCGA-IB-7649      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7891 
"PHF14 WILD-TYPE" "PHF14 WILD-TYPE" "PHF14 WILD-TYPE" "PHF14 WILD-TYPE" 
     TCGA-IB-8127      TCGA-IB-A5SS      TCGA-IB-A6UG      TCGA-LB-A7SX 
"PHF14 WILD-TYPE" "PHF14 WILD-TYPE" "PHF14 WILD-TYPE" "PHF14 WILD-TYPE" 
     TCGA-OE-A75W 
"PHF14 WILD-TYPE" 
                 vv
clus              R0 R1 RX
  PHF14 MUTATED    4  3  0
  PHF14 WILD-TYPE 38 21  2
D140V11, multiclass
    clus
vv   PHF14 MUTATED PHF14 WILD-TYPE
  R0             4              38
  R1             3              21
  RX             0               2
D140V12, continuous

Clustering(141) Variable = PHF13 MUTATION ANALYSIS
D141V1, survival
                 sevent
clus2              0  1
  PHF13 MUTATED    6  6
  PHF13 WILD-TYPE 34 23
  PHF13 MUTATED PHF13 WILD-TYPE 
             12              57 
  PHF13 MUTATED PHF13 WILD-TYPE 
              6              23 
$`PHF13 MUTATED`
TCGA-H6-A45N TCGA-HZ-7289 TCGA-HZ-7919 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-IB-7644 
        7.66         7.89         0.66         0.26        12.13        11.41 
TCGA-IB-7646 TCGA-IB-7649 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7891 TCGA-LB-A7SX 
        4.77        15.35         3.62        43.79        16.04         4.18 

$`PHF13 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P5 TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR 
        0.13        11.93        12.66         2.47         0.03         5.46 
TCGA-FZ-5920 TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 TCGA-H8-A6C1 TCGA-HZ-7918 
        2.01        36.20        20.81        12.89        13.02         0.92 
TCGA-HZ-7922 TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 
        0.13        11.87         0.26         0.62         0.79         0.69 
TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G 
        3.95         0.92         0.53         0.16         2.99         0.76 
TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7645 TCGA-IB-7647 TCGA-IB-7651 
        0.95         6.38         1.51        49.38        21.90        19.82 
TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7893 
       15.65        27.98         4.04        15.81        19.66         3.85 
TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ 
       15.98         0.56        17.16        10.82         9.86         7.20 
TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-OE-A75W TCGA-PZ-A5RE TCGA-Q3-A5QY 
       15.12         0.26         1.35         3.62         8.12        13.68 
TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
       16.80        14.14        18.67 

  PHF13 MUTATED PHF13 WILD-TYPE 
           0.26            0.03 
  PHF13 MUTATED PHF13 WILD-TYPE 
          43.79           49.38 
  PHF13 MUTATED PHF13 WILD-TYPE 
          7.775           7.200 
[1] "0.3 - 43.8 (7.8)" "0.0 - 49.4 (7.2)"
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"PHF13 WILD-TYPE" "PHF13 WILD-TYPE" "PHF13 WILD-TYPE" "PHF13 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"PHF13 WILD-TYPE" "PHF13 WILD-TYPE" "PHF13 WILD-TYPE" "PHF13 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"PHF13 WILD-TYPE" "PHF13 WILD-TYPE" "PHF13 WILD-TYPE" "PHF13 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"PHF13 WILD-TYPE" "PHF13 WILD-TYPE" "PHF13 WILD-TYPE" "PHF13 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
  "PHF13 MUTATED" "PHF13 WILD-TYPE"   "PHF13 MUTATED" "PHF13 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
  "PHF13 MUTATED" "PHF13 WILD-TYPE"   "PHF13 MUTATED"   "PHF13 MUTATED" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"PHF13 WILD-TYPE" "PHF13 WILD-TYPE" "PHF13 WILD-TYPE" "PHF13 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"PHF13 WILD-TYPE" "PHF13 WILD-TYPE" "PHF13 WILD-TYPE" "PHF13 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"PHF13 WILD-TYPE" "PHF13 WILD-TYPE" "PHF13 WILD-TYPE" "PHF13 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"PHF13 WILD-TYPE" "PHF13 WILD-TYPE"   "PHF13 MUTATED" "PHF13 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
  "PHF13 MUTATED" "PHF13 WILD-TYPE"   "PHF13 MUTATED" "PHF13 WILD-TYPE" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"PHF13 WILD-TYPE" "PHF13 WILD-TYPE" "PHF13 WILD-TYPE"   "PHF13 MUTATED" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
  "PHF13 MUTATED" "PHF13 WILD-TYPE" "PHF13 WILD-TYPE"   "PHF13 MUTATED" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"PHF13 WILD-TYPE" "PHF13 WILD-TYPE" "PHF13 WILD-TYPE" "PHF13 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"PHF13 WILD-TYPE" "PHF13 WILD-TYPE" "PHF13 WILD-TYPE" "PHF13 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"PHF13 WILD-TYPE" "PHF13 WILD-TYPE"   "PHF13 MUTATED" "PHF13 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"PHF13 WILD-TYPE" "PHF13 WILD-TYPE" "PHF13 WILD-TYPE" "PHF13 WILD-TYPE" 
     TCGA-US-A77J 
"PHF13 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"PHF13 WILD-TYPE" "PHF13 WILD-TYPE" "PHF13 WILD-TYPE" "PHF13 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"PHF13 WILD-TYPE" "PHF13 WILD-TYPE" "PHF13 WILD-TYPE" "PHF13 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"PHF13 WILD-TYPE" "PHF13 WILD-TYPE" "PHF13 WILD-TYPE" "PHF13 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"PHF13 WILD-TYPE" "PHF13 WILD-TYPE" "PHF13 WILD-TYPE" "PHF13 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
  "PHF13 MUTATED" "PHF13 WILD-TYPE"   "PHF13 MUTATED" "PHF13 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
  "PHF13 MUTATED" "PHF13 WILD-TYPE"   "PHF13 MUTATED"   "PHF13 MUTATED" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"PHF13 WILD-TYPE" "PHF13 WILD-TYPE" "PHF13 WILD-TYPE" "PHF13 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"PHF13 WILD-TYPE" "PHF13 WILD-TYPE" "PHF13 WILD-TYPE" "PHF13 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"PHF13 WILD-TYPE" "PHF13 WILD-TYPE" "PHF13 WILD-TYPE" "PHF13 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"PHF13 WILD-TYPE" "PHF13 WILD-TYPE"   "PHF13 MUTATED" "PHF13 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
  "PHF13 MUTATED" "PHF13 WILD-TYPE"   "PHF13 MUTATED" "PHF13 WILD-TYPE" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"PHF13 WILD-TYPE" "PHF13 WILD-TYPE" "PHF13 WILD-TYPE"   "PHF13 MUTATED" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
  "PHF13 MUTATED" "PHF13 WILD-TYPE" "PHF13 WILD-TYPE"   "PHF13 MUTATED" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"PHF13 WILD-TYPE" "PHF13 WILD-TYPE" "PHF13 WILD-TYPE" "PHF13 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"PHF13 WILD-TYPE" "PHF13 WILD-TYPE" "PHF13 WILD-TYPE" "PHF13 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"PHF13 WILD-TYPE" "PHF13 WILD-TYPE"   "PHF13 MUTATED" "PHF13 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"PHF13 WILD-TYPE" "PHF13 WILD-TYPE" "PHF13 WILD-TYPE" "PHF13 WILD-TYPE" 
     TCGA-US-A77J 
"PHF13 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"PHF13 WILD-TYPE" "PHF13 WILD-TYPE" "PHF13 WILD-TYPE" "PHF13 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"PHF13 WILD-TYPE" "PHF13 WILD-TYPE" "PHF13 WILD-TYPE" "PHF13 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"PHF13 WILD-TYPE" "PHF13 WILD-TYPE" "PHF13 WILD-TYPE" "PHF13 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"PHF13 WILD-TYPE" "PHF13 WILD-TYPE" "PHF13 WILD-TYPE" "PHF13 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
  "PHF13 MUTATED" "PHF13 WILD-TYPE"   "PHF13 MUTATED" "PHF13 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
  "PHF13 MUTATED" "PHF13 WILD-TYPE"   "PHF13 MUTATED"   "PHF13 MUTATED" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"PHF13 WILD-TYPE" "PHF13 WILD-TYPE" "PHF13 WILD-TYPE" "PHF13 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"PHF13 WILD-TYPE" "PHF13 WILD-TYPE" "PHF13 WILD-TYPE" "PHF13 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"PHF13 WILD-TYPE" "PHF13 WILD-TYPE" "PHF13 WILD-TYPE" "PHF13 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"PHF13 WILD-TYPE" "PHF13 WILD-TYPE"   "PHF13 MUTATED" "PHF13 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
  "PHF13 MUTATED" "PHF13 WILD-TYPE"   "PHF13 MUTATED" "PHF13 WILD-TYPE" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"PHF13 WILD-TYPE" "PHF13 WILD-TYPE" "PHF13 WILD-TYPE"   "PHF13 MUTATED" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
  "PHF13 MUTATED" "PHF13 WILD-TYPE" "PHF13 WILD-TYPE"   "PHF13 MUTATED" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"PHF13 WILD-TYPE" "PHF13 WILD-TYPE" "PHF13 WILD-TYPE" "PHF13 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"PHF13 WILD-TYPE" "PHF13 WILD-TYPE" "PHF13 WILD-TYPE" "PHF13 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"PHF13 WILD-TYPE" "PHF13 WILD-TYPE"   "PHF13 MUTATED" "PHF13 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"PHF13 WILD-TYPE" "PHF13 WILD-TYPE" "PHF13 WILD-TYPE" "PHF13 WILD-TYPE" 
     TCGA-US-A77J 
"PHF13 WILD-TYPE" 
[1] "hr=" "1.2"
D141V2, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  PHF13 MUTATED          0        0         3         8         0        1
  PHF13 WILD-TYPE        1        4         8        43         2        2
D141V3, multiclass
                 vv
clus              T1+T2 T3+T4
  PHF13 MUTATED       0    12
  PHF13 WILD-TYPE     6    54
D141V4, multiclass
       clus
vv      PHF13 MUTATED PHF13 WILD-TYPE
  T1+T2             0               6
  T3+T4            12              54
D141V5, binary
                 cls
clus               0  1
  PHF13 MUTATED    3  9
  PHF13 WILD-TYPE 14 45
[1] "tbl2"
                 cls
clus              [,1] [,2]
  PHF13 MUTATED      3    9
  PHF13 WILD-TYPE   14   45
   clus
vv  PHF13 MUTATED PHF13 WILD-TYPE
  0             3              14
  1             9              45
                 vv
clus              M0 M1 MX
  PHF13 MUTATED    6  1  5
  PHF13 WILD-TYPE 33  2 25
D141V6, multiclass
    clus
vv   PHF13 MUTATED PHF13 WILD-TYPE
  M0             6              33
  M1             1               2
  MX             5              25
D141V7, binary
                 cls
clus               0  1
  PHF13 MUTATED    8  4
  PHF13 WILD-TYPE 28 32
[1] "tbl2"
                 cls
clus              [,1] [,2]
  PHF13 MUTATED      8    4
  PHF13 WILD-TYPE   28   32
        clus
vv       PHF13 MUTATED PHF13 WILD-TYPE
  FEMALE             8              28
  MALE               4              32
                 vv
clus              PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  PHF13 MUTATED                                    10
  PHF13 WILD-TYPE                                  55
                 vv
clus              PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  PHF13 MUTATED                                       2
  PHF13 WILD-TYPE                                     2
                 vv
clus              PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  PHF13 MUTATED                                                  0
  PHF13 WILD-TYPE                                                2
D141V8, multiclass
                                                  clus
vv                                                 PHF13 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                         10
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                        2
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA             0
                                                  clus
vv                                                 PHF13 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                           55
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                          2
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA               2
D141V9, continuous
D141V10, continuous
                 vv
clus              R0 R1 RX
  PHF13 MUTATED    4  6  1
  PHF13 WILD-TYPE 38 18  1
D141V11, multiclass
    clus
vv   PHF13 MUTATED PHF13 WILD-TYPE
  R0             4              38
  R1             6              18
  RX             1               1
D141V12, continuous

Clustering(142) Variable = SLC6A9 MUTATION ANALYSIS
D142V1, survival
                  sevent
clus2               0  1
  SLC6A9 MUTATED    5  1
  SLC6A9 WILD-TYPE 35 28
  SLC6A9 MUTATED SLC6A9 WILD-TYPE 
               6               63 
  SLC6A9 MUTATED SLC6A9 WILD-TYPE 
               1               28 
$`SLC6A9 MUTATED`
TCGA-F2-7276 TCGA-F2-A44H TCGA-FB-A4P6 TCGA-H6-8124 TCGA-HZ-7289 TCGA-HZ-8638 
        7.10        19.27        11.93        12.89         7.89         2.99 

$`SLC6A9 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-A44G TCGA-FB-A4P5 TCGA-FB-A545 
       10.98         9.70        11.84         5.03         0.13        12.66 
TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR TCGA-FZ-5920 TCGA-FZ-5922 TCGA-FZ-5923 
        2.47         0.03         5.46         2.01        36.20        20.81 
TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 
        7.66        13.02         0.92         0.66         0.13         0.26 
TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 
       12.13        11.87         0.26         0.62         0.79         0.69 
TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8636 TCGA-HZ-A49G TCGA-HZ-A49H 
        3.95         0.92         0.53         0.16         0.76         0.95 
TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 
        6.38         1.51        11.41        49.38         4.77        21.90 
TCGA-IB-7649 TCGA-IB-7651 TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 
       15.35        19.82        15.65        27.98         4.04         3.62 
TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-7897 
       43.79        15.81        19.66        16.04         3.85        15.98 
TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS 
        0.56        17.16        10.82         9.86         7.20        15.12 
TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W TCGA-PZ-A5RE TCGA-Q3-A5QY 
        0.26         1.35         4.18         3.62         8.12        13.68 
TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
       16.80        14.14        18.67 

  SLC6A9 MUTATED SLC6A9 WILD-TYPE 
            2.99             0.03 
  SLC6A9 MUTATED SLC6A9 WILD-TYPE 
           19.27            49.38 
  SLC6A9 MUTATED SLC6A9 WILD-TYPE 
            9.91             7.20 
[1] "3.0 - 19.3 (9.9)" "0.0 - 49.4 (7.2)"
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
"SLC6A9 WILD-TYPE" "SLC6A9 WILD-TYPE" "SLC6A9 WILD-TYPE"   "SLC6A9 MUTATED" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"SLC6A9 WILD-TYPE"   "SLC6A9 MUTATED" "SLC6A9 WILD-TYPE"   "SLC6A9 MUTATED" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
"SLC6A9 WILD-TYPE" "SLC6A9 WILD-TYPE" "SLC6A9 WILD-TYPE" "SLC6A9 WILD-TYPE" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"SLC6A9 WILD-TYPE" "SLC6A9 WILD-TYPE" "SLC6A9 WILD-TYPE"   "SLC6A9 MUTATED" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
"SLC6A9 WILD-TYPE" "SLC6A9 WILD-TYPE"   "SLC6A9 MUTATED" "SLC6A9 WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
"SLC6A9 WILD-TYPE" "SLC6A9 WILD-TYPE" "SLC6A9 WILD-TYPE" "SLC6A9 WILD-TYPE" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"SLC6A9 WILD-TYPE" "SLC6A9 WILD-TYPE" "SLC6A9 WILD-TYPE" "SLC6A9 WILD-TYPE" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
"SLC6A9 WILD-TYPE" "SLC6A9 WILD-TYPE" "SLC6A9 WILD-TYPE" "SLC6A9 WILD-TYPE" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
"SLC6A9 WILD-TYPE"   "SLC6A9 MUTATED" "SLC6A9 WILD-TYPE" "SLC6A9 WILD-TYPE" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
"SLC6A9 WILD-TYPE" "SLC6A9 WILD-TYPE" "SLC6A9 WILD-TYPE" "SLC6A9 WILD-TYPE" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
"SLC6A9 WILD-TYPE" "SLC6A9 WILD-TYPE" "SLC6A9 WILD-TYPE" "SLC6A9 WILD-TYPE" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
"SLC6A9 WILD-TYPE" "SLC6A9 WILD-TYPE" "SLC6A9 WILD-TYPE" "SLC6A9 WILD-TYPE" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
"SLC6A9 WILD-TYPE" "SLC6A9 WILD-TYPE" "SLC6A9 WILD-TYPE" "SLC6A9 WILD-TYPE" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
"SLC6A9 WILD-TYPE" "SLC6A9 WILD-TYPE" "SLC6A9 WILD-TYPE" "SLC6A9 WILD-TYPE" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"SLC6A9 WILD-TYPE" "SLC6A9 WILD-TYPE" "SLC6A9 WILD-TYPE" "SLC6A9 WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"SLC6A9 WILD-TYPE" "SLC6A9 WILD-TYPE" "SLC6A9 WILD-TYPE" "SLC6A9 WILD-TYPE" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
"SLC6A9 WILD-TYPE" "SLC6A9 WILD-TYPE" "SLC6A9 WILD-TYPE" "SLC6A9 WILD-TYPE" 
      TCGA-US-A77J 
"SLC6A9 WILD-TYPE" 
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
"SLC6A9 WILD-TYPE" "SLC6A9 WILD-TYPE" "SLC6A9 WILD-TYPE"   "SLC6A9 MUTATED" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"SLC6A9 WILD-TYPE"   "SLC6A9 MUTATED" "SLC6A9 WILD-TYPE"   "SLC6A9 MUTATED" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
"SLC6A9 WILD-TYPE" "SLC6A9 WILD-TYPE" "SLC6A9 WILD-TYPE" "SLC6A9 WILD-TYPE" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"SLC6A9 WILD-TYPE" "SLC6A9 WILD-TYPE" "SLC6A9 WILD-TYPE"   "SLC6A9 MUTATED" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
"SLC6A9 WILD-TYPE" "SLC6A9 WILD-TYPE"   "SLC6A9 MUTATED" "SLC6A9 WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
"SLC6A9 WILD-TYPE" "SLC6A9 WILD-TYPE" "SLC6A9 WILD-TYPE" "SLC6A9 WILD-TYPE" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"SLC6A9 WILD-TYPE" "SLC6A9 WILD-TYPE" "SLC6A9 WILD-TYPE" "SLC6A9 WILD-TYPE" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
"SLC6A9 WILD-TYPE" "SLC6A9 WILD-TYPE" "SLC6A9 WILD-TYPE" "SLC6A9 WILD-TYPE" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
"SLC6A9 WILD-TYPE"   "SLC6A9 MUTATED" "SLC6A9 WILD-TYPE" "SLC6A9 WILD-TYPE" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
"SLC6A9 WILD-TYPE" "SLC6A9 WILD-TYPE" "SLC6A9 WILD-TYPE" "SLC6A9 WILD-TYPE" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
"SLC6A9 WILD-TYPE" "SLC6A9 WILD-TYPE" "SLC6A9 WILD-TYPE" "SLC6A9 WILD-TYPE" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
"SLC6A9 WILD-TYPE" "SLC6A9 WILD-TYPE" "SLC6A9 WILD-TYPE" "SLC6A9 WILD-TYPE" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
"SLC6A9 WILD-TYPE" "SLC6A9 WILD-TYPE" "SLC6A9 WILD-TYPE" "SLC6A9 WILD-TYPE" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
"SLC6A9 WILD-TYPE" "SLC6A9 WILD-TYPE" "SLC6A9 WILD-TYPE" "SLC6A9 WILD-TYPE" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"SLC6A9 WILD-TYPE" "SLC6A9 WILD-TYPE" "SLC6A9 WILD-TYPE" "SLC6A9 WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"SLC6A9 WILD-TYPE" "SLC6A9 WILD-TYPE" "SLC6A9 WILD-TYPE" "SLC6A9 WILD-TYPE" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
"SLC6A9 WILD-TYPE" "SLC6A9 WILD-TYPE" "SLC6A9 WILD-TYPE" "SLC6A9 WILD-TYPE" 
      TCGA-US-A77J 
"SLC6A9 WILD-TYPE" 
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
"SLC6A9 WILD-TYPE" "SLC6A9 WILD-TYPE" "SLC6A9 WILD-TYPE"   "SLC6A9 MUTATED" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"SLC6A9 WILD-TYPE"   "SLC6A9 MUTATED" "SLC6A9 WILD-TYPE"   "SLC6A9 MUTATED" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
"SLC6A9 WILD-TYPE" "SLC6A9 WILD-TYPE" "SLC6A9 WILD-TYPE" "SLC6A9 WILD-TYPE" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"SLC6A9 WILD-TYPE" "SLC6A9 WILD-TYPE" "SLC6A9 WILD-TYPE"   "SLC6A9 MUTATED" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
"SLC6A9 WILD-TYPE" "SLC6A9 WILD-TYPE"   "SLC6A9 MUTATED" "SLC6A9 WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
"SLC6A9 WILD-TYPE" "SLC6A9 WILD-TYPE" "SLC6A9 WILD-TYPE" "SLC6A9 WILD-TYPE" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"SLC6A9 WILD-TYPE" "SLC6A9 WILD-TYPE" "SLC6A9 WILD-TYPE" "SLC6A9 WILD-TYPE" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
"SLC6A9 WILD-TYPE" "SLC6A9 WILD-TYPE" "SLC6A9 WILD-TYPE" "SLC6A9 WILD-TYPE" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
"SLC6A9 WILD-TYPE"   "SLC6A9 MUTATED" "SLC6A9 WILD-TYPE" "SLC6A9 WILD-TYPE" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
"SLC6A9 WILD-TYPE" "SLC6A9 WILD-TYPE" "SLC6A9 WILD-TYPE" "SLC6A9 WILD-TYPE" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
"SLC6A9 WILD-TYPE" "SLC6A9 WILD-TYPE" "SLC6A9 WILD-TYPE" "SLC6A9 WILD-TYPE" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
"SLC6A9 WILD-TYPE" "SLC6A9 WILD-TYPE" "SLC6A9 WILD-TYPE" "SLC6A9 WILD-TYPE" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
"SLC6A9 WILD-TYPE" "SLC6A9 WILD-TYPE" "SLC6A9 WILD-TYPE" "SLC6A9 WILD-TYPE" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
"SLC6A9 WILD-TYPE" "SLC6A9 WILD-TYPE" "SLC6A9 WILD-TYPE" "SLC6A9 WILD-TYPE" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"SLC6A9 WILD-TYPE" "SLC6A9 WILD-TYPE" "SLC6A9 WILD-TYPE" "SLC6A9 WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"SLC6A9 WILD-TYPE" "SLC6A9 WILD-TYPE" "SLC6A9 WILD-TYPE" "SLC6A9 WILD-TYPE" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
"SLC6A9 WILD-TYPE" "SLC6A9 WILD-TYPE" "SLC6A9 WILD-TYPE" "SLC6A9 WILD-TYPE" 
      TCGA-US-A77J 
"SLC6A9 WILD-TYPE" 
[1] "hr=" "2.3"
D142V2, continuous
                  vv
clus               STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  SLC6A9 MUTATED          1        0         1         5         0        0
  SLC6A9 WILD-TYPE        0        4        10        46         2        3
D142V3, multiclass
                  vv
clus               T1+T2 T3+T4
  SLC6A9 MUTATED       1     6
  SLC6A9 WILD-TYPE     5    60
D142V4, multiclass
       clus
vv      SLC6A9 MUTATED SLC6A9 WILD-TYPE
  T1+T2              1                5
  T3+T4              6               60
D142V5, binary
                  cls
clus                0  1
  SLC6A9 MUTATED    2  5
  SLC6A9 WILD-TYPE 15 49
[1] "tbl2"
                  cls
clus               [,1] [,2]
  SLC6A9 MUTATED      2    5
  SLC6A9 WILD-TYPE   15   49
   clus
vv  SLC6A9 MUTATED SLC6A9 WILD-TYPE
  0              2               15
  1              5               49
                  vv
clus               M0 M1 MX
  SLC6A9 MUTATED    3  0  4
  SLC6A9 WILD-TYPE 36  3 26
D142V6, multiclass
    clus
vv   SLC6A9 MUTATED SLC6A9 WILD-TYPE
  M0              3               36
  M1              0                3
  MX              4               26
D142V7, binary
                  cls
clus                0  1
  SLC6A9 MUTATED    3  4
  SLC6A9 WILD-TYPE 33 32
[1] "tbl2"
                  cls
clus               [,1] [,2]
  SLC6A9 MUTATED      3    4
  SLC6A9 WILD-TYPE   33   32
        clus
vv       SLC6A9 MUTATED SLC6A9 WILD-TYPE
  FEMALE              3               33
  MALE                4               32
                  vv
clus               PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  SLC6A9 MUTATED                                     5
  SLC6A9 WILD-TYPE                                  60
                  vv
clus               PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  SLC6A9 MUTATED                                       1
  SLC6A9 WILD-TYPE                                     3
                  vv
clus               PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  SLC6A9 MUTATED                                                  1
  SLC6A9 WILD-TYPE                                                1
D142V8, multiclass
                                                  clus
vv                                                 SLC6A9 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                           5
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                         1
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA              1
                                                  clus
vv                                                 SLC6A9 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                            60
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                           3
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                1
D142V9, continuous
[1] "Remove cluster labels:" "SLC6A9 MUTATED"        
clus
  SLC6A9 MUTATED SLC6A9 WILD-TYPE 
               2               20 
      TCGA-F2-6880       TCGA-FB-A4P5       TCGA-FB-A5VM       TCGA-FB-A78T 
"SLC6A9 WILD-TYPE" "SLC6A9 WILD-TYPE" "SLC6A9 WILD-TYPE" "SLC6A9 WILD-TYPE" 
      TCGA-FB-A7DR       TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-IB-7644 
"SLC6A9 WILD-TYPE" "SLC6A9 WILD-TYPE" "SLC6A9 WILD-TYPE" "SLC6A9 WILD-TYPE" 
      TCGA-IB-7649       TCGA-IB-7651       TCGA-IB-7885       TCGA-IB-7886 
"SLC6A9 WILD-TYPE" "SLC6A9 WILD-TYPE" "SLC6A9 WILD-TYPE" "SLC6A9 WILD-TYPE" 
      TCGA-IB-7887       TCGA-IB-7891       TCGA-IB-8126       TCGA-IB-8127 
"SLC6A9 WILD-TYPE" "SLC6A9 WILD-TYPE" "SLC6A9 WILD-TYPE" "SLC6A9 WILD-TYPE" 
      TCGA-IB-A5SS       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"SLC6A9 WILD-TYPE" "SLC6A9 WILD-TYPE" "SLC6A9 WILD-TYPE" "SLC6A9 WILD-TYPE" 
D142V10, continuous
[1] "Remove cluster labels:" "SLC6A9 MUTATED"        
clus
  SLC6A9 MUTATED SLC6A9 WILD-TYPE 
               2               17 
      TCGA-FB-A4P5       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
"SLC6A9 WILD-TYPE" "SLC6A9 WILD-TYPE" "SLC6A9 WILD-TYPE" "SLC6A9 WILD-TYPE" 
      TCGA-H8-A6C1       TCGA-IB-7644       TCGA-IB-7649       TCGA-IB-7651 
"SLC6A9 WILD-TYPE" "SLC6A9 WILD-TYPE" "SLC6A9 WILD-TYPE" "SLC6A9 WILD-TYPE" 
      TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7891       TCGA-IB-8126 
"SLC6A9 WILD-TYPE" "SLC6A9 WILD-TYPE" "SLC6A9 WILD-TYPE" "SLC6A9 WILD-TYPE" 
      TCGA-IB-8127       TCGA-IB-A5SS       TCGA-IB-A6UG       TCGA-LB-A7SX 
"SLC6A9 WILD-TYPE" "SLC6A9 WILD-TYPE" "SLC6A9 WILD-TYPE" "SLC6A9 WILD-TYPE" 
      TCGA-OE-A75W 
"SLC6A9 WILD-TYPE" 
                  vv
clus               R0 R1 RX
  SLC6A9 MUTATED    5  0  1
  SLC6A9 WILD-TYPE 37 24  1
D142V11, multiclass
    clus
vv   SLC6A9 MUTATED SLC6A9 WILD-TYPE
  R0              5               37
  R1              0               24
  RX              1                1
D142V12, continuous

Clustering(143) Variable = STK19 MUTATION ANALYSIS
D143V1, survival
                 sevent
clus2              0  1
  STK19 MUTATED    3  2
  STK19 WILD-TYPE 37 27
  STK19 MUTATED STK19 WILD-TYPE 
              5              64 
  STK19 MUTATED STK19 WILD-TYPE 
              2              27 
$`STK19 MUTATED`
TCGA-HZ-7919 TCGA-HZ-8317 TCGA-IB-7888 TCGA-IB-8127 TCGA-US-A77J 
        0.66         0.53        43.79        17.16        18.67 

$`STK19 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P5 TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR 
        0.13        11.93        12.66         2.47         0.03         5.46 
TCGA-FZ-5920 TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 
        2.01        36.20        20.81        12.89         7.66        13.02 
TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 
        7.89         0.92         0.13         0.26        12.13        11.87 
TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 
        0.26         0.62         0.79         0.69         3.95         0.92 
TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK 
        0.16         2.99         0.76         0.95         6.38         1.51 
TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7651 
       11.41        49.38         4.77        21.90        15.35        19.82 
TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7889 TCGA-IB-7890 
       15.65        27.98         4.04         3.62        15.81        19.66 
TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-A5SO TCGA-IB-A5SP 
       16.04         3.85        15.98         0.56        10.82         9.86 
TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W 
        7.20        15.12         0.26         1.35         4.18         3.62 
TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E 
        8.12        13.68        16.80        14.14 

  STK19 MUTATED STK19 WILD-TYPE 
           0.53            0.03 
  STK19 MUTATED STK19 WILD-TYPE 
          43.79           49.38 
  STK19 MUTATED STK19 WILD-TYPE 
          17.16            7.43 
[1] "0.5 - 43.8 (17.2)" "0.0 - 49.4 (7.4)" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
  "STK19 MUTATED" "STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE"   "STK19 MUTATED" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
  "STK19 MUTATED" "STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE"   "STK19 MUTATED" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" 
     TCGA-US-A77J 
  "STK19 MUTATED" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
  "STK19 MUTATED" "STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE"   "STK19 MUTATED" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
  "STK19 MUTATED" "STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE"   "STK19 MUTATED" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" 
     TCGA-US-A77J 
  "STK19 MUTATED" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
  "STK19 MUTATED" "STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE"   "STK19 MUTATED" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
  "STK19 MUTATED" "STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE"   "STK19 MUTATED" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" 
     TCGA-US-A77J 
  "STK19 MUTATED" 
[1] "hr=" "2.3"
D143V2, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  STK19 MUTATED          0        0         1         4         0        0
  STK19 WILD-TYPE        1        4        10        47         2        3
D143V3, multiclass
                 vv
clus              T1+T2 T3+T4
  STK19 MUTATED       0     5
  STK19 WILD-TYPE     6    61
D143V4, multiclass
       clus
vv      STK19 MUTATED STK19 WILD-TYPE
  T1+T2             0               6
  T3+T4             5              61
D143V5, binary
                 cls
clus               0  1
  STK19 MUTATED    1  4
  STK19 WILD-TYPE 16 50
[1] "tbl2"
                 cls
clus              [,1] [,2]
  STK19 MUTATED      1    4
  STK19 WILD-TYPE   16   50
   clus
vv  STK19 MUTATED STK19 WILD-TYPE
  0             1              16
  1             4              50
                 vv
clus              M0 M1 MX
  STK19 MUTATED    3  0  2
  STK19 WILD-TYPE 36  3 28
D143V6, multiclass
    clus
vv   STK19 MUTATED STK19 WILD-TYPE
  M0             3              36
  M1             0               3
  MX             2              28
D143V7, binary
                 cls
clus               0  1
  STK19 MUTATED    4  1
  STK19 WILD-TYPE 32 35
[1] "tbl2"
                 cls
clus              [,1] [,2]
  STK19 MUTATED      4    1
  STK19 WILD-TYPE   32   35
        clus
vv       STK19 MUTATED STK19 WILD-TYPE
  FEMALE             4              32
  MALE               1              35
                 vv
clus              PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  STK19 MUTATED                                     5
  STK19 WILD-TYPE                                  60
                 vv
clus              PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  STK19 MUTATED                                       0
  STK19 WILD-TYPE                                     4
                 vv
clus              PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  STK19 MUTATED                                                  0
  STK19 WILD-TYPE                                                2
D143V8, multiclass
                                                  clus
vv                                                 STK19 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                          5
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                        0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA             0
                                                  clus
vv                                                 STK19 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                           60
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                          4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA               2
D143V9, continuous
[1] "Remove cluster labels:" "STK19 MUTATED"         
clus
  STK19 MUTATED STK19 WILD-TYPE 
              1              21 
     TCGA-F2-6880      TCGA-FB-A4P5      TCGA-FB-A4P6      TCGA-FB-A5VM 
"STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" 
     TCGA-FB-A78T      TCGA-FB-A7DR      TCGA-H6-8124      TCGA-H6-A45N 
"STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" 
     TCGA-H8-A6C1      TCGA-IB-7644      TCGA-IB-7649      TCGA-IB-7651 
"STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" 
     TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887      TCGA-IB-7891 
"STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" 
     TCGA-IB-8126      TCGA-IB-A5SS      TCGA-IB-A6UG      TCGA-LB-A7SX 
"STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" 
     TCGA-OE-A75W 
"STK19 WILD-TYPE" 
D143V10, continuous
[1] "Remove cluster labels:" "STK19 MUTATED"         
clus
  STK19 MUTATED STK19 WILD-TYPE 
              1              18 
     TCGA-FB-A4P5      TCGA-FB-A4P6      TCGA-FB-A5VM      TCGA-FB-A78T 
"STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" 
     TCGA-FB-A7DR      TCGA-H6-8124      TCGA-H8-A6C1      TCGA-IB-7644 
"STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" 
     TCGA-IB-7649      TCGA-IB-7651      TCGA-IB-7885      TCGA-IB-7886 
"STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" 
     TCGA-IB-7891      TCGA-IB-8126      TCGA-IB-A5SS      TCGA-IB-A6UG 
"STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" "STK19 WILD-TYPE" 
     TCGA-LB-A7SX      TCGA-OE-A75W 
"STK19 WILD-TYPE" "STK19 WILD-TYPE" 
                 vv
clus              R0 R1 RX
  STK19 MUTATED    2  3  0
  STK19 WILD-TYPE 40 21  2
D143V11, multiclass
    clus
vv   STK19 MUTATED STK19 WILD-TYPE
  R0             2              40
  R1             3              21
  RX             0               2
D143V12, continuous

Clustering(144) Variable = PANK2 MUTATION ANALYSIS
D144V1, survival
                 sevent
clus2              0  1
  PANK2 MUTATED    4  4
  PANK2 WILD-TYPE 36 25
  PANK2 MUTATED PANK2 WILD-TYPE 
              8              61 
  PANK2 MUTATED PANK2 WILD-TYPE 
              4              25 
$`PANK2 MUTATED`
TCGA-F2-A44H TCGA-H6-A45N TCGA-HZ-7923 TCGA-HZ-8636 TCGA-IB-7646 TCGA-IB-7651 
       19.27         7.66         0.26         0.16         4.77        19.82 
TCGA-IB-7887 TCGA-IB-8126 
        3.62         0.56 

$`PANK2 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-FB-A4P5 
       10.98         9.70        11.84         7.10         5.03         0.13 
TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR TCGA-FZ-5920 
       11.93        12.66         2.47         0.03         5.46         2.01 
TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 TCGA-H8-A6C1 TCGA-HZ-7289 TCGA-HZ-7918 
       36.20        20.81        12.89        13.02         7.89         0.92 
TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8001 
        0.66         0.13        12.13        11.87         0.26         0.62 
TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8638 
        0.79         0.69         3.95         0.92         0.53         2.99 
TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7645 
        0.76         0.95         6.38         1.51        11.41        49.38 
TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7888 
       21.90        15.35        15.65        27.98         4.04        43.79 
TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-8127 
       15.81        19.66        16.04         3.85        15.98        17.16 
TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG 
       10.82         9.86         7.20        15.12         0.26         1.35 
TCGA-LB-A7SX TCGA-OE-A75W TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E 
        4.18         3.62         8.12        13.68        16.80        14.14 
TCGA-US-A77J 
       18.67 

  PANK2 MUTATED PANK2 WILD-TYPE 
           0.16            0.03 
  PANK2 MUTATED PANK2 WILD-TYPE 
          19.82           49.38 
  PANK2 MUTATED PANK2 WILD-TYPE 
          4.195           8.120 
[1] "0.2 - 19.8 (4.2)" "0.0 - 49.4 (8.1)"
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"PANK2 WILD-TYPE" "PANK2 WILD-TYPE" "PANK2 WILD-TYPE" "PANK2 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"PANK2 WILD-TYPE"   "PANK2 MUTATED" "PANK2 WILD-TYPE" "PANK2 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"PANK2 WILD-TYPE" "PANK2 WILD-TYPE" "PANK2 WILD-TYPE" "PANK2 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"PANK2 WILD-TYPE" "PANK2 WILD-TYPE" "PANK2 WILD-TYPE" "PANK2 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
  "PANK2 MUTATED" "PANK2 WILD-TYPE" "PANK2 WILD-TYPE" "PANK2 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"PANK2 WILD-TYPE" "PANK2 WILD-TYPE"   "PANK2 MUTATED" "PANK2 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"PANK2 WILD-TYPE" "PANK2 WILD-TYPE" "PANK2 WILD-TYPE" "PANK2 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"PANK2 WILD-TYPE" "PANK2 WILD-TYPE" "PANK2 WILD-TYPE" "PANK2 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
  "PANK2 MUTATED" "PANK2 WILD-TYPE" "PANK2 WILD-TYPE" "PANK2 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"PANK2 WILD-TYPE" "PANK2 WILD-TYPE" "PANK2 WILD-TYPE" "PANK2 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
  "PANK2 MUTATED" "PANK2 WILD-TYPE" "PANK2 WILD-TYPE"   "PANK2 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"PANK2 WILD-TYPE" "PANK2 WILD-TYPE" "PANK2 WILD-TYPE"   "PANK2 MUTATED" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"PANK2 WILD-TYPE" "PANK2 WILD-TYPE" "PANK2 WILD-TYPE" "PANK2 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"PANK2 WILD-TYPE" "PANK2 WILD-TYPE"   "PANK2 MUTATED" "PANK2 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"PANK2 WILD-TYPE" "PANK2 WILD-TYPE" "PANK2 WILD-TYPE" "PANK2 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"PANK2 WILD-TYPE" "PANK2 WILD-TYPE" "PANK2 WILD-TYPE" "PANK2 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"PANK2 WILD-TYPE" "PANK2 WILD-TYPE" "PANK2 WILD-TYPE" "PANK2 WILD-TYPE" 
     TCGA-US-A77J 
"PANK2 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"PANK2 WILD-TYPE" "PANK2 WILD-TYPE" "PANK2 WILD-TYPE" "PANK2 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"PANK2 WILD-TYPE"   "PANK2 MUTATED" "PANK2 WILD-TYPE" "PANK2 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"PANK2 WILD-TYPE" "PANK2 WILD-TYPE" "PANK2 WILD-TYPE" "PANK2 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"PANK2 WILD-TYPE" "PANK2 WILD-TYPE" "PANK2 WILD-TYPE" "PANK2 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
  "PANK2 MUTATED" "PANK2 WILD-TYPE" "PANK2 WILD-TYPE" "PANK2 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"PANK2 WILD-TYPE" "PANK2 WILD-TYPE"   "PANK2 MUTATED" "PANK2 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"PANK2 WILD-TYPE" "PANK2 WILD-TYPE" "PANK2 WILD-TYPE" "PANK2 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"PANK2 WILD-TYPE" "PANK2 WILD-TYPE" "PANK2 WILD-TYPE" "PANK2 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
  "PANK2 MUTATED" "PANK2 WILD-TYPE" "PANK2 WILD-TYPE" "PANK2 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"PANK2 WILD-TYPE" "PANK2 WILD-TYPE" "PANK2 WILD-TYPE" "PANK2 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
  "PANK2 MUTATED" "PANK2 WILD-TYPE" "PANK2 WILD-TYPE"   "PANK2 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"PANK2 WILD-TYPE" "PANK2 WILD-TYPE" "PANK2 WILD-TYPE"   "PANK2 MUTATED" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"PANK2 WILD-TYPE" "PANK2 WILD-TYPE" "PANK2 WILD-TYPE" "PANK2 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"PANK2 WILD-TYPE" "PANK2 WILD-TYPE"   "PANK2 MUTATED" "PANK2 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"PANK2 WILD-TYPE" "PANK2 WILD-TYPE" "PANK2 WILD-TYPE" "PANK2 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"PANK2 WILD-TYPE" "PANK2 WILD-TYPE" "PANK2 WILD-TYPE" "PANK2 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"PANK2 WILD-TYPE" "PANK2 WILD-TYPE" "PANK2 WILD-TYPE" "PANK2 WILD-TYPE" 
     TCGA-US-A77J 
"PANK2 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"PANK2 WILD-TYPE" "PANK2 WILD-TYPE" "PANK2 WILD-TYPE" "PANK2 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"PANK2 WILD-TYPE"   "PANK2 MUTATED" "PANK2 WILD-TYPE" "PANK2 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"PANK2 WILD-TYPE" "PANK2 WILD-TYPE" "PANK2 WILD-TYPE" "PANK2 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"PANK2 WILD-TYPE" "PANK2 WILD-TYPE" "PANK2 WILD-TYPE" "PANK2 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
  "PANK2 MUTATED" "PANK2 WILD-TYPE" "PANK2 WILD-TYPE" "PANK2 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"PANK2 WILD-TYPE" "PANK2 WILD-TYPE"   "PANK2 MUTATED" "PANK2 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"PANK2 WILD-TYPE" "PANK2 WILD-TYPE" "PANK2 WILD-TYPE" "PANK2 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"PANK2 WILD-TYPE" "PANK2 WILD-TYPE" "PANK2 WILD-TYPE" "PANK2 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
  "PANK2 MUTATED" "PANK2 WILD-TYPE" "PANK2 WILD-TYPE" "PANK2 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"PANK2 WILD-TYPE" "PANK2 WILD-TYPE" "PANK2 WILD-TYPE" "PANK2 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
  "PANK2 MUTATED" "PANK2 WILD-TYPE" "PANK2 WILD-TYPE"   "PANK2 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"PANK2 WILD-TYPE" "PANK2 WILD-TYPE" "PANK2 WILD-TYPE"   "PANK2 MUTATED" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"PANK2 WILD-TYPE" "PANK2 WILD-TYPE" "PANK2 WILD-TYPE" "PANK2 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"PANK2 WILD-TYPE" "PANK2 WILD-TYPE"   "PANK2 MUTATED" "PANK2 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"PANK2 WILD-TYPE" "PANK2 WILD-TYPE" "PANK2 WILD-TYPE" "PANK2 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"PANK2 WILD-TYPE" "PANK2 WILD-TYPE" "PANK2 WILD-TYPE" "PANK2 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"PANK2 WILD-TYPE" "PANK2 WILD-TYPE" "PANK2 WILD-TYPE" "PANK2 WILD-TYPE" 
     TCGA-US-A77J 
"PANK2 WILD-TYPE" 
[1] "hr=" "1.7"
D144V2, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  PANK2 MUTATED          0        0         2         4         1        1
  PANK2 WILD-TYPE        1        4         9        47         1        2
D144V3, multiclass
                 vv
clus              T1+T2 T3+T4
  PANK2 MUTATED       0     8
  PANK2 WILD-TYPE     6    58
D144V4, multiclass
       clus
vv      PANK2 MUTATED PANK2 WILD-TYPE
  T1+T2             0               6
  T3+T4             8              58
D144V5, binary
                 cls
clus               0  1
  PANK2 MUTATED    3  5
  PANK2 WILD-TYPE 14 49
[1] "tbl2"
                 cls
clus              [,1] [,2]
  PANK2 MUTATED      3    5
  PANK2 WILD-TYPE   14   49
   clus
vv  PANK2 MUTATED PANK2 WILD-TYPE
  0             3              14
  1             5              49
                 vv
clus              M0 M1 MX
  PANK2 MUTATED    5  1  2
  PANK2 WILD-TYPE 34  2 28
D144V6, multiclass
    clus
vv   PANK2 MUTATED PANK2 WILD-TYPE
  M0             5              34
  M1             1               2
  MX             2              28
D144V7, binary
                 cls
clus               0  1
  PANK2 MUTATED    5  3
  PANK2 WILD-TYPE 31 33
[1] "tbl2"
                 cls
clus              [,1] [,2]
  PANK2 MUTATED      5    3
  PANK2 WILD-TYPE   31   33
        clus
vv       PANK2 MUTATED PANK2 WILD-TYPE
  FEMALE             5              31
  MALE               3              33
                 vv
clus              PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  PANK2 MUTATED                                     7
  PANK2 WILD-TYPE                                  58
                 vv
clus              PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  PANK2 MUTATED                                       1
  PANK2 WILD-TYPE                                     3
                 vv
clus              PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  PANK2 MUTATED                                                  0
  PANK2 WILD-TYPE                                                2
D144V8, multiclass
                                                  clus
vv                                                 PANK2 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                          7
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                        1
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA             0
                                                  clus
vv                                                 PANK2 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                           58
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                          3
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA               2
D144V9, continuous
D144V10, continuous
[1] "Remove cluster labels:" "PANK2 MUTATED"         
clus
  PANK2 MUTATED PANK2 WILD-TYPE 
              2              17 
     TCGA-FB-A4P5      TCGA-FB-A4P6      TCGA-FB-A5VM      TCGA-FB-A78T 
"PANK2 WILD-TYPE" "PANK2 WILD-TYPE" "PANK2 WILD-TYPE" "PANK2 WILD-TYPE" 
     TCGA-FB-A7DR      TCGA-H6-8124      TCGA-H8-A6C1      TCGA-IB-7644 
"PANK2 WILD-TYPE" "PANK2 WILD-TYPE" "PANK2 WILD-TYPE" "PANK2 WILD-TYPE" 
     TCGA-IB-7649      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7891 
"PANK2 WILD-TYPE" "PANK2 WILD-TYPE" "PANK2 WILD-TYPE" "PANK2 WILD-TYPE" 
     TCGA-IB-8127      TCGA-IB-A5SS      TCGA-IB-A6UG      TCGA-LB-A7SX 
"PANK2 WILD-TYPE" "PANK2 WILD-TYPE" "PANK2 WILD-TYPE" "PANK2 WILD-TYPE" 
     TCGA-OE-A75W 
"PANK2 WILD-TYPE" 
                 vv
clus              R0 R1 RX
  PANK2 MUTATED    3  4  0
  PANK2 WILD-TYPE 39 20  2
D144V11, multiclass
    clus
vv   PANK2 MUTATED PANK2 WILD-TYPE
  R0             3              39
  R1             4              20
  RX             0               2
D144V12, continuous

Clustering(145) Variable = ST6GALNAC5 MUTATION ANALYSIS
D145V1, survival
                      sevent
clus2                   0  1
  ST6GALNAC5 MUTATED    8  4
  ST6GALNAC5 WILD-TYPE 32 25
  ST6GALNAC5 MUTATED ST6GALNAC5 WILD-TYPE 
                  12                   57 
  ST6GALNAC5 MUTATED ST6GALNAC5 WILD-TYPE 
                   4                   25 
$`ST6GALNAC5 MUTATED`
TCGA-FB-A545 TCGA-H6-A45N TCGA-HZ-7919 TCGA-HZ-7923 TCGA-HZ-7925 TCGA-HZ-8002 
       12.66         7.66         0.66         0.26        11.87         0.79 
TCGA-HZ-8003 TCGA-HZ-A49G TCGA-IB-7651 TCGA-IB-7887 TCGA-IB-7897 TCGA-IB-A5ST 
        0.69         0.76        19.82         3.62        15.98         0.26 

$`ST6GALNAC5 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P5 TCGA-FB-A4P6 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR TCGA-FZ-5920 
        0.13        11.93         2.47         0.03         5.46         2.01 
TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 TCGA-H8-A6C1 TCGA-HZ-7289 TCGA-HZ-7918 
       36.20        20.81        12.89        13.02         7.89         0.92 
TCGA-HZ-7922 TCGA-HZ-7924 TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8005 TCGA-HZ-8315 
        0.13        12.13         0.26         0.62         3.95         0.92 
TCGA-HZ-8317 TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK 
        0.53         0.16         2.99         0.95         6.38         1.51 
TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7652 
       11.41        49.38         4.77        21.90        15.35        15.65 
TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 
       27.98         4.04        43.79        15.81        19.66        16.04 
TCGA-IB-7893 TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ 
        3.85         0.56        17.16        10.82         9.86         7.20 
TCGA-IB-A5SS TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W TCGA-PZ-A5RE TCGA-Q3-A5QY 
       15.12         1.35         4.18         3.62         8.12        13.68 
TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
       16.80        14.14        18.67 

  ST6GALNAC5 MUTATED ST6GALNAC5 WILD-TYPE 
                0.26                 0.03 
  ST6GALNAC5 MUTATED ST6GALNAC5 WILD-TYPE 
               19.82                49.38 
  ST6GALNAC5 MUTATED ST6GALNAC5 WILD-TYPE 
               2.205                8.120 
[1] "0.3 - 19.8 (2.2)" "0.0 - 49.4 (8.1)"
          TCGA-F2-6879           TCGA-F2-6880           TCGA-F2-7273 
"ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" 
          TCGA-F2-7276           TCGA-F2-A44G           TCGA-F2-A44H 
"ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" 
          TCGA-FB-A4P5           TCGA-FB-A4P6           TCGA-FB-A545 
"ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE"   "ST6GALNAC5 MUTATED" 
          TCGA-FB-A5VM           TCGA-FB-A78T           TCGA-FB-A7DR 
"ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" 
          TCGA-FZ-5920           TCGA-FZ-5922           TCGA-FZ-5923 
"ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" 
          TCGA-H6-8124           TCGA-H6-A45N           TCGA-H8-A6C1 
"ST6GALNAC5 WILD-TYPE"   "ST6GALNAC5 MUTATED" "ST6GALNAC5 WILD-TYPE" 
          TCGA-HZ-7289           TCGA-HZ-7918           TCGA-HZ-7919 
"ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE"   "ST6GALNAC5 MUTATED" 
          TCGA-HZ-7922           TCGA-HZ-7923           TCGA-HZ-7924 
"ST6GALNAC5 WILD-TYPE"   "ST6GALNAC5 MUTATED" "ST6GALNAC5 WILD-TYPE" 
          TCGA-HZ-7925           TCGA-HZ-7926           TCGA-HZ-8001 
  "ST6GALNAC5 MUTATED" "ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" 
          TCGA-HZ-8002           TCGA-HZ-8003           TCGA-HZ-8005 
  "ST6GALNAC5 MUTATED"   "ST6GALNAC5 MUTATED" "ST6GALNAC5 WILD-TYPE" 
          TCGA-HZ-8315           TCGA-HZ-8317           TCGA-HZ-8636 
"ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" 
          TCGA-HZ-8638           TCGA-HZ-A49G           TCGA-HZ-A49H 
"ST6GALNAC5 WILD-TYPE"   "ST6GALNAC5 MUTATED" "ST6GALNAC5 WILD-TYPE" 
          TCGA-HZ-A4BH           TCGA-HZ-A4BK           TCGA-IB-7644 
"ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" 
          TCGA-IB-7645           TCGA-IB-7646           TCGA-IB-7647 
"ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" 
          TCGA-IB-7649           TCGA-IB-7651           TCGA-IB-7652 
"ST6GALNAC5 WILD-TYPE"   "ST6GALNAC5 MUTATED" "ST6GALNAC5 WILD-TYPE" 
          TCGA-IB-7885           TCGA-IB-7886           TCGA-IB-7887 
"ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE"   "ST6GALNAC5 MUTATED" 
          TCGA-IB-7888           TCGA-IB-7889           TCGA-IB-7890 
"ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" 
          TCGA-IB-7891           TCGA-IB-7893           TCGA-IB-7897 
"ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE"   "ST6GALNAC5 MUTATED" 
          TCGA-IB-8126           TCGA-IB-8127           TCGA-IB-A5SO 
"ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" 
          TCGA-IB-A5SP           TCGA-IB-A5SQ           TCGA-IB-A5SS 
"ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" 
          TCGA-IB-A5ST           TCGA-IB-A6UG           TCGA-LB-A7SX 
  "ST6GALNAC5 MUTATED" "ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" 
          TCGA-OE-A75W           TCGA-PZ-A5RE           TCGA-Q3-A5QY 
"ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" 
          TCGA-US-A779           TCGA-US-A77E           TCGA-US-A77J 
"ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" 
          TCGA-F2-6879           TCGA-F2-6880           TCGA-F2-7273 
"ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" 
          TCGA-F2-7276           TCGA-F2-A44G           TCGA-F2-A44H 
"ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" 
          TCGA-FB-A4P5           TCGA-FB-A4P6           TCGA-FB-A545 
"ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE"   "ST6GALNAC5 MUTATED" 
          TCGA-FB-A5VM           TCGA-FB-A78T           TCGA-FB-A7DR 
"ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" 
          TCGA-FZ-5920           TCGA-FZ-5922           TCGA-FZ-5923 
"ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" 
          TCGA-H6-8124           TCGA-H6-A45N           TCGA-H8-A6C1 
"ST6GALNAC5 WILD-TYPE"   "ST6GALNAC5 MUTATED" "ST6GALNAC5 WILD-TYPE" 
          TCGA-HZ-7289           TCGA-HZ-7918           TCGA-HZ-7919 
"ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE"   "ST6GALNAC5 MUTATED" 
          TCGA-HZ-7922           TCGA-HZ-7923           TCGA-HZ-7924 
"ST6GALNAC5 WILD-TYPE"   "ST6GALNAC5 MUTATED" "ST6GALNAC5 WILD-TYPE" 
          TCGA-HZ-7925           TCGA-HZ-7926           TCGA-HZ-8001 
  "ST6GALNAC5 MUTATED" "ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" 
          TCGA-HZ-8002           TCGA-HZ-8003           TCGA-HZ-8005 
  "ST6GALNAC5 MUTATED"   "ST6GALNAC5 MUTATED" "ST6GALNAC5 WILD-TYPE" 
          TCGA-HZ-8315           TCGA-HZ-8317           TCGA-HZ-8636 
"ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" 
          TCGA-HZ-8638           TCGA-HZ-A49G           TCGA-HZ-A49H 
"ST6GALNAC5 WILD-TYPE"   "ST6GALNAC5 MUTATED" "ST6GALNAC5 WILD-TYPE" 
          TCGA-HZ-A4BH           TCGA-HZ-A4BK           TCGA-IB-7644 
"ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" 
          TCGA-IB-7645           TCGA-IB-7646           TCGA-IB-7647 
"ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" 
          TCGA-IB-7649           TCGA-IB-7651           TCGA-IB-7652 
"ST6GALNAC5 WILD-TYPE"   "ST6GALNAC5 MUTATED" "ST6GALNAC5 WILD-TYPE" 
          TCGA-IB-7885           TCGA-IB-7886           TCGA-IB-7887 
"ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE"   "ST6GALNAC5 MUTATED" 
          TCGA-IB-7888           TCGA-IB-7889           TCGA-IB-7890 
"ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" 
          TCGA-IB-7891           TCGA-IB-7893           TCGA-IB-7897 
"ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE"   "ST6GALNAC5 MUTATED" 
          TCGA-IB-8126           TCGA-IB-8127           TCGA-IB-A5SO 
"ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" 
          TCGA-IB-A5SP           TCGA-IB-A5SQ           TCGA-IB-A5SS 
"ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" 
          TCGA-IB-A5ST           TCGA-IB-A6UG           TCGA-LB-A7SX 
  "ST6GALNAC5 MUTATED" "ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" 
          TCGA-OE-A75W           TCGA-PZ-A5RE           TCGA-Q3-A5QY 
"ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" 
          TCGA-US-A779           TCGA-US-A77E           TCGA-US-A77J 
"ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" 
          TCGA-F2-6879           TCGA-F2-6880           TCGA-F2-7273 
"ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" 
          TCGA-F2-7276           TCGA-F2-A44G           TCGA-F2-A44H 
"ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" 
          TCGA-FB-A4P5           TCGA-FB-A4P6           TCGA-FB-A545 
"ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE"   "ST6GALNAC5 MUTATED" 
          TCGA-FB-A5VM           TCGA-FB-A78T           TCGA-FB-A7DR 
"ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" 
          TCGA-FZ-5920           TCGA-FZ-5922           TCGA-FZ-5923 
"ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" 
          TCGA-H6-8124           TCGA-H6-A45N           TCGA-H8-A6C1 
"ST6GALNAC5 WILD-TYPE"   "ST6GALNAC5 MUTATED" "ST6GALNAC5 WILD-TYPE" 
          TCGA-HZ-7289           TCGA-HZ-7918           TCGA-HZ-7919 
"ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE"   "ST6GALNAC5 MUTATED" 
          TCGA-HZ-7922           TCGA-HZ-7923           TCGA-HZ-7924 
"ST6GALNAC5 WILD-TYPE"   "ST6GALNAC5 MUTATED" "ST6GALNAC5 WILD-TYPE" 
          TCGA-HZ-7925           TCGA-HZ-7926           TCGA-HZ-8001 
  "ST6GALNAC5 MUTATED" "ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" 
          TCGA-HZ-8002           TCGA-HZ-8003           TCGA-HZ-8005 
  "ST6GALNAC5 MUTATED"   "ST6GALNAC5 MUTATED" "ST6GALNAC5 WILD-TYPE" 
          TCGA-HZ-8315           TCGA-HZ-8317           TCGA-HZ-8636 
"ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" 
          TCGA-HZ-8638           TCGA-HZ-A49G           TCGA-HZ-A49H 
"ST6GALNAC5 WILD-TYPE"   "ST6GALNAC5 MUTATED" "ST6GALNAC5 WILD-TYPE" 
          TCGA-HZ-A4BH           TCGA-HZ-A4BK           TCGA-IB-7644 
"ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" 
          TCGA-IB-7645           TCGA-IB-7646           TCGA-IB-7647 
"ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" 
          TCGA-IB-7649           TCGA-IB-7651           TCGA-IB-7652 
"ST6GALNAC5 WILD-TYPE"   "ST6GALNAC5 MUTATED" "ST6GALNAC5 WILD-TYPE" 
          TCGA-IB-7885           TCGA-IB-7886           TCGA-IB-7887 
"ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE"   "ST6GALNAC5 MUTATED" 
          TCGA-IB-7888           TCGA-IB-7889           TCGA-IB-7890 
"ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" 
          TCGA-IB-7891           TCGA-IB-7893           TCGA-IB-7897 
"ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE"   "ST6GALNAC5 MUTATED" 
          TCGA-IB-8126           TCGA-IB-8127           TCGA-IB-A5SO 
"ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" 
          TCGA-IB-A5SP           TCGA-IB-A5SQ           TCGA-IB-A5SS 
"ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" 
          TCGA-IB-A5ST           TCGA-IB-A6UG           TCGA-LB-A7SX 
  "ST6GALNAC5 MUTATED" "ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" 
          TCGA-OE-A75W           TCGA-PZ-A5RE           TCGA-Q3-A5QY 
"ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" 
          TCGA-US-A779           TCGA-US-A77E           TCGA-US-A77J 
"ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" 
[1] "hr=" "1.4"
D145V2, continuous
                      vv
clus                   STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  ST6GALNAC5 MUTATED          0        0         1        11         0        0
  ST6GALNAC5 WILD-TYPE        1        4        10        40         2        3
D145V3, multiclass
                      vv
clus                   T1+T2 T3+T4
  ST6GALNAC5 MUTATED       1    11
  ST6GALNAC5 WILD-TYPE     5    55
D145V4, multiclass
       clus
vv      ST6GALNAC5 MUTATED ST6GALNAC5 WILD-TYPE
  T1+T2                  1                    5
  T3+T4                 11                   55
D145V5, binary
                      cls
clus                    0  1
  ST6GALNAC5 MUTATED    1 11
  ST6GALNAC5 WILD-TYPE 16 43
[1] "tbl2"
                      cls
clus                   [,1] [,2]
  ST6GALNAC5 MUTATED      1   11
  ST6GALNAC5 WILD-TYPE   16   43
   clus
vv  ST6GALNAC5 MUTATED ST6GALNAC5 WILD-TYPE
  0                  1                   16
  1                 11                   43
                      vv
clus                   M0 M1 MX
  ST6GALNAC5 MUTATED    6  0  6
  ST6GALNAC5 WILD-TYPE 33  3 24
D145V6, multiclass
    clus
vv   ST6GALNAC5 MUTATED ST6GALNAC5 WILD-TYPE
  M0                  6                   33
  M1                  0                    3
  MX                  6                   24
D145V7, binary
                      cls
clus                    0  1
  ST6GALNAC5 MUTATED    9  3
  ST6GALNAC5 WILD-TYPE 27 33
[1] "tbl2"
                      cls
clus                   [,1] [,2]
  ST6GALNAC5 MUTATED      9    3
  ST6GALNAC5 WILD-TYPE   27   33
        clus
vv       ST6GALNAC5 MUTATED ST6GALNAC5 WILD-TYPE
  FEMALE                  9                   27
  MALE                    3                   33
                      vv
clus                   PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  ST6GALNAC5 MUTATED                                    11
  ST6GALNAC5 WILD-TYPE                                  54
                      vv
clus                   PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  ST6GALNAC5 MUTATED                                       1
  ST6GALNAC5 WILD-TYPE                                     3
                      vv
clus                   PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  ST6GALNAC5 MUTATED                                                  0
  ST6GALNAC5 WILD-TYPE                                                2
D145V8, multiclass
                                                  clus
vv                                                 ST6GALNAC5 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                              11
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                             1
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                  0
                                                  clus
vv                                                 ST6GALNAC5 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                54
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                               3
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                    2
D145V9, continuous
D145V10, continuous
[1] "Remove cluster labels:" "ST6GALNAC5 MUTATED"    
clus
  ST6GALNAC5 MUTATED ST6GALNAC5 WILD-TYPE 
                   1                   18 
          TCGA-FB-A4P5           TCGA-FB-A4P6           TCGA-FB-A5VM 
"ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" 
          TCGA-FB-A78T           TCGA-FB-A7DR           TCGA-H6-8124 
"ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" 
          TCGA-H8-A6C1           TCGA-IB-7644           TCGA-IB-7649 
"ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" 
          TCGA-IB-7885           TCGA-IB-7886           TCGA-IB-7891 
"ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" 
          TCGA-IB-8126           TCGA-IB-8127           TCGA-IB-A5SS 
"ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" 
          TCGA-IB-A6UG           TCGA-LB-A7SX           TCGA-OE-A75W 
"ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" 
                      vv
clus                   R0 R1 RX
  ST6GALNAC5 MUTATED    7  3  0
  ST6GALNAC5 WILD-TYPE 35 21  2
D145V11, multiclass
    clus
vv   ST6GALNAC5 MUTATED ST6GALNAC5 WILD-TYPE
  R0                  7                   35
  R1                  3                   21
  RX                  0                    2
D145V12, continuous

Clustering(146) Variable = PTPLAD2 MUTATION ANALYSIS
D146V1, survival
                   sevent
clus2                0  1
  PTPLAD2 MUTATED    2  3
  PTPLAD2 WILD-TYPE 38 26
  PTPLAD2 MUTATED PTPLAD2 WILD-TYPE 
                5                64 
  PTPLAD2 MUTATED PTPLAD2 WILD-TYPE 
                3                26 
$`PTPLAD2 MUTATED`
TCGA-HZ-8003 TCGA-HZ-A4BH TCGA-IB-7644 TCGA-IB-7651 TCGA-IB-7893 
        0.69         6.38        11.41        19.82         3.85 

$`PTPLAD2 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P5 TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR 
        0.13        11.93        12.66         2.47         0.03         5.46 
TCGA-FZ-5920 TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 
        2.01        36.20        20.81        12.89         7.66        13.02 
TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 
        7.89         0.92         0.66         0.13         0.26        12.13 
TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8005 TCGA-HZ-8315 
       11.87         0.26         0.62         0.79         3.95         0.92 
TCGA-HZ-8317 TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BK 
        0.53         0.16         2.99         0.76         0.95         1.51 
TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7652 TCGA-IB-7885 
       49.38         4.77        21.90        15.35        15.65        27.98 
TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 
        4.04         3.62        43.79        15.81        19.66        16.04 
TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ 
       15.98         0.56        17.16        10.82         9.86         7.20 
TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W TCGA-PZ-A5RE 
       15.12         0.26         1.35         4.18         3.62         8.12 
TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
       13.68        16.80        14.14        18.67 

  PTPLAD2 MUTATED PTPLAD2 WILD-TYPE 
             0.69              0.03 
  PTPLAD2 MUTATED PTPLAD2 WILD-TYPE 
            19.82             49.38 
  PTPLAD2 MUTATED PTPLAD2 WILD-TYPE 
            6.380             7.775 
[1] "0.7 - 19.8 (6.4)" "0.0 - 49.4 (7.8)"
       TCGA-F2-6879        TCGA-F2-6880        TCGA-F2-7273        TCGA-F2-7276 
"PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" 
       TCGA-F2-A44G        TCGA-F2-A44H        TCGA-FB-A4P5        TCGA-FB-A4P6 
"PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" 
       TCGA-FB-A545        TCGA-FB-A5VM        TCGA-FB-A78T        TCGA-FB-A7DR 
"PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" 
       TCGA-FZ-5920        TCGA-FZ-5922        TCGA-FZ-5923        TCGA-H6-8124 
"PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" 
       TCGA-H6-A45N        TCGA-H8-A6C1        TCGA-HZ-7289        TCGA-HZ-7918 
"PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" 
       TCGA-HZ-7919        TCGA-HZ-7922        TCGA-HZ-7923        TCGA-HZ-7924 
"PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" 
       TCGA-HZ-7925        TCGA-HZ-7926        TCGA-HZ-8001        TCGA-HZ-8002 
"PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" 
       TCGA-HZ-8003        TCGA-HZ-8005        TCGA-HZ-8315        TCGA-HZ-8317 
  "PTPLAD2 MUTATED" "PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" 
       TCGA-HZ-8636        TCGA-HZ-8638        TCGA-HZ-A49G        TCGA-HZ-A49H 
"PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" 
       TCGA-HZ-A4BH        TCGA-HZ-A4BK        TCGA-IB-7644        TCGA-IB-7645 
  "PTPLAD2 MUTATED" "PTPLAD2 WILD-TYPE"   "PTPLAD2 MUTATED" "PTPLAD2 WILD-TYPE" 
       TCGA-IB-7646        TCGA-IB-7647        TCGA-IB-7649        TCGA-IB-7651 
"PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE"   "PTPLAD2 MUTATED" 
       TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-7886        TCGA-IB-7887 
"PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" 
       TCGA-IB-7888        TCGA-IB-7889        TCGA-IB-7890        TCGA-IB-7891 
"PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" 
       TCGA-IB-7893        TCGA-IB-7897        TCGA-IB-8126        TCGA-IB-8127 
  "PTPLAD2 MUTATED" "PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" 
       TCGA-IB-A5SO        TCGA-IB-A5SP        TCGA-IB-A5SQ        TCGA-IB-A5SS 
"PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" 
       TCGA-IB-A5ST        TCGA-IB-A6UG        TCGA-LB-A7SX        TCGA-OE-A75W 
"PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" 
       TCGA-PZ-A5RE        TCGA-Q3-A5QY        TCGA-US-A779        TCGA-US-A77E 
"PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" 
       TCGA-US-A77J 
"PTPLAD2 WILD-TYPE" 
       TCGA-F2-6879        TCGA-F2-6880        TCGA-F2-7273        TCGA-F2-7276 
"PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" 
       TCGA-F2-A44G        TCGA-F2-A44H        TCGA-FB-A4P5        TCGA-FB-A4P6 
"PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" 
       TCGA-FB-A545        TCGA-FB-A5VM        TCGA-FB-A78T        TCGA-FB-A7DR 
"PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" 
       TCGA-FZ-5920        TCGA-FZ-5922        TCGA-FZ-5923        TCGA-H6-8124 
"PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" 
       TCGA-H6-A45N        TCGA-H8-A6C1        TCGA-HZ-7289        TCGA-HZ-7918 
"PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" 
       TCGA-HZ-7919        TCGA-HZ-7922        TCGA-HZ-7923        TCGA-HZ-7924 
"PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" 
       TCGA-HZ-7925        TCGA-HZ-7926        TCGA-HZ-8001        TCGA-HZ-8002 
"PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" 
       TCGA-HZ-8003        TCGA-HZ-8005        TCGA-HZ-8315        TCGA-HZ-8317 
  "PTPLAD2 MUTATED" "PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" 
       TCGA-HZ-8636        TCGA-HZ-8638        TCGA-HZ-A49G        TCGA-HZ-A49H 
"PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" 
       TCGA-HZ-A4BH        TCGA-HZ-A4BK        TCGA-IB-7644        TCGA-IB-7645 
  "PTPLAD2 MUTATED" "PTPLAD2 WILD-TYPE"   "PTPLAD2 MUTATED" "PTPLAD2 WILD-TYPE" 
       TCGA-IB-7646        TCGA-IB-7647        TCGA-IB-7649        TCGA-IB-7651 
"PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE"   "PTPLAD2 MUTATED" 
       TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-7886        TCGA-IB-7887 
"PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" 
       TCGA-IB-7888        TCGA-IB-7889        TCGA-IB-7890        TCGA-IB-7891 
"PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" 
       TCGA-IB-7893        TCGA-IB-7897        TCGA-IB-8126        TCGA-IB-8127 
  "PTPLAD2 MUTATED" "PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" 
       TCGA-IB-A5SO        TCGA-IB-A5SP        TCGA-IB-A5SQ        TCGA-IB-A5SS 
"PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" 
       TCGA-IB-A5ST        TCGA-IB-A6UG        TCGA-LB-A7SX        TCGA-OE-A75W 
"PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" 
       TCGA-PZ-A5RE        TCGA-Q3-A5QY        TCGA-US-A779        TCGA-US-A77E 
"PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" 
       TCGA-US-A77J 
"PTPLAD2 WILD-TYPE" 
       TCGA-F2-6879        TCGA-F2-6880        TCGA-F2-7273        TCGA-F2-7276 
"PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" 
       TCGA-F2-A44G        TCGA-F2-A44H        TCGA-FB-A4P5        TCGA-FB-A4P6 
"PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" 
       TCGA-FB-A545        TCGA-FB-A5VM        TCGA-FB-A78T        TCGA-FB-A7DR 
"PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" 
       TCGA-FZ-5920        TCGA-FZ-5922        TCGA-FZ-5923        TCGA-H6-8124 
"PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" 
       TCGA-H6-A45N        TCGA-H8-A6C1        TCGA-HZ-7289        TCGA-HZ-7918 
"PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" 
       TCGA-HZ-7919        TCGA-HZ-7922        TCGA-HZ-7923        TCGA-HZ-7924 
"PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" 
       TCGA-HZ-7925        TCGA-HZ-7926        TCGA-HZ-8001        TCGA-HZ-8002 
"PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" 
       TCGA-HZ-8003        TCGA-HZ-8005        TCGA-HZ-8315        TCGA-HZ-8317 
  "PTPLAD2 MUTATED" "PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" 
       TCGA-HZ-8636        TCGA-HZ-8638        TCGA-HZ-A49G        TCGA-HZ-A49H 
"PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" 
       TCGA-HZ-A4BH        TCGA-HZ-A4BK        TCGA-IB-7644        TCGA-IB-7645 
  "PTPLAD2 MUTATED" "PTPLAD2 WILD-TYPE"   "PTPLAD2 MUTATED" "PTPLAD2 WILD-TYPE" 
       TCGA-IB-7646        TCGA-IB-7647        TCGA-IB-7649        TCGA-IB-7651 
"PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE"   "PTPLAD2 MUTATED" 
       TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-7886        TCGA-IB-7887 
"PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" 
       TCGA-IB-7888        TCGA-IB-7889        TCGA-IB-7890        TCGA-IB-7891 
"PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" 
       TCGA-IB-7893        TCGA-IB-7897        TCGA-IB-8126        TCGA-IB-8127 
  "PTPLAD2 MUTATED" "PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" 
       TCGA-IB-A5SO        TCGA-IB-A5SP        TCGA-IB-A5SQ        TCGA-IB-A5SS 
"PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" 
       TCGA-IB-A5ST        TCGA-IB-A6UG        TCGA-LB-A7SX        TCGA-OE-A75W 
"PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" 
       TCGA-PZ-A5RE        TCGA-Q3-A5QY        TCGA-US-A779        TCGA-US-A77E 
"PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" 
       TCGA-US-A77J 
"PTPLAD2 WILD-TYPE" 
[1] "hr=" "1.8"
D146V2, continuous
                   vv
clus                STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  PTPLAD2 MUTATED          0        0         1         3         0        1
  PTPLAD2 WILD-TYPE        1        4        10        48         2        2
D146V3, multiclass
                   vv
clus                T1+T2 T3+T4
  PTPLAD2 MUTATED       0     5
  PTPLAD2 WILD-TYPE     6    61
D146V4, multiclass
       clus
vv      PTPLAD2 MUTATED PTPLAD2 WILD-TYPE
  T1+T2               0                 6
  T3+T4               5                61
D146V5, binary
                   cls
clus                 0  1
  PTPLAD2 MUTATED    1  4
  PTPLAD2 WILD-TYPE 16 50
[1] "tbl2"
                   cls
clus                [,1] [,2]
  PTPLAD2 MUTATED      1    4
  PTPLAD2 WILD-TYPE   16   50
   clus
vv  PTPLAD2 MUTATED PTPLAD2 WILD-TYPE
  0               1                16
  1               4                50
                   vv
clus                M0 M1 MX
  PTPLAD2 MUTATED    2  1  2
  PTPLAD2 WILD-TYPE 37  2 28
D146V6, multiclass
    clus
vv   PTPLAD2 MUTATED PTPLAD2 WILD-TYPE
  M0               2                37
  M1               1                 2
  MX               2                28
D146V7, binary
                   cls
clus                 0  1
  PTPLAD2 MUTATED    3  2
  PTPLAD2 WILD-TYPE 33 34
[1] "tbl2"
                   cls
clus                [,1] [,2]
  PTPLAD2 MUTATED      3    2
  PTPLAD2 WILD-TYPE   33   34
        clus
vv       PTPLAD2 MUTATED PTPLAD2 WILD-TYPE
  FEMALE               3                33
  MALE                 2                34
                   vv
clus                PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  PTPLAD2 MUTATED                                     5
  PTPLAD2 WILD-TYPE                                  60
                   vv
clus                PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  PTPLAD2 MUTATED                                       0
  PTPLAD2 WILD-TYPE                                     4
                   vv
clus                PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  PTPLAD2 MUTATED                                                  0
  PTPLAD2 WILD-TYPE                                                2
D146V8, multiclass
                                                  clus
vv                                                 PTPLAD2 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                            5
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                          0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA               0
                                                  clus
vv                                                 PTPLAD2 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                             60
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                            4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                 2
D146V9, continuous
[1] "Remove cluster labels:" "PTPLAD2 MUTATED"       
clus
  PTPLAD2 MUTATED PTPLAD2 WILD-TYPE 
                2                20 
       TCGA-F2-6880        TCGA-FB-A4P5        TCGA-FB-A4P6        TCGA-FB-A5VM 
"PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" 
       TCGA-FB-A78T        TCGA-FB-A7DR        TCGA-H6-8124        TCGA-H6-A45N 
"PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" 
       TCGA-H8-A6C1        TCGA-IB-7649        TCGA-IB-7885        TCGA-IB-7886 
"PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" 
       TCGA-IB-7887        TCGA-IB-7891        TCGA-IB-8126        TCGA-IB-8127 
"PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" 
       TCGA-IB-A5SS        TCGA-IB-A6UG        TCGA-LB-A7SX        TCGA-OE-A75W 
"PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" 
D146V10, continuous
[1] "Remove cluster labels:" "PTPLAD2 MUTATED"       
clus
  PTPLAD2 MUTATED PTPLAD2 WILD-TYPE 
                2                17 
       TCGA-FB-A4P5        TCGA-FB-A4P6        TCGA-FB-A5VM        TCGA-FB-A78T 
"PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" 
       TCGA-FB-A7DR        TCGA-H6-8124        TCGA-H8-A6C1        TCGA-IB-7649 
"PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" 
       TCGA-IB-7885        TCGA-IB-7886        TCGA-IB-7891        TCGA-IB-8126 
"PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" 
       TCGA-IB-8127        TCGA-IB-A5SS        TCGA-IB-A6UG        TCGA-LB-A7SX 
"PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" "PTPLAD2 WILD-TYPE" 
       TCGA-OE-A75W 
"PTPLAD2 WILD-TYPE" 
                   vv
clus                R0 R1 RX
  PTPLAD2 MUTATED    3  2  0
  PTPLAD2 WILD-TYPE 39 22  2
D146V11, multiclass
    clus
vv   PTPLAD2 MUTATED PTPLAD2 WILD-TYPE
  R0               3                39
  R1               2                22
  RX               0                 2
D146V12, continuous

Clustering(147) Variable = TNFSF9 MUTATION ANALYSIS
D147V1, survival
                  sevent
clus2               0  1
  TNFSF9 MUTATED   13  4
  TNFSF9 WILD-TYPE 27 25
  TNFSF9 MUTATED TNFSF9 WILD-TYPE 
              17               52 
  TNFSF9 MUTATED TNFSF9 WILD-TYPE 
               4               25 
$`TNFSF9 MUTATED`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-FB-A545 TCGA-HZ-7289 
       10.98         9.70        11.84         7.10        12.66         7.89 
TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8317 TCGA-HZ-A49G 
        0.26        12.13        11.87         0.26         0.53         0.76 
TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7651 TCGA-LB-A7SX 
        0.95         6.38         1.51        19.82         4.18 

$`TNFSF9 WILD-TYPE`
TCGA-F2-A44G TCGA-F2-A44H TCGA-FB-A4P5 TCGA-FB-A4P6 TCGA-FB-A5VM TCGA-FB-A78T 
        5.03        19.27         0.13        11.93         2.47         0.03 
TCGA-FB-A7DR TCGA-FZ-5920 TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N 
        5.46         2.01        36.20        20.81        12.89         7.66 
TCGA-H8-A6C1 TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-8001 TCGA-HZ-8002 
       13.02         0.92         0.66         0.13         0.62         0.79 
TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8636 TCGA-HZ-8638 TCGA-IB-7644 
        0.69         3.95         0.92         0.16         2.99        11.41 
TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7652 TCGA-IB-7885 
       49.38         4.77        21.90        15.35        15.65        27.98 
TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 
        4.04         3.62        43.79        15.81        19.66        16.04 
TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP 
        3.85        15.98         0.56        17.16        10.82         9.86 
TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-OE-A75W TCGA-PZ-A5RE 
        7.20        15.12         0.26         1.35         3.62         8.12 
TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
       13.68        16.80        14.14        18.67 

  TNFSF9 MUTATED TNFSF9 WILD-TYPE 
            0.26             0.03 
  TNFSF9 MUTATED TNFSF9 WILD-TYPE 
           19.82            49.38 
  TNFSF9 MUTATED TNFSF9 WILD-TYPE 
            7.10             7.89 
[1] "0.3 - 19.8 (7.1)" "0.0 - 49.4 (7.9)"
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
  "TNFSF9 MUTATED"   "TNFSF9 MUTATED"   "TNFSF9 MUTATED"   "TNFSF9 MUTATED" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"TNFSF9 WILD-TYPE" "TNFSF9 WILD-TYPE" "TNFSF9 WILD-TYPE" "TNFSF9 WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
  "TNFSF9 MUTATED" "TNFSF9 WILD-TYPE" "TNFSF9 WILD-TYPE" "TNFSF9 WILD-TYPE" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"TNFSF9 WILD-TYPE" "TNFSF9 WILD-TYPE" "TNFSF9 WILD-TYPE" "TNFSF9 WILD-TYPE" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
"TNFSF9 WILD-TYPE" "TNFSF9 WILD-TYPE"   "TNFSF9 MUTATED" "TNFSF9 WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
"TNFSF9 WILD-TYPE" "TNFSF9 WILD-TYPE"   "TNFSF9 MUTATED"   "TNFSF9 MUTATED" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
  "TNFSF9 MUTATED"   "TNFSF9 MUTATED" "TNFSF9 WILD-TYPE" "TNFSF9 WILD-TYPE" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
"TNFSF9 WILD-TYPE" "TNFSF9 WILD-TYPE" "TNFSF9 WILD-TYPE"   "TNFSF9 MUTATED" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
"TNFSF9 WILD-TYPE" "TNFSF9 WILD-TYPE"   "TNFSF9 MUTATED"   "TNFSF9 MUTATED" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
  "TNFSF9 MUTATED"   "TNFSF9 MUTATED" "TNFSF9 WILD-TYPE" "TNFSF9 WILD-TYPE" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
"TNFSF9 WILD-TYPE" "TNFSF9 WILD-TYPE" "TNFSF9 WILD-TYPE"   "TNFSF9 MUTATED" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
"TNFSF9 WILD-TYPE" "TNFSF9 WILD-TYPE" "TNFSF9 WILD-TYPE" "TNFSF9 WILD-TYPE" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
"TNFSF9 WILD-TYPE" "TNFSF9 WILD-TYPE" "TNFSF9 WILD-TYPE" "TNFSF9 WILD-TYPE" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
"TNFSF9 WILD-TYPE" "TNFSF9 WILD-TYPE" "TNFSF9 WILD-TYPE" "TNFSF9 WILD-TYPE" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"TNFSF9 WILD-TYPE" "TNFSF9 WILD-TYPE" "TNFSF9 WILD-TYPE" "TNFSF9 WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"TNFSF9 WILD-TYPE" "TNFSF9 WILD-TYPE"   "TNFSF9 MUTATED" "TNFSF9 WILD-TYPE" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
"TNFSF9 WILD-TYPE" "TNFSF9 WILD-TYPE" "TNFSF9 WILD-TYPE" "TNFSF9 WILD-TYPE" 
      TCGA-US-A77J 
"TNFSF9 WILD-TYPE" 
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
  "TNFSF9 MUTATED"   "TNFSF9 MUTATED"   "TNFSF9 MUTATED"   "TNFSF9 MUTATED" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"TNFSF9 WILD-TYPE" "TNFSF9 WILD-TYPE" "TNFSF9 WILD-TYPE" "TNFSF9 WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
  "TNFSF9 MUTATED" "TNFSF9 WILD-TYPE" "TNFSF9 WILD-TYPE" "TNFSF9 WILD-TYPE" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"TNFSF9 WILD-TYPE" "TNFSF9 WILD-TYPE" "TNFSF9 WILD-TYPE" "TNFSF9 WILD-TYPE" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
"TNFSF9 WILD-TYPE" "TNFSF9 WILD-TYPE"   "TNFSF9 MUTATED" "TNFSF9 WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
"TNFSF9 WILD-TYPE" "TNFSF9 WILD-TYPE"   "TNFSF9 MUTATED"   "TNFSF9 MUTATED" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
  "TNFSF9 MUTATED"   "TNFSF9 MUTATED" "TNFSF9 WILD-TYPE" "TNFSF9 WILD-TYPE" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
"TNFSF9 WILD-TYPE" "TNFSF9 WILD-TYPE" "TNFSF9 WILD-TYPE"   "TNFSF9 MUTATED" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
"TNFSF9 WILD-TYPE" "TNFSF9 WILD-TYPE"   "TNFSF9 MUTATED"   "TNFSF9 MUTATED" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
  "TNFSF9 MUTATED"   "TNFSF9 MUTATED" "TNFSF9 WILD-TYPE" "TNFSF9 WILD-TYPE" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
"TNFSF9 WILD-TYPE" "TNFSF9 WILD-TYPE" "TNFSF9 WILD-TYPE"   "TNFSF9 MUTATED" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
"TNFSF9 WILD-TYPE" "TNFSF9 WILD-TYPE" "TNFSF9 WILD-TYPE" "TNFSF9 WILD-TYPE" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
"TNFSF9 WILD-TYPE" "TNFSF9 WILD-TYPE" "TNFSF9 WILD-TYPE" "TNFSF9 WILD-TYPE" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
"TNFSF9 WILD-TYPE" "TNFSF9 WILD-TYPE" "TNFSF9 WILD-TYPE" "TNFSF9 WILD-TYPE" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"TNFSF9 WILD-TYPE" "TNFSF9 WILD-TYPE" "TNFSF9 WILD-TYPE" "TNFSF9 WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"TNFSF9 WILD-TYPE" "TNFSF9 WILD-TYPE"   "TNFSF9 MUTATED" "TNFSF9 WILD-TYPE" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
"TNFSF9 WILD-TYPE" "TNFSF9 WILD-TYPE" "TNFSF9 WILD-TYPE" "TNFSF9 WILD-TYPE" 
      TCGA-US-A77J 
"TNFSF9 WILD-TYPE" 
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
  "TNFSF9 MUTATED"   "TNFSF9 MUTATED"   "TNFSF9 MUTATED"   "TNFSF9 MUTATED" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"TNFSF9 WILD-TYPE" "TNFSF9 WILD-TYPE" "TNFSF9 WILD-TYPE" "TNFSF9 WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
  "TNFSF9 MUTATED" "TNFSF9 WILD-TYPE" "TNFSF9 WILD-TYPE" "TNFSF9 WILD-TYPE" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"TNFSF9 WILD-TYPE" "TNFSF9 WILD-TYPE" "TNFSF9 WILD-TYPE" "TNFSF9 WILD-TYPE" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
"TNFSF9 WILD-TYPE" "TNFSF9 WILD-TYPE"   "TNFSF9 MUTATED" "TNFSF9 WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
"TNFSF9 WILD-TYPE" "TNFSF9 WILD-TYPE"   "TNFSF9 MUTATED"   "TNFSF9 MUTATED" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
  "TNFSF9 MUTATED"   "TNFSF9 MUTATED" "TNFSF9 WILD-TYPE" "TNFSF9 WILD-TYPE" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
"TNFSF9 WILD-TYPE" "TNFSF9 WILD-TYPE" "TNFSF9 WILD-TYPE"   "TNFSF9 MUTATED" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
"TNFSF9 WILD-TYPE" "TNFSF9 WILD-TYPE"   "TNFSF9 MUTATED"   "TNFSF9 MUTATED" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
  "TNFSF9 MUTATED"   "TNFSF9 MUTATED" "TNFSF9 WILD-TYPE" "TNFSF9 WILD-TYPE" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
"TNFSF9 WILD-TYPE" "TNFSF9 WILD-TYPE" "TNFSF9 WILD-TYPE"   "TNFSF9 MUTATED" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
"TNFSF9 WILD-TYPE" "TNFSF9 WILD-TYPE" "TNFSF9 WILD-TYPE" "TNFSF9 WILD-TYPE" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
"TNFSF9 WILD-TYPE" "TNFSF9 WILD-TYPE" "TNFSF9 WILD-TYPE" "TNFSF9 WILD-TYPE" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
"TNFSF9 WILD-TYPE" "TNFSF9 WILD-TYPE" "TNFSF9 WILD-TYPE" "TNFSF9 WILD-TYPE" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"TNFSF9 WILD-TYPE" "TNFSF9 WILD-TYPE" "TNFSF9 WILD-TYPE" "TNFSF9 WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"TNFSF9 WILD-TYPE" "TNFSF9 WILD-TYPE"   "TNFSF9 MUTATED" "TNFSF9 WILD-TYPE" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
"TNFSF9 WILD-TYPE" "TNFSF9 WILD-TYPE" "TNFSF9 WILD-TYPE" "TNFSF9 WILD-TYPE" 
      TCGA-US-A77J 
"TNFSF9 WILD-TYPE" 
[1] "hr=" "1.1"
D147V2, continuous
                  vv
clus               STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  TNFSF9 MUTATED          0        0         2        15         0        0
  TNFSF9 WILD-TYPE        1        4         9        36         2        3
D147V3, multiclass
                  vv
clus               T1+T2 T3+T4
  TNFSF9 MUTATED       1    16
  TNFSF9 WILD-TYPE     5    50
D147V4, multiclass
       clus
vv      TNFSF9 MUTATED TNFSF9 WILD-TYPE
  T1+T2              1                5
  T3+T4             16               50
D147V5, binary
                  cls
clus                0  1
  TNFSF9 MUTATED    2 15
  TNFSF9 WILD-TYPE 15 39
[1] "tbl2"
                  cls
clus               [,1] [,2]
  TNFSF9 MUTATED      2   15
  TNFSF9 WILD-TYPE   15   39
   clus
vv  TNFSF9 MUTATED TNFSF9 WILD-TYPE
  0              2               15
  1             15               39
                  vv
clus               M0 M1 MX
  TNFSF9 MUTATED    6  0 11
  TNFSF9 WILD-TYPE 33  3 19
D147V6, multiclass
    clus
vv   TNFSF9 MUTATED TNFSF9 WILD-TYPE
  M0              6               33
  M1              0                3
  MX             11               19
D147V7, binary
                  cls
clus                0  1
  TNFSF9 MUTATED    7 10
  TNFSF9 WILD-TYPE 29 26
[1] "tbl2"
                  cls
clus               [,1] [,2]
  TNFSF9 MUTATED      7   10
  TNFSF9 WILD-TYPE   29   26
        clus
vv       TNFSF9 MUTATED TNFSF9 WILD-TYPE
  FEMALE              7               29
  MALE               10               26
                  vv
clus               PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  TNFSF9 MUTATED                                    14
  TNFSF9 WILD-TYPE                                  51
                  vv
clus               PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  TNFSF9 MUTATED                                       2
  TNFSF9 WILD-TYPE                                     2
                  vv
clus               PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  TNFSF9 MUTATED                                                  0
  TNFSF9 WILD-TYPE                                                2
D147V8, multiclass
                                                  clus
vv                                                 TNFSF9 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                          14
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                         2
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA              0
                                                  clus
vv                                                 TNFSF9 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                            51
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                           2
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                2
D147V9, continuous
D147V10, continuous
[1] "Remove cluster labels:" "TNFSF9 MUTATED"        
clus
  TNFSF9 MUTATED TNFSF9 WILD-TYPE 
               2               17 
      TCGA-FB-A4P5       TCGA-FB-A4P6       TCGA-FB-A5VM       TCGA-FB-A78T 
"TNFSF9 WILD-TYPE" "TNFSF9 WILD-TYPE" "TNFSF9 WILD-TYPE" "TNFSF9 WILD-TYPE" 
      TCGA-FB-A7DR       TCGA-H6-8124       TCGA-H8-A6C1       TCGA-IB-7644 
"TNFSF9 WILD-TYPE" "TNFSF9 WILD-TYPE" "TNFSF9 WILD-TYPE" "TNFSF9 WILD-TYPE" 
      TCGA-IB-7649       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7891 
"TNFSF9 WILD-TYPE" "TNFSF9 WILD-TYPE" "TNFSF9 WILD-TYPE" "TNFSF9 WILD-TYPE" 
      TCGA-IB-8126       TCGA-IB-8127       TCGA-IB-A5SS       TCGA-IB-A6UG 
"TNFSF9 WILD-TYPE" "TNFSF9 WILD-TYPE" "TNFSF9 WILD-TYPE" "TNFSF9 WILD-TYPE" 
      TCGA-OE-A75W 
"TNFSF9 WILD-TYPE" 
                  vv
clus               R0 R1 RX
  TNFSF9 MUTATED    8  6  2
  TNFSF9 WILD-TYPE 34 18  0
D147V11, multiclass
    clus
vv   TNFSF9 MUTATED TNFSF9 WILD-TYPE
  R0              8               34
  R1              6               18
  RX              2                0
D147V12, continuous

Clustering(148) Variable = OTOF MUTATION ANALYSIS
D148V1, survival
                sevent
clus2             0  1
  OTOF MUTATED    7  5
  OTOF WILD-TYPE 33 24
  OTOF MUTATED OTOF WILD-TYPE 
            12             57 
  OTOF MUTATED OTOF WILD-TYPE 
             5             24 
$`OTOF MUTATED`
TCGA-F2-7276 TCGA-F2-A44H TCGA-FB-A5VM TCGA-HZ-7919 TCGA-HZ-7924 TCGA-HZ-A49H 
        7.10        19.27         2.47         0.66        12.13         0.95 
TCGA-IB-7647 TCGA-IB-7651 TCGA-IB-7887 TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-A5ST 
       21.90        19.82         3.62        15.98         0.56         0.26 

$`OTOF WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-A44G TCGA-FB-A4P5 TCGA-FB-A4P6 
       10.98         9.70        11.84         5.03         0.13        11.93 
TCGA-FB-A545 TCGA-FB-A78T TCGA-FB-A7DR TCGA-FZ-5920 TCGA-FZ-5922 TCGA-FZ-5923 
       12.66         0.03         5.46         2.01        36.20        20.81 
TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-7922 
       12.89         7.66        13.02         7.89         0.92         0.13 
TCGA-HZ-7923 TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 
        0.26        11.87         0.26         0.62         0.79         0.69 
TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G 
        3.95         0.92         0.53         0.16         2.99         0.76 
TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7649 
        6.38         1.51        11.41        49.38         4.77        15.35 
TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 
       15.65        27.98         4.04        43.79        15.81        19.66 
TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ 
       16.04         3.85        17.16        10.82         9.86         7.20 
TCGA-IB-A5SS TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W TCGA-PZ-A5RE TCGA-Q3-A5QY 
       15.12         1.35         4.18         3.62         8.12        13.68 
TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
       16.80        14.14        18.67 

  OTOF MUTATED OTOF WILD-TYPE 
          0.26           0.03 
  OTOF MUTATED OTOF WILD-TYPE 
         21.90          49.38 
  OTOF MUTATED OTOF WILD-TYPE 
          5.36           7.89 
[1] "0.3 - 21.9 (5.4)" "0.0 - 49.4 (7.9)"
    TCGA-F2-6879     TCGA-F2-6880     TCGA-F2-7273     TCGA-F2-7276 
"OTOF WILD-TYPE" "OTOF WILD-TYPE" "OTOF WILD-TYPE"   "OTOF MUTATED" 
    TCGA-F2-A44G     TCGA-F2-A44H     TCGA-FB-A4P5     TCGA-FB-A4P6 
"OTOF WILD-TYPE"   "OTOF MUTATED" "OTOF WILD-TYPE" "OTOF WILD-TYPE" 
    TCGA-FB-A545     TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-FB-A7DR 
"OTOF WILD-TYPE"   "OTOF MUTATED" "OTOF WILD-TYPE" "OTOF WILD-TYPE" 
    TCGA-FZ-5920     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-H6-8124 
"OTOF WILD-TYPE" "OTOF WILD-TYPE" "OTOF WILD-TYPE" "OTOF WILD-TYPE" 
    TCGA-H6-A45N     TCGA-H8-A6C1     TCGA-HZ-7289     TCGA-HZ-7918 
"OTOF WILD-TYPE" "OTOF WILD-TYPE" "OTOF WILD-TYPE" "OTOF WILD-TYPE" 
    TCGA-HZ-7919     TCGA-HZ-7922     TCGA-HZ-7923     TCGA-HZ-7924 
  "OTOF MUTATED" "OTOF WILD-TYPE" "OTOF WILD-TYPE"   "OTOF MUTATED" 
    TCGA-HZ-7925     TCGA-HZ-7926     TCGA-HZ-8001     TCGA-HZ-8002 
"OTOF WILD-TYPE" "OTOF WILD-TYPE" "OTOF WILD-TYPE" "OTOF WILD-TYPE" 
    TCGA-HZ-8003     TCGA-HZ-8005     TCGA-HZ-8315     TCGA-HZ-8317 
"OTOF WILD-TYPE" "OTOF WILD-TYPE" "OTOF WILD-TYPE" "OTOF WILD-TYPE" 
    TCGA-HZ-8636     TCGA-HZ-8638     TCGA-HZ-A49G     TCGA-HZ-A49H 
"OTOF WILD-TYPE" "OTOF WILD-TYPE" "OTOF WILD-TYPE"   "OTOF MUTATED" 
    TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-IB-7644     TCGA-IB-7645 
"OTOF WILD-TYPE" "OTOF WILD-TYPE" "OTOF WILD-TYPE" "OTOF WILD-TYPE" 
    TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7651 
"OTOF WILD-TYPE"   "OTOF MUTATED" "OTOF WILD-TYPE"   "OTOF MUTATED" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887 
"OTOF WILD-TYPE" "OTOF WILD-TYPE" "OTOF WILD-TYPE"   "OTOF MUTATED" 
    TCGA-IB-7888     TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891 
"OTOF WILD-TYPE" "OTOF WILD-TYPE" "OTOF WILD-TYPE" "OTOF WILD-TYPE" 
    TCGA-IB-7893     TCGA-IB-7897     TCGA-IB-8126     TCGA-IB-8127 
"OTOF WILD-TYPE"   "OTOF MUTATED"   "OTOF MUTATED" "OTOF WILD-TYPE" 
    TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS 
"OTOF WILD-TYPE" "OTOF WILD-TYPE" "OTOF WILD-TYPE" "OTOF WILD-TYPE" 
    TCGA-IB-A5ST     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
  "OTOF MUTATED" "OTOF WILD-TYPE" "OTOF WILD-TYPE" "OTOF WILD-TYPE" 
    TCGA-PZ-A5RE     TCGA-Q3-A5QY     TCGA-US-A779     TCGA-US-A77E 
"OTOF WILD-TYPE" "OTOF WILD-TYPE" "OTOF WILD-TYPE" "OTOF WILD-TYPE" 
    TCGA-US-A77J 
"OTOF WILD-TYPE" 
    TCGA-F2-6879     TCGA-F2-6880     TCGA-F2-7273     TCGA-F2-7276 
"OTOF WILD-TYPE" "OTOF WILD-TYPE" "OTOF WILD-TYPE"   "OTOF MUTATED" 
    TCGA-F2-A44G     TCGA-F2-A44H     TCGA-FB-A4P5     TCGA-FB-A4P6 
"OTOF WILD-TYPE"   "OTOF MUTATED" "OTOF WILD-TYPE" "OTOF WILD-TYPE" 
    TCGA-FB-A545     TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-FB-A7DR 
"OTOF WILD-TYPE"   "OTOF MUTATED" "OTOF WILD-TYPE" "OTOF WILD-TYPE" 
    TCGA-FZ-5920     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-H6-8124 
"OTOF WILD-TYPE" "OTOF WILD-TYPE" "OTOF WILD-TYPE" "OTOF WILD-TYPE" 
    TCGA-H6-A45N     TCGA-H8-A6C1     TCGA-HZ-7289     TCGA-HZ-7918 
"OTOF WILD-TYPE" "OTOF WILD-TYPE" "OTOF WILD-TYPE" "OTOF WILD-TYPE" 
    TCGA-HZ-7919     TCGA-HZ-7922     TCGA-HZ-7923     TCGA-HZ-7924 
  "OTOF MUTATED" "OTOF WILD-TYPE" "OTOF WILD-TYPE"   "OTOF MUTATED" 
    TCGA-HZ-7925     TCGA-HZ-7926     TCGA-HZ-8001     TCGA-HZ-8002 
"OTOF WILD-TYPE" "OTOF WILD-TYPE" "OTOF WILD-TYPE" "OTOF WILD-TYPE" 
    TCGA-HZ-8003     TCGA-HZ-8005     TCGA-HZ-8315     TCGA-HZ-8317 
"OTOF WILD-TYPE" "OTOF WILD-TYPE" "OTOF WILD-TYPE" "OTOF WILD-TYPE" 
    TCGA-HZ-8636     TCGA-HZ-8638     TCGA-HZ-A49G     TCGA-HZ-A49H 
"OTOF WILD-TYPE" "OTOF WILD-TYPE" "OTOF WILD-TYPE"   "OTOF MUTATED" 
    TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-IB-7644     TCGA-IB-7645 
"OTOF WILD-TYPE" "OTOF WILD-TYPE" "OTOF WILD-TYPE" "OTOF WILD-TYPE" 
    TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7651 
"OTOF WILD-TYPE"   "OTOF MUTATED" "OTOF WILD-TYPE"   "OTOF MUTATED" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887 
"OTOF WILD-TYPE" "OTOF WILD-TYPE" "OTOF WILD-TYPE"   "OTOF MUTATED" 
    TCGA-IB-7888     TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891 
"OTOF WILD-TYPE" "OTOF WILD-TYPE" "OTOF WILD-TYPE" "OTOF WILD-TYPE" 
    TCGA-IB-7893     TCGA-IB-7897     TCGA-IB-8126     TCGA-IB-8127 
"OTOF WILD-TYPE"   "OTOF MUTATED"   "OTOF MUTATED" "OTOF WILD-TYPE" 
    TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS 
"OTOF WILD-TYPE" "OTOF WILD-TYPE" "OTOF WILD-TYPE" "OTOF WILD-TYPE" 
    TCGA-IB-A5ST     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
  "OTOF MUTATED" "OTOF WILD-TYPE" "OTOF WILD-TYPE" "OTOF WILD-TYPE" 
    TCGA-PZ-A5RE     TCGA-Q3-A5QY     TCGA-US-A779     TCGA-US-A77E 
"OTOF WILD-TYPE" "OTOF WILD-TYPE" "OTOF WILD-TYPE" "OTOF WILD-TYPE" 
    TCGA-US-A77J 
"OTOF WILD-TYPE" 
    TCGA-F2-6879     TCGA-F2-6880     TCGA-F2-7273     TCGA-F2-7276 
"OTOF WILD-TYPE" "OTOF WILD-TYPE" "OTOF WILD-TYPE"   "OTOF MUTATED" 
    TCGA-F2-A44G     TCGA-F2-A44H     TCGA-FB-A4P5     TCGA-FB-A4P6 
"OTOF WILD-TYPE"   "OTOF MUTATED" "OTOF WILD-TYPE" "OTOF WILD-TYPE" 
    TCGA-FB-A545     TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-FB-A7DR 
"OTOF WILD-TYPE"   "OTOF MUTATED" "OTOF WILD-TYPE" "OTOF WILD-TYPE" 
    TCGA-FZ-5920     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-H6-8124 
"OTOF WILD-TYPE" "OTOF WILD-TYPE" "OTOF WILD-TYPE" "OTOF WILD-TYPE" 
    TCGA-H6-A45N     TCGA-H8-A6C1     TCGA-HZ-7289     TCGA-HZ-7918 
"OTOF WILD-TYPE" "OTOF WILD-TYPE" "OTOF WILD-TYPE" "OTOF WILD-TYPE" 
    TCGA-HZ-7919     TCGA-HZ-7922     TCGA-HZ-7923     TCGA-HZ-7924 
  "OTOF MUTATED" "OTOF WILD-TYPE" "OTOF WILD-TYPE"   "OTOF MUTATED" 
    TCGA-HZ-7925     TCGA-HZ-7926     TCGA-HZ-8001     TCGA-HZ-8002 
"OTOF WILD-TYPE" "OTOF WILD-TYPE" "OTOF WILD-TYPE" "OTOF WILD-TYPE" 
    TCGA-HZ-8003     TCGA-HZ-8005     TCGA-HZ-8315     TCGA-HZ-8317 
"OTOF WILD-TYPE" "OTOF WILD-TYPE" "OTOF WILD-TYPE" "OTOF WILD-TYPE" 
    TCGA-HZ-8636     TCGA-HZ-8638     TCGA-HZ-A49G     TCGA-HZ-A49H 
"OTOF WILD-TYPE" "OTOF WILD-TYPE" "OTOF WILD-TYPE"   "OTOF MUTATED" 
    TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-IB-7644     TCGA-IB-7645 
"OTOF WILD-TYPE" "OTOF WILD-TYPE" "OTOF WILD-TYPE" "OTOF WILD-TYPE" 
    TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7651 
"OTOF WILD-TYPE"   "OTOF MUTATED" "OTOF WILD-TYPE"   "OTOF MUTATED" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887 
"OTOF WILD-TYPE" "OTOF WILD-TYPE" "OTOF WILD-TYPE"   "OTOF MUTATED" 
    TCGA-IB-7888     TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891 
"OTOF WILD-TYPE" "OTOF WILD-TYPE" "OTOF WILD-TYPE" "OTOF WILD-TYPE" 
    TCGA-IB-7893     TCGA-IB-7897     TCGA-IB-8126     TCGA-IB-8127 
"OTOF WILD-TYPE"   "OTOF MUTATED"   "OTOF MUTATED" "OTOF WILD-TYPE" 
    TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS 
"OTOF WILD-TYPE" "OTOF WILD-TYPE" "OTOF WILD-TYPE" "OTOF WILD-TYPE" 
    TCGA-IB-A5ST     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
  "OTOF MUTATED" "OTOF WILD-TYPE" "OTOF WILD-TYPE" "OTOF WILD-TYPE" 
    TCGA-PZ-A5RE     TCGA-Q3-A5QY     TCGA-US-A779     TCGA-US-A77E 
"OTOF WILD-TYPE" "OTOF WILD-TYPE" "OTOF WILD-TYPE" "OTOF WILD-TYPE" 
    TCGA-US-A77J 
"OTOF WILD-TYPE" 
[1] "hr=" "1"  
D148V2, continuous
                vv
clus             STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  OTOF MUTATED          0        1         2         8         1        0
  OTOF WILD-TYPE        1        3         9        43         1        3
D148V3, multiclass
                vv
clus             T1+T2 T3+T4
  OTOF MUTATED       1    11
  OTOF WILD-TYPE     5    55
D148V4, multiclass
       clus
vv      OTOF MUTATED OTOF WILD-TYPE
  T1+T2            1              5
  T3+T4           11             55
D148V5, binary
                cls
clus              0  1
  OTOF MUTATED    3  9
  OTOF WILD-TYPE 14 45
[1] "tbl2"
                cls
clus             [,1] [,2]
  OTOF MUTATED      3    9
  OTOF WILD-TYPE   14   45
   clus
vv  OTOF MUTATED OTOF WILD-TYPE
  0            3             14
  1            9             45
                vv
clus             M0 M1 MX
  OTOF MUTATED   10  0  2
  OTOF WILD-TYPE 29  3 28
D148V6, multiclass
    clus
vv   OTOF MUTATED OTOF WILD-TYPE
  M0           10             29
  M1            0              3
  MX            2             28
D148V7, binary
                cls
clus              0  1
  OTOF MUTATED    9  3
  OTOF WILD-TYPE 27 33
[1] "tbl2"
                cls
clus             [,1] [,2]
  OTOF MUTATED      9    3
  OTOF WILD-TYPE   27   33
        clus
vv       OTOF MUTATED OTOF WILD-TYPE
  FEMALE            9             27
  MALE              3             33
                vv
clus             PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  OTOF MUTATED                                    12
  OTOF WILD-TYPE                                  53
                vv
clus             PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  OTOF MUTATED                                       0
  OTOF WILD-TYPE                                     4
                vv
clus             PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  OTOF MUTATED                                                  0
  OTOF WILD-TYPE                                                2
D148V8, multiclass
                                                  clus
vv                                                 OTOF MUTATED OTOF WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                        12             53
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                       0              4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA            0              2
D148V9, continuous
D148V10, continuous
                vv
clus             R0 R1 RX
  OTOF MUTATED    8  4  0
  OTOF WILD-TYPE 34 20  2
D148V11, multiclass
    clus
vv   OTOF MUTATED OTOF WILD-TYPE
  R0            8             34
  R1            4             20
  RX            0              2
D148V12, continuous

Clustering(149) Variable = ABCC2 MUTATION ANALYSIS
D149V1, survival
                 sevent
clus2              0  1
  ABCC2 MUTATED    5  6
  ABCC2 WILD-TYPE 35 23
  ABCC2 MUTATED ABCC2 WILD-TYPE 
             11              58 
  ABCC2 MUTATED ABCC2 WILD-TYPE 
              6              23 
$`ABCC2 MUTATED`
TCGA-FZ-5920 TCGA-HZ-7919 TCGA-HZ-8003 TCGA-HZ-8317 TCGA-HZ-A49G TCGA-IB-7644 
        2.01         0.66         0.69         0.53         0.76        11.41 
TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7651 TCGA-IB-7897 TCGA-IB-8127 
       21.90        15.35        19.82        15.98        17.16 

$`ABCC2 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P5 TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR 
        0.13        11.93        12.66         2.47         0.03         5.46 
TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7289 
       36.20        20.81        12.89         7.66        13.02         7.89 
TCGA-HZ-7918 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 
        0.92         0.13         0.26        12.13        11.87         0.26 
TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8636 TCGA-HZ-8638 
        0.62         0.79         3.95         0.92         0.16         2.99 
TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7652 
        0.95         6.38         1.51        49.38         4.77        15.65 
TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 
       27.98         4.04         3.62        43.79        15.81        19.66 
TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-8126 TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ 
       16.04         3.85         0.56        10.82         9.86         7.20 
TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W TCGA-PZ-A5RE 
       15.12         0.26         1.35         4.18         3.62         8.12 
TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
       13.68        16.80        14.14        18.67 

  ABCC2 MUTATED ABCC2 WILD-TYPE 
           0.53            0.03 
  ABCC2 MUTATED ABCC2 WILD-TYPE 
          21.90           49.38 
  ABCC2 MUTATED ABCC2 WILD-TYPE 
          11.41            7.43 
[1] "0.5 - 21.9 (11.4)" "0.0 - 49.4 (7.4)" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"ABCC2 WILD-TYPE" "ABCC2 WILD-TYPE" "ABCC2 WILD-TYPE" "ABCC2 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"ABCC2 WILD-TYPE" "ABCC2 WILD-TYPE" "ABCC2 WILD-TYPE" "ABCC2 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"ABCC2 WILD-TYPE" "ABCC2 WILD-TYPE" "ABCC2 WILD-TYPE" "ABCC2 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
  "ABCC2 MUTATED" "ABCC2 WILD-TYPE" "ABCC2 WILD-TYPE" "ABCC2 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"ABCC2 WILD-TYPE" "ABCC2 WILD-TYPE" "ABCC2 WILD-TYPE" "ABCC2 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
  "ABCC2 MUTATED" "ABCC2 WILD-TYPE" "ABCC2 WILD-TYPE" "ABCC2 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"ABCC2 WILD-TYPE" "ABCC2 WILD-TYPE" "ABCC2 WILD-TYPE" "ABCC2 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
  "ABCC2 MUTATED" "ABCC2 WILD-TYPE" "ABCC2 WILD-TYPE"   "ABCC2 MUTATED" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"ABCC2 WILD-TYPE" "ABCC2 WILD-TYPE"   "ABCC2 MUTATED" "ABCC2 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"ABCC2 WILD-TYPE" "ABCC2 WILD-TYPE"   "ABCC2 MUTATED" "ABCC2 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"ABCC2 WILD-TYPE"   "ABCC2 MUTATED"   "ABCC2 MUTATED"   "ABCC2 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"ABCC2 WILD-TYPE" "ABCC2 WILD-TYPE" "ABCC2 WILD-TYPE" "ABCC2 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"ABCC2 WILD-TYPE" "ABCC2 WILD-TYPE" "ABCC2 WILD-TYPE" "ABCC2 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"ABCC2 WILD-TYPE"   "ABCC2 MUTATED" "ABCC2 WILD-TYPE"   "ABCC2 MUTATED" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"ABCC2 WILD-TYPE" "ABCC2 WILD-TYPE" "ABCC2 WILD-TYPE" "ABCC2 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"ABCC2 WILD-TYPE" "ABCC2 WILD-TYPE" "ABCC2 WILD-TYPE" "ABCC2 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"ABCC2 WILD-TYPE" "ABCC2 WILD-TYPE" "ABCC2 WILD-TYPE" "ABCC2 WILD-TYPE" 
     TCGA-US-A77J 
"ABCC2 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"ABCC2 WILD-TYPE" "ABCC2 WILD-TYPE" "ABCC2 WILD-TYPE" "ABCC2 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"ABCC2 WILD-TYPE" "ABCC2 WILD-TYPE" "ABCC2 WILD-TYPE" "ABCC2 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"ABCC2 WILD-TYPE" "ABCC2 WILD-TYPE" "ABCC2 WILD-TYPE" "ABCC2 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
  "ABCC2 MUTATED" "ABCC2 WILD-TYPE" "ABCC2 WILD-TYPE" "ABCC2 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"ABCC2 WILD-TYPE" "ABCC2 WILD-TYPE" "ABCC2 WILD-TYPE" "ABCC2 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
  "ABCC2 MUTATED" "ABCC2 WILD-TYPE" "ABCC2 WILD-TYPE" "ABCC2 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"ABCC2 WILD-TYPE" "ABCC2 WILD-TYPE" "ABCC2 WILD-TYPE" "ABCC2 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
  "ABCC2 MUTATED" "ABCC2 WILD-TYPE" "ABCC2 WILD-TYPE"   "ABCC2 MUTATED" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"ABCC2 WILD-TYPE" "ABCC2 WILD-TYPE"   "ABCC2 MUTATED" "ABCC2 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"ABCC2 WILD-TYPE" "ABCC2 WILD-TYPE"   "ABCC2 MUTATED" "ABCC2 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"ABCC2 WILD-TYPE"   "ABCC2 MUTATED"   "ABCC2 MUTATED"   "ABCC2 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"ABCC2 WILD-TYPE" "ABCC2 WILD-TYPE" "ABCC2 WILD-TYPE" "ABCC2 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"ABCC2 WILD-TYPE" "ABCC2 WILD-TYPE" "ABCC2 WILD-TYPE" "ABCC2 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"ABCC2 WILD-TYPE"   "ABCC2 MUTATED" "ABCC2 WILD-TYPE"   "ABCC2 MUTATED" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"ABCC2 WILD-TYPE" "ABCC2 WILD-TYPE" "ABCC2 WILD-TYPE" "ABCC2 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"ABCC2 WILD-TYPE" "ABCC2 WILD-TYPE" "ABCC2 WILD-TYPE" "ABCC2 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"ABCC2 WILD-TYPE" "ABCC2 WILD-TYPE" "ABCC2 WILD-TYPE" "ABCC2 WILD-TYPE" 
     TCGA-US-A77J 
"ABCC2 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"ABCC2 WILD-TYPE" "ABCC2 WILD-TYPE" "ABCC2 WILD-TYPE" "ABCC2 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"ABCC2 WILD-TYPE" "ABCC2 WILD-TYPE" "ABCC2 WILD-TYPE" "ABCC2 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"ABCC2 WILD-TYPE" "ABCC2 WILD-TYPE" "ABCC2 WILD-TYPE" "ABCC2 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
  "ABCC2 MUTATED" "ABCC2 WILD-TYPE" "ABCC2 WILD-TYPE" "ABCC2 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"ABCC2 WILD-TYPE" "ABCC2 WILD-TYPE" "ABCC2 WILD-TYPE" "ABCC2 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
  "ABCC2 MUTATED" "ABCC2 WILD-TYPE" "ABCC2 WILD-TYPE" "ABCC2 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"ABCC2 WILD-TYPE" "ABCC2 WILD-TYPE" "ABCC2 WILD-TYPE" "ABCC2 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
  "ABCC2 MUTATED" "ABCC2 WILD-TYPE" "ABCC2 WILD-TYPE"   "ABCC2 MUTATED" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"ABCC2 WILD-TYPE" "ABCC2 WILD-TYPE"   "ABCC2 MUTATED" "ABCC2 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"ABCC2 WILD-TYPE" "ABCC2 WILD-TYPE"   "ABCC2 MUTATED" "ABCC2 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"ABCC2 WILD-TYPE"   "ABCC2 MUTATED"   "ABCC2 MUTATED"   "ABCC2 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"ABCC2 WILD-TYPE" "ABCC2 WILD-TYPE" "ABCC2 WILD-TYPE" "ABCC2 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"ABCC2 WILD-TYPE" "ABCC2 WILD-TYPE" "ABCC2 WILD-TYPE" "ABCC2 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"ABCC2 WILD-TYPE"   "ABCC2 MUTATED" "ABCC2 WILD-TYPE"   "ABCC2 MUTATED" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"ABCC2 WILD-TYPE" "ABCC2 WILD-TYPE" "ABCC2 WILD-TYPE" "ABCC2 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"ABCC2 WILD-TYPE" "ABCC2 WILD-TYPE" "ABCC2 WILD-TYPE" "ABCC2 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"ABCC2 WILD-TYPE" "ABCC2 WILD-TYPE" "ABCC2 WILD-TYPE" "ABCC2 WILD-TYPE" 
     TCGA-US-A77J 
"ABCC2 WILD-TYPE" 
[1] "hr=" "1.2"
D149V2, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  ABCC2 MUTATED          0        1         0        10         0        1
  ABCC2 WILD-TYPE        1        3        11        41         2        2
D149V3, multiclass
                 vv
clus              T1+T2 T3+T4
  ABCC2 MUTATED       2    10
  ABCC2 WILD-TYPE     4    56
D149V4, multiclass
       clus
vv      ABCC2 MUTATED ABCC2 WILD-TYPE
  T1+T2             2               4
  T3+T4            10              56
D149V5, binary
                 cls
clus               0  1
  ABCC2 MUTATED    1 11
  ABCC2 WILD-TYPE 16 43
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ABCC2 MUTATED      1   11
  ABCC2 WILD-TYPE   16   43
   clus
vv  ABCC2 MUTATED ABCC2 WILD-TYPE
  0             1              16
  1            11              43
                 vv
clus              M0 M1 MX
  ABCC2 MUTATED    7  1  4
  ABCC2 WILD-TYPE 32  2 26
D149V6, multiclass
    clus
vv   ABCC2 MUTATED ABCC2 WILD-TYPE
  M0             7              32
  M1             1               2
  MX             4              26
D149V7, binary
                 cls
clus               0  1
  ABCC2 MUTATED    9  3
  ABCC2 WILD-TYPE 27 33
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ABCC2 MUTATED      9    3
  ABCC2 WILD-TYPE   27   33
        clus
vv       ABCC2 MUTATED ABCC2 WILD-TYPE
  FEMALE             9              27
  MALE               3              33
                 vv
clus              PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  ABCC2 MUTATED                                    12
  ABCC2 WILD-TYPE                                  53
                 vv
clus              PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  ABCC2 MUTATED                                       0
  ABCC2 WILD-TYPE                                     4
                 vv
clus              PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  ABCC2 MUTATED                                                  0
  ABCC2 WILD-TYPE                                                2
D149V8, multiclass
                                                  clus
vv                                                 ABCC2 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                         12
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                        0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA             0
                                                  clus
vv                                                 ABCC2 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                           53
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                          4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA               2
D149V9, continuous
D149V10, continuous
                 vv
clus              R0 R1 RX
  ABCC2 MUTATED    5  7  0
  ABCC2 WILD-TYPE 37 17  2
D149V11, multiclass
    clus
vv   ABCC2 MUTATED ABCC2 WILD-TYPE
  R0             5              37
  R1             7              17
  RX             0               2
D149V12, continuous

Clustering(150) Variable = MST1 MUTATION ANALYSIS
D150V1, survival
                sevent
clus2             0  1
  MST1 MUTATED    5  6
  MST1 WILD-TYPE 35 23
  MST1 MUTATED MST1 WILD-TYPE 
            11             58 
  MST1 MUTATED MST1 WILD-TYPE 
             6             23 
$`MST1 MUTATED`
TCGA-F2-6879 TCGA-F2-A44G TCGA-FB-A4P5 TCGA-FB-A7DR TCGA-HZ-7922 TCGA-HZ-8317 
       10.98         5.03         0.13         5.46         0.13         0.53 
TCGA-HZ-A49H TCGA-IB-7646 TCGA-IB-7651 TCGA-IB-7889 TCGA-IB-7891 
        0.95         4.77        19.82        15.81        16.04 

$`MST1 WILD-TYPE`
TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44H TCGA-FB-A4P6 TCGA-FB-A545 
        9.70        11.84         7.10        19.27        11.93        12.66 
TCGA-FB-A5VM TCGA-FB-A78T TCGA-FZ-5920 TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 
        2.47         0.03         2.01        36.20        20.81        12.89 
TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7923 
        7.66        13.02         7.89         0.92         0.66         0.26 
TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 
       12.13        11.87         0.26         0.62         0.79         0.69 
TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A4BH 
        3.95         0.92         0.16         2.99         0.76         6.38 
TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7652 
        1.51        11.41        49.38        21.90        15.35        15.65 
TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7890 TCGA-IB-7893 
       27.98         4.04         3.62        43.79        19.66         3.85 
TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ 
       15.98         0.56        17.16        10.82         9.86         7.20 
TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W TCGA-PZ-A5RE 
       15.12         0.26         1.35         4.18         3.62         8.12 
TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
       13.68        16.80        14.14        18.67 

  MST1 MUTATED MST1 WILD-TYPE 
          0.13           0.03 
  MST1 MUTATED MST1 WILD-TYPE 
         19.82          49.38 
  MST1 MUTATED MST1 WILD-TYPE 
         5.030          8.005 
[1] "0.1 - 19.8 (5.0)" "0.0 - 49.4 (8.0)"
    TCGA-F2-6879     TCGA-F2-6880     TCGA-F2-7273     TCGA-F2-7276 
  "MST1 MUTATED" "MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" 
    TCGA-F2-A44G     TCGA-F2-A44H     TCGA-FB-A4P5     TCGA-FB-A4P6 
  "MST1 MUTATED" "MST1 WILD-TYPE"   "MST1 MUTATED" "MST1 WILD-TYPE" 
    TCGA-FB-A545     TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-FB-A7DR 
"MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE"   "MST1 MUTATED" 
    TCGA-FZ-5920     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-H6-8124 
"MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" 
    TCGA-H6-A45N     TCGA-H8-A6C1     TCGA-HZ-7289     TCGA-HZ-7918 
"MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" 
    TCGA-HZ-7919     TCGA-HZ-7922     TCGA-HZ-7923     TCGA-HZ-7924 
"MST1 WILD-TYPE"   "MST1 MUTATED" "MST1 WILD-TYPE" "MST1 WILD-TYPE" 
    TCGA-HZ-7925     TCGA-HZ-7926     TCGA-HZ-8001     TCGA-HZ-8002 
"MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" 
    TCGA-HZ-8003     TCGA-HZ-8005     TCGA-HZ-8315     TCGA-HZ-8317 
"MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE"   "MST1 MUTATED" 
    TCGA-HZ-8636     TCGA-HZ-8638     TCGA-HZ-A49G     TCGA-HZ-A49H 
"MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE"   "MST1 MUTATED" 
    TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-IB-7644     TCGA-IB-7645 
"MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" 
    TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7651 
  "MST1 MUTATED" "MST1 WILD-TYPE" "MST1 WILD-TYPE"   "MST1 MUTATED" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887 
"MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" 
    TCGA-IB-7888     TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891 
"MST1 WILD-TYPE"   "MST1 MUTATED" "MST1 WILD-TYPE"   "MST1 MUTATED" 
    TCGA-IB-7893     TCGA-IB-7897     TCGA-IB-8126     TCGA-IB-8127 
"MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" 
    TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS 
"MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" 
    TCGA-IB-A5ST     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
"MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" 
    TCGA-PZ-A5RE     TCGA-Q3-A5QY     TCGA-US-A779     TCGA-US-A77E 
"MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" 
    TCGA-US-A77J 
"MST1 WILD-TYPE" 
    TCGA-F2-6879     TCGA-F2-6880     TCGA-F2-7273     TCGA-F2-7276 
  "MST1 MUTATED" "MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" 
    TCGA-F2-A44G     TCGA-F2-A44H     TCGA-FB-A4P5     TCGA-FB-A4P6 
  "MST1 MUTATED" "MST1 WILD-TYPE"   "MST1 MUTATED" "MST1 WILD-TYPE" 
    TCGA-FB-A545     TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-FB-A7DR 
"MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE"   "MST1 MUTATED" 
    TCGA-FZ-5920     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-H6-8124 
"MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" 
    TCGA-H6-A45N     TCGA-H8-A6C1     TCGA-HZ-7289     TCGA-HZ-7918 
"MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" 
    TCGA-HZ-7919     TCGA-HZ-7922     TCGA-HZ-7923     TCGA-HZ-7924 
"MST1 WILD-TYPE"   "MST1 MUTATED" "MST1 WILD-TYPE" "MST1 WILD-TYPE" 
    TCGA-HZ-7925     TCGA-HZ-7926     TCGA-HZ-8001     TCGA-HZ-8002 
"MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" 
    TCGA-HZ-8003     TCGA-HZ-8005     TCGA-HZ-8315     TCGA-HZ-8317 
"MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE"   "MST1 MUTATED" 
    TCGA-HZ-8636     TCGA-HZ-8638     TCGA-HZ-A49G     TCGA-HZ-A49H 
"MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE"   "MST1 MUTATED" 
    TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-IB-7644     TCGA-IB-7645 
"MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" 
    TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7651 
  "MST1 MUTATED" "MST1 WILD-TYPE" "MST1 WILD-TYPE"   "MST1 MUTATED" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887 
"MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" 
    TCGA-IB-7888     TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891 
"MST1 WILD-TYPE"   "MST1 MUTATED" "MST1 WILD-TYPE"   "MST1 MUTATED" 
    TCGA-IB-7893     TCGA-IB-7897     TCGA-IB-8126     TCGA-IB-8127 
"MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" 
    TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS 
"MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" 
    TCGA-IB-A5ST     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
"MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" 
    TCGA-PZ-A5RE     TCGA-Q3-A5QY     TCGA-US-A779     TCGA-US-A77E 
"MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" 
    TCGA-US-A77J 
"MST1 WILD-TYPE" 
    TCGA-F2-6879     TCGA-F2-6880     TCGA-F2-7273     TCGA-F2-7276 
  "MST1 MUTATED" "MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" 
    TCGA-F2-A44G     TCGA-F2-A44H     TCGA-FB-A4P5     TCGA-FB-A4P6 
  "MST1 MUTATED" "MST1 WILD-TYPE"   "MST1 MUTATED" "MST1 WILD-TYPE" 
    TCGA-FB-A545     TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-FB-A7DR 
"MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE"   "MST1 MUTATED" 
    TCGA-FZ-5920     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-H6-8124 
"MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" 
    TCGA-H6-A45N     TCGA-H8-A6C1     TCGA-HZ-7289     TCGA-HZ-7918 
"MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" 
    TCGA-HZ-7919     TCGA-HZ-7922     TCGA-HZ-7923     TCGA-HZ-7924 
"MST1 WILD-TYPE"   "MST1 MUTATED" "MST1 WILD-TYPE" "MST1 WILD-TYPE" 
    TCGA-HZ-7925     TCGA-HZ-7926     TCGA-HZ-8001     TCGA-HZ-8002 
"MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" 
    TCGA-HZ-8003     TCGA-HZ-8005     TCGA-HZ-8315     TCGA-HZ-8317 
"MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE"   "MST1 MUTATED" 
    TCGA-HZ-8636     TCGA-HZ-8638     TCGA-HZ-A49G     TCGA-HZ-A49H 
"MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE"   "MST1 MUTATED" 
    TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-IB-7644     TCGA-IB-7645 
"MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" 
    TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7651 
  "MST1 MUTATED" "MST1 WILD-TYPE" "MST1 WILD-TYPE"   "MST1 MUTATED" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887 
"MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" 
    TCGA-IB-7888     TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891 
"MST1 WILD-TYPE"   "MST1 MUTATED" "MST1 WILD-TYPE"   "MST1 MUTATED" 
    TCGA-IB-7893     TCGA-IB-7897     TCGA-IB-8126     TCGA-IB-8127 
"MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" 
    TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS 
"MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" 
    TCGA-IB-A5ST     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
"MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" 
    TCGA-PZ-A5RE     TCGA-Q3-A5QY     TCGA-US-A779     TCGA-US-A77E 
"MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" "MST1 WILD-TYPE" 
    TCGA-US-A77J 
"MST1 WILD-TYPE" 
[1] "hr=" "2.1"
D150V2, continuous
                vv
clus             STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  MST1 MUTATED          0        0         1        10         0        0
  MST1 WILD-TYPE        1        4        10        41         2        3
D150V3, multiclass
                vv
clus             T1+T2 T3+T4
  MST1 MUTATED       0    11
  MST1 WILD-TYPE     6    55
D150V4, multiclass
       clus
vv      MST1 MUTATED MST1 WILD-TYPE
  T1+T2            0              6
  T3+T4           11             55
D150V5, binary
                cls
clus              0  1
  MST1 MUTATED    0 10
  MST1 WILD-TYPE 17 44
[1] "tbl2"
                cls
clus             [,1] [,2]
  MST1 MUTATED      0   10
  MST1 WILD-TYPE   17   44
   clus
vv  MST1 MUTATED MST1 WILD-TYPE
  0            0             17
  1           10             44
                vv
clus             M0 M1 MX
  MST1 MUTATED    7  0  4
  MST1 WILD-TYPE 32  3 26
D150V6, multiclass
    clus
vv   MST1 MUTATED MST1 WILD-TYPE
  M0            7             32
  M1            0              3
  MX            4             26
D150V7, binary
                cls
clus              0  1
  MST1 MUTATED    7  4
  MST1 WILD-TYPE 29 32
[1] "tbl2"
                cls
clus             [,1] [,2]
  MST1 MUTATED      7    4
  MST1 WILD-TYPE   29   32
        clus
vv       MST1 MUTATED MST1 WILD-TYPE
  FEMALE            7             29
  MALE              4             32
                vv
clus             PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  MST1 MUTATED                                     9
  MST1 WILD-TYPE                                  56
                vv
clus             PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  MST1 MUTATED                                       0
  MST1 WILD-TYPE                                     4
                vv
clus             PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  MST1 MUTATED                                                  1
  MST1 WILD-TYPE                                                1
D150V8, multiclass
                                                  clus
vv                                                 MST1 MUTATED MST1 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                         9             56
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                       0              4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA            1              1
D150V9, continuous
D150V10, continuous
                vv
clus             R0 R1 RX
  MST1 MUTATED    8  3  0
  MST1 WILD-TYPE 34 21  2
D150V11, multiclass
    clus
vv   MST1 MUTATED MST1 WILD-TYPE
  R0            8             34
  R1            3             21
  RX            0              2
D150V12, continuous

Clustering(151) Variable = SCD MUTATION ANALYSIS
D151V1, survival
               sevent
clus2            0  1
  SCD MUTATED    3  4
  SCD WILD-TYPE 37 25
  SCD MUTATED SCD WILD-TYPE 
            7            62 
  SCD MUTATED SCD WILD-TYPE 
            4            25 
$`SCD MUTATED`
TCGA-HZ-8001 TCGA-HZ-8003 TCGA-IB-7651 TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-7893 
        0.62         0.69        19.82        19.66        16.04         3.85 
TCGA-IB-7897 
       15.98 

$`SCD WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P5 TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR 
        0.13        11.93        12.66         2.47         0.03         5.46 
TCGA-FZ-5920 TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 
        2.01        36.20        20.81        12.89         7.66        13.02 
TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 
        7.89         0.92         0.66         0.13         0.26        12.13 
TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8002 TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 
       11.87         0.26         0.79         3.95         0.92         0.53 
TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK 
        0.16         2.99         0.76         0.95         6.38         1.51 
TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7652 
       11.41        49.38         4.77        21.90        15.35        15.65 
TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-8126 
       27.98         4.04         3.62        43.79        15.81         0.56 
TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST 
       17.16        10.82         9.86         7.20        15.12         0.26 
TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 
        1.35         4.18         3.62         8.12        13.68        16.80 
TCGA-US-A77E TCGA-US-A77J 
       14.14        18.67 

  SCD MUTATED SCD WILD-TYPE 
         0.62          0.03 
  SCD MUTATED SCD WILD-TYPE 
        19.82         49.38 
  SCD MUTATED SCD WILD-TYPE 
        15.98          7.43 
[1] "0.6 - 19.8 (16.0)" "0.0 - 49.4 (7.4)" 
   TCGA-F2-6879    TCGA-F2-6880    TCGA-F2-7273    TCGA-F2-7276    TCGA-F2-A44G 
"SCD WILD-TYPE" "SCD WILD-TYPE" "SCD WILD-TYPE" "SCD WILD-TYPE" "SCD WILD-TYPE" 
   TCGA-F2-A44H    TCGA-FB-A4P5    TCGA-FB-A4P6    TCGA-FB-A545    TCGA-FB-A5VM 
"SCD WILD-TYPE" "SCD WILD-TYPE" "SCD WILD-TYPE" "SCD WILD-TYPE" "SCD WILD-TYPE" 
   TCGA-FB-A78T    TCGA-FB-A7DR    TCGA-FZ-5920    TCGA-FZ-5922    TCGA-FZ-5923 
"SCD WILD-TYPE" "SCD WILD-TYPE" "SCD WILD-TYPE" "SCD WILD-TYPE" "SCD WILD-TYPE" 
   TCGA-H6-8124    TCGA-H6-A45N    TCGA-H8-A6C1    TCGA-HZ-7289    TCGA-HZ-7918 
"SCD WILD-TYPE" "SCD WILD-TYPE" "SCD WILD-TYPE" "SCD WILD-TYPE" "SCD WILD-TYPE" 
   TCGA-HZ-7919    TCGA-HZ-7922    TCGA-HZ-7923    TCGA-HZ-7924    TCGA-HZ-7925 
"SCD WILD-TYPE" "SCD WILD-TYPE" "SCD WILD-TYPE" "SCD WILD-TYPE" "SCD WILD-TYPE" 
   TCGA-HZ-7926    TCGA-HZ-8001    TCGA-HZ-8002    TCGA-HZ-8003    TCGA-HZ-8005 
"SCD WILD-TYPE"   "SCD MUTATED" "SCD WILD-TYPE"   "SCD MUTATED" "SCD WILD-TYPE" 
   TCGA-HZ-8315    TCGA-HZ-8317    TCGA-HZ-8636    TCGA-HZ-8638    TCGA-HZ-A49G 
"SCD WILD-TYPE" "SCD WILD-TYPE" "SCD WILD-TYPE" "SCD WILD-TYPE" "SCD WILD-TYPE" 
   TCGA-HZ-A49H    TCGA-HZ-A4BH    TCGA-HZ-A4BK    TCGA-IB-7644    TCGA-IB-7645 
"SCD WILD-TYPE" "SCD WILD-TYPE" "SCD WILD-TYPE" "SCD WILD-TYPE" "SCD WILD-TYPE" 
   TCGA-IB-7646    TCGA-IB-7647    TCGA-IB-7649    TCGA-IB-7651    TCGA-IB-7652 
"SCD WILD-TYPE" "SCD WILD-TYPE" "SCD WILD-TYPE"   "SCD MUTATED" "SCD WILD-TYPE" 
   TCGA-IB-7885    TCGA-IB-7886    TCGA-IB-7887    TCGA-IB-7888    TCGA-IB-7889 
"SCD WILD-TYPE" "SCD WILD-TYPE" "SCD WILD-TYPE" "SCD WILD-TYPE" "SCD WILD-TYPE" 
   TCGA-IB-7890    TCGA-IB-7891    TCGA-IB-7893    TCGA-IB-7897    TCGA-IB-8126 
  "SCD MUTATED"   "SCD MUTATED"   "SCD MUTATED"   "SCD MUTATED" "SCD WILD-TYPE" 
   TCGA-IB-8127    TCGA-IB-A5SO    TCGA-IB-A5SP    TCGA-IB-A5SQ    TCGA-IB-A5SS 
"SCD WILD-TYPE" "SCD WILD-TYPE" "SCD WILD-TYPE" "SCD WILD-TYPE" "SCD WILD-TYPE" 
   TCGA-IB-A5ST    TCGA-IB-A6UG    TCGA-LB-A7SX    TCGA-OE-A75W    TCGA-PZ-A5RE 
"SCD WILD-TYPE" "SCD WILD-TYPE" "SCD WILD-TYPE" "SCD WILD-TYPE" "SCD WILD-TYPE" 
   TCGA-Q3-A5QY    TCGA-US-A779    TCGA-US-A77E    TCGA-US-A77J 
"SCD WILD-TYPE" "SCD WILD-TYPE" "SCD WILD-TYPE" "SCD WILD-TYPE" 
   TCGA-F2-6879    TCGA-F2-6880    TCGA-F2-7273    TCGA-F2-7276    TCGA-F2-A44G 
"SCD WILD-TYPE" "SCD WILD-TYPE" "SCD WILD-TYPE" "SCD WILD-TYPE" "SCD WILD-TYPE" 
   TCGA-F2-A44H    TCGA-FB-A4P5    TCGA-FB-A4P6    TCGA-FB-A545    TCGA-FB-A5VM 
"SCD WILD-TYPE" "SCD WILD-TYPE" "SCD WILD-TYPE" "SCD WILD-TYPE" "SCD WILD-TYPE" 
   TCGA-FB-A78T    TCGA-FB-A7DR    TCGA-FZ-5920    TCGA-FZ-5922    TCGA-FZ-5923 
"SCD WILD-TYPE" "SCD WILD-TYPE" "SCD WILD-TYPE" "SCD WILD-TYPE" "SCD WILD-TYPE" 
   TCGA-H6-8124    TCGA-H6-A45N    TCGA-H8-A6C1    TCGA-HZ-7289    TCGA-HZ-7918 
"SCD WILD-TYPE" "SCD WILD-TYPE" "SCD WILD-TYPE" "SCD WILD-TYPE" "SCD WILD-TYPE" 
   TCGA-HZ-7919    TCGA-HZ-7922    TCGA-HZ-7923    TCGA-HZ-7924    TCGA-HZ-7925 
"SCD WILD-TYPE" "SCD WILD-TYPE" "SCD WILD-TYPE" "SCD WILD-TYPE" "SCD WILD-TYPE" 
   TCGA-HZ-7926    TCGA-HZ-8001    TCGA-HZ-8002    TCGA-HZ-8003    TCGA-HZ-8005 
"SCD WILD-TYPE"   "SCD MUTATED" "SCD WILD-TYPE"   "SCD MUTATED" "SCD WILD-TYPE" 
   TCGA-HZ-8315    TCGA-HZ-8317    TCGA-HZ-8636    TCGA-HZ-8638    TCGA-HZ-A49G 
"SCD WILD-TYPE" "SCD WILD-TYPE" "SCD WILD-TYPE" "SCD WILD-TYPE" "SCD WILD-TYPE" 
   TCGA-HZ-A49H    TCGA-HZ-A4BH    TCGA-HZ-A4BK    TCGA-IB-7644    TCGA-IB-7645 
"SCD WILD-TYPE" "SCD WILD-TYPE" "SCD WILD-TYPE" "SCD WILD-TYPE" "SCD WILD-TYPE" 
   TCGA-IB-7646    TCGA-IB-7647    TCGA-IB-7649    TCGA-IB-7651    TCGA-IB-7652 
"SCD WILD-TYPE" "SCD WILD-TYPE" "SCD WILD-TYPE"   "SCD MUTATED" "SCD WILD-TYPE" 
   TCGA-IB-7885    TCGA-IB-7886    TCGA-IB-7887    TCGA-IB-7888    TCGA-IB-7889 
"SCD WILD-TYPE" "SCD WILD-TYPE" "SCD WILD-TYPE" "SCD WILD-TYPE" "SCD WILD-TYPE" 
   TCGA-IB-7890    TCGA-IB-7891    TCGA-IB-7893    TCGA-IB-7897    TCGA-IB-8126 
  "SCD MUTATED"   "SCD MUTATED"   "SCD MUTATED"   "SCD MUTATED" "SCD WILD-TYPE" 
   TCGA-IB-8127    TCGA-IB-A5SO    TCGA-IB-A5SP    TCGA-IB-A5SQ    TCGA-IB-A5SS 
"SCD WILD-TYPE" "SCD WILD-TYPE" "SCD WILD-TYPE" "SCD WILD-TYPE" "SCD WILD-TYPE" 
   TCGA-IB-A5ST    TCGA-IB-A6UG    TCGA-LB-A7SX    TCGA-OE-A75W    TCGA-PZ-A5RE 
"SCD WILD-TYPE" "SCD WILD-TYPE" "SCD WILD-TYPE" "SCD WILD-TYPE" "SCD WILD-TYPE" 
   TCGA-Q3-A5QY    TCGA-US-A779    TCGA-US-A77E    TCGA-US-A77J 
"SCD WILD-TYPE" "SCD WILD-TYPE" "SCD WILD-TYPE" "SCD WILD-TYPE" 
   TCGA-F2-6879    TCGA-F2-6880    TCGA-F2-7273    TCGA-F2-7276    TCGA-F2-A44G 
"SCD WILD-TYPE" "SCD WILD-TYPE" "SCD WILD-TYPE" "SCD WILD-TYPE" "SCD WILD-TYPE" 
   TCGA-F2-A44H    TCGA-FB-A4P5    TCGA-FB-A4P6    TCGA-FB-A545    TCGA-FB-A5VM 
"SCD WILD-TYPE" "SCD WILD-TYPE" "SCD WILD-TYPE" "SCD WILD-TYPE" "SCD WILD-TYPE" 
   TCGA-FB-A78T    TCGA-FB-A7DR    TCGA-FZ-5920    TCGA-FZ-5922    TCGA-FZ-5923 
"SCD WILD-TYPE" "SCD WILD-TYPE" "SCD WILD-TYPE" "SCD WILD-TYPE" "SCD WILD-TYPE" 
   TCGA-H6-8124    TCGA-H6-A45N    TCGA-H8-A6C1    TCGA-HZ-7289    TCGA-HZ-7918 
"SCD WILD-TYPE" "SCD WILD-TYPE" "SCD WILD-TYPE" "SCD WILD-TYPE" "SCD WILD-TYPE" 
   TCGA-HZ-7919    TCGA-HZ-7922    TCGA-HZ-7923    TCGA-HZ-7924    TCGA-HZ-7925 
"SCD WILD-TYPE" "SCD WILD-TYPE" "SCD WILD-TYPE" "SCD WILD-TYPE" "SCD WILD-TYPE" 
   TCGA-HZ-7926    TCGA-HZ-8001    TCGA-HZ-8002    TCGA-HZ-8003    TCGA-HZ-8005 
"SCD WILD-TYPE"   "SCD MUTATED" "SCD WILD-TYPE"   "SCD MUTATED" "SCD WILD-TYPE" 
   TCGA-HZ-8315    TCGA-HZ-8317    TCGA-HZ-8636    TCGA-HZ-8638    TCGA-HZ-A49G 
"SCD WILD-TYPE" "SCD WILD-TYPE" "SCD WILD-TYPE" "SCD WILD-TYPE" "SCD WILD-TYPE" 
   TCGA-HZ-A49H    TCGA-HZ-A4BH    TCGA-HZ-A4BK    TCGA-IB-7644    TCGA-IB-7645 
"SCD WILD-TYPE" "SCD WILD-TYPE" "SCD WILD-TYPE" "SCD WILD-TYPE" "SCD WILD-TYPE" 
   TCGA-IB-7646    TCGA-IB-7647    TCGA-IB-7649    TCGA-IB-7651    TCGA-IB-7652 
"SCD WILD-TYPE" "SCD WILD-TYPE" "SCD WILD-TYPE"   "SCD MUTATED" "SCD WILD-TYPE" 
   TCGA-IB-7885    TCGA-IB-7886    TCGA-IB-7887    TCGA-IB-7888    TCGA-IB-7889 
"SCD WILD-TYPE" "SCD WILD-TYPE" "SCD WILD-TYPE" "SCD WILD-TYPE" "SCD WILD-TYPE" 
   TCGA-IB-7890    TCGA-IB-7891    TCGA-IB-7893    TCGA-IB-7897    TCGA-IB-8126 
  "SCD MUTATED"   "SCD MUTATED"   "SCD MUTATED"   "SCD MUTATED" "SCD WILD-TYPE" 
   TCGA-IB-8127    TCGA-IB-A5SO    TCGA-IB-A5SP    TCGA-IB-A5SQ    TCGA-IB-A5SS 
"SCD WILD-TYPE" "SCD WILD-TYPE" "SCD WILD-TYPE" "SCD WILD-TYPE" "SCD WILD-TYPE" 
   TCGA-IB-A5ST    TCGA-IB-A6UG    TCGA-LB-A7SX    TCGA-OE-A75W    TCGA-PZ-A5RE 
"SCD WILD-TYPE" "SCD WILD-TYPE" "SCD WILD-TYPE" "SCD WILD-TYPE" "SCD WILD-TYPE" 
   TCGA-Q3-A5QY    TCGA-US-A779    TCGA-US-A77E    TCGA-US-A77J 
"SCD WILD-TYPE" "SCD WILD-TYPE" "SCD WILD-TYPE" "SCD WILD-TYPE" 
[1] "hr=" "1.1"
D151V2, continuous
               vv
clus            STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  SCD MUTATED          0        2         1         4         1        0
  SCD WILD-TYPE        1        2        10        47         1        3
D151V3, multiclass
               vv
clus            T1+T2 T3+T4
  SCD MUTATED       2     6
  SCD WILD-TYPE     4    60
D151V4, multiclass
       clus
vv      SCD MUTATED SCD WILD-TYPE
  T1+T2           2             4
  T3+T4           6            60
D151V5, binary
               cls
clus             0  1
  SCD MUTATED    4  4
  SCD WILD-TYPE 13 50
[1] "tbl2"
               cls
clus            [,1] [,2]
  SCD MUTATED      4    4
  SCD WILD-TYPE   13   50
   clus
vv  SCD MUTATED SCD WILD-TYPE
  0           4            13
  1           4            50
               vv
clus            M0 M1 MX
  SCD MUTATED    5  0  3
  SCD WILD-TYPE 34  3 27
D151V6, multiclass
    clus
vv   SCD MUTATED SCD WILD-TYPE
  M0           5            34
  M1           0             3
  MX           3            27
D151V7, binary
               cls
clus             0  1
  SCD MUTATED    3  5
  SCD WILD-TYPE 33 31
[1] "tbl2"
               cls
clus            [,1] [,2]
  SCD MUTATED      3    5
  SCD WILD-TYPE   33   31
        clus
vv       SCD MUTATED SCD WILD-TYPE
  FEMALE           3            33
  MALE             5            31
               vv
clus            PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  SCD MUTATED                                     8
  SCD WILD-TYPE                                  57
               vv
clus            PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  SCD MUTATED                                       0
  SCD WILD-TYPE                                     4
               vv
clus            PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  SCD MUTATED                                                  0
  SCD WILD-TYPE                                                2
D151V8, multiclass
                                                  clus
vv                                                 SCD MUTATED SCD WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                        8            57
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                      0             4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA           0             2
D151V9, continuous
[1] "Remove cluster labels:" "SCD MUTATED"           
clus
  SCD MUTATED SCD WILD-TYPE 
            2            20 
   TCGA-F2-6880    TCGA-FB-A4P5    TCGA-FB-A4P6    TCGA-FB-A5VM    TCGA-FB-A78T 
"SCD WILD-TYPE" "SCD WILD-TYPE" "SCD WILD-TYPE" "SCD WILD-TYPE" "SCD WILD-TYPE" 
   TCGA-FB-A7DR    TCGA-H6-8124    TCGA-H6-A45N    TCGA-H8-A6C1    TCGA-IB-7644 
"SCD WILD-TYPE" "SCD WILD-TYPE" "SCD WILD-TYPE" "SCD WILD-TYPE" "SCD WILD-TYPE" 
   TCGA-IB-7649    TCGA-IB-7885    TCGA-IB-7886    TCGA-IB-7887    TCGA-IB-8126 
"SCD WILD-TYPE" "SCD WILD-TYPE" "SCD WILD-TYPE" "SCD WILD-TYPE" "SCD WILD-TYPE" 
   TCGA-IB-8127    TCGA-IB-A5SS    TCGA-IB-A6UG    TCGA-LB-A7SX    TCGA-OE-A75W 
"SCD WILD-TYPE" "SCD WILD-TYPE" "SCD WILD-TYPE" "SCD WILD-TYPE" "SCD WILD-TYPE" 
D151V10, continuous
[1] "Remove cluster labels:" "SCD MUTATED"           
clus
  SCD MUTATED SCD WILD-TYPE 
            2            17 
   TCGA-FB-A4P5    TCGA-FB-A4P6    TCGA-FB-A5VM    TCGA-FB-A78T    TCGA-FB-A7DR 
"SCD WILD-TYPE" "SCD WILD-TYPE" "SCD WILD-TYPE" "SCD WILD-TYPE" "SCD WILD-TYPE" 
   TCGA-H6-8124    TCGA-H8-A6C1    TCGA-IB-7644    TCGA-IB-7649    TCGA-IB-7885 
"SCD WILD-TYPE" "SCD WILD-TYPE" "SCD WILD-TYPE" "SCD WILD-TYPE" "SCD WILD-TYPE" 
   TCGA-IB-7886    TCGA-IB-8126    TCGA-IB-8127    TCGA-IB-A5SS    TCGA-IB-A6UG 
"SCD WILD-TYPE" "SCD WILD-TYPE" "SCD WILD-TYPE" "SCD WILD-TYPE" "SCD WILD-TYPE" 
   TCGA-LB-A7SX    TCGA-OE-A75W 
"SCD WILD-TYPE" "SCD WILD-TYPE" 
               vv
clus            R0 R1 RX
  SCD MUTATED    8  0  0
  SCD WILD-TYPE 34 24  2
D151V11, multiclass
    clus
vv   SCD MUTATED SCD WILD-TYPE
  R0           8            34
  R1           0            24
  RX           0             2
D151V12, continuous

Clustering(152) Variable = FOXJ2 MUTATION ANALYSIS
D152V1, survival
                 sevent
clus2              0  1
  FOXJ2 MUTATED    7  2
  FOXJ2 WILD-TYPE 33 27
  FOXJ2 MUTATED FOXJ2 WILD-TYPE 
              9              60 
  FOXJ2 MUTATED FOXJ2 WILD-TYPE 
              2              27 
$`FOXJ2 MUTATED`
TCGA-F2-6880 TCGA-FB-A4P6 TCGA-HZ-7923 TCGA-HZ-8003 TCGA-HZ-A49G TCGA-HZ-A4BH 
        9.70        11.93         0.26         0.69         0.76         6.38 
TCGA-IB-7651 TCGA-IB-7885 TCGA-IB-7887 
       19.82        27.98         3.62 

$`FOXJ2 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H TCGA-FB-A4P5 
       10.98        11.84         7.10         5.03        19.27         0.13 
TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR TCGA-FZ-5920 TCGA-FZ-5922 
       12.66         2.47         0.03         5.46         2.01        36.20 
TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7289 TCGA-HZ-7918 
       20.81        12.89         7.66        13.02         7.89         0.92 
TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8001 
        0.66         0.13        12.13        11.87         0.26         0.62 
TCGA-HZ-8002 TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8636 TCGA-HZ-8638 
        0.79         3.95         0.92         0.53         0.16         2.99 
TCGA-HZ-A49H TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 
        0.95         1.51        11.41        49.38         4.77        21.90 
TCGA-IB-7649 TCGA-IB-7652 TCGA-IB-7886 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 
       15.35        15.65         4.04        43.79        15.81        19.66 
TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO 
       16.04         3.85        15.98         0.56        17.16        10.82 
TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX 
        9.86         7.20        15.12         0.26         1.35         4.18 
TCGA-OE-A75W TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
        3.62         8.12        13.68        16.80        14.14        18.67 

  FOXJ2 MUTATED FOXJ2 WILD-TYPE 
           0.26            0.03 
  FOXJ2 MUTATED FOXJ2 WILD-TYPE 
          27.98           49.38 
  FOXJ2 MUTATED FOXJ2 WILD-TYPE 
          6.380           7.775 
[1] "0.3 - 28.0 (6.4)" "0.0 - 49.4 (7.8)"
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"FOXJ2 WILD-TYPE"   "FOXJ2 MUTATED" "FOXJ2 WILD-TYPE" "FOXJ2 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"FOXJ2 WILD-TYPE" "FOXJ2 WILD-TYPE" "FOXJ2 WILD-TYPE"   "FOXJ2 MUTATED" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"FOXJ2 WILD-TYPE" "FOXJ2 WILD-TYPE" "FOXJ2 WILD-TYPE" "FOXJ2 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"FOXJ2 WILD-TYPE" "FOXJ2 WILD-TYPE" "FOXJ2 WILD-TYPE" "FOXJ2 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"FOXJ2 WILD-TYPE" "FOXJ2 WILD-TYPE" "FOXJ2 WILD-TYPE" "FOXJ2 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"FOXJ2 WILD-TYPE" "FOXJ2 WILD-TYPE"   "FOXJ2 MUTATED" "FOXJ2 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"FOXJ2 WILD-TYPE" "FOXJ2 WILD-TYPE" "FOXJ2 WILD-TYPE" "FOXJ2 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
  "FOXJ2 MUTATED" "FOXJ2 WILD-TYPE" "FOXJ2 WILD-TYPE" "FOXJ2 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"FOXJ2 WILD-TYPE" "FOXJ2 WILD-TYPE"   "FOXJ2 MUTATED" "FOXJ2 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
  "FOXJ2 MUTATED" "FOXJ2 WILD-TYPE" "FOXJ2 WILD-TYPE" "FOXJ2 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"FOXJ2 WILD-TYPE" "FOXJ2 WILD-TYPE" "FOXJ2 WILD-TYPE"   "FOXJ2 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"FOXJ2 WILD-TYPE"   "FOXJ2 MUTATED" "FOXJ2 WILD-TYPE"   "FOXJ2 MUTATED" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"FOXJ2 WILD-TYPE" "FOXJ2 WILD-TYPE" "FOXJ2 WILD-TYPE" "FOXJ2 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"FOXJ2 WILD-TYPE" "FOXJ2 WILD-TYPE" "FOXJ2 WILD-TYPE" "FOXJ2 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"FOXJ2 WILD-TYPE" "FOXJ2 WILD-TYPE" "FOXJ2 WILD-TYPE" "FOXJ2 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"FOXJ2 WILD-TYPE" "FOXJ2 WILD-TYPE" "FOXJ2 WILD-TYPE" "FOXJ2 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"FOXJ2 WILD-TYPE" "FOXJ2 WILD-TYPE" "FOXJ2 WILD-TYPE" "FOXJ2 WILD-TYPE" 
     TCGA-US-A77J 
"FOXJ2 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"FOXJ2 WILD-TYPE"   "FOXJ2 MUTATED" "FOXJ2 WILD-TYPE" "FOXJ2 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"FOXJ2 WILD-TYPE" "FOXJ2 WILD-TYPE" "FOXJ2 WILD-TYPE"   "FOXJ2 MUTATED" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"FOXJ2 WILD-TYPE" "FOXJ2 WILD-TYPE" "FOXJ2 WILD-TYPE" "FOXJ2 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"FOXJ2 WILD-TYPE" "FOXJ2 WILD-TYPE" "FOXJ2 WILD-TYPE" "FOXJ2 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"FOXJ2 WILD-TYPE" "FOXJ2 WILD-TYPE" "FOXJ2 WILD-TYPE" "FOXJ2 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"FOXJ2 WILD-TYPE" "FOXJ2 WILD-TYPE"   "FOXJ2 MUTATED" "FOXJ2 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"FOXJ2 WILD-TYPE" "FOXJ2 WILD-TYPE" "FOXJ2 WILD-TYPE" "FOXJ2 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
  "FOXJ2 MUTATED" "FOXJ2 WILD-TYPE" "FOXJ2 WILD-TYPE" "FOXJ2 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"FOXJ2 WILD-TYPE" "FOXJ2 WILD-TYPE"   "FOXJ2 MUTATED" "FOXJ2 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
  "FOXJ2 MUTATED" "FOXJ2 WILD-TYPE" "FOXJ2 WILD-TYPE" "FOXJ2 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"FOXJ2 WILD-TYPE" "FOXJ2 WILD-TYPE" "FOXJ2 WILD-TYPE"   "FOXJ2 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"FOXJ2 WILD-TYPE"   "FOXJ2 MUTATED" "FOXJ2 WILD-TYPE"   "FOXJ2 MUTATED" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"FOXJ2 WILD-TYPE" "FOXJ2 WILD-TYPE" "FOXJ2 WILD-TYPE" "FOXJ2 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"FOXJ2 WILD-TYPE" "FOXJ2 WILD-TYPE" "FOXJ2 WILD-TYPE" "FOXJ2 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"FOXJ2 WILD-TYPE" "FOXJ2 WILD-TYPE" "FOXJ2 WILD-TYPE" "FOXJ2 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"FOXJ2 WILD-TYPE" "FOXJ2 WILD-TYPE" "FOXJ2 WILD-TYPE" "FOXJ2 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"FOXJ2 WILD-TYPE" "FOXJ2 WILD-TYPE" "FOXJ2 WILD-TYPE" "FOXJ2 WILD-TYPE" 
     TCGA-US-A77J 
"FOXJ2 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"FOXJ2 WILD-TYPE"   "FOXJ2 MUTATED" "FOXJ2 WILD-TYPE" "FOXJ2 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"FOXJ2 WILD-TYPE" "FOXJ2 WILD-TYPE" "FOXJ2 WILD-TYPE"   "FOXJ2 MUTATED" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"FOXJ2 WILD-TYPE" "FOXJ2 WILD-TYPE" "FOXJ2 WILD-TYPE" "FOXJ2 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"FOXJ2 WILD-TYPE" "FOXJ2 WILD-TYPE" "FOXJ2 WILD-TYPE" "FOXJ2 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"FOXJ2 WILD-TYPE" "FOXJ2 WILD-TYPE" "FOXJ2 WILD-TYPE" "FOXJ2 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"FOXJ2 WILD-TYPE" "FOXJ2 WILD-TYPE"   "FOXJ2 MUTATED" "FOXJ2 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"FOXJ2 WILD-TYPE" "FOXJ2 WILD-TYPE" "FOXJ2 WILD-TYPE" "FOXJ2 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
  "FOXJ2 MUTATED" "FOXJ2 WILD-TYPE" "FOXJ2 WILD-TYPE" "FOXJ2 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"FOXJ2 WILD-TYPE" "FOXJ2 WILD-TYPE"   "FOXJ2 MUTATED" "FOXJ2 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
  "FOXJ2 MUTATED" "FOXJ2 WILD-TYPE" "FOXJ2 WILD-TYPE" "FOXJ2 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"FOXJ2 WILD-TYPE" "FOXJ2 WILD-TYPE" "FOXJ2 WILD-TYPE"   "FOXJ2 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"FOXJ2 WILD-TYPE"   "FOXJ2 MUTATED" "FOXJ2 WILD-TYPE"   "FOXJ2 MUTATED" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"FOXJ2 WILD-TYPE" "FOXJ2 WILD-TYPE" "FOXJ2 WILD-TYPE" "FOXJ2 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"FOXJ2 WILD-TYPE" "FOXJ2 WILD-TYPE" "FOXJ2 WILD-TYPE" "FOXJ2 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"FOXJ2 WILD-TYPE" "FOXJ2 WILD-TYPE" "FOXJ2 WILD-TYPE" "FOXJ2 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"FOXJ2 WILD-TYPE" "FOXJ2 WILD-TYPE" "FOXJ2 WILD-TYPE" "FOXJ2 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"FOXJ2 WILD-TYPE" "FOXJ2 WILD-TYPE" "FOXJ2 WILD-TYPE" "FOXJ2 WILD-TYPE" 
     TCGA-US-A77J 
"FOXJ2 WILD-TYPE" 
[1] "hr=" "2"  
D152V2, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  FOXJ2 MUTATED          0        0         1         8         0        0
  FOXJ2 WILD-TYPE        1        4        10        43         2        3
D152V3, multiclass
                 vv
clus              T1+T2 T3+T4
  FOXJ2 MUTATED       1     8
  FOXJ2 WILD-TYPE     5    58
D152V4, multiclass
       clus
vv      FOXJ2 MUTATED FOXJ2 WILD-TYPE
  T1+T2             1               5
  T3+T4             8              58
D152V5, binary
                 cls
clus               0  1
  FOXJ2 MUTATED    1  8
  FOXJ2 WILD-TYPE 16 46
[1] "tbl2"
                 cls
clus              [,1] [,2]
  FOXJ2 MUTATED      1    8
  FOXJ2 WILD-TYPE   16   46
   clus
vv  FOXJ2 MUTATED FOXJ2 WILD-TYPE
  0             1              16
  1             8              46
                 vv
clus              M0 M1 MX
  FOXJ2 MUTATED    4  0  5
  FOXJ2 WILD-TYPE 35  3 25
D152V6, multiclass
    clus
vv   FOXJ2 MUTATED FOXJ2 WILD-TYPE
  M0             4              35
  M1             0               3
  MX             5              25
D152V7, binary
                 cls
clus               0  1
  FOXJ2 MUTATED    5  4
  FOXJ2 WILD-TYPE 31 32
[1] "tbl2"
                 cls
clus              [,1] [,2]
  FOXJ2 MUTATED      5    4
  FOXJ2 WILD-TYPE   31   32
        clus
vv       FOXJ2 MUTATED FOXJ2 WILD-TYPE
  FEMALE             5              31
  MALE               4              32
                 vv
clus              PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  FOXJ2 MUTATED                                     9
  FOXJ2 WILD-TYPE                                  56
                 vv
clus              PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  FOXJ2 MUTATED                                       0
  FOXJ2 WILD-TYPE                                     4
                 vv
clus              PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  FOXJ2 MUTATED                                                  0
  FOXJ2 WILD-TYPE                                                2
D152V8, multiclass
                                                  clus
vv                                                 FOXJ2 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                          9
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                        0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA             0
                                                  clus
vv                                                 FOXJ2 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                           56
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                          4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA               2
D152V9, continuous
D152V10, continuous
                 vv
clus              R0 R1 RX
  FOXJ2 MUTATED    5  3  0
  FOXJ2 WILD-TYPE 37 21  2
D152V11, multiclass
    clus
vv   FOXJ2 MUTATED FOXJ2 WILD-TYPE
  R0             5              37
  R1             3              21
  RX             0               2
D152V12, continuous

Clustering(153) Variable = CCDC28B MUTATION ANALYSIS
D153V1, survival
                   sevent
clus2                0  1
  CCDC28B MUTATED    7  3
  CCDC28B WILD-TYPE 33 26
  CCDC28B MUTATED CCDC28B WILD-TYPE 
               10                59 
  CCDC28B MUTATED CCDC28B WILD-TYPE 
                3                26 
$`CCDC28B MUTATED`
TCGA-F2-6880 TCGA-F2-7276 TCGA-H6-8124 TCGA-H6-A45N TCGA-HZ-7924 TCGA-HZ-8001 
        9.70         7.10        12.89         7.66        12.13         0.62 
TCGA-HZ-8638 TCGA-HZ-A4BH TCGA-IB-7888 TCGA-PZ-A5RE 
        2.99         6.38        43.79         8.12 

$`CCDC28B WILD-TYPE`
TCGA-F2-6879 TCGA-F2-7273 TCGA-F2-A44G TCGA-F2-A44H TCGA-FB-A4P5 TCGA-FB-A4P6 
       10.98        11.84         5.03        19.27         0.13        11.93 
TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR TCGA-FZ-5920 TCGA-FZ-5922 
       12.66         2.47         0.03         5.46         2.01        36.20 
TCGA-FZ-5923 TCGA-H8-A6C1 TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7922 
       20.81        13.02         7.89         0.92         0.66         0.13 
TCGA-HZ-7923 TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 
        0.26        11.87         0.26         0.79         0.69         3.95 
TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8636 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BK 
        0.92         0.53         0.16         0.76         0.95         1.51 
TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7651 
       11.41        49.38         4.77        21.90        15.35        19.82 
TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7889 TCGA-IB-7890 
       15.65        27.98         4.04         3.62        15.81        19.66 
TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO 
       16.04         3.85        15.98         0.56        17.16        10.82 
TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX 
        9.86         7.20        15.12         0.26         1.35         4.18 
TCGA-OE-A75W TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
        3.62        13.68        16.80        14.14        18.67 

  CCDC28B MUTATED CCDC28B WILD-TYPE 
             0.62              0.03 
  CCDC28B MUTATED CCDC28B WILD-TYPE 
            43.79             49.38 
  CCDC28B MUTATED CCDC28B WILD-TYPE 
             7.89              7.20 
[1] "0.6 - 43.8 (7.9)" "0.0 - 49.4 (7.2)"
       TCGA-F2-6879        TCGA-F2-6880        TCGA-F2-7273        TCGA-F2-7276 
"CCDC28B WILD-TYPE"   "CCDC28B MUTATED" "CCDC28B WILD-TYPE"   "CCDC28B MUTATED" 
       TCGA-F2-A44G        TCGA-F2-A44H        TCGA-FB-A4P5        TCGA-FB-A4P6 
"CCDC28B WILD-TYPE" "CCDC28B WILD-TYPE" "CCDC28B WILD-TYPE" "CCDC28B WILD-TYPE" 
       TCGA-FB-A545        TCGA-FB-A5VM        TCGA-FB-A78T        TCGA-FB-A7DR 
"CCDC28B WILD-TYPE" "CCDC28B WILD-TYPE" "CCDC28B WILD-TYPE" "CCDC28B WILD-TYPE" 
       TCGA-FZ-5920        TCGA-FZ-5922        TCGA-FZ-5923        TCGA-H6-8124 
"CCDC28B WILD-TYPE" "CCDC28B WILD-TYPE" "CCDC28B WILD-TYPE"   "CCDC28B MUTATED" 
       TCGA-H6-A45N        TCGA-H8-A6C1        TCGA-HZ-7289        TCGA-HZ-7918 
  "CCDC28B MUTATED" "CCDC28B WILD-TYPE" "CCDC28B WILD-TYPE" "CCDC28B WILD-TYPE" 
       TCGA-HZ-7919        TCGA-HZ-7922        TCGA-HZ-7923        TCGA-HZ-7924 
"CCDC28B WILD-TYPE" "CCDC28B WILD-TYPE" "CCDC28B WILD-TYPE"   "CCDC28B MUTATED" 
       TCGA-HZ-7925        TCGA-HZ-7926        TCGA-HZ-8001        TCGA-HZ-8002 
"CCDC28B WILD-TYPE" "CCDC28B WILD-TYPE"   "CCDC28B MUTATED" "CCDC28B WILD-TYPE" 
       TCGA-HZ-8003        TCGA-HZ-8005        TCGA-HZ-8315        TCGA-HZ-8317 
"CCDC28B WILD-TYPE" "CCDC28B WILD-TYPE" "CCDC28B WILD-TYPE" "CCDC28B WILD-TYPE" 
       TCGA-HZ-8636        TCGA-HZ-8638        TCGA-HZ-A49G        TCGA-HZ-A49H 
"CCDC28B WILD-TYPE"   "CCDC28B MUTATED" "CCDC28B WILD-TYPE" "CCDC28B WILD-TYPE" 
       TCGA-HZ-A4BH        TCGA-HZ-A4BK        TCGA-IB-7644        TCGA-IB-7645 
  "CCDC28B MUTATED" "CCDC28B WILD-TYPE" "CCDC28B WILD-TYPE" "CCDC28B WILD-TYPE" 
       TCGA-IB-7646        TCGA-IB-7647        TCGA-IB-7649        TCGA-IB-7651 
"CCDC28B WILD-TYPE" "CCDC28B WILD-TYPE" "CCDC28B WILD-TYPE" "CCDC28B WILD-TYPE" 
       TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-7886        TCGA-IB-7887 
"CCDC28B WILD-TYPE" "CCDC28B WILD-TYPE" "CCDC28B WILD-TYPE" "CCDC28B WILD-TYPE" 
       TCGA-IB-7888        TCGA-IB-7889        TCGA-IB-7890        TCGA-IB-7891 
  "CCDC28B MUTATED" "CCDC28B WILD-TYPE" "CCDC28B WILD-TYPE" "CCDC28B WILD-TYPE" 
       TCGA-IB-7893        TCGA-IB-7897        TCGA-IB-8126        TCGA-IB-8127 
"CCDC28B WILD-TYPE" "CCDC28B WILD-TYPE" "CCDC28B WILD-TYPE" "CCDC28B WILD-TYPE" 
       TCGA-IB-A5SO        TCGA-IB-A5SP        TCGA-IB-A5SQ        TCGA-IB-A5SS 
"CCDC28B WILD-TYPE" "CCDC28B WILD-TYPE" "CCDC28B WILD-TYPE" "CCDC28B WILD-TYPE" 
       TCGA-IB-A5ST        TCGA-IB-A6UG        TCGA-LB-A7SX        TCGA-OE-A75W 
"CCDC28B WILD-TYPE" "CCDC28B WILD-TYPE" "CCDC28B WILD-TYPE" "CCDC28B WILD-TYPE" 
       TCGA-PZ-A5RE        TCGA-Q3-A5QY        TCGA-US-A779        TCGA-US-A77E 
  "CCDC28B MUTATED" "CCDC28B WILD-TYPE" "CCDC28B WILD-TYPE" "CCDC28B WILD-TYPE" 
       TCGA-US-A77J 
"CCDC28B WILD-TYPE" 
       TCGA-F2-6879        TCGA-F2-6880        TCGA-F2-7273        TCGA-F2-7276 
"CCDC28B WILD-TYPE"   "CCDC28B MUTATED" "CCDC28B WILD-TYPE"   "CCDC28B MUTATED" 
       TCGA-F2-A44G        TCGA-F2-A44H        TCGA-FB-A4P5        TCGA-FB-A4P6 
"CCDC28B WILD-TYPE" "CCDC28B WILD-TYPE" "CCDC28B WILD-TYPE" "CCDC28B WILD-TYPE" 
       TCGA-FB-A545        TCGA-FB-A5VM        TCGA-FB-A78T        TCGA-FB-A7DR 
"CCDC28B WILD-TYPE" "CCDC28B WILD-TYPE" "CCDC28B WILD-TYPE" "CCDC28B WILD-TYPE" 
       TCGA-FZ-5920        TCGA-FZ-5922        TCGA-FZ-5923        TCGA-H6-8124 
"CCDC28B WILD-TYPE" "CCDC28B WILD-TYPE" "CCDC28B WILD-TYPE"   "CCDC28B MUTATED" 
       TCGA-H6-A45N        TCGA-H8-A6C1        TCGA-HZ-7289        TCGA-HZ-7918 
  "CCDC28B MUTATED" "CCDC28B WILD-TYPE" "CCDC28B WILD-TYPE" "CCDC28B WILD-TYPE" 
       TCGA-HZ-7919        TCGA-HZ-7922        TCGA-HZ-7923        TCGA-HZ-7924 
"CCDC28B WILD-TYPE" "CCDC28B WILD-TYPE" "CCDC28B WILD-TYPE"   "CCDC28B MUTATED" 
       TCGA-HZ-7925        TCGA-HZ-7926        TCGA-HZ-8001        TCGA-HZ-8002 
"CCDC28B WILD-TYPE" "CCDC28B WILD-TYPE"   "CCDC28B MUTATED" "CCDC28B WILD-TYPE" 
       TCGA-HZ-8003        TCGA-HZ-8005        TCGA-HZ-8315        TCGA-HZ-8317 
"CCDC28B WILD-TYPE" "CCDC28B WILD-TYPE" "CCDC28B WILD-TYPE" "CCDC28B WILD-TYPE" 
       TCGA-HZ-8636        TCGA-HZ-8638        TCGA-HZ-A49G        TCGA-HZ-A49H 
"CCDC28B WILD-TYPE"   "CCDC28B MUTATED" "CCDC28B WILD-TYPE" "CCDC28B WILD-TYPE" 
       TCGA-HZ-A4BH        TCGA-HZ-A4BK        TCGA-IB-7644        TCGA-IB-7645 
  "CCDC28B MUTATED" "CCDC28B WILD-TYPE" "CCDC28B WILD-TYPE" "CCDC28B WILD-TYPE" 
       TCGA-IB-7646        TCGA-IB-7647        TCGA-IB-7649        TCGA-IB-7651 
"CCDC28B WILD-TYPE" "CCDC28B WILD-TYPE" "CCDC28B WILD-TYPE" "CCDC28B WILD-TYPE" 
       TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-7886        TCGA-IB-7887 
"CCDC28B WILD-TYPE" "CCDC28B WILD-TYPE" "CCDC28B WILD-TYPE" "CCDC28B WILD-TYPE" 
       TCGA-IB-7888        TCGA-IB-7889        TCGA-IB-7890        TCGA-IB-7891 
  "CCDC28B MUTATED" "CCDC28B WILD-TYPE" "CCDC28B WILD-TYPE" "CCDC28B WILD-TYPE" 
       TCGA-IB-7893        TCGA-IB-7897        TCGA-IB-8126        TCGA-IB-8127 
"CCDC28B WILD-TYPE" "CCDC28B WILD-TYPE" "CCDC28B WILD-TYPE" "CCDC28B WILD-TYPE" 
       TCGA-IB-A5SO        TCGA-IB-A5SP        TCGA-IB-A5SQ        TCGA-IB-A5SS 
"CCDC28B WILD-TYPE" "CCDC28B WILD-TYPE" "CCDC28B WILD-TYPE" "CCDC28B WILD-TYPE" 
       TCGA-IB-A5ST        TCGA-IB-A6UG        TCGA-LB-A7SX        TCGA-OE-A75W 
"CCDC28B WILD-TYPE" "CCDC28B WILD-TYPE" "CCDC28B WILD-TYPE" "CCDC28B WILD-TYPE" 
       TCGA-PZ-A5RE        TCGA-Q3-A5QY        TCGA-US-A779        TCGA-US-A77E 
  "CCDC28B MUTATED" "CCDC28B WILD-TYPE" "CCDC28B WILD-TYPE" "CCDC28B WILD-TYPE" 
       TCGA-US-A77J 
"CCDC28B WILD-TYPE" 
       TCGA-F2-6879        TCGA-F2-6880        TCGA-F2-7273        TCGA-F2-7276 
"CCDC28B WILD-TYPE"   "CCDC28B MUTATED" "CCDC28B WILD-TYPE"   "CCDC28B MUTATED" 
       TCGA-F2-A44G        TCGA-F2-A44H        TCGA-FB-A4P5        TCGA-FB-A4P6 
"CCDC28B WILD-TYPE" "CCDC28B WILD-TYPE" "CCDC28B WILD-TYPE" "CCDC28B WILD-TYPE" 
       TCGA-FB-A545        TCGA-FB-A5VM        TCGA-FB-A78T        TCGA-FB-A7DR 
"CCDC28B WILD-TYPE" "CCDC28B WILD-TYPE" "CCDC28B WILD-TYPE" "CCDC28B WILD-TYPE" 
       TCGA-FZ-5920        TCGA-FZ-5922        TCGA-FZ-5923        TCGA-H6-8124 
"CCDC28B WILD-TYPE" "CCDC28B WILD-TYPE" "CCDC28B WILD-TYPE"   "CCDC28B MUTATED" 
       TCGA-H6-A45N        TCGA-H8-A6C1        TCGA-HZ-7289        TCGA-HZ-7918 
  "CCDC28B MUTATED" "CCDC28B WILD-TYPE" "CCDC28B WILD-TYPE" "CCDC28B WILD-TYPE" 
       TCGA-HZ-7919        TCGA-HZ-7922        TCGA-HZ-7923        TCGA-HZ-7924 
"CCDC28B WILD-TYPE" "CCDC28B WILD-TYPE" "CCDC28B WILD-TYPE"   "CCDC28B MUTATED" 
       TCGA-HZ-7925        TCGA-HZ-7926        TCGA-HZ-8001        TCGA-HZ-8002 
"CCDC28B WILD-TYPE" "CCDC28B WILD-TYPE"   "CCDC28B MUTATED" "CCDC28B WILD-TYPE" 
       TCGA-HZ-8003        TCGA-HZ-8005        TCGA-HZ-8315        TCGA-HZ-8317 
"CCDC28B WILD-TYPE" "CCDC28B WILD-TYPE" "CCDC28B WILD-TYPE" "CCDC28B WILD-TYPE" 
       TCGA-HZ-8636        TCGA-HZ-8638        TCGA-HZ-A49G        TCGA-HZ-A49H 
"CCDC28B WILD-TYPE"   "CCDC28B MUTATED" "CCDC28B WILD-TYPE" "CCDC28B WILD-TYPE" 
       TCGA-HZ-A4BH        TCGA-HZ-A4BK        TCGA-IB-7644        TCGA-IB-7645 
  "CCDC28B MUTATED" "CCDC28B WILD-TYPE" "CCDC28B WILD-TYPE" "CCDC28B WILD-TYPE" 
       TCGA-IB-7646        TCGA-IB-7647        TCGA-IB-7649        TCGA-IB-7651 
"CCDC28B WILD-TYPE" "CCDC28B WILD-TYPE" "CCDC28B WILD-TYPE" "CCDC28B WILD-TYPE" 
       TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-7886        TCGA-IB-7887 
"CCDC28B WILD-TYPE" "CCDC28B WILD-TYPE" "CCDC28B WILD-TYPE" "CCDC28B WILD-TYPE" 
       TCGA-IB-7888        TCGA-IB-7889        TCGA-IB-7890        TCGA-IB-7891 
  "CCDC28B MUTATED" "CCDC28B WILD-TYPE" "CCDC28B WILD-TYPE" "CCDC28B WILD-TYPE" 
       TCGA-IB-7893        TCGA-IB-7897        TCGA-IB-8126        TCGA-IB-8127 
"CCDC28B WILD-TYPE" "CCDC28B WILD-TYPE" "CCDC28B WILD-TYPE" "CCDC28B WILD-TYPE" 
       TCGA-IB-A5SO        TCGA-IB-A5SP        TCGA-IB-A5SQ        TCGA-IB-A5SS 
"CCDC28B WILD-TYPE" "CCDC28B WILD-TYPE" "CCDC28B WILD-TYPE" "CCDC28B WILD-TYPE" 
       TCGA-IB-A5ST        TCGA-IB-A6UG        TCGA-LB-A7SX        TCGA-OE-A75W 
"CCDC28B WILD-TYPE" "CCDC28B WILD-TYPE" "CCDC28B WILD-TYPE" "CCDC28B WILD-TYPE" 
       TCGA-PZ-A5RE        TCGA-Q3-A5QY        TCGA-US-A779        TCGA-US-A77E 
  "CCDC28B MUTATED" "CCDC28B WILD-TYPE" "CCDC28B WILD-TYPE" "CCDC28B WILD-TYPE" 
       TCGA-US-A77J 
"CCDC28B WILD-TYPE" 
[1] "hr=" "1.6"
D153V2, continuous
                   vv
clus                STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  CCDC28B MUTATED          1        1         2         6         1        0
  CCDC28B WILD-TYPE        0        3         9        45         1        3
D153V3, multiclass
                   vv
clus                T1+T2 T3+T4
  CCDC28B MUTATED       2     9
  CCDC28B WILD-TYPE     4    57
D153V4, multiclass
       clus
vv      CCDC28B MUTATED CCDC28B WILD-TYPE
  T1+T2               2                 4
  T3+T4               9                57
D153V5, binary
                   cls
clus                 0  1
  CCDC28B MUTATED    5  6
  CCDC28B WILD-TYPE 12 48
[1] "tbl2"
                   cls
clus                [,1] [,2]
  CCDC28B MUTATED      5    6
  CCDC28B WILD-TYPE   12   48
   clus
vv  CCDC28B MUTATED CCDC28B WILD-TYPE
  0               5                12
  1               6                48
                   vv
clus                M0 M1 MX
  CCDC28B MUTATED    4  0  7
  CCDC28B WILD-TYPE 35  3 23
D153V6, multiclass
    clus
vv   CCDC28B MUTATED CCDC28B WILD-TYPE
  M0               4                35
  M1               0                 3
  MX               7                23
D153V7, binary
                   cls
clus                 0  1
  CCDC28B MUTATED    6  5
  CCDC28B WILD-TYPE 30 31
[1] "tbl2"
                   cls
clus                [,1] [,2]
  CCDC28B MUTATED      6    5
  CCDC28B WILD-TYPE   30   31
        clus
vv       CCDC28B MUTATED CCDC28B WILD-TYPE
  FEMALE               6                30
  MALE                 5                31
                   vv
clus                PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  CCDC28B MUTATED                                     9
  CCDC28B WILD-TYPE                                  56
                   vv
clus                PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  CCDC28B MUTATED                                       1
  CCDC28B WILD-TYPE                                     3
                   vv
clus                PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  CCDC28B MUTATED                                                  1
  CCDC28B WILD-TYPE                                                1
D153V8, multiclass
                                                  clus
vv                                                 CCDC28B MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                            9
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                          1
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA               1
                                                  clus
vv                                                 CCDC28B WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                             56
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                            3
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                 1
D153V9, continuous
D153V10, continuous
[1] "Remove cluster labels:" "CCDC28B MUTATED"       
clus
  CCDC28B MUTATED CCDC28B WILD-TYPE 
                1                18 
       TCGA-FB-A4P5        TCGA-FB-A4P6        TCGA-FB-A5VM        TCGA-FB-A78T 
"CCDC28B WILD-TYPE" "CCDC28B WILD-TYPE" "CCDC28B WILD-TYPE" "CCDC28B WILD-TYPE" 
       TCGA-FB-A7DR        TCGA-H8-A6C1        TCGA-IB-7644        TCGA-IB-7649 
"CCDC28B WILD-TYPE" "CCDC28B WILD-TYPE" "CCDC28B WILD-TYPE" "CCDC28B WILD-TYPE" 
       TCGA-IB-7651        TCGA-IB-7885        TCGA-IB-7886        TCGA-IB-7891 
"CCDC28B WILD-TYPE" "CCDC28B WILD-TYPE" "CCDC28B WILD-TYPE" "CCDC28B WILD-TYPE" 
       TCGA-IB-8126        TCGA-IB-8127        TCGA-IB-A5SS        TCGA-IB-A6UG 
"CCDC28B WILD-TYPE" "CCDC28B WILD-TYPE" "CCDC28B WILD-TYPE" "CCDC28B WILD-TYPE" 
       TCGA-LB-A7SX        TCGA-OE-A75W 
"CCDC28B WILD-TYPE" "CCDC28B WILD-TYPE" 
                   vv
clus                R0 R1 RX
  CCDC28B MUTATED    8  1  0
  CCDC28B WILD-TYPE 34 23  2
D153V11, multiclass
    clus
vv   CCDC28B MUTATED CCDC28B WILD-TYPE
  R0               8                34
  R1               1                23
  RX               0                 2
D153V12, continuous

Clustering(154) Variable = AJAP1 MUTATION ANALYSIS
D154V1, survival
                 sevent
clus2              0  1
  AJAP1 MUTATED    5  7
  AJAP1 WILD-TYPE 35 22
  AJAP1 MUTATED AJAP1 WILD-TYPE 
             12              57 
  AJAP1 MUTATED AJAP1 WILD-TYPE 
              7              22 
$`AJAP1 MUTATED`
TCGA-F2-6879 TCGA-FB-A4P5 TCGA-H6-8124 TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-A4BH 
       10.98         0.13        12.89         0.26         0.62         6.38 
TCGA-IB-7649 TCGA-IB-7651 TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-7893 TCGA-US-A779 
       15.35        19.82        19.66        16.04         3.85        16.80 

$`AJAP1 WILD-TYPE`
TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H TCGA-FB-A4P6 
        9.70        11.84         7.10         5.03        19.27        11.93 
TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR TCGA-FZ-5920 TCGA-FZ-5922 
       12.66         2.47         0.03         5.46         2.01        36.20 
TCGA-FZ-5923 TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-7919 
       20.81         7.66        13.02         7.89         0.92         0.66 
TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-8002 TCGA-HZ-8003 
        0.13         0.26        12.13        11.87         0.79         0.69 
TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G 
        3.95         0.92         0.53         0.16         2.99         0.76 
TCGA-HZ-A49H TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 
        0.95         1.51        11.41        49.38         4.77        21.90 
TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 
       15.65        27.98         4.04         3.62        43.79        15.81 
TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ 
       15.98         0.56        17.16        10.82         9.86         7.20 
TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W TCGA-PZ-A5RE 
       15.12         0.26         1.35         4.18         3.62         8.12 
TCGA-Q3-A5QY TCGA-US-A77E TCGA-US-A77J 
       13.68        14.14        18.67 

  AJAP1 MUTATED AJAP1 WILD-TYPE 
           0.13            0.03 
  AJAP1 MUTATED AJAP1 WILD-TYPE 
          19.82           49.38 
  AJAP1 MUTATED AJAP1 WILD-TYPE 
         11.935           7.200 
[1] "0.1 - 19.8 (11.9)" "0.0 - 49.4 (7.2)" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
  "AJAP1 MUTATED" "AJAP1 WILD-TYPE" "AJAP1 WILD-TYPE" "AJAP1 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"AJAP1 WILD-TYPE" "AJAP1 WILD-TYPE"   "AJAP1 MUTATED" "AJAP1 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"AJAP1 WILD-TYPE" "AJAP1 WILD-TYPE" "AJAP1 WILD-TYPE" "AJAP1 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"AJAP1 WILD-TYPE" "AJAP1 WILD-TYPE" "AJAP1 WILD-TYPE"   "AJAP1 MUTATED" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"AJAP1 WILD-TYPE" "AJAP1 WILD-TYPE" "AJAP1 WILD-TYPE" "AJAP1 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"AJAP1 WILD-TYPE" "AJAP1 WILD-TYPE" "AJAP1 WILD-TYPE" "AJAP1 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"AJAP1 WILD-TYPE"   "AJAP1 MUTATED"   "AJAP1 MUTATED" "AJAP1 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"AJAP1 WILD-TYPE" "AJAP1 WILD-TYPE" "AJAP1 WILD-TYPE" "AJAP1 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"AJAP1 WILD-TYPE" "AJAP1 WILD-TYPE" "AJAP1 WILD-TYPE" "AJAP1 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
  "AJAP1 MUTATED" "AJAP1 WILD-TYPE" "AJAP1 WILD-TYPE" "AJAP1 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"AJAP1 WILD-TYPE" "AJAP1 WILD-TYPE"   "AJAP1 MUTATED"   "AJAP1 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"AJAP1 WILD-TYPE" "AJAP1 WILD-TYPE" "AJAP1 WILD-TYPE" "AJAP1 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"AJAP1 WILD-TYPE" "AJAP1 WILD-TYPE"   "AJAP1 MUTATED"   "AJAP1 MUTATED" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
  "AJAP1 MUTATED" "AJAP1 WILD-TYPE" "AJAP1 WILD-TYPE" "AJAP1 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"AJAP1 WILD-TYPE" "AJAP1 WILD-TYPE" "AJAP1 WILD-TYPE" "AJAP1 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"AJAP1 WILD-TYPE" "AJAP1 WILD-TYPE" "AJAP1 WILD-TYPE" "AJAP1 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"AJAP1 WILD-TYPE" "AJAP1 WILD-TYPE"   "AJAP1 MUTATED" "AJAP1 WILD-TYPE" 
     TCGA-US-A77J 
"AJAP1 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
  "AJAP1 MUTATED" "AJAP1 WILD-TYPE" "AJAP1 WILD-TYPE" "AJAP1 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"AJAP1 WILD-TYPE" "AJAP1 WILD-TYPE"   "AJAP1 MUTATED" "AJAP1 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"AJAP1 WILD-TYPE" "AJAP1 WILD-TYPE" "AJAP1 WILD-TYPE" "AJAP1 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"AJAP1 WILD-TYPE" "AJAP1 WILD-TYPE" "AJAP1 WILD-TYPE"   "AJAP1 MUTATED" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"AJAP1 WILD-TYPE" "AJAP1 WILD-TYPE" "AJAP1 WILD-TYPE" "AJAP1 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"AJAP1 WILD-TYPE" "AJAP1 WILD-TYPE" "AJAP1 WILD-TYPE" "AJAP1 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"AJAP1 WILD-TYPE"   "AJAP1 MUTATED"   "AJAP1 MUTATED" "AJAP1 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"AJAP1 WILD-TYPE" "AJAP1 WILD-TYPE" "AJAP1 WILD-TYPE" "AJAP1 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"AJAP1 WILD-TYPE" "AJAP1 WILD-TYPE" "AJAP1 WILD-TYPE" "AJAP1 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
  "AJAP1 MUTATED" "AJAP1 WILD-TYPE" "AJAP1 WILD-TYPE" "AJAP1 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"AJAP1 WILD-TYPE" "AJAP1 WILD-TYPE"   "AJAP1 MUTATED"   "AJAP1 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"AJAP1 WILD-TYPE" "AJAP1 WILD-TYPE" "AJAP1 WILD-TYPE" "AJAP1 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"AJAP1 WILD-TYPE" "AJAP1 WILD-TYPE"   "AJAP1 MUTATED"   "AJAP1 MUTATED" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
  "AJAP1 MUTATED" "AJAP1 WILD-TYPE" "AJAP1 WILD-TYPE" "AJAP1 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"AJAP1 WILD-TYPE" "AJAP1 WILD-TYPE" "AJAP1 WILD-TYPE" "AJAP1 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"AJAP1 WILD-TYPE" "AJAP1 WILD-TYPE" "AJAP1 WILD-TYPE" "AJAP1 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"AJAP1 WILD-TYPE" "AJAP1 WILD-TYPE"   "AJAP1 MUTATED" "AJAP1 WILD-TYPE" 
     TCGA-US-A77J 
"AJAP1 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
  "AJAP1 MUTATED" "AJAP1 WILD-TYPE" "AJAP1 WILD-TYPE" "AJAP1 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"AJAP1 WILD-TYPE" "AJAP1 WILD-TYPE"   "AJAP1 MUTATED" "AJAP1 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"AJAP1 WILD-TYPE" "AJAP1 WILD-TYPE" "AJAP1 WILD-TYPE" "AJAP1 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"AJAP1 WILD-TYPE" "AJAP1 WILD-TYPE" "AJAP1 WILD-TYPE"   "AJAP1 MUTATED" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"AJAP1 WILD-TYPE" "AJAP1 WILD-TYPE" "AJAP1 WILD-TYPE" "AJAP1 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"AJAP1 WILD-TYPE" "AJAP1 WILD-TYPE" "AJAP1 WILD-TYPE" "AJAP1 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"AJAP1 WILD-TYPE"   "AJAP1 MUTATED"   "AJAP1 MUTATED" "AJAP1 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"AJAP1 WILD-TYPE" "AJAP1 WILD-TYPE" "AJAP1 WILD-TYPE" "AJAP1 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"AJAP1 WILD-TYPE" "AJAP1 WILD-TYPE" "AJAP1 WILD-TYPE" "AJAP1 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
  "AJAP1 MUTATED" "AJAP1 WILD-TYPE" "AJAP1 WILD-TYPE" "AJAP1 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"AJAP1 WILD-TYPE" "AJAP1 WILD-TYPE"   "AJAP1 MUTATED"   "AJAP1 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"AJAP1 WILD-TYPE" "AJAP1 WILD-TYPE" "AJAP1 WILD-TYPE" "AJAP1 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"AJAP1 WILD-TYPE" "AJAP1 WILD-TYPE"   "AJAP1 MUTATED"   "AJAP1 MUTATED" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
  "AJAP1 MUTATED" "AJAP1 WILD-TYPE" "AJAP1 WILD-TYPE" "AJAP1 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"AJAP1 WILD-TYPE" "AJAP1 WILD-TYPE" "AJAP1 WILD-TYPE" "AJAP1 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"AJAP1 WILD-TYPE" "AJAP1 WILD-TYPE" "AJAP1 WILD-TYPE" "AJAP1 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"AJAP1 WILD-TYPE" "AJAP1 WILD-TYPE"   "AJAP1 MUTATED" "AJAP1 WILD-TYPE" 
     TCGA-US-A77J 
"AJAP1 WILD-TYPE" 
[1] "hr=" "1.5"
D154V2, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  AJAP1 MUTATED          0        1         1         9         1        0
  AJAP1 WILD-TYPE        1        3        10        42         1        3
D154V3, multiclass
                 vv
clus              T1+T2 T3+T4
  AJAP1 MUTATED       1    11
  AJAP1 WILD-TYPE     5    55
D154V4, multiclass
       clus
vv      AJAP1 MUTATED AJAP1 WILD-TYPE
  T1+T2             1               5
  T3+T4            11              55
D154V5, binary
                 cls
clus               0  1
  AJAP1 MUTATED    3  9
  AJAP1 WILD-TYPE 14 45
[1] "tbl2"
                 cls
clus              [,1] [,2]
  AJAP1 MUTATED      3    9
  AJAP1 WILD-TYPE   14   45
   clus
vv  AJAP1 MUTATED AJAP1 WILD-TYPE
  0             3              14
  1             9              45
                 vv
clus              M0 M1 MX
  AJAP1 MUTATED    7  0  5
  AJAP1 WILD-TYPE 32  3 25
D154V6, multiclass
    clus
vv   AJAP1 MUTATED AJAP1 WILD-TYPE
  M0             7              32
  M1             0               3
  MX             5              25
D154V7, binary
                 cls
clus               0  1
  AJAP1 MUTATED    5  7
  AJAP1 WILD-TYPE 31 29
[1] "tbl2"
                 cls
clus              [,1] [,2]
  AJAP1 MUTATED      5    7
  AJAP1 WILD-TYPE   31   29
        clus
vv       AJAP1 MUTATED AJAP1 WILD-TYPE
  FEMALE             5              31
  MALE               7              29
                 vv
clus              PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  AJAP1 MUTATED                                    11
  AJAP1 WILD-TYPE                                  54
                 vv
clus              PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  AJAP1 MUTATED                                       0
  AJAP1 WILD-TYPE                                     4
                 vv
clus              PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  AJAP1 MUTATED                                                  0
  AJAP1 WILD-TYPE                                                2
D154V8, multiclass
                                                  clus
vv                                                 AJAP1 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                         11
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                        0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA             0
                                                  clus
vv                                                 AJAP1 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                           54
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                          4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA               2
D154V9, continuous
D154V10, continuous
                 vv
clus              R0 R1 RX
  AJAP1 MUTATED    9  2  1
  AJAP1 WILD-TYPE 33 22  1
D154V11, multiclass
    clus
vv   AJAP1 MUTATED AJAP1 WILD-TYPE
  R0             9              33
  R1             2              22
  RX             1               1
D154V12, continuous

Clustering(155) Variable = CXXC4 MUTATION ANALYSIS
D155V1, survival
                 sevent
clus2              0  1
  CXXC4 MUTATED    5  4
  CXXC4 WILD-TYPE 35 25
  CXXC4 MUTATED CXXC4 WILD-TYPE 
              9              60 
  CXXC4 MUTATED CXXC4 WILD-TYPE 
              4              25 
$`CXXC4 MUTATED`
TCGA-FB-A4P6 TCGA-H6-A45N TCGA-HZ-7919 TCGA-HZ-7924 TCGA-HZ-8315 TCGA-HZ-A4BK 
       11.93         7.66         0.66        12.13         0.92         1.51 
TCGA-IB-7646 TCGA-IB-7651 TCGA-IB-7886 
        4.77        19.82         4.04 

$`CXXC4 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P5 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR TCGA-FZ-5920 
        0.13        12.66         2.47         0.03         5.46         2.01 
TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 TCGA-H8-A6C1 TCGA-HZ-7289 TCGA-HZ-7918 
       36.20        20.81        12.89        13.02         7.89         0.92 
TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 
        0.13         0.26        11.87         0.26         0.62         0.79 
TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8317 TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G 
        0.69         3.95         0.53         0.16         2.99         0.76 
TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7647 TCGA-IB-7649 
        0.95         6.38        11.41        49.38        21.90        15.35 
TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 
       15.65        27.98         3.62        43.79        15.81        19.66 
TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO 
       16.04         3.85        15.98         0.56        17.16        10.82 
TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX 
        9.86         7.20        15.12         0.26         1.35         4.18 
TCGA-OE-A75W TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
        3.62         8.12        13.68        16.80        14.14        18.67 

  CXXC4 MUTATED CXXC4 WILD-TYPE 
           0.66            0.03 
  CXXC4 MUTATED CXXC4 WILD-TYPE 
          19.82           49.38 
  CXXC4 MUTATED CXXC4 WILD-TYPE 
          4.770           8.005 
[1] "0.7 - 19.8 (4.8)" "0.0 - 49.4 (8.0)"
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"CXXC4 WILD-TYPE" "CXXC4 WILD-TYPE" "CXXC4 WILD-TYPE" "CXXC4 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"CXXC4 WILD-TYPE" "CXXC4 WILD-TYPE" "CXXC4 WILD-TYPE"   "CXXC4 MUTATED" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"CXXC4 WILD-TYPE" "CXXC4 WILD-TYPE" "CXXC4 WILD-TYPE" "CXXC4 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"CXXC4 WILD-TYPE" "CXXC4 WILD-TYPE" "CXXC4 WILD-TYPE" "CXXC4 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
  "CXXC4 MUTATED" "CXXC4 WILD-TYPE" "CXXC4 WILD-TYPE" "CXXC4 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
  "CXXC4 MUTATED" "CXXC4 WILD-TYPE" "CXXC4 WILD-TYPE"   "CXXC4 MUTATED" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"CXXC4 WILD-TYPE" "CXXC4 WILD-TYPE" "CXXC4 WILD-TYPE" "CXXC4 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"CXXC4 WILD-TYPE" "CXXC4 WILD-TYPE"   "CXXC4 MUTATED" "CXXC4 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"CXXC4 WILD-TYPE" "CXXC4 WILD-TYPE" "CXXC4 WILD-TYPE" "CXXC4 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"CXXC4 WILD-TYPE"   "CXXC4 MUTATED" "CXXC4 WILD-TYPE" "CXXC4 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
  "CXXC4 MUTATED" "CXXC4 WILD-TYPE" "CXXC4 WILD-TYPE"   "CXXC4 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"CXXC4 WILD-TYPE" "CXXC4 WILD-TYPE"   "CXXC4 MUTATED" "CXXC4 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"CXXC4 WILD-TYPE" "CXXC4 WILD-TYPE" "CXXC4 WILD-TYPE" "CXXC4 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"CXXC4 WILD-TYPE" "CXXC4 WILD-TYPE" "CXXC4 WILD-TYPE" "CXXC4 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"CXXC4 WILD-TYPE" "CXXC4 WILD-TYPE" "CXXC4 WILD-TYPE" "CXXC4 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"CXXC4 WILD-TYPE" "CXXC4 WILD-TYPE" "CXXC4 WILD-TYPE" "CXXC4 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"CXXC4 WILD-TYPE" "CXXC4 WILD-TYPE" "CXXC4 WILD-TYPE" "CXXC4 WILD-TYPE" 
     TCGA-US-A77J 
"CXXC4 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"CXXC4 WILD-TYPE" "CXXC4 WILD-TYPE" "CXXC4 WILD-TYPE" "CXXC4 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"CXXC4 WILD-TYPE" "CXXC4 WILD-TYPE" "CXXC4 WILD-TYPE"   "CXXC4 MUTATED" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"CXXC4 WILD-TYPE" "CXXC4 WILD-TYPE" "CXXC4 WILD-TYPE" "CXXC4 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"CXXC4 WILD-TYPE" "CXXC4 WILD-TYPE" "CXXC4 WILD-TYPE" "CXXC4 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
  "CXXC4 MUTATED" "CXXC4 WILD-TYPE" "CXXC4 WILD-TYPE" "CXXC4 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
  "CXXC4 MUTATED" "CXXC4 WILD-TYPE" "CXXC4 WILD-TYPE"   "CXXC4 MUTATED" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"CXXC4 WILD-TYPE" "CXXC4 WILD-TYPE" "CXXC4 WILD-TYPE" "CXXC4 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"CXXC4 WILD-TYPE" "CXXC4 WILD-TYPE"   "CXXC4 MUTATED" "CXXC4 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"CXXC4 WILD-TYPE" "CXXC4 WILD-TYPE" "CXXC4 WILD-TYPE" "CXXC4 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"CXXC4 WILD-TYPE"   "CXXC4 MUTATED" "CXXC4 WILD-TYPE" "CXXC4 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
  "CXXC4 MUTATED" "CXXC4 WILD-TYPE" "CXXC4 WILD-TYPE"   "CXXC4 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"CXXC4 WILD-TYPE" "CXXC4 WILD-TYPE"   "CXXC4 MUTATED" "CXXC4 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"CXXC4 WILD-TYPE" "CXXC4 WILD-TYPE" "CXXC4 WILD-TYPE" "CXXC4 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"CXXC4 WILD-TYPE" "CXXC4 WILD-TYPE" "CXXC4 WILD-TYPE" "CXXC4 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"CXXC4 WILD-TYPE" "CXXC4 WILD-TYPE" "CXXC4 WILD-TYPE" "CXXC4 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"CXXC4 WILD-TYPE" "CXXC4 WILD-TYPE" "CXXC4 WILD-TYPE" "CXXC4 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"CXXC4 WILD-TYPE" "CXXC4 WILD-TYPE" "CXXC4 WILD-TYPE" "CXXC4 WILD-TYPE" 
     TCGA-US-A77J 
"CXXC4 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"CXXC4 WILD-TYPE" "CXXC4 WILD-TYPE" "CXXC4 WILD-TYPE" "CXXC4 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"CXXC4 WILD-TYPE" "CXXC4 WILD-TYPE" "CXXC4 WILD-TYPE"   "CXXC4 MUTATED" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"CXXC4 WILD-TYPE" "CXXC4 WILD-TYPE" "CXXC4 WILD-TYPE" "CXXC4 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"CXXC4 WILD-TYPE" "CXXC4 WILD-TYPE" "CXXC4 WILD-TYPE" "CXXC4 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
  "CXXC4 MUTATED" "CXXC4 WILD-TYPE" "CXXC4 WILD-TYPE" "CXXC4 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
  "CXXC4 MUTATED" "CXXC4 WILD-TYPE" "CXXC4 WILD-TYPE"   "CXXC4 MUTATED" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"CXXC4 WILD-TYPE" "CXXC4 WILD-TYPE" "CXXC4 WILD-TYPE" "CXXC4 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"CXXC4 WILD-TYPE" "CXXC4 WILD-TYPE"   "CXXC4 MUTATED" "CXXC4 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"CXXC4 WILD-TYPE" "CXXC4 WILD-TYPE" "CXXC4 WILD-TYPE" "CXXC4 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"CXXC4 WILD-TYPE"   "CXXC4 MUTATED" "CXXC4 WILD-TYPE" "CXXC4 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
  "CXXC4 MUTATED" "CXXC4 WILD-TYPE" "CXXC4 WILD-TYPE"   "CXXC4 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"CXXC4 WILD-TYPE" "CXXC4 WILD-TYPE"   "CXXC4 MUTATED" "CXXC4 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"CXXC4 WILD-TYPE" "CXXC4 WILD-TYPE" "CXXC4 WILD-TYPE" "CXXC4 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"CXXC4 WILD-TYPE" "CXXC4 WILD-TYPE" "CXXC4 WILD-TYPE" "CXXC4 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"CXXC4 WILD-TYPE" "CXXC4 WILD-TYPE" "CXXC4 WILD-TYPE" "CXXC4 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"CXXC4 WILD-TYPE" "CXXC4 WILD-TYPE" "CXXC4 WILD-TYPE" "CXXC4 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"CXXC4 WILD-TYPE" "CXXC4 WILD-TYPE" "CXXC4 WILD-TYPE" "CXXC4 WILD-TYPE" 
     TCGA-US-A77J 
"CXXC4 WILD-TYPE" 
[1] "hr=" "1.7"
D155V2, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  CXXC4 MUTATED          0        0         2         7         0        0
  CXXC4 WILD-TYPE        1        4         9        44         2        3
D155V3, multiclass
                 vv
clus              T1+T2 T3+T4
  CXXC4 MUTATED       0     9
  CXXC4 WILD-TYPE     6    57
D155V4, multiclass
       clus
vv      CXXC4 MUTATED CXXC4 WILD-TYPE
  T1+T2             0               6
  T3+T4             9              57
D155V5, binary
                 cls
clus               0  1
  CXXC4 MUTATED    2  7
  CXXC4 WILD-TYPE 15 47
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CXXC4 MUTATED      2    7
  CXXC4 WILD-TYPE   15   47
   clus
vv  CXXC4 MUTATED CXXC4 WILD-TYPE
  0             2              15
  1             7              47
                 vv
clus              M0 M1 MX
  CXXC4 MUTATED    4  0  5
  CXXC4 WILD-TYPE 35  3 25
D155V6, multiclass
    clus
vv   CXXC4 MUTATED CXXC4 WILD-TYPE
  M0             4              35
  M1             0               3
  MX             5              25
D155V7, binary
                 cls
clus               0  1
  CXXC4 MUTATED    5  4
  CXXC4 WILD-TYPE 31 32
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CXXC4 MUTATED      5    4
  CXXC4 WILD-TYPE   31   32
        clus
vv       CXXC4 MUTATED CXXC4 WILD-TYPE
  FEMALE             5              31
  MALE               4              32
                 vv
clus              PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  CXXC4 MUTATED                                     7
  CXXC4 WILD-TYPE                                  58
                 vv
clus              PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  CXXC4 MUTATED                                       2
  CXXC4 WILD-TYPE                                     2
                 vv
clus              PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  CXXC4 MUTATED                                                  0
  CXXC4 WILD-TYPE                                                2
D155V8, multiclass
                                                  clus
vv                                                 CXXC4 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                          7
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                        2
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA             0
                                                  clus
vv                                                 CXXC4 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                           58
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                          2
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA               2
D155V9, continuous
D155V10, continuous
                 vv
clus              R0 R1 RX
  CXXC4 MUTATED    2  5  0
  CXXC4 WILD-TYPE 40 19  2
D155V11, multiclass
    clus
vv   CXXC4 MUTATED CXXC4 WILD-TYPE
  R0             2              40
  R1             5              19
  RX             0               2
D155V12, continuous

Clustering(156) Variable = NAPSA MUTATION ANALYSIS
D156V1, survival
                 sevent
clus2              0  1
  NAPSA MUTATED    5  3
  NAPSA WILD-TYPE 35 26
  NAPSA MUTATED NAPSA WILD-TYPE 
              8              61 
  NAPSA MUTATED NAPSA WILD-TYPE 
              3              26 
$`NAPSA MUTATED`
TCGA-F2-6880 TCGA-FZ-5922 TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8636 
        9.70        36.20        11.87         0.26         0.62         0.16 
TCGA-IB-7651 TCGA-IB-7888 
       19.82        43.79 

$`NAPSA WILD-TYPE`
TCGA-F2-6879 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H TCGA-FB-A4P5 
       10.98        11.84         7.10         5.03        19.27         0.13 
TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR TCGA-FZ-5920 
       11.93        12.66         2.47         0.03         5.46         2.01 
TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7289 TCGA-HZ-7918 
       20.81        12.89         7.66        13.02         7.89         0.92 
TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-8002 TCGA-HZ-8003 
        0.66         0.13         0.26        12.13         0.79         0.69 
TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H 
        3.95         0.92         0.53         2.99         0.76         0.95 
TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 
        6.38         1.51        11.41        49.38         4.77        21.90 
TCGA-IB-7649 TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7889 
       15.35        15.65        27.98         4.04         3.62        15.81 
TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-8127 
       19.66        16.04         3.85        15.98         0.56        17.16 
TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG 
       10.82         9.86         7.20        15.12         0.26         1.35 
TCGA-LB-A7SX TCGA-OE-A75W TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E 
        4.18         3.62         8.12        13.68        16.80        14.14 
TCGA-US-A77J 
       18.67 

  NAPSA MUTATED NAPSA WILD-TYPE 
           0.16            0.03 
  NAPSA MUTATED NAPSA WILD-TYPE 
          43.79           49.38 
  NAPSA MUTATED NAPSA WILD-TYPE 
         10.785           7.200 
[1] "0.2 - 43.8 (10.8)" "0.0 - 49.4 (7.2)" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"NAPSA WILD-TYPE"   "NAPSA MUTATED" "NAPSA WILD-TYPE" "NAPSA WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"NAPSA WILD-TYPE" "NAPSA WILD-TYPE" "NAPSA WILD-TYPE" "NAPSA WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"NAPSA WILD-TYPE" "NAPSA WILD-TYPE" "NAPSA WILD-TYPE" "NAPSA WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"NAPSA WILD-TYPE"   "NAPSA MUTATED" "NAPSA WILD-TYPE" "NAPSA WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"NAPSA WILD-TYPE" "NAPSA WILD-TYPE" "NAPSA WILD-TYPE" "NAPSA WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"NAPSA WILD-TYPE" "NAPSA WILD-TYPE" "NAPSA WILD-TYPE" "NAPSA WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
  "NAPSA MUTATED"   "NAPSA MUTATED"   "NAPSA MUTATED" "NAPSA WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"NAPSA WILD-TYPE" "NAPSA WILD-TYPE" "NAPSA WILD-TYPE" "NAPSA WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
  "NAPSA MUTATED" "NAPSA WILD-TYPE" "NAPSA WILD-TYPE" "NAPSA WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"NAPSA WILD-TYPE" "NAPSA WILD-TYPE" "NAPSA WILD-TYPE" "NAPSA WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"NAPSA WILD-TYPE" "NAPSA WILD-TYPE" "NAPSA WILD-TYPE"   "NAPSA MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"NAPSA WILD-TYPE" "NAPSA WILD-TYPE" "NAPSA WILD-TYPE" "NAPSA WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
  "NAPSA MUTATED" "NAPSA WILD-TYPE" "NAPSA WILD-TYPE" "NAPSA WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"NAPSA WILD-TYPE" "NAPSA WILD-TYPE" "NAPSA WILD-TYPE" "NAPSA WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"NAPSA WILD-TYPE" "NAPSA WILD-TYPE" "NAPSA WILD-TYPE" "NAPSA WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"NAPSA WILD-TYPE" "NAPSA WILD-TYPE" "NAPSA WILD-TYPE" "NAPSA WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"NAPSA WILD-TYPE" "NAPSA WILD-TYPE" "NAPSA WILD-TYPE" "NAPSA WILD-TYPE" 
     TCGA-US-A77J 
"NAPSA WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"NAPSA WILD-TYPE"   "NAPSA MUTATED" "NAPSA WILD-TYPE" "NAPSA WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"NAPSA WILD-TYPE" "NAPSA WILD-TYPE" "NAPSA WILD-TYPE" "NAPSA WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"NAPSA WILD-TYPE" "NAPSA WILD-TYPE" "NAPSA WILD-TYPE" "NAPSA WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"NAPSA WILD-TYPE"   "NAPSA MUTATED" "NAPSA WILD-TYPE" "NAPSA WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"NAPSA WILD-TYPE" "NAPSA WILD-TYPE" "NAPSA WILD-TYPE" "NAPSA WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"NAPSA WILD-TYPE" "NAPSA WILD-TYPE" "NAPSA WILD-TYPE" "NAPSA WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
  "NAPSA MUTATED"   "NAPSA MUTATED"   "NAPSA MUTATED" "NAPSA WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"NAPSA WILD-TYPE" "NAPSA WILD-TYPE" "NAPSA WILD-TYPE" "NAPSA WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
  "NAPSA MUTATED" "NAPSA WILD-TYPE" "NAPSA WILD-TYPE" "NAPSA WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"NAPSA WILD-TYPE" "NAPSA WILD-TYPE" "NAPSA WILD-TYPE" "NAPSA WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"NAPSA WILD-TYPE" "NAPSA WILD-TYPE" "NAPSA WILD-TYPE"   "NAPSA MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"NAPSA WILD-TYPE" "NAPSA WILD-TYPE" "NAPSA WILD-TYPE" "NAPSA WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
  "NAPSA MUTATED" "NAPSA WILD-TYPE" "NAPSA WILD-TYPE" "NAPSA WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"NAPSA WILD-TYPE" "NAPSA WILD-TYPE" "NAPSA WILD-TYPE" "NAPSA WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"NAPSA WILD-TYPE" "NAPSA WILD-TYPE" "NAPSA WILD-TYPE" "NAPSA WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"NAPSA WILD-TYPE" "NAPSA WILD-TYPE" "NAPSA WILD-TYPE" "NAPSA WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"NAPSA WILD-TYPE" "NAPSA WILD-TYPE" "NAPSA WILD-TYPE" "NAPSA WILD-TYPE" 
     TCGA-US-A77J 
"NAPSA WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"NAPSA WILD-TYPE"   "NAPSA MUTATED" "NAPSA WILD-TYPE" "NAPSA WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"NAPSA WILD-TYPE" "NAPSA WILD-TYPE" "NAPSA WILD-TYPE" "NAPSA WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"NAPSA WILD-TYPE" "NAPSA WILD-TYPE" "NAPSA WILD-TYPE" "NAPSA WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"NAPSA WILD-TYPE"   "NAPSA MUTATED" "NAPSA WILD-TYPE" "NAPSA WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"NAPSA WILD-TYPE" "NAPSA WILD-TYPE" "NAPSA WILD-TYPE" "NAPSA WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"NAPSA WILD-TYPE" "NAPSA WILD-TYPE" "NAPSA WILD-TYPE" "NAPSA WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
  "NAPSA MUTATED"   "NAPSA MUTATED"   "NAPSA MUTATED" "NAPSA WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"NAPSA WILD-TYPE" "NAPSA WILD-TYPE" "NAPSA WILD-TYPE" "NAPSA WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
  "NAPSA MUTATED" "NAPSA WILD-TYPE" "NAPSA WILD-TYPE" "NAPSA WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"NAPSA WILD-TYPE" "NAPSA WILD-TYPE" "NAPSA WILD-TYPE" "NAPSA WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"NAPSA WILD-TYPE" "NAPSA WILD-TYPE" "NAPSA WILD-TYPE"   "NAPSA MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"NAPSA WILD-TYPE" "NAPSA WILD-TYPE" "NAPSA WILD-TYPE" "NAPSA WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
  "NAPSA MUTATED" "NAPSA WILD-TYPE" "NAPSA WILD-TYPE" "NAPSA WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"NAPSA WILD-TYPE" "NAPSA WILD-TYPE" "NAPSA WILD-TYPE" "NAPSA WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"NAPSA WILD-TYPE" "NAPSA WILD-TYPE" "NAPSA WILD-TYPE" "NAPSA WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"NAPSA WILD-TYPE" "NAPSA WILD-TYPE" "NAPSA WILD-TYPE" "NAPSA WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"NAPSA WILD-TYPE" "NAPSA WILD-TYPE" "NAPSA WILD-TYPE" "NAPSA WILD-TYPE" 
     TCGA-US-A77J 
"NAPSA WILD-TYPE" 
[1] "hr=" "2.5"
D156V2, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  NAPSA MUTATED          0        0         2         4         1        1
  NAPSA WILD-TYPE        1        4         9        47         1        2
D156V3, multiclass
                 vv
clus              T1+T2 T3+T4
  NAPSA MUTATED       0     8
  NAPSA WILD-TYPE     6    58
D156V4, multiclass
       clus
vv      NAPSA MUTATED NAPSA WILD-TYPE
  T1+T2             0               6
  T3+T4             8              58
D156V5, binary
                 cls
clus               0  1
  NAPSA MUTATED    4  4
  NAPSA WILD-TYPE 13 50
[1] "tbl2"
                 cls
clus              [,1] [,2]
  NAPSA MUTATED      4    4
  NAPSA WILD-TYPE   13   50
   clus
vv  NAPSA MUTATED NAPSA WILD-TYPE
  0             4              13
  1             4              50
                 vv
clus              M0 M1 MX
  NAPSA MUTATED    4  1  3
  NAPSA WILD-TYPE 35  2 27
D156V6, multiclass
    clus
vv   NAPSA MUTATED NAPSA WILD-TYPE
  M0             4              35
  M1             1               2
  MX             3              27
D156V7, binary
                 cls
clus               0  1
  NAPSA MUTATED    3  5
  NAPSA WILD-TYPE 33 31
[1] "tbl2"
                 cls
clus              [,1] [,2]
  NAPSA MUTATED      3    5
  NAPSA WILD-TYPE   33   31
        clus
vv       NAPSA MUTATED NAPSA WILD-TYPE
  FEMALE             3              33
  MALE               5              31
                 vv
clus              PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  NAPSA MUTATED                                     8
  NAPSA WILD-TYPE                                  57
                 vv
clus              PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  NAPSA MUTATED                                       0
  NAPSA WILD-TYPE                                     4
                 vv
clus              PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  NAPSA MUTATED                                                  0
  NAPSA WILD-TYPE                                                2
D156V8, multiclass
                                                  clus
vv                                                 NAPSA MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                          8
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                        0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA             0
                                                  clus
vv                                                 NAPSA WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                           57
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                          4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA               2
D156V9, continuous
[1] "Remove cluster labels:" "NAPSA MUTATED"         
clus
  NAPSA MUTATED NAPSA WILD-TYPE 
              2              20 
     TCGA-FB-A4P5      TCGA-FB-A4P6      TCGA-FB-A5VM      TCGA-FB-A78T 
"NAPSA WILD-TYPE" "NAPSA WILD-TYPE" "NAPSA WILD-TYPE" "NAPSA WILD-TYPE" 
     TCGA-FB-A7DR      TCGA-H6-8124      TCGA-H6-A45N      TCGA-H8-A6C1 
"NAPSA WILD-TYPE" "NAPSA WILD-TYPE" "NAPSA WILD-TYPE" "NAPSA WILD-TYPE" 
     TCGA-IB-7644      TCGA-IB-7649      TCGA-IB-7885      TCGA-IB-7886 
"NAPSA WILD-TYPE" "NAPSA WILD-TYPE" "NAPSA WILD-TYPE" "NAPSA WILD-TYPE" 
     TCGA-IB-7887      TCGA-IB-7891      TCGA-IB-8126      TCGA-IB-8127 
"NAPSA WILD-TYPE" "NAPSA WILD-TYPE" "NAPSA WILD-TYPE" "NAPSA WILD-TYPE" 
     TCGA-IB-A5SS      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"NAPSA WILD-TYPE" "NAPSA WILD-TYPE" "NAPSA WILD-TYPE" "NAPSA WILD-TYPE" 
D156V10, continuous
[1] "Remove cluster labels:" "NAPSA MUTATED"         
clus
  NAPSA MUTATED NAPSA WILD-TYPE 
              1              18 
     TCGA-FB-A4P5      TCGA-FB-A4P6      TCGA-FB-A5VM      TCGA-FB-A78T 
"NAPSA WILD-TYPE" "NAPSA WILD-TYPE" "NAPSA WILD-TYPE" "NAPSA WILD-TYPE" 
     TCGA-FB-A7DR      TCGA-H6-8124      TCGA-H8-A6C1      TCGA-IB-7644 
"NAPSA WILD-TYPE" "NAPSA WILD-TYPE" "NAPSA WILD-TYPE" "NAPSA WILD-TYPE" 
     TCGA-IB-7649      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7891 
"NAPSA WILD-TYPE" "NAPSA WILD-TYPE" "NAPSA WILD-TYPE" "NAPSA WILD-TYPE" 
     TCGA-IB-8126      TCGA-IB-8127      TCGA-IB-A5SS      TCGA-IB-A6UG 
"NAPSA WILD-TYPE" "NAPSA WILD-TYPE" "NAPSA WILD-TYPE" "NAPSA WILD-TYPE" 
     TCGA-LB-A7SX      TCGA-OE-A75W 
"NAPSA WILD-TYPE" "NAPSA WILD-TYPE" 
                 vv
clus              R0 R1 RX
  NAPSA MUTATED    6  1  1
  NAPSA WILD-TYPE 36 23  1
D156V11, multiclass
    clus
vv   NAPSA MUTATED NAPSA WILD-TYPE
  R0             6              36
  R1             1              23
  RX             1               1
D156V12, continuous

Clustering(157) Variable = SMAD4 MUTATION ANALYSIS
D157V1, survival
                 sevent
clus2              0  1
  SMAD4 MUTATED    8  6
  SMAD4 WILD-TYPE 32 23
  SMAD4 MUTATED SMAD4 WILD-TYPE 
             14              55 
  SMAD4 MUTATED SMAD4 WILD-TYPE 
              6              23 
$`SMAD4 MUTATED`
TCGA-FB-A78T TCGA-FZ-5923 TCGA-HZ-7919 TCGA-HZ-7925 TCGA-HZ-8315 TCGA-HZ-8317 
        0.03        20.81         0.66        11.87         0.92         0.53 
TCGA-IB-7644 TCGA-IB-7651 TCGA-IB-7886 TCGA-IB-7889 TCGA-IB-7891 TCGA-IB-A5SP 
       11.41        19.82         4.04        15.81        16.04         9.86 
TCGA-IB-A5SS TCGA-PZ-A5RE 
       15.12         8.12 

$`SMAD4 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P5 TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A7DR TCGA-FZ-5920 
        0.13        11.93        12.66         2.47         5.46         2.01 
TCGA-FZ-5922 TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7289 TCGA-HZ-7918 
       36.20        12.89         7.66        13.02         7.89         0.92 
TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 
        0.13         0.26        12.13         0.26         0.62         0.79 
TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H 
        0.69         3.95         0.16         2.99         0.76         0.95 
TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 
        6.38         1.51        49.38         4.77        21.90        15.35 
TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7890 TCGA-IB-7893 
       15.65        27.98         3.62        43.79        19.66         3.85 
TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SQ TCGA-IB-A5ST 
       15.98         0.56        17.16        10.82         7.20         0.26 
TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E 
        1.35         4.18         3.62        13.68        16.80        14.14 
TCGA-US-A77J 
       18.67 

  SMAD4 MUTATED SMAD4 WILD-TYPE 
           0.03            0.13 
  SMAD4 MUTATED SMAD4 WILD-TYPE 
          20.81           49.38 
  SMAD4 MUTATED SMAD4 WILD-TYPE 
         10.635           7.100 
[1] "0.0 - 20.8 (10.6)" "0.1 - 49.4 (7.1)" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE"   "SMAD4 MUTATED" "SMAD4 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE"   "SMAD4 MUTATED" "SMAD4 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
  "SMAD4 MUTATED" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
  "SMAD4 MUTATED" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE"   "SMAD4 MUTATED"   "SMAD4 MUTATED" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE"   "SMAD4 MUTATED" "SMAD4 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE"   "SMAD4 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE"   "SMAD4 MUTATED" "SMAD4 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"SMAD4 WILD-TYPE"   "SMAD4 MUTATED" "SMAD4 WILD-TYPE"   "SMAD4 MUTATED" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"SMAD4 WILD-TYPE"   "SMAD4 MUTATED" "SMAD4 WILD-TYPE"   "SMAD4 MUTATED" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
  "SMAD4 MUTATED" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-US-A77J 
"SMAD4 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE"   "SMAD4 MUTATED" "SMAD4 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE"   "SMAD4 MUTATED" "SMAD4 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
  "SMAD4 MUTATED" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
  "SMAD4 MUTATED" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE"   "SMAD4 MUTATED"   "SMAD4 MUTATED" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE"   "SMAD4 MUTATED" "SMAD4 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE"   "SMAD4 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE"   "SMAD4 MUTATED" "SMAD4 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"SMAD4 WILD-TYPE"   "SMAD4 MUTATED" "SMAD4 WILD-TYPE"   "SMAD4 MUTATED" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"SMAD4 WILD-TYPE"   "SMAD4 MUTATED" "SMAD4 WILD-TYPE"   "SMAD4 MUTATED" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
  "SMAD4 MUTATED" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-US-A77J 
"SMAD4 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE"   "SMAD4 MUTATED" "SMAD4 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE"   "SMAD4 MUTATED" "SMAD4 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
  "SMAD4 MUTATED" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
  "SMAD4 MUTATED" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE"   "SMAD4 MUTATED"   "SMAD4 MUTATED" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE"   "SMAD4 MUTATED" "SMAD4 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE"   "SMAD4 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE"   "SMAD4 MUTATED" "SMAD4 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"SMAD4 WILD-TYPE"   "SMAD4 MUTATED" "SMAD4 WILD-TYPE"   "SMAD4 MUTATED" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"SMAD4 WILD-TYPE"   "SMAD4 MUTATED" "SMAD4 WILD-TYPE"   "SMAD4 MUTATED" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
  "SMAD4 MUTATED" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-US-A77J 
"SMAD4 WILD-TYPE" 
[1] "hr=" "1.1"
D157V2, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  SMAD4 MUTATED          0        0         2        10         0        2
  SMAD4 WILD-TYPE        1        4         9        41         2        1
D157V3, multiclass
                 vv
clus              T1+T2 T3+T4
  SMAD4 MUTATED       0    14
  SMAD4 WILD-TYPE     6    52
D157V4, multiclass
       clus
vv      SMAD4 MUTATED SMAD4 WILD-TYPE
  T1+T2             0               6
  T3+T4            14              52
D157V5, binary
                 cls
clus               0  1
  SMAD4 MUTATED    2 12
  SMAD4 WILD-TYPE 15 42
[1] "tbl2"
                 cls
clus              [,1] [,2]
  SMAD4 MUTATED      2   12
  SMAD4 WILD-TYPE   15   42
   clus
vv  SMAD4 MUTATED SMAD4 WILD-TYPE
  0             2              15
  1            12              42
                 vv
clus              M0 M1 MX
  SMAD4 MUTATED    8  2  4
  SMAD4 WILD-TYPE 31  1 26
D157V6, multiclass
    clus
vv   SMAD4 MUTATED SMAD4 WILD-TYPE
  M0             8              31
  M1             2               1
  MX             4              26
D157V7, binary
                 cls
clus               0  1
  SMAD4 MUTATED    9  5
  SMAD4 WILD-TYPE 27 31
[1] "tbl2"
                 cls
clus              [,1] [,2]
  SMAD4 MUTATED      9    5
  SMAD4 WILD-TYPE   27   31
        clus
vv       SMAD4 MUTATED SMAD4 WILD-TYPE
  FEMALE             9              27
  MALE               5              31
                 vv
clus              PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  SMAD4 MUTATED                                    14
  SMAD4 WILD-TYPE                                  51
                 vv
clus              PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  SMAD4 MUTATED                                       0
  SMAD4 WILD-TYPE                                     4
                 vv
clus              PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  SMAD4 MUTATED                                                  0
  SMAD4 WILD-TYPE                                                2
D157V8, multiclass
                                                  clus
vv                                                 SMAD4 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                         14
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                        0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA             0
                                                  clus
vv                                                 SMAD4 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                           51
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                          4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA               2
D157V9, continuous
D157V10, continuous
                 vv
clus              R0 R1 RX
  SMAD4 MUTATED    7  6  0
  SMAD4 WILD-TYPE 35 18  2
D157V11, multiclass
    clus
vv   SMAD4 MUTATED SMAD4 WILD-TYPE
  R0             7              35
  R1             6              18
  RX             0               2
D157V12, continuous

Clustering(158) Variable = DDX55 MUTATION ANALYSIS
D158V1, survival
                 sevent
clus2              0  1
  DDX55 MUTATED    8  8
  DDX55 WILD-TYPE 32 21
  DDX55 MUTATED DDX55 WILD-TYPE 
             16              53 
  DDX55 MUTATED DDX55 WILD-TYPE 
              8              21 
$`DDX55 MUTATED`
TCGA-F2-6880 TCGA-F2-7276 TCGA-F2-A44H TCGA-H6-8124 TCGA-H6-A45N TCGA-HZ-7919 
        9.70         7.10        19.27        12.89         7.66         0.66 
TCGA-HZ-8003 TCGA-HZ-8636 TCGA-HZ-A4BH TCGA-IB-7645 TCGA-IB-7651 TCGA-IB-7888 
        0.69         0.16         6.38        49.38        19.82        43.79 
TCGA-IB-7889 TCGA-IB-7890 TCGA-OE-A75W TCGA-US-A77E 
       15.81        19.66         3.62        14.14 

$`DDX55 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-7273 TCGA-F2-A44G TCGA-FB-A4P5 TCGA-FB-A4P6 TCGA-FB-A545 
       10.98        11.84         5.03         0.13        11.93        12.66 
TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR TCGA-FZ-5920 TCGA-FZ-5922 TCGA-FZ-5923 
        2.47         0.03         5.46         2.01        36.20        20.81 
TCGA-H8-A6C1 TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 
       13.02         7.89         0.92         0.13         0.26        12.13 
TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8005 TCGA-HZ-8315 
       11.87         0.26         0.62         0.79         3.95         0.92 
TCGA-HZ-8317 TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BK TCGA-IB-7644 
        0.53         2.99         0.76         0.95         1.51        11.41 
TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7886 
        4.77        21.90        15.35        15.65        27.98         4.04 
TCGA-IB-7887 TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-8127 
        3.62        16.04         3.85        15.98         0.56        17.16 
TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG 
       10.82         9.86         7.20        15.12         0.26         1.35 
TCGA-LB-A7SX TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77J 
        4.18         8.12        13.68        16.80        18.67 

  DDX55 MUTATED DDX55 WILD-TYPE 
           0.16            0.03 
  DDX55 MUTATED DDX55 WILD-TYPE 
          49.38           36.20 
  DDX55 MUTATED DDX55 WILD-TYPE 
         11.295           5.460 
[1] "0.2 - 49.4 (11.3)" "0.0 - 36.2 (5.5)" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"DDX55 WILD-TYPE"   "DDX55 MUTATED" "DDX55 WILD-TYPE"   "DDX55 MUTATED" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"DDX55 WILD-TYPE"   "DDX55 MUTATED" "DDX55 WILD-TYPE" "DDX55 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"DDX55 WILD-TYPE" "DDX55 WILD-TYPE" "DDX55 WILD-TYPE" "DDX55 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"DDX55 WILD-TYPE" "DDX55 WILD-TYPE" "DDX55 WILD-TYPE"   "DDX55 MUTATED" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
  "DDX55 MUTATED" "DDX55 WILD-TYPE" "DDX55 WILD-TYPE" "DDX55 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
  "DDX55 MUTATED" "DDX55 WILD-TYPE" "DDX55 WILD-TYPE" "DDX55 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"DDX55 WILD-TYPE" "DDX55 WILD-TYPE" "DDX55 WILD-TYPE" "DDX55 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
  "DDX55 MUTATED" "DDX55 WILD-TYPE" "DDX55 WILD-TYPE" "DDX55 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
  "DDX55 MUTATED" "DDX55 WILD-TYPE" "DDX55 WILD-TYPE" "DDX55 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
  "DDX55 MUTATED" "DDX55 WILD-TYPE" "DDX55 WILD-TYPE"   "DDX55 MUTATED" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"DDX55 WILD-TYPE" "DDX55 WILD-TYPE" "DDX55 WILD-TYPE"   "DDX55 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"DDX55 WILD-TYPE" "DDX55 WILD-TYPE" "DDX55 WILD-TYPE" "DDX55 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
  "DDX55 MUTATED"   "DDX55 MUTATED"   "DDX55 MUTATED" "DDX55 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"DDX55 WILD-TYPE" "DDX55 WILD-TYPE" "DDX55 WILD-TYPE" "DDX55 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"DDX55 WILD-TYPE" "DDX55 WILD-TYPE" "DDX55 WILD-TYPE" "DDX55 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"DDX55 WILD-TYPE" "DDX55 WILD-TYPE" "DDX55 WILD-TYPE"   "DDX55 MUTATED" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"DDX55 WILD-TYPE" "DDX55 WILD-TYPE" "DDX55 WILD-TYPE"   "DDX55 MUTATED" 
     TCGA-US-A77J 
"DDX55 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"DDX55 WILD-TYPE"   "DDX55 MUTATED" "DDX55 WILD-TYPE"   "DDX55 MUTATED" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"DDX55 WILD-TYPE"   "DDX55 MUTATED" "DDX55 WILD-TYPE" "DDX55 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"DDX55 WILD-TYPE" "DDX55 WILD-TYPE" "DDX55 WILD-TYPE" "DDX55 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"DDX55 WILD-TYPE" "DDX55 WILD-TYPE" "DDX55 WILD-TYPE"   "DDX55 MUTATED" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
  "DDX55 MUTATED" "DDX55 WILD-TYPE" "DDX55 WILD-TYPE" "DDX55 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
  "DDX55 MUTATED" "DDX55 WILD-TYPE" "DDX55 WILD-TYPE" "DDX55 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"DDX55 WILD-TYPE" "DDX55 WILD-TYPE" "DDX55 WILD-TYPE" "DDX55 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
  "DDX55 MUTATED" "DDX55 WILD-TYPE" "DDX55 WILD-TYPE" "DDX55 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
  "DDX55 MUTATED" "DDX55 WILD-TYPE" "DDX55 WILD-TYPE" "DDX55 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
  "DDX55 MUTATED" "DDX55 WILD-TYPE" "DDX55 WILD-TYPE"   "DDX55 MUTATED" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"DDX55 WILD-TYPE" "DDX55 WILD-TYPE" "DDX55 WILD-TYPE"   "DDX55 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"DDX55 WILD-TYPE" "DDX55 WILD-TYPE" "DDX55 WILD-TYPE" "DDX55 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
  "DDX55 MUTATED"   "DDX55 MUTATED"   "DDX55 MUTATED" "DDX55 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"DDX55 WILD-TYPE" "DDX55 WILD-TYPE" "DDX55 WILD-TYPE" "DDX55 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"DDX55 WILD-TYPE" "DDX55 WILD-TYPE" "DDX55 WILD-TYPE" "DDX55 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"DDX55 WILD-TYPE" "DDX55 WILD-TYPE" "DDX55 WILD-TYPE"   "DDX55 MUTATED" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"DDX55 WILD-TYPE" "DDX55 WILD-TYPE" "DDX55 WILD-TYPE"   "DDX55 MUTATED" 
     TCGA-US-A77J 
"DDX55 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"DDX55 WILD-TYPE"   "DDX55 MUTATED" "DDX55 WILD-TYPE"   "DDX55 MUTATED" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"DDX55 WILD-TYPE"   "DDX55 MUTATED" "DDX55 WILD-TYPE" "DDX55 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"DDX55 WILD-TYPE" "DDX55 WILD-TYPE" "DDX55 WILD-TYPE" "DDX55 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"DDX55 WILD-TYPE" "DDX55 WILD-TYPE" "DDX55 WILD-TYPE"   "DDX55 MUTATED" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
  "DDX55 MUTATED" "DDX55 WILD-TYPE" "DDX55 WILD-TYPE" "DDX55 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
  "DDX55 MUTATED" "DDX55 WILD-TYPE" "DDX55 WILD-TYPE" "DDX55 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"DDX55 WILD-TYPE" "DDX55 WILD-TYPE" "DDX55 WILD-TYPE" "DDX55 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
  "DDX55 MUTATED" "DDX55 WILD-TYPE" "DDX55 WILD-TYPE" "DDX55 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
  "DDX55 MUTATED" "DDX55 WILD-TYPE" "DDX55 WILD-TYPE" "DDX55 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
  "DDX55 MUTATED" "DDX55 WILD-TYPE" "DDX55 WILD-TYPE"   "DDX55 MUTATED" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"DDX55 WILD-TYPE" "DDX55 WILD-TYPE" "DDX55 WILD-TYPE"   "DDX55 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"DDX55 WILD-TYPE" "DDX55 WILD-TYPE" "DDX55 WILD-TYPE" "DDX55 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
  "DDX55 MUTATED"   "DDX55 MUTATED"   "DDX55 MUTATED" "DDX55 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"DDX55 WILD-TYPE" "DDX55 WILD-TYPE" "DDX55 WILD-TYPE" "DDX55 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"DDX55 WILD-TYPE" "DDX55 WILD-TYPE" "DDX55 WILD-TYPE" "DDX55 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"DDX55 WILD-TYPE" "DDX55 WILD-TYPE" "DDX55 WILD-TYPE"   "DDX55 MUTATED" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"DDX55 WILD-TYPE" "DDX55 WILD-TYPE" "DDX55 WILD-TYPE"   "DDX55 MUTATED" 
     TCGA-US-A77J 
"DDX55 WILD-TYPE" 
[1] "hr=" "1.9"
D158V2, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  DDX55 MUTATED          0        2         3        11         0        1
  DDX55 WILD-TYPE        1        2         8        40         2        2
D158V3, multiclass
                 vv
clus              T1+T2 T3+T4
  DDX55 MUTATED       2    15
  DDX55 WILD-TYPE     4    51
D158V4, multiclass
       clus
vv      DDX55 MUTATED DDX55 WILD-TYPE
  T1+T2             2               4
  T3+T4            15              51
D158V5, binary
                 cls
clus               0  1
  DDX55 MUTATED    6 11
  DDX55 WILD-TYPE 11 43
[1] "tbl2"
                 cls
clus              [,1] [,2]
  DDX55 MUTATED      6   11
  DDX55 WILD-TYPE   11   43
   clus
vv  DDX55 MUTATED DDX55 WILD-TYPE
  0             6              11
  1            11              43
                 vv
clus              M0 M1 MX
  DDX55 MUTATED   11  1  5
  DDX55 WILD-TYPE 28  2 25
D158V6, multiclass
    clus
vv   DDX55 MUTATED DDX55 WILD-TYPE
  M0            11              28
  M1             1               2
  MX             5              25
D158V7, binary
                 cls
clus               0  1
  DDX55 MUTATED    9  8
  DDX55 WILD-TYPE 27 28
[1] "tbl2"
                 cls
clus              [,1] [,2]
  DDX55 MUTATED      9    8
  DDX55 WILD-TYPE   27   28
        clus
vv       DDX55 MUTATED DDX55 WILD-TYPE
  FEMALE             9              27
  MALE               8              28
                 vv
clus              PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  DDX55 MUTATED                                    16
  DDX55 WILD-TYPE                                  49
                 vv
clus              PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  DDX55 MUTATED                                       1
  DDX55 WILD-TYPE                                     3
                 vv
clus              PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  DDX55 MUTATED                                                  0
  DDX55 WILD-TYPE                                                2
D158V8, multiclass
                                                  clus
vv                                                 DDX55 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                         16
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                        1
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA             0
                                                  clus
vv                                                 DDX55 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                           49
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                          3
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA               2
D158V9, continuous
D158V10, continuous
                 vv
clus              R0 R1 RX
  DDX55 MUTATED   12  4  0
  DDX55 WILD-TYPE 30 20  2
D158V11, multiclass
    clus
vv   DDX55 MUTATED DDX55 WILD-TYPE
  R0            12              30
  R1             4              20
  RX             0               2
D158V12, continuous

Clustering(159) Variable = TMEM41A MUTATION ANALYSIS
D159V1, survival
                   sevent
clus2                0  1
  TMEM41A MUTATED    3  3
  TMEM41A WILD-TYPE 37 26
  TMEM41A MUTATED TMEM41A WILD-TYPE 
                6                63 
  TMEM41A MUTATED TMEM41A WILD-TYPE 
                3                26 
$`TMEM41A MUTATED`
TCGA-FB-A4P5 TCGA-H6-8124 TCGA-HZ-8001 TCGA-HZ-A49G TCGA-IB-7647 TCGA-IB-7651 
        0.13        12.89         0.62         0.76        21.90        19.82 

$`TMEM41A WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR TCGA-FZ-5920 
       11.93        12.66         2.47         0.03         5.46         2.01 
TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7289 TCGA-HZ-7918 
       36.20        20.81         7.66        13.02         7.89         0.92 
TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 
        0.66         0.13         0.26        12.13        11.87         0.26 
TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8636 
        0.79         0.69         3.95         0.92         0.53         0.16 
TCGA-HZ-8638 TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7645 
        2.99         0.95         6.38         1.51        11.41        49.38 
TCGA-IB-7646 TCGA-IB-7649 TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 
        4.77        15.35        15.65        27.98         4.04         3.62 
TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-7897 
       43.79        15.81        19.66        16.04         3.85        15.98 
TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS 
        0.56        17.16        10.82         9.86         7.20        15.12 
TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W TCGA-PZ-A5RE TCGA-Q3-A5QY 
        0.26         1.35         4.18         3.62         8.12        13.68 
TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
       16.80        14.14        18.67 

  TMEM41A MUTATED TMEM41A WILD-TYPE 
             0.13              0.03 
  TMEM41A MUTATED TMEM41A WILD-TYPE 
            21.90             49.38 
  TMEM41A MUTATED TMEM41A WILD-TYPE 
            6.825             7.660 
[1] "0.1 - 21.9 (6.8)" "0.0 - 49.4 (7.7)"
       TCGA-F2-6879        TCGA-F2-6880        TCGA-F2-7273        TCGA-F2-7276 
"TMEM41A WILD-TYPE" "TMEM41A WILD-TYPE" "TMEM41A WILD-TYPE" "TMEM41A WILD-TYPE" 
       TCGA-F2-A44G        TCGA-F2-A44H        TCGA-FB-A4P5        TCGA-FB-A4P6 
"TMEM41A WILD-TYPE" "TMEM41A WILD-TYPE"   "TMEM41A MUTATED" "TMEM41A WILD-TYPE" 
       TCGA-FB-A545        TCGA-FB-A5VM        TCGA-FB-A78T        TCGA-FB-A7DR 
"TMEM41A WILD-TYPE" "TMEM41A WILD-TYPE" "TMEM41A WILD-TYPE" "TMEM41A WILD-TYPE" 
       TCGA-FZ-5920        TCGA-FZ-5922        TCGA-FZ-5923        TCGA-H6-8124 
"TMEM41A WILD-TYPE" "TMEM41A WILD-TYPE" "TMEM41A WILD-TYPE"   "TMEM41A MUTATED" 
       TCGA-H6-A45N        TCGA-H8-A6C1        TCGA-HZ-7289        TCGA-HZ-7918 
"TMEM41A WILD-TYPE" "TMEM41A WILD-TYPE" "TMEM41A WILD-TYPE" "TMEM41A WILD-TYPE" 
       TCGA-HZ-7919        TCGA-HZ-7922        TCGA-HZ-7923        TCGA-HZ-7924 
"TMEM41A WILD-TYPE" "TMEM41A WILD-TYPE" "TMEM41A WILD-TYPE" "TMEM41A WILD-TYPE" 
       TCGA-HZ-7925        TCGA-HZ-7926        TCGA-HZ-8001        TCGA-HZ-8002 
"TMEM41A WILD-TYPE" "TMEM41A WILD-TYPE"   "TMEM41A MUTATED" "TMEM41A WILD-TYPE" 
       TCGA-HZ-8003        TCGA-HZ-8005        TCGA-HZ-8315        TCGA-HZ-8317 
"TMEM41A WILD-TYPE" "TMEM41A WILD-TYPE" "TMEM41A WILD-TYPE" "TMEM41A WILD-TYPE" 
       TCGA-HZ-8636        TCGA-HZ-8638        TCGA-HZ-A49G        TCGA-HZ-A49H 
"TMEM41A WILD-TYPE" "TMEM41A WILD-TYPE"   "TMEM41A MUTATED" "TMEM41A WILD-TYPE" 
       TCGA-HZ-A4BH        TCGA-HZ-A4BK        TCGA-IB-7644        TCGA-IB-7645 
"TMEM41A WILD-TYPE" "TMEM41A WILD-TYPE" "TMEM41A WILD-TYPE" "TMEM41A WILD-TYPE" 
       TCGA-IB-7646        TCGA-IB-7647        TCGA-IB-7649        TCGA-IB-7651 
"TMEM41A WILD-TYPE"   "TMEM41A MUTATED" "TMEM41A WILD-TYPE"   "TMEM41A MUTATED" 
       TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-7886        TCGA-IB-7887 
"TMEM41A WILD-TYPE" "TMEM41A WILD-TYPE" "TMEM41A WILD-TYPE" "TMEM41A WILD-TYPE" 
       TCGA-IB-7888        TCGA-IB-7889        TCGA-IB-7890        TCGA-IB-7891 
"TMEM41A WILD-TYPE" "TMEM41A WILD-TYPE" "TMEM41A WILD-TYPE" "TMEM41A WILD-TYPE" 
       TCGA-IB-7893        TCGA-IB-7897        TCGA-IB-8126        TCGA-IB-8127 
"TMEM41A WILD-TYPE" "TMEM41A WILD-TYPE" "TMEM41A WILD-TYPE" "TMEM41A WILD-TYPE" 
       TCGA-IB-A5SO        TCGA-IB-A5SP        TCGA-IB-A5SQ        TCGA-IB-A5SS 
"TMEM41A WILD-TYPE" "TMEM41A WILD-TYPE" "TMEM41A WILD-TYPE" "TMEM41A WILD-TYPE" 
       TCGA-IB-A5ST        TCGA-IB-A6UG        TCGA-LB-A7SX        TCGA-OE-A75W 
"TMEM41A WILD-TYPE" "TMEM41A WILD-TYPE" "TMEM41A WILD-TYPE" "TMEM41A WILD-TYPE" 
       TCGA-PZ-A5RE        TCGA-Q3-A5QY        TCGA-US-A779        TCGA-US-A77E 
"TMEM41A WILD-TYPE" "TMEM41A WILD-TYPE" "TMEM41A WILD-TYPE" "TMEM41A WILD-TYPE" 
       TCGA-US-A77J 
"TMEM41A WILD-TYPE" 
       TCGA-F2-6879        TCGA-F2-6880        TCGA-F2-7273        TCGA-F2-7276 
"TMEM41A WILD-TYPE" "TMEM41A WILD-TYPE" "TMEM41A WILD-TYPE" "TMEM41A WILD-TYPE" 
       TCGA-F2-A44G        TCGA-F2-A44H        TCGA-FB-A4P5        TCGA-FB-A4P6 
"TMEM41A WILD-TYPE" "TMEM41A WILD-TYPE"   "TMEM41A MUTATED" "TMEM41A WILD-TYPE" 
       TCGA-FB-A545        TCGA-FB-A5VM        TCGA-FB-A78T        TCGA-FB-A7DR 
"TMEM41A WILD-TYPE" "TMEM41A WILD-TYPE" "TMEM41A WILD-TYPE" "TMEM41A WILD-TYPE" 
       TCGA-FZ-5920        TCGA-FZ-5922        TCGA-FZ-5923        TCGA-H6-8124 
"TMEM41A WILD-TYPE" "TMEM41A WILD-TYPE" "TMEM41A WILD-TYPE"   "TMEM41A MUTATED" 
       TCGA-H6-A45N        TCGA-H8-A6C1        TCGA-HZ-7289        TCGA-HZ-7918 
"TMEM41A WILD-TYPE" "TMEM41A WILD-TYPE" "TMEM41A WILD-TYPE" "TMEM41A WILD-TYPE" 
       TCGA-HZ-7919        TCGA-HZ-7922        TCGA-HZ-7923        TCGA-HZ-7924 
"TMEM41A WILD-TYPE" "TMEM41A WILD-TYPE" "TMEM41A WILD-TYPE" "TMEM41A WILD-TYPE" 
       TCGA-HZ-7925        TCGA-HZ-7926        TCGA-HZ-8001        TCGA-HZ-8002 
"TMEM41A WILD-TYPE" "TMEM41A WILD-TYPE"   "TMEM41A MUTATED" "TMEM41A WILD-TYPE" 
       TCGA-HZ-8003        TCGA-HZ-8005        TCGA-HZ-8315        TCGA-HZ-8317 
"TMEM41A WILD-TYPE" "TMEM41A WILD-TYPE" "TMEM41A WILD-TYPE" "TMEM41A WILD-TYPE" 
       TCGA-HZ-8636        TCGA-HZ-8638        TCGA-HZ-A49G        TCGA-HZ-A49H 
"TMEM41A WILD-TYPE" "TMEM41A WILD-TYPE"   "TMEM41A MUTATED" "TMEM41A WILD-TYPE" 
       TCGA-HZ-A4BH        TCGA-HZ-A4BK        TCGA-IB-7644        TCGA-IB-7645 
"TMEM41A WILD-TYPE" "TMEM41A WILD-TYPE" "TMEM41A WILD-TYPE" "TMEM41A WILD-TYPE" 
       TCGA-IB-7646        TCGA-IB-7647        TCGA-IB-7649        TCGA-IB-7651 
"TMEM41A WILD-TYPE"   "TMEM41A MUTATED" "TMEM41A WILD-TYPE"   "TMEM41A MUTATED" 
       TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-7886        TCGA-IB-7887 
"TMEM41A WILD-TYPE" "TMEM41A WILD-TYPE" "TMEM41A WILD-TYPE" "TMEM41A WILD-TYPE" 
       TCGA-IB-7888        TCGA-IB-7889        TCGA-IB-7890        TCGA-IB-7891 
"TMEM41A WILD-TYPE" "TMEM41A WILD-TYPE" "TMEM41A WILD-TYPE" "TMEM41A WILD-TYPE" 
       TCGA-IB-7893        TCGA-IB-7897        TCGA-IB-8126        TCGA-IB-8127 
"TMEM41A WILD-TYPE" "TMEM41A WILD-TYPE" "TMEM41A WILD-TYPE" "TMEM41A WILD-TYPE" 
       TCGA-IB-A5SO        TCGA-IB-A5SP        TCGA-IB-A5SQ        TCGA-IB-A5SS 
"TMEM41A WILD-TYPE" "TMEM41A WILD-TYPE" "TMEM41A WILD-TYPE" "TMEM41A WILD-TYPE" 
       TCGA-IB-A5ST        TCGA-IB-A6UG        TCGA-LB-A7SX        TCGA-OE-A75W 
"TMEM41A WILD-TYPE" "TMEM41A WILD-TYPE" "TMEM41A WILD-TYPE" "TMEM41A WILD-TYPE" 
       TCGA-PZ-A5RE        TCGA-Q3-A5QY        TCGA-US-A779        TCGA-US-A77E 
"TMEM41A WILD-TYPE" "TMEM41A WILD-TYPE" "TMEM41A WILD-TYPE" "TMEM41A WILD-TYPE" 
       TCGA-US-A77J 
"TMEM41A WILD-TYPE" 
       TCGA-F2-6879        TCGA-F2-6880        TCGA-F2-7273        TCGA-F2-7276 
"TMEM41A WILD-TYPE" "TMEM41A WILD-TYPE" "TMEM41A WILD-TYPE" "TMEM41A WILD-TYPE" 
       TCGA-F2-A44G        TCGA-F2-A44H        TCGA-FB-A4P5        TCGA-FB-A4P6 
"TMEM41A WILD-TYPE" "TMEM41A WILD-TYPE"   "TMEM41A MUTATED" "TMEM41A WILD-TYPE" 
       TCGA-FB-A545        TCGA-FB-A5VM        TCGA-FB-A78T        TCGA-FB-A7DR 
"TMEM41A WILD-TYPE" "TMEM41A WILD-TYPE" "TMEM41A WILD-TYPE" "TMEM41A WILD-TYPE" 
       TCGA-FZ-5920        TCGA-FZ-5922        TCGA-FZ-5923        TCGA-H6-8124 
"TMEM41A WILD-TYPE" "TMEM41A WILD-TYPE" "TMEM41A WILD-TYPE"   "TMEM41A MUTATED" 
       TCGA-H6-A45N        TCGA-H8-A6C1        TCGA-HZ-7289        TCGA-HZ-7918 
"TMEM41A WILD-TYPE" "TMEM41A WILD-TYPE" "TMEM41A WILD-TYPE" "TMEM41A WILD-TYPE" 
       TCGA-HZ-7919        TCGA-HZ-7922        TCGA-HZ-7923        TCGA-HZ-7924 
"TMEM41A WILD-TYPE" "TMEM41A WILD-TYPE" "TMEM41A WILD-TYPE" "TMEM41A WILD-TYPE" 
       TCGA-HZ-7925        TCGA-HZ-7926        TCGA-HZ-8001        TCGA-HZ-8002 
"TMEM41A WILD-TYPE" "TMEM41A WILD-TYPE"   "TMEM41A MUTATED" "TMEM41A WILD-TYPE" 
       TCGA-HZ-8003        TCGA-HZ-8005        TCGA-HZ-8315        TCGA-HZ-8317 
"TMEM41A WILD-TYPE" "TMEM41A WILD-TYPE" "TMEM41A WILD-TYPE" "TMEM41A WILD-TYPE" 
       TCGA-HZ-8636        TCGA-HZ-8638        TCGA-HZ-A49G        TCGA-HZ-A49H 
"TMEM41A WILD-TYPE" "TMEM41A WILD-TYPE"   "TMEM41A MUTATED" "TMEM41A WILD-TYPE" 
       TCGA-HZ-A4BH        TCGA-HZ-A4BK        TCGA-IB-7644        TCGA-IB-7645 
"TMEM41A WILD-TYPE" "TMEM41A WILD-TYPE" "TMEM41A WILD-TYPE" "TMEM41A WILD-TYPE" 
       TCGA-IB-7646        TCGA-IB-7647        TCGA-IB-7649        TCGA-IB-7651 
"TMEM41A WILD-TYPE"   "TMEM41A MUTATED" "TMEM41A WILD-TYPE"   "TMEM41A MUTATED" 
       TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-7886        TCGA-IB-7887 
"TMEM41A WILD-TYPE" "TMEM41A WILD-TYPE" "TMEM41A WILD-TYPE" "TMEM41A WILD-TYPE" 
       TCGA-IB-7888        TCGA-IB-7889        TCGA-IB-7890        TCGA-IB-7891 
"TMEM41A WILD-TYPE" "TMEM41A WILD-TYPE" "TMEM41A WILD-TYPE" "TMEM41A WILD-TYPE" 
       TCGA-IB-7893        TCGA-IB-7897        TCGA-IB-8126        TCGA-IB-8127 
"TMEM41A WILD-TYPE" "TMEM41A WILD-TYPE" "TMEM41A WILD-TYPE" "TMEM41A WILD-TYPE" 
       TCGA-IB-A5SO        TCGA-IB-A5SP        TCGA-IB-A5SQ        TCGA-IB-A5SS 
"TMEM41A WILD-TYPE" "TMEM41A WILD-TYPE" "TMEM41A WILD-TYPE" "TMEM41A WILD-TYPE" 
       TCGA-IB-A5ST        TCGA-IB-A6UG        TCGA-LB-A7SX        TCGA-OE-A75W 
"TMEM41A WILD-TYPE" "TMEM41A WILD-TYPE" "TMEM41A WILD-TYPE" "TMEM41A WILD-TYPE" 
       TCGA-PZ-A5RE        TCGA-Q3-A5QY        TCGA-US-A779        TCGA-US-A77E 
"TMEM41A WILD-TYPE" "TMEM41A WILD-TYPE" "TMEM41A WILD-TYPE" "TMEM41A WILD-TYPE" 
       TCGA-US-A77J 
"TMEM41A WILD-TYPE" 
[1] "hr=" "1"  
D159V2, continuous
                   vv
clus                STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  TMEM41A MUTATED          0        0         0         5         1        0
  TMEM41A WILD-TYPE        1        4        11        46         1        3
D159V3, multiclass
                   vv
clus                T1+T2 T3+T4
  TMEM41A MUTATED       1     5
  TMEM41A WILD-TYPE     5    61
D159V4, multiclass
       clus
vv      TMEM41A MUTATED TMEM41A WILD-TYPE
  T1+T2               1                 5
  T3+T4               5                61
D159V5, binary
                   cls
clus                 0  1
  TMEM41A MUTATED    1  5
  TMEM41A WILD-TYPE 16 49
[1] "tbl2"
                   cls
clus                [,1] [,2]
  TMEM41A MUTATED      1    5
  TMEM41A WILD-TYPE   16   49
   clus
vv  TMEM41A MUTATED TMEM41A WILD-TYPE
  0               1                16
  1               5                49
                   vv
clus                M0 M1 MX
  TMEM41A MUTATED    3  0  3
  TMEM41A WILD-TYPE 36  3 27
D159V6, multiclass
    clus
vv   TMEM41A MUTATED TMEM41A WILD-TYPE
  M0               3                36
  M1               0                 3
  MX               3                27
D159V7, binary
                   cls
clus                 0  1
  TMEM41A MUTATED    5  1
  TMEM41A WILD-TYPE 31 35
[1] "tbl2"
                   cls
clus                [,1] [,2]
  TMEM41A MUTATED      5    1
  TMEM41A WILD-TYPE   31   35
        clus
vv       TMEM41A MUTATED TMEM41A WILD-TYPE
  FEMALE               5                31
  MALE                 1                35
                   vv
clus                PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  TMEM41A MUTATED                                     6
  TMEM41A WILD-TYPE                                  59
                   vv
clus                PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  TMEM41A MUTATED                                       0
  TMEM41A WILD-TYPE                                     4
                   vv
clus                PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  TMEM41A MUTATED                                                  0
  TMEM41A WILD-TYPE                                                2
D159V8, multiclass
                                                  clus
vv                                                 TMEM41A MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                            6
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                          0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA               0
                                                  clus
vv                                                 TMEM41A WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                             59
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                            4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                 2
D159V9, continuous
D159V10, continuous
                   vv
clus                R0 R1 RX
  TMEM41A MUTATED    4  2  0
  TMEM41A WILD-TYPE 38 22  2
D159V11, multiclass
    clus
vv   TMEM41A MUTATED TMEM41A WILD-TYPE
  R0               4                38
  R1               2                22
  RX               0                 2
D159V12, continuous

Clustering(160) Variable = CYP20A1 MUTATION ANALYSIS
D160V1, survival
                   sevent
clus2                0  1
  CYP20A1 MUTATED    4  4
  CYP20A1 WILD-TYPE 36 25
  CYP20A1 MUTATED CYP20A1 WILD-TYPE 
                8                61 
  CYP20A1 MUTATED CYP20A1 WILD-TYPE 
                4                25 
$`CYP20A1 MUTATED`
TCGA-FB-A4P5 TCGA-HZ-7926 TCGA-HZ-8003 TCGA-HZ-8315 TCGA-IB-7651 TCGA-IB-7885 
        0.13         0.26         0.69         0.92        19.82        27.98 
TCGA-IB-7888 TCGA-IB-7897 
       43.79        15.98 

$`CYP20A1 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR TCGA-FZ-5920 
       11.93        12.66         2.47         0.03         5.46         2.01 
TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7289 
       36.20        20.81        12.89         7.66        13.02         7.89 
TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 
        0.92         0.66         0.13         0.26        12.13        11.87 
TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8005 TCGA-HZ-8317 TCGA-HZ-8636 TCGA-HZ-8638 
        0.62         0.79         3.95         0.53         0.16         2.99 
TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7645 
        0.76         0.95         6.38         1.51        11.41        49.38 
TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7652 TCGA-IB-7886 TCGA-IB-7887 
        4.77        21.90        15.35        15.65         4.04         3.62 
TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-8126 TCGA-IB-8127 
       15.81        19.66        16.04         3.85         0.56        17.16 
TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG 
       10.82         9.86         7.20        15.12         0.26         1.35 
TCGA-LB-A7SX TCGA-OE-A75W TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E 
        4.18         3.62         8.12        13.68        16.80        14.14 
TCGA-US-A77J 
       18.67 

  CYP20A1 MUTATED CYP20A1 WILD-TYPE 
             0.13              0.03 
  CYP20A1 MUTATED CYP20A1 WILD-TYPE 
            43.79             49.38 
  CYP20A1 MUTATED CYP20A1 WILD-TYPE 
             8.45              7.66 
[1] "0.1 - 43.8 (8.5)" "0.0 - 49.4 (7.7)"
       TCGA-F2-6879        TCGA-F2-6880        TCGA-F2-7273        TCGA-F2-7276 
"CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" 
       TCGA-F2-A44G        TCGA-F2-A44H        TCGA-FB-A4P5        TCGA-FB-A4P6 
"CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE"   "CYP20A1 MUTATED" "CYP20A1 WILD-TYPE" 
       TCGA-FB-A545        TCGA-FB-A5VM        TCGA-FB-A78T        TCGA-FB-A7DR 
"CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" 
       TCGA-FZ-5920        TCGA-FZ-5922        TCGA-FZ-5923        TCGA-H6-8124 
"CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" 
       TCGA-H6-A45N        TCGA-H8-A6C1        TCGA-HZ-7289        TCGA-HZ-7918 
"CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" 
       TCGA-HZ-7919        TCGA-HZ-7922        TCGA-HZ-7923        TCGA-HZ-7924 
"CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" 
       TCGA-HZ-7925        TCGA-HZ-7926        TCGA-HZ-8001        TCGA-HZ-8002 
"CYP20A1 WILD-TYPE"   "CYP20A1 MUTATED" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" 
       TCGA-HZ-8003        TCGA-HZ-8005        TCGA-HZ-8315        TCGA-HZ-8317 
  "CYP20A1 MUTATED" "CYP20A1 WILD-TYPE"   "CYP20A1 MUTATED" "CYP20A1 WILD-TYPE" 
       TCGA-HZ-8636        TCGA-HZ-8638        TCGA-HZ-A49G        TCGA-HZ-A49H 
"CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" 
       TCGA-HZ-A4BH        TCGA-HZ-A4BK        TCGA-IB-7644        TCGA-IB-7645 
"CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" 
       TCGA-IB-7646        TCGA-IB-7647        TCGA-IB-7649        TCGA-IB-7651 
"CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE"   "CYP20A1 MUTATED" 
       TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-7886        TCGA-IB-7887 
"CYP20A1 WILD-TYPE"   "CYP20A1 MUTATED" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" 
       TCGA-IB-7888        TCGA-IB-7889        TCGA-IB-7890        TCGA-IB-7891 
  "CYP20A1 MUTATED" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" 
       TCGA-IB-7893        TCGA-IB-7897        TCGA-IB-8126        TCGA-IB-8127 
"CYP20A1 WILD-TYPE"   "CYP20A1 MUTATED" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" 
       TCGA-IB-A5SO        TCGA-IB-A5SP        TCGA-IB-A5SQ        TCGA-IB-A5SS 
"CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" 
       TCGA-IB-A5ST        TCGA-IB-A6UG        TCGA-LB-A7SX        TCGA-OE-A75W 
"CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" 
       TCGA-PZ-A5RE        TCGA-Q3-A5QY        TCGA-US-A779        TCGA-US-A77E 
"CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" 
       TCGA-US-A77J 
"CYP20A1 WILD-TYPE" 
       TCGA-F2-6879        TCGA-F2-6880        TCGA-F2-7273        TCGA-F2-7276 
"CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" 
       TCGA-F2-A44G        TCGA-F2-A44H        TCGA-FB-A4P5        TCGA-FB-A4P6 
"CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE"   "CYP20A1 MUTATED" "CYP20A1 WILD-TYPE" 
       TCGA-FB-A545        TCGA-FB-A5VM        TCGA-FB-A78T        TCGA-FB-A7DR 
"CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" 
       TCGA-FZ-5920        TCGA-FZ-5922        TCGA-FZ-5923        TCGA-H6-8124 
"CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" 
       TCGA-H6-A45N        TCGA-H8-A6C1        TCGA-HZ-7289        TCGA-HZ-7918 
"CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" 
       TCGA-HZ-7919        TCGA-HZ-7922        TCGA-HZ-7923        TCGA-HZ-7924 
"CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" 
       TCGA-HZ-7925        TCGA-HZ-7926        TCGA-HZ-8001        TCGA-HZ-8002 
"CYP20A1 WILD-TYPE"   "CYP20A1 MUTATED" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" 
       TCGA-HZ-8003        TCGA-HZ-8005        TCGA-HZ-8315        TCGA-HZ-8317 
  "CYP20A1 MUTATED" "CYP20A1 WILD-TYPE"   "CYP20A1 MUTATED" "CYP20A1 WILD-TYPE" 
       TCGA-HZ-8636        TCGA-HZ-8638        TCGA-HZ-A49G        TCGA-HZ-A49H 
"CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" 
       TCGA-HZ-A4BH        TCGA-HZ-A4BK        TCGA-IB-7644        TCGA-IB-7645 
"CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" 
       TCGA-IB-7646        TCGA-IB-7647        TCGA-IB-7649        TCGA-IB-7651 
"CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE"   "CYP20A1 MUTATED" 
       TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-7886        TCGA-IB-7887 
"CYP20A1 WILD-TYPE"   "CYP20A1 MUTATED" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" 
       TCGA-IB-7888        TCGA-IB-7889        TCGA-IB-7890        TCGA-IB-7891 
  "CYP20A1 MUTATED" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" 
       TCGA-IB-7893        TCGA-IB-7897        TCGA-IB-8126        TCGA-IB-8127 
"CYP20A1 WILD-TYPE"   "CYP20A1 MUTATED" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" 
       TCGA-IB-A5SO        TCGA-IB-A5SP        TCGA-IB-A5SQ        TCGA-IB-A5SS 
"CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" 
       TCGA-IB-A5ST        TCGA-IB-A6UG        TCGA-LB-A7SX        TCGA-OE-A75W 
"CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" 
       TCGA-PZ-A5RE        TCGA-Q3-A5QY        TCGA-US-A779        TCGA-US-A77E 
"CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" 
       TCGA-US-A77J 
"CYP20A1 WILD-TYPE" 
       TCGA-F2-6879        TCGA-F2-6880        TCGA-F2-7273        TCGA-F2-7276 
"CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" 
       TCGA-F2-A44G        TCGA-F2-A44H        TCGA-FB-A4P5        TCGA-FB-A4P6 
"CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE"   "CYP20A1 MUTATED" "CYP20A1 WILD-TYPE" 
       TCGA-FB-A545        TCGA-FB-A5VM        TCGA-FB-A78T        TCGA-FB-A7DR 
"CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" 
       TCGA-FZ-5920        TCGA-FZ-5922        TCGA-FZ-5923        TCGA-H6-8124 
"CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" 
       TCGA-H6-A45N        TCGA-H8-A6C1        TCGA-HZ-7289        TCGA-HZ-7918 
"CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" 
       TCGA-HZ-7919        TCGA-HZ-7922        TCGA-HZ-7923        TCGA-HZ-7924 
"CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" 
       TCGA-HZ-7925        TCGA-HZ-7926        TCGA-HZ-8001        TCGA-HZ-8002 
"CYP20A1 WILD-TYPE"   "CYP20A1 MUTATED" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" 
       TCGA-HZ-8003        TCGA-HZ-8005        TCGA-HZ-8315        TCGA-HZ-8317 
  "CYP20A1 MUTATED" "CYP20A1 WILD-TYPE"   "CYP20A1 MUTATED" "CYP20A1 WILD-TYPE" 
       TCGA-HZ-8636        TCGA-HZ-8638        TCGA-HZ-A49G        TCGA-HZ-A49H 
"CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" 
       TCGA-HZ-A4BH        TCGA-HZ-A4BK        TCGA-IB-7644        TCGA-IB-7645 
"CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" 
       TCGA-IB-7646        TCGA-IB-7647        TCGA-IB-7649        TCGA-IB-7651 
"CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE"   "CYP20A1 MUTATED" 
       TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-7886        TCGA-IB-7887 
"CYP20A1 WILD-TYPE"   "CYP20A1 MUTATED" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" 
       TCGA-IB-7888        TCGA-IB-7889        TCGA-IB-7890        TCGA-IB-7891 
  "CYP20A1 MUTATED" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" 
       TCGA-IB-7893        TCGA-IB-7897        TCGA-IB-8126        TCGA-IB-8127 
"CYP20A1 WILD-TYPE"   "CYP20A1 MUTATED" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" 
       TCGA-IB-A5SO        TCGA-IB-A5SP        TCGA-IB-A5SQ        TCGA-IB-A5SS 
"CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" 
       TCGA-IB-A5ST        TCGA-IB-A6UG        TCGA-LB-A7SX        TCGA-OE-A75W 
"CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" 
       TCGA-PZ-A5RE        TCGA-Q3-A5QY        TCGA-US-A779        TCGA-US-A77E 
"CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" "CYP20A1 WILD-TYPE" 
       TCGA-US-A77J 
"CYP20A1 WILD-TYPE" 
[1] "hr=" "1.6"
D160V2, continuous
                   vv
clus                STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  CYP20A1 MUTATED          0        0         2         6         0        0
  CYP20A1 WILD-TYPE        1        4         9        45         2        3
D160V3, multiclass
                   vv
clus                T1+T2 T3+T4
  CYP20A1 MUTATED       0     8
  CYP20A1 WILD-TYPE     6    58
D160V4, multiclass
       clus
vv      CYP20A1 MUTATED CYP20A1 WILD-TYPE
  T1+T2               0                 6
  T3+T4               8                58
D160V5, binary
                   cls
clus                 0  1
  CYP20A1 MUTATED    2  6
  CYP20A1 WILD-TYPE 15 48
[1] "tbl2"
                   cls
clus                [,1] [,2]
  CYP20A1 MUTATED      2    6
  CYP20A1 WILD-TYPE   15   48
   clus
vv  CYP20A1 MUTATED CYP20A1 WILD-TYPE
  0               2                15
  1               6                48
                   vv
clus                M0 M1 MX
  CYP20A1 MUTATED    4  0  4
  CYP20A1 WILD-TYPE 35  3 26
D160V6, multiclass
    clus
vv   CYP20A1 MUTATED CYP20A1 WILD-TYPE
  M0               4                35
  M1               0                 3
  MX               4                26
D160V7, binary
                   cls
clus                 0  1
  CYP20A1 MUTATED    7  1
  CYP20A1 WILD-TYPE 29 35
[1] "tbl2"
                   cls
clus                [,1] [,2]
  CYP20A1 MUTATED      7    1
  CYP20A1 WILD-TYPE   29   35
        clus
vv       CYP20A1 MUTATED CYP20A1 WILD-TYPE
  FEMALE               7                29
  MALE                 1                35
                   vv
clus                PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  CYP20A1 MUTATED                                     8
  CYP20A1 WILD-TYPE                                  57
                   vv
clus                PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  CYP20A1 MUTATED                                       0
  CYP20A1 WILD-TYPE                                     4
                   vv
clus                PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  CYP20A1 MUTATED                                                  0
  CYP20A1 WILD-TYPE                                                2
D160V8, multiclass
                                                  clus
vv                                                 CYP20A1 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                            8
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                          0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA               0
                                                  clus
vv                                                 CYP20A1 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                             57
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                            4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                 2
D160V9, continuous
D160V10, continuous
                   vv
clus                R0 R1 RX
  CYP20A1 MUTATED    6  1  1
  CYP20A1 WILD-TYPE 36 23  1
D160V11, multiclass
    clus
vv   CYP20A1 MUTATED CYP20A1 WILD-TYPE
  R0               6                36
  R1               1                23
  RX               1                 1
D160V12, continuous

Clustering(161) Variable = SLC34A2 MUTATION ANALYSIS
D161V1, survival
                   sevent
clus2                0  1
  SLC34A2 MUTATED    6  4
  SLC34A2 WILD-TYPE 34 25
  SLC34A2 MUTATED SLC34A2 WILD-TYPE 
               10                59 
  SLC34A2 MUTATED SLC34A2 WILD-TYPE 
                4                25 
$`SLC34A2 MUTATED`
TCGA-F2-7276 TCGA-F2-A44H TCGA-FB-A545 TCGA-HZ-7919 TCGA-HZ-8638 TCGA-IB-7646 
        7.10        19.27        12.66         0.66         2.99         4.77 
TCGA-IB-7651 TCGA-IB-7887 TCGA-IB-8127 TCGA-LB-A7SX 
       19.82         3.62        17.16         4.18 

$`SLC34A2 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-A44G TCGA-FB-A4P5 TCGA-FB-A4P6 
       10.98         9.70        11.84         5.03         0.13        11.93 
TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR TCGA-FZ-5920 TCGA-FZ-5922 TCGA-FZ-5923 
        2.47         0.03         5.46         2.01        36.20        20.81 
TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-7922 
       12.89         7.66        13.02         7.89         0.92         0.13 
TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 
        0.26        12.13        11.87         0.26         0.62         0.79 
TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8636 TCGA-HZ-A49G 
        0.69         3.95         0.92         0.53         0.16         0.76 
TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7647 
        0.95         6.38         1.51        11.41        49.38        21.90 
TCGA-IB-7649 TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7888 TCGA-IB-7889 
       15.35        15.65        27.98         4.04        43.79        15.81 
TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-A5SO 
       19.66        16.04         3.85        15.98         0.56        10.82 
TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-OE-A75W 
        9.86         7.20        15.12         0.26         1.35         3.62 
TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
        8.12        13.68        16.80        14.14        18.67 

  SLC34A2 MUTATED SLC34A2 WILD-TYPE 
             0.66              0.03 
  SLC34A2 MUTATED SLC34A2 WILD-TYPE 
            19.82             49.38 
  SLC34A2 MUTATED SLC34A2 WILD-TYPE 
            5.935             7.890 
[1] "0.7 - 19.8 (5.9)" "0.0 - 49.4 (7.9)"
       TCGA-F2-6879        TCGA-F2-6880        TCGA-F2-7273        TCGA-F2-7276 
"SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE"   "SLC34A2 MUTATED" 
       TCGA-F2-A44G        TCGA-F2-A44H        TCGA-FB-A4P5        TCGA-FB-A4P6 
"SLC34A2 WILD-TYPE"   "SLC34A2 MUTATED" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" 
       TCGA-FB-A545        TCGA-FB-A5VM        TCGA-FB-A78T        TCGA-FB-A7DR 
  "SLC34A2 MUTATED" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" 
       TCGA-FZ-5920        TCGA-FZ-5922        TCGA-FZ-5923        TCGA-H6-8124 
"SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" 
       TCGA-H6-A45N        TCGA-H8-A6C1        TCGA-HZ-7289        TCGA-HZ-7918 
"SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" 
       TCGA-HZ-7919        TCGA-HZ-7922        TCGA-HZ-7923        TCGA-HZ-7924 
  "SLC34A2 MUTATED" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" 
       TCGA-HZ-7925        TCGA-HZ-7926        TCGA-HZ-8001        TCGA-HZ-8002 
"SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" 
       TCGA-HZ-8003        TCGA-HZ-8005        TCGA-HZ-8315        TCGA-HZ-8317 
"SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" 
       TCGA-HZ-8636        TCGA-HZ-8638        TCGA-HZ-A49G        TCGA-HZ-A49H 
"SLC34A2 WILD-TYPE"   "SLC34A2 MUTATED" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" 
       TCGA-HZ-A4BH        TCGA-HZ-A4BK        TCGA-IB-7644        TCGA-IB-7645 
"SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" 
       TCGA-IB-7646        TCGA-IB-7647        TCGA-IB-7649        TCGA-IB-7651 
  "SLC34A2 MUTATED" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE"   "SLC34A2 MUTATED" 
       TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-7886        TCGA-IB-7887 
"SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE"   "SLC34A2 MUTATED" 
       TCGA-IB-7888        TCGA-IB-7889        TCGA-IB-7890        TCGA-IB-7891 
"SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" 
       TCGA-IB-7893        TCGA-IB-7897        TCGA-IB-8126        TCGA-IB-8127 
"SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE"   "SLC34A2 MUTATED" 
       TCGA-IB-A5SO        TCGA-IB-A5SP        TCGA-IB-A5SQ        TCGA-IB-A5SS 
"SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" 
       TCGA-IB-A5ST        TCGA-IB-A6UG        TCGA-LB-A7SX        TCGA-OE-A75W 
"SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE"   "SLC34A2 MUTATED" "SLC34A2 WILD-TYPE" 
       TCGA-PZ-A5RE        TCGA-Q3-A5QY        TCGA-US-A779        TCGA-US-A77E 
"SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" 
       TCGA-US-A77J 
"SLC34A2 WILD-TYPE" 
       TCGA-F2-6879        TCGA-F2-6880        TCGA-F2-7273        TCGA-F2-7276 
"SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE"   "SLC34A2 MUTATED" 
       TCGA-F2-A44G        TCGA-F2-A44H        TCGA-FB-A4P5        TCGA-FB-A4P6 
"SLC34A2 WILD-TYPE"   "SLC34A2 MUTATED" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" 
       TCGA-FB-A545        TCGA-FB-A5VM        TCGA-FB-A78T        TCGA-FB-A7DR 
  "SLC34A2 MUTATED" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" 
       TCGA-FZ-5920        TCGA-FZ-5922        TCGA-FZ-5923        TCGA-H6-8124 
"SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" 
       TCGA-H6-A45N        TCGA-H8-A6C1        TCGA-HZ-7289        TCGA-HZ-7918 
"SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" 
       TCGA-HZ-7919        TCGA-HZ-7922        TCGA-HZ-7923        TCGA-HZ-7924 
  "SLC34A2 MUTATED" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" 
       TCGA-HZ-7925        TCGA-HZ-7926        TCGA-HZ-8001        TCGA-HZ-8002 
"SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" 
       TCGA-HZ-8003        TCGA-HZ-8005        TCGA-HZ-8315        TCGA-HZ-8317 
"SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" 
       TCGA-HZ-8636        TCGA-HZ-8638        TCGA-HZ-A49G        TCGA-HZ-A49H 
"SLC34A2 WILD-TYPE"   "SLC34A2 MUTATED" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" 
       TCGA-HZ-A4BH        TCGA-HZ-A4BK        TCGA-IB-7644        TCGA-IB-7645 
"SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" 
       TCGA-IB-7646        TCGA-IB-7647        TCGA-IB-7649        TCGA-IB-7651 
  "SLC34A2 MUTATED" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE"   "SLC34A2 MUTATED" 
       TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-7886        TCGA-IB-7887 
"SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE"   "SLC34A2 MUTATED" 
       TCGA-IB-7888        TCGA-IB-7889        TCGA-IB-7890        TCGA-IB-7891 
"SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" 
       TCGA-IB-7893        TCGA-IB-7897        TCGA-IB-8126        TCGA-IB-8127 
"SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE"   "SLC34A2 MUTATED" 
       TCGA-IB-A5SO        TCGA-IB-A5SP        TCGA-IB-A5SQ        TCGA-IB-A5SS 
"SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" 
       TCGA-IB-A5ST        TCGA-IB-A6UG        TCGA-LB-A7SX        TCGA-OE-A75W 
"SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE"   "SLC34A2 MUTATED" "SLC34A2 WILD-TYPE" 
       TCGA-PZ-A5RE        TCGA-Q3-A5QY        TCGA-US-A779        TCGA-US-A77E 
"SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" 
       TCGA-US-A77J 
"SLC34A2 WILD-TYPE" 
       TCGA-F2-6879        TCGA-F2-6880        TCGA-F2-7273        TCGA-F2-7276 
"SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE"   "SLC34A2 MUTATED" 
       TCGA-F2-A44G        TCGA-F2-A44H        TCGA-FB-A4P5        TCGA-FB-A4P6 
"SLC34A2 WILD-TYPE"   "SLC34A2 MUTATED" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" 
       TCGA-FB-A545        TCGA-FB-A5VM        TCGA-FB-A78T        TCGA-FB-A7DR 
  "SLC34A2 MUTATED" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" 
       TCGA-FZ-5920        TCGA-FZ-5922        TCGA-FZ-5923        TCGA-H6-8124 
"SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" 
       TCGA-H6-A45N        TCGA-H8-A6C1        TCGA-HZ-7289        TCGA-HZ-7918 
"SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" 
       TCGA-HZ-7919        TCGA-HZ-7922        TCGA-HZ-7923        TCGA-HZ-7924 
  "SLC34A2 MUTATED" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" 
       TCGA-HZ-7925        TCGA-HZ-7926        TCGA-HZ-8001        TCGA-HZ-8002 
"SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" 
       TCGA-HZ-8003        TCGA-HZ-8005        TCGA-HZ-8315        TCGA-HZ-8317 
"SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" 
       TCGA-HZ-8636        TCGA-HZ-8638        TCGA-HZ-A49G        TCGA-HZ-A49H 
"SLC34A2 WILD-TYPE"   "SLC34A2 MUTATED" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" 
       TCGA-HZ-A4BH        TCGA-HZ-A4BK        TCGA-IB-7644        TCGA-IB-7645 
"SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" 
       TCGA-IB-7646        TCGA-IB-7647        TCGA-IB-7649        TCGA-IB-7651 
  "SLC34A2 MUTATED" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE"   "SLC34A2 MUTATED" 
       TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-7886        TCGA-IB-7887 
"SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE"   "SLC34A2 MUTATED" 
       TCGA-IB-7888        TCGA-IB-7889        TCGA-IB-7890        TCGA-IB-7891 
"SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" 
       TCGA-IB-7893        TCGA-IB-7897        TCGA-IB-8126        TCGA-IB-8127 
"SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE"   "SLC34A2 MUTATED" 
       TCGA-IB-A5SO        TCGA-IB-A5SP        TCGA-IB-A5SQ        TCGA-IB-A5SS 
"SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" 
       TCGA-IB-A5ST        TCGA-IB-A6UG        TCGA-LB-A7SX        TCGA-OE-A75W 
"SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE"   "SLC34A2 MUTATED" "SLC34A2 WILD-TYPE" 
       TCGA-PZ-A5RE        TCGA-Q3-A5QY        TCGA-US-A779        TCGA-US-A77E 
"SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" 
       TCGA-US-A77J 
"SLC34A2 WILD-TYPE" 
[1] "hr=" "1"  
D161V2, continuous
                   vv
clus                STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  SLC34A2 MUTATED          1        0         1         8         0        0
  SLC34A2 WILD-TYPE        0        4        10        43         2        3
D161V3, multiclass
                   vv
clus                T1+T2 T3+T4
  SLC34A2 MUTATED       1     9
  SLC34A2 WILD-TYPE     5    57
D161V4, multiclass
       clus
vv      SLC34A2 MUTATED SLC34A2 WILD-TYPE
  T1+T2               1                 5
  T3+T4               9                57
D161V5, binary
                   cls
clus                 0  1
  SLC34A2 MUTATED    2  8
  SLC34A2 WILD-TYPE 15 46
[1] "tbl2"
                   cls
clus                [,1] [,2]
  SLC34A2 MUTATED      2    8
  SLC34A2 WILD-TYPE   15   46
   clus
vv  SLC34A2 MUTATED SLC34A2 WILD-TYPE
  0               2                15
  1               8                46
                   vv
clus                M0 M1 MX
  SLC34A2 MUTATED    8  0  2
  SLC34A2 WILD-TYPE 31  3 28
D161V6, multiclass
    clus
vv   SLC34A2 MUTATED SLC34A2 WILD-TYPE
  M0               8                31
  M1               0                 3
  MX               2                28
D161V7, binary
                   cls
clus                 0  1
  SLC34A2 MUTATED    6  4
  SLC34A2 WILD-TYPE 30 32
[1] "tbl2"
                   cls
clus                [,1] [,2]
  SLC34A2 MUTATED      6    4
  SLC34A2 WILD-TYPE   30   32
        clus
vv       SLC34A2 MUTATED SLC34A2 WILD-TYPE
  FEMALE               6                30
  MALE                 4                32
                   vv
clus                PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  SLC34A2 MUTATED                                     9
  SLC34A2 WILD-TYPE                                  56
                   vv
clus                PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  SLC34A2 MUTATED                                       0
  SLC34A2 WILD-TYPE                                     4
                   vv
clus                PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  SLC34A2 MUTATED                                                  1
  SLC34A2 WILD-TYPE                                                1
D161V8, multiclass
                                                  clus
vv                                                 SLC34A2 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                            9
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                          0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA               1
                                                  clus
vv                                                 SLC34A2 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                             56
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                            4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                 1
D161V9, continuous
D161V10, continuous
                   vv
clus                R0 R1 RX
  SLC34A2 MUTATED    4  5  0
  SLC34A2 WILD-TYPE 38 19  2
D161V11, multiclass
    clus
vv   SLC34A2 MUTATED SLC34A2 WILD-TYPE
  R0               4                38
  R1               5                19
  RX               0                 2
D161V12, continuous

Clustering(162) Variable = ZNF207 MUTATION ANALYSIS
D162V1, survival
                  sevent
clus2               0  1
  ZNF207 MUTATED    3  4
  ZNF207 WILD-TYPE 37 25
  ZNF207 MUTATED ZNF207 WILD-TYPE 
               7               62 
  ZNF207 MUTATED ZNF207 WILD-TYPE 
               4               25 
$`ZNF207 MUTATED`
TCGA-FB-A4P5 TCGA-HZ-8638 TCGA-HZ-A4BH TCGA-IB-7649 TCGA-IB-7651 TCGA-IB-7891 
        0.13         2.99         6.38        15.35        19.82        16.04 
TCGA-IB-7897 
       15.98 

$`ZNF207 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR TCGA-FZ-5920 
       11.93        12.66         2.47         0.03         5.46         2.01 
TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7289 
       36.20        20.81        12.89         7.66        13.02         7.89 
TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 
        0.92         0.66         0.13         0.26        12.13        11.87 
TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 
        0.26         0.62         0.79         0.69         3.95         0.92 
TCGA-HZ-8317 TCGA-HZ-8636 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BK TCGA-IB-7644 
        0.53         0.16         0.76         0.95         1.51        11.41 
TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7886 
       49.38         4.77        21.90        15.65        27.98         4.04 
TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7893 TCGA-IB-8126 
        3.62        43.79        15.81        19.66         3.85         0.56 
TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST 
       17.16        10.82         9.86         7.20        15.12         0.26 
TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 
        1.35         4.18         3.62         8.12        13.68        16.80 
TCGA-US-A77E TCGA-US-A77J 
       14.14        18.67 

  ZNF207 MUTATED ZNF207 WILD-TYPE 
            0.13             0.03 
  ZNF207 MUTATED ZNF207 WILD-TYPE 
           19.82            49.38 
  ZNF207 MUTATED ZNF207 WILD-TYPE 
           15.35             7.43 
[1] "0.1 - 19.8 (15.3)" "0.0 - 49.4 (7.4)" 
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
"ZNF207 WILD-TYPE" "ZNF207 WILD-TYPE" "ZNF207 WILD-TYPE" "ZNF207 WILD-TYPE" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"ZNF207 WILD-TYPE" "ZNF207 WILD-TYPE"   "ZNF207 MUTATED" "ZNF207 WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
"ZNF207 WILD-TYPE" "ZNF207 WILD-TYPE" "ZNF207 WILD-TYPE" "ZNF207 WILD-TYPE" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"ZNF207 WILD-TYPE" "ZNF207 WILD-TYPE" "ZNF207 WILD-TYPE" "ZNF207 WILD-TYPE" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
"ZNF207 WILD-TYPE" "ZNF207 WILD-TYPE" "ZNF207 WILD-TYPE" "ZNF207 WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
"ZNF207 WILD-TYPE" "ZNF207 WILD-TYPE" "ZNF207 WILD-TYPE" "ZNF207 WILD-TYPE" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"ZNF207 WILD-TYPE" "ZNF207 WILD-TYPE" "ZNF207 WILD-TYPE" "ZNF207 WILD-TYPE" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
"ZNF207 WILD-TYPE" "ZNF207 WILD-TYPE" "ZNF207 WILD-TYPE" "ZNF207 WILD-TYPE" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
"ZNF207 WILD-TYPE"   "ZNF207 MUTATED" "ZNF207 WILD-TYPE" "ZNF207 WILD-TYPE" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
  "ZNF207 MUTATED" "ZNF207 WILD-TYPE" "ZNF207 WILD-TYPE" "ZNF207 WILD-TYPE" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
"ZNF207 WILD-TYPE" "ZNF207 WILD-TYPE"   "ZNF207 MUTATED"   "ZNF207 MUTATED" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
"ZNF207 WILD-TYPE" "ZNF207 WILD-TYPE" "ZNF207 WILD-TYPE" "ZNF207 WILD-TYPE" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
"ZNF207 WILD-TYPE" "ZNF207 WILD-TYPE" "ZNF207 WILD-TYPE"   "ZNF207 MUTATED" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
"ZNF207 WILD-TYPE"   "ZNF207 MUTATED" "ZNF207 WILD-TYPE" "ZNF207 WILD-TYPE" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"ZNF207 WILD-TYPE" "ZNF207 WILD-TYPE" "ZNF207 WILD-TYPE" "ZNF207 WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"ZNF207 WILD-TYPE" "ZNF207 WILD-TYPE" "ZNF207 WILD-TYPE" "ZNF207 WILD-TYPE" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
"ZNF207 WILD-TYPE" "ZNF207 WILD-TYPE" "ZNF207 WILD-TYPE" "ZNF207 WILD-TYPE" 
      TCGA-US-A77J 
"ZNF207 WILD-TYPE" 
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
"ZNF207 WILD-TYPE" "ZNF207 WILD-TYPE" "ZNF207 WILD-TYPE" "ZNF207 WILD-TYPE" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"ZNF207 WILD-TYPE" "ZNF207 WILD-TYPE"   "ZNF207 MUTATED" "ZNF207 WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
"ZNF207 WILD-TYPE" "ZNF207 WILD-TYPE" "ZNF207 WILD-TYPE" "ZNF207 WILD-TYPE" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"ZNF207 WILD-TYPE" "ZNF207 WILD-TYPE" "ZNF207 WILD-TYPE" "ZNF207 WILD-TYPE" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
"ZNF207 WILD-TYPE" "ZNF207 WILD-TYPE" "ZNF207 WILD-TYPE" "ZNF207 WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
"ZNF207 WILD-TYPE" "ZNF207 WILD-TYPE" "ZNF207 WILD-TYPE" "ZNF207 WILD-TYPE" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"ZNF207 WILD-TYPE" "ZNF207 WILD-TYPE" "ZNF207 WILD-TYPE" "ZNF207 WILD-TYPE" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
"ZNF207 WILD-TYPE" "ZNF207 WILD-TYPE" "ZNF207 WILD-TYPE" "ZNF207 WILD-TYPE" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
"ZNF207 WILD-TYPE"   "ZNF207 MUTATED" "ZNF207 WILD-TYPE" "ZNF207 WILD-TYPE" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
  "ZNF207 MUTATED" "ZNF207 WILD-TYPE" "ZNF207 WILD-TYPE" "ZNF207 WILD-TYPE" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
"ZNF207 WILD-TYPE" "ZNF207 WILD-TYPE"   "ZNF207 MUTATED"   "ZNF207 MUTATED" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
"ZNF207 WILD-TYPE" "ZNF207 WILD-TYPE" "ZNF207 WILD-TYPE" "ZNF207 WILD-TYPE" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
"ZNF207 WILD-TYPE" "ZNF207 WILD-TYPE" "ZNF207 WILD-TYPE"   "ZNF207 MUTATED" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
"ZNF207 WILD-TYPE"   "ZNF207 MUTATED" "ZNF207 WILD-TYPE" "ZNF207 WILD-TYPE" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"ZNF207 WILD-TYPE" "ZNF207 WILD-TYPE" "ZNF207 WILD-TYPE" "ZNF207 WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"ZNF207 WILD-TYPE" "ZNF207 WILD-TYPE" "ZNF207 WILD-TYPE" "ZNF207 WILD-TYPE" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
"ZNF207 WILD-TYPE" "ZNF207 WILD-TYPE" "ZNF207 WILD-TYPE" "ZNF207 WILD-TYPE" 
      TCGA-US-A77J 
"ZNF207 WILD-TYPE" 
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
"ZNF207 WILD-TYPE" "ZNF207 WILD-TYPE" "ZNF207 WILD-TYPE" "ZNF207 WILD-TYPE" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"ZNF207 WILD-TYPE" "ZNF207 WILD-TYPE"   "ZNF207 MUTATED" "ZNF207 WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
"ZNF207 WILD-TYPE" "ZNF207 WILD-TYPE" "ZNF207 WILD-TYPE" "ZNF207 WILD-TYPE" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"ZNF207 WILD-TYPE" "ZNF207 WILD-TYPE" "ZNF207 WILD-TYPE" "ZNF207 WILD-TYPE" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
"ZNF207 WILD-TYPE" "ZNF207 WILD-TYPE" "ZNF207 WILD-TYPE" "ZNF207 WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
"ZNF207 WILD-TYPE" "ZNF207 WILD-TYPE" "ZNF207 WILD-TYPE" "ZNF207 WILD-TYPE" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"ZNF207 WILD-TYPE" "ZNF207 WILD-TYPE" "ZNF207 WILD-TYPE" "ZNF207 WILD-TYPE" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
"ZNF207 WILD-TYPE" "ZNF207 WILD-TYPE" "ZNF207 WILD-TYPE" "ZNF207 WILD-TYPE" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
"ZNF207 WILD-TYPE"   "ZNF207 MUTATED" "ZNF207 WILD-TYPE" "ZNF207 WILD-TYPE" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
  "ZNF207 MUTATED" "ZNF207 WILD-TYPE" "ZNF207 WILD-TYPE" "ZNF207 WILD-TYPE" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
"ZNF207 WILD-TYPE" "ZNF207 WILD-TYPE"   "ZNF207 MUTATED"   "ZNF207 MUTATED" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
"ZNF207 WILD-TYPE" "ZNF207 WILD-TYPE" "ZNF207 WILD-TYPE" "ZNF207 WILD-TYPE" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
"ZNF207 WILD-TYPE" "ZNF207 WILD-TYPE" "ZNF207 WILD-TYPE"   "ZNF207 MUTATED" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
"ZNF207 WILD-TYPE"   "ZNF207 MUTATED" "ZNF207 WILD-TYPE" "ZNF207 WILD-TYPE" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"ZNF207 WILD-TYPE" "ZNF207 WILD-TYPE" "ZNF207 WILD-TYPE" "ZNF207 WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"ZNF207 WILD-TYPE" "ZNF207 WILD-TYPE" "ZNF207 WILD-TYPE" "ZNF207 WILD-TYPE" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
"ZNF207 WILD-TYPE" "ZNF207 WILD-TYPE" "ZNF207 WILD-TYPE" "ZNF207 WILD-TYPE" 
      TCGA-US-A77J 
"ZNF207 WILD-TYPE" 
[1] "hr=" "1.2"
D162V2, continuous
                  vv
clus               STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  ZNF207 MUTATED          1        0         0         6         0        0
  ZNF207 WILD-TYPE        0        4        11        45         2        3
D162V3, multiclass
                  vv
clus               T1+T2 T3+T4
  ZNF207 MUTATED       1     6
  ZNF207 WILD-TYPE     5    60
D162V4, multiclass
       clus
vv      ZNF207 MUTATED ZNF207 WILD-TYPE
  T1+T2              1                5
  T3+T4              6               60
D162V5, binary
                  cls
clus                0  1
  ZNF207 MUTATED    1  6
  ZNF207 WILD-TYPE 16 48
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ZNF207 MUTATED      1    6
  ZNF207 WILD-TYPE   16   48
   clus
vv  ZNF207 MUTATED ZNF207 WILD-TYPE
  0              1               16
  1              6               48
                  vv
clus               M0 M1 MX
  ZNF207 MUTATED    4  0  3
  ZNF207 WILD-TYPE 35  3 27
D162V6, multiclass
    clus
vv   ZNF207 MUTATED ZNF207 WILD-TYPE
  M0              4               35
  M1              0                3
  MX              3               27
D162V7, binary
                  cls
clus                0  1
  ZNF207 MUTATED    5  2
  ZNF207 WILD-TYPE 31 34
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ZNF207 MUTATED      5    2
  ZNF207 WILD-TYPE   31   34
        clus
vv       ZNF207 MUTATED ZNF207 WILD-TYPE
  FEMALE              5               31
  MALE                2               34
                  vv
clus               PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  ZNF207 MUTATED                                     6
  ZNF207 WILD-TYPE                                  59
                  vv
clus               PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  ZNF207 MUTATED                                       0
  ZNF207 WILD-TYPE                                     4
                  vv
clus               PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  ZNF207 MUTATED                                                  1
  ZNF207 WILD-TYPE                                                1
D162V8, multiclass
                                                  clus
vv                                                 ZNF207 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                           6
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                         0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA              1
                                                  clus
vv                                                 ZNF207 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                            59
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                           4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                1
D162V9, continuous
D162V10, continuous
                  vv
clus               R0 R1 RX
  ZNF207 MUTATED    5  2  0
  ZNF207 WILD-TYPE 37 22  2
D162V11, multiclass
    clus
vv   ZNF207 MUTATED ZNF207 WILD-TYPE
  R0              5               37
  R1              2               22
  RX              0                2
D162V12, continuous

Clustering(163) Variable = SLITRK5 MUTATION ANALYSIS
D163V1, survival
                   sevent
clus2                0  1
  SLITRK5 MUTATED    5  4
  SLITRK5 WILD-TYPE 35 25
  SLITRK5 MUTATED SLITRK5 WILD-TYPE 
                9                60 
  SLITRK5 MUTATED SLITRK5 WILD-TYPE 
                4                25 
$`SLITRK5 MUTATED`
TCGA-F2-A44G TCGA-HZ-8001 TCGA-HZ-8003 TCGA-HZ-A49G TCGA-IB-7651 TCGA-IB-7891 
        5.03         0.62         0.69         0.76        19.82        16.04 
TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-8127 
        3.85        15.98        17.16 

$`SLITRK5 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44H TCGA-FB-A4P5 
       10.98         9.70        11.84         7.10        19.27         0.13 
TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR TCGA-FZ-5920 
       11.93        12.66         2.47         0.03         5.46         2.01 
TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7289 
       36.20        20.81        12.89         7.66        13.02         7.89 
TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 
        0.92         0.66         0.13         0.26        12.13        11.87 
TCGA-HZ-7926 TCGA-HZ-8002 TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8636 
        0.26         0.79         3.95         0.92         0.53         0.16 
TCGA-HZ-8638 TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7645 
        2.99         0.95         6.38         1.51        11.41        49.38 
TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7886 
        4.77        21.90        15.35        15.65        27.98         4.04 
TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-8126 TCGA-IB-A5SO 
        3.62        43.79        15.81        19.66         0.56        10.82 
TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX 
        9.86         7.20        15.12         0.26         1.35         4.18 
TCGA-OE-A75W TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
        3.62         8.12        13.68        16.80        14.14        18.67 

  SLITRK5 MUTATED SLITRK5 WILD-TYPE 
             0.62              0.03 
  SLITRK5 MUTATED SLITRK5 WILD-TYPE 
            19.82             49.38 
  SLITRK5 MUTATED SLITRK5 WILD-TYPE 
            5.030             7.775 
[1] "0.6 - 19.8 (5.0)" "0.0 - 49.4 (7.8)"
       TCGA-F2-6879        TCGA-F2-6880        TCGA-F2-7273        TCGA-F2-7276 
"SLITRK5 WILD-TYPE" "SLITRK5 WILD-TYPE" "SLITRK5 WILD-TYPE" "SLITRK5 WILD-TYPE" 
       TCGA-F2-A44G        TCGA-F2-A44H        TCGA-FB-A4P5        TCGA-FB-A4P6 
  "SLITRK5 MUTATED" "SLITRK5 WILD-TYPE" "SLITRK5 WILD-TYPE" "SLITRK5 WILD-TYPE" 
       TCGA-FB-A545        TCGA-FB-A5VM        TCGA-FB-A78T        TCGA-FB-A7DR 
"SLITRK5 WILD-TYPE" "SLITRK5 WILD-TYPE" "SLITRK5 WILD-TYPE" "SLITRK5 WILD-TYPE" 
       TCGA-FZ-5920        TCGA-FZ-5922        TCGA-FZ-5923        TCGA-H6-8124 
"SLITRK5 WILD-TYPE" "SLITRK5 WILD-TYPE" "SLITRK5 WILD-TYPE" "SLITRK5 WILD-TYPE" 
       TCGA-H6-A45N        TCGA-H8-A6C1        TCGA-HZ-7289        TCGA-HZ-7918 
"SLITRK5 WILD-TYPE" "SLITRK5 WILD-TYPE" "SLITRK5 WILD-TYPE" "SLITRK5 WILD-TYPE" 
       TCGA-HZ-7919        TCGA-HZ-7922        TCGA-HZ-7923        TCGA-HZ-7924 
"SLITRK5 WILD-TYPE" "SLITRK5 WILD-TYPE" "SLITRK5 WILD-TYPE" "SLITRK5 WILD-TYPE" 
       TCGA-HZ-7925        TCGA-HZ-7926        TCGA-HZ-8001        TCGA-HZ-8002 
"SLITRK5 WILD-TYPE" "SLITRK5 WILD-TYPE"   "SLITRK5 MUTATED" "SLITRK5 WILD-TYPE" 
       TCGA-HZ-8003        TCGA-HZ-8005        TCGA-HZ-8315        TCGA-HZ-8317 
  "SLITRK5 MUTATED" "SLITRK5 WILD-TYPE" "SLITRK5 WILD-TYPE" "SLITRK5 WILD-TYPE" 
       TCGA-HZ-8636        TCGA-HZ-8638        TCGA-HZ-A49G        TCGA-HZ-A49H 
"SLITRK5 WILD-TYPE" "SLITRK5 WILD-TYPE"   "SLITRK5 MUTATED" "SLITRK5 WILD-TYPE" 
       TCGA-HZ-A4BH        TCGA-HZ-A4BK        TCGA-IB-7644        TCGA-IB-7645 
"SLITRK5 WILD-TYPE" "SLITRK5 WILD-TYPE" "SLITRK5 WILD-TYPE" "SLITRK5 WILD-TYPE" 
       TCGA-IB-7646        TCGA-IB-7647        TCGA-IB-7649        TCGA-IB-7651 
"SLITRK5 WILD-TYPE" "SLITRK5 WILD-TYPE" "SLITRK5 WILD-TYPE"   "SLITRK5 MUTATED" 
       TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-7886        TCGA-IB-7887 
"SLITRK5 WILD-TYPE" "SLITRK5 WILD-TYPE" "SLITRK5 WILD-TYPE" "SLITRK5 WILD-TYPE" 
       TCGA-IB-7888        TCGA-IB-7889        TCGA-IB-7890        TCGA-IB-7891 
"SLITRK5 WILD-TYPE" "SLITRK5 WILD-TYPE" "SLITRK5 WILD-TYPE"   "SLITRK5 MUTATED" 
       TCGA-IB-7893        TCGA-IB-7897        TCGA-IB-8126        TCGA-IB-8127 
  "SLITRK5 MUTATED"   "SLITRK5 MUTATED" "SLITRK5 WILD-TYPE"   "SLITRK5 MUTATED" 
       TCGA-IB-A5SO        TCGA-IB-A5SP        TCGA-IB-A5SQ        TCGA-IB-A5SS 
"SLITRK5 WILD-TYPE" "SLITRK5 WILD-TYPE" "SLITRK5 WILD-TYPE" "SLITRK5 WILD-TYPE" 
       TCGA-IB-A5ST        TCGA-IB-A6UG        TCGA-LB-A7SX        TCGA-OE-A75W 
"SLITRK5 WILD-TYPE" "SLITRK5 WILD-TYPE" "SLITRK5 WILD-TYPE" "SLITRK5 WILD-TYPE" 
       TCGA-PZ-A5RE        TCGA-Q3-A5QY        TCGA-US-A779        TCGA-US-A77E 
"SLITRK5 WILD-TYPE" "SLITRK5 WILD-TYPE" "SLITRK5 WILD-TYPE" "SLITRK5 WILD-TYPE" 
       TCGA-US-A77J 
"SLITRK5 WILD-TYPE" 
       TCGA-F2-6879        TCGA-F2-6880        TCGA-F2-7273        TCGA-F2-7276 
"SLITRK5 WILD-TYPE" "SLITRK5 WILD-TYPE" "SLITRK5 WILD-TYPE" "SLITRK5 WILD-TYPE" 
       TCGA-F2-A44G        TCGA-F2-A44H        TCGA-FB-A4P5        TCGA-FB-A4P6 
  "SLITRK5 MUTATED" "SLITRK5 WILD-TYPE" "SLITRK5 WILD-TYPE" "SLITRK5 WILD-TYPE" 
       TCGA-FB-A545        TCGA-FB-A5VM        TCGA-FB-A78T        TCGA-FB-A7DR 
"SLITRK5 WILD-TYPE" "SLITRK5 WILD-TYPE" "SLITRK5 WILD-TYPE" "SLITRK5 WILD-TYPE" 
       TCGA-FZ-5920        TCGA-FZ-5922        TCGA-FZ-5923        TCGA-H6-8124 
"SLITRK5 WILD-TYPE" "SLITRK5 WILD-TYPE" "SLITRK5 WILD-TYPE" "SLITRK5 WILD-TYPE" 
       TCGA-H6-A45N        TCGA-H8-A6C1        TCGA-HZ-7289        TCGA-HZ-7918 
"SLITRK5 WILD-TYPE" "SLITRK5 WILD-TYPE" "SLITRK5 WILD-TYPE" "SLITRK5 WILD-TYPE" 
       TCGA-HZ-7919        TCGA-HZ-7922        TCGA-HZ-7923        TCGA-HZ-7924 
"SLITRK5 WILD-TYPE" "SLITRK5 WILD-TYPE" "SLITRK5 WILD-TYPE" "SLITRK5 WILD-TYPE" 
       TCGA-HZ-7925        TCGA-HZ-7926        TCGA-HZ-8001        TCGA-HZ-8002 
"SLITRK5 WILD-TYPE" "SLITRK5 WILD-TYPE"   "SLITRK5 MUTATED" "SLITRK5 WILD-TYPE" 
       TCGA-HZ-8003        TCGA-HZ-8005        TCGA-HZ-8315        TCGA-HZ-8317 
  "SLITRK5 MUTATED" "SLITRK5 WILD-TYPE" "SLITRK5 WILD-TYPE" "SLITRK5 WILD-TYPE" 
       TCGA-HZ-8636        TCGA-HZ-8638        TCGA-HZ-A49G        TCGA-HZ-A49H 
"SLITRK5 WILD-TYPE" "SLITRK5 WILD-TYPE"   "SLITRK5 MUTATED" "SLITRK5 WILD-TYPE" 
       TCGA-HZ-A4BH        TCGA-HZ-A4BK        TCGA-IB-7644        TCGA-IB-7645 
"SLITRK5 WILD-TYPE" "SLITRK5 WILD-TYPE" "SLITRK5 WILD-TYPE" "SLITRK5 WILD-TYPE" 
       TCGA-IB-7646        TCGA-IB-7647        TCGA-IB-7649        TCGA-IB-7651 
"SLITRK5 WILD-TYPE" "SLITRK5 WILD-TYPE" "SLITRK5 WILD-TYPE"   "SLITRK5 MUTATED" 
       TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-7886        TCGA-IB-7887 
"SLITRK5 WILD-TYPE" "SLITRK5 WILD-TYPE" "SLITRK5 WILD-TYPE" "SLITRK5 WILD-TYPE" 
       TCGA-IB-7888        TCGA-IB-7889        TCGA-IB-7890        TCGA-IB-7891 
"SLITRK5 WILD-TYPE" "SLITRK5 WILD-TYPE" "SLITRK5 WILD-TYPE"   "SLITRK5 MUTATED" 
       TCGA-IB-7893        TCGA-IB-7897        TCGA-IB-8126        TCGA-IB-8127 
  "SLITRK5 MUTATED"   "SLITRK5 MUTATED" "SLITRK5 WILD-TYPE"   "SLITRK5 MUTATED" 
       TCGA-IB-A5SO        TCGA-IB-A5SP        TCGA-IB-A5SQ        TCGA-IB-A5SS 
"SLITRK5 WILD-TYPE" "SLITRK5 WILD-TYPE" "SLITRK5 WILD-TYPE" "SLITRK5 WILD-TYPE" 
       TCGA-IB-A5ST        TCGA-IB-A6UG        TCGA-LB-A7SX        TCGA-OE-A75W 
"SLITRK5 WILD-TYPE" "SLITRK5 WILD-TYPE" "SLITRK5 WILD-TYPE" "SLITRK5 WILD-TYPE" 
       TCGA-PZ-A5RE        TCGA-Q3-A5QY        TCGA-US-A779        TCGA-US-A77E 
"SLITRK5 WILD-TYPE" "SLITRK5 WILD-TYPE" "SLITRK5 WILD-TYPE" "SLITRK5 WILD-TYPE" 
       TCGA-US-A77J 
"SLITRK5 WILD-TYPE" 
       TCGA-F2-6879        TCGA-F2-6880        TCGA-F2-7273        TCGA-F2-7276 
"SLITRK5 WILD-TYPE" "SLITRK5 WILD-TYPE" "SLITRK5 WILD-TYPE" "SLITRK5 WILD-TYPE" 
       TCGA-F2-A44G        TCGA-F2-A44H        TCGA-FB-A4P5        TCGA-FB-A4P6 
  "SLITRK5 MUTATED" "SLITRK5 WILD-TYPE" "SLITRK5 WILD-TYPE" "SLITRK5 WILD-TYPE" 
       TCGA-FB-A545        TCGA-FB-A5VM        TCGA-FB-A78T        TCGA-FB-A7DR 
"SLITRK5 WILD-TYPE" "SLITRK5 WILD-TYPE" "SLITRK5 WILD-TYPE" "SLITRK5 WILD-TYPE" 
       TCGA-FZ-5920        TCGA-FZ-5922        TCGA-FZ-5923        TCGA-H6-8124 
"SLITRK5 WILD-TYPE" "SLITRK5 WILD-TYPE" "SLITRK5 WILD-TYPE" "SLITRK5 WILD-TYPE" 
       TCGA-H6-A45N        TCGA-H8-A6C1        TCGA-HZ-7289        TCGA-HZ-7918 
"SLITRK5 WILD-TYPE" "SLITRK5 WILD-TYPE" "SLITRK5 WILD-TYPE" "SLITRK5 WILD-TYPE" 
       TCGA-HZ-7919        TCGA-HZ-7922        TCGA-HZ-7923        TCGA-HZ-7924 
"SLITRK5 WILD-TYPE" "SLITRK5 WILD-TYPE" "SLITRK5 WILD-TYPE" "SLITRK5 WILD-TYPE" 
       TCGA-HZ-7925        TCGA-HZ-7926        TCGA-HZ-8001        TCGA-HZ-8002 
"SLITRK5 WILD-TYPE" "SLITRK5 WILD-TYPE"   "SLITRK5 MUTATED" "SLITRK5 WILD-TYPE" 
       TCGA-HZ-8003        TCGA-HZ-8005        TCGA-HZ-8315        TCGA-HZ-8317 
  "SLITRK5 MUTATED" "SLITRK5 WILD-TYPE" "SLITRK5 WILD-TYPE" "SLITRK5 WILD-TYPE" 
       TCGA-HZ-8636        TCGA-HZ-8638        TCGA-HZ-A49G        TCGA-HZ-A49H 
"SLITRK5 WILD-TYPE" "SLITRK5 WILD-TYPE"   "SLITRK5 MUTATED" "SLITRK5 WILD-TYPE" 
       TCGA-HZ-A4BH        TCGA-HZ-A4BK        TCGA-IB-7644        TCGA-IB-7645 
"SLITRK5 WILD-TYPE" "SLITRK5 WILD-TYPE" "SLITRK5 WILD-TYPE" "SLITRK5 WILD-TYPE" 
       TCGA-IB-7646        TCGA-IB-7647        TCGA-IB-7649        TCGA-IB-7651 
"SLITRK5 WILD-TYPE" "SLITRK5 WILD-TYPE" "SLITRK5 WILD-TYPE"   "SLITRK5 MUTATED" 
       TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-7886        TCGA-IB-7887 
"SLITRK5 WILD-TYPE" "SLITRK5 WILD-TYPE" "SLITRK5 WILD-TYPE" "SLITRK5 WILD-TYPE" 
       TCGA-IB-7888        TCGA-IB-7889        TCGA-IB-7890        TCGA-IB-7891 
"SLITRK5 WILD-TYPE" "SLITRK5 WILD-TYPE" "SLITRK5 WILD-TYPE"   "SLITRK5 MUTATED" 
       TCGA-IB-7893        TCGA-IB-7897        TCGA-IB-8126        TCGA-IB-8127 
  "SLITRK5 MUTATED"   "SLITRK5 MUTATED" "SLITRK5 WILD-TYPE"   "SLITRK5 MUTATED" 
       TCGA-IB-A5SO        TCGA-IB-A5SP        TCGA-IB-A5SQ        TCGA-IB-A5SS 
"SLITRK5 WILD-TYPE" "SLITRK5 WILD-TYPE" "SLITRK5 WILD-TYPE" "SLITRK5 WILD-TYPE" 
       TCGA-IB-A5ST        TCGA-IB-A6UG        TCGA-LB-A7SX        TCGA-OE-A75W 
"SLITRK5 WILD-TYPE" "SLITRK5 WILD-TYPE" "SLITRK5 WILD-TYPE" "SLITRK5 WILD-TYPE" 
       TCGA-PZ-A5RE        TCGA-Q3-A5QY        TCGA-US-A779        TCGA-US-A77E 
"SLITRK5 WILD-TYPE" "SLITRK5 WILD-TYPE" "SLITRK5 WILD-TYPE" "SLITRK5 WILD-TYPE" 
       TCGA-US-A77J 
"SLITRK5 WILD-TYPE" 
[1] "hr=" "1.1"
D163V2, continuous
                   vv
clus                STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  SLITRK5 MUTATED          0        0         1         7         1        0
  SLITRK5 WILD-TYPE        1        4        10        44         1        3
D163V3, multiclass
                   vv
clus                T1+T2 T3+T4
  SLITRK5 MUTATED       1     8
  SLITRK5 WILD-TYPE     5    58
D163V4, multiclass
       clus
vv      SLITRK5 MUTATED SLITRK5 WILD-TYPE
  T1+T2               1                 5
  T3+T4               8                58
D163V5, binary
                   cls
clus                 0  1
  SLITRK5 MUTATED    2  7
  SLITRK5 WILD-TYPE 15 47
[1] "tbl2"
                   cls
clus                [,1] [,2]
  SLITRK5 MUTATED      2    7
  SLITRK5 WILD-TYPE   15   47
   clus
vv  SLITRK5 MUTATED SLITRK5 WILD-TYPE
  0               2                15
  1               7                47
                   vv
clus                M0 M1 MX
  SLITRK5 MUTATED    6  0  3
  SLITRK5 WILD-TYPE 33  3 27
D163V6, multiclass
    clus
vv   SLITRK5 MUTATED SLITRK5 WILD-TYPE
  M0               6                33
  M1               0                 3
  MX               3                27
D163V7, binary
                   cls
clus                 0  1
  SLITRK5 MUTATED    5  4
  SLITRK5 WILD-TYPE 31 32
[1] "tbl2"
                   cls
clus                [,1] [,2]
  SLITRK5 MUTATED      5    4
  SLITRK5 WILD-TYPE   31   32
        clus
vv       SLITRK5 MUTATED SLITRK5 WILD-TYPE
  FEMALE               5                31
  MALE                 4                32
                   vv
clus                PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  SLITRK5 MUTATED                                     9
  SLITRK5 WILD-TYPE                                  56
                   vv
clus                PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  SLITRK5 MUTATED                                       0
  SLITRK5 WILD-TYPE                                     4
                   vv
clus                PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  SLITRK5 MUTATED                                                  0
  SLITRK5 WILD-TYPE                                                2
D163V8, multiclass
                                                  clus
vv                                                 SLITRK5 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                            9
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                          0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA               0
                                                  clus
vv                                                 SLITRK5 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                             56
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                            4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                 2
D163V9, continuous
D163V10, continuous
                   vv
clus                R0 R1 RX
  SLITRK5 MUTATED    6  3  0
  SLITRK5 WILD-TYPE 36 21  2
D163V11, multiclass
    clus
vv   SLITRK5 MUTATED SLITRK5 WILD-TYPE
  R0               6                36
  R1               3                21
  RX               0                 2
D163V12, continuous

Clustering(164) Variable = MMRN1 MUTATION ANALYSIS
D164V1, survival
                 sevent
clus2              0  1
  MMRN1 MUTATED    5  5
  MMRN1 WILD-TYPE 35 24
  MMRN1 MUTATED MMRN1 WILD-TYPE 
             10              59 
  MMRN1 MUTATED MMRN1 WILD-TYPE 
              5              24 
$`MMRN1 MUTATED`
TCGA-FZ-5920 TCGA-H6-8124 TCGA-HZ-8002 TCGA-HZ-8005 TCGA-HZ-8317 TCGA-HZ-A4BK 
        2.01        12.89         0.79         3.95         0.53         1.51 
TCGA-IB-7651 TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-7897 
       19.82        16.04         3.85        15.98 

$`MMRN1 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P5 TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR 
        0.13        11.93        12.66         2.47         0.03         5.46 
TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7289 TCGA-HZ-7918 
       36.20        20.81         7.66        13.02         7.89         0.92 
TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 
        0.66         0.13         0.26        12.13        11.87         0.26 
TCGA-HZ-8001 TCGA-HZ-8003 TCGA-HZ-8315 TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G 
        0.62         0.69         0.92         0.16         2.99         0.76 
TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 
        0.95         6.38        11.41        49.38         4.77        21.90 
TCGA-IB-7649 TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7888 
       15.35        15.65        27.98         4.04         3.62        43.79 
TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP 
       15.81        19.66         0.56        17.16        10.82         9.86 
TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W 
        7.20        15.12         0.26         1.35         4.18         3.62 
TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
        8.12        13.68        16.80        14.14        18.67 

  MMRN1 MUTATED MMRN1 WILD-TYPE 
           0.53            0.03 
  MMRN1 MUTATED MMRN1 WILD-TYPE 
          19.82           49.38 
  MMRN1 MUTATED MMRN1 WILD-TYPE 
           3.90            7.89 
[1] "0.5 - 19.8 (3.9)" "0.0 - 49.4 (7.9)"
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"MMRN1 WILD-TYPE" "MMRN1 WILD-TYPE" "MMRN1 WILD-TYPE" "MMRN1 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"MMRN1 WILD-TYPE" "MMRN1 WILD-TYPE" "MMRN1 WILD-TYPE" "MMRN1 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"MMRN1 WILD-TYPE" "MMRN1 WILD-TYPE" "MMRN1 WILD-TYPE" "MMRN1 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
  "MMRN1 MUTATED" "MMRN1 WILD-TYPE" "MMRN1 WILD-TYPE"   "MMRN1 MUTATED" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"MMRN1 WILD-TYPE" "MMRN1 WILD-TYPE" "MMRN1 WILD-TYPE" "MMRN1 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"MMRN1 WILD-TYPE" "MMRN1 WILD-TYPE" "MMRN1 WILD-TYPE" "MMRN1 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"MMRN1 WILD-TYPE" "MMRN1 WILD-TYPE" "MMRN1 WILD-TYPE"   "MMRN1 MUTATED" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"MMRN1 WILD-TYPE"   "MMRN1 MUTATED" "MMRN1 WILD-TYPE"   "MMRN1 MUTATED" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"MMRN1 WILD-TYPE" "MMRN1 WILD-TYPE" "MMRN1 WILD-TYPE" "MMRN1 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"MMRN1 WILD-TYPE"   "MMRN1 MUTATED" "MMRN1 WILD-TYPE" "MMRN1 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"MMRN1 WILD-TYPE" "MMRN1 WILD-TYPE" "MMRN1 WILD-TYPE"   "MMRN1 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"MMRN1 WILD-TYPE" "MMRN1 WILD-TYPE" "MMRN1 WILD-TYPE" "MMRN1 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"MMRN1 WILD-TYPE" "MMRN1 WILD-TYPE" "MMRN1 WILD-TYPE"   "MMRN1 MUTATED" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
  "MMRN1 MUTATED"   "MMRN1 MUTATED" "MMRN1 WILD-TYPE" "MMRN1 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"MMRN1 WILD-TYPE" "MMRN1 WILD-TYPE" "MMRN1 WILD-TYPE" "MMRN1 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"MMRN1 WILD-TYPE" "MMRN1 WILD-TYPE" "MMRN1 WILD-TYPE" "MMRN1 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"MMRN1 WILD-TYPE" "MMRN1 WILD-TYPE" "MMRN1 WILD-TYPE" "MMRN1 WILD-TYPE" 
     TCGA-US-A77J 
"MMRN1 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"MMRN1 WILD-TYPE" "MMRN1 WILD-TYPE" "MMRN1 WILD-TYPE" "MMRN1 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"MMRN1 WILD-TYPE" "MMRN1 WILD-TYPE" "MMRN1 WILD-TYPE" "MMRN1 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"MMRN1 WILD-TYPE" "MMRN1 WILD-TYPE" "MMRN1 WILD-TYPE" "MMRN1 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
  "MMRN1 MUTATED" "MMRN1 WILD-TYPE" "MMRN1 WILD-TYPE"   "MMRN1 MUTATED" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"MMRN1 WILD-TYPE" "MMRN1 WILD-TYPE" "MMRN1 WILD-TYPE" "MMRN1 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"MMRN1 WILD-TYPE" "MMRN1 WILD-TYPE" "MMRN1 WILD-TYPE" "MMRN1 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"MMRN1 WILD-TYPE" "MMRN1 WILD-TYPE" "MMRN1 WILD-TYPE"   "MMRN1 MUTATED" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"MMRN1 WILD-TYPE"   "MMRN1 MUTATED" "MMRN1 WILD-TYPE"   "MMRN1 MUTATED" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"MMRN1 WILD-TYPE" "MMRN1 WILD-TYPE" "MMRN1 WILD-TYPE" "MMRN1 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"MMRN1 WILD-TYPE"   "MMRN1 MUTATED" "MMRN1 WILD-TYPE" "MMRN1 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"MMRN1 WILD-TYPE" "MMRN1 WILD-TYPE" "MMRN1 WILD-TYPE"   "MMRN1 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"MMRN1 WILD-TYPE" "MMRN1 WILD-TYPE" "MMRN1 WILD-TYPE" "MMRN1 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"MMRN1 WILD-TYPE" "MMRN1 WILD-TYPE" "MMRN1 WILD-TYPE"   "MMRN1 MUTATED" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
  "MMRN1 MUTATED"   "MMRN1 MUTATED" "MMRN1 WILD-TYPE" "MMRN1 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"MMRN1 WILD-TYPE" "MMRN1 WILD-TYPE" "MMRN1 WILD-TYPE" "MMRN1 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"MMRN1 WILD-TYPE" "MMRN1 WILD-TYPE" "MMRN1 WILD-TYPE" "MMRN1 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"MMRN1 WILD-TYPE" "MMRN1 WILD-TYPE" "MMRN1 WILD-TYPE" "MMRN1 WILD-TYPE" 
     TCGA-US-A77J 
"MMRN1 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"MMRN1 WILD-TYPE" "MMRN1 WILD-TYPE" "MMRN1 WILD-TYPE" "MMRN1 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"MMRN1 WILD-TYPE" "MMRN1 WILD-TYPE" "MMRN1 WILD-TYPE" "MMRN1 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"MMRN1 WILD-TYPE" "MMRN1 WILD-TYPE" "MMRN1 WILD-TYPE" "MMRN1 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
  "MMRN1 MUTATED" "MMRN1 WILD-TYPE" "MMRN1 WILD-TYPE"   "MMRN1 MUTATED" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"MMRN1 WILD-TYPE" "MMRN1 WILD-TYPE" "MMRN1 WILD-TYPE" "MMRN1 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"MMRN1 WILD-TYPE" "MMRN1 WILD-TYPE" "MMRN1 WILD-TYPE" "MMRN1 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"MMRN1 WILD-TYPE" "MMRN1 WILD-TYPE" "MMRN1 WILD-TYPE"   "MMRN1 MUTATED" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"MMRN1 WILD-TYPE"   "MMRN1 MUTATED" "MMRN1 WILD-TYPE"   "MMRN1 MUTATED" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"MMRN1 WILD-TYPE" "MMRN1 WILD-TYPE" "MMRN1 WILD-TYPE" "MMRN1 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"MMRN1 WILD-TYPE"   "MMRN1 MUTATED" "MMRN1 WILD-TYPE" "MMRN1 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"MMRN1 WILD-TYPE" "MMRN1 WILD-TYPE" "MMRN1 WILD-TYPE"   "MMRN1 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"MMRN1 WILD-TYPE" "MMRN1 WILD-TYPE" "MMRN1 WILD-TYPE" "MMRN1 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"MMRN1 WILD-TYPE" "MMRN1 WILD-TYPE" "MMRN1 WILD-TYPE"   "MMRN1 MUTATED" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
  "MMRN1 MUTATED"   "MMRN1 MUTATED" "MMRN1 WILD-TYPE" "MMRN1 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"MMRN1 WILD-TYPE" "MMRN1 WILD-TYPE" "MMRN1 WILD-TYPE" "MMRN1 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"MMRN1 WILD-TYPE" "MMRN1 WILD-TYPE" "MMRN1 WILD-TYPE" "MMRN1 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"MMRN1 WILD-TYPE" "MMRN1 WILD-TYPE" "MMRN1 WILD-TYPE" "MMRN1 WILD-TYPE" 
     TCGA-US-A77J 
"MMRN1 WILD-TYPE" 
[1] "hr=" "1.7"
D164V2, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  MMRN1 MUTATED          0        0         1         9         0        0
  MMRN1 WILD-TYPE        1        4        10        42         2        3
D164V3, multiclass
                 vv
clus              T1+T2 T3+T4
  MMRN1 MUTATED       0    10
  MMRN1 WILD-TYPE     6    56
D164V4, multiclass
       clus
vv      MMRN1 MUTATED MMRN1 WILD-TYPE
  T1+T2             0               6
  T3+T4            10              56
D164V5, binary
                 cls
clus               0  1
  MMRN1 MUTATED    1  9
  MMRN1 WILD-TYPE 16 45
[1] "tbl2"
                 cls
clus              [,1] [,2]
  MMRN1 MUTATED      1    9
  MMRN1 WILD-TYPE   16   45
   clus
vv  MMRN1 MUTATED MMRN1 WILD-TYPE
  0             1              16
  1             9              45
                 vv
clus              M0 M1 MX
  MMRN1 MUTATED    6  0  4
  MMRN1 WILD-TYPE 33  3 26
D164V6, multiclass
    clus
vv   MMRN1 MUTATED MMRN1 WILD-TYPE
  M0             6              33
  M1             0               3
  MX             4              26
D164V7, binary
                 cls
clus               0  1
  MMRN1 MUTATED    4  6
  MMRN1 WILD-TYPE 32 30
[1] "tbl2"
                 cls
clus              [,1] [,2]
  MMRN1 MUTATED      4    6
  MMRN1 WILD-TYPE   32   30
        clus
vv       MMRN1 MUTATED MMRN1 WILD-TYPE
  FEMALE             4              32
  MALE               6              30
                 vv
clus              PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  MMRN1 MUTATED                                     9
  MMRN1 WILD-TYPE                                  56
                 vv
clus              PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  MMRN1 MUTATED                                       1
  MMRN1 WILD-TYPE                                     3
                 vv
clus              PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  MMRN1 MUTATED                                                  0
  MMRN1 WILD-TYPE                                                2
D164V8, multiclass
                                                  clus
vv                                                 MMRN1 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                          9
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                        1
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA             0
                                                  clus
vv                                                 MMRN1 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                           56
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                          3
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA               2
D164V9, continuous
D164V10, continuous
                 vv
clus              R0 R1 RX
  MMRN1 MUTATED    7  3  0
  MMRN1 WILD-TYPE 35 21  2
D164V11, multiclass
    clus
vv   MMRN1 MUTATED MMRN1 WILD-TYPE
  R0             7              35
  R1             3              21
  RX             0               2
D164V12, continuous

Clustering(165) Variable = MAP7D3 MUTATION ANALYSIS
D165V1, survival
                  sevent
clus2               0  1
  MAP7D3 MUTATED    5  6
  MAP7D3 WILD-TYPE 35 23
  MAP7D3 MUTATED MAP7D3 WILD-TYPE 
              11               58 
  MAP7D3 MUTATED MAP7D3 WILD-TYPE 
               6               23 
$`MAP7D3 MUTATED`
TCGA-H6-8124 TCGA-H6-A45N TCGA-HZ-7922 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-IB-7644 
       12.89         7.66         0.13         0.79         0.69        11.41 
TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7651 TCGA-OE-A75W TCGA-US-A77J 
       49.38         4.77        19.82         3.62        18.67 

$`MAP7D3 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P5 TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR 
        0.13        11.93        12.66         2.47         0.03         5.46 
TCGA-FZ-5920 TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H8-A6C1 TCGA-HZ-7289 TCGA-HZ-7918 
        2.01        36.20        20.81        13.02         7.89         0.92 
TCGA-HZ-7919 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8001 
        0.66         0.26        12.13        11.87         0.26         0.62 
TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G 
        3.95         0.92         0.53         0.16         2.99         0.76 
TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7652 
        0.95         6.38         1.51        21.90        15.35        15.65 
TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 
       27.98         4.04         3.62        43.79        15.81        19.66 
TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO 
       16.04         3.85        15.98         0.56        17.16        10.82 
TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX 
        9.86         7.20        15.12         0.26         1.35         4.18 
TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E 
        8.12        13.68        16.80        14.14 

  MAP7D3 MUTATED MAP7D3 WILD-TYPE 
            0.13             0.03 
  MAP7D3 MUTATED MAP7D3 WILD-TYPE 
           49.38            43.79 
  MAP7D3 MUTATED MAP7D3 WILD-TYPE 
           7.660            7.545 
[1] "0.1 - 49.4 (7.7)" "0.0 - 43.8 (7.5)"
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
"MAP7D3 WILD-TYPE" "MAP7D3 WILD-TYPE" "MAP7D3 WILD-TYPE" "MAP7D3 WILD-TYPE" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"MAP7D3 WILD-TYPE" "MAP7D3 WILD-TYPE" "MAP7D3 WILD-TYPE" "MAP7D3 WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
"MAP7D3 WILD-TYPE" "MAP7D3 WILD-TYPE" "MAP7D3 WILD-TYPE" "MAP7D3 WILD-TYPE" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"MAP7D3 WILD-TYPE" "MAP7D3 WILD-TYPE" "MAP7D3 WILD-TYPE"   "MAP7D3 MUTATED" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
  "MAP7D3 MUTATED" "MAP7D3 WILD-TYPE" "MAP7D3 WILD-TYPE" "MAP7D3 WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
"MAP7D3 WILD-TYPE"   "MAP7D3 MUTATED" "MAP7D3 WILD-TYPE" "MAP7D3 WILD-TYPE" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"MAP7D3 WILD-TYPE" "MAP7D3 WILD-TYPE" "MAP7D3 WILD-TYPE"   "MAP7D3 MUTATED" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
  "MAP7D3 MUTATED" "MAP7D3 WILD-TYPE" "MAP7D3 WILD-TYPE" "MAP7D3 WILD-TYPE" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
"MAP7D3 WILD-TYPE" "MAP7D3 WILD-TYPE" "MAP7D3 WILD-TYPE" "MAP7D3 WILD-TYPE" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
"MAP7D3 WILD-TYPE" "MAP7D3 WILD-TYPE"   "MAP7D3 MUTATED"   "MAP7D3 MUTATED" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
  "MAP7D3 MUTATED" "MAP7D3 WILD-TYPE" "MAP7D3 WILD-TYPE"   "MAP7D3 MUTATED" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
"MAP7D3 WILD-TYPE" "MAP7D3 WILD-TYPE" "MAP7D3 WILD-TYPE" "MAP7D3 WILD-TYPE" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
"MAP7D3 WILD-TYPE" "MAP7D3 WILD-TYPE" "MAP7D3 WILD-TYPE" "MAP7D3 WILD-TYPE" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
"MAP7D3 WILD-TYPE" "MAP7D3 WILD-TYPE" "MAP7D3 WILD-TYPE" "MAP7D3 WILD-TYPE" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"MAP7D3 WILD-TYPE" "MAP7D3 WILD-TYPE" "MAP7D3 WILD-TYPE" "MAP7D3 WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"MAP7D3 WILD-TYPE" "MAP7D3 WILD-TYPE" "MAP7D3 WILD-TYPE"   "MAP7D3 MUTATED" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
"MAP7D3 WILD-TYPE" "MAP7D3 WILD-TYPE" "MAP7D3 WILD-TYPE" "MAP7D3 WILD-TYPE" 
      TCGA-US-A77J 
  "MAP7D3 MUTATED" 
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
"MAP7D3 WILD-TYPE" "MAP7D3 WILD-TYPE" "MAP7D3 WILD-TYPE" "MAP7D3 WILD-TYPE" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"MAP7D3 WILD-TYPE" "MAP7D3 WILD-TYPE" "MAP7D3 WILD-TYPE" "MAP7D3 WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
"MAP7D3 WILD-TYPE" "MAP7D3 WILD-TYPE" "MAP7D3 WILD-TYPE" "MAP7D3 WILD-TYPE" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"MAP7D3 WILD-TYPE" "MAP7D3 WILD-TYPE" "MAP7D3 WILD-TYPE"   "MAP7D3 MUTATED" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
  "MAP7D3 MUTATED" "MAP7D3 WILD-TYPE" "MAP7D3 WILD-TYPE" "MAP7D3 WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
"MAP7D3 WILD-TYPE"   "MAP7D3 MUTATED" "MAP7D3 WILD-TYPE" "MAP7D3 WILD-TYPE" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"MAP7D3 WILD-TYPE" "MAP7D3 WILD-TYPE" "MAP7D3 WILD-TYPE"   "MAP7D3 MUTATED" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
  "MAP7D3 MUTATED" "MAP7D3 WILD-TYPE" "MAP7D3 WILD-TYPE" "MAP7D3 WILD-TYPE" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
"MAP7D3 WILD-TYPE" "MAP7D3 WILD-TYPE" "MAP7D3 WILD-TYPE" "MAP7D3 WILD-TYPE" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
"MAP7D3 WILD-TYPE" "MAP7D3 WILD-TYPE"   "MAP7D3 MUTATED"   "MAP7D3 MUTATED" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
  "MAP7D3 MUTATED" "MAP7D3 WILD-TYPE" "MAP7D3 WILD-TYPE"   "MAP7D3 MUTATED" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
"MAP7D3 WILD-TYPE" "MAP7D3 WILD-TYPE" "MAP7D3 WILD-TYPE" "MAP7D3 WILD-TYPE" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
"MAP7D3 WILD-TYPE" "MAP7D3 WILD-TYPE" "MAP7D3 WILD-TYPE" "MAP7D3 WILD-TYPE" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
"MAP7D3 WILD-TYPE" "MAP7D3 WILD-TYPE" "MAP7D3 WILD-TYPE" "MAP7D3 WILD-TYPE" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"MAP7D3 WILD-TYPE" "MAP7D3 WILD-TYPE" "MAP7D3 WILD-TYPE" "MAP7D3 WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"MAP7D3 WILD-TYPE" "MAP7D3 WILD-TYPE" "MAP7D3 WILD-TYPE"   "MAP7D3 MUTATED" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
"MAP7D3 WILD-TYPE" "MAP7D3 WILD-TYPE" "MAP7D3 WILD-TYPE" "MAP7D3 WILD-TYPE" 
      TCGA-US-A77J 
  "MAP7D3 MUTATED" 
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
"MAP7D3 WILD-TYPE" "MAP7D3 WILD-TYPE" "MAP7D3 WILD-TYPE" "MAP7D3 WILD-TYPE" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"MAP7D3 WILD-TYPE" "MAP7D3 WILD-TYPE" "MAP7D3 WILD-TYPE" "MAP7D3 WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
"MAP7D3 WILD-TYPE" "MAP7D3 WILD-TYPE" "MAP7D3 WILD-TYPE" "MAP7D3 WILD-TYPE" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"MAP7D3 WILD-TYPE" "MAP7D3 WILD-TYPE" "MAP7D3 WILD-TYPE"   "MAP7D3 MUTATED" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
  "MAP7D3 MUTATED" "MAP7D3 WILD-TYPE" "MAP7D3 WILD-TYPE" "MAP7D3 WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
"MAP7D3 WILD-TYPE"   "MAP7D3 MUTATED" "MAP7D3 WILD-TYPE" "MAP7D3 WILD-TYPE" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"MAP7D3 WILD-TYPE" "MAP7D3 WILD-TYPE" "MAP7D3 WILD-TYPE"   "MAP7D3 MUTATED" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
  "MAP7D3 MUTATED" "MAP7D3 WILD-TYPE" "MAP7D3 WILD-TYPE" "MAP7D3 WILD-TYPE" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
"MAP7D3 WILD-TYPE" "MAP7D3 WILD-TYPE" "MAP7D3 WILD-TYPE" "MAP7D3 WILD-TYPE" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
"MAP7D3 WILD-TYPE" "MAP7D3 WILD-TYPE"   "MAP7D3 MUTATED"   "MAP7D3 MUTATED" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
  "MAP7D3 MUTATED" "MAP7D3 WILD-TYPE" "MAP7D3 WILD-TYPE"   "MAP7D3 MUTATED" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
"MAP7D3 WILD-TYPE" "MAP7D3 WILD-TYPE" "MAP7D3 WILD-TYPE" "MAP7D3 WILD-TYPE" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
"MAP7D3 WILD-TYPE" "MAP7D3 WILD-TYPE" "MAP7D3 WILD-TYPE" "MAP7D3 WILD-TYPE" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
"MAP7D3 WILD-TYPE" "MAP7D3 WILD-TYPE" "MAP7D3 WILD-TYPE" "MAP7D3 WILD-TYPE" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"MAP7D3 WILD-TYPE" "MAP7D3 WILD-TYPE" "MAP7D3 WILD-TYPE" "MAP7D3 WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"MAP7D3 WILD-TYPE" "MAP7D3 WILD-TYPE" "MAP7D3 WILD-TYPE"   "MAP7D3 MUTATED" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
"MAP7D3 WILD-TYPE" "MAP7D3 WILD-TYPE" "MAP7D3 WILD-TYPE" "MAP7D3 WILD-TYPE" 
      TCGA-US-A77J 
  "MAP7D3 MUTATED" 
[1] "hr=" "1.2"
D165V2, continuous
                  vv
clus               STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  MAP7D3 MUTATED          0        0         1         9         0        1
  MAP7D3 WILD-TYPE        1        4        10        42         2        2
D165V3, multiclass
                  vv
clus               T1+T2 T3+T4
  MAP7D3 MUTATED       0    11
  MAP7D3 WILD-TYPE     6    55
D165V4, multiclass
       clus
vv      MAP7D3 MUTATED MAP7D3 WILD-TYPE
  T1+T2              0                6
  T3+T4             11               55
D165V5, binary
                  cls
clus                0  1
  MAP7D3 MUTATED    1 10
  MAP7D3 WILD-TYPE 16 44
[1] "tbl2"
                  cls
clus               [,1] [,2]
  MAP7D3 MUTATED      1   10
  MAP7D3 WILD-TYPE   16   44
   clus
vv  MAP7D3 MUTATED MAP7D3 WILD-TYPE
  0              1               16
  1             10               44
                  vv
clus               M0 M1 MX
  MAP7D3 MUTATED    5  1  5
  MAP7D3 WILD-TYPE 34  2 25
D165V6, multiclass
    clus
vv   MAP7D3 MUTATED MAP7D3 WILD-TYPE
  M0              5               34
  M1              1                2
  MX              5               25
D165V7, binary
                  cls
clus                0  1
  MAP7D3 MUTATED    8  3
  MAP7D3 WILD-TYPE 28 33
[1] "tbl2"
                  cls
clus               [,1] [,2]
  MAP7D3 MUTATED      8    3
  MAP7D3 WILD-TYPE   28   33
        clus
vv       MAP7D3 MUTATED MAP7D3 WILD-TYPE
  FEMALE              8               28
  MALE                3               33
                  vv
clus               PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  MAP7D3 MUTATED                                    10
  MAP7D3 WILD-TYPE                                  55
                  vv
clus               PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  MAP7D3 MUTATED                                       1
  MAP7D3 WILD-TYPE                                     3
                  vv
clus               PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  MAP7D3 MUTATED                                                  0
  MAP7D3 WILD-TYPE                                                2
D165V8, multiclass
                                                  clus
vv                                                 MAP7D3 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                          10
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                         1
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA              0
                                                  clus
vv                                                 MAP7D3 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                            55
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                           3
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                2
D165V9, continuous
D165V10, continuous
                  vv
clus               R0 R1 RX
  MAP7D3 MUTATED    8  2  0
  MAP7D3 WILD-TYPE 34 22  2
D165V11, multiclass
    clus
vv   MAP7D3 MUTATED MAP7D3 WILD-TYPE
  R0              8               34
  R1              2               22
  RX              0                2
D165V12, continuous

Clustering(166) Variable = BTNL8 MUTATION ANALYSIS
D166V1, survival
                 sevent
clus2              0  1
  BTNL8 MUTATED    8  3
  BTNL8 WILD-TYPE 32 26
  BTNL8 MUTATED BTNL8 WILD-TYPE 
             11              58 
  BTNL8 MUTATED BTNL8 WILD-TYPE 
              3              26 
$`BTNL8 MUTATED`
TCGA-FB-A78T TCGA-H6-A45N TCGA-HZ-8002 TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49H 
        0.03         7.66         0.79         0.16         2.99         0.95 
TCGA-IB-7645 TCGA-IB-7651 TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SP 
       49.38        19.82         0.56        17.16         9.86 

$`BTNL8 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P5 TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A7DR TCGA-FZ-5920 
        0.13        11.93        12.66         2.47         5.46         2.01 
TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 TCGA-H8-A6C1 TCGA-HZ-7289 TCGA-HZ-7918 
       36.20        20.81        12.89        13.02         7.89         0.92 
TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 
        0.66         0.13         0.26        12.13        11.87         0.26 
TCGA-HZ-8001 TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-A49G 
        0.62         0.69         3.95         0.92         0.53         0.76 
TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 
        6.38         1.51        11.41         4.77        21.90        15.35 
TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 
       15.65        27.98         4.04         3.62        43.79        15.81 
TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-A5SO TCGA-IB-A5SQ 
       19.66        16.04         3.85        15.98        10.82         7.20 
TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W TCGA-PZ-A5RE 
       15.12         0.26         1.35         4.18         3.62         8.12 
TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
       13.68        16.80        14.14        18.67 

  BTNL8 MUTATED BTNL8 WILD-TYPE 
           0.03            0.13 
  BTNL8 MUTATED BTNL8 WILD-TYPE 
          49.38           43.79 
  BTNL8 MUTATED BTNL8 WILD-TYPE 
          2.990           8.005 
[1] "0.0 - 49.4 (3.0)" "0.1 - 43.8 (8.0)"
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE"   "BTNL8 MUTATED" "BTNL8 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
  "BTNL8 MUTATED" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE"   "BTNL8 MUTATED" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
  "BTNL8 MUTATED"   "BTNL8 MUTATED" "BTNL8 WILD-TYPE"   "BTNL8 MUTATED" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE"   "BTNL8 MUTATED" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE"   "BTNL8 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE"   "BTNL8 MUTATED"   "BTNL8 MUTATED" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"BTNL8 WILD-TYPE"   "BTNL8 MUTATED" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-US-A77J 
"BTNL8 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE"   "BTNL8 MUTATED" "BTNL8 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
  "BTNL8 MUTATED" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE"   "BTNL8 MUTATED" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
  "BTNL8 MUTATED"   "BTNL8 MUTATED" "BTNL8 WILD-TYPE"   "BTNL8 MUTATED" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE"   "BTNL8 MUTATED" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE"   "BTNL8 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE"   "BTNL8 MUTATED"   "BTNL8 MUTATED" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"BTNL8 WILD-TYPE"   "BTNL8 MUTATED" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-US-A77J 
"BTNL8 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE"   "BTNL8 MUTATED" "BTNL8 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
  "BTNL8 MUTATED" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE"   "BTNL8 MUTATED" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
  "BTNL8 MUTATED"   "BTNL8 MUTATED" "BTNL8 WILD-TYPE"   "BTNL8 MUTATED" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE"   "BTNL8 MUTATED" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE"   "BTNL8 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE"   "BTNL8 MUTATED"   "BTNL8 MUTATED" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"BTNL8 WILD-TYPE"   "BTNL8 MUTATED" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-US-A77J 
"BTNL8 WILD-TYPE" 
[1] "hr=" "2.9"
D166V2, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  BTNL8 MUTATED          1        0         1         7         1        1
  BTNL8 WILD-TYPE        0        4        10        44         1        2
D166V3, multiclass
                 vv
clus              T1+T2 T3+T4
  BTNL8 MUTATED       1    10
  BTNL8 WILD-TYPE     5    56
D166V4, multiclass
       clus
vv      BTNL8 MUTATED BTNL8 WILD-TYPE
  T1+T2             1               5
  T3+T4            10              56
D166V5, binary
                 cls
clus               0  1
  BTNL8 MUTATED    3  8
  BTNL8 WILD-TYPE 14 46
[1] "tbl2"
                 cls
clus              [,1] [,2]
  BTNL8 MUTATED      3    8
  BTNL8 WILD-TYPE   14   46
   clus
vv  BTNL8 MUTATED BTNL8 WILD-TYPE
  0             3              14
  1             8              46
                 vv
clus              M0 M1 MX
  BTNL8 MUTATED    6  1  4
  BTNL8 WILD-TYPE 33  2 26
D166V6, multiclass
    clus
vv   BTNL8 MUTATED BTNL8 WILD-TYPE
  M0             6              33
  M1             1               2
  MX             4              26
D166V7, binary
                 cls
clus               0  1
  BTNL8 MUTATED    8  3
  BTNL8 WILD-TYPE 28 33
[1] "tbl2"
                 cls
clus              [,1] [,2]
  BTNL8 MUTATED      8    3
  BTNL8 WILD-TYPE   28   33
        clus
vv       BTNL8 MUTATED BTNL8 WILD-TYPE
  FEMALE             8              28
  MALE               3              33
                 vv
clus              PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  BTNL8 MUTATED                                     9
  BTNL8 WILD-TYPE                                  56
                 vv
clus              PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  BTNL8 MUTATED                                       1
  BTNL8 WILD-TYPE                                     3
                 vv
clus              PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  BTNL8 MUTATED                                                  1
  BTNL8 WILD-TYPE                                                1
D166V8, multiclass
                                                  clus
vv                                                 BTNL8 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                          9
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                        1
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA             1
                                                  clus
vv                                                 BTNL8 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                           56
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                          3
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA               1
D166V9, continuous
D166V10, continuous
                 vv
clus              R0 R1 RX
  BTNL8 MUTATED    6  4  0
  BTNL8 WILD-TYPE 36 20  2
D166V11, multiclass
    clus
vv   BTNL8 MUTATED BTNL8 WILD-TYPE
  R0             6              36
  R1             4              20
  RX             0               2
D166V12, continuous

Clustering(167) Variable = SERTAD1 MUTATION ANALYSIS
D167V1, survival
                   sevent
clus2                0  1
  SERTAD1 MUTATED    4  3
  SERTAD1 WILD-TYPE 36 26
  SERTAD1 MUTATED SERTAD1 WILD-TYPE 
                7                62 
  SERTAD1 MUTATED SERTAD1 WILD-TYPE 
                3                26 
$`SERTAD1 MUTATED`
TCGA-F2-A44H TCGA-HZ-7919 TCGA-HZ-7923 TCGA-IB-7651 TCGA-IB-7893 TCGA-IB-7897 
       19.27         0.66         0.26        19.82         3.85        15.98 
TCGA-IB-A5SP 
        9.86 

$`SERTAD1 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-FB-A4P5 
       10.98         9.70        11.84         7.10         5.03         0.13 
TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR TCGA-FZ-5920 
       11.93        12.66         2.47         0.03         5.46         2.01 
TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7289 
       36.20        20.81        12.89         7.66        13.02         7.89 
TCGA-HZ-7918 TCGA-HZ-7922 TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8001 
        0.92         0.13        12.13        11.87         0.26         0.62 
TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8636 
        0.79         0.69         3.95         0.92         0.53         0.16 
TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 
        2.99         0.76         0.95         6.38         1.51        11.41 
TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7652 TCGA-IB-7885 
       49.38         4.77        21.90        15.35        15.65        27.98 
TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 
        4.04         3.62        43.79        15.81        19.66        16.04 
TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST 
        0.56        17.16        10.82         7.20        15.12         0.26 
TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 
        1.35         4.18         3.62         8.12        13.68        16.80 
TCGA-US-A77E TCGA-US-A77J 
       14.14        18.67 

  SERTAD1 MUTATED SERTAD1 WILD-TYPE 
             0.26              0.03 
  SERTAD1 MUTATED SERTAD1 WILD-TYPE 
            19.82             49.38 
  SERTAD1 MUTATED SERTAD1 WILD-TYPE 
             9.86              7.43 
[1] "0.3 - 19.8 (9.9)" "0.0 - 49.4 (7.4)"
       TCGA-F2-6879        TCGA-F2-6880        TCGA-F2-7273        TCGA-F2-7276 
"SERTAD1 WILD-TYPE" "SERTAD1 WILD-TYPE" "SERTAD1 WILD-TYPE" "SERTAD1 WILD-TYPE" 
       TCGA-F2-A44G        TCGA-F2-A44H        TCGA-FB-A4P5        TCGA-FB-A4P6 
"SERTAD1 WILD-TYPE"   "SERTAD1 MUTATED" "SERTAD1 WILD-TYPE" "SERTAD1 WILD-TYPE" 
       TCGA-FB-A545        TCGA-FB-A5VM        TCGA-FB-A78T        TCGA-FB-A7DR 
"SERTAD1 WILD-TYPE" "SERTAD1 WILD-TYPE" "SERTAD1 WILD-TYPE" "SERTAD1 WILD-TYPE" 
       TCGA-FZ-5920        TCGA-FZ-5922        TCGA-FZ-5923        TCGA-H6-8124 
"SERTAD1 WILD-TYPE" "SERTAD1 WILD-TYPE" "SERTAD1 WILD-TYPE" "SERTAD1 WILD-TYPE" 
       TCGA-H6-A45N        TCGA-H8-A6C1        TCGA-HZ-7289        TCGA-HZ-7918 
"SERTAD1 WILD-TYPE" "SERTAD1 WILD-TYPE" "SERTAD1 WILD-TYPE" "SERTAD1 WILD-TYPE" 
       TCGA-HZ-7919        TCGA-HZ-7922        TCGA-HZ-7923        TCGA-HZ-7924 
  "SERTAD1 MUTATED" "SERTAD1 WILD-TYPE"   "SERTAD1 MUTATED" "SERTAD1 WILD-TYPE" 
       TCGA-HZ-7925        TCGA-HZ-7926        TCGA-HZ-8001        TCGA-HZ-8002 
"SERTAD1 WILD-TYPE" "SERTAD1 WILD-TYPE" "SERTAD1 WILD-TYPE" "SERTAD1 WILD-TYPE" 
       TCGA-HZ-8003        TCGA-HZ-8005        TCGA-HZ-8315        TCGA-HZ-8317 
"SERTAD1 WILD-TYPE" "SERTAD1 WILD-TYPE" "SERTAD1 WILD-TYPE" "SERTAD1 WILD-TYPE" 
       TCGA-HZ-8636        TCGA-HZ-8638        TCGA-HZ-A49G        TCGA-HZ-A49H 
"SERTAD1 WILD-TYPE" "SERTAD1 WILD-TYPE" "SERTAD1 WILD-TYPE" "SERTAD1 WILD-TYPE" 
       TCGA-HZ-A4BH        TCGA-HZ-A4BK        TCGA-IB-7644        TCGA-IB-7645 
"SERTAD1 WILD-TYPE" "SERTAD1 WILD-TYPE" "SERTAD1 WILD-TYPE" "SERTAD1 WILD-TYPE" 
       TCGA-IB-7646        TCGA-IB-7647        TCGA-IB-7649        TCGA-IB-7651 
"SERTAD1 WILD-TYPE" "SERTAD1 WILD-TYPE" "SERTAD1 WILD-TYPE"   "SERTAD1 MUTATED" 
       TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-7886        TCGA-IB-7887 
"SERTAD1 WILD-TYPE" "SERTAD1 WILD-TYPE" "SERTAD1 WILD-TYPE" "SERTAD1 WILD-TYPE" 
       TCGA-IB-7888        TCGA-IB-7889        TCGA-IB-7890        TCGA-IB-7891 
"SERTAD1 WILD-TYPE" "SERTAD1 WILD-TYPE" "SERTAD1 WILD-TYPE" "SERTAD1 WILD-TYPE" 
       TCGA-IB-7893        TCGA-IB-7897        TCGA-IB-8126        TCGA-IB-8127 
  "SERTAD1 MUTATED"   "SERTAD1 MUTATED" "SERTAD1 WILD-TYPE" "SERTAD1 WILD-TYPE" 
       TCGA-IB-A5SO        TCGA-IB-A5SP        TCGA-IB-A5SQ        TCGA-IB-A5SS 
"SERTAD1 WILD-TYPE"   "SERTAD1 MUTATED" "SERTAD1 WILD-TYPE" "SERTAD1 WILD-TYPE" 
       TCGA-IB-A5ST        TCGA-IB-A6UG        TCGA-LB-A7SX        TCGA-OE-A75W 
"SERTAD1 WILD-TYPE" "SERTAD1 WILD-TYPE" "SERTAD1 WILD-TYPE" "SERTAD1 WILD-TYPE" 
       TCGA-PZ-A5RE        TCGA-Q3-A5QY        TCGA-US-A779        TCGA-US-A77E 
"SERTAD1 WILD-TYPE" "SERTAD1 WILD-TYPE" "SERTAD1 WILD-TYPE" "SERTAD1 WILD-TYPE" 
       TCGA-US-A77J 
"SERTAD1 WILD-TYPE" 
       TCGA-F2-6879        TCGA-F2-6880        TCGA-F2-7273        TCGA-F2-7276 
"SERTAD1 WILD-TYPE" "SERTAD1 WILD-TYPE" "SERTAD1 WILD-TYPE" "SERTAD1 WILD-TYPE" 
       TCGA-F2-A44G        TCGA-F2-A44H        TCGA-FB-A4P5        TCGA-FB-A4P6 
"SERTAD1 WILD-TYPE"   "SERTAD1 MUTATED" "SERTAD1 WILD-TYPE" "SERTAD1 WILD-TYPE" 
       TCGA-FB-A545        TCGA-FB-A5VM        TCGA-FB-A78T        TCGA-FB-A7DR 
"SERTAD1 WILD-TYPE" "SERTAD1 WILD-TYPE" "SERTAD1 WILD-TYPE" "SERTAD1 WILD-TYPE" 
       TCGA-FZ-5920        TCGA-FZ-5922        TCGA-FZ-5923        TCGA-H6-8124 
"SERTAD1 WILD-TYPE" "SERTAD1 WILD-TYPE" "SERTAD1 WILD-TYPE" "SERTAD1 WILD-TYPE" 
       TCGA-H6-A45N        TCGA-H8-A6C1        TCGA-HZ-7289        TCGA-HZ-7918 
"SERTAD1 WILD-TYPE" "SERTAD1 WILD-TYPE" "SERTAD1 WILD-TYPE" "SERTAD1 WILD-TYPE" 
       TCGA-HZ-7919        TCGA-HZ-7922        TCGA-HZ-7923        TCGA-HZ-7924 
  "SERTAD1 MUTATED" "SERTAD1 WILD-TYPE"   "SERTAD1 MUTATED" "SERTAD1 WILD-TYPE" 
       TCGA-HZ-7925        TCGA-HZ-7926        TCGA-HZ-8001        TCGA-HZ-8002 
"SERTAD1 WILD-TYPE" "SERTAD1 WILD-TYPE" "SERTAD1 WILD-TYPE" "SERTAD1 WILD-TYPE" 
       TCGA-HZ-8003        TCGA-HZ-8005        TCGA-HZ-8315        TCGA-HZ-8317 
"SERTAD1 WILD-TYPE" "SERTAD1 WILD-TYPE" "SERTAD1 WILD-TYPE" "SERTAD1 WILD-TYPE" 
       TCGA-HZ-8636        TCGA-HZ-8638        TCGA-HZ-A49G        TCGA-HZ-A49H 
"SERTAD1 WILD-TYPE" "SERTAD1 WILD-TYPE" "SERTAD1 WILD-TYPE" "SERTAD1 WILD-TYPE" 
       TCGA-HZ-A4BH        TCGA-HZ-A4BK        TCGA-IB-7644        TCGA-IB-7645 
"SERTAD1 WILD-TYPE" "SERTAD1 WILD-TYPE" "SERTAD1 WILD-TYPE" "SERTAD1 WILD-TYPE" 
       TCGA-IB-7646        TCGA-IB-7647        TCGA-IB-7649        TCGA-IB-7651 
"SERTAD1 WILD-TYPE" "SERTAD1 WILD-TYPE" "SERTAD1 WILD-TYPE"   "SERTAD1 MUTATED" 
       TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-7886        TCGA-IB-7887 
"SERTAD1 WILD-TYPE" "SERTAD1 WILD-TYPE" "SERTAD1 WILD-TYPE" "SERTAD1 WILD-TYPE" 
       TCGA-IB-7888        TCGA-IB-7889        TCGA-IB-7890        TCGA-IB-7891 
"SERTAD1 WILD-TYPE" "SERTAD1 WILD-TYPE" "SERTAD1 WILD-TYPE" "SERTAD1 WILD-TYPE" 
       TCGA-IB-7893        TCGA-IB-7897        TCGA-IB-8126        TCGA-IB-8127 
  "SERTAD1 MUTATED"   "SERTAD1 MUTATED" "SERTAD1 WILD-TYPE" "SERTAD1 WILD-TYPE" 
       TCGA-IB-A5SO        TCGA-IB-A5SP        TCGA-IB-A5SQ        TCGA-IB-A5SS 
"SERTAD1 WILD-TYPE"   "SERTAD1 MUTATED" "SERTAD1 WILD-TYPE" "SERTAD1 WILD-TYPE" 
       TCGA-IB-A5ST        TCGA-IB-A6UG        TCGA-LB-A7SX        TCGA-OE-A75W 
"SERTAD1 WILD-TYPE" "SERTAD1 WILD-TYPE" "SERTAD1 WILD-TYPE" "SERTAD1 WILD-TYPE" 
       TCGA-PZ-A5RE        TCGA-Q3-A5QY        TCGA-US-A779        TCGA-US-A77E 
"SERTAD1 WILD-TYPE" "SERTAD1 WILD-TYPE" "SERTAD1 WILD-TYPE" "SERTAD1 WILD-TYPE" 
       TCGA-US-A77J 
"SERTAD1 WILD-TYPE" 
       TCGA-F2-6879        TCGA-F2-6880        TCGA-F2-7273        TCGA-F2-7276 
"SERTAD1 WILD-TYPE" "SERTAD1 WILD-TYPE" "SERTAD1 WILD-TYPE" "SERTAD1 WILD-TYPE" 
       TCGA-F2-A44G        TCGA-F2-A44H        TCGA-FB-A4P5        TCGA-FB-A4P6 
"SERTAD1 WILD-TYPE"   "SERTAD1 MUTATED" "SERTAD1 WILD-TYPE" "SERTAD1 WILD-TYPE" 
       TCGA-FB-A545        TCGA-FB-A5VM        TCGA-FB-A78T        TCGA-FB-A7DR 
"SERTAD1 WILD-TYPE" "SERTAD1 WILD-TYPE" "SERTAD1 WILD-TYPE" "SERTAD1 WILD-TYPE" 
       TCGA-FZ-5920        TCGA-FZ-5922        TCGA-FZ-5923        TCGA-H6-8124 
"SERTAD1 WILD-TYPE" "SERTAD1 WILD-TYPE" "SERTAD1 WILD-TYPE" "SERTAD1 WILD-TYPE" 
       TCGA-H6-A45N        TCGA-H8-A6C1        TCGA-HZ-7289        TCGA-HZ-7918 
"SERTAD1 WILD-TYPE" "SERTAD1 WILD-TYPE" "SERTAD1 WILD-TYPE" "SERTAD1 WILD-TYPE" 
       TCGA-HZ-7919        TCGA-HZ-7922        TCGA-HZ-7923        TCGA-HZ-7924 
  "SERTAD1 MUTATED" "SERTAD1 WILD-TYPE"   "SERTAD1 MUTATED" "SERTAD1 WILD-TYPE" 
       TCGA-HZ-7925        TCGA-HZ-7926        TCGA-HZ-8001        TCGA-HZ-8002 
"SERTAD1 WILD-TYPE" "SERTAD1 WILD-TYPE" "SERTAD1 WILD-TYPE" "SERTAD1 WILD-TYPE" 
       TCGA-HZ-8003        TCGA-HZ-8005        TCGA-HZ-8315        TCGA-HZ-8317 
"SERTAD1 WILD-TYPE" "SERTAD1 WILD-TYPE" "SERTAD1 WILD-TYPE" "SERTAD1 WILD-TYPE" 
       TCGA-HZ-8636        TCGA-HZ-8638        TCGA-HZ-A49G        TCGA-HZ-A49H 
"SERTAD1 WILD-TYPE" "SERTAD1 WILD-TYPE" "SERTAD1 WILD-TYPE" "SERTAD1 WILD-TYPE" 
       TCGA-HZ-A4BH        TCGA-HZ-A4BK        TCGA-IB-7644        TCGA-IB-7645 
"SERTAD1 WILD-TYPE" "SERTAD1 WILD-TYPE" "SERTAD1 WILD-TYPE" "SERTAD1 WILD-TYPE" 
       TCGA-IB-7646        TCGA-IB-7647        TCGA-IB-7649        TCGA-IB-7651 
"SERTAD1 WILD-TYPE" "SERTAD1 WILD-TYPE" "SERTAD1 WILD-TYPE"   "SERTAD1 MUTATED" 
       TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-7886        TCGA-IB-7887 
"SERTAD1 WILD-TYPE" "SERTAD1 WILD-TYPE" "SERTAD1 WILD-TYPE" "SERTAD1 WILD-TYPE" 
       TCGA-IB-7888        TCGA-IB-7889        TCGA-IB-7890        TCGA-IB-7891 
"SERTAD1 WILD-TYPE" "SERTAD1 WILD-TYPE" "SERTAD1 WILD-TYPE" "SERTAD1 WILD-TYPE" 
       TCGA-IB-7893        TCGA-IB-7897        TCGA-IB-8126        TCGA-IB-8127 
  "SERTAD1 MUTATED"   "SERTAD1 MUTATED" "SERTAD1 WILD-TYPE" "SERTAD1 WILD-TYPE" 
       TCGA-IB-A5SO        TCGA-IB-A5SP        TCGA-IB-A5SQ        TCGA-IB-A5SS 
"SERTAD1 WILD-TYPE"   "SERTAD1 MUTATED" "SERTAD1 WILD-TYPE" "SERTAD1 WILD-TYPE" 
       TCGA-IB-A5ST        TCGA-IB-A6UG        TCGA-LB-A7SX        TCGA-OE-A75W 
"SERTAD1 WILD-TYPE" "SERTAD1 WILD-TYPE" "SERTAD1 WILD-TYPE" "SERTAD1 WILD-TYPE" 
       TCGA-PZ-A5RE        TCGA-Q3-A5QY        TCGA-US-A779        TCGA-US-A77E 
"SERTAD1 WILD-TYPE" "SERTAD1 WILD-TYPE" "SERTAD1 WILD-TYPE" "SERTAD1 WILD-TYPE" 
       TCGA-US-A77J 
"SERTAD1 WILD-TYPE" 
[1] "hr=" "1"  
D167V2, continuous
                   vv
clus                STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  SERTAD1 MUTATED          0        0         4         3         0        0
  SERTAD1 WILD-TYPE        1        4         7        48         2        3
D167V3, multiclass
                   vv
clus                T1+T2 T3+T4
  SERTAD1 MUTATED       0     7
  SERTAD1 WILD-TYPE     6    59
D167V4, multiclass
       clus
vv      SERTAD1 MUTATED SERTAD1 WILD-TYPE
  T1+T2               0                 6
  T3+T4               7                59
D167V5, binary
                   cls
clus                 0  1
  SERTAD1 MUTATED    4  3
  SERTAD1 WILD-TYPE 13 51
[1] "tbl2"
                   cls
clus                [,1] [,2]
  SERTAD1 MUTATED      4    3
  SERTAD1 WILD-TYPE   13   51
   clus
vv  SERTAD1 MUTATED SERTAD1 WILD-TYPE
  0               4                13
  1               3                51
                   vv
clus                M0 M1 MX
  SERTAD1 MUTATED    6  0  1
  SERTAD1 WILD-TYPE 33  3 29
D167V6, multiclass
    clus
vv   SERTAD1 MUTATED SERTAD1 WILD-TYPE
  M0               6                33
  M1               0                 3
  MX               1                29
D167V7, binary
                   cls
clus                 0  1
  SERTAD1 MUTATED    3  4
  SERTAD1 WILD-TYPE 33 32
[1] "tbl2"
                   cls
clus                [,1] [,2]
  SERTAD1 MUTATED      3    4
  SERTAD1 WILD-TYPE   33   32
        clus
vv       SERTAD1 MUTATED SERTAD1 WILD-TYPE
  FEMALE               3                33
  MALE                 4                32
                   vv
clus                PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  SERTAD1 MUTATED                                     7
  SERTAD1 WILD-TYPE                                  58
                   vv
clus                PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  SERTAD1 MUTATED                                       0
  SERTAD1 WILD-TYPE                                     4
                   vv
clus                PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  SERTAD1 MUTATED                                                  0
  SERTAD1 WILD-TYPE                                                2
D167V8, multiclass
                                                  clus
vv                                                 SERTAD1 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                            7
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                          0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA               0
                                                  clus
vv                                                 SERTAD1 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                             58
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                            4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                 2
D167V9, continuous
[1] "Remove cluster labels:" "SERTAD1 MUTATED"       
clus
  SERTAD1 MUTATED SERTAD1 WILD-TYPE 
                1                21 
       TCGA-F2-6880        TCGA-FB-A4P5        TCGA-FB-A4P6        TCGA-FB-A5VM 
"SERTAD1 WILD-TYPE" "SERTAD1 WILD-TYPE" "SERTAD1 WILD-TYPE" "SERTAD1 WILD-TYPE" 
       TCGA-FB-A78T        TCGA-FB-A7DR        TCGA-H6-8124        TCGA-H6-A45N 
"SERTAD1 WILD-TYPE" "SERTAD1 WILD-TYPE" "SERTAD1 WILD-TYPE" "SERTAD1 WILD-TYPE" 
       TCGA-H8-A6C1        TCGA-IB-7644        TCGA-IB-7649        TCGA-IB-7885 
"SERTAD1 WILD-TYPE" "SERTAD1 WILD-TYPE" "SERTAD1 WILD-TYPE" "SERTAD1 WILD-TYPE" 
       TCGA-IB-7886        TCGA-IB-7887        TCGA-IB-7891        TCGA-IB-8126 
"SERTAD1 WILD-TYPE" "SERTAD1 WILD-TYPE" "SERTAD1 WILD-TYPE" "SERTAD1 WILD-TYPE" 
       TCGA-IB-8127        TCGA-IB-A5SS        TCGA-IB-A6UG        TCGA-LB-A7SX 
"SERTAD1 WILD-TYPE" "SERTAD1 WILD-TYPE" "SERTAD1 WILD-TYPE" "SERTAD1 WILD-TYPE" 
       TCGA-OE-A75W 
"SERTAD1 WILD-TYPE" 
D167V10, continuous
[1] "Remove cluster labels:" "SERTAD1 MUTATED"       
clus
  SERTAD1 MUTATED SERTAD1 WILD-TYPE 
                1                18 
       TCGA-FB-A4P5        TCGA-FB-A4P6        TCGA-FB-A5VM        TCGA-FB-A78T 
"SERTAD1 WILD-TYPE" "SERTAD1 WILD-TYPE" "SERTAD1 WILD-TYPE" "SERTAD1 WILD-TYPE" 
       TCGA-FB-A7DR        TCGA-H6-8124        TCGA-H8-A6C1        TCGA-IB-7644 
"SERTAD1 WILD-TYPE" "SERTAD1 WILD-TYPE" "SERTAD1 WILD-TYPE" "SERTAD1 WILD-TYPE" 
       TCGA-IB-7649        TCGA-IB-7885        TCGA-IB-7886        TCGA-IB-7891 
"SERTAD1 WILD-TYPE" "SERTAD1 WILD-TYPE" "SERTAD1 WILD-TYPE" "SERTAD1 WILD-TYPE" 
       TCGA-IB-8126        TCGA-IB-8127        TCGA-IB-A5SS        TCGA-IB-A6UG 
"SERTAD1 WILD-TYPE" "SERTAD1 WILD-TYPE" "SERTAD1 WILD-TYPE" "SERTAD1 WILD-TYPE" 
       TCGA-LB-A7SX        TCGA-OE-A75W 
"SERTAD1 WILD-TYPE" "SERTAD1 WILD-TYPE" 
                   vv
clus                R0 R1 RX
  SERTAD1 MUTATED    5  2  0
  SERTAD1 WILD-TYPE 37 22  2
D167V11, multiclass
    clus
vv   SERTAD1 MUTATED SERTAD1 WILD-TYPE
  R0               5                37
  R1               2                22
  RX               0                 2
D167V12, continuous

Clustering(168) Variable = SYT2 MUTATION ANALYSIS
D168V1, survival
                sevent
clus2             0  1
  SYT2 MUTATED    7  2
  SYT2 WILD-TYPE 33 27
  SYT2 MUTATED SYT2 WILD-TYPE 
             9             60 
  SYT2 MUTATED SYT2 WILD-TYPE 
             2             27 
$`SYT2 MUTATED`
TCGA-F2-A44H TCGA-HZ-7289 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-A4BK TCGA-IB-7645 
       19.27         7.89         0.79         0.69         1.51        49.38 
TCGA-IB-7891 TCGA-IB-7897 TCGA-IB-8127 
       16.04        15.98        17.16 

$`SYT2 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-FB-A4P5 
       10.98         9.70        11.84         7.10         5.03         0.13 
TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR TCGA-FZ-5920 
       11.93        12.66         2.47         0.03         5.46         2.01 
TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7918 
       36.20        20.81        12.89         7.66        13.02         0.92 
TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 
        0.66         0.13         0.26        12.13        11.87         0.26 
TCGA-HZ-8001 TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8636 TCGA-HZ-8638 
        0.62         3.95         0.92         0.53         0.16         2.99 
TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-IB-7644 TCGA-IB-7646 TCGA-IB-7647 
        0.76         0.95         6.38        11.41         4.77        21.90 
TCGA-IB-7649 TCGA-IB-7651 TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 
       15.35        19.82        15.65        27.98         4.04         3.62 
TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7893 TCGA-IB-8126 TCGA-IB-A5SO 
       43.79        15.81        19.66         3.85         0.56        10.82 
TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX 
        9.86         7.20        15.12         0.26         1.35         4.18 
TCGA-OE-A75W TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
        3.62         8.12        13.68        16.80        14.14        18.67 

  SYT2 MUTATED SYT2 WILD-TYPE 
          0.69           0.03 
  SYT2 MUTATED SYT2 WILD-TYPE 
         49.38          43.79 
  SYT2 MUTATED SYT2 WILD-TYPE 
         15.98           7.15 
[1] "0.7 - 49.4 (16.0)" "0.0 - 43.8 (7.2)" 
    TCGA-F2-6879     TCGA-F2-6880     TCGA-F2-7273     TCGA-F2-7276 
"SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" 
    TCGA-F2-A44G     TCGA-F2-A44H     TCGA-FB-A4P5     TCGA-FB-A4P6 
"SYT2 WILD-TYPE"   "SYT2 MUTATED" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" 
    TCGA-FB-A545     TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-FB-A7DR 
"SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" 
    TCGA-FZ-5920     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-H6-8124 
"SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" 
    TCGA-H6-A45N     TCGA-H8-A6C1     TCGA-HZ-7289     TCGA-HZ-7918 
"SYT2 WILD-TYPE" "SYT2 WILD-TYPE"   "SYT2 MUTATED" "SYT2 WILD-TYPE" 
    TCGA-HZ-7919     TCGA-HZ-7922     TCGA-HZ-7923     TCGA-HZ-7924 
"SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" 
    TCGA-HZ-7925     TCGA-HZ-7926     TCGA-HZ-8001     TCGA-HZ-8002 
"SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE"   "SYT2 MUTATED" 
    TCGA-HZ-8003     TCGA-HZ-8005     TCGA-HZ-8315     TCGA-HZ-8317 
  "SYT2 MUTATED" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" 
    TCGA-HZ-8636     TCGA-HZ-8638     TCGA-HZ-A49G     TCGA-HZ-A49H 
"SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" 
    TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-IB-7644     TCGA-IB-7645 
"SYT2 WILD-TYPE"   "SYT2 MUTATED" "SYT2 WILD-TYPE"   "SYT2 MUTATED" 
    TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7651 
"SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887 
"SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" 
    TCGA-IB-7888     TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891 
"SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE"   "SYT2 MUTATED" 
    TCGA-IB-7893     TCGA-IB-7897     TCGA-IB-8126     TCGA-IB-8127 
"SYT2 WILD-TYPE"   "SYT2 MUTATED" "SYT2 WILD-TYPE"   "SYT2 MUTATED" 
    TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS 
"SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" 
    TCGA-IB-A5ST     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
"SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" 
    TCGA-PZ-A5RE     TCGA-Q3-A5QY     TCGA-US-A779     TCGA-US-A77E 
"SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" 
    TCGA-US-A77J 
"SYT2 WILD-TYPE" 
    TCGA-F2-6879     TCGA-F2-6880     TCGA-F2-7273     TCGA-F2-7276 
"SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" 
    TCGA-F2-A44G     TCGA-F2-A44H     TCGA-FB-A4P5     TCGA-FB-A4P6 
"SYT2 WILD-TYPE"   "SYT2 MUTATED" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" 
    TCGA-FB-A545     TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-FB-A7DR 
"SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" 
    TCGA-FZ-5920     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-H6-8124 
"SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" 
    TCGA-H6-A45N     TCGA-H8-A6C1     TCGA-HZ-7289     TCGA-HZ-7918 
"SYT2 WILD-TYPE" "SYT2 WILD-TYPE"   "SYT2 MUTATED" "SYT2 WILD-TYPE" 
    TCGA-HZ-7919     TCGA-HZ-7922     TCGA-HZ-7923     TCGA-HZ-7924 
"SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" 
    TCGA-HZ-7925     TCGA-HZ-7926     TCGA-HZ-8001     TCGA-HZ-8002 
"SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE"   "SYT2 MUTATED" 
    TCGA-HZ-8003     TCGA-HZ-8005     TCGA-HZ-8315     TCGA-HZ-8317 
  "SYT2 MUTATED" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" 
    TCGA-HZ-8636     TCGA-HZ-8638     TCGA-HZ-A49G     TCGA-HZ-A49H 
"SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" 
    TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-IB-7644     TCGA-IB-7645 
"SYT2 WILD-TYPE"   "SYT2 MUTATED" "SYT2 WILD-TYPE"   "SYT2 MUTATED" 
    TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7651 
"SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887 
"SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" 
    TCGA-IB-7888     TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891 
"SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE"   "SYT2 MUTATED" 
    TCGA-IB-7893     TCGA-IB-7897     TCGA-IB-8126     TCGA-IB-8127 
"SYT2 WILD-TYPE"   "SYT2 MUTATED" "SYT2 WILD-TYPE"   "SYT2 MUTATED" 
    TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS 
"SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" 
    TCGA-IB-A5ST     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
"SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" 
    TCGA-PZ-A5RE     TCGA-Q3-A5QY     TCGA-US-A779     TCGA-US-A77E 
"SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" 
    TCGA-US-A77J 
"SYT2 WILD-TYPE" 
    TCGA-F2-6879     TCGA-F2-6880     TCGA-F2-7273     TCGA-F2-7276 
"SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" 
    TCGA-F2-A44G     TCGA-F2-A44H     TCGA-FB-A4P5     TCGA-FB-A4P6 
"SYT2 WILD-TYPE"   "SYT2 MUTATED" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" 
    TCGA-FB-A545     TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-FB-A7DR 
"SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" 
    TCGA-FZ-5920     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-H6-8124 
"SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" 
    TCGA-H6-A45N     TCGA-H8-A6C1     TCGA-HZ-7289     TCGA-HZ-7918 
"SYT2 WILD-TYPE" "SYT2 WILD-TYPE"   "SYT2 MUTATED" "SYT2 WILD-TYPE" 
    TCGA-HZ-7919     TCGA-HZ-7922     TCGA-HZ-7923     TCGA-HZ-7924 
"SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" 
    TCGA-HZ-7925     TCGA-HZ-7926     TCGA-HZ-8001     TCGA-HZ-8002 
"SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE"   "SYT2 MUTATED" 
    TCGA-HZ-8003     TCGA-HZ-8005     TCGA-HZ-8315     TCGA-HZ-8317 
  "SYT2 MUTATED" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" 
    TCGA-HZ-8636     TCGA-HZ-8638     TCGA-HZ-A49G     TCGA-HZ-A49H 
"SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" 
    TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-IB-7644     TCGA-IB-7645 
"SYT2 WILD-TYPE"   "SYT2 MUTATED" "SYT2 WILD-TYPE"   "SYT2 MUTATED" 
    TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7651 
"SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887 
"SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" 
    TCGA-IB-7888     TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891 
"SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE"   "SYT2 MUTATED" 
    TCGA-IB-7893     TCGA-IB-7897     TCGA-IB-8126     TCGA-IB-8127 
"SYT2 WILD-TYPE"   "SYT2 MUTATED" "SYT2 WILD-TYPE"   "SYT2 MUTATED" 
    TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS 
"SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" 
    TCGA-IB-A5ST     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
"SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" 
    TCGA-PZ-A5RE     TCGA-Q3-A5QY     TCGA-US-A779     TCGA-US-A77E 
"SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" 
    TCGA-US-A77J 
"SYT2 WILD-TYPE" 
[1] "hr=" "7.3"
D168V2, continuous
                vv
clus             STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  SYT2 MUTATED          0        0         1         8         0        0
  SYT2 WILD-TYPE        1        4        10        43         2        3
D168V3, multiclass
                vv
clus             T1+T2 T3+T4
  SYT2 MUTATED       0     9
  SYT2 WILD-TYPE     6    57
D168V4, multiclass
       clus
vv      SYT2 MUTATED SYT2 WILD-TYPE
  T1+T2            0              6
  T3+T4            9             57
D168V5, binary
                cls
clus              0  1
  SYT2 MUTATED    1  8
  SYT2 WILD-TYPE 16 46
[1] "tbl2"
                cls
clus             [,1] [,2]
  SYT2 MUTATED      1    8
  SYT2 WILD-TYPE   16   46
   clus
vv  SYT2 MUTATED SYT2 WILD-TYPE
  0            1             16
  1            8             46
                vv
clus             M0 M1 MX
  SYT2 MUTATED    5  0  4
  SYT2 WILD-TYPE 34  3 26
D168V6, multiclass
    clus
vv   SYT2 MUTATED SYT2 WILD-TYPE
  M0            5             34
  M1            0              3
  MX            4             26
D168V7, binary
                cls
clus              0  1
  SYT2 MUTATED    3  6
  SYT2 WILD-TYPE 33 30
[1] "tbl2"
                cls
clus             [,1] [,2]
  SYT2 MUTATED      3    6
  SYT2 WILD-TYPE   33   30
        clus
vv       SYT2 MUTATED SYT2 WILD-TYPE
  FEMALE            3             33
  MALE              6             30
                vv
clus             PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  SYT2 MUTATED                                     7
  SYT2 WILD-TYPE                                  58
                vv
clus             PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  SYT2 MUTATED                                       2
  SYT2 WILD-TYPE                                     2
                vv
clus             PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  SYT2 MUTATED                                                  0
  SYT2 WILD-TYPE                                                2
D168V8, multiclass
                                                  clus
vv                                                 SYT2 MUTATED SYT2 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                         7             58
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                       2              2
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA            0              2
D168V9, continuous
[1] "Remove cluster labels:" "SYT2 MUTATED"          
clus
  SYT2 MUTATED SYT2 WILD-TYPE 
             2             20 
    TCGA-F2-6880     TCGA-FB-A4P5     TCGA-FB-A4P6     TCGA-FB-A5VM 
"SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" 
    TCGA-FB-A78T     TCGA-FB-A7DR     TCGA-H6-8124     TCGA-H6-A45N 
"SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" 
    TCGA-H8-A6C1     TCGA-IB-7644     TCGA-IB-7649     TCGA-IB-7651 
"SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" 
    TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887     TCGA-IB-8126 
"SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" 
    TCGA-IB-A5SS     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
"SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" 
D168V10, continuous
[1] "Remove cluster labels:" "SYT2 MUTATED"          
clus
  SYT2 MUTATED SYT2 WILD-TYPE 
             2             17 
    TCGA-FB-A4P5     TCGA-FB-A4P6     TCGA-FB-A5VM     TCGA-FB-A78T 
"SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" 
    TCGA-FB-A7DR     TCGA-H6-8124     TCGA-H8-A6C1     TCGA-IB-7644 
"SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" 
    TCGA-IB-7649     TCGA-IB-7651     TCGA-IB-7885     TCGA-IB-7886 
"SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" 
    TCGA-IB-8126     TCGA-IB-A5SS     TCGA-IB-A6UG     TCGA-LB-A7SX 
"SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" "SYT2 WILD-TYPE" 
    TCGA-OE-A75W 
"SYT2 WILD-TYPE" 
                vv
clus             R0 R1 RX
  SYT2 MUTATED    6  2  1
  SYT2 WILD-TYPE 36 22  1
D168V11, multiclass
    clus
vv   SYT2 MUTATED SYT2 WILD-TYPE
  R0            6             36
  R1            2             22
  RX            1              1
D168V12, continuous

Clustering(169) Variable = ZFP36 MUTATION ANALYSIS
D169V1, survival
                 sevent
clus2              0  1
  ZFP36 MUTATED    4  3
  ZFP36 WILD-TYPE 36 26
  ZFP36 MUTATED ZFP36 WILD-TYPE 
              7              62 
  ZFP36 MUTATED ZFP36 WILD-TYPE 
              3              26 
$`ZFP36 MUTATED`
TCGA-F2-7276 TCGA-H6-A45N TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-A4BH 
        7.10         7.66         0.79         0.69         3.95         6.38 
TCGA-IB-8126 
        0.56 

$`ZFP36 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-A44G TCGA-F2-A44H TCGA-FB-A4P5 
       10.98         9.70        11.84         5.03        19.27         0.13 
TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR TCGA-FZ-5920 
       11.93        12.66         2.47         0.03         5.46         2.01 
TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 TCGA-H8-A6C1 TCGA-HZ-7289 TCGA-HZ-7918 
       36.20        20.81        12.89        13.02         7.89         0.92 
TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 
        0.66         0.13         0.26        12.13        11.87         0.26 
TCGA-HZ-8001 TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G 
        0.62         0.92         0.53         0.16         2.99         0.76 
TCGA-HZ-A49H TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 
        0.95         1.51        11.41        49.38         4.77        21.90 
TCGA-IB-7649 TCGA-IB-7651 TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 
       15.35        19.82        15.65        27.98         4.04         3.62 
TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-7897 
       43.79        15.81        19.66        16.04         3.85        15.98 
TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST 
       17.16        10.82         9.86         7.20        15.12         0.26 
TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 
        1.35         4.18         3.62         8.12        13.68        16.80 
TCGA-US-A77E TCGA-US-A77J 
       14.14        18.67 

  ZFP36 MUTATED ZFP36 WILD-TYPE 
           0.56            0.03 
  ZFP36 MUTATED ZFP36 WILD-TYPE 
           7.66           49.38 
  ZFP36 MUTATED ZFP36 WILD-TYPE 
           3.95            9.78 
[1] "0.6 - 7.7 (4.0)"  "0.0 - 49.4 (9.8)"
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"ZFP36 WILD-TYPE" "ZFP36 WILD-TYPE" "ZFP36 WILD-TYPE"   "ZFP36 MUTATED" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"ZFP36 WILD-TYPE" "ZFP36 WILD-TYPE" "ZFP36 WILD-TYPE" "ZFP36 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"ZFP36 WILD-TYPE" "ZFP36 WILD-TYPE" "ZFP36 WILD-TYPE" "ZFP36 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"ZFP36 WILD-TYPE" "ZFP36 WILD-TYPE" "ZFP36 WILD-TYPE" "ZFP36 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
  "ZFP36 MUTATED" "ZFP36 WILD-TYPE" "ZFP36 WILD-TYPE" "ZFP36 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"ZFP36 WILD-TYPE" "ZFP36 WILD-TYPE" "ZFP36 WILD-TYPE" "ZFP36 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"ZFP36 WILD-TYPE" "ZFP36 WILD-TYPE" "ZFP36 WILD-TYPE"   "ZFP36 MUTATED" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
  "ZFP36 MUTATED"   "ZFP36 MUTATED" "ZFP36 WILD-TYPE" "ZFP36 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"ZFP36 WILD-TYPE" "ZFP36 WILD-TYPE" "ZFP36 WILD-TYPE" "ZFP36 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
  "ZFP36 MUTATED" "ZFP36 WILD-TYPE" "ZFP36 WILD-TYPE" "ZFP36 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"ZFP36 WILD-TYPE" "ZFP36 WILD-TYPE" "ZFP36 WILD-TYPE" "ZFP36 WILD-TYPE" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"ZFP36 WILD-TYPE" "ZFP36 WILD-TYPE" "ZFP36 WILD-TYPE" "ZFP36 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"ZFP36 WILD-TYPE" "ZFP36 WILD-TYPE" "ZFP36 WILD-TYPE" "ZFP36 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"ZFP36 WILD-TYPE" "ZFP36 WILD-TYPE"   "ZFP36 MUTATED" "ZFP36 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"ZFP36 WILD-TYPE" "ZFP36 WILD-TYPE" "ZFP36 WILD-TYPE" "ZFP36 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"ZFP36 WILD-TYPE" "ZFP36 WILD-TYPE" "ZFP36 WILD-TYPE" "ZFP36 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"ZFP36 WILD-TYPE" "ZFP36 WILD-TYPE" "ZFP36 WILD-TYPE" "ZFP36 WILD-TYPE" 
     TCGA-US-A77J 
"ZFP36 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"ZFP36 WILD-TYPE" "ZFP36 WILD-TYPE" "ZFP36 WILD-TYPE"   "ZFP36 MUTATED" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"ZFP36 WILD-TYPE" "ZFP36 WILD-TYPE" "ZFP36 WILD-TYPE" "ZFP36 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"ZFP36 WILD-TYPE" "ZFP36 WILD-TYPE" "ZFP36 WILD-TYPE" "ZFP36 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"ZFP36 WILD-TYPE" "ZFP36 WILD-TYPE" "ZFP36 WILD-TYPE" "ZFP36 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
  "ZFP36 MUTATED" "ZFP36 WILD-TYPE" "ZFP36 WILD-TYPE" "ZFP36 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"ZFP36 WILD-TYPE" "ZFP36 WILD-TYPE" "ZFP36 WILD-TYPE" "ZFP36 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"ZFP36 WILD-TYPE" "ZFP36 WILD-TYPE" "ZFP36 WILD-TYPE"   "ZFP36 MUTATED" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
  "ZFP36 MUTATED"   "ZFP36 MUTATED" "ZFP36 WILD-TYPE" "ZFP36 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"ZFP36 WILD-TYPE" "ZFP36 WILD-TYPE" "ZFP36 WILD-TYPE" "ZFP36 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
  "ZFP36 MUTATED" "ZFP36 WILD-TYPE" "ZFP36 WILD-TYPE" "ZFP36 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"ZFP36 WILD-TYPE" "ZFP36 WILD-TYPE" "ZFP36 WILD-TYPE" "ZFP36 WILD-TYPE" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"ZFP36 WILD-TYPE" "ZFP36 WILD-TYPE" "ZFP36 WILD-TYPE" "ZFP36 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"ZFP36 WILD-TYPE" "ZFP36 WILD-TYPE" "ZFP36 WILD-TYPE" "ZFP36 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"ZFP36 WILD-TYPE" "ZFP36 WILD-TYPE"   "ZFP36 MUTATED" "ZFP36 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"ZFP36 WILD-TYPE" "ZFP36 WILD-TYPE" "ZFP36 WILD-TYPE" "ZFP36 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"ZFP36 WILD-TYPE" "ZFP36 WILD-TYPE" "ZFP36 WILD-TYPE" "ZFP36 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"ZFP36 WILD-TYPE" "ZFP36 WILD-TYPE" "ZFP36 WILD-TYPE" "ZFP36 WILD-TYPE" 
     TCGA-US-A77J 
"ZFP36 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"ZFP36 WILD-TYPE" "ZFP36 WILD-TYPE" "ZFP36 WILD-TYPE"   "ZFP36 MUTATED" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"ZFP36 WILD-TYPE" "ZFP36 WILD-TYPE" "ZFP36 WILD-TYPE" "ZFP36 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"ZFP36 WILD-TYPE" "ZFP36 WILD-TYPE" "ZFP36 WILD-TYPE" "ZFP36 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"ZFP36 WILD-TYPE" "ZFP36 WILD-TYPE" "ZFP36 WILD-TYPE" "ZFP36 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
  "ZFP36 MUTATED" "ZFP36 WILD-TYPE" "ZFP36 WILD-TYPE" "ZFP36 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"ZFP36 WILD-TYPE" "ZFP36 WILD-TYPE" "ZFP36 WILD-TYPE" "ZFP36 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"ZFP36 WILD-TYPE" "ZFP36 WILD-TYPE" "ZFP36 WILD-TYPE"   "ZFP36 MUTATED" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
  "ZFP36 MUTATED"   "ZFP36 MUTATED" "ZFP36 WILD-TYPE" "ZFP36 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"ZFP36 WILD-TYPE" "ZFP36 WILD-TYPE" "ZFP36 WILD-TYPE" "ZFP36 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
  "ZFP36 MUTATED" "ZFP36 WILD-TYPE" "ZFP36 WILD-TYPE" "ZFP36 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"ZFP36 WILD-TYPE" "ZFP36 WILD-TYPE" "ZFP36 WILD-TYPE" "ZFP36 WILD-TYPE" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"ZFP36 WILD-TYPE" "ZFP36 WILD-TYPE" "ZFP36 WILD-TYPE" "ZFP36 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"ZFP36 WILD-TYPE" "ZFP36 WILD-TYPE" "ZFP36 WILD-TYPE" "ZFP36 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"ZFP36 WILD-TYPE" "ZFP36 WILD-TYPE"   "ZFP36 MUTATED" "ZFP36 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"ZFP36 WILD-TYPE" "ZFP36 WILD-TYPE" "ZFP36 WILD-TYPE" "ZFP36 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"ZFP36 WILD-TYPE" "ZFP36 WILD-TYPE" "ZFP36 WILD-TYPE" "ZFP36 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"ZFP36 WILD-TYPE" "ZFP36 WILD-TYPE" "ZFP36 WILD-TYPE" "ZFP36 WILD-TYPE" 
     TCGA-US-A77J 
"ZFP36 WILD-TYPE" 
[1] "hr=" "4.5"
D169V2, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  ZFP36 MUTATED          0        0         0         6         1        0
  ZFP36 WILD-TYPE        1        4        11        45         1        3
D169V3, multiclass
                 vv
clus              T1+T2 T3+T4
  ZFP36 MUTATED       0     7
  ZFP36 WILD-TYPE     6    59
D169V4, multiclass
       clus
vv      ZFP36 MUTATED ZFP36 WILD-TYPE
  T1+T2             0               6
  T3+T4             7              59
D169V5, binary
                 cls
clus               0  1
  ZFP36 MUTATED    0  7
  ZFP36 WILD-TYPE 17 47
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ZFP36 MUTATED      0    7
  ZFP36 WILD-TYPE   17   47
   clus
vv  ZFP36 MUTATED ZFP36 WILD-TYPE
  0             0              17
  1             7              47
                 vv
clus              M0 M1 MX
  ZFP36 MUTATED    2  0  5
  ZFP36 WILD-TYPE 37  3 25
D169V6, multiclass
    clus
vv   ZFP36 MUTATED ZFP36 WILD-TYPE
  M0             2              37
  M1             0               3
  MX             5              25
D169V7, binary
                 cls
clus               0  1
  ZFP36 MUTATED    3  4
  ZFP36 WILD-TYPE 33 32
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ZFP36 MUTATED      3    4
  ZFP36 WILD-TYPE   33   32
        clus
vv       ZFP36 MUTATED ZFP36 WILD-TYPE
  FEMALE             3              33
  MALE               4              32
                 vv
clus              PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  ZFP36 MUTATED                                     6
  ZFP36 WILD-TYPE                                  59
                 vv
clus              PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  ZFP36 MUTATED                                       1
  ZFP36 WILD-TYPE                                     3
                 vv
clus              PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  ZFP36 MUTATED                                                  0
  ZFP36 WILD-TYPE                                                2
D169V8, multiclass
                                                  clus
vv                                                 ZFP36 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                          6
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                        1
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA             0
                                                  clus
vv                                                 ZFP36 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                           59
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                          3
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA               2
D169V9, continuous
[1] "Remove cluster labels:" "ZFP36 MUTATED"         
clus
  ZFP36 MUTATED ZFP36 WILD-TYPE 
              2              20 
     TCGA-F2-6880      TCGA-FB-A4P5      TCGA-FB-A4P6      TCGA-FB-A5VM 
"ZFP36 WILD-TYPE" "ZFP36 WILD-TYPE" "ZFP36 WILD-TYPE" "ZFP36 WILD-TYPE" 
     TCGA-FB-A78T      TCGA-FB-A7DR      TCGA-H6-8124      TCGA-H8-A6C1 
"ZFP36 WILD-TYPE" "ZFP36 WILD-TYPE" "ZFP36 WILD-TYPE" "ZFP36 WILD-TYPE" 
     TCGA-IB-7644      TCGA-IB-7649      TCGA-IB-7651      TCGA-IB-7885 
"ZFP36 WILD-TYPE" "ZFP36 WILD-TYPE" "ZFP36 WILD-TYPE" "ZFP36 WILD-TYPE" 
     TCGA-IB-7886      TCGA-IB-7887      TCGA-IB-7891      TCGA-IB-8127 
"ZFP36 WILD-TYPE" "ZFP36 WILD-TYPE" "ZFP36 WILD-TYPE" "ZFP36 WILD-TYPE" 
     TCGA-IB-A5SS      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"ZFP36 WILD-TYPE" "ZFP36 WILD-TYPE" "ZFP36 WILD-TYPE" "ZFP36 WILD-TYPE" 
D169V10, continuous
[1] "Remove cluster labels:" "ZFP36 MUTATED"         
clus
  ZFP36 MUTATED ZFP36 WILD-TYPE 
              1              18 
     TCGA-FB-A4P5      TCGA-FB-A4P6      TCGA-FB-A5VM      TCGA-FB-A78T 
"ZFP36 WILD-TYPE" "ZFP36 WILD-TYPE" "ZFP36 WILD-TYPE" "ZFP36 WILD-TYPE" 
     TCGA-FB-A7DR      TCGA-H6-8124      TCGA-H8-A6C1      TCGA-IB-7644 
"ZFP36 WILD-TYPE" "ZFP36 WILD-TYPE" "ZFP36 WILD-TYPE" "ZFP36 WILD-TYPE" 
     TCGA-IB-7649      TCGA-IB-7651      TCGA-IB-7885      TCGA-IB-7886 
"ZFP36 WILD-TYPE" "ZFP36 WILD-TYPE" "ZFP36 WILD-TYPE" "ZFP36 WILD-TYPE" 
     TCGA-IB-7891      TCGA-IB-8127      TCGA-IB-A5SS      TCGA-IB-A6UG 
"ZFP36 WILD-TYPE" "ZFP36 WILD-TYPE" "ZFP36 WILD-TYPE" "ZFP36 WILD-TYPE" 
     TCGA-LB-A7SX      TCGA-OE-A75W 
"ZFP36 WILD-TYPE" "ZFP36 WILD-TYPE" 
                 vv
clus              R0 R1 RX
  ZFP36 MUTATED    3  3  0
  ZFP36 WILD-TYPE 39 21  2
D169V11, multiclass
    clus
vv   ZFP36 MUTATED ZFP36 WILD-TYPE
  R0             3              39
  R1             3              21
  RX             0               2
D169V12, continuous

Clustering(170) Variable = UHRF1BP1 MUTATION ANALYSIS
D170V1, survival
                    sevent
clus2                 0  1
  UHRF1BP1 MUTATED    5  2
  UHRF1BP1 WILD-TYPE 35 27
  UHRF1BP1 MUTATED UHRF1BP1 WILD-TYPE 
                 7                 62 
  UHRF1BP1 MUTATED UHRF1BP1 WILD-TYPE 
                 2                 27 
$`UHRF1BP1 MUTATED`
TCGA-F2-6880 TCGA-H6-A45N TCGA-HZ-7922 TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-IB-7651 
        9.70         7.66         0.13         0.95         6.38        19.82 
TCGA-IB-8127 
       17.16 

$`UHRF1BP1 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H TCGA-FB-A4P5 
       10.98        11.84         7.10         5.03        19.27         0.13 
TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR TCGA-FZ-5920 
       11.93        12.66         2.47         0.03         5.46         2.01 
TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 TCGA-H8-A6C1 TCGA-HZ-7289 TCGA-HZ-7918 
       36.20        20.81        12.89        13.02         7.89         0.92 
TCGA-HZ-7919 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8001 
        0.66         0.26        12.13        11.87         0.26         0.62 
TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8636 
        0.79         0.69         3.95         0.92         0.53         0.16 
TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7646 
        2.99         0.76         1.51        11.41        49.38         4.77 
TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 
       21.90        15.35        15.65        27.98         4.04         3.62 
TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-7897 
       43.79        15.81        19.66        16.04         3.85        15.98 
TCGA-IB-8126 TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST 
        0.56        10.82         9.86         7.20        15.12         0.26 
TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 
        1.35         4.18         3.62         8.12        13.68        16.80 
TCGA-US-A77E TCGA-US-A77J 
       14.14        18.67 

  UHRF1BP1 MUTATED UHRF1BP1 WILD-TYPE 
              0.13               0.03 
  UHRF1BP1 MUTATED UHRF1BP1 WILD-TYPE 
             19.82              49.38 
  UHRF1BP1 MUTATED UHRF1BP1 WILD-TYPE 
             7.660              7.545 
[1] "0.1 - 19.8 (7.7)" "0.0 - 49.4 (7.5)"
        TCGA-F2-6879         TCGA-F2-6880         TCGA-F2-7273 
"UHRF1BP1 WILD-TYPE"   "UHRF1BP1 MUTATED" "UHRF1BP1 WILD-TYPE" 
        TCGA-F2-7276         TCGA-F2-A44G         TCGA-F2-A44H 
"UHRF1BP1 WILD-TYPE" "UHRF1BP1 WILD-TYPE" "UHRF1BP1 WILD-TYPE" 
        TCGA-FB-A4P5         TCGA-FB-A4P6         TCGA-FB-A545 
"UHRF1BP1 WILD-TYPE" "UHRF1BP1 WILD-TYPE" "UHRF1BP1 WILD-TYPE" 
        TCGA-FB-A5VM         TCGA-FB-A78T         TCGA-FB-A7DR 
"UHRF1BP1 WILD-TYPE" "UHRF1BP1 WILD-TYPE" "UHRF1BP1 WILD-TYPE" 
        TCGA-FZ-5920         TCGA-FZ-5922         TCGA-FZ-5923 
"UHRF1BP1 WILD-TYPE" "UHRF1BP1 WILD-TYPE" "UHRF1BP1 WILD-TYPE" 
        TCGA-H6-8124         TCGA-H6-A45N         TCGA-H8-A6C1 
"UHRF1BP1 WILD-TYPE"   "UHRF1BP1 MUTATED" "UHRF1BP1 WILD-TYPE" 
        TCGA-HZ-7289         TCGA-HZ-7918         TCGA-HZ-7919 
"UHRF1BP1 WILD-TYPE" "UHRF1BP1 WILD-TYPE" "UHRF1BP1 WILD-TYPE" 
        TCGA-HZ-7922         TCGA-HZ-7923         TCGA-HZ-7924 
  "UHRF1BP1 MUTATED" "UHRF1BP1 WILD-TYPE" "UHRF1BP1 WILD-TYPE" 
        TCGA-HZ-7925         TCGA-HZ-7926         TCGA-HZ-8001 
"UHRF1BP1 WILD-TYPE" "UHRF1BP1 WILD-TYPE" "UHRF1BP1 WILD-TYPE" 
        TCGA-HZ-8002         TCGA-HZ-8003         TCGA-HZ-8005 
"UHRF1BP1 WILD-TYPE" "UHRF1BP1 WILD-TYPE" "UHRF1BP1 WILD-TYPE" 
        TCGA-HZ-8315         TCGA-HZ-8317         TCGA-HZ-8636 
"UHRF1BP1 WILD-TYPE" "UHRF1BP1 WILD-TYPE" "UHRF1BP1 WILD-TYPE" 
        TCGA-HZ-8638         TCGA-HZ-A49G         TCGA-HZ-A49H 
"UHRF1BP1 WILD-TYPE" "UHRF1BP1 WILD-TYPE"   "UHRF1BP1 MUTATED" 
        TCGA-HZ-A4BH         TCGA-HZ-A4BK         TCGA-IB-7644 
  "UHRF1BP1 MUTATED" "UHRF1BP1 WILD-TYPE" "UHRF1BP1 WILD-TYPE" 
        TCGA-IB-7645         TCGA-IB-7646         TCGA-IB-7647 
"UHRF1BP1 WILD-TYPE" "UHRF1BP1 WILD-TYPE" "UHRF1BP1 WILD-TYPE" 
        TCGA-IB-7649         TCGA-IB-7651         TCGA-IB-7652 
"UHRF1BP1 WILD-TYPE"   "UHRF1BP1 MUTATED" "UHRF1BP1 WILD-TYPE" 
        TCGA-IB-7885         TCGA-IB-7886         TCGA-IB-7887 
"UHRF1BP1 WILD-TYPE" "UHRF1BP1 WILD-TYPE" "UHRF1BP1 WILD-TYPE" 
        TCGA-IB-7888         TCGA-IB-7889         TCGA-IB-7890 
"UHRF1BP1 WILD-TYPE" "UHRF1BP1 WILD-TYPE" "UHRF1BP1 WILD-TYPE" 
        TCGA-IB-7891         TCGA-IB-7893         TCGA-IB-7897 
"UHRF1BP1 WILD-TYPE" "UHRF1BP1 WILD-TYPE" "UHRF1BP1 WILD-TYPE" 
        TCGA-IB-8126         TCGA-IB-8127         TCGA-IB-A5SO 
"UHRF1BP1 WILD-TYPE"   "UHRF1BP1 MUTATED" "UHRF1BP1 WILD-TYPE" 
        TCGA-IB-A5SP         TCGA-IB-A5SQ         TCGA-IB-A5SS 
"UHRF1BP1 WILD-TYPE" "UHRF1BP1 WILD-TYPE" "UHRF1BP1 WILD-TYPE" 
        TCGA-IB-A5ST         TCGA-IB-A6UG         TCGA-LB-A7SX 
"UHRF1BP1 WILD-TYPE" "UHRF1BP1 WILD-TYPE" "UHRF1BP1 WILD-TYPE" 
        TCGA-OE-A75W         TCGA-PZ-A5RE         TCGA-Q3-A5QY 
"UHRF1BP1 WILD-TYPE" "UHRF1BP1 WILD-TYPE" "UHRF1BP1 WILD-TYPE" 
        TCGA-US-A779         TCGA-US-A77E         TCGA-US-A77J 
"UHRF1BP1 WILD-TYPE" "UHRF1BP1 WILD-TYPE" "UHRF1BP1 WILD-TYPE" 
        TCGA-F2-6879         TCGA-F2-6880         TCGA-F2-7273 
"UHRF1BP1 WILD-TYPE"   "UHRF1BP1 MUTATED" "UHRF1BP1 WILD-TYPE" 
        TCGA-F2-7276         TCGA-F2-A44G         TCGA-F2-A44H 
"UHRF1BP1 WILD-TYPE" "UHRF1BP1 WILD-TYPE" "UHRF1BP1 WILD-TYPE" 
        TCGA-FB-A4P5         TCGA-FB-A4P6         TCGA-FB-A545 
"UHRF1BP1 WILD-TYPE" "UHRF1BP1 WILD-TYPE" "UHRF1BP1 WILD-TYPE" 
        TCGA-FB-A5VM         TCGA-FB-A78T         TCGA-FB-A7DR 
"UHRF1BP1 WILD-TYPE" "UHRF1BP1 WILD-TYPE" "UHRF1BP1 WILD-TYPE" 
        TCGA-FZ-5920         TCGA-FZ-5922         TCGA-FZ-5923 
"UHRF1BP1 WILD-TYPE" "UHRF1BP1 WILD-TYPE" "UHRF1BP1 WILD-TYPE" 
        TCGA-H6-8124         TCGA-H6-A45N         TCGA-H8-A6C1 
"UHRF1BP1 WILD-TYPE"   "UHRF1BP1 MUTATED" "UHRF1BP1 WILD-TYPE" 
        TCGA-HZ-7289         TCGA-HZ-7918         TCGA-HZ-7919 
"UHRF1BP1 WILD-TYPE" "UHRF1BP1 WILD-TYPE" "UHRF1BP1 WILD-TYPE" 
        TCGA-HZ-7922         TCGA-HZ-7923         TCGA-HZ-7924 
  "UHRF1BP1 MUTATED" "UHRF1BP1 WILD-TYPE" "UHRF1BP1 WILD-TYPE" 
        TCGA-HZ-7925         TCGA-HZ-7926         TCGA-HZ-8001 
"UHRF1BP1 WILD-TYPE" "UHRF1BP1 WILD-TYPE" "UHRF1BP1 WILD-TYPE" 
        TCGA-HZ-8002         TCGA-HZ-8003         TCGA-HZ-8005 
"UHRF1BP1 WILD-TYPE" "UHRF1BP1 WILD-TYPE" "UHRF1BP1 WILD-TYPE" 
        TCGA-HZ-8315         TCGA-HZ-8317         TCGA-HZ-8636 
"UHRF1BP1 WILD-TYPE" "UHRF1BP1 WILD-TYPE" "UHRF1BP1 WILD-TYPE" 
        TCGA-HZ-8638         TCGA-HZ-A49G         TCGA-HZ-A49H 
"UHRF1BP1 WILD-TYPE" "UHRF1BP1 WILD-TYPE"   "UHRF1BP1 MUTATED" 
        TCGA-HZ-A4BH         TCGA-HZ-A4BK         TCGA-IB-7644 
  "UHRF1BP1 MUTATED" "UHRF1BP1 WILD-TYPE" "UHRF1BP1 WILD-TYPE" 
        TCGA-IB-7645         TCGA-IB-7646         TCGA-IB-7647 
"UHRF1BP1 WILD-TYPE" "UHRF1BP1 WILD-TYPE" "UHRF1BP1 WILD-TYPE" 
        TCGA-IB-7649         TCGA-IB-7651         TCGA-IB-7652 
"UHRF1BP1 WILD-TYPE"   "UHRF1BP1 MUTATED" "UHRF1BP1 WILD-TYPE" 
        TCGA-IB-7885         TCGA-IB-7886         TCGA-IB-7887 
"UHRF1BP1 WILD-TYPE" "UHRF1BP1 WILD-TYPE" "UHRF1BP1 WILD-TYPE" 
        TCGA-IB-7888         TCGA-IB-7889         TCGA-IB-7890 
"UHRF1BP1 WILD-TYPE" "UHRF1BP1 WILD-TYPE" "UHRF1BP1 WILD-TYPE" 
        TCGA-IB-7891         TCGA-IB-7893         TCGA-IB-7897 
"UHRF1BP1 WILD-TYPE" "UHRF1BP1 WILD-TYPE" "UHRF1BP1 WILD-TYPE" 
        TCGA-IB-8126         TCGA-IB-8127         TCGA-IB-A5SO 
"UHRF1BP1 WILD-TYPE"   "UHRF1BP1 MUTATED" "UHRF1BP1 WILD-TYPE" 
        TCGA-IB-A5SP         TCGA-IB-A5SQ         TCGA-IB-A5SS 
"UHRF1BP1 WILD-TYPE" "UHRF1BP1 WILD-TYPE" "UHRF1BP1 WILD-TYPE" 
        TCGA-IB-A5ST         TCGA-IB-A6UG         TCGA-LB-A7SX 
"UHRF1BP1 WILD-TYPE" "UHRF1BP1 WILD-TYPE" "UHRF1BP1 WILD-TYPE" 
        TCGA-OE-A75W         TCGA-PZ-A5RE         TCGA-Q3-A5QY 
"UHRF1BP1 WILD-TYPE" "UHRF1BP1 WILD-TYPE" "UHRF1BP1 WILD-TYPE" 
        TCGA-US-A779         TCGA-US-A77E         TCGA-US-A77J 
"UHRF1BP1 WILD-TYPE" "UHRF1BP1 WILD-TYPE" "UHRF1BP1 WILD-TYPE" 
        TCGA-F2-6879         TCGA-F2-6880         TCGA-F2-7273 
"UHRF1BP1 WILD-TYPE"   "UHRF1BP1 MUTATED" "UHRF1BP1 WILD-TYPE" 
        TCGA-F2-7276         TCGA-F2-A44G         TCGA-F2-A44H 
"UHRF1BP1 WILD-TYPE" "UHRF1BP1 WILD-TYPE" "UHRF1BP1 WILD-TYPE" 
        TCGA-FB-A4P5         TCGA-FB-A4P6         TCGA-FB-A545 
"UHRF1BP1 WILD-TYPE" "UHRF1BP1 WILD-TYPE" "UHRF1BP1 WILD-TYPE" 
        TCGA-FB-A5VM         TCGA-FB-A78T         TCGA-FB-A7DR 
"UHRF1BP1 WILD-TYPE" "UHRF1BP1 WILD-TYPE" "UHRF1BP1 WILD-TYPE" 
        TCGA-FZ-5920         TCGA-FZ-5922         TCGA-FZ-5923 
"UHRF1BP1 WILD-TYPE" "UHRF1BP1 WILD-TYPE" "UHRF1BP1 WILD-TYPE" 
        TCGA-H6-8124         TCGA-H6-A45N         TCGA-H8-A6C1 
"UHRF1BP1 WILD-TYPE"   "UHRF1BP1 MUTATED" "UHRF1BP1 WILD-TYPE" 
        TCGA-HZ-7289         TCGA-HZ-7918         TCGA-HZ-7919 
"UHRF1BP1 WILD-TYPE" "UHRF1BP1 WILD-TYPE" "UHRF1BP1 WILD-TYPE" 
        TCGA-HZ-7922         TCGA-HZ-7923         TCGA-HZ-7924 
  "UHRF1BP1 MUTATED" "UHRF1BP1 WILD-TYPE" "UHRF1BP1 WILD-TYPE" 
        TCGA-HZ-7925         TCGA-HZ-7926         TCGA-HZ-8001 
"UHRF1BP1 WILD-TYPE" "UHRF1BP1 WILD-TYPE" "UHRF1BP1 WILD-TYPE" 
        TCGA-HZ-8002         TCGA-HZ-8003         TCGA-HZ-8005 
"UHRF1BP1 WILD-TYPE" "UHRF1BP1 WILD-TYPE" "UHRF1BP1 WILD-TYPE" 
        TCGA-HZ-8315         TCGA-HZ-8317         TCGA-HZ-8636 
"UHRF1BP1 WILD-TYPE" "UHRF1BP1 WILD-TYPE" "UHRF1BP1 WILD-TYPE" 
        TCGA-HZ-8638         TCGA-HZ-A49G         TCGA-HZ-A49H 
"UHRF1BP1 WILD-TYPE" "UHRF1BP1 WILD-TYPE"   "UHRF1BP1 MUTATED" 
        TCGA-HZ-A4BH         TCGA-HZ-A4BK         TCGA-IB-7644 
  "UHRF1BP1 MUTATED" "UHRF1BP1 WILD-TYPE" "UHRF1BP1 WILD-TYPE" 
        TCGA-IB-7645         TCGA-IB-7646         TCGA-IB-7647 
"UHRF1BP1 WILD-TYPE" "UHRF1BP1 WILD-TYPE" "UHRF1BP1 WILD-TYPE" 
        TCGA-IB-7649         TCGA-IB-7651         TCGA-IB-7652 
"UHRF1BP1 WILD-TYPE"   "UHRF1BP1 MUTATED" "UHRF1BP1 WILD-TYPE" 
        TCGA-IB-7885         TCGA-IB-7886         TCGA-IB-7887 
"UHRF1BP1 WILD-TYPE" "UHRF1BP1 WILD-TYPE" "UHRF1BP1 WILD-TYPE" 
        TCGA-IB-7888         TCGA-IB-7889         TCGA-IB-7890 
"UHRF1BP1 WILD-TYPE" "UHRF1BP1 WILD-TYPE" "UHRF1BP1 WILD-TYPE" 
        TCGA-IB-7891         TCGA-IB-7893         TCGA-IB-7897 
"UHRF1BP1 WILD-TYPE" "UHRF1BP1 WILD-TYPE" "UHRF1BP1 WILD-TYPE" 
        TCGA-IB-8126         TCGA-IB-8127         TCGA-IB-A5SO 
"UHRF1BP1 WILD-TYPE"   "UHRF1BP1 MUTATED" "UHRF1BP1 WILD-TYPE" 
        TCGA-IB-A5SP         TCGA-IB-A5SQ         TCGA-IB-A5SS 
"UHRF1BP1 WILD-TYPE" "UHRF1BP1 WILD-TYPE" "UHRF1BP1 WILD-TYPE" 
        TCGA-IB-A5ST         TCGA-IB-A6UG         TCGA-LB-A7SX 
"UHRF1BP1 WILD-TYPE" "UHRF1BP1 WILD-TYPE" "UHRF1BP1 WILD-TYPE" 
        TCGA-OE-A75W         TCGA-PZ-A5RE         TCGA-Q3-A5QY 
"UHRF1BP1 WILD-TYPE" "UHRF1BP1 WILD-TYPE" "UHRF1BP1 WILD-TYPE" 
        TCGA-US-A779         TCGA-US-A77E         TCGA-US-A77J 
"UHRF1BP1 WILD-TYPE" "UHRF1BP1 WILD-TYPE" "UHRF1BP1 WILD-TYPE" 
[1] "hr=" "1.4"
D170V2, continuous
                    vv
clus                 STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  UHRF1BP1 MUTATED          0        0         0         9         0        0
  UHRF1BP1 WILD-TYPE        1        4        11        42         2        3
D170V3, multiclass
                    vv
clus                 T1+T2 T3+T4
  UHRF1BP1 MUTATED       0     9
  UHRF1BP1 WILD-TYPE     6    57
D170V4, multiclass
       clus
vv      UHRF1BP1 MUTATED UHRF1BP1 WILD-TYPE
  T1+T2                0                  6
  T3+T4                9                 57
D170V5, binary
                    cls
clus                  0  1
  UHRF1BP1 MUTATED    0  9
  UHRF1BP1 WILD-TYPE 17 45
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  UHRF1BP1 MUTATED      0    9
  UHRF1BP1 WILD-TYPE   17   45
   clus
vv  UHRF1BP1 MUTATED UHRF1BP1 WILD-TYPE
  0                0                 17
  1                9                 45
                    vv
clus                 M0 M1 MX
  UHRF1BP1 MUTATED    3  0  6
  UHRF1BP1 WILD-TYPE 36  3 24
D170V6, multiclass
    clus
vv   UHRF1BP1 MUTATED UHRF1BP1 WILD-TYPE
  M0                3                 36
  M1                0                  3
  MX                6                 24
D170V7, binary
                    cls
clus                  0  1
  UHRF1BP1 MUTATED    5  4
  UHRF1BP1 WILD-TYPE 31 32
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  UHRF1BP1 MUTATED      5    4
  UHRF1BP1 WILD-TYPE   31   32
        clus
vv       UHRF1BP1 MUTATED UHRF1BP1 WILD-TYPE
  FEMALE                5                 31
  MALE                  4                 32
                    vv
clus                 PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  UHRF1BP1 MUTATED                                     8
  UHRF1BP1 WILD-TYPE                                  57
                    vv
clus                 PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  UHRF1BP1 MUTATED                                       1
  UHRF1BP1 WILD-TYPE                                     3
                    vv
clus                 PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  UHRF1BP1 MUTATED                                                  0
  UHRF1BP1 WILD-TYPE                                                2
D170V8, multiclass
                                                  clus
vv                                                 UHRF1BP1 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                             8
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                           1
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                0
                                                  clus
vv                                                 UHRF1BP1 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                              57
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                             3
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                  2
D170V9, continuous
D170V10, continuous
[1] "Remove cluster labels:" "UHRF1BP1 MUTATED"      
clus
  UHRF1BP1 MUTATED UHRF1BP1 WILD-TYPE 
                 2                 17 
        TCGA-FB-A4P5         TCGA-FB-A4P6         TCGA-FB-A5VM 
"UHRF1BP1 WILD-TYPE" "UHRF1BP1 WILD-TYPE" "UHRF1BP1 WILD-TYPE" 
        TCGA-FB-A78T         TCGA-FB-A7DR         TCGA-H6-8124 
"UHRF1BP1 WILD-TYPE" "UHRF1BP1 WILD-TYPE" "UHRF1BP1 WILD-TYPE" 
        TCGA-H8-A6C1         TCGA-IB-7644         TCGA-IB-7649 
"UHRF1BP1 WILD-TYPE" "UHRF1BP1 WILD-TYPE" "UHRF1BP1 WILD-TYPE" 
        TCGA-IB-7885         TCGA-IB-7886         TCGA-IB-7891 
"UHRF1BP1 WILD-TYPE" "UHRF1BP1 WILD-TYPE" "UHRF1BP1 WILD-TYPE" 
        TCGA-IB-8126         TCGA-IB-A5SS         TCGA-IB-A6UG 
"UHRF1BP1 WILD-TYPE" "UHRF1BP1 WILD-TYPE" "UHRF1BP1 WILD-TYPE" 
        TCGA-LB-A7SX         TCGA-OE-A75W 
"UHRF1BP1 WILD-TYPE" "UHRF1BP1 WILD-TYPE" 
                    vv
clus                 R0 R1 RX
  UHRF1BP1 MUTATED    5  3  0
  UHRF1BP1 WILD-TYPE 37 21  2
D170V11, multiclass
    clus
vv   UHRF1BP1 MUTATED UHRF1BP1 WILD-TYPE
  R0                5                 37
  R1                3                 21
  RX                0                  2
D170V12, continuous

Clustering(171) Variable = TTK MUTATION ANALYSIS
D171V1, survival
               sevent
clus2            0  1
  TTK MUTATED    5  4
  TTK WILD-TYPE 35 25
  TTK MUTATED TTK WILD-TYPE 
            9            60 
  TTK MUTATED TTK WILD-TYPE 
            4            25 
$`TTK MUTATED`
TCGA-FB-A545 TCGA-H6-8124 TCGA-HZ-7924 TCGA-HZ-8002 TCGA-HZ-8317 TCGA-IB-7646 
       12.66        12.89        12.13         0.79         0.53         4.77 
TCGA-IB-7647 TCGA-IB-7651 TCGA-IB-7897 
       21.90        19.82        15.98 

$`TTK WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P5 TCGA-FB-A4P6 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR TCGA-FZ-5920 
        0.13        11.93         2.47         0.03         5.46         2.01 
TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7289 TCGA-HZ-7918 
       36.20        20.81         7.66        13.02         7.89         0.92 
TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8001 
        0.66         0.13         0.26        11.87         0.26         0.62 
TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G 
        0.69         3.95         0.92         0.16         2.99         0.76 
TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7649 
        0.95         6.38         1.51        11.41        49.38        15.35 
TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 
       15.65        27.98         4.04         3.62        43.79        15.81 
TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO 
       19.66        16.04         3.85         0.56        17.16        10.82 
TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX 
        9.86         7.20        15.12         0.26         1.35         4.18 
TCGA-OE-A75W TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
        3.62         8.12        13.68        16.80        14.14        18.67 

  TTK MUTATED TTK WILD-TYPE 
         0.53          0.03 
  TTK MUTATED TTK WILD-TYPE 
        21.90         49.38 
  TTK MUTATED TTK WILD-TYPE 
        12.66          7.15 
[1] "0.5 - 21.9 (12.7)" "0.0 - 49.4 (7.2)" 
   TCGA-F2-6879    TCGA-F2-6880    TCGA-F2-7273    TCGA-F2-7276    TCGA-F2-A44G 
"TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" 
   TCGA-F2-A44H    TCGA-FB-A4P5    TCGA-FB-A4P6    TCGA-FB-A545    TCGA-FB-A5VM 
"TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE"   "TTK MUTATED" "TTK WILD-TYPE" 
   TCGA-FB-A78T    TCGA-FB-A7DR    TCGA-FZ-5920    TCGA-FZ-5922    TCGA-FZ-5923 
"TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" 
   TCGA-H6-8124    TCGA-H6-A45N    TCGA-H8-A6C1    TCGA-HZ-7289    TCGA-HZ-7918 
  "TTK MUTATED" "TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" 
   TCGA-HZ-7919    TCGA-HZ-7922    TCGA-HZ-7923    TCGA-HZ-7924    TCGA-HZ-7925 
"TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE"   "TTK MUTATED" "TTK WILD-TYPE" 
   TCGA-HZ-7926    TCGA-HZ-8001    TCGA-HZ-8002    TCGA-HZ-8003    TCGA-HZ-8005 
"TTK WILD-TYPE" "TTK WILD-TYPE"   "TTK MUTATED" "TTK WILD-TYPE" "TTK WILD-TYPE" 
   TCGA-HZ-8315    TCGA-HZ-8317    TCGA-HZ-8636    TCGA-HZ-8638    TCGA-HZ-A49G 
"TTK WILD-TYPE"   "TTK MUTATED" "TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" 
   TCGA-HZ-A49H    TCGA-HZ-A4BH    TCGA-HZ-A4BK    TCGA-IB-7644    TCGA-IB-7645 
"TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" 
   TCGA-IB-7646    TCGA-IB-7647    TCGA-IB-7649    TCGA-IB-7651    TCGA-IB-7652 
  "TTK MUTATED"   "TTK MUTATED" "TTK WILD-TYPE"   "TTK MUTATED" "TTK WILD-TYPE" 
   TCGA-IB-7885    TCGA-IB-7886    TCGA-IB-7887    TCGA-IB-7888    TCGA-IB-7889 
"TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" 
   TCGA-IB-7890    TCGA-IB-7891    TCGA-IB-7893    TCGA-IB-7897    TCGA-IB-8126 
"TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE"   "TTK MUTATED" "TTK WILD-TYPE" 
   TCGA-IB-8127    TCGA-IB-A5SO    TCGA-IB-A5SP    TCGA-IB-A5SQ    TCGA-IB-A5SS 
"TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" 
   TCGA-IB-A5ST    TCGA-IB-A6UG    TCGA-LB-A7SX    TCGA-OE-A75W    TCGA-PZ-A5RE 
"TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" 
   TCGA-Q3-A5QY    TCGA-US-A779    TCGA-US-A77E    TCGA-US-A77J 
"TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" 
   TCGA-F2-6879    TCGA-F2-6880    TCGA-F2-7273    TCGA-F2-7276    TCGA-F2-A44G 
"TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" 
   TCGA-F2-A44H    TCGA-FB-A4P5    TCGA-FB-A4P6    TCGA-FB-A545    TCGA-FB-A5VM 
"TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE"   "TTK MUTATED" "TTK WILD-TYPE" 
   TCGA-FB-A78T    TCGA-FB-A7DR    TCGA-FZ-5920    TCGA-FZ-5922    TCGA-FZ-5923 
"TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" 
   TCGA-H6-8124    TCGA-H6-A45N    TCGA-H8-A6C1    TCGA-HZ-7289    TCGA-HZ-7918 
  "TTK MUTATED" "TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" 
   TCGA-HZ-7919    TCGA-HZ-7922    TCGA-HZ-7923    TCGA-HZ-7924    TCGA-HZ-7925 
"TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE"   "TTK MUTATED" "TTK WILD-TYPE" 
   TCGA-HZ-7926    TCGA-HZ-8001    TCGA-HZ-8002    TCGA-HZ-8003    TCGA-HZ-8005 
"TTK WILD-TYPE" "TTK WILD-TYPE"   "TTK MUTATED" "TTK WILD-TYPE" "TTK WILD-TYPE" 
   TCGA-HZ-8315    TCGA-HZ-8317    TCGA-HZ-8636    TCGA-HZ-8638    TCGA-HZ-A49G 
"TTK WILD-TYPE"   "TTK MUTATED" "TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" 
   TCGA-HZ-A49H    TCGA-HZ-A4BH    TCGA-HZ-A4BK    TCGA-IB-7644    TCGA-IB-7645 
"TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" 
   TCGA-IB-7646    TCGA-IB-7647    TCGA-IB-7649    TCGA-IB-7651    TCGA-IB-7652 
  "TTK MUTATED"   "TTK MUTATED" "TTK WILD-TYPE"   "TTK MUTATED" "TTK WILD-TYPE" 
   TCGA-IB-7885    TCGA-IB-7886    TCGA-IB-7887    TCGA-IB-7888    TCGA-IB-7889 
"TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" 
   TCGA-IB-7890    TCGA-IB-7891    TCGA-IB-7893    TCGA-IB-7897    TCGA-IB-8126 
"TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE"   "TTK MUTATED" "TTK WILD-TYPE" 
   TCGA-IB-8127    TCGA-IB-A5SO    TCGA-IB-A5SP    TCGA-IB-A5SQ    TCGA-IB-A5SS 
"TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" 
   TCGA-IB-A5ST    TCGA-IB-A6UG    TCGA-LB-A7SX    TCGA-OE-A75W    TCGA-PZ-A5RE 
"TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" 
   TCGA-Q3-A5QY    TCGA-US-A779    TCGA-US-A77E    TCGA-US-A77J 
"TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" 
   TCGA-F2-6879    TCGA-F2-6880    TCGA-F2-7273    TCGA-F2-7276    TCGA-F2-A44G 
"TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" 
   TCGA-F2-A44H    TCGA-FB-A4P5    TCGA-FB-A4P6    TCGA-FB-A545    TCGA-FB-A5VM 
"TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE"   "TTK MUTATED" "TTK WILD-TYPE" 
   TCGA-FB-A78T    TCGA-FB-A7DR    TCGA-FZ-5920    TCGA-FZ-5922    TCGA-FZ-5923 
"TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" 
   TCGA-H6-8124    TCGA-H6-A45N    TCGA-H8-A6C1    TCGA-HZ-7289    TCGA-HZ-7918 
  "TTK MUTATED" "TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" 
   TCGA-HZ-7919    TCGA-HZ-7922    TCGA-HZ-7923    TCGA-HZ-7924    TCGA-HZ-7925 
"TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE"   "TTK MUTATED" "TTK WILD-TYPE" 
   TCGA-HZ-7926    TCGA-HZ-8001    TCGA-HZ-8002    TCGA-HZ-8003    TCGA-HZ-8005 
"TTK WILD-TYPE" "TTK WILD-TYPE"   "TTK MUTATED" "TTK WILD-TYPE" "TTK WILD-TYPE" 
   TCGA-HZ-8315    TCGA-HZ-8317    TCGA-HZ-8636    TCGA-HZ-8638    TCGA-HZ-A49G 
"TTK WILD-TYPE"   "TTK MUTATED" "TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" 
   TCGA-HZ-A49H    TCGA-HZ-A4BH    TCGA-HZ-A4BK    TCGA-IB-7644    TCGA-IB-7645 
"TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" 
   TCGA-IB-7646    TCGA-IB-7647    TCGA-IB-7649    TCGA-IB-7651    TCGA-IB-7652 
  "TTK MUTATED"   "TTK MUTATED" "TTK WILD-TYPE"   "TTK MUTATED" "TTK WILD-TYPE" 
   TCGA-IB-7885    TCGA-IB-7886    TCGA-IB-7887    TCGA-IB-7888    TCGA-IB-7889 
"TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" 
   TCGA-IB-7890    TCGA-IB-7891    TCGA-IB-7893    TCGA-IB-7897    TCGA-IB-8126 
"TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE"   "TTK MUTATED" "TTK WILD-TYPE" 
   TCGA-IB-8127    TCGA-IB-A5SO    TCGA-IB-A5SP    TCGA-IB-A5SQ    TCGA-IB-A5SS 
"TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" 
   TCGA-IB-A5ST    TCGA-IB-A6UG    TCGA-LB-A7SX    TCGA-OE-A75W    TCGA-PZ-A5RE 
"TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" 
   TCGA-Q3-A5QY    TCGA-US-A779    TCGA-US-A77E    TCGA-US-A77J 
"TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" 
[1] "hr=" "1.2"
D171V2, continuous
               vv
clus            STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  TTK MUTATED          0        0         1         8         0        0
  TTK WILD-TYPE        1        4        10        43         2        3
D171V3, multiclass
               vv
clus            T1+T2 T3+T4
  TTK MUTATED       0     9
  TTK WILD-TYPE     6    57
D171V4, multiclass
       clus
vv      TTK MUTATED TTK WILD-TYPE
  T1+T2           0             6
  T3+T4           9            57
D171V5, binary
               cls
clus             0  1
  TTK MUTATED    1  8
  TTK WILD-TYPE 16 46
[1] "tbl2"
               cls
clus            [,1] [,2]
  TTK MUTATED      1    8
  TTK WILD-TYPE   16   46
   clus
vv  TTK MUTATED TTK WILD-TYPE
  0           1            16
  1           8            46
               vv
clus            M0 M1 MX
  TTK MUTATED    6  0  3
  TTK WILD-TYPE 33  3 27
D171V6, multiclass
    clus
vv   TTK MUTATED TTK WILD-TYPE
  M0           6            33
  M1           0             3
  MX           3            27
D171V7, binary
               cls
clus             0  1
  TTK MUTATED    7  2
  TTK WILD-TYPE 29 34
[1] "tbl2"
               cls
clus            [,1] [,2]
  TTK MUTATED      7    2
  TTK WILD-TYPE   29   34
        clus
vv       TTK MUTATED TTK WILD-TYPE
  FEMALE           7            29
  MALE             2            34
               vv
clus            PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  TTK MUTATED                                     9
  TTK WILD-TYPE                                  56
               vv
clus            PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  TTK MUTATED                                       0
  TTK WILD-TYPE                                     4
               vv
clus            PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  TTK MUTATED                                                  0
  TTK WILD-TYPE                                                2
D171V8, multiclass
                                                  clus
vv                                                 TTK MUTATED TTK WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                        9            56
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                      0             4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA           0             2
D171V9, continuous
[1] "Remove cluster labels:" "TTK MUTATED"           
clus
  TTK MUTATED TTK WILD-TYPE 
            2            20 
   TCGA-F2-6880    TCGA-FB-A4P5    TCGA-FB-A4P6    TCGA-FB-A5VM    TCGA-FB-A78T 
"TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" 
   TCGA-FB-A7DR    TCGA-H6-A45N    TCGA-H8-A6C1    TCGA-IB-7644    TCGA-IB-7649 
"TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" 
   TCGA-IB-7885    TCGA-IB-7886    TCGA-IB-7887    TCGA-IB-7891    TCGA-IB-8126 
"TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" 
   TCGA-IB-8127    TCGA-IB-A5SS    TCGA-IB-A6UG    TCGA-LB-A7SX    TCGA-OE-A75W 
"TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" 
D171V10, continuous
[1] "Remove cluster labels:" "TTK MUTATED"           
clus
  TTK MUTATED TTK WILD-TYPE 
            2            17 
   TCGA-FB-A4P5    TCGA-FB-A4P6    TCGA-FB-A5VM    TCGA-FB-A78T    TCGA-FB-A7DR 
"TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" 
   TCGA-H8-A6C1    TCGA-IB-7644    TCGA-IB-7649    TCGA-IB-7885    TCGA-IB-7886 
"TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" 
   TCGA-IB-7891    TCGA-IB-8126    TCGA-IB-8127    TCGA-IB-A5SS    TCGA-IB-A6UG 
"TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" 
   TCGA-LB-A7SX    TCGA-OE-A75W 
"TTK WILD-TYPE" "TTK WILD-TYPE" 
               vv
clus            R0 R1 RX
  TTK MUTATED    5  3  0
  TTK WILD-TYPE 37 21  2
D171V11, multiclass
    clus
vv   TTK MUTATED TTK WILD-TYPE
  R0           5            37
  R1           3            21
  RX           0             2
D171V12, continuous

Clustering(172) Variable = CCDC135 MUTATION ANALYSIS
D172V1, survival
                   sevent
clus2                0  1
  CCDC135 MUTATED    1  4
  CCDC135 WILD-TYPE 39 25
  CCDC135 MUTATED CCDC135 WILD-TYPE 
                5                64 
  CCDC135 MUTATED CCDC135 WILD-TYPE 
                4                25 
$`CCDC135 MUTATED`
TCGA-F2-6879 TCGA-HZ-8003 TCGA-IB-7644 TCGA-IB-7651 TCGA-IB-7888 
       10.98         0.69        11.41        19.82        43.79 

$`CCDC135 WILD-TYPE`
TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H TCGA-FB-A4P5 
        9.70        11.84         7.10         5.03        19.27         0.13 
TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR TCGA-FZ-5920 
       11.93        12.66         2.47         0.03         5.46         2.01 
TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7289 
       36.20        20.81        12.89         7.66        13.02         7.89 
TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 
        0.92         0.66         0.13         0.26        12.13        11.87 
TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 
        0.26         0.62         0.79         3.95         0.92         0.53 
TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK 
        0.16         2.99         0.76         0.95         6.38         1.51 
TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7652 TCGA-IB-7885 
       49.38         4.77        21.90        15.35        15.65        27.98 
TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-7893 
        4.04         3.62        15.81        19.66        16.04         3.85 
TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ 
       15.98         0.56        17.16        10.82         9.86         7.20 
TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W TCGA-PZ-A5RE 
       15.12         0.26         1.35         4.18         3.62         8.12 
TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
       13.68        16.80        14.14        18.67 

  CCDC135 MUTATED CCDC135 WILD-TYPE 
             0.69              0.03 
  CCDC135 MUTATED CCDC135 WILD-TYPE 
            43.79             49.38 
  CCDC135 MUTATED CCDC135 WILD-TYPE 
            11.41              7.15 
[1] "0.7 - 43.8 (11.4)" "0.0 - 49.4 (7.2)" 
       TCGA-F2-6879        TCGA-F2-6880        TCGA-F2-7273        TCGA-F2-7276 
  "CCDC135 MUTATED" "CCDC135 WILD-TYPE" "CCDC135 WILD-TYPE" "CCDC135 WILD-TYPE" 
       TCGA-F2-A44G        TCGA-F2-A44H        TCGA-FB-A4P5        TCGA-FB-A4P6 
"CCDC135 WILD-TYPE" "CCDC135 WILD-TYPE" "CCDC135 WILD-TYPE" "CCDC135 WILD-TYPE" 
       TCGA-FB-A545        TCGA-FB-A5VM        TCGA-FB-A78T        TCGA-FB-A7DR 
"CCDC135 WILD-TYPE" "CCDC135 WILD-TYPE" "CCDC135 WILD-TYPE" "CCDC135 WILD-TYPE" 
       TCGA-FZ-5920        TCGA-FZ-5922        TCGA-FZ-5923        TCGA-H6-8124 
"CCDC135 WILD-TYPE" "CCDC135 WILD-TYPE" "CCDC135 WILD-TYPE" "CCDC135 WILD-TYPE" 
       TCGA-H6-A45N        TCGA-H8-A6C1        TCGA-HZ-7289        TCGA-HZ-7918 
"CCDC135 WILD-TYPE" "CCDC135 WILD-TYPE" "CCDC135 WILD-TYPE" "CCDC135 WILD-TYPE" 
       TCGA-HZ-7919        TCGA-HZ-7922        TCGA-HZ-7923        TCGA-HZ-7924 
"CCDC135 WILD-TYPE" "CCDC135 WILD-TYPE" "CCDC135 WILD-TYPE" "CCDC135 WILD-TYPE" 
       TCGA-HZ-7925        TCGA-HZ-7926        TCGA-HZ-8001        TCGA-HZ-8002 
"CCDC135 WILD-TYPE" "CCDC135 WILD-TYPE" "CCDC135 WILD-TYPE" "CCDC135 WILD-TYPE" 
       TCGA-HZ-8003        TCGA-HZ-8005        TCGA-HZ-8315        TCGA-HZ-8317 
  "CCDC135 MUTATED" "CCDC135 WILD-TYPE" "CCDC135 WILD-TYPE" "CCDC135 WILD-TYPE" 
       TCGA-HZ-8636        TCGA-HZ-8638        TCGA-HZ-A49G        TCGA-HZ-A49H 
"CCDC135 WILD-TYPE" "CCDC135 WILD-TYPE" "CCDC135 WILD-TYPE" "CCDC135 WILD-TYPE" 
       TCGA-HZ-A4BH        TCGA-HZ-A4BK        TCGA-IB-7644        TCGA-IB-7645 
"CCDC135 WILD-TYPE" "CCDC135 WILD-TYPE"   "CCDC135 MUTATED" "CCDC135 WILD-TYPE" 
       TCGA-IB-7646        TCGA-IB-7647        TCGA-IB-7649        TCGA-IB-7651 
"CCDC135 WILD-TYPE" "CCDC135 WILD-TYPE" "CCDC135 WILD-TYPE"   "CCDC135 MUTATED" 
       TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-7886        TCGA-IB-7887 
"CCDC135 WILD-TYPE" "CCDC135 WILD-TYPE" "CCDC135 WILD-TYPE" "CCDC135 WILD-TYPE" 
       TCGA-IB-7888        TCGA-IB-7889        TCGA-IB-7890        TCGA-IB-7891 
  "CCDC135 MUTATED" "CCDC135 WILD-TYPE" "CCDC135 WILD-TYPE" "CCDC135 WILD-TYPE" 
       TCGA-IB-7893        TCGA-IB-7897        TCGA-IB-8126        TCGA-IB-8127 
"CCDC135 WILD-TYPE" "CCDC135 WILD-TYPE" "CCDC135 WILD-TYPE" "CCDC135 WILD-TYPE" 
       TCGA-IB-A5SO        TCGA-IB-A5SP        TCGA-IB-A5SQ        TCGA-IB-A5SS 
"CCDC135 WILD-TYPE" "CCDC135 WILD-TYPE" "CCDC135 WILD-TYPE" "CCDC135 WILD-TYPE" 
       TCGA-IB-A5ST        TCGA-IB-A6UG        TCGA-LB-A7SX        TCGA-OE-A75W 
"CCDC135 WILD-TYPE" "CCDC135 WILD-TYPE" "CCDC135 WILD-TYPE" "CCDC135 WILD-TYPE" 
       TCGA-PZ-A5RE        TCGA-Q3-A5QY        TCGA-US-A779        TCGA-US-A77E 
"CCDC135 WILD-TYPE" "CCDC135 WILD-TYPE" "CCDC135 WILD-TYPE" "CCDC135 WILD-TYPE" 
       TCGA-US-A77J 
"CCDC135 WILD-TYPE" 
       TCGA-F2-6879        TCGA-F2-6880        TCGA-F2-7273        TCGA-F2-7276 
  "CCDC135 MUTATED" "CCDC135 WILD-TYPE" "CCDC135 WILD-TYPE" "CCDC135 WILD-TYPE" 
       TCGA-F2-A44G        TCGA-F2-A44H        TCGA-FB-A4P5        TCGA-FB-A4P6 
"CCDC135 WILD-TYPE" "CCDC135 WILD-TYPE" "CCDC135 WILD-TYPE" "CCDC135 WILD-TYPE" 
       TCGA-FB-A545        TCGA-FB-A5VM        TCGA-FB-A78T        TCGA-FB-A7DR 
"CCDC135 WILD-TYPE" "CCDC135 WILD-TYPE" "CCDC135 WILD-TYPE" "CCDC135 WILD-TYPE" 
       TCGA-FZ-5920        TCGA-FZ-5922        TCGA-FZ-5923        TCGA-H6-8124 
"CCDC135 WILD-TYPE" "CCDC135 WILD-TYPE" "CCDC135 WILD-TYPE" "CCDC135 WILD-TYPE" 
       TCGA-H6-A45N        TCGA-H8-A6C1        TCGA-HZ-7289        TCGA-HZ-7918 
"CCDC135 WILD-TYPE" "CCDC135 WILD-TYPE" "CCDC135 WILD-TYPE" "CCDC135 WILD-TYPE" 
       TCGA-HZ-7919        TCGA-HZ-7922        TCGA-HZ-7923        TCGA-HZ-7924 
"CCDC135 WILD-TYPE" "CCDC135 WILD-TYPE" "CCDC135 WILD-TYPE" "CCDC135 WILD-TYPE" 
       TCGA-HZ-7925        TCGA-HZ-7926        TCGA-HZ-8001        TCGA-HZ-8002 
"CCDC135 WILD-TYPE" "CCDC135 WILD-TYPE" "CCDC135 WILD-TYPE" "CCDC135 WILD-TYPE" 
       TCGA-HZ-8003        TCGA-HZ-8005        TCGA-HZ-8315        TCGA-HZ-8317 
  "CCDC135 MUTATED" "CCDC135 WILD-TYPE" "CCDC135 WILD-TYPE" "CCDC135 WILD-TYPE" 
       TCGA-HZ-8636        TCGA-HZ-8638        TCGA-HZ-A49G        TCGA-HZ-A49H 
"CCDC135 WILD-TYPE" "CCDC135 WILD-TYPE" "CCDC135 WILD-TYPE" "CCDC135 WILD-TYPE" 
       TCGA-HZ-A4BH        TCGA-HZ-A4BK        TCGA-IB-7644        TCGA-IB-7645 
"CCDC135 WILD-TYPE" "CCDC135 WILD-TYPE"   "CCDC135 MUTATED" "CCDC135 WILD-TYPE" 
       TCGA-IB-7646        TCGA-IB-7647        TCGA-IB-7649        TCGA-IB-7651 
"CCDC135 WILD-TYPE" "CCDC135 WILD-TYPE" "CCDC135 WILD-TYPE"   "CCDC135 MUTATED" 
       TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-7886        TCGA-IB-7887 
"CCDC135 WILD-TYPE" "CCDC135 WILD-TYPE" "CCDC135 WILD-TYPE" "CCDC135 WILD-TYPE" 
       TCGA-IB-7888        TCGA-IB-7889        TCGA-IB-7890        TCGA-IB-7891 
  "CCDC135 MUTATED" "CCDC135 WILD-TYPE" "CCDC135 WILD-TYPE" "CCDC135 WILD-TYPE" 
       TCGA-IB-7893        TCGA-IB-7897        TCGA-IB-8126        TCGA-IB-8127 
"CCDC135 WILD-TYPE" "CCDC135 WILD-TYPE" "CCDC135 WILD-TYPE" "CCDC135 WILD-TYPE" 
       TCGA-IB-A5SO        TCGA-IB-A5SP        TCGA-IB-A5SQ        TCGA-IB-A5SS 
"CCDC135 WILD-TYPE" "CCDC135 WILD-TYPE" "CCDC135 WILD-TYPE" "CCDC135 WILD-TYPE" 
       TCGA-IB-A5ST        TCGA-IB-A6UG        TCGA-LB-A7SX        TCGA-OE-A75W 
"CCDC135 WILD-TYPE" "CCDC135 WILD-TYPE" "CCDC135 WILD-TYPE" "CCDC135 WILD-TYPE" 
       TCGA-PZ-A5RE        TCGA-Q3-A5QY        TCGA-US-A779        TCGA-US-A77E 
"CCDC135 WILD-TYPE" "CCDC135 WILD-TYPE" "CCDC135 WILD-TYPE" "CCDC135 WILD-TYPE" 
       TCGA-US-A77J 
"CCDC135 WILD-TYPE" 
       TCGA-F2-6879        TCGA-F2-6880        TCGA-F2-7273        TCGA-F2-7276 
  "CCDC135 MUTATED" "CCDC135 WILD-TYPE" "CCDC135 WILD-TYPE" "CCDC135 WILD-TYPE" 
       TCGA-F2-A44G        TCGA-F2-A44H        TCGA-FB-A4P5        TCGA-FB-A4P6 
"CCDC135 WILD-TYPE" "CCDC135 WILD-TYPE" "CCDC135 WILD-TYPE" "CCDC135 WILD-TYPE" 
       TCGA-FB-A545        TCGA-FB-A5VM        TCGA-FB-A78T        TCGA-FB-A7DR 
"CCDC135 WILD-TYPE" "CCDC135 WILD-TYPE" "CCDC135 WILD-TYPE" "CCDC135 WILD-TYPE" 
       TCGA-FZ-5920        TCGA-FZ-5922        TCGA-FZ-5923        TCGA-H6-8124 
"CCDC135 WILD-TYPE" "CCDC135 WILD-TYPE" "CCDC135 WILD-TYPE" "CCDC135 WILD-TYPE" 
       TCGA-H6-A45N        TCGA-H8-A6C1        TCGA-HZ-7289        TCGA-HZ-7918 
"CCDC135 WILD-TYPE" "CCDC135 WILD-TYPE" "CCDC135 WILD-TYPE" "CCDC135 WILD-TYPE" 
       TCGA-HZ-7919        TCGA-HZ-7922        TCGA-HZ-7923        TCGA-HZ-7924 
"CCDC135 WILD-TYPE" "CCDC135 WILD-TYPE" "CCDC135 WILD-TYPE" "CCDC135 WILD-TYPE" 
       TCGA-HZ-7925        TCGA-HZ-7926        TCGA-HZ-8001        TCGA-HZ-8002 
"CCDC135 WILD-TYPE" "CCDC135 WILD-TYPE" "CCDC135 WILD-TYPE" "CCDC135 WILD-TYPE" 
       TCGA-HZ-8003        TCGA-HZ-8005        TCGA-HZ-8315        TCGA-HZ-8317 
  "CCDC135 MUTATED" "CCDC135 WILD-TYPE" "CCDC135 WILD-TYPE" "CCDC135 WILD-TYPE" 
       TCGA-HZ-8636        TCGA-HZ-8638        TCGA-HZ-A49G        TCGA-HZ-A49H 
"CCDC135 WILD-TYPE" "CCDC135 WILD-TYPE" "CCDC135 WILD-TYPE" "CCDC135 WILD-TYPE" 
       TCGA-HZ-A4BH        TCGA-HZ-A4BK        TCGA-IB-7644        TCGA-IB-7645 
"CCDC135 WILD-TYPE" "CCDC135 WILD-TYPE"   "CCDC135 MUTATED" "CCDC135 WILD-TYPE" 
       TCGA-IB-7646        TCGA-IB-7647        TCGA-IB-7649        TCGA-IB-7651 
"CCDC135 WILD-TYPE" "CCDC135 WILD-TYPE" "CCDC135 WILD-TYPE"   "CCDC135 MUTATED" 
       TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-7886        TCGA-IB-7887 
"CCDC135 WILD-TYPE" "CCDC135 WILD-TYPE" "CCDC135 WILD-TYPE" "CCDC135 WILD-TYPE" 
       TCGA-IB-7888        TCGA-IB-7889        TCGA-IB-7890        TCGA-IB-7891 
  "CCDC135 MUTATED" "CCDC135 WILD-TYPE" "CCDC135 WILD-TYPE" "CCDC135 WILD-TYPE" 
       TCGA-IB-7893        TCGA-IB-7897        TCGA-IB-8126        TCGA-IB-8127 
"CCDC135 WILD-TYPE" "CCDC135 WILD-TYPE" "CCDC135 WILD-TYPE" "CCDC135 WILD-TYPE" 
       TCGA-IB-A5SO        TCGA-IB-A5SP        TCGA-IB-A5SQ        TCGA-IB-A5SS 
"CCDC135 WILD-TYPE" "CCDC135 WILD-TYPE" "CCDC135 WILD-TYPE" "CCDC135 WILD-TYPE" 
       TCGA-IB-A5ST        TCGA-IB-A6UG        TCGA-LB-A7SX        TCGA-OE-A75W 
"CCDC135 WILD-TYPE" "CCDC135 WILD-TYPE" "CCDC135 WILD-TYPE" "CCDC135 WILD-TYPE" 
       TCGA-PZ-A5RE        TCGA-Q3-A5QY        TCGA-US-A779        TCGA-US-A77E 
"CCDC135 WILD-TYPE" "CCDC135 WILD-TYPE" "CCDC135 WILD-TYPE" "CCDC135 WILD-TYPE" 
       TCGA-US-A77J 
"CCDC135 WILD-TYPE" 
[1] "hr=" "1"  
D172V2, continuous
                   vv
clus                STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  CCDC135 MUTATED          0        0         1         3         0        1
  CCDC135 WILD-TYPE        1        4        10        48         2        2
D172V3, multiclass
                   vv
clus                T1+T2 T3+T4
  CCDC135 MUTATED       0     5
  CCDC135 WILD-TYPE     6    61
D172V4, multiclass
       clus
vv      CCDC135 MUTATED CCDC135 WILD-TYPE
  T1+T2               0                 6
  T3+T4               5                61
D172V5, binary
                   cls
clus                 0  1
  CCDC135 MUTATED    1  4
  CCDC135 WILD-TYPE 16 50
[1] "tbl2"
                   cls
clus                [,1] [,2]
  CCDC135 MUTATED      1    4
  CCDC135 WILD-TYPE   16   50
   clus
vv  CCDC135 MUTATED CCDC135 WILD-TYPE
  0               1                16
  1               4                50
                   vv
clus                M0 M1 MX
  CCDC135 MUTATED    3  1  1
  CCDC135 WILD-TYPE 36  2 29
D172V6, multiclass
    clus
vv   CCDC135 MUTATED CCDC135 WILD-TYPE
  M0               3                36
  M1               1                 2
  MX               1                29
D172V7, binary
                   cls
clus                 0  1
  CCDC135 MUTATED    4  1
  CCDC135 WILD-TYPE 32 35
[1] "tbl2"
                   cls
clus                [,1] [,2]
  CCDC135 MUTATED      4    1
  CCDC135 WILD-TYPE   32   35
        clus
vv       CCDC135 MUTATED CCDC135 WILD-TYPE
  FEMALE               4                32
  MALE                 1                35
                   vv
clus                PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  CCDC135 MUTATED                                     4
  CCDC135 WILD-TYPE                                  61
                   vv
clus                PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  CCDC135 MUTATED                                       0
  CCDC135 WILD-TYPE                                     4
                   vv
clus                PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  CCDC135 MUTATED                                                  0
  CCDC135 WILD-TYPE                                                2
D172V8, multiclass
                                                  clus
vv                                                 CCDC135 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                            4
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                          0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA               0
                                                  clus
vv                                                 CCDC135 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                             61
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                            4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                 2
D172V9, continuous
[1] "Remove cluster labels:" "CCDC135 MUTATED"       
clus
  CCDC135 MUTATED CCDC135 WILD-TYPE 
                2                20 
       TCGA-F2-6880        TCGA-FB-A4P5        TCGA-FB-A4P6        TCGA-FB-A5VM 
"CCDC135 WILD-TYPE" "CCDC135 WILD-TYPE" "CCDC135 WILD-TYPE" "CCDC135 WILD-TYPE" 
       TCGA-FB-A78T        TCGA-FB-A7DR        TCGA-H6-8124        TCGA-H6-A45N 
"CCDC135 WILD-TYPE" "CCDC135 WILD-TYPE" "CCDC135 WILD-TYPE" "CCDC135 WILD-TYPE" 
       TCGA-H8-A6C1        TCGA-IB-7649        TCGA-IB-7885        TCGA-IB-7886 
"CCDC135 WILD-TYPE" "CCDC135 WILD-TYPE" "CCDC135 WILD-TYPE" "CCDC135 WILD-TYPE" 
       TCGA-IB-7887        TCGA-IB-7891        TCGA-IB-8126        TCGA-IB-8127 
"CCDC135 WILD-TYPE" "CCDC135 WILD-TYPE" "CCDC135 WILD-TYPE" "CCDC135 WILD-TYPE" 
       TCGA-IB-A5SS        TCGA-IB-A6UG        TCGA-LB-A7SX        TCGA-OE-A75W 
"CCDC135 WILD-TYPE" "CCDC135 WILD-TYPE" "CCDC135 WILD-TYPE" "CCDC135 WILD-TYPE" 
D172V10, continuous
[1] "Remove cluster labels:" "CCDC135 MUTATED"       
clus
  CCDC135 MUTATED CCDC135 WILD-TYPE 
                2                17 
       TCGA-FB-A4P5        TCGA-FB-A4P6        TCGA-FB-A5VM        TCGA-FB-A78T 
"CCDC135 WILD-TYPE" "CCDC135 WILD-TYPE" "CCDC135 WILD-TYPE" "CCDC135 WILD-TYPE" 
       TCGA-FB-A7DR        TCGA-H6-8124        TCGA-H8-A6C1        TCGA-IB-7649 
"CCDC135 WILD-TYPE" "CCDC135 WILD-TYPE" "CCDC135 WILD-TYPE" "CCDC135 WILD-TYPE" 
       TCGA-IB-7885        TCGA-IB-7886        TCGA-IB-7891        TCGA-IB-8126 
"CCDC135 WILD-TYPE" "CCDC135 WILD-TYPE" "CCDC135 WILD-TYPE" "CCDC135 WILD-TYPE" 
       TCGA-IB-8127        TCGA-IB-A5SS        TCGA-IB-A6UG        TCGA-LB-A7SX 
"CCDC135 WILD-TYPE" "CCDC135 WILD-TYPE" "CCDC135 WILD-TYPE" "CCDC135 WILD-TYPE" 
       TCGA-OE-A75W 
"CCDC135 WILD-TYPE" 
                   vv
clus                R0 R1 RX
  CCDC135 MUTATED    4  1  0
  CCDC135 WILD-TYPE 38 23  2
D172V11, multiclass
    clus
vv   CCDC135 MUTATED CCDC135 WILD-TYPE
  R0               4                38
  R1               1                23
  RX               0                 2
D172V12, continuous

Clustering(173) Variable = TNFRSF9 MUTATION ANALYSIS
D173V1, survival
                   sevent
clus2                0  1
  TNFRSF9 MUTATED    2  4
  TNFRSF9 WILD-TYPE 38 25
  TNFRSF9 MUTATED TNFRSF9 WILD-TYPE 
                6                63 
  TNFRSF9 MUTATED TNFRSF9 WILD-TYPE 
                4                25 
$`TNFRSF9 MUTATED`
TCGA-HZ-8003 TCGA-HZ-8005 TCGA-IB-7645 TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-7897 
        0.69         3.95        49.38        16.04         3.85        15.98 

$`TNFRSF9 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P5 TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR 
        0.13        11.93        12.66         2.47         0.03         5.46 
TCGA-FZ-5920 TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 
        2.01        36.20        20.81        12.89         7.66        13.02 
TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 
        7.89         0.92         0.66         0.13         0.26        12.13 
TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8315 TCGA-HZ-8317 
       11.87         0.26         0.62         0.79         0.92         0.53 
TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK 
        0.16         2.99         0.76         0.95         6.38         1.51 
TCGA-IB-7644 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7651 TCGA-IB-7652 
       11.41         4.77        21.90        15.35        19.82        15.65 
TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 
       27.98         4.04         3.62        43.79        15.81        19.66 
TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS 
        0.56        17.16        10.82         9.86         7.20        15.12 
TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W TCGA-PZ-A5RE TCGA-Q3-A5QY 
        0.26         1.35         4.18         3.62         8.12        13.68 
TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
       16.80        14.14        18.67 

  TNFRSF9 MUTATED TNFRSF9 WILD-TYPE 
             0.69              0.03 
  TNFRSF9 MUTATED TNFRSF9 WILD-TYPE 
            49.38             43.79 
  TNFRSF9 MUTATED TNFRSF9 WILD-TYPE 
            9.965             7.660 
[1] "0.7 - 49.4 (10.0)" "0.0 - 43.8 (7.7)" 
       TCGA-F2-6879        TCGA-F2-6880        TCGA-F2-7273        TCGA-F2-7276 
"TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" 
       TCGA-F2-A44G        TCGA-F2-A44H        TCGA-FB-A4P5        TCGA-FB-A4P6 
"TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" 
       TCGA-FB-A545        TCGA-FB-A5VM        TCGA-FB-A78T        TCGA-FB-A7DR 
"TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" 
       TCGA-FZ-5920        TCGA-FZ-5922        TCGA-FZ-5923        TCGA-H6-8124 
"TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" 
       TCGA-H6-A45N        TCGA-H8-A6C1        TCGA-HZ-7289        TCGA-HZ-7918 
"TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" 
       TCGA-HZ-7919        TCGA-HZ-7922        TCGA-HZ-7923        TCGA-HZ-7924 
"TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" 
       TCGA-HZ-7925        TCGA-HZ-7926        TCGA-HZ-8001        TCGA-HZ-8002 
"TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" 
       TCGA-HZ-8003        TCGA-HZ-8005        TCGA-HZ-8315        TCGA-HZ-8317 
  "TNFRSF9 MUTATED"   "TNFRSF9 MUTATED" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" 
       TCGA-HZ-8636        TCGA-HZ-8638        TCGA-HZ-A49G        TCGA-HZ-A49H 
"TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" 
       TCGA-HZ-A4BH        TCGA-HZ-A4BK        TCGA-IB-7644        TCGA-IB-7645 
"TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE"   "TNFRSF9 MUTATED" 
       TCGA-IB-7646        TCGA-IB-7647        TCGA-IB-7649        TCGA-IB-7651 
"TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" 
       TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-7886        TCGA-IB-7887 
"TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" 
       TCGA-IB-7888        TCGA-IB-7889        TCGA-IB-7890        TCGA-IB-7891 
"TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE"   "TNFRSF9 MUTATED" 
       TCGA-IB-7893        TCGA-IB-7897        TCGA-IB-8126        TCGA-IB-8127 
  "TNFRSF9 MUTATED"   "TNFRSF9 MUTATED" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" 
       TCGA-IB-A5SO        TCGA-IB-A5SP        TCGA-IB-A5SQ        TCGA-IB-A5SS 
"TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" 
       TCGA-IB-A5ST        TCGA-IB-A6UG        TCGA-LB-A7SX        TCGA-OE-A75W 
"TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" 
       TCGA-PZ-A5RE        TCGA-Q3-A5QY        TCGA-US-A779        TCGA-US-A77E 
"TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" 
       TCGA-US-A77J 
"TNFRSF9 WILD-TYPE" 
       TCGA-F2-6879        TCGA-F2-6880        TCGA-F2-7273        TCGA-F2-7276 
"TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" 
       TCGA-F2-A44G        TCGA-F2-A44H        TCGA-FB-A4P5        TCGA-FB-A4P6 
"TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" 
       TCGA-FB-A545        TCGA-FB-A5VM        TCGA-FB-A78T        TCGA-FB-A7DR 
"TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" 
       TCGA-FZ-5920        TCGA-FZ-5922        TCGA-FZ-5923        TCGA-H6-8124 
"TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" 
       TCGA-H6-A45N        TCGA-H8-A6C1        TCGA-HZ-7289        TCGA-HZ-7918 
"TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" 
       TCGA-HZ-7919        TCGA-HZ-7922        TCGA-HZ-7923        TCGA-HZ-7924 
"TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" 
       TCGA-HZ-7925        TCGA-HZ-7926        TCGA-HZ-8001        TCGA-HZ-8002 
"TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" 
       TCGA-HZ-8003        TCGA-HZ-8005        TCGA-HZ-8315        TCGA-HZ-8317 
  "TNFRSF9 MUTATED"   "TNFRSF9 MUTATED" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" 
       TCGA-HZ-8636        TCGA-HZ-8638        TCGA-HZ-A49G        TCGA-HZ-A49H 
"TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" 
       TCGA-HZ-A4BH        TCGA-HZ-A4BK        TCGA-IB-7644        TCGA-IB-7645 
"TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE"   "TNFRSF9 MUTATED" 
       TCGA-IB-7646        TCGA-IB-7647        TCGA-IB-7649        TCGA-IB-7651 
"TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" 
       TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-7886        TCGA-IB-7887 
"TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" 
       TCGA-IB-7888        TCGA-IB-7889        TCGA-IB-7890        TCGA-IB-7891 
"TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE"   "TNFRSF9 MUTATED" 
       TCGA-IB-7893        TCGA-IB-7897        TCGA-IB-8126        TCGA-IB-8127 
  "TNFRSF9 MUTATED"   "TNFRSF9 MUTATED" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" 
       TCGA-IB-A5SO        TCGA-IB-A5SP        TCGA-IB-A5SQ        TCGA-IB-A5SS 
"TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" 
       TCGA-IB-A5ST        TCGA-IB-A6UG        TCGA-LB-A7SX        TCGA-OE-A75W 
"TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" 
       TCGA-PZ-A5RE        TCGA-Q3-A5QY        TCGA-US-A779        TCGA-US-A77E 
"TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" 
       TCGA-US-A77J 
"TNFRSF9 WILD-TYPE" 
       TCGA-F2-6879        TCGA-F2-6880        TCGA-F2-7273        TCGA-F2-7276 
"TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" 
       TCGA-F2-A44G        TCGA-F2-A44H        TCGA-FB-A4P5        TCGA-FB-A4P6 
"TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" 
       TCGA-FB-A545        TCGA-FB-A5VM        TCGA-FB-A78T        TCGA-FB-A7DR 
"TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" 
       TCGA-FZ-5920        TCGA-FZ-5922        TCGA-FZ-5923        TCGA-H6-8124 
"TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" 
       TCGA-H6-A45N        TCGA-H8-A6C1        TCGA-HZ-7289        TCGA-HZ-7918 
"TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" 
       TCGA-HZ-7919        TCGA-HZ-7922        TCGA-HZ-7923        TCGA-HZ-7924 
"TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" 
       TCGA-HZ-7925        TCGA-HZ-7926        TCGA-HZ-8001        TCGA-HZ-8002 
"TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" 
       TCGA-HZ-8003        TCGA-HZ-8005        TCGA-HZ-8315        TCGA-HZ-8317 
  "TNFRSF9 MUTATED"   "TNFRSF9 MUTATED" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" 
       TCGA-HZ-8636        TCGA-HZ-8638        TCGA-HZ-A49G        TCGA-HZ-A49H 
"TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" 
       TCGA-HZ-A4BH        TCGA-HZ-A4BK        TCGA-IB-7644        TCGA-IB-7645 
"TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE"   "TNFRSF9 MUTATED" 
       TCGA-IB-7646        TCGA-IB-7647        TCGA-IB-7649        TCGA-IB-7651 
"TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" 
       TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-7886        TCGA-IB-7887 
"TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" 
       TCGA-IB-7888        TCGA-IB-7889        TCGA-IB-7890        TCGA-IB-7891 
"TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE"   "TNFRSF9 MUTATED" 
       TCGA-IB-7893        TCGA-IB-7897        TCGA-IB-8126        TCGA-IB-8127 
  "TNFRSF9 MUTATED"   "TNFRSF9 MUTATED" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" 
       TCGA-IB-A5SO        TCGA-IB-A5SP        TCGA-IB-A5SQ        TCGA-IB-A5SS 
"TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" 
       TCGA-IB-A5ST        TCGA-IB-A6UG        TCGA-LB-A7SX        TCGA-OE-A75W 
"TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" 
       TCGA-PZ-A5RE        TCGA-Q3-A5QY        TCGA-US-A779        TCGA-US-A77E 
"TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" 
       TCGA-US-A77J 
"TNFRSF9 WILD-TYPE" 
[1] "hr=" "1.4"
D173V2, continuous
                   vv
clus                STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  TNFRSF9 MUTATED          0        0         1         5         0        0
  TNFRSF9 WILD-TYPE        1        4        10        46         2        3
D173V3, multiclass
                   vv
clus                T1+T2 T3+T4
  TNFRSF9 MUTATED       0     6
  TNFRSF9 WILD-TYPE     6    60
D173V4, multiclass
       clus
vv      TNFRSF9 MUTATED TNFRSF9 WILD-TYPE
  T1+T2               0                 6
  T3+T4               6                60
D173V5, binary
                   cls
clus                 0  1
  TNFRSF9 MUTATED    1  5
  TNFRSF9 WILD-TYPE 16 49
[1] "tbl2"
                   cls
clus                [,1] [,2]
  TNFRSF9 MUTATED      1    5
  TNFRSF9 WILD-TYPE   16   49
   clus
vv  TNFRSF9 MUTATED TNFRSF9 WILD-TYPE
  0               1                16
  1               5                49
                   vv
clus                M0 M1 MX
  TNFRSF9 MUTATED    4  0  2
  TNFRSF9 WILD-TYPE 35  3 28
D173V6, multiclass
    clus
vv   TNFRSF9 MUTATED TNFRSF9 WILD-TYPE
  M0               4                35
  M1               0                 3
  MX               2                28
D173V7, binary
                   cls
clus                 0  1
  TNFRSF9 MUTATED    3  3
  TNFRSF9 WILD-TYPE 33 33
[1] "tbl2"
                   cls
clus                [,1] [,2]
  TNFRSF9 MUTATED      3    3
  TNFRSF9 WILD-TYPE   33   33
        clus
vv       TNFRSF9 MUTATED TNFRSF9 WILD-TYPE
  FEMALE               3                33
  MALE                 3                33
                   vv
clus                PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  TNFRSF9 MUTATED                                     6
  TNFRSF9 WILD-TYPE                                  59
                   vv
clus                PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  TNFRSF9 MUTATED                                       0
  TNFRSF9 WILD-TYPE                                     4
                   vv
clus                PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  TNFRSF9 MUTATED                                                  0
  TNFRSF9 WILD-TYPE                                                2
D173V8, multiclass
                                                  clus
vv                                                 TNFRSF9 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                            6
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                          0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA               0
                                                  clus
vv                                                 TNFRSF9 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                             59
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                            4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                 2
D173V9, continuous
[1] "Remove cluster labels:" "TNFRSF9 MUTATED"       
clus
  TNFRSF9 MUTATED TNFRSF9 WILD-TYPE 
                1                21 
       TCGA-F2-6880        TCGA-FB-A4P5        TCGA-FB-A4P6        TCGA-FB-A5VM 
"TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" 
       TCGA-FB-A78T        TCGA-FB-A7DR        TCGA-H6-8124        TCGA-H6-A45N 
"TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" 
       TCGA-H8-A6C1        TCGA-IB-7644        TCGA-IB-7649        TCGA-IB-7651 
"TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" 
       TCGA-IB-7885        TCGA-IB-7886        TCGA-IB-7887        TCGA-IB-8126 
"TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" 
       TCGA-IB-8127        TCGA-IB-A5SS        TCGA-IB-A6UG        TCGA-LB-A7SX 
"TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" 
       TCGA-OE-A75W 
"TNFRSF9 WILD-TYPE" 
D173V10, continuous
[1] "Remove cluster labels:" "TNFRSF9 MUTATED"       
clus
  TNFRSF9 MUTATED TNFRSF9 WILD-TYPE 
                1                18 
       TCGA-FB-A4P5        TCGA-FB-A4P6        TCGA-FB-A5VM        TCGA-FB-A78T 
"TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" 
       TCGA-FB-A7DR        TCGA-H6-8124        TCGA-H8-A6C1        TCGA-IB-7644 
"TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" 
       TCGA-IB-7649        TCGA-IB-7651        TCGA-IB-7885        TCGA-IB-7886 
"TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" 
       TCGA-IB-8126        TCGA-IB-8127        TCGA-IB-A5SS        TCGA-IB-A6UG 
"TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" 
       TCGA-LB-A7SX        TCGA-OE-A75W 
"TNFRSF9 WILD-TYPE" "TNFRSF9 WILD-TYPE" 
                   vv
clus                R0 R1 RX
  TNFRSF9 MUTATED    5  1  0
  TNFRSF9 WILD-TYPE 37 23  2
D173V11, multiclass
    clus
vv   TNFRSF9 MUTATED TNFRSF9 WILD-TYPE
  R0               5                37
  R1               1                23
  RX               0                 2
D173V12, continuous

Clustering(174) Variable = UBL4A MUTATION ANALYSIS
D174V1, survival
                 sevent
clus2              0  1
  UBL4A MUTATED    4  1
  UBL4A WILD-TYPE 36 28
  UBL4A MUTATED UBL4A WILD-TYPE 
              5              64 
  UBL4A MUTATED UBL4A WILD-TYPE 
              1              28 
$`UBL4A MUTATED`
TCGA-H6-8124 TCGA-HZ-7919 TCGA-HZ-8003 TCGA-IB-7888 TCGA-IB-8127 
       12.89         0.66         0.69        43.79        17.16 

$`UBL4A WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P5 TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR 
        0.13        11.93        12.66         2.47         0.03         5.46 
TCGA-FZ-5920 TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7289 
        2.01        36.20        20.81         7.66        13.02         7.89 
TCGA-HZ-7918 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 
        0.92         0.13         0.26        12.13        11.87         0.26 
TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8636 
        0.62         0.79         3.95         0.92         0.53         0.16 
TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 
        2.99         0.76         0.95         6.38         1.51        11.41 
TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7651 TCGA-IB-7652 
       49.38         4.77        21.90        15.35        19.82        15.65 
TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 
       27.98         4.04         3.62        15.81        19.66        16.04 
TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ 
        3.85        15.98         0.56        10.82         9.86         7.20 
TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W TCGA-PZ-A5RE 
       15.12         0.26         1.35         4.18         3.62         8.12 
TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
       13.68        16.80        14.14        18.67 

  UBL4A MUTATED UBL4A WILD-TYPE 
           0.66            0.03 
  UBL4A MUTATED UBL4A WILD-TYPE 
          43.79           49.38 
  UBL4A MUTATED UBL4A WILD-TYPE 
          12.89            7.43 
[1] "0.7 - 43.8 (12.9)" "0.0 - 49.4 (7.4)" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"UBL4A WILD-TYPE" "UBL4A WILD-TYPE" "UBL4A WILD-TYPE" "UBL4A WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"UBL4A WILD-TYPE" "UBL4A WILD-TYPE" "UBL4A WILD-TYPE" "UBL4A WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"UBL4A WILD-TYPE" "UBL4A WILD-TYPE" "UBL4A WILD-TYPE" "UBL4A WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"UBL4A WILD-TYPE" "UBL4A WILD-TYPE" "UBL4A WILD-TYPE"   "UBL4A MUTATED" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"UBL4A WILD-TYPE" "UBL4A WILD-TYPE" "UBL4A WILD-TYPE" "UBL4A WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
  "UBL4A MUTATED" "UBL4A WILD-TYPE" "UBL4A WILD-TYPE" "UBL4A WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"UBL4A WILD-TYPE" "UBL4A WILD-TYPE" "UBL4A WILD-TYPE" "UBL4A WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
  "UBL4A MUTATED" "UBL4A WILD-TYPE" "UBL4A WILD-TYPE" "UBL4A WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"UBL4A WILD-TYPE" "UBL4A WILD-TYPE" "UBL4A WILD-TYPE" "UBL4A WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"UBL4A WILD-TYPE" "UBL4A WILD-TYPE" "UBL4A WILD-TYPE" "UBL4A WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"UBL4A WILD-TYPE" "UBL4A WILD-TYPE" "UBL4A WILD-TYPE" "UBL4A WILD-TYPE" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"UBL4A WILD-TYPE" "UBL4A WILD-TYPE" "UBL4A WILD-TYPE" "UBL4A WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
  "UBL4A MUTATED" "UBL4A WILD-TYPE" "UBL4A WILD-TYPE" "UBL4A WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"UBL4A WILD-TYPE" "UBL4A WILD-TYPE" "UBL4A WILD-TYPE"   "UBL4A MUTATED" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"UBL4A WILD-TYPE" "UBL4A WILD-TYPE" "UBL4A WILD-TYPE" "UBL4A WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"UBL4A WILD-TYPE" "UBL4A WILD-TYPE" "UBL4A WILD-TYPE" "UBL4A WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"UBL4A WILD-TYPE" "UBL4A WILD-TYPE" "UBL4A WILD-TYPE" "UBL4A WILD-TYPE" 
     TCGA-US-A77J 
"UBL4A WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"UBL4A WILD-TYPE" "UBL4A WILD-TYPE" "UBL4A WILD-TYPE" "UBL4A WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"UBL4A WILD-TYPE" "UBL4A WILD-TYPE" "UBL4A WILD-TYPE" "UBL4A WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"UBL4A WILD-TYPE" "UBL4A WILD-TYPE" "UBL4A WILD-TYPE" "UBL4A WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"UBL4A WILD-TYPE" "UBL4A WILD-TYPE" "UBL4A WILD-TYPE"   "UBL4A MUTATED" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"UBL4A WILD-TYPE" "UBL4A WILD-TYPE" "UBL4A WILD-TYPE" "UBL4A WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
  "UBL4A MUTATED" "UBL4A WILD-TYPE" "UBL4A WILD-TYPE" "UBL4A WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"UBL4A WILD-TYPE" "UBL4A WILD-TYPE" "UBL4A WILD-TYPE" "UBL4A WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
  "UBL4A MUTATED" "UBL4A WILD-TYPE" "UBL4A WILD-TYPE" "UBL4A WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"UBL4A WILD-TYPE" "UBL4A WILD-TYPE" "UBL4A WILD-TYPE" "UBL4A WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"UBL4A WILD-TYPE" "UBL4A WILD-TYPE" "UBL4A WILD-TYPE" "UBL4A WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"UBL4A WILD-TYPE" "UBL4A WILD-TYPE" "UBL4A WILD-TYPE" "UBL4A WILD-TYPE" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"UBL4A WILD-TYPE" "UBL4A WILD-TYPE" "UBL4A WILD-TYPE" "UBL4A WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
  "UBL4A MUTATED" "UBL4A WILD-TYPE" "UBL4A WILD-TYPE" "UBL4A WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"UBL4A WILD-TYPE" "UBL4A WILD-TYPE" "UBL4A WILD-TYPE"   "UBL4A MUTATED" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"UBL4A WILD-TYPE" "UBL4A WILD-TYPE" "UBL4A WILD-TYPE" "UBL4A WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"UBL4A WILD-TYPE" "UBL4A WILD-TYPE" "UBL4A WILD-TYPE" "UBL4A WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"UBL4A WILD-TYPE" "UBL4A WILD-TYPE" "UBL4A WILD-TYPE" "UBL4A WILD-TYPE" 
     TCGA-US-A77J 
"UBL4A WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"UBL4A WILD-TYPE" "UBL4A WILD-TYPE" "UBL4A WILD-TYPE" "UBL4A WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"UBL4A WILD-TYPE" "UBL4A WILD-TYPE" "UBL4A WILD-TYPE" "UBL4A WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"UBL4A WILD-TYPE" "UBL4A WILD-TYPE" "UBL4A WILD-TYPE" "UBL4A WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"UBL4A WILD-TYPE" "UBL4A WILD-TYPE" "UBL4A WILD-TYPE"   "UBL4A MUTATED" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"UBL4A WILD-TYPE" "UBL4A WILD-TYPE" "UBL4A WILD-TYPE" "UBL4A WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
  "UBL4A MUTATED" "UBL4A WILD-TYPE" "UBL4A WILD-TYPE" "UBL4A WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"UBL4A WILD-TYPE" "UBL4A WILD-TYPE" "UBL4A WILD-TYPE" "UBL4A WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
  "UBL4A MUTATED" "UBL4A WILD-TYPE" "UBL4A WILD-TYPE" "UBL4A WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"UBL4A WILD-TYPE" "UBL4A WILD-TYPE" "UBL4A WILD-TYPE" "UBL4A WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"UBL4A WILD-TYPE" "UBL4A WILD-TYPE" "UBL4A WILD-TYPE" "UBL4A WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"UBL4A WILD-TYPE" "UBL4A WILD-TYPE" "UBL4A WILD-TYPE" "UBL4A WILD-TYPE" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"UBL4A WILD-TYPE" "UBL4A WILD-TYPE" "UBL4A WILD-TYPE" "UBL4A WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
  "UBL4A MUTATED" "UBL4A WILD-TYPE" "UBL4A WILD-TYPE" "UBL4A WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"UBL4A WILD-TYPE" "UBL4A WILD-TYPE" "UBL4A WILD-TYPE"   "UBL4A MUTATED" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"UBL4A WILD-TYPE" "UBL4A WILD-TYPE" "UBL4A WILD-TYPE" "UBL4A WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"UBL4A WILD-TYPE" "UBL4A WILD-TYPE" "UBL4A WILD-TYPE" "UBL4A WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"UBL4A WILD-TYPE" "UBL4A WILD-TYPE" "UBL4A WILD-TYPE" "UBL4A WILD-TYPE" 
     TCGA-US-A77J 
"UBL4A WILD-TYPE" 
[1] "hr=" "4.2"
D174V2, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  UBL4A MUTATED          0        0         1         4         0        0
  UBL4A WILD-TYPE        1        4        10        47         2        3
D174V3, multiclass
                 vv
clus              T1+T2 T3+T4
  UBL4A MUTATED       0     5
  UBL4A WILD-TYPE     6    61
D174V4, multiclass
       clus
vv      UBL4A MUTATED UBL4A WILD-TYPE
  T1+T2             0               6
  T3+T4             5              61
D174V5, binary
                 cls
clus               0  1
  UBL4A MUTATED    1  4
  UBL4A WILD-TYPE 16 50
[1] "tbl2"
                 cls
clus              [,1] [,2]
  UBL4A MUTATED      1    4
  UBL4A WILD-TYPE   16   50
   clus
vv  UBL4A MUTATED UBL4A WILD-TYPE
  0             1              16
  1             4              50
                 vv
clus              M0 M1 MX
  UBL4A MUTATED    4  0  1
  UBL4A WILD-TYPE 35  3 29
D174V6, multiclass
    clus
vv   UBL4A MUTATED UBL4A WILD-TYPE
  M0             4              35
  M1             0               3
  MX             1              29
D174V7, binary
                 cls
clus               0  1
  UBL4A MUTATED    4  1
  UBL4A WILD-TYPE 32 35
[1] "tbl2"
                 cls
clus              [,1] [,2]
  UBL4A MUTATED      4    1
  UBL4A WILD-TYPE   32   35
        clus
vv       UBL4A MUTATED UBL4A WILD-TYPE
  FEMALE             4              32
  MALE               1              35
                 vv
clus              PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  UBL4A MUTATED                                     5
  UBL4A WILD-TYPE                                  60
                 vv
clus              PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  UBL4A MUTATED                                       0
  UBL4A WILD-TYPE                                     4
                 vv
clus              PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  UBL4A MUTATED                                                  0
  UBL4A WILD-TYPE                                                2
D174V8, multiclass
                                                  clus
vv                                                 UBL4A MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                          5
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                        0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA             0
                                                  clus
vv                                                 UBL4A WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                           60
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                          4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA               2
D174V9, continuous
[1] "Remove cluster labels:" "UBL4A MUTATED"         
clus
  UBL4A MUTATED UBL4A WILD-TYPE 
              2              20 
     TCGA-F2-6880      TCGA-FB-A4P5      TCGA-FB-A4P6      TCGA-FB-A5VM 
"UBL4A WILD-TYPE" "UBL4A WILD-TYPE" "UBL4A WILD-TYPE" "UBL4A WILD-TYPE" 
     TCGA-FB-A78T      TCGA-FB-A7DR      TCGA-H6-A45N      TCGA-H8-A6C1 
"UBL4A WILD-TYPE" "UBL4A WILD-TYPE" "UBL4A WILD-TYPE" "UBL4A WILD-TYPE" 
     TCGA-IB-7644      TCGA-IB-7649      TCGA-IB-7651      TCGA-IB-7885 
"UBL4A WILD-TYPE" "UBL4A WILD-TYPE" "UBL4A WILD-TYPE" "UBL4A WILD-TYPE" 
     TCGA-IB-7886      TCGA-IB-7887      TCGA-IB-7891      TCGA-IB-8126 
"UBL4A WILD-TYPE" "UBL4A WILD-TYPE" "UBL4A WILD-TYPE" "UBL4A WILD-TYPE" 
     TCGA-IB-A5SS      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"UBL4A WILD-TYPE" "UBL4A WILD-TYPE" "UBL4A WILD-TYPE" "UBL4A WILD-TYPE" 
D174V10, continuous
[1] "Remove cluster labels:" "UBL4A MUTATED"         
clus
  UBL4A MUTATED UBL4A WILD-TYPE 
              2              17 
     TCGA-FB-A4P5      TCGA-FB-A4P6      TCGA-FB-A5VM      TCGA-FB-A78T 
"UBL4A WILD-TYPE" "UBL4A WILD-TYPE" "UBL4A WILD-TYPE" "UBL4A WILD-TYPE" 
     TCGA-FB-A7DR      TCGA-H8-A6C1      TCGA-IB-7644      TCGA-IB-7649 
"UBL4A WILD-TYPE" "UBL4A WILD-TYPE" "UBL4A WILD-TYPE" "UBL4A WILD-TYPE" 
     TCGA-IB-7651      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7891 
"UBL4A WILD-TYPE" "UBL4A WILD-TYPE" "UBL4A WILD-TYPE" "UBL4A WILD-TYPE" 
     TCGA-IB-8126      TCGA-IB-A5SS      TCGA-IB-A6UG      TCGA-LB-A7SX 
"UBL4A WILD-TYPE" "UBL4A WILD-TYPE" "UBL4A WILD-TYPE" "UBL4A WILD-TYPE" 
     TCGA-OE-A75W 
"UBL4A WILD-TYPE" 
                 vv
clus              R0 R1 RX
  UBL4A MUTATED    3  2  0
  UBL4A WILD-TYPE 39 22  2
D174V11, multiclass
    clus
vv   UBL4A MUTATED UBL4A WILD-TYPE
  R0             3              39
  R1             2              22
  RX             0               2
D174V12, continuous

Clustering(175) Variable = PURB MUTATION ANALYSIS
D175V1, survival
                sevent
clus2             0  1
  PURB MUTATED    5  1
  PURB WILD-TYPE 35 28
  PURB MUTATED PURB WILD-TYPE 
             6             63 
  PURB MUTATED PURB WILD-TYPE 
             1             28 
$`PURB MUTATED`
TCGA-F2-6880 TCGA-F2-7276 TCGA-HZ-7289 TCGA-HZ-7919 TCGA-HZ-7924 TCGA-HZ-8317 
        9.70         7.10         7.89         0.66        12.13         0.53 

$`PURB WILD-TYPE`
TCGA-F2-6879 TCGA-F2-7273 TCGA-F2-A44G TCGA-F2-A44H TCGA-FB-A4P5 TCGA-FB-A4P6 
       10.98        11.84         5.03        19.27         0.13        11.93 
TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR TCGA-FZ-5920 TCGA-FZ-5922 
       12.66         2.47         0.03         5.46         2.01        36.20 
TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7918 TCGA-HZ-7922 
       20.81        12.89         7.66        13.02         0.92         0.13 
TCGA-HZ-7923 TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 
        0.26        11.87         0.26         0.62         0.79         0.69 
TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H 
        3.95         0.92         0.16         2.99         0.76         0.95 
TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 
        6.38         1.51        11.41        49.38         4.77        21.90 
TCGA-IB-7649 TCGA-IB-7651 TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 
       15.35        19.82        15.65        27.98         4.04         3.62 
TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-7897 
       43.79        15.81        19.66        16.04         3.85        15.98 
TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS 
        0.56        17.16        10.82         9.86         7.20        15.12 
TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W TCGA-PZ-A5RE TCGA-Q3-A5QY 
        0.26         1.35         4.18         3.62         8.12        13.68 
TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
       16.80        14.14        18.67 

  PURB MUTATED PURB WILD-TYPE 
          0.53           0.03 
  PURB MUTATED PURB WILD-TYPE 
         12.13          49.38 
  PURB MUTATED PURB WILD-TYPE 
         7.495          7.660 
[1] "0.5 - 12.1 (7.5)" "0.0 - 49.4 (7.7)"
    TCGA-F2-6879     TCGA-F2-6880     TCGA-F2-7273     TCGA-F2-7276 
"PURB WILD-TYPE"   "PURB MUTATED" "PURB WILD-TYPE"   "PURB MUTATED" 
    TCGA-F2-A44G     TCGA-F2-A44H     TCGA-FB-A4P5     TCGA-FB-A4P6 
"PURB WILD-TYPE" "PURB WILD-TYPE" "PURB WILD-TYPE" "PURB WILD-TYPE" 
    TCGA-FB-A545     TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-FB-A7DR 
"PURB WILD-TYPE" "PURB WILD-TYPE" "PURB WILD-TYPE" "PURB WILD-TYPE" 
    TCGA-FZ-5920     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-H6-8124 
"PURB WILD-TYPE" "PURB WILD-TYPE" "PURB WILD-TYPE" "PURB WILD-TYPE" 
    TCGA-H6-A45N     TCGA-H8-A6C1     TCGA-HZ-7289     TCGA-HZ-7918 
"PURB WILD-TYPE" "PURB WILD-TYPE"   "PURB MUTATED" "PURB WILD-TYPE" 
    TCGA-HZ-7919     TCGA-HZ-7922     TCGA-HZ-7923     TCGA-HZ-7924 
  "PURB MUTATED" "PURB WILD-TYPE" "PURB WILD-TYPE"   "PURB MUTATED" 
    TCGA-HZ-7925     TCGA-HZ-7926     TCGA-HZ-8001     TCGA-HZ-8002 
"PURB WILD-TYPE" "PURB WILD-TYPE" "PURB WILD-TYPE" "PURB WILD-TYPE" 
    TCGA-HZ-8003     TCGA-HZ-8005     TCGA-HZ-8315     TCGA-HZ-8317 
"PURB WILD-TYPE" "PURB WILD-TYPE" "PURB WILD-TYPE"   "PURB MUTATED" 
    TCGA-HZ-8636     TCGA-HZ-8638     TCGA-HZ-A49G     TCGA-HZ-A49H 
"PURB WILD-TYPE" "PURB WILD-TYPE" "PURB WILD-TYPE" "PURB WILD-TYPE" 
    TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-IB-7644     TCGA-IB-7645 
"PURB WILD-TYPE" "PURB WILD-TYPE" "PURB WILD-TYPE" "PURB WILD-TYPE" 
    TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7651 
"PURB WILD-TYPE" "PURB WILD-TYPE" "PURB WILD-TYPE" "PURB WILD-TYPE" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887 
"PURB WILD-TYPE" "PURB WILD-TYPE" "PURB WILD-TYPE" "PURB WILD-TYPE" 
    TCGA-IB-7888     TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891 
"PURB WILD-TYPE" "PURB WILD-TYPE" "PURB WILD-TYPE" "PURB WILD-TYPE" 
    TCGA-IB-7893     TCGA-IB-7897     TCGA-IB-8126     TCGA-IB-8127 
"PURB WILD-TYPE" "PURB WILD-TYPE" "PURB WILD-TYPE" "PURB WILD-TYPE" 
    TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS 
"PURB WILD-TYPE" "PURB WILD-TYPE" "PURB WILD-TYPE" "PURB WILD-TYPE" 
    TCGA-IB-A5ST     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
"PURB WILD-TYPE" "PURB WILD-TYPE" "PURB WILD-TYPE" "PURB WILD-TYPE" 
    TCGA-PZ-A5RE     TCGA-Q3-A5QY     TCGA-US-A779     TCGA-US-A77E 
"PURB WILD-TYPE" "PURB WILD-TYPE" "PURB WILD-TYPE" "PURB WILD-TYPE" 
    TCGA-US-A77J 
"PURB WILD-TYPE" 
    TCGA-F2-6879     TCGA-F2-6880     TCGA-F2-7273     TCGA-F2-7276 
"PURB WILD-TYPE"   "PURB MUTATED" "PURB WILD-TYPE"   "PURB MUTATED" 
    TCGA-F2-A44G     TCGA-F2-A44H     TCGA-FB-A4P5     TCGA-FB-A4P6 
"PURB WILD-TYPE" "PURB WILD-TYPE" "PURB WILD-TYPE" "PURB WILD-TYPE" 
    TCGA-FB-A545     TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-FB-A7DR 
"PURB WILD-TYPE" "PURB WILD-TYPE" "PURB WILD-TYPE" "PURB WILD-TYPE" 
    TCGA-FZ-5920     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-H6-8124 
"PURB WILD-TYPE" "PURB WILD-TYPE" "PURB WILD-TYPE" "PURB WILD-TYPE" 
    TCGA-H6-A45N     TCGA-H8-A6C1     TCGA-HZ-7289     TCGA-HZ-7918 
"PURB WILD-TYPE" "PURB WILD-TYPE"   "PURB MUTATED" "PURB WILD-TYPE" 
    TCGA-HZ-7919     TCGA-HZ-7922     TCGA-HZ-7923     TCGA-HZ-7924 
  "PURB MUTATED" "PURB WILD-TYPE" "PURB WILD-TYPE"   "PURB MUTATED" 
    TCGA-HZ-7925     TCGA-HZ-7926     TCGA-HZ-8001     TCGA-HZ-8002 
"PURB WILD-TYPE" "PURB WILD-TYPE" "PURB WILD-TYPE" "PURB WILD-TYPE" 
    TCGA-HZ-8003     TCGA-HZ-8005     TCGA-HZ-8315     TCGA-HZ-8317 
"PURB WILD-TYPE" "PURB WILD-TYPE" "PURB WILD-TYPE"   "PURB MUTATED" 
    TCGA-HZ-8636     TCGA-HZ-8638     TCGA-HZ-A49G     TCGA-HZ-A49H 
"PURB WILD-TYPE" "PURB WILD-TYPE" "PURB WILD-TYPE" "PURB WILD-TYPE" 
    TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-IB-7644     TCGA-IB-7645 
"PURB WILD-TYPE" "PURB WILD-TYPE" "PURB WILD-TYPE" "PURB WILD-TYPE" 
    TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7651 
"PURB WILD-TYPE" "PURB WILD-TYPE" "PURB WILD-TYPE" "PURB WILD-TYPE" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887 
"PURB WILD-TYPE" "PURB WILD-TYPE" "PURB WILD-TYPE" "PURB WILD-TYPE" 
    TCGA-IB-7888     TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891 
"PURB WILD-TYPE" "PURB WILD-TYPE" "PURB WILD-TYPE" "PURB WILD-TYPE" 
    TCGA-IB-7893     TCGA-IB-7897     TCGA-IB-8126     TCGA-IB-8127 
"PURB WILD-TYPE" "PURB WILD-TYPE" "PURB WILD-TYPE" "PURB WILD-TYPE" 
    TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS 
"PURB WILD-TYPE" "PURB WILD-TYPE" "PURB WILD-TYPE" "PURB WILD-TYPE" 
    TCGA-IB-A5ST     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
"PURB WILD-TYPE" "PURB WILD-TYPE" "PURB WILD-TYPE" "PURB WILD-TYPE" 
    TCGA-PZ-A5RE     TCGA-Q3-A5QY     TCGA-US-A779     TCGA-US-A77E 
"PURB WILD-TYPE" "PURB WILD-TYPE" "PURB WILD-TYPE" "PURB WILD-TYPE" 
    TCGA-US-A77J 
"PURB WILD-TYPE" 
    TCGA-F2-6879     TCGA-F2-6880     TCGA-F2-7273     TCGA-F2-7276 
"PURB WILD-TYPE"   "PURB MUTATED" "PURB WILD-TYPE"   "PURB MUTATED" 
    TCGA-F2-A44G     TCGA-F2-A44H     TCGA-FB-A4P5     TCGA-FB-A4P6 
"PURB WILD-TYPE" "PURB WILD-TYPE" "PURB WILD-TYPE" "PURB WILD-TYPE" 
    TCGA-FB-A545     TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-FB-A7DR 
"PURB WILD-TYPE" "PURB WILD-TYPE" "PURB WILD-TYPE" "PURB WILD-TYPE" 
    TCGA-FZ-5920     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-H6-8124 
"PURB WILD-TYPE" "PURB WILD-TYPE" "PURB WILD-TYPE" "PURB WILD-TYPE" 
    TCGA-H6-A45N     TCGA-H8-A6C1     TCGA-HZ-7289     TCGA-HZ-7918 
"PURB WILD-TYPE" "PURB WILD-TYPE"   "PURB MUTATED" "PURB WILD-TYPE" 
    TCGA-HZ-7919     TCGA-HZ-7922     TCGA-HZ-7923     TCGA-HZ-7924 
  "PURB MUTATED" "PURB WILD-TYPE" "PURB WILD-TYPE"   "PURB MUTATED" 
    TCGA-HZ-7925     TCGA-HZ-7926     TCGA-HZ-8001     TCGA-HZ-8002 
"PURB WILD-TYPE" "PURB WILD-TYPE" "PURB WILD-TYPE" "PURB WILD-TYPE" 
    TCGA-HZ-8003     TCGA-HZ-8005     TCGA-HZ-8315     TCGA-HZ-8317 
"PURB WILD-TYPE" "PURB WILD-TYPE" "PURB WILD-TYPE"   "PURB MUTATED" 
    TCGA-HZ-8636     TCGA-HZ-8638     TCGA-HZ-A49G     TCGA-HZ-A49H 
"PURB WILD-TYPE" "PURB WILD-TYPE" "PURB WILD-TYPE" "PURB WILD-TYPE" 
    TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-IB-7644     TCGA-IB-7645 
"PURB WILD-TYPE" "PURB WILD-TYPE" "PURB WILD-TYPE" "PURB WILD-TYPE" 
    TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7651 
"PURB WILD-TYPE" "PURB WILD-TYPE" "PURB WILD-TYPE" "PURB WILD-TYPE" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887 
"PURB WILD-TYPE" "PURB WILD-TYPE" "PURB WILD-TYPE" "PURB WILD-TYPE" 
    TCGA-IB-7888     TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891 
"PURB WILD-TYPE" "PURB WILD-TYPE" "PURB WILD-TYPE" "PURB WILD-TYPE" 
    TCGA-IB-7893     TCGA-IB-7897     TCGA-IB-8126     TCGA-IB-8127 
"PURB WILD-TYPE" "PURB WILD-TYPE" "PURB WILD-TYPE" "PURB WILD-TYPE" 
    TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS 
"PURB WILD-TYPE" "PURB WILD-TYPE" "PURB WILD-TYPE" "PURB WILD-TYPE" 
    TCGA-IB-A5ST     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
"PURB WILD-TYPE" "PURB WILD-TYPE" "PURB WILD-TYPE" "PURB WILD-TYPE" 
    TCGA-PZ-A5RE     TCGA-Q3-A5QY     TCGA-US-A779     TCGA-US-A77E 
"PURB WILD-TYPE" "PURB WILD-TYPE" "PURB WILD-TYPE" "PURB WILD-TYPE" 
    TCGA-US-A77J 
"PURB WILD-TYPE" 
[1] "hr=" "1.2"
D175V2, continuous
                vv
clus             STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  PURB MUTATED          0        0         1         5         0        0
  PURB WILD-TYPE        1        4        10        46         2        3
D175V3, multiclass
                vv
clus             T1+T2 T3+T4
  PURB MUTATED       0     6
  PURB WILD-TYPE     6    60
D175V4, multiclass
       clus
vv      PURB MUTATED PURB WILD-TYPE
  T1+T2            0              6
  T3+T4            6             60
D175V5, binary
                cls
clus              0  1
  PURB MUTATED    1  5
  PURB WILD-TYPE 16 49
[1] "tbl2"
                cls
clus             [,1] [,2]
  PURB MUTATED      1    5
  PURB WILD-TYPE   16   49
   clus
vv  PURB MUTATED PURB WILD-TYPE
  0            1             16
  1            5             49
                vv
clus             M0 M1 MX
  PURB MUTATED    3  0  3
  PURB WILD-TYPE 36  3 27
D175V6, multiclass
    clus
vv   PURB MUTATED PURB WILD-TYPE
  M0            3             36
  M1            0              3
  MX            3             27
D175V7, binary
                cls
clus              0  1
  PURB MUTATED    3  3
  PURB WILD-TYPE 33 33
[1] "tbl2"
                cls
clus             [,1] [,2]
  PURB MUTATED      3    3
  PURB WILD-TYPE   33   33
        clus
vv       PURB MUTATED PURB WILD-TYPE
  FEMALE            3             33
  MALE              3             33
                vv
clus             PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  PURB MUTATED                                     5
  PURB WILD-TYPE                                  60
                vv
clus             PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  PURB MUTATED                                       1
  PURB WILD-TYPE                                     3
                vv
clus             PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  PURB MUTATED                                                  0
  PURB WILD-TYPE                                                2
D175V8, multiclass
                                                  clus
vv                                                 PURB MUTATED PURB WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                         5             60
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                       1              3
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA            0              2
D175V9, continuous
[1] "Remove cluster labels:" "PURB MUTATED"          
clus
  PURB MUTATED PURB WILD-TYPE 
             1             21 
    TCGA-FB-A4P5     TCGA-FB-A4P6     TCGA-FB-A5VM     TCGA-FB-A78T 
"PURB WILD-TYPE" "PURB WILD-TYPE" "PURB WILD-TYPE" "PURB WILD-TYPE" 
    TCGA-FB-A7DR     TCGA-H6-8124     TCGA-H6-A45N     TCGA-H8-A6C1 
"PURB WILD-TYPE" "PURB WILD-TYPE" "PURB WILD-TYPE" "PURB WILD-TYPE" 
    TCGA-IB-7644     TCGA-IB-7649     TCGA-IB-7651     TCGA-IB-7885 
"PURB WILD-TYPE" "PURB WILD-TYPE" "PURB WILD-TYPE" "PURB WILD-TYPE" 
    TCGA-IB-7886     TCGA-IB-7887     TCGA-IB-7891     TCGA-IB-8126 
"PURB WILD-TYPE" "PURB WILD-TYPE" "PURB WILD-TYPE" "PURB WILD-TYPE" 
    TCGA-IB-8127     TCGA-IB-A5SS     TCGA-IB-A6UG     TCGA-LB-A7SX 
"PURB WILD-TYPE" "PURB WILD-TYPE" "PURB WILD-TYPE" "PURB WILD-TYPE" 
    TCGA-OE-A75W 
"PURB WILD-TYPE" 
D175V10, continuous
                vv
clus             R0 R1 RX
  PURB MUTATED    3  2  1
  PURB WILD-TYPE 39 22  1
D175V11, multiclass
    clus
vv   PURB MUTATED PURB WILD-TYPE
  R0            3             39
  R1            2             22
  RX            1              1
D175V12, continuous

Clustering(176) Variable = GABBR1 MUTATION ANALYSIS
D176V1, survival
                  sevent
clus2               0  1
  GABBR1 MUTATED    2  7
  GABBR1 WILD-TYPE 38 22
  GABBR1 MUTATED GABBR1 WILD-TYPE 
               9               60 
  GABBR1 MUTATED GABBR1 WILD-TYPE 
               7               22 
$`GABBR1 MUTATED`
TCGA-F2-7276 TCGA-H6-A45N TCGA-HZ-8315 TCGA-IB-7645 TCGA-IB-7651 TCGA-IB-7887 
        7.10         7.66         0.92        49.38        19.82         3.62 
TCGA-IB-7893 TCGA-IB-8126 TCGA-US-A77E 
        3.85         0.56        14.14 

$`GABBR1 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-A44G TCGA-F2-A44H TCGA-FB-A4P5 
       10.98         9.70        11.84         5.03        19.27         0.13 
TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR TCGA-FZ-5920 
       11.93        12.66         2.47         0.03         5.46         2.01 
TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 TCGA-H8-A6C1 TCGA-HZ-7289 TCGA-HZ-7918 
       36.20        20.81        12.89        13.02         7.89         0.92 
TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 
        0.66         0.13         0.26        12.13        11.87         0.26 
TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8317 TCGA-HZ-8636 
        0.62         0.79         0.69         3.95         0.53         0.16 
TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 
        2.99         0.76         0.95         6.38         1.51        11.41 
TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7886 
        4.77        21.90        15.35        15.65        27.98         4.04 
TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-7897 TCGA-IB-8127 
       43.79        15.81        19.66        16.04        15.98        17.16 
TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG 
       10.82         9.86         7.20        15.12         0.26         1.35 
TCGA-LB-A7SX TCGA-OE-A75W TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77J 
        4.18         3.62         8.12        13.68        16.80        18.67 

  GABBR1 MUTATED GABBR1 WILD-TYPE 
            0.56             0.03 
  GABBR1 MUTATED GABBR1 WILD-TYPE 
           49.38            43.79 
  GABBR1 MUTATED GABBR1 WILD-TYPE 
           7.100            8.005 
[1] "0.6 - 49.4 (7.1)" "0.0 - 43.8 (8.0)"
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
"GABBR1 WILD-TYPE" "GABBR1 WILD-TYPE" "GABBR1 WILD-TYPE"   "GABBR1 MUTATED" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"GABBR1 WILD-TYPE" "GABBR1 WILD-TYPE" "GABBR1 WILD-TYPE" "GABBR1 WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
"GABBR1 WILD-TYPE" "GABBR1 WILD-TYPE" "GABBR1 WILD-TYPE" "GABBR1 WILD-TYPE" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"GABBR1 WILD-TYPE" "GABBR1 WILD-TYPE" "GABBR1 WILD-TYPE" "GABBR1 WILD-TYPE" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
  "GABBR1 MUTATED" "GABBR1 WILD-TYPE" "GABBR1 WILD-TYPE" "GABBR1 WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
"GABBR1 WILD-TYPE" "GABBR1 WILD-TYPE" "GABBR1 WILD-TYPE" "GABBR1 WILD-TYPE" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"GABBR1 WILD-TYPE" "GABBR1 WILD-TYPE" "GABBR1 WILD-TYPE" "GABBR1 WILD-TYPE" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
"GABBR1 WILD-TYPE" "GABBR1 WILD-TYPE"   "GABBR1 MUTATED" "GABBR1 WILD-TYPE" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
"GABBR1 WILD-TYPE" "GABBR1 WILD-TYPE" "GABBR1 WILD-TYPE" "GABBR1 WILD-TYPE" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
"GABBR1 WILD-TYPE" "GABBR1 WILD-TYPE" "GABBR1 WILD-TYPE"   "GABBR1 MUTATED" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
"GABBR1 WILD-TYPE" "GABBR1 WILD-TYPE" "GABBR1 WILD-TYPE"   "GABBR1 MUTATED" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
"GABBR1 WILD-TYPE" "GABBR1 WILD-TYPE" "GABBR1 WILD-TYPE"   "GABBR1 MUTATED" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
"GABBR1 WILD-TYPE" "GABBR1 WILD-TYPE" "GABBR1 WILD-TYPE" "GABBR1 WILD-TYPE" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
  "GABBR1 MUTATED" "GABBR1 WILD-TYPE"   "GABBR1 MUTATED" "GABBR1 WILD-TYPE" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"GABBR1 WILD-TYPE" "GABBR1 WILD-TYPE" "GABBR1 WILD-TYPE" "GABBR1 WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"GABBR1 WILD-TYPE" "GABBR1 WILD-TYPE" "GABBR1 WILD-TYPE" "GABBR1 WILD-TYPE" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
"GABBR1 WILD-TYPE" "GABBR1 WILD-TYPE" "GABBR1 WILD-TYPE"   "GABBR1 MUTATED" 
      TCGA-US-A77J 
"GABBR1 WILD-TYPE" 
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
"GABBR1 WILD-TYPE" "GABBR1 WILD-TYPE" "GABBR1 WILD-TYPE"   "GABBR1 MUTATED" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"GABBR1 WILD-TYPE" "GABBR1 WILD-TYPE" "GABBR1 WILD-TYPE" "GABBR1 WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
"GABBR1 WILD-TYPE" "GABBR1 WILD-TYPE" "GABBR1 WILD-TYPE" "GABBR1 WILD-TYPE" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"GABBR1 WILD-TYPE" "GABBR1 WILD-TYPE" "GABBR1 WILD-TYPE" "GABBR1 WILD-TYPE" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
  "GABBR1 MUTATED" "GABBR1 WILD-TYPE" "GABBR1 WILD-TYPE" "GABBR1 WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
"GABBR1 WILD-TYPE" "GABBR1 WILD-TYPE" "GABBR1 WILD-TYPE" "GABBR1 WILD-TYPE" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"GABBR1 WILD-TYPE" "GABBR1 WILD-TYPE" "GABBR1 WILD-TYPE" "GABBR1 WILD-TYPE" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
"GABBR1 WILD-TYPE" "GABBR1 WILD-TYPE"   "GABBR1 MUTATED" "GABBR1 WILD-TYPE" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
"GABBR1 WILD-TYPE" "GABBR1 WILD-TYPE" "GABBR1 WILD-TYPE" "GABBR1 WILD-TYPE" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
"GABBR1 WILD-TYPE" "GABBR1 WILD-TYPE" "GABBR1 WILD-TYPE"   "GABBR1 MUTATED" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
"GABBR1 WILD-TYPE" "GABBR1 WILD-TYPE" "GABBR1 WILD-TYPE"   "GABBR1 MUTATED" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
"GABBR1 WILD-TYPE" "GABBR1 WILD-TYPE" "GABBR1 WILD-TYPE"   "GABBR1 MUTATED" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
"GABBR1 WILD-TYPE" "GABBR1 WILD-TYPE" "GABBR1 WILD-TYPE" "GABBR1 WILD-TYPE" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
  "GABBR1 MUTATED" "GABBR1 WILD-TYPE"   "GABBR1 MUTATED" "GABBR1 WILD-TYPE" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"GABBR1 WILD-TYPE" "GABBR1 WILD-TYPE" "GABBR1 WILD-TYPE" "GABBR1 WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"GABBR1 WILD-TYPE" "GABBR1 WILD-TYPE" "GABBR1 WILD-TYPE" "GABBR1 WILD-TYPE" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
"GABBR1 WILD-TYPE" "GABBR1 WILD-TYPE" "GABBR1 WILD-TYPE"   "GABBR1 MUTATED" 
      TCGA-US-A77J 
"GABBR1 WILD-TYPE" 
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
"GABBR1 WILD-TYPE" "GABBR1 WILD-TYPE" "GABBR1 WILD-TYPE"   "GABBR1 MUTATED" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"GABBR1 WILD-TYPE" "GABBR1 WILD-TYPE" "GABBR1 WILD-TYPE" "GABBR1 WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
"GABBR1 WILD-TYPE" "GABBR1 WILD-TYPE" "GABBR1 WILD-TYPE" "GABBR1 WILD-TYPE" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"GABBR1 WILD-TYPE" "GABBR1 WILD-TYPE" "GABBR1 WILD-TYPE" "GABBR1 WILD-TYPE" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
  "GABBR1 MUTATED" "GABBR1 WILD-TYPE" "GABBR1 WILD-TYPE" "GABBR1 WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
"GABBR1 WILD-TYPE" "GABBR1 WILD-TYPE" "GABBR1 WILD-TYPE" "GABBR1 WILD-TYPE" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"GABBR1 WILD-TYPE" "GABBR1 WILD-TYPE" "GABBR1 WILD-TYPE" "GABBR1 WILD-TYPE" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
"GABBR1 WILD-TYPE" "GABBR1 WILD-TYPE"   "GABBR1 MUTATED" "GABBR1 WILD-TYPE" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
"GABBR1 WILD-TYPE" "GABBR1 WILD-TYPE" "GABBR1 WILD-TYPE" "GABBR1 WILD-TYPE" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
"GABBR1 WILD-TYPE" "GABBR1 WILD-TYPE" "GABBR1 WILD-TYPE"   "GABBR1 MUTATED" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
"GABBR1 WILD-TYPE" "GABBR1 WILD-TYPE" "GABBR1 WILD-TYPE"   "GABBR1 MUTATED" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
"GABBR1 WILD-TYPE" "GABBR1 WILD-TYPE" "GABBR1 WILD-TYPE"   "GABBR1 MUTATED" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
"GABBR1 WILD-TYPE" "GABBR1 WILD-TYPE" "GABBR1 WILD-TYPE" "GABBR1 WILD-TYPE" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
  "GABBR1 MUTATED" "GABBR1 WILD-TYPE"   "GABBR1 MUTATED" "GABBR1 WILD-TYPE" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"GABBR1 WILD-TYPE" "GABBR1 WILD-TYPE" "GABBR1 WILD-TYPE" "GABBR1 WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"GABBR1 WILD-TYPE" "GABBR1 WILD-TYPE" "GABBR1 WILD-TYPE" "GABBR1 WILD-TYPE" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
"GABBR1 WILD-TYPE" "GABBR1 WILD-TYPE" "GABBR1 WILD-TYPE"   "GABBR1 MUTATED" 
      TCGA-US-A77J 
"GABBR1 WILD-TYPE" 
[1] "hr=" "1.4"
D176V2, continuous
                  vv
clus               STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  GABBR1 MUTATED          0        0         2         6         1        0
  GABBR1 WILD-TYPE        1        4         9        45         1        3
D176V3, multiclass
                  vv
clus               T1+T2 T3+T4
  GABBR1 MUTATED       0     9
  GABBR1 WILD-TYPE     6    57
D176V4, multiclass
       clus
vv      GABBR1 MUTATED GABBR1 WILD-TYPE
  T1+T2              0                6
  T3+T4              9               57
D176V5, binary
                  cls
clus                0  1
  GABBR1 MUTATED    2  7
  GABBR1 WILD-TYPE 15 47
[1] "tbl2"
                  cls
clus               [,1] [,2]
  GABBR1 MUTATED      2    7
  GABBR1 WILD-TYPE   15   47
   clus
vv  GABBR1 MUTATED GABBR1 WILD-TYPE
  0              2               15
  1              7               47
                  vv
clus               M0 M1 MX
  GABBR1 MUTATED    6  0  3
  GABBR1 WILD-TYPE 33  3 27
D176V6, multiclass
    clus
vv   GABBR1 MUTATED GABBR1 WILD-TYPE
  M0              6               33
  M1              0                3
  MX              3               27
D176V7, binary
                  cls
clus                0  1
  GABBR1 MUTATED    6  3
  GABBR1 WILD-TYPE 30 33
[1] "tbl2"
                  cls
clus               [,1] [,2]
  GABBR1 MUTATED      6    3
  GABBR1 WILD-TYPE   30   33
        clus
vv       GABBR1 MUTATED GABBR1 WILD-TYPE
  FEMALE              6               30
  MALE                3               33
                  vv
clus               PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  GABBR1 MUTATED                                     8
  GABBR1 WILD-TYPE                                  57
                  vv
clus               PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  GABBR1 MUTATED                                       1
  GABBR1 WILD-TYPE                                     3
                  vv
clus               PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  GABBR1 MUTATED                                                  0
  GABBR1 WILD-TYPE                                                2
D176V8, multiclass
                                                  clus
vv                                                 GABBR1 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                           8
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                         1
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA              0
                                                  clus
vv                                                 GABBR1 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                            57
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                           3
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                2
D176V9, continuous
D176V10, continuous
[1] "Remove cluster labels:" "GABBR1 MUTATED"        
clus
  GABBR1 MUTATED GABBR1 WILD-TYPE 
               2               17 
      TCGA-FB-A4P5       TCGA-FB-A4P6       TCGA-FB-A5VM       TCGA-FB-A78T 
"GABBR1 WILD-TYPE" "GABBR1 WILD-TYPE" "GABBR1 WILD-TYPE" "GABBR1 WILD-TYPE" 
      TCGA-FB-A7DR       TCGA-H6-8124       TCGA-H8-A6C1       TCGA-IB-7644 
"GABBR1 WILD-TYPE" "GABBR1 WILD-TYPE" "GABBR1 WILD-TYPE" "GABBR1 WILD-TYPE" 
      TCGA-IB-7649       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7891 
"GABBR1 WILD-TYPE" "GABBR1 WILD-TYPE" "GABBR1 WILD-TYPE" "GABBR1 WILD-TYPE" 
      TCGA-IB-8127       TCGA-IB-A5SS       TCGA-IB-A6UG       TCGA-LB-A7SX 
"GABBR1 WILD-TYPE" "GABBR1 WILD-TYPE" "GABBR1 WILD-TYPE" "GABBR1 WILD-TYPE" 
      TCGA-OE-A75W 
"GABBR1 WILD-TYPE" 
                  vv
clus               R0 R1 RX
  GABBR1 MUTATED    4  4  0
  GABBR1 WILD-TYPE 38 20  2
D176V11, multiclass
    clus
vv   GABBR1 MUTATED GABBR1 WILD-TYPE
  R0              4               38
  R1              4               20
  RX              0                2
D176V12, continuous

Clustering(177) Variable = ADAM30 MUTATION ANALYSIS
D177V1, survival
                  sevent
clus2               0  1
  ADAM30 MUTATED    4  3
  ADAM30 WILD-TYPE 36 26
  ADAM30 MUTATED ADAM30 WILD-TYPE 
               7               62 
  ADAM30 MUTATED ADAM30 WILD-TYPE 
               3               26 
$`ADAM30 MUTATED`
TCGA-F2-7273 TCGA-F2-A44H TCGA-HZ-7919 TCGA-HZ-8636 TCGA-HZ-A4BK TCGA-IB-7888 
       11.84        19.27         0.66         0.16         1.51        43.79 
TCGA-IB-7897 
       15.98 

$`ADAM30 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7276 TCGA-F2-A44G TCGA-FB-A4P5 TCGA-FB-A4P6 
       10.98         9.70         7.10         5.03         0.13        11.93 
TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR TCGA-FZ-5920 TCGA-FZ-5922 
       12.66         2.47         0.03         5.46         2.01        36.20 
TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7289 TCGA-HZ-7918 
       20.81        12.89         7.66        13.02         7.89         0.92 
TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8001 
        0.13         0.26        12.13        11.87         0.26         0.62 
TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8638 
        0.79         0.69         3.95         0.92         0.53         2.99 
TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7646 
        0.76         0.95         6.38        11.41        49.38         4.77 
TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7651 TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7886 
       21.90        15.35        19.82        15.65        27.98         4.04 
TCGA-IB-7887 TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-8126 
        3.62        15.81        19.66        16.04         3.85         0.56 
TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST 
       17.16        10.82         9.86         7.20        15.12         0.26 
TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 
        1.35         4.18         3.62         8.12        13.68        16.80 
TCGA-US-A77E TCGA-US-A77J 
       14.14        18.67 

  ADAM30 MUTATED ADAM30 WILD-TYPE 
            0.16             0.03 
  ADAM30 MUTATED ADAM30 WILD-TYPE 
           43.79            49.38 
  ADAM30 MUTATED ADAM30 WILD-TYPE 
           11.84             7.43 
[1] "0.2 - 43.8 (11.8)" "0.0 - 49.4 (7.4)" 
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
"ADAM30 WILD-TYPE" "ADAM30 WILD-TYPE"   "ADAM30 MUTATED" "ADAM30 WILD-TYPE" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"ADAM30 WILD-TYPE"   "ADAM30 MUTATED" "ADAM30 WILD-TYPE" "ADAM30 WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
"ADAM30 WILD-TYPE" "ADAM30 WILD-TYPE" "ADAM30 WILD-TYPE" "ADAM30 WILD-TYPE" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"ADAM30 WILD-TYPE" "ADAM30 WILD-TYPE" "ADAM30 WILD-TYPE" "ADAM30 WILD-TYPE" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
"ADAM30 WILD-TYPE" "ADAM30 WILD-TYPE" "ADAM30 WILD-TYPE" "ADAM30 WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
  "ADAM30 MUTATED" "ADAM30 WILD-TYPE" "ADAM30 WILD-TYPE" "ADAM30 WILD-TYPE" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"ADAM30 WILD-TYPE" "ADAM30 WILD-TYPE" "ADAM30 WILD-TYPE" "ADAM30 WILD-TYPE" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
"ADAM30 WILD-TYPE" "ADAM30 WILD-TYPE" "ADAM30 WILD-TYPE" "ADAM30 WILD-TYPE" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
  "ADAM30 MUTATED" "ADAM30 WILD-TYPE" "ADAM30 WILD-TYPE" "ADAM30 WILD-TYPE" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
"ADAM30 WILD-TYPE"   "ADAM30 MUTATED" "ADAM30 WILD-TYPE" "ADAM30 WILD-TYPE" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
"ADAM30 WILD-TYPE" "ADAM30 WILD-TYPE" "ADAM30 WILD-TYPE" "ADAM30 WILD-TYPE" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
"ADAM30 WILD-TYPE" "ADAM30 WILD-TYPE" "ADAM30 WILD-TYPE" "ADAM30 WILD-TYPE" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
  "ADAM30 MUTATED" "ADAM30 WILD-TYPE" "ADAM30 WILD-TYPE" "ADAM30 WILD-TYPE" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
"ADAM30 WILD-TYPE"   "ADAM30 MUTATED" "ADAM30 WILD-TYPE" "ADAM30 WILD-TYPE" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"ADAM30 WILD-TYPE" "ADAM30 WILD-TYPE" "ADAM30 WILD-TYPE" "ADAM30 WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"ADAM30 WILD-TYPE" "ADAM30 WILD-TYPE" "ADAM30 WILD-TYPE" "ADAM30 WILD-TYPE" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
"ADAM30 WILD-TYPE" "ADAM30 WILD-TYPE" "ADAM30 WILD-TYPE" "ADAM30 WILD-TYPE" 
      TCGA-US-A77J 
"ADAM30 WILD-TYPE" 
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
"ADAM30 WILD-TYPE" "ADAM30 WILD-TYPE"   "ADAM30 MUTATED" "ADAM30 WILD-TYPE" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"ADAM30 WILD-TYPE"   "ADAM30 MUTATED" "ADAM30 WILD-TYPE" "ADAM30 WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
"ADAM30 WILD-TYPE" "ADAM30 WILD-TYPE" "ADAM30 WILD-TYPE" "ADAM30 WILD-TYPE" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"ADAM30 WILD-TYPE" "ADAM30 WILD-TYPE" "ADAM30 WILD-TYPE" "ADAM30 WILD-TYPE" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
"ADAM30 WILD-TYPE" "ADAM30 WILD-TYPE" "ADAM30 WILD-TYPE" "ADAM30 WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
  "ADAM30 MUTATED" "ADAM30 WILD-TYPE" "ADAM30 WILD-TYPE" "ADAM30 WILD-TYPE" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"ADAM30 WILD-TYPE" "ADAM30 WILD-TYPE" "ADAM30 WILD-TYPE" "ADAM30 WILD-TYPE" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
"ADAM30 WILD-TYPE" "ADAM30 WILD-TYPE" "ADAM30 WILD-TYPE" "ADAM30 WILD-TYPE" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
  "ADAM30 MUTATED" "ADAM30 WILD-TYPE" "ADAM30 WILD-TYPE" "ADAM30 WILD-TYPE" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
"ADAM30 WILD-TYPE"   "ADAM30 MUTATED" "ADAM30 WILD-TYPE" "ADAM30 WILD-TYPE" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
"ADAM30 WILD-TYPE" "ADAM30 WILD-TYPE" "ADAM30 WILD-TYPE" "ADAM30 WILD-TYPE" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
"ADAM30 WILD-TYPE" "ADAM30 WILD-TYPE" "ADAM30 WILD-TYPE" "ADAM30 WILD-TYPE" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
  "ADAM30 MUTATED" "ADAM30 WILD-TYPE" "ADAM30 WILD-TYPE" "ADAM30 WILD-TYPE" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
"ADAM30 WILD-TYPE"   "ADAM30 MUTATED" "ADAM30 WILD-TYPE" "ADAM30 WILD-TYPE" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"ADAM30 WILD-TYPE" "ADAM30 WILD-TYPE" "ADAM30 WILD-TYPE" "ADAM30 WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"ADAM30 WILD-TYPE" "ADAM30 WILD-TYPE" "ADAM30 WILD-TYPE" "ADAM30 WILD-TYPE" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
"ADAM30 WILD-TYPE" "ADAM30 WILD-TYPE" "ADAM30 WILD-TYPE" "ADAM30 WILD-TYPE" 
      TCGA-US-A77J 
"ADAM30 WILD-TYPE" 
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
"ADAM30 WILD-TYPE" "ADAM30 WILD-TYPE"   "ADAM30 MUTATED" "ADAM30 WILD-TYPE" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"ADAM30 WILD-TYPE"   "ADAM30 MUTATED" "ADAM30 WILD-TYPE" "ADAM30 WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
"ADAM30 WILD-TYPE" "ADAM30 WILD-TYPE" "ADAM30 WILD-TYPE" "ADAM30 WILD-TYPE" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"ADAM30 WILD-TYPE" "ADAM30 WILD-TYPE" "ADAM30 WILD-TYPE" "ADAM30 WILD-TYPE" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
"ADAM30 WILD-TYPE" "ADAM30 WILD-TYPE" "ADAM30 WILD-TYPE" "ADAM30 WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
  "ADAM30 MUTATED" "ADAM30 WILD-TYPE" "ADAM30 WILD-TYPE" "ADAM30 WILD-TYPE" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"ADAM30 WILD-TYPE" "ADAM30 WILD-TYPE" "ADAM30 WILD-TYPE" "ADAM30 WILD-TYPE" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
"ADAM30 WILD-TYPE" "ADAM30 WILD-TYPE" "ADAM30 WILD-TYPE" "ADAM30 WILD-TYPE" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
  "ADAM30 MUTATED" "ADAM30 WILD-TYPE" "ADAM30 WILD-TYPE" "ADAM30 WILD-TYPE" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
"ADAM30 WILD-TYPE"   "ADAM30 MUTATED" "ADAM30 WILD-TYPE" "ADAM30 WILD-TYPE" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
"ADAM30 WILD-TYPE" "ADAM30 WILD-TYPE" "ADAM30 WILD-TYPE" "ADAM30 WILD-TYPE" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
"ADAM30 WILD-TYPE" "ADAM30 WILD-TYPE" "ADAM30 WILD-TYPE" "ADAM30 WILD-TYPE" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
  "ADAM30 MUTATED" "ADAM30 WILD-TYPE" "ADAM30 WILD-TYPE" "ADAM30 WILD-TYPE" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
"ADAM30 WILD-TYPE"   "ADAM30 MUTATED" "ADAM30 WILD-TYPE" "ADAM30 WILD-TYPE" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"ADAM30 WILD-TYPE" "ADAM30 WILD-TYPE" "ADAM30 WILD-TYPE" "ADAM30 WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"ADAM30 WILD-TYPE" "ADAM30 WILD-TYPE" "ADAM30 WILD-TYPE" "ADAM30 WILD-TYPE" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
"ADAM30 WILD-TYPE" "ADAM30 WILD-TYPE" "ADAM30 WILD-TYPE" "ADAM30 WILD-TYPE" 
      TCGA-US-A77J 
"ADAM30 WILD-TYPE" 
[1] "hr=" "1.6"
D177V2, continuous
                  vv
clus               STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  ADAM30 MUTATED          0        0         2         4         0        1
  ADAM30 WILD-TYPE        1        4         9        47         2        2
D177V3, multiclass
                  vv
clus               T1+T2 T3+T4
  ADAM30 MUTATED       0     7
  ADAM30 WILD-TYPE     6    59
D177V4, multiclass
       clus
vv      ADAM30 MUTATED ADAM30 WILD-TYPE
  T1+T2              0                6
  T3+T4              7               59
D177V5, binary
                  cls
clus                0  1
  ADAM30 MUTATED    3  4
  ADAM30 WILD-TYPE 14 50
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ADAM30 MUTATED      3    4
  ADAM30 WILD-TYPE   14   50
   clus
vv  ADAM30 MUTATED ADAM30 WILD-TYPE
  0              3               14
  1              4               50
                  vv
clus               M0 M1 MX
  ADAM30 MUTATED    5  1  1
  ADAM30 WILD-TYPE 34  2 29
D177V6, multiclass
    clus
vv   ADAM30 MUTATED ADAM30 WILD-TYPE
  M0              5               34
  M1              1                2
  MX              1               29
D177V7, binary
                  cls
clus                0  1
  ADAM30 MUTATED    4  3
  ADAM30 WILD-TYPE 32 33
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ADAM30 MUTATED      4    3
  ADAM30 WILD-TYPE   32   33
        clus
vv       ADAM30 MUTATED ADAM30 WILD-TYPE
  FEMALE              4               32
  MALE                3               33
                  vv
clus               PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  ADAM30 MUTATED                                     6
  ADAM30 WILD-TYPE                                  59
                  vv
clus               PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  ADAM30 MUTATED                                       1
  ADAM30 WILD-TYPE                                     3
                  vv
clus               PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  ADAM30 MUTATED                                                  0
  ADAM30 WILD-TYPE                                                2
D177V8, multiclass
                                                  clus
vv                                                 ADAM30 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                           6
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                         1
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA              0
                                                  clus
vv                                                 ADAM30 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                            59
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                           3
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                2
D177V9, continuous
D177V10, continuous
                  vv
clus               R0 R1 RX
  ADAM30 MUTATED    3  4  0
  ADAM30 WILD-TYPE 39 20  2
D177V11, multiclass
    clus
vv   ADAM30 MUTATED ADAM30 WILD-TYPE
  R0              3               39
  R1              4               20
  RX              0                2
D177V12, continuous

Clustering(178) Variable = NR4A3 MUTATION ANALYSIS
D178V1, survival
                 sevent
clus2              0  1
  NR4A3 MUTATED    3  2
  NR4A3 WILD-TYPE 37 27
  NR4A3 MUTATED NR4A3 WILD-TYPE 
              5              64 
  NR4A3 MUTATED NR4A3 WILD-TYPE 
              2              27 
$`NR4A3 MUTATED`
TCGA-HZ-7925 TCGA-HZ-8001 TCGA-HZ-8636 TCGA-IB-7651 TCGA-IB-7889 
       11.87         0.62         0.16        19.82        15.81 

$`NR4A3 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P5 TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR 
        0.13        11.93        12.66         2.47         0.03         5.46 
TCGA-FZ-5920 TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 
        2.01        36.20        20.81        12.89         7.66        13.02 
TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 
        7.89         0.92         0.66         0.13         0.26        12.13 
TCGA-HZ-7926 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 
        0.26         0.79         0.69         3.95         0.92         0.53 
TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 
        2.99         0.76         0.95         6.38         1.51        11.41 
TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7652 TCGA-IB-7885 
       49.38         4.77        21.90        15.35        15.65        27.98 
TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-7893 
        4.04         3.62        43.79        19.66        16.04         3.85 
TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ 
       15.98         0.56        17.16        10.82         9.86         7.20 
TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W TCGA-PZ-A5RE 
       15.12         0.26         1.35         4.18         3.62         8.12 
TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
       13.68        16.80        14.14        18.67 

  NR4A3 MUTATED NR4A3 WILD-TYPE 
           0.16            0.03 
  NR4A3 MUTATED NR4A3 WILD-TYPE 
          19.82           49.38 
  NR4A3 MUTATED NR4A3 WILD-TYPE 
          11.87            7.43 
[1] "0.2 - 19.8 (11.9)" "0.0 - 49.4 (7.4)" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"NR4A3 WILD-TYPE" "NR4A3 WILD-TYPE" "NR4A3 WILD-TYPE" "NR4A3 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"NR4A3 WILD-TYPE" "NR4A3 WILD-TYPE" "NR4A3 WILD-TYPE" "NR4A3 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"NR4A3 WILD-TYPE" "NR4A3 WILD-TYPE" "NR4A3 WILD-TYPE" "NR4A3 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"NR4A3 WILD-TYPE" "NR4A3 WILD-TYPE" "NR4A3 WILD-TYPE" "NR4A3 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"NR4A3 WILD-TYPE" "NR4A3 WILD-TYPE" "NR4A3 WILD-TYPE" "NR4A3 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"NR4A3 WILD-TYPE" "NR4A3 WILD-TYPE" "NR4A3 WILD-TYPE" "NR4A3 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
  "NR4A3 MUTATED" "NR4A3 WILD-TYPE"   "NR4A3 MUTATED" "NR4A3 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"NR4A3 WILD-TYPE" "NR4A3 WILD-TYPE" "NR4A3 WILD-TYPE" "NR4A3 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
  "NR4A3 MUTATED" "NR4A3 WILD-TYPE" "NR4A3 WILD-TYPE" "NR4A3 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"NR4A3 WILD-TYPE" "NR4A3 WILD-TYPE" "NR4A3 WILD-TYPE" "NR4A3 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"NR4A3 WILD-TYPE" "NR4A3 WILD-TYPE" "NR4A3 WILD-TYPE"   "NR4A3 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"NR4A3 WILD-TYPE" "NR4A3 WILD-TYPE" "NR4A3 WILD-TYPE" "NR4A3 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"NR4A3 WILD-TYPE"   "NR4A3 MUTATED" "NR4A3 WILD-TYPE" "NR4A3 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"NR4A3 WILD-TYPE" "NR4A3 WILD-TYPE" "NR4A3 WILD-TYPE" "NR4A3 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"NR4A3 WILD-TYPE" "NR4A3 WILD-TYPE" "NR4A3 WILD-TYPE" "NR4A3 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"NR4A3 WILD-TYPE" "NR4A3 WILD-TYPE" "NR4A3 WILD-TYPE" "NR4A3 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"NR4A3 WILD-TYPE" "NR4A3 WILD-TYPE" "NR4A3 WILD-TYPE" "NR4A3 WILD-TYPE" 
     TCGA-US-A77J 
"NR4A3 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"NR4A3 WILD-TYPE" "NR4A3 WILD-TYPE" "NR4A3 WILD-TYPE" "NR4A3 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"NR4A3 WILD-TYPE" "NR4A3 WILD-TYPE" "NR4A3 WILD-TYPE" "NR4A3 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"NR4A3 WILD-TYPE" "NR4A3 WILD-TYPE" "NR4A3 WILD-TYPE" "NR4A3 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"NR4A3 WILD-TYPE" "NR4A3 WILD-TYPE" "NR4A3 WILD-TYPE" "NR4A3 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"NR4A3 WILD-TYPE" "NR4A3 WILD-TYPE" "NR4A3 WILD-TYPE" "NR4A3 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"NR4A3 WILD-TYPE" "NR4A3 WILD-TYPE" "NR4A3 WILD-TYPE" "NR4A3 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
  "NR4A3 MUTATED" "NR4A3 WILD-TYPE"   "NR4A3 MUTATED" "NR4A3 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"NR4A3 WILD-TYPE" "NR4A3 WILD-TYPE" "NR4A3 WILD-TYPE" "NR4A3 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
  "NR4A3 MUTATED" "NR4A3 WILD-TYPE" "NR4A3 WILD-TYPE" "NR4A3 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"NR4A3 WILD-TYPE" "NR4A3 WILD-TYPE" "NR4A3 WILD-TYPE" "NR4A3 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"NR4A3 WILD-TYPE" "NR4A3 WILD-TYPE" "NR4A3 WILD-TYPE"   "NR4A3 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"NR4A3 WILD-TYPE" "NR4A3 WILD-TYPE" "NR4A3 WILD-TYPE" "NR4A3 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"NR4A3 WILD-TYPE"   "NR4A3 MUTATED" "NR4A3 WILD-TYPE" "NR4A3 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"NR4A3 WILD-TYPE" "NR4A3 WILD-TYPE" "NR4A3 WILD-TYPE" "NR4A3 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"NR4A3 WILD-TYPE" "NR4A3 WILD-TYPE" "NR4A3 WILD-TYPE" "NR4A3 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"NR4A3 WILD-TYPE" "NR4A3 WILD-TYPE" "NR4A3 WILD-TYPE" "NR4A3 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"NR4A3 WILD-TYPE" "NR4A3 WILD-TYPE" "NR4A3 WILD-TYPE" "NR4A3 WILD-TYPE" 
     TCGA-US-A77J 
"NR4A3 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"NR4A3 WILD-TYPE" "NR4A3 WILD-TYPE" "NR4A3 WILD-TYPE" "NR4A3 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"NR4A3 WILD-TYPE" "NR4A3 WILD-TYPE" "NR4A3 WILD-TYPE" "NR4A3 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"NR4A3 WILD-TYPE" "NR4A3 WILD-TYPE" "NR4A3 WILD-TYPE" "NR4A3 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"NR4A3 WILD-TYPE" "NR4A3 WILD-TYPE" "NR4A3 WILD-TYPE" "NR4A3 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"NR4A3 WILD-TYPE" "NR4A3 WILD-TYPE" "NR4A3 WILD-TYPE" "NR4A3 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"NR4A3 WILD-TYPE" "NR4A3 WILD-TYPE" "NR4A3 WILD-TYPE" "NR4A3 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
  "NR4A3 MUTATED" "NR4A3 WILD-TYPE"   "NR4A3 MUTATED" "NR4A3 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"NR4A3 WILD-TYPE" "NR4A3 WILD-TYPE" "NR4A3 WILD-TYPE" "NR4A3 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
  "NR4A3 MUTATED" "NR4A3 WILD-TYPE" "NR4A3 WILD-TYPE" "NR4A3 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"NR4A3 WILD-TYPE" "NR4A3 WILD-TYPE" "NR4A3 WILD-TYPE" "NR4A3 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"NR4A3 WILD-TYPE" "NR4A3 WILD-TYPE" "NR4A3 WILD-TYPE"   "NR4A3 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"NR4A3 WILD-TYPE" "NR4A3 WILD-TYPE" "NR4A3 WILD-TYPE" "NR4A3 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"NR4A3 WILD-TYPE"   "NR4A3 MUTATED" "NR4A3 WILD-TYPE" "NR4A3 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"NR4A3 WILD-TYPE" "NR4A3 WILD-TYPE" "NR4A3 WILD-TYPE" "NR4A3 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"NR4A3 WILD-TYPE" "NR4A3 WILD-TYPE" "NR4A3 WILD-TYPE" "NR4A3 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"NR4A3 WILD-TYPE" "NR4A3 WILD-TYPE" "NR4A3 WILD-TYPE" "NR4A3 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"NR4A3 WILD-TYPE" "NR4A3 WILD-TYPE" "NR4A3 WILD-TYPE" "NR4A3 WILD-TYPE" 
     TCGA-US-A77J 
"NR4A3 WILD-TYPE" 
[1] "hr=" "1.1"
D178V2, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  NR4A3 MUTATED          0        0         0         3         1        1
  NR4A3 WILD-TYPE        1        4        11        48         1        2
D178V3, multiclass
                 vv
clus              T1+T2 T3+T4
  NR4A3 MUTATED       0     5
  NR4A3 WILD-TYPE     6    61
D178V4, multiclass
       clus
vv      NR4A3 MUTATED NR4A3 WILD-TYPE
  T1+T2             0               6
  T3+T4             5              61
D178V5, binary
                 cls
clus               0  1
  NR4A3 MUTATED    2  3
  NR4A3 WILD-TYPE 15 51
[1] "tbl2"
                 cls
clus              [,1] [,2]
  NR4A3 MUTATED      2    3
  NR4A3 WILD-TYPE   15   51
   clus
vv  NR4A3 MUTATED NR4A3 WILD-TYPE
  0             2              15
  1             3              51
                 vv
clus              M0 M1 MX
  NR4A3 MUTATED    2  1  2
  NR4A3 WILD-TYPE 37  2 28
D178V6, multiclass
    clus
vv   NR4A3 MUTATED NR4A3 WILD-TYPE
  M0             2              37
  M1             1               2
  MX             2              28
D178V7, binary
                 cls
clus               0  1
  NR4A3 MUTATED    3  2
  NR4A3 WILD-TYPE 33 34
[1] "tbl2"
                 cls
clus              [,1] [,2]
  NR4A3 MUTATED      3    2
  NR4A3 WILD-TYPE   33   34
        clus
vv       NR4A3 MUTATED NR4A3 WILD-TYPE
  FEMALE             3              33
  MALE               2              34
                 vv
clus              PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  NR4A3 MUTATED                                     5
  NR4A3 WILD-TYPE                                  60
                 vv
clus              PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  NR4A3 MUTATED                                       0
  NR4A3 WILD-TYPE                                     4
                 vv
clus              PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  NR4A3 MUTATED                                                  0
  NR4A3 WILD-TYPE                                                2
D178V8, multiclass
                                                  clus
vv                                                 NR4A3 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                          5
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                        0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA             0
                                                  clus
vv                                                 NR4A3 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                           60
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                          4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA               2
D178V9, continuous
[1] "Remove cluster labels:" "NR4A3 MUTATED"         
clus
  NR4A3 MUTATED NR4A3 WILD-TYPE 
              1              21 
     TCGA-F2-6880      TCGA-FB-A4P5      TCGA-FB-A4P6      TCGA-FB-A5VM 
"NR4A3 WILD-TYPE" "NR4A3 WILD-TYPE" "NR4A3 WILD-TYPE" "NR4A3 WILD-TYPE" 
     TCGA-FB-A78T      TCGA-FB-A7DR      TCGA-H6-8124      TCGA-H6-A45N 
"NR4A3 WILD-TYPE" "NR4A3 WILD-TYPE" "NR4A3 WILD-TYPE" "NR4A3 WILD-TYPE" 
     TCGA-H8-A6C1      TCGA-IB-7644      TCGA-IB-7649      TCGA-IB-7885 
"NR4A3 WILD-TYPE" "NR4A3 WILD-TYPE" "NR4A3 WILD-TYPE" "NR4A3 WILD-TYPE" 
     TCGA-IB-7886      TCGA-IB-7887      TCGA-IB-7891      TCGA-IB-8126 
"NR4A3 WILD-TYPE" "NR4A3 WILD-TYPE" "NR4A3 WILD-TYPE" "NR4A3 WILD-TYPE" 
     TCGA-IB-8127      TCGA-IB-A5SS      TCGA-IB-A6UG      TCGA-LB-A7SX 
"NR4A3 WILD-TYPE" "NR4A3 WILD-TYPE" "NR4A3 WILD-TYPE" "NR4A3 WILD-TYPE" 
     TCGA-OE-A75W 
"NR4A3 WILD-TYPE" 
D178V10, continuous
[1] "Remove cluster labels:" "NR4A3 MUTATED"         
clus
  NR4A3 MUTATED NR4A3 WILD-TYPE 
              1              18 
     TCGA-FB-A4P5      TCGA-FB-A4P6      TCGA-FB-A5VM      TCGA-FB-A78T 
"NR4A3 WILD-TYPE" "NR4A3 WILD-TYPE" "NR4A3 WILD-TYPE" "NR4A3 WILD-TYPE" 
     TCGA-FB-A7DR      TCGA-H6-8124      TCGA-H8-A6C1      TCGA-IB-7644 
"NR4A3 WILD-TYPE" "NR4A3 WILD-TYPE" "NR4A3 WILD-TYPE" "NR4A3 WILD-TYPE" 
     TCGA-IB-7649      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7891 
"NR4A3 WILD-TYPE" "NR4A3 WILD-TYPE" "NR4A3 WILD-TYPE" "NR4A3 WILD-TYPE" 
     TCGA-IB-8126      TCGA-IB-8127      TCGA-IB-A5SS      TCGA-IB-A6UG 
"NR4A3 WILD-TYPE" "NR4A3 WILD-TYPE" "NR4A3 WILD-TYPE" "NR4A3 WILD-TYPE" 
     TCGA-LB-A7SX      TCGA-OE-A75W 
"NR4A3 WILD-TYPE" "NR4A3 WILD-TYPE" 
                 vv
clus              R0 R1 RX
  NR4A3 MUTATED    4  1  0
  NR4A3 WILD-TYPE 38 23  2
D178V11, multiclass
    clus
vv   NR4A3 MUTATED NR4A3 WILD-TYPE
  R0             4              38
  R1             1              23
  RX             0               2
D178V12, continuous

Clustering(179) Variable = MAMSTR MUTATION ANALYSIS
D179V1, survival
                  sevent
clus2               0  1
  MAMSTR MUTATED    1  2
  MAMSTR WILD-TYPE 39 27
  MAMSTR MUTATED MAMSTR WILD-TYPE 
               3               66 
  MAMSTR MUTATED MAMSTR WILD-TYPE 
               2               27 
$`MAMSTR MUTATED`
TCGA-HZ-A49H TCGA-IB-7889 TCGA-IB-7893 
        0.95        15.81         3.85 

$`MAMSTR WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P5 TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR 
        0.13        11.93        12.66         2.47         0.03         5.46 
TCGA-FZ-5920 TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 
        2.01        36.20        20.81        12.89         7.66        13.02 
TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 
        7.89         0.92         0.66         0.13         0.26        12.13 
TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 
       11.87         0.26         0.62         0.79         0.69         3.95 
TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A4BH 
        0.92         0.53         0.16         2.99         0.76         6.38 
TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 
        1.51        11.41        49.38         4.77        21.90        15.35 
TCGA-IB-7651 TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7888 
       19.82        15.65        27.98         4.04         3.62        43.79 
TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO 
       19.66        16.04        15.98         0.56        17.16        10.82 
TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX 
        9.86         7.20        15.12         0.26         1.35         4.18 
TCGA-OE-A75W TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
        3.62         8.12        13.68        16.80        14.14        18.67 

  MAMSTR MUTATED MAMSTR WILD-TYPE 
            0.95             0.03 
  MAMSTR MUTATED MAMSTR WILD-TYPE 
           15.81            49.38 
  MAMSTR MUTATED MAMSTR WILD-TYPE 
           3.850            7.775 
[1] "0.9 - 15.8 (3.9)" "0.0 - 49.4 (7.8)"
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
"MAMSTR WILD-TYPE" "MAMSTR WILD-TYPE" "MAMSTR WILD-TYPE" "MAMSTR WILD-TYPE" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"MAMSTR WILD-TYPE" "MAMSTR WILD-TYPE" "MAMSTR WILD-TYPE" "MAMSTR WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
"MAMSTR WILD-TYPE" "MAMSTR WILD-TYPE" "MAMSTR WILD-TYPE" "MAMSTR WILD-TYPE" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"MAMSTR WILD-TYPE" "MAMSTR WILD-TYPE" "MAMSTR WILD-TYPE" "MAMSTR WILD-TYPE" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
"MAMSTR WILD-TYPE" "MAMSTR WILD-TYPE" "MAMSTR WILD-TYPE" "MAMSTR WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
"MAMSTR WILD-TYPE" "MAMSTR WILD-TYPE" "MAMSTR WILD-TYPE" "MAMSTR WILD-TYPE" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"MAMSTR WILD-TYPE" "MAMSTR WILD-TYPE" "MAMSTR WILD-TYPE" "MAMSTR WILD-TYPE" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
"MAMSTR WILD-TYPE" "MAMSTR WILD-TYPE" "MAMSTR WILD-TYPE" "MAMSTR WILD-TYPE" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
"MAMSTR WILD-TYPE" "MAMSTR WILD-TYPE" "MAMSTR WILD-TYPE"   "MAMSTR MUTATED" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
"MAMSTR WILD-TYPE" "MAMSTR WILD-TYPE" "MAMSTR WILD-TYPE" "MAMSTR WILD-TYPE" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
"MAMSTR WILD-TYPE" "MAMSTR WILD-TYPE" "MAMSTR WILD-TYPE" "MAMSTR WILD-TYPE" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
"MAMSTR WILD-TYPE" "MAMSTR WILD-TYPE" "MAMSTR WILD-TYPE" "MAMSTR WILD-TYPE" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
"MAMSTR WILD-TYPE"   "MAMSTR MUTATED" "MAMSTR WILD-TYPE" "MAMSTR WILD-TYPE" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
  "MAMSTR MUTATED" "MAMSTR WILD-TYPE" "MAMSTR WILD-TYPE" "MAMSTR WILD-TYPE" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"MAMSTR WILD-TYPE" "MAMSTR WILD-TYPE" "MAMSTR WILD-TYPE" "MAMSTR WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"MAMSTR WILD-TYPE" "MAMSTR WILD-TYPE" "MAMSTR WILD-TYPE" "MAMSTR WILD-TYPE" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
"MAMSTR WILD-TYPE" "MAMSTR WILD-TYPE" "MAMSTR WILD-TYPE" "MAMSTR WILD-TYPE" 
      TCGA-US-A77J 
"MAMSTR WILD-TYPE" 
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
"MAMSTR WILD-TYPE" "MAMSTR WILD-TYPE" "MAMSTR WILD-TYPE" "MAMSTR WILD-TYPE" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"MAMSTR WILD-TYPE" "MAMSTR WILD-TYPE" "MAMSTR WILD-TYPE" "MAMSTR WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
"MAMSTR WILD-TYPE" "MAMSTR WILD-TYPE" "MAMSTR WILD-TYPE" "MAMSTR WILD-TYPE" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"MAMSTR WILD-TYPE" "MAMSTR WILD-TYPE" "MAMSTR WILD-TYPE" "MAMSTR WILD-TYPE" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
"MAMSTR WILD-TYPE" "MAMSTR WILD-TYPE" "MAMSTR WILD-TYPE" "MAMSTR WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
"MAMSTR WILD-TYPE" "MAMSTR WILD-TYPE" "MAMSTR WILD-TYPE" "MAMSTR WILD-TYPE" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"MAMSTR WILD-TYPE" "MAMSTR WILD-TYPE" "MAMSTR WILD-TYPE" "MAMSTR WILD-TYPE" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
"MAMSTR WILD-TYPE" "MAMSTR WILD-TYPE" "MAMSTR WILD-TYPE" "MAMSTR WILD-TYPE" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
"MAMSTR WILD-TYPE" "MAMSTR WILD-TYPE" "MAMSTR WILD-TYPE"   "MAMSTR MUTATED" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
"MAMSTR WILD-TYPE" "MAMSTR WILD-TYPE" "MAMSTR WILD-TYPE" "MAMSTR WILD-TYPE" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
"MAMSTR WILD-TYPE" "MAMSTR WILD-TYPE" "MAMSTR WILD-TYPE" "MAMSTR WILD-TYPE" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
"MAMSTR WILD-TYPE" "MAMSTR WILD-TYPE" "MAMSTR WILD-TYPE" "MAMSTR WILD-TYPE" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
"MAMSTR WILD-TYPE"   "MAMSTR MUTATED" "MAMSTR WILD-TYPE" "MAMSTR WILD-TYPE" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
  "MAMSTR MUTATED" "MAMSTR WILD-TYPE" "MAMSTR WILD-TYPE" "MAMSTR WILD-TYPE" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"MAMSTR WILD-TYPE" "MAMSTR WILD-TYPE" "MAMSTR WILD-TYPE" "MAMSTR WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"MAMSTR WILD-TYPE" "MAMSTR WILD-TYPE" "MAMSTR WILD-TYPE" "MAMSTR WILD-TYPE" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
"MAMSTR WILD-TYPE" "MAMSTR WILD-TYPE" "MAMSTR WILD-TYPE" "MAMSTR WILD-TYPE" 
      TCGA-US-A77J 
"MAMSTR WILD-TYPE" 
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
"MAMSTR WILD-TYPE" "MAMSTR WILD-TYPE" "MAMSTR WILD-TYPE" "MAMSTR WILD-TYPE" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"MAMSTR WILD-TYPE" "MAMSTR WILD-TYPE" "MAMSTR WILD-TYPE" "MAMSTR WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
"MAMSTR WILD-TYPE" "MAMSTR WILD-TYPE" "MAMSTR WILD-TYPE" "MAMSTR WILD-TYPE" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"MAMSTR WILD-TYPE" "MAMSTR WILD-TYPE" "MAMSTR WILD-TYPE" "MAMSTR WILD-TYPE" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
"MAMSTR WILD-TYPE" "MAMSTR WILD-TYPE" "MAMSTR WILD-TYPE" "MAMSTR WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
"MAMSTR WILD-TYPE" "MAMSTR WILD-TYPE" "MAMSTR WILD-TYPE" "MAMSTR WILD-TYPE" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"MAMSTR WILD-TYPE" "MAMSTR WILD-TYPE" "MAMSTR WILD-TYPE" "MAMSTR WILD-TYPE" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
"MAMSTR WILD-TYPE" "MAMSTR WILD-TYPE" "MAMSTR WILD-TYPE" "MAMSTR WILD-TYPE" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
"MAMSTR WILD-TYPE" "MAMSTR WILD-TYPE" "MAMSTR WILD-TYPE"   "MAMSTR MUTATED" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
"MAMSTR WILD-TYPE" "MAMSTR WILD-TYPE" "MAMSTR WILD-TYPE" "MAMSTR WILD-TYPE" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
"MAMSTR WILD-TYPE" "MAMSTR WILD-TYPE" "MAMSTR WILD-TYPE" "MAMSTR WILD-TYPE" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
"MAMSTR WILD-TYPE" "MAMSTR WILD-TYPE" "MAMSTR WILD-TYPE" "MAMSTR WILD-TYPE" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
"MAMSTR WILD-TYPE"   "MAMSTR MUTATED" "MAMSTR WILD-TYPE" "MAMSTR WILD-TYPE" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
  "MAMSTR MUTATED" "MAMSTR WILD-TYPE" "MAMSTR WILD-TYPE" "MAMSTR WILD-TYPE" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"MAMSTR WILD-TYPE" "MAMSTR WILD-TYPE" "MAMSTR WILD-TYPE" "MAMSTR WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"MAMSTR WILD-TYPE" "MAMSTR WILD-TYPE" "MAMSTR WILD-TYPE" "MAMSTR WILD-TYPE" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
"MAMSTR WILD-TYPE" "MAMSTR WILD-TYPE" "MAMSTR WILD-TYPE" "MAMSTR WILD-TYPE" 
      TCGA-US-A77J 
"MAMSTR WILD-TYPE" 
[1] "hr=" "3"  
D179V2, continuous
                  vv
clus               STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  MAMSTR MUTATED          0        0         1         2         0        0
  MAMSTR WILD-TYPE        1        4        10        49         2        3
D179V3, multiclass
                  vv
clus               T1+T2 T3+T4
  MAMSTR MUTATED       0     3
  MAMSTR WILD-TYPE     6    63
D179V4, multiclass
       clus
vv      MAMSTR MUTATED MAMSTR WILD-TYPE
  T1+T2              0                6
  T3+T4              3               63
D179V5, binary
                  cls
clus                0  1
  MAMSTR MUTATED    1  2
  MAMSTR WILD-TYPE 16 52
[1] "tbl2"
                  cls
clus               [,1] [,2]
  MAMSTR MUTATED      1    2
  MAMSTR WILD-TYPE   16   52
   clus
vv  MAMSTR MUTATED MAMSTR WILD-TYPE
  0              1               16
  1              2               52
                  vv
clus               M0 M1 MX
  MAMSTR MUTATED    2  0  1
  MAMSTR WILD-TYPE 37  3 29
D179V6, multiclass
    clus
vv   MAMSTR MUTATED MAMSTR WILD-TYPE
  M0              2               37
  M1              0                3
  MX              1               29
D179V7, binary
                  cls
clus                0  1
  MAMSTR MUTATED    2  1
  MAMSTR WILD-TYPE 34 35
[1] "tbl2"
                  cls
clus               [,1] [,2]
  MAMSTR MUTATED      2    1
  MAMSTR WILD-TYPE   34   35
        clus
vv       MAMSTR MUTATED MAMSTR WILD-TYPE
  FEMALE              2               34
  MALE                1               35
                  vv
clus               PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  MAMSTR MUTATED                                     3
  MAMSTR WILD-TYPE                                  62
                  vv
clus               PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  MAMSTR MUTATED                                       0
  MAMSTR WILD-TYPE                                     4
                  vv
clus               PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  MAMSTR MUTATED                                                  0
  MAMSTR WILD-TYPE                                                2
D179V8, multiclass
                                                  clus
vv                                                 MAMSTR MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                           3
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                         0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA              0
                                                  clus
vv                                                 MAMSTR WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                            62
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                           4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                2
D179V9, continuous
D179V10, continuous
                  vv
clus               R0 R1 RX
  MAMSTR MUTATED    3  0  0
  MAMSTR WILD-TYPE 39 24  2
D179V11, multiclass
    clus
vv   MAMSTR MUTATED MAMSTR WILD-TYPE
  R0              3               39
  R1              0               24
  RX              0                2
D179V12, continuous

Clustering(180) Variable = ZC3H7B MUTATION ANALYSIS
D180V1, survival
                  sevent
clus2               0  1
  ZC3H7B MUTATED    4  4
  ZC3H7B WILD-TYPE 36 25
  ZC3H7B MUTATED ZC3H7B WILD-TYPE 
               8               61 
  ZC3H7B MUTATED ZC3H7B WILD-TYPE 
               4               25 
$`ZC3H7B MUTATED`
TCGA-H6-8124 TCGA-H6-A45N TCGA-HZ-8317 TCGA-IB-7645 TCGA-IB-7649 TCGA-IB-7651 
       12.89         7.66         0.53        49.38        15.35        19.82 
TCGA-IB-7885 TCGA-IB-A5ST 
       27.98         0.26 

$`ZC3H7B WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P5 TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR 
        0.13        11.93        12.66         2.47         0.03         5.46 
TCGA-FZ-5920 TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H8-A6C1 TCGA-HZ-7289 TCGA-HZ-7918 
        2.01        36.20        20.81        13.02         7.89         0.92 
TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 
        0.66         0.13         0.26        12.13        11.87         0.26 
TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8636 
        0.62         0.79         0.69         3.95         0.92         0.16 
TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 
        2.99         0.76         0.95         6.38         1.51        11.41 
TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7652 TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7888 
        4.77        21.90        15.65         4.04         3.62        43.79 
TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-8126 
       15.81        19.66        16.04         3.85        15.98         0.56 
TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A6UG 
       17.16        10.82         9.86         7.20        15.12         1.35 
TCGA-LB-A7SX TCGA-OE-A75W TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E 
        4.18         3.62         8.12        13.68        16.80        14.14 
TCGA-US-A77J 
       18.67 

  ZC3H7B MUTATED ZC3H7B WILD-TYPE 
            0.26             0.03 
  ZC3H7B MUTATED ZC3H7B WILD-TYPE 
           49.38            43.79 
  ZC3H7B MUTATED ZC3H7B WILD-TYPE 
           14.12             7.10 
[1] "0.3 - 49.4 (14.1)" "0.0 - 43.8 (7.1)" 
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
"ZC3H7B WILD-TYPE" "ZC3H7B WILD-TYPE" "ZC3H7B WILD-TYPE" "ZC3H7B WILD-TYPE" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"ZC3H7B WILD-TYPE" "ZC3H7B WILD-TYPE" "ZC3H7B WILD-TYPE" "ZC3H7B WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
"ZC3H7B WILD-TYPE" "ZC3H7B WILD-TYPE" "ZC3H7B WILD-TYPE" "ZC3H7B WILD-TYPE" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"ZC3H7B WILD-TYPE" "ZC3H7B WILD-TYPE" "ZC3H7B WILD-TYPE"   "ZC3H7B MUTATED" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
  "ZC3H7B MUTATED" "ZC3H7B WILD-TYPE" "ZC3H7B WILD-TYPE" "ZC3H7B WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
"ZC3H7B WILD-TYPE" "ZC3H7B WILD-TYPE" "ZC3H7B WILD-TYPE" "ZC3H7B WILD-TYPE" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"ZC3H7B WILD-TYPE" "ZC3H7B WILD-TYPE" "ZC3H7B WILD-TYPE" "ZC3H7B WILD-TYPE" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
"ZC3H7B WILD-TYPE" "ZC3H7B WILD-TYPE" "ZC3H7B WILD-TYPE"   "ZC3H7B MUTATED" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
"ZC3H7B WILD-TYPE" "ZC3H7B WILD-TYPE" "ZC3H7B WILD-TYPE" "ZC3H7B WILD-TYPE" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
"ZC3H7B WILD-TYPE" "ZC3H7B WILD-TYPE" "ZC3H7B WILD-TYPE"   "ZC3H7B MUTATED" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
"ZC3H7B WILD-TYPE" "ZC3H7B WILD-TYPE"   "ZC3H7B MUTATED"   "ZC3H7B MUTATED" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
"ZC3H7B WILD-TYPE"   "ZC3H7B MUTATED" "ZC3H7B WILD-TYPE" "ZC3H7B WILD-TYPE" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
"ZC3H7B WILD-TYPE" "ZC3H7B WILD-TYPE" "ZC3H7B WILD-TYPE" "ZC3H7B WILD-TYPE" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
"ZC3H7B WILD-TYPE" "ZC3H7B WILD-TYPE" "ZC3H7B WILD-TYPE" "ZC3H7B WILD-TYPE" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"ZC3H7B WILD-TYPE" "ZC3H7B WILD-TYPE" "ZC3H7B WILD-TYPE" "ZC3H7B WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
  "ZC3H7B MUTATED" "ZC3H7B WILD-TYPE" "ZC3H7B WILD-TYPE" "ZC3H7B WILD-TYPE" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
"ZC3H7B WILD-TYPE" "ZC3H7B WILD-TYPE" "ZC3H7B WILD-TYPE" "ZC3H7B WILD-TYPE" 
      TCGA-US-A77J 
"ZC3H7B WILD-TYPE" 
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
"ZC3H7B WILD-TYPE" "ZC3H7B WILD-TYPE" "ZC3H7B WILD-TYPE" "ZC3H7B WILD-TYPE" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"ZC3H7B WILD-TYPE" "ZC3H7B WILD-TYPE" "ZC3H7B WILD-TYPE" "ZC3H7B WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
"ZC3H7B WILD-TYPE" "ZC3H7B WILD-TYPE" "ZC3H7B WILD-TYPE" "ZC3H7B WILD-TYPE" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"ZC3H7B WILD-TYPE" "ZC3H7B WILD-TYPE" "ZC3H7B WILD-TYPE"   "ZC3H7B MUTATED" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
  "ZC3H7B MUTATED" "ZC3H7B WILD-TYPE" "ZC3H7B WILD-TYPE" "ZC3H7B WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
"ZC3H7B WILD-TYPE" "ZC3H7B WILD-TYPE" "ZC3H7B WILD-TYPE" "ZC3H7B WILD-TYPE" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"ZC3H7B WILD-TYPE" "ZC3H7B WILD-TYPE" "ZC3H7B WILD-TYPE" "ZC3H7B WILD-TYPE" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
"ZC3H7B WILD-TYPE" "ZC3H7B WILD-TYPE" "ZC3H7B WILD-TYPE"   "ZC3H7B MUTATED" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
"ZC3H7B WILD-TYPE" "ZC3H7B WILD-TYPE" "ZC3H7B WILD-TYPE" "ZC3H7B WILD-TYPE" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
"ZC3H7B WILD-TYPE" "ZC3H7B WILD-TYPE" "ZC3H7B WILD-TYPE"   "ZC3H7B MUTATED" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
"ZC3H7B WILD-TYPE" "ZC3H7B WILD-TYPE"   "ZC3H7B MUTATED"   "ZC3H7B MUTATED" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
"ZC3H7B WILD-TYPE"   "ZC3H7B MUTATED" "ZC3H7B WILD-TYPE" "ZC3H7B WILD-TYPE" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
"ZC3H7B WILD-TYPE" "ZC3H7B WILD-TYPE" "ZC3H7B WILD-TYPE" "ZC3H7B WILD-TYPE" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
"ZC3H7B WILD-TYPE" "ZC3H7B WILD-TYPE" "ZC3H7B WILD-TYPE" "ZC3H7B WILD-TYPE" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"ZC3H7B WILD-TYPE" "ZC3H7B WILD-TYPE" "ZC3H7B WILD-TYPE" "ZC3H7B WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
  "ZC3H7B MUTATED" "ZC3H7B WILD-TYPE" "ZC3H7B WILD-TYPE" "ZC3H7B WILD-TYPE" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
"ZC3H7B WILD-TYPE" "ZC3H7B WILD-TYPE" "ZC3H7B WILD-TYPE" "ZC3H7B WILD-TYPE" 
      TCGA-US-A77J 
"ZC3H7B WILD-TYPE" 
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
"ZC3H7B WILD-TYPE" "ZC3H7B WILD-TYPE" "ZC3H7B WILD-TYPE" "ZC3H7B WILD-TYPE" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"ZC3H7B WILD-TYPE" "ZC3H7B WILD-TYPE" "ZC3H7B WILD-TYPE" "ZC3H7B WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
"ZC3H7B WILD-TYPE" "ZC3H7B WILD-TYPE" "ZC3H7B WILD-TYPE" "ZC3H7B WILD-TYPE" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"ZC3H7B WILD-TYPE" "ZC3H7B WILD-TYPE" "ZC3H7B WILD-TYPE"   "ZC3H7B MUTATED" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
  "ZC3H7B MUTATED" "ZC3H7B WILD-TYPE" "ZC3H7B WILD-TYPE" "ZC3H7B WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
"ZC3H7B WILD-TYPE" "ZC3H7B WILD-TYPE" "ZC3H7B WILD-TYPE" "ZC3H7B WILD-TYPE" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"ZC3H7B WILD-TYPE" "ZC3H7B WILD-TYPE" "ZC3H7B WILD-TYPE" "ZC3H7B WILD-TYPE" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
"ZC3H7B WILD-TYPE" "ZC3H7B WILD-TYPE" "ZC3H7B WILD-TYPE"   "ZC3H7B MUTATED" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
"ZC3H7B WILD-TYPE" "ZC3H7B WILD-TYPE" "ZC3H7B WILD-TYPE" "ZC3H7B WILD-TYPE" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
"ZC3H7B WILD-TYPE" "ZC3H7B WILD-TYPE" "ZC3H7B WILD-TYPE"   "ZC3H7B MUTATED" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
"ZC3H7B WILD-TYPE" "ZC3H7B WILD-TYPE"   "ZC3H7B MUTATED"   "ZC3H7B MUTATED" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
"ZC3H7B WILD-TYPE"   "ZC3H7B MUTATED" "ZC3H7B WILD-TYPE" "ZC3H7B WILD-TYPE" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
"ZC3H7B WILD-TYPE" "ZC3H7B WILD-TYPE" "ZC3H7B WILD-TYPE" "ZC3H7B WILD-TYPE" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
"ZC3H7B WILD-TYPE" "ZC3H7B WILD-TYPE" "ZC3H7B WILD-TYPE" "ZC3H7B WILD-TYPE" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"ZC3H7B WILD-TYPE" "ZC3H7B WILD-TYPE" "ZC3H7B WILD-TYPE" "ZC3H7B WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
  "ZC3H7B MUTATED" "ZC3H7B WILD-TYPE" "ZC3H7B WILD-TYPE" "ZC3H7B WILD-TYPE" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
"ZC3H7B WILD-TYPE" "ZC3H7B WILD-TYPE" "ZC3H7B WILD-TYPE" "ZC3H7B WILD-TYPE" 
      TCGA-US-A77J 
"ZC3H7B WILD-TYPE" 
[1] "hr=" "2.5"
D180V2, continuous
                  vv
clus               STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  ZC3H7B MUTATED          0        0         0         8         0        0
  ZC3H7B WILD-TYPE        1        4        11        43         2        3
D180V3, multiclass
                  vv
clus               T1+T2 T3+T4
  ZC3H7B MUTATED       0     8
  ZC3H7B WILD-TYPE     6    58
D180V4, multiclass
       clus
vv      ZC3H7B MUTATED ZC3H7B WILD-TYPE
  T1+T2              0                6
  T3+T4              8               58
D180V5, binary
                  cls
clus                0  1
  ZC3H7B MUTATED    0  8
  ZC3H7B WILD-TYPE 17 46
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ZC3H7B MUTATED      0    8
  ZC3H7B WILD-TYPE   17   46
   clus
vv  ZC3H7B MUTATED ZC3H7B WILD-TYPE
  0              0               17
  1              8               46
                  vv
clus               M0 M1 MX
  ZC3H7B MUTATED    6  0  2
  ZC3H7B WILD-TYPE 33  3 28
D180V6, multiclass
    clus
vv   ZC3H7B MUTATED ZC3H7B WILD-TYPE
  M0              6               33
  M1              0                3
  MX              2               28
D180V7, binary
                  cls
clus                0  1
  ZC3H7B MUTATED    8  0
  ZC3H7B WILD-TYPE 28 36
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ZC3H7B MUTATED      8    0
  ZC3H7B WILD-TYPE   28   36
        clus
vv       ZC3H7B MUTATED ZC3H7B WILD-TYPE
  FEMALE              8               28
  MALE                0               36
                  vv
clus               PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  ZC3H7B MUTATED                                     7
  ZC3H7B WILD-TYPE                                  58
                  vv
clus               PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  ZC3H7B MUTATED                                       1
  ZC3H7B WILD-TYPE                                     3
                  vv
clus               PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  ZC3H7B MUTATED                                                  0
  ZC3H7B WILD-TYPE                                                2
D180V8, multiclass
                                                  clus
vv                                                 ZC3H7B MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                           7
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                         1
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA              0
                                                  clus
vv                                                 ZC3H7B WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                            58
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                           3
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                2
D180V9, continuous
D180V10, continuous
                  vv
clus               R0 R1 RX
  ZC3H7B MUTATED    5  2  0
  ZC3H7B WILD-TYPE 37 22  2
D180V11, multiclass
    clus
vv   ZC3H7B MUTATED ZC3H7B WILD-TYPE
  R0              5               37
  R1              2               22
  RX              0                2
D180V12, continuous

Clustering(181) Variable = IFFO1 MUTATION ANALYSIS
D181V1, survival
                 sevent
clus2              0  1
  IFFO1 MUTATED    4  3
  IFFO1 WILD-TYPE 36 26
  IFFO1 MUTATED IFFO1 WILD-TYPE 
              7              62 
  IFFO1 MUTATED IFFO1 WILD-TYPE 
              3              26 
$`IFFO1 MUTATED`
TCGA-H8-A6C1 TCGA-HZ-7289 TCGA-HZ-7919 TCGA-HZ-8001 TCGA-HZ-8005 TCGA-IB-7651 
       13.02         7.89         0.66         0.62         3.95        19.82 
TCGA-IB-7888 
       43.79 

$`IFFO1 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P5 TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR 
        0.13        11.93        12.66         2.47         0.03         5.46 
TCGA-FZ-5920 TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-HZ-7918 
        2.01        36.20        20.81        12.89         7.66         0.92 
TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8002 
        0.13         0.26        12.13        11.87         0.26         0.79 
TCGA-HZ-8003 TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G 
        0.69         0.92         0.53         0.16         2.99         0.76 
TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7646 
        0.95         6.38         1.51        11.41        49.38         4.77 
TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 
       21.90        15.35        15.65        27.98         4.04         3.62 
TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-8126 
       15.81        19.66        16.04         3.85        15.98         0.56 
TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST 
       17.16        10.82         9.86         7.20        15.12         0.26 
TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 
        1.35         4.18         3.62         8.12        13.68        16.80 
TCGA-US-A77E TCGA-US-A77J 
       14.14        18.67 

  IFFO1 MUTATED IFFO1 WILD-TYPE 
           0.62            0.03 
  IFFO1 MUTATED IFFO1 WILD-TYPE 
          43.79           49.38 
  IFFO1 MUTATED IFFO1 WILD-TYPE 
           7.89            7.43 
[1] "0.6 - 43.8 (7.9)" "0.0 - 49.4 (7.4)"
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"IFFO1 WILD-TYPE" "IFFO1 WILD-TYPE" "IFFO1 WILD-TYPE" "IFFO1 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"IFFO1 WILD-TYPE" "IFFO1 WILD-TYPE" "IFFO1 WILD-TYPE" "IFFO1 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"IFFO1 WILD-TYPE" "IFFO1 WILD-TYPE" "IFFO1 WILD-TYPE" "IFFO1 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"IFFO1 WILD-TYPE" "IFFO1 WILD-TYPE" "IFFO1 WILD-TYPE" "IFFO1 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"IFFO1 WILD-TYPE"   "IFFO1 MUTATED"   "IFFO1 MUTATED" "IFFO1 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
  "IFFO1 MUTATED" "IFFO1 WILD-TYPE" "IFFO1 WILD-TYPE" "IFFO1 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"IFFO1 WILD-TYPE" "IFFO1 WILD-TYPE"   "IFFO1 MUTATED" "IFFO1 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"IFFO1 WILD-TYPE"   "IFFO1 MUTATED" "IFFO1 WILD-TYPE" "IFFO1 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"IFFO1 WILD-TYPE" "IFFO1 WILD-TYPE" "IFFO1 WILD-TYPE" "IFFO1 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"IFFO1 WILD-TYPE" "IFFO1 WILD-TYPE" "IFFO1 WILD-TYPE" "IFFO1 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"IFFO1 WILD-TYPE" "IFFO1 WILD-TYPE" "IFFO1 WILD-TYPE"   "IFFO1 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"IFFO1 WILD-TYPE" "IFFO1 WILD-TYPE" "IFFO1 WILD-TYPE" "IFFO1 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
  "IFFO1 MUTATED" "IFFO1 WILD-TYPE" "IFFO1 WILD-TYPE" "IFFO1 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"IFFO1 WILD-TYPE" "IFFO1 WILD-TYPE" "IFFO1 WILD-TYPE" "IFFO1 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"IFFO1 WILD-TYPE" "IFFO1 WILD-TYPE" "IFFO1 WILD-TYPE" "IFFO1 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"IFFO1 WILD-TYPE" "IFFO1 WILD-TYPE" "IFFO1 WILD-TYPE" "IFFO1 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"IFFO1 WILD-TYPE" "IFFO1 WILD-TYPE" "IFFO1 WILD-TYPE" "IFFO1 WILD-TYPE" 
     TCGA-US-A77J 
"IFFO1 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"IFFO1 WILD-TYPE" "IFFO1 WILD-TYPE" "IFFO1 WILD-TYPE" "IFFO1 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"IFFO1 WILD-TYPE" "IFFO1 WILD-TYPE" "IFFO1 WILD-TYPE" "IFFO1 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"IFFO1 WILD-TYPE" "IFFO1 WILD-TYPE" "IFFO1 WILD-TYPE" "IFFO1 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"IFFO1 WILD-TYPE" "IFFO1 WILD-TYPE" "IFFO1 WILD-TYPE" "IFFO1 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"IFFO1 WILD-TYPE"   "IFFO1 MUTATED"   "IFFO1 MUTATED" "IFFO1 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
  "IFFO1 MUTATED" "IFFO1 WILD-TYPE" "IFFO1 WILD-TYPE" "IFFO1 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"IFFO1 WILD-TYPE" "IFFO1 WILD-TYPE"   "IFFO1 MUTATED" "IFFO1 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"IFFO1 WILD-TYPE"   "IFFO1 MUTATED" "IFFO1 WILD-TYPE" "IFFO1 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"IFFO1 WILD-TYPE" "IFFO1 WILD-TYPE" "IFFO1 WILD-TYPE" "IFFO1 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"IFFO1 WILD-TYPE" "IFFO1 WILD-TYPE" "IFFO1 WILD-TYPE" "IFFO1 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"IFFO1 WILD-TYPE" "IFFO1 WILD-TYPE" "IFFO1 WILD-TYPE"   "IFFO1 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"IFFO1 WILD-TYPE" "IFFO1 WILD-TYPE" "IFFO1 WILD-TYPE" "IFFO1 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
  "IFFO1 MUTATED" "IFFO1 WILD-TYPE" "IFFO1 WILD-TYPE" "IFFO1 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"IFFO1 WILD-TYPE" "IFFO1 WILD-TYPE" "IFFO1 WILD-TYPE" "IFFO1 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"IFFO1 WILD-TYPE" "IFFO1 WILD-TYPE" "IFFO1 WILD-TYPE" "IFFO1 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"IFFO1 WILD-TYPE" "IFFO1 WILD-TYPE" "IFFO1 WILD-TYPE" "IFFO1 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"IFFO1 WILD-TYPE" "IFFO1 WILD-TYPE" "IFFO1 WILD-TYPE" "IFFO1 WILD-TYPE" 
     TCGA-US-A77J 
"IFFO1 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"IFFO1 WILD-TYPE" "IFFO1 WILD-TYPE" "IFFO1 WILD-TYPE" "IFFO1 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"IFFO1 WILD-TYPE" "IFFO1 WILD-TYPE" "IFFO1 WILD-TYPE" "IFFO1 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"IFFO1 WILD-TYPE" "IFFO1 WILD-TYPE" "IFFO1 WILD-TYPE" "IFFO1 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"IFFO1 WILD-TYPE" "IFFO1 WILD-TYPE" "IFFO1 WILD-TYPE" "IFFO1 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"IFFO1 WILD-TYPE"   "IFFO1 MUTATED"   "IFFO1 MUTATED" "IFFO1 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
  "IFFO1 MUTATED" "IFFO1 WILD-TYPE" "IFFO1 WILD-TYPE" "IFFO1 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"IFFO1 WILD-TYPE" "IFFO1 WILD-TYPE"   "IFFO1 MUTATED" "IFFO1 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"IFFO1 WILD-TYPE"   "IFFO1 MUTATED" "IFFO1 WILD-TYPE" "IFFO1 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"IFFO1 WILD-TYPE" "IFFO1 WILD-TYPE" "IFFO1 WILD-TYPE" "IFFO1 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"IFFO1 WILD-TYPE" "IFFO1 WILD-TYPE" "IFFO1 WILD-TYPE" "IFFO1 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"IFFO1 WILD-TYPE" "IFFO1 WILD-TYPE" "IFFO1 WILD-TYPE"   "IFFO1 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"IFFO1 WILD-TYPE" "IFFO1 WILD-TYPE" "IFFO1 WILD-TYPE" "IFFO1 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
  "IFFO1 MUTATED" "IFFO1 WILD-TYPE" "IFFO1 WILD-TYPE" "IFFO1 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"IFFO1 WILD-TYPE" "IFFO1 WILD-TYPE" "IFFO1 WILD-TYPE" "IFFO1 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"IFFO1 WILD-TYPE" "IFFO1 WILD-TYPE" "IFFO1 WILD-TYPE" "IFFO1 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"IFFO1 WILD-TYPE" "IFFO1 WILD-TYPE" "IFFO1 WILD-TYPE" "IFFO1 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"IFFO1 WILD-TYPE" "IFFO1 WILD-TYPE" "IFFO1 WILD-TYPE" "IFFO1 WILD-TYPE" 
     TCGA-US-A77J 
"IFFO1 WILD-TYPE" 
[1] "hr=" "1.5"
D181V2, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  IFFO1 MUTATED          0        0         2         4         1        0
  IFFO1 WILD-TYPE        1        4         9        47         1        3
D181V3, multiclass
                 vv
clus              T1+T2 T3+T4
  IFFO1 MUTATED       0     7
  IFFO1 WILD-TYPE     6    59
D181V4, multiclass
       clus
vv      IFFO1 MUTATED IFFO1 WILD-TYPE
  T1+T2             0               6
  T3+T4             7              59
D181V5, binary
                 cls
clus               0  1
  IFFO1 MUTATED    3  4
  IFFO1 WILD-TYPE 14 50
[1] "tbl2"
                 cls
clus              [,1] [,2]
  IFFO1 MUTATED      3    4
  IFFO1 WILD-TYPE   14   50
   clus
vv  IFFO1 MUTATED IFFO1 WILD-TYPE
  0             3              14
  1             4              50
                 vv
clus              M0 M1 MX
  IFFO1 MUTATED    3  0  4
  IFFO1 WILD-TYPE 36  3 26
D181V6, multiclass
    clus
vv   IFFO1 MUTATED IFFO1 WILD-TYPE
  M0             3              36
  M1             0               3
  MX             4              26
D181V7, binary
                 cls
clus               0  1
  IFFO1 MUTATED    3  4
  IFFO1 WILD-TYPE 33 32
[1] "tbl2"
                 cls
clus              [,1] [,2]
  IFFO1 MUTATED      3    4
  IFFO1 WILD-TYPE   33   32
        clus
vv       IFFO1 MUTATED IFFO1 WILD-TYPE
  FEMALE             3              33
  MALE               4              32
                 vv
clus              PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  IFFO1 MUTATED                                     5
  IFFO1 WILD-TYPE                                  60
                 vv
clus              PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  IFFO1 MUTATED                                       2
  IFFO1 WILD-TYPE                                     2
                 vv
clus              PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  IFFO1 MUTATED                                                  0
  IFFO1 WILD-TYPE                                                2
D181V8, multiclass
                                                  clus
vv                                                 IFFO1 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                          5
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                        2
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA             0
                                                  clus
vv                                                 IFFO1 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                           60
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                          2
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA               2
D181V9, continuous
[1] "Remove cluster labels:" "IFFO1 MUTATED"         
clus
  IFFO1 MUTATED IFFO1 WILD-TYPE 
              2              20 
     TCGA-F2-6880      TCGA-FB-A4P5      TCGA-FB-A4P6      TCGA-FB-A5VM 
"IFFO1 WILD-TYPE" "IFFO1 WILD-TYPE" "IFFO1 WILD-TYPE" "IFFO1 WILD-TYPE" 
     TCGA-FB-A78T      TCGA-FB-A7DR      TCGA-H6-8124      TCGA-H6-A45N 
"IFFO1 WILD-TYPE" "IFFO1 WILD-TYPE" "IFFO1 WILD-TYPE" "IFFO1 WILD-TYPE" 
     TCGA-IB-7644      TCGA-IB-7649      TCGA-IB-7885      TCGA-IB-7886 
"IFFO1 WILD-TYPE" "IFFO1 WILD-TYPE" "IFFO1 WILD-TYPE" "IFFO1 WILD-TYPE" 
     TCGA-IB-7887      TCGA-IB-7891      TCGA-IB-8126      TCGA-IB-8127 
"IFFO1 WILD-TYPE" "IFFO1 WILD-TYPE" "IFFO1 WILD-TYPE" "IFFO1 WILD-TYPE" 
     TCGA-IB-A5SS      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"IFFO1 WILD-TYPE" "IFFO1 WILD-TYPE" "IFFO1 WILD-TYPE" "IFFO1 WILD-TYPE" 
D181V10, continuous
[1] "Remove cluster labels:" "IFFO1 MUTATED"         
clus
  IFFO1 MUTATED IFFO1 WILD-TYPE 
              2              17 
     TCGA-FB-A4P5      TCGA-FB-A4P6      TCGA-FB-A5VM      TCGA-FB-A78T 
"IFFO1 WILD-TYPE" "IFFO1 WILD-TYPE" "IFFO1 WILD-TYPE" "IFFO1 WILD-TYPE" 
     TCGA-FB-A7DR      TCGA-H6-8124      TCGA-IB-7644      TCGA-IB-7649 
"IFFO1 WILD-TYPE" "IFFO1 WILD-TYPE" "IFFO1 WILD-TYPE" "IFFO1 WILD-TYPE" 
     TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7891      TCGA-IB-8126 
"IFFO1 WILD-TYPE" "IFFO1 WILD-TYPE" "IFFO1 WILD-TYPE" "IFFO1 WILD-TYPE" 
     TCGA-IB-8127      TCGA-IB-A5SS      TCGA-IB-A6UG      TCGA-LB-A7SX 
"IFFO1 WILD-TYPE" "IFFO1 WILD-TYPE" "IFFO1 WILD-TYPE" "IFFO1 WILD-TYPE" 
     TCGA-OE-A75W 
"IFFO1 WILD-TYPE" 
                 vv
clus              R0 R1 RX
  IFFO1 MUTATED    4  2  1
  IFFO1 WILD-TYPE 38 22  1
D181V11, multiclass
    clus
vv   IFFO1 MUTATED IFFO1 WILD-TYPE
  R0             4              38
  R1             2              22
  RX             1               1
D181V12, continuous

Clustering(182) Variable = C6ORF165 MUTATION ANALYSIS
D182V1, survival
                    sevent
clus2                 0  1
  C6ORF165 MUTATED    1  5
  C6ORF165 WILD-TYPE 39 24
  C6ORF165 MUTATED C6ORF165 WILD-TYPE 
                 6                 63 
  C6ORF165 MUTATED C6ORF165 WILD-TYPE 
                 5                 24 
$`C6ORF165 MUTATED`
TCGA-F2-7276 TCGA-IB-7644 TCGA-IB-7649 TCGA-IB-7651 TCGA-IB-7888 TCGA-IB-7891 
        7.10        11.41        15.35        19.82        43.79        16.04 

$`C6ORF165 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-A44G TCGA-F2-A44H TCGA-FB-A4P5 
       10.98         9.70        11.84         5.03        19.27         0.13 
TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR TCGA-FZ-5920 
       11.93        12.66         2.47         0.03         5.46         2.01 
TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7289 
       36.20        20.81        12.89         7.66        13.02         7.89 
TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 
        0.92         0.66         0.13         0.26        12.13        11.87 
TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 
        0.26         0.62         0.79         0.69         3.95         0.92 
TCGA-HZ-8317 TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH 
        0.53         0.16         2.99         0.76         0.95         6.38 
TCGA-HZ-A4BK TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7652 TCGA-IB-7885 
        1.51        49.38         4.77        21.90        15.65        27.98 
TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7893 TCGA-IB-7897 
        4.04         3.62        15.81        19.66         3.85        15.98 
TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS 
        0.56        17.16        10.82         9.86         7.20        15.12 
TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W TCGA-PZ-A5RE TCGA-Q3-A5QY 
        0.26         1.35         4.18         3.62         8.12        13.68 
TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
       16.80        14.14        18.67 

  C6ORF165 MUTATED C6ORF165 WILD-TYPE 
              7.10               0.03 
  C6ORF165 MUTATED C6ORF165 WILD-TYPE 
             43.79              49.38 
  C6ORF165 MUTATED C6ORF165 WILD-TYPE 
            15.695              6.380 
[1] "7.1 - 43.8 (15.7)" "0.0 - 49.4 (6.4)" 
        TCGA-F2-6879         TCGA-F2-6880         TCGA-F2-7273 
"C6ORF165 WILD-TYPE" "C6ORF165 WILD-TYPE" "C6ORF165 WILD-TYPE" 
        TCGA-F2-7276         TCGA-F2-A44G         TCGA-F2-A44H 
  "C6ORF165 MUTATED" "C6ORF165 WILD-TYPE" "C6ORF165 WILD-TYPE" 
        TCGA-FB-A4P5         TCGA-FB-A4P6         TCGA-FB-A545 
"C6ORF165 WILD-TYPE" "C6ORF165 WILD-TYPE" "C6ORF165 WILD-TYPE" 
        TCGA-FB-A5VM         TCGA-FB-A78T         TCGA-FB-A7DR 
"C6ORF165 WILD-TYPE" "C6ORF165 WILD-TYPE" "C6ORF165 WILD-TYPE" 
        TCGA-FZ-5920         TCGA-FZ-5922         TCGA-FZ-5923 
"C6ORF165 WILD-TYPE" "C6ORF165 WILD-TYPE" "C6ORF165 WILD-TYPE" 
        TCGA-H6-8124         TCGA-H6-A45N         TCGA-H8-A6C1 
"C6ORF165 WILD-TYPE" "C6ORF165 WILD-TYPE" "C6ORF165 WILD-TYPE" 
        TCGA-HZ-7289         TCGA-HZ-7918         TCGA-HZ-7919 
"C6ORF165 WILD-TYPE" "C6ORF165 WILD-TYPE" "C6ORF165 WILD-TYPE" 
        TCGA-HZ-7922         TCGA-HZ-7923         TCGA-HZ-7924 
"C6ORF165 WILD-TYPE" "C6ORF165 WILD-TYPE" "C6ORF165 WILD-TYPE" 
        TCGA-HZ-7925         TCGA-HZ-7926         TCGA-HZ-8001 
"C6ORF165 WILD-TYPE" "C6ORF165 WILD-TYPE" "C6ORF165 WILD-TYPE" 
        TCGA-HZ-8002         TCGA-HZ-8003         TCGA-HZ-8005 
"C6ORF165 WILD-TYPE" "C6ORF165 WILD-TYPE" "C6ORF165 WILD-TYPE" 
        TCGA-HZ-8315         TCGA-HZ-8317         TCGA-HZ-8636 
"C6ORF165 WILD-TYPE" "C6ORF165 WILD-TYPE" "C6ORF165 WILD-TYPE" 
        TCGA-HZ-8638         TCGA-HZ-A49G         TCGA-HZ-A49H 
"C6ORF165 WILD-TYPE" "C6ORF165 WILD-TYPE" "C6ORF165 WILD-TYPE" 
        TCGA-HZ-A4BH         TCGA-HZ-A4BK         TCGA-IB-7644 
"C6ORF165 WILD-TYPE" "C6ORF165 WILD-TYPE"   "C6ORF165 MUTATED" 
        TCGA-IB-7645         TCGA-IB-7646         TCGA-IB-7647 
"C6ORF165 WILD-TYPE" "C6ORF165 WILD-TYPE" "C6ORF165 WILD-TYPE" 
        TCGA-IB-7649         TCGA-IB-7651         TCGA-IB-7652 
  "C6ORF165 MUTATED"   "C6ORF165 MUTATED" "C6ORF165 WILD-TYPE" 
        TCGA-IB-7885         TCGA-IB-7886         TCGA-IB-7887 
"C6ORF165 WILD-TYPE" "C6ORF165 WILD-TYPE" "C6ORF165 WILD-TYPE" 
        TCGA-IB-7888         TCGA-IB-7889         TCGA-IB-7890 
  "C6ORF165 MUTATED" "C6ORF165 WILD-TYPE" "C6ORF165 WILD-TYPE" 
        TCGA-IB-7891         TCGA-IB-7893         TCGA-IB-7897 
  "C6ORF165 MUTATED" "C6ORF165 WILD-TYPE" "C6ORF165 WILD-TYPE" 
        TCGA-IB-8126         TCGA-IB-8127         TCGA-IB-A5SO 
"C6ORF165 WILD-TYPE" "C6ORF165 WILD-TYPE" "C6ORF165 WILD-TYPE" 
        TCGA-IB-A5SP         TCGA-IB-A5SQ         TCGA-IB-A5SS 
"C6ORF165 WILD-TYPE" "C6ORF165 WILD-TYPE" "C6ORF165 WILD-TYPE" 
        TCGA-IB-A5ST         TCGA-IB-A6UG         TCGA-LB-A7SX 
"C6ORF165 WILD-TYPE" "C6ORF165 WILD-TYPE" "C6ORF165 WILD-TYPE" 
        TCGA-OE-A75W         TCGA-PZ-A5RE         TCGA-Q3-A5QY 
"C6ORF165 WILD-TYPE" "C6ORF165 WILD-TYPE" "C6ORF165 WILD-TYPE" 
        TCGA-US-A779         TCGA-US-A77E         TCGA-US-A77J 
"C6ORF165 WILD-TYPE" "C6ORF165 WILD-TYPE" "C6ORF165 WILD-TYPE" 
        TCGA-F2-6879         TCGA-F2-6880         TCGA-F2-7273 
"C6ORF165 WILD-TYPE" "C6ORF165 WILD-TYPE" "C6ORF165 WILD-TYPE" 
        TCGA-F2-7276         TCGA-F2-A44G         TCGA-F2-A44H 
  "C6ORF165 MUTATED" "C6ORF165 WILD-TYPE" "C6ORF165 WILD-TYPE" 
        TCGA-FB-A4P5         TCGA-FB-A4P6         TCGA-FB-A545 
"C6ORF165 WILD-TYPE" "C6ORF165 WILD-TYPE" "C6ORF165 WILD-TYPE" 
        TCGA-FB-A5VM         TCGA-FB-A78T         TCGA-FB-A7DR 
"C6ORF165 WILD-TYPE" "C6ORF165 WILD-TYPE" "C6ORF165 WILD-TYPE" 
        TCGA-FZ-5920         TCGA-FZ-5922         TCGA-FZ-5923 
"C6ORF165 WILD-TYPE" "C6ORF165 WILD-TYPE" "C6ORF165 WILD-TYPE" 
        TCGA-H6-8124         TCGA-H6-A45N         TCGA-H8-A6C1 
"C6ORF165 WILD-TYPE" "C6ORF165 WILD-TYPE" "C6ORF165 WILD-TYPE" 
        TCGA-HZ-7289         TCGA-HZ-7918         TCGA-HZ-7919 
"C6ORF165 WILD-TYPE" "C6ORF165 WILD-TYPE" "C6ORF165 WILD-TYPE" 
        TCGA-HZ-7922         TCGA-HZ-7923         TCGA-HZ-7924 
"C6ORF165 WILD-TYPE" "C6ORF165 WILD-TYPE" "C6ORF165 WILD-TYPE" 
        TCGA-HZ-7925         TCGA-HZ-7926         TCGA-HZ-8001 
"C6ORF165 WILD-TYPE" "C6ORF165 WILD-TYPE" "C6ORF165 WILD-TYPE" 
        TCGA-HZ-8002         TCGA-HZ-8003         TCGA-HZ-8005 
"C6ORF165 WILD-TYPE" "C6ORF165 WILD-TYPE" "C6ORF165 WILD-TYPE" 
        TCGA-HZ-8315         TCGA-HZ-8317         TCGA-HZ-8636 
"C6ORF165 WILD-TYPE" "C6ORF165 WILD-TYPE" "C6ORF165 WILD-TYPE" 
        TCGA-HZ-8638         TCGA-HZ-A49G         TCGA-HZ-A49H 
"C6ORF165 WILD-TYPE" "C6ORF165 WILD-TYPE" "C6ORF165 WILD-TYPE" 
        TCGA-HZ-A4BH         TCGA-HZ-A4BK         TCGA-IB-7644 
"C6ORF165 WILD-TYPE" "C6ORF165 WILD-TYPE"   "C6ORF165 MUTATED" 
        TCGA-IB-7645         TCGA-IB-7646         TCGA-IB-7647 
"C6ORF165 WILD-TYPE" "C6ORF165 WILD-TYPE" "C6ORF165 WILD-TYPE" 
        TCGA-IB-7649         TCGA-IB-7651         TCGA-IB-7652 
  "C6ORF165 MUTATED"   "C6ORF165 MUTATED" "C6ORF165 WILD-TYPE" 
        TCGA-IB-7885         TCGA-IB-7886         TCGA-IB-7887 
"C6ORF165 WILD-TYPE" "C6ORF165 WILD-TYPE" "C6ORF165 WILD-TYPE" 
        TCGA-IB-7888         TCGA-IB-7889         TCGA-IB-7890 
  "C6ORF165 MUTATED" "C6ORF165 WILD-TYPE" "C6ORF165 WILD-TYPE" 
        TCGA-IB-7891         TCGA-IB-7893         TCGA-IB-7897 
  "C6ORF165 MUTATED" "C6ORF165 WILD-TYPE" "C6ORF165 WILD-TYPE" 
        TCGA-IB-8126         TCGA-IB-8127         TCGA-IB-A5SO 
"C6ORF165 WILD-TYPE" "C6ORF165 WILD-TYPE" "C6ORF165 WILD-TYPE" 
        TCGA-IB-A5SP         TCGA-IB-A5SQ         TCGA-IB-A5SS 
"C6ORF165 WILD-TYPE" "C6ORF165 WILD-TYPE" "C6ORF165 WILD-TYPE" 
        TCGA-IB-A5ST         TCGA-IB-A6UG         TCGA-LB-A7SX 
"C6ORF165 WILD-TYPE" "C6ORF165 WILD-TYPE" "C6ORF165 WILD-TYPE" 
        TCGA-OE-A75W         TCGA-PZ-A5RE         TCGA-Q3-A5QY 
"C6ORF165 WILD-TYPE" "C6ORF165 WILD-TYPE" "C6ORF165 WILD-TYPE" 
        TCGA-US-A779         TCGA-US-A77E         TCGA-US-A77J 
"C6ORF165 WILD-TYPE" "C6ORF165 WILD-TYPE" "C6ORF165 WILD-TYPE" 
        TCGA-F2-6879         TCGA-F2-6880         TCGA-F2-7273 
"C6ORF165 WILD-TYPE" "C6ORF165 WILD-TYPE" "C6ORF165 WILD-TYPE" 
        TCGA-F2-7276         TCGA-F2-A44G         TCGA-F2-A44H 
  "C6ORF165 MUTATED" "C6ORF165 WILD-TYPE" "C6ORF165 WILD-TYPE" 
        TCGA-FB-A4P5         TCGA-FB-A4P6         TCGA-FB-A545 
"C6ORF165 WILD-TYPE" "C6ORF165 WILD-TYPE" "C6ORF165 WILD-TYPE" 
        TCGA-FB-A5VM         TCGA-FB-A78T         TCGA-FB-A7DR 
"C6ORF165 WILD-TYPE" "C6ORF165 WILD-TYPE" "C6ORF165 WILD-TYPE" 
        TCGA-FZ-5920         TCGA-FZ-5922         TCGA-FZ-5923 
"C6ORF165 WILD-TYPE" "C6ORF165 WILD-TYPE" "C6ORF165 WILD-TYPE" 
        TCGA-H6-8124         TCGA-H6-A45N         TCGA-H8-A6C1 
"C6ORF165 WILD-TYPE" "C6ORF165 WILD-TYPE" "C6ORF165 WILD-TYPE" 
        TCGA-HZ-7289         TCGA-HZ-7918         TCGA-HZ-7919 
"C6ORF165 WILD-TYPE" "C6ORF165 WILD-TYPE" "C6ORF165 WILD-TYPE" 
        TCGA-HZ-7922         TCGA-HZ-7923         TCGA-HZ-7924 
"C6ORF165 WILD-TYPE" "C6ORF165 WILD-TYPE" "C6ORF165 WILD-TYPE" 
        TCGA-HZ-7925         TCGA-HZ-7926         TCGA-HZ-8001 
"C6ORF165 WILD-TYPE" "C6ORF165 WILD-TYPE" "C6ORF165 WILD-TYPE" 
        TCGA-HZ-8002         TCGA-HZ-8003         TCGA-HZ-8005 
"C6ORF165 WILD-TYPE" "C6ORF165 WILD-TYPE" "C6ORF165 WILD-TYPE" 
        TCGA-HZ-8315         TCGA-HZ-8317         TCGA-HZ-8636 
"C6ORF165 WILD-TYPE" "C6ORF165 WILD-TYPE" "C6ORF165 WILD-TYPE" 
        TCGA-HZ-8638         TCGA-HZ-A49G         TCGA-HZ-A49H 
"C6ORF165 WILD-TYPE" "C6ORF165 WILD-TYPE" "C6ORF165 WILD-TYPE" 
        TCGA-HZ-A4BH         TCGA-HZ-A4BK         TCGA-IB-7644 
"C6ORF165 WILD-TYPE" "C6ORF165 WILD-TYPE"   "C6ORF165 MUTATED" 
        TCGA-IB-7645         TCGA-IB-7646         TCGA-IB-7647 
"C6ORF165 WILD-TYPE" "C6ORF165 WILD-TYPE" "C6ORF165 WILD-TYPE" 
        TCGA-IB-7649         TCGA-IB-7651         TCGA-IB-7652 
  "C6ORF165 MUTATED"   "C6ORF165 MUTATED" "C6ORF165 WILD-TYPE" 
        TCGA-IB-7885         TCGA-IB-7886         TCGA-IB-7887 
"C6ORF165 WILD-TYPE" "C6ORF165 WILD-TYPE" "C6ORF165 WILD-TYPE" 
        TCGA-IB-7888         TCGA-IB-7889         TCGA-IB-7890 
  "C6ORF165 MUTATED" "C6ORF165 WILD-TYPE" "C6ORF165 WILD-TYPE" 
        TCGA-IB-7891         TCGA-IB-7893         TCGA-IB-7897 
  "C6ORF165 MUTATED" "C6ORF165 WILD-TYPE" "C6ORF165 WILD-TYPE" 
        TCGA-IB-8126         TCGA-IB-8127         TCGA-IB-A5SO 
"C6ORF165 WILD-TYPE" "C6ORF165 WILD-TYPE" "C6ORF165 WILD-TYPE" 
        TCGA-IB-A5SP         TCGA-IB-A5SQ         TCGA-IB-A5SS 
"C6ORF165 WILD-TYPE" "C6ORF165 WILD-TYPE" "C6ORF165 WILD-TYPE" 
        TCGA-IB-A5ST         TCGA-IB-A6UG         TCGA-LB-A7SX 
"C6ORF165 WILD-TYPE" "C6ORF165 WILD-TYPE" "C6ORF165 WILD-TYPE" 
        TCGA-OE-A75W         TCGA-PZ-A5RE         TCGA-Q3-A5QY 
"C6ORF165 WILD-TYPE" "C6ORF165 WILD-TYPE" "C6ORF165 WILD-TYPE" 
        TCGA-US-A779         TCGA-US-A77E         TCGA-US-A77J 
"C6ORF165 WILD-TYPE" "C6ORF165 WILD-TYPE" "C6ORF165 WILD-TYPE" 
[1] "hr=" "1.1"
D182V2, continuous
                    vv
clus                 STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  C6ORF165 MUTATED          0        1         1         4         0        1
  C6ORF165 WILD-TYPE        1        3        10        47         2        2
D182V3, multiclass
                    vv
clus                 T1+T2 T3+T4
  C6ORF165 MUTATED       1     6
  C6ORF165 WILD-TYPE     5    60
D182V4, multiclass
       clus
vv      C6ORF165 MUTATED C6ORF165 WILD-TYPE
  T1+T2                1                  5
  T3+T4                6                 60
D182V5, binary
                    cls
clus                  0  1
  C6ORF165 MUTATED    2  5
  C6ORF165 WILD-TYPE 15 49
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  C6ORF165 MUTATED      2    5
  C6ORF165 WILD-TYPE   15   49
   clus
vv  C6ORF165 MUTATED C6ORF165 WILD-TYPE
  0                2                 15
  1                5                 49
                    vv
clus                 M0 M1 MX
  C6ORF165 MUTATED    5  1  1
  C6ORF165 WILD-TYPE 34  2 29
D182V6, multiclass
    clus
vv   C6ORF165 MUTATED C6ORF165 WILD-TYPE
  M0                5                 34
  M1                1                  2
  MX                1                 29
D182V7, binary
                    cls
clus                  0  1
  C6ORF165 MUTATED    4  3
  C6ORF165 WILD-TYPE 32 33
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  C6ORF165 MUTATED      4    3
  C6ORF165 WILD-TYPE   32   33
        clus
vv       C6ORF165 MUTATED C6ORF165 WILD-TYPE
  FEMALE                4                 32
  MALE                  3                 33
                    vv
clus                 PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  C6ORF165 MUTATED                                     7
  C6ORF165 WILD-TYPE                                  58
                    vv
clus                 PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  C6ORF165 MUTATED                                       0
  C6ORF165 WILD-TYPE                                     4
                    vv
clus                 PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  C6ORF165 MUTATED                                                  0
  C6ORF165 WILD-TYPE                                                2
D182V8, multiclass
                                                  clus
vv                                                 C6ORF165 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                             7
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                           0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                0
                                                  clus
vv                                                 C6ORF165 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                              58
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                             4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                  2
D182V9, continuous
D182V10, continuous
                    vv
clus                 R0 R1 RX
  C6ORF165 MUTATED    5  2  0
  C6ORF165 WILD-TYPE 37 22  2
D182V11, multiclass
    clus
vv   C6ORF165 MUTATED C6ORF165 WILD-TYPE
  R0                5                 37
  R1                2                 22
  RX                0                  2
D182V12, continuous

Clustering(183) Variable = RBM33 MUTATION ANALYSIS
D183V1, survival
                 sevent
clus2              0  1
  RBM33 MUTATED    1  6
  RBM33 WILD-TYPE 39 23
  RBM33 MUTATED RBM33 WILD-TYPE 
              7              62 
  RBM33 MUTATED RBM33 WILD-TYPE 
              6              23 
$`RBM33 MUTATED`
TCGA-F2-6879 TCGA-FB-A4P5 TCGA-HZ-8001 TCGA-IB-7645 TCGA-IB-7651 TCGA-IB-7893 
       10.98         0.13         0.62        49.38        19.82         3.85 
TCGA-IB-A5SQ 
        7.20 

$`RBM33 WILD-TYPE`
TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H TCGA-FB-A4P6 
        9.70        11.84         7.10         5.03        19.27        11.93 
TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR TCGA-FZ-5920 TCGA-FZ-5922 
       12.66         2.47         0.03         5.46         2.01        36.20 
TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7289 TCGA-HZ-7918 
       20.81        12.89         7.66        13.02         7.89         0.92 
TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 
        0.66         0.13         0.26        12.13        11.87         0.26 
TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8636 
        0.79         0.69         3.95         0.92         0.53         0.16 
TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 
        2.99         0.76         0.95         6.38         1.51        11.41 
TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7886 
        4.77        21.90        15.35        15.65        27.98         4.04 
TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-7897 
        3.62        43.79        15.81        19.66        16.04        15.98 
TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SS TCGA-IB-A5ST 
        0.56        17.16        10.82         9.86        15.12         0.26 
TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 
        1.35         4.18         3.62         8.12        13.68        16.80 
TCGA-US-A77E TCGA-US-A77J 
       14.14        18.67 

  RBM33 MUTATED RBM33 WILD-TYPE 
           0.13            0.03 
  RBM33 MUTATED RBM33 WILD-TYPE 
          49.38           43.79 
  RBM33 MUTATED RBM33 WILD-TYPE 
          7.200           7.775 
[1] "0.1 - 49.4 (7.2)" "0.0 - 43.8 (7.8)"
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
  "RBM33 MUTATED" "RBM33 WILD-TYPE" "RBM33 WILD-TYPE" "RBM33 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"RBM33 WILD-TYPE" "RBM33 WILD-TYPE"   "RBM33 MUTATED" "RBM33 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"RBM33 WILD-TYPE" "RBM33 WILD-TYPE" "RBM33 WILD-TYPE" "RBM33 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"RBM33 WILD-TYPE" "RBM33 WILD-TYPE" "RBM33 WILD-TYPE" "RBM33 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"RBM33 WILD-TYPE" "RBM33 WILD-TYPE" "RBM33 WILD-TYPE" "RBM33 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"RBM33 WILD-TYPE" "RBM33 WILD-TYPE" "RBM33 WILD-TYPE" "RBM33 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"RBM33 WILD-TYPE" "RBM33 WILD-TYPE"   "RBM33 MUTATED" "RBM33 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"RBM33 WILD-TYPE" "RBM33 WILD-TYPE" "RBM33 WILD-TYPE" "RBM33 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"RBM33 WILD-TYPE" "RBM33 WILD-TYPE" "RBM33 WILD-TYPE" "RBM33 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"RBM33 WILD-TYPE" "RBM33 WILD-TYPE" "RBM33 WILD-TYPE"   "RBM33 MUTATED" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"RBM33 WILD-TYPE" "RBM33 WILD-TYPE" "RBM33 WILD-TYPE"   "RBM33 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"RBM33 WILD-TYPE" "RBM33 WILD-TYPE" "RBM33 WILD-TYPE" "RBM33 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"RBM33 WILD-TYPE" "RBM33 WILD-TYPE" "RBM33 WILD-TYPE" "RBM33 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
  "RBM33 MUTATED" "RBM33 WILD-TYPE" "RBM33 WILD-TYPE" "RBM33 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"RBM33 WILD-TYPE" "RBM33 WILD-TYPE"   "RBM33 MUTATED" "RBM33 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"RBM33 WILD-TYPE" "RBM33 WILD-TYPE" "RBM33 WILD-TYPE" "RBM33 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"RBM33 WILD-TYPE" "RBM33 WILD-TYPE" "RBM33 WILD-TYPE" "RBM33 WILD-TYPE" 
     TCGA-US-A77J 
"RBM33 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
  "RBM33 MUTATED" "RBM33 WILD-TYPE" "RBM33 WILD-TYPE" "RBM33 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"RBM33 WILD-TYPE" "RBM33 WILD-TYPE"   "RBM33 MUTATED" "RBM33 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"RBM33 WILD-TYPE" "RBM33 WILD-TYPE" "RBM33 WILD-TYPE" "RBM33 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"RBM33 WILD-TYPE" "RBM33 WILD-TYPE" "RBM33 WILD-TYPE" "RBM33 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"RBM33 WILD-TYPE" "RBM33 WILD-TYPE" "RBM33 WILD-TYPE" "RBM33 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"RBM33 WILD-TYPE" "RBM33 WILD-TYPE" "RBM33 WILD-TYPE" "RBM33 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"RBM33 WILD-TYPE" "RBM33 WILD-TYPE"   "RBM33 MUTATED" "RBM33 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"RBM33 WILD-TYPE" "RBM33 WILD-TYPE" "RBM33 WILD-TYPE" "RBM33 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"RBM33 WILD-TYPE" "RBM33 WILD-TYPE" "RBM33 WILD-TYPE" "RBM33 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"RBM33 WILD-TYPE" "RBM33 WILD-TYPE" "RBM33 WILD-TYPE"   "RBM33 MUTATED" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"RBM33 WILD-TYPE" "RBM33 WILD-TYPE" "RBM33 WILD-TYPE"   "RBM33 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"RBM33 WILD-TYPE" "RBM33 WILD-TYPE" "RBM33 WILD-TYPE" "RBM33 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"RBM33 WILD-TYPE" "RBM33 WILD-TYPE" "RBM33 WILD-TYPE" "RBM33 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
  "RBM33 MUTATED" "RBM33 WILD-TYPE" "RBM33 WILD-TYPE" "RBM33 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"RBM33 WILD-TYPE" "RBM33 WILD-TYPE"   "RBM33 MUTATED" "RBM33 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"RBM33 WILD-TYPE" "RBM33 WILD-TYPE" "RBM33 WILD-TYPE" "RBM33 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"RBM33 WILD-TYPE" "RBM33 WILD-TYPE" "RBM33 WILD-TYPE" "RBM33 WILD-TYPE" 
     TCGA-US-A77J 
"RBM33 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
  "RBM33 MUTATED" "RBM33 WILD-TYPE" "RBM33 WILD-TYPE" "RBM33 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"RBM33 WILD-TYPE" "RBM33 WILD-TYPE"   "RBM33 MUTATED" "RBM33 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"RBM33 WILD-TYPE" "RBM33 WILD-TYPE" "RBM33 WILD-TYPE" "RBM33 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"RBM33 WILD-TYPE" "RBM33 WILD-TYPE" "RBM33 WILD-TYPE" "RBM33 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"RBM33 WILD-TYPE" "RBM33 WILD-TYPE" "RBM33 WILD-TYPE" "RBM33 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"RBM33 WILD-TYPE" "RBM33 WILD-TYPE" "RBM33 WILD-TYPE" "RBM33 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"RBM33 WILD-TYPE" "RBM33 WILD-TYPE"   "RBM33 MUTATED" "RBM33 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"RBM33 WILD-TYPE" "RBM33 WILD-TYPE" "RBM33 WILD-TYPE" "RBM33 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"RBM33 WILD-TYPE" "RBM33 WILD-TYPE" "RBM33 WILD-TYPE" "RBM33 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"RBM33 WILD-TYPE" "RBM33 WILD-TYPE" "RBM33 WILD-TYPE"   "RBM33 MUTATED" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"RBM33 WILD-TYPE" "RBM33 WILD-TYPE" "RBM33 WILD-TYPE"   "RBM33 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"RBM33 WILD-TYPE" "RBM33 WILD-TYPE" "RBM33 WILD-TYPE" "RBM33 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"RBM33 WILD-TYPE" "RBM33 WILD-TYPE" "RBM33 WILD-TYPE" "RBM33 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
  "RBM33 MUTATED" "RBM33 WILD-TYPE" "RBM33 WILD-TYPE" "RBM33 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"RBM33 WILD-TYPE" "RBM33 WILD-TYPE"   "RBM33 MUTATED" "RBM33 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"RBM33 WILD-TYPE" "RBM33 WILD-TYPE" "RBM33 WILD-TYPE" "RBM33 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"RBM33 WILD-TYPE" "RBM33 WILD-TYPE" "RBM33 WILD-TYPE" "RBM33 WILD-TYPE" 
     TCGA-US-A77J 
"RBM33 WILD-TYPE" 
[1] "hr=" "1.3"
D183V2, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  RBM33 MUTATED          0        1         1         4         1        0
  RBM33 WILD-TYPE        1        3        10        47         1        3
D183V3, multiclass
                 vv
clus              T1+T2 T3+T4
  RBM33 MUTATED       1     6
  RBM33 WILD-TYPE     5    60
D183V4, multiclass
       clus
vv      RBM33 MUTATED RBM33 WILD-TYPE
  T1+T2             1               5
  T3+T4             6              60
D183V5, binary
                 cls
clus               0  1
  RBM33 MUTATED    3  4
  RBM33 WILD-TYPE 14 50
[1] "tbl2"
                 cls
clus              [,1] [,2]
  RBM33 MUTATED      3    4
  RBM33 WILD-TYPE   14   50
   clus
vv  RBM33 MUTATED RBM33 WILD-TYPE
  0             3              14
  1             4              50
                 vv
clus              M0 M1 MX
  RBM33 MUTATED    5  0  2
  RBM33 WILD-TYPE 34  3 28
D183V6, multiclass
    clus
vv   RBM33 MUTATED RBM33 WILD-TYPE
  M0             5              34
  M1             0               3
  MX             2              28
D183V7, binary
                 cls
clus               0  1
  RBM33 MUTATED    4  3
  RBM33 WILD-TYPE 32 33
[1] "tbl2"
                 cls
clus              [,1] [,2]
  RBM33 MUTATED      4    3
  RBM33 WILD-TYPE   32   33
        clus
vv       RBM33 MUTATED RBM33 WILD-TYPE
  FEMALE             4              32
  MALE               3              33
                 vv
clus              PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  RBM33 MUTATED                                     6
  RBM33 WILD-TYPE                                  59
                 vv
clus              PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  RBM33 MUTATED                                       0
  RBM33 WILD-TYPE                                     4
                 vv
clus              PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  RBM33 MUTATED                                                  0
  RBM33 WILD-TYPE                                                2
D183V8, multiclass
                                                  clus
vv                                                 RBM33 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                          6
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                        0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA             0
                                                  clus
vv                                                 RBM33 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                           59
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                          4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA               2
D183V9, continuous
[1] "Remove cluster labels:" "RBM33 MUTATED"         
clus
  RBM33 MUTATED RBM33 WILD-TYPE 
              2              20 
     TCGA-F2-6880      TCGA-FB-A4P6      TCGA-FB-A5VM      TCGA-FB-A78T 
"RBM33 WILD-TYPE" "RBM33 WILD-TYPE" "RBM33 WILD-TYPE" "RBM33 WILD-TYPE" 
     TCGA-FB-A7DR      TCGA-H6-8124      TCGA-H6-A45N      TCGA-H8-A6C1 
"RBM33 WILD-TYPE" "RBM33 WILD-TYPE" "RBM33 WILD-TYPE" "RBM33 WILD-TYPE" 
     TCGA-IB-7644      TCGA-IB-7649      TCGA-IB-7885      TCGA-IB-7886 
"RBM33 WILD-TYPE" "RBM33 WILD-TYPE" "RBM33 WILD-TYPE" "RBM33 WILD-TYPE" 
     TCGA-IB-7887      TCGA-IB-7891      TCGA-IB-8126      TCGA-IB-8127 
"RBM33 WILD-TYPE" "RBM33 WILD-TYPE" "RBM33 WILD-TYPE" "RBM33 WILD-TYPE" 
     TCGA-IB-A5SS      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"RBM33 WILD-TYPE" "RBM33 WILD-TYPE" "RBM33 WILD-TYPE" "RBM33 WILD-TYPE" 
D183V10, continuous
[1] "Remove cluster labels:" "RBM33 MUTATED"         
clus
  RBM33 MUTATED RBM33 WILD-TYPE 
              2              17 
     TCGA-FB-A4P6      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"RBM33 WILD-TYPE" "RBM33 WILD-TYPE" "RBM33 WILD-TYPE" "RBM33 WILD-TYPE" 
     TCGA-H6-8124      TCGA-H8-A6C1      TCGA-IB-7644      TCGA-IB-7649 
"RBM33 WILD-TYPE" "RBM33 WILD-TYPE" "RBM33 WILD-TYPE" "RBM33 WILD-TYPE" 
     TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7891      TCGA-IB-8126 
"RBM33 WILD-TYPE" "RBM33 WILD-TYPE" "RBM33 WILD-TYPE" "RBM33 WILD-TYPE" 
     TCGA-IB-8127      TCGA-IB-A5SS      TCGA-IB-A6UG      TCGA-LB-A7SX 
"RBM33 WILD-TYPE" "RBM33 WILD-TYPE" "RBM33 WILD-TYPE" "RBM33 WILD-TYPE" 
     TCGA-OE-A75W 
"RBM33 WILD-TYPE" 
                 vv
clus              R0 R1 RX
  RBM33 MUTATED    7  0  0
  RBM33 WILD-TYPE 35 24  2
D183V11, multiclass
    clus
vv   RBM33 MUTATED RBM33 WILD-TYPE
  R0             7              35
  R1             0              24
  RX             0               2
D183V12, continuous

Clustering(184) Variable = OSBPL1A MUTATION ANALYSIS
D184V1, survival
                   sevent
clus2                0  1
  OSBPL1A MUTATED    3  3
  OSBPL1A WILD-TYPE 37 26
  OSBPL1A MUTATED OSBPL1A WILD-TYPE 
                6                63 
  OSBPL1A MUTATED OSBPL1A WILD-TYPE 
                3                26 
$`OSBPL1A MUTATED`
TCGA-FB-A4P5 TCGA-HZ-7919 TCGA-HZ-7923 TCGA-IB-7646 TCGA-IB-7651 TCGA-IB-7891 
        0.13         0.66         0.26         4.77        19.82        16.04 

$`OSBPL1A WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR TCGA-FZ-5920 
       11.93        12.66         2.47         0.03         5.46         2.01 
TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7289 
       36.20        20.81        12.89         7.66        13.02         7.89 
TCGA-HZ-7918 TCGA-HZ-7922 TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8001 
        0.92         0.13        12.13        11.87         0.26         0.62 
TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8636 
        0.79         0.69         3.95         0.92         0.53         0.16 
TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 
        2.99         0.76         0.95         6.38         1.51        11.41 
TCGA-IB-7645 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7886 
       49.38        21.90        15.35        15.65        27.98         4.04 
TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7893 TCGA-IB-7897 
        3.62        43.79        15.81        19.66         3.85        15.98 
TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS 
        0.56        17.16        10.82         9.86         7.20        15.12 
TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W TCGA-PZ-A5RE TCGA-Q3-A5QY 
        0.26         1.35         4.18         3.62         8.12        13.68 
TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
       16.80        14.14        18.67 

  OSBPL1A MUTATED OSBPL1A WILD-TYPE 
             0.13              0.03 
  OSBPL1A MUTATED OSBPL1A WILD-TYPE 
            19.82             49.38 
  OSBPL1A MUTATED OSBPL1A WILD-TYPE 
            2.715             7.890 
[1] "0.1 - 19.8 (2.7)" "0.0 - 49.4 (7.9)"
       TCGA-F2-6879        TCGA-F2-6880        TCGA-F2-7273        TCGA-F2-7276 
"OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" 
       TCGA-F2-A44G        TCGA-F2-A44H        TCGA-FB-A4P5        TCGA-FB-A4P6 
"OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE"   "OSBPL1A MUTATED" "OSBPL1A WILD-TYPE" 
       TCGA-FB-A545        TCGA-FB-A5VM        TCGA-FB-A78T        TCGA-FB-A7DR 
"OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" 
       TCGA-FZ-5920        TCGA-FZ-5922        TCGA-FZ-5923        TCGA-H6-8124 
"OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" 
       TCGA-H6-A45N        TCGA-H8-A6C1        TCGA-HZ-7289        TCGA-HZ-7918 
"OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" 
       TCGA-HZ-7919        TCGA-HZ-7922        TCGA-HZ-7923        TCGA-HZ-7924 
  "OSBPL1A MUTATED" "OSBPL1A WILD-TYPE"   "OSBPL1A MUTATED" "OSBPL1A WILD-TYPE" 
       TCGA-HZ-7925        TCGA-HZ-7926        TCGA-HZ-8001        TCGA-HZ-8002 
"OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" 
       TCGA-HZ-8003        TCGA-HZ-8005        TCGA-HZ-8315        TCGA-HZ-8317 
"OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" 
       TCGA-HZ-8636        TCGA-HZ-8638        TCGA-HZ-A49G        TCGA-HZ-A49H 
"OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" 
       TCGA-HZ-A4BH        TCGA-HZ-A4BK        TCGA-IB-7644        TCGA-IB-7645 
"OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" 
       TCGA-IB-7646        TCGA-IB-7647        TCGA-IB-7649        TCGA-IB-7651 
  "OSBPL1A MUTATED" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE"   "OSBPL1A MUTATED" 
       TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-7886        TCGA-IB-7887 
"OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" 
       TCGA-IB-7888        TCGA-IB-7889        TCGA-IB-7890        TCGA-IB-7891 
"OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE"   "OSBPL1A MUTATED" 
       TCGA-IB-7893        TCGA-IB-7897        TCGA-IB-8126        TCGA-IB-8127 
"OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" 
       TCGA-IB-A5SO        TCGA-IB-A5SP        TCGA-IB-A5SQ        TCGA-IB-A5SS 
"OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" 
       TCGA-IB-A5ST        TCGA-IB-A6UG        TCGA-LB-A7SX        TCGA-OE-A75W 
"OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" 
       TCGA-PZ-A5RE        TCGA-Q3-A5QY        TCGA-US-A779        TCGA-US-A77E 
"OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" 
       TCGA-US-A77J 
"OSBPL1A WILD-TYPE" 
       TCGA-F2-6879        TCGA-F2-6880        TCGA-F2-7273        TCGA-F2-7276 
"OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" 
       TCGA-F2-A44G        TCGA-F2-A44H        TCGA-FB-A4P5        TCGA-FB-A4P6 
"OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE"   "OSBPL1A MUTATED" "OSBPL1A WILD-TYPE" 
       TCGA-FB-A545        TCGA-FB-A5VM        TCGA-FB-A78T        TCGA-FB-A7DR 
"OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" 
       TCGA-FZ-5920        TCGA-FZ-5922        TCGA-FZ-5923        TCGA-H6-8124 
"OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" 
       TCGA-H6-A45N        TCGA-H8-A6C1        TCGA-HZ-7289        TCGA-HZ-7918 
"OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" 
       TCGA-HZ-7919        TCGA-HZ-7922        TCGA-HZ-7923        TCGA-HZ-7924 
  "OSBPL1A MUTATED" "OSBPL1A WILD-TYPE"   "OSBPL1A MUTATED" "OSBPL1A WILD-TYPE" 
       TCGA-HZ-7925        TCGA-HZ-7926        TCGA-HZ-8001        TCGA-HZ-8002 
"OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" 
       TCGA-HZ-8003        TCGA-HZ-8005        TCGA-HZ-8315        TCGA-HZ-8317 
"OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" 
       TCGA-HZ-8636        TCGA-HZ-8638        TCGA-HZ-A49G        TCGA-HZ-A49H 
"OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" 
       TCGA-HZ-A4BH        TCGA-HZ-A4BK        TCGA-IB-7644        TCGA-IB-7645 
"OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" 
       TCGA-IB-7646        TCGA-IB-7647        TCGA-IB-7649        TCGA-IB-7651 
  "OSBPL1A MUTATED" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE"   "OSBPL1A MUTATED" 
       TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-7886        TCGA-IB-7887 
"OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" 
       TCGA-IB-7888        TCGA-IB-7889        TCGA-IB-7890        TCGA-IB-7891 
"OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE"   "OSBPL1A MUTATED" 
       TCGA-IB-7893        TCGA-IB-7897        TCGA-IB-8126        TCGA-IB-8127 
"OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" 
       TCGA-IB-A5SO        TCGA-IB-A5SP        TCGA-IB-A5SQ        TCGA-IB-A5SS 
"OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" 
       TCGA-IB-A5ST        TCGA-IB-A6UG        TCGA-LB-A7SX        TCGA-OE-A75W 
"OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" 
       TCGA-PZ-A5RE        TCGA-Q3-A5QY        TCGA-US-A779        TCGA-US-A77E 
"OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" 
       TCGA-US-A77J 
"OSBPL1A WILD-TYPE" 
       TCGA-F2-6879        TCGA-F2-6880        TCGA-F2-7273        TCGA-F2-7276 
"OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" 
       TCGA-F2-A44G        TCGA-F2-A44H        TCGA-FB-A4P5        TCGA-FB-A4P6 
"OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE"   "OSBPL1A MUTATED" "OSBPL1A WILD-TYPE" 
       TCGA-FB-A545        TCGA-FB-A5VM        TCGA-FB-A78T        TCGA-FB-A7DR 
"OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" 
       TCGA-FZ-5920        TCGA-FZ-5922        TCGA-FZ-5923        TCGA-H6-8124 
"OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" 
       TCGA-H6-A45N        TCGA-H8-A6C1        TCGA-HZ-7289        TCGA-HZ-7918 
"OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" 
       TCGA-HZ-7919        TCGA-HZ-7922        TCGA-HZ-7923        TCGA-HZ-7924 
  "OSBPL1A MUTATED" "OSBPL1A WILD-TYPE"   "OSBPL1A MUTATED" "OSBPL1A WILD-TYPE" 
       TCGA-HZ-7925        TCGA-HZ-7926        TCGA-HZ-8001        TCGA-HZ-8002 
"OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" 
       TCGA-HZ-8003        TCGA-HZ-8005        TCGA-HZ-8315        TCGA-HZ-8317 
"OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" 
       TCGA-HZ-8636        TCGA-HZ-8638        TCGA-HZ-A49G        TCGA-HZ-A49H 
"OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" 
       TCGA-HZ-A4BH        TCGA-HZ-A4BK        TCGA-IB-7644        TCGA-IB-7645 
"OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" 
       TCGA-IB-7646        TCGA-IB-7647        TCGA-IB-7649        TCGA-IB-7651 
  "OSBPL1A MUTATED" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE"   "OSBPL1A MUTATED" 
       TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-7886        TCGA-IB-7887 
"OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" 
       TCGA-IB-7888        TCGA-IB-7889        TCGA-IB-7890        TCGA-IB-7891 
"OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE"   "OSBPL1A MUTATED" 
       TCGA-IB-7893        TCGA-IB-7897        TCGA-IB-8126        TCGA-IB-8127 
"OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" 
       TCGA-IB-A5SO        TCGA-IB-A5SP        TCGA-IB-A5SQ        TCGA-IB-A5SS 
"OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" 
       TCGA-IB-A5ST        TCGA-IB-A6UG        TCGA-LB-A7SX        TCGA-OE-A75W 
"OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" 
       TCGA-PZ-A5RE        TCGA-Q3-A5QY        TCGA-US-A779        TCGA-US-A77E 
"OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" "OSBPL1A WILD-TYPE" 
       TCGA-US-A77J 
"OSBPL1A WILD-TYPE" 
[1] "hr=" "1.5"
D184V2, continuous
                   vv
clus                STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  OSBPL1A MUTATED          0        0         1         5         0        0
  OSBPL1A WILD-TYPE        1        4        10        46         2        3
D184V3, multiclass
                   vv
clus                T1+T2 T3+T4
  OSBPL1A MUTATED       0     6
  OSBPL1A WILD-TYPE     6    60
D184V4, multiclass
       clus
vv      OSBPL1A MUTATED OSBPL1A WILD-TYPE
  T1+T2               0                 6
  T3+T4               6                60
D184V5, binary
                   cls
clus                 0  1
  OSBPL1A MUTATED    1  5
  OSBPL1A WILD-TYPE 16 49
[1] "tbl2"
                   cls
clus                [,1] [,2]
  OSBPL1A MUTATED      1    5
  OSBPL1A WILD-TYPE   16   49
   clus
vv  OSBPL1A MUTATED OSBPL1A WILD-TYPE
  0               1                16
  1               5                49
                   vv
clus                M0 M1 MX
  OSBPL1A MUTATED    4  0  2
  OSBPL1A WILD-TYPE 35  3 28
D184V6, multiclass
    clus
vv   OSBPL1A MUTATED OSBPL1A WILD-TYPE
  M0               4                35
  M1               0                 3
  MX               2                28
D184V7, binary
                   cls
clus                 0  1
  OSBPL1A MUTATED    3  3
  OSBPL1A WILD-TYPE 33 33
[1] "tbl2"
                   cls
clus                [,1] [,2]
  OSBPL1A MUTATED      3    3
  OSBPL1A WILD-TYPE   33   33
        clus
vv       OSBPL1A MUTATED OSBPL1A WILD-TYPE
  FEMALE               3                33
  MALE                 3                33
                   vv
clus                PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  OSBPL1A MUTATED                                     6
  OSBPL1A WILD-TYPE                                  59
                   vv
clus                PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  OSBPL1A MUTATED                                       0
  OSBPL1A WILD-TYPE                                     4
                   vv
clus                PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  OSBPL1A MUTATED                                                  0
  OSBPL1A WILD-TYPE                                                2
D184V8, multiclass
                                                  clus
vv                                                 OSBPL1A MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                            6
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                          0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA               0
                                                  clus
vv                                                 OSBPL1A WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                             59
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                            4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                 2
D184V9, continuous
D184V10, continuous
                   vv
clus                R0 R1 RX
  OSBPL1A MUTATED    4  2  0
  OSBPL1A WILD-TYPE 38 22  2
D184V11, multiclass
    clus
vv   OSBPL1A MUTATED OSBPL1A WILD-TYPE
  R0               4                38
  R1               2                22
  RX               0                 2
D184V12, continuous

Clustering(185) Variable = PPP1R10 MUTATION ANALYSIS
D185V1, survival
                   sevent
clus2                0  1
  PPP1R10 MUTATED    6  4
  PPP1R10 WILD-TYPE 34 25
  PPP1R10 MUTATED PPP1R10 WILD-TYPE 
               10                59 
  PPP1R10 MUTATED PPP1R10 WILD-TYPE 
                4                25 
$`PPP1R10 MUTATED`
TCGA-F2-6880 TCGA-F2-A44H TCGA-HZ-7923 TCGA-HZ-8003 TCGA-HZ-A49G TCGA-HZ-A4BK 
        9.70        19.27         0.26         0.69         0.76         1.51 
TCGA-IB-7646 TCGA-IB-7888 TCGA-IB-7893 TCGA-IB-7897 
        4.77        43.79         3.85        15.98 

$`PPP1R10 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-FB-A4P5 TCGA-FB-A4P6 
       10.98        11.84         7.10         5.03         0.13        11.93 
TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR TCGA-FZ-5920 TCGA-FZ-5922 
       12.66         2.47         0.03         5.46         2.01        36.20 
TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7289 TCGA-HZ-7918 
       20.81        12.89         7.66        13.02         7.89         0.92 
TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8001 
        0.66         0.13        12.13        11.87         0.26         0.62 
TCGA-HZ-8002 TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8636 TCGA-HZ-8638 
        0.79         3.95         0.92         0.53         0.16         2.99 
TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7647 TCGA-IB-7649 
        0.95         6.38        11.41        49.38        21.90        15.35 
TCGA-IB-7651 TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7889 
       19.82        15.65        27.98         4.04         3.62        15.81 
TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP 
       19.66        16.04         0.56        17.16        10.82         9.86 
TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W 
        7.20        15.12         0.26         1.35         4.18         3.62 
TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
        8.12        13.68        16.80        14.14        18.67 

  PPP1R10 MUTATED PPP1R10 WILD-TYPE 
             0.26              0.03 
  PPP1R10 MUTATED PPP1R10 WILD-TYPE 
            43.79             49.38 
  PPP1R10 MUTATED PPP1R10 WILD-TYPE 
             4.31              7.89 
[1] "0.3 - 43.8 (4.3)" "0.0 - 49.4 (7.9)"
       TCGA-F2-6879        TCGA-F2-6880        TCGA-F2-7273        TCGA-F2-7276 
"PPP1R10 WILD-TYPE"   "PPP1R10 MUTATED" "PPP1R10 WILD-TYPE" "PPP1R10 WILD-TYPE" 
       TCGA-F2-A44G        TCGA-F2-A44H        TCGA-FB-A4P5        TCGA-FB-A4P6 
"PPP1R10 WILD-TYPE"   "PPP1R10 MUTATED" "PPP1R10 WILD-TYPE" "PPP1R10 WILD-TYPE" 
       TCGA-FB-A545        TCGA-FB-A5VM        TCGA-FB-A78T        TCGA-FB-A7DR 
"PPP1R10 WILD-TYPE" "PPP1R10 WILD-TYPE" "PPP1R10 WILD-TYPE" "PPP1R10 WILD-TYPE" 
       TCGA-FZ-5920        TCGA-FZ-5922        TCGA-FZ-5923        TCGA-H6-8124 
"PPP1R10 WILD-TYPE" "PPP1R10 WILD-TYPE" "PPP1R10 WILD-TYPE" "PPP1R10 WILD-TYPE" 
       TCGA-H6-A45N        TCGA-H8-A6C1        TCGA-HZ-7289        TCGA-HZ-7918 
"PPP1R10 WILD-TYPE" "PPP1R10 WILD-TYPE" "PPP1R10 WILD-TYPE" "PPP1R10 WILD-TYPE" 
       TCGA-HZ-7919        TCGA-HZ-7922        TCGA-HZ-7923        TCGA-HZ-7924 
"PPP1R10 WILD-TYPE" "PPP1R10 WILD-TYPE"   "PPP1R10 MUTATED" "PPP1R10 WILD-TYPE" 
       TCGA-HZ-7925        TCGA-HZ-7926        TCGA-HZ-8001        TCGA-HZ-8002 
"PPP1R10 WILD-TYPE" "PPP1R10 WILD-TYPE" "PPP1R10 WILD-TYPE" "PPP1R10 WILD-TYPE" 
       TCGA-HZ-8003        TCGA-HZ-8005        TCGA-HZ-8315        TCGA-HZ-8317 
  "PPP1R10 MUTATED" "PPP1R10 WILD-TYPE" "PPP1R10 WILD-TYPE" "PPP1R10 WILD-TYPE" 
       TCGA-HZ-8636        TCGA-HZ-8638        TCGA-HZ-A49G        TCGA-HZ-A49H 
"PPP1R10 WILD-TYPE" "PPP1R10 WILD-TYPE"   "PPP1R10 MUTATED" "PPP1R10 WILD-TYPE" 
       TCGA-HZ-A4BH        TCGA-HZ-A4BK        TCGA-IB-7644        TCGA-IB-7645 
"PPP1R10 WILD-TYPE"   "PPP1R10 MUTATED" "PPP1R10 WILD-TYPE" "PPP1R10 WILD-TYPE" 
       TCGA-IB-7646        TCGA-IB-7647        TCGA-IB-7649        TCGA-IB-7651 
  "PPP1R10 MUTATED" "PPP1R10 WILD-TYPE" "PPP1R10 WILD-TYPE" "PPP1R10 WILD-TYPE" 
       TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-7886        TCGA-IB-7887 
"PPP1R10 WILD-TYPE" "PPP1R10 WILD-TYPE" "PPP1R10 WILD-TYPE" "PPP1R10 WILD-TYPE" 
       TCGA-IB-7888        TCGA-IB-7889        TCGA-IB-7890        TCGA-IB-7891 
  "PPP1R10 MUTATED" "PPP1R10 WILD-TYPE" "PPP1R10 WILD-TYPE" "PPP1R10 WILD-TYPE" 
       TCGA-IB-7893        TCGA-IB-7897        TCGA-IB-8126        TCGA-IB-8127 
  "PPP1R10 MUTATED"   "PPP1R10 MUTATED" "PPP1R10 WILD-TYPE" "PPP1R10 WILD-TYPE" 
       TCGA-IB-A5SO        TCGA-IB-A5SP        TCGA-IB-A5SQ        TCGA-IB-A5SS 
"PPP1R10 WILD-TYPE" "PPP1R10 WILD-TYPE" "PPP1R10 WILD-TYPE" "PPP1R10 WILD-TYPE" 
       TCGA-IB-A5ST        TCGA-IB-A6UG        TCGA-LB-A7SX        TCGA-OE-A75W 
"PPP1R10 WILD-TYPE" "PPP1R10 WILD-TYPE" "PPP1R10 WILD-TYPE" "PPP1R10 WILD-TYPE" 
       TCGA-PZ-A5RE        TCGA-Q3-A5QY        TCGA-US-A779        TCGA-US-A77E 
"PPP1R10 WILD-TYPE" "PPP1R10 WILD-TYPE" "PPP1R10 WILD-TYPE" "PPP1R10 WILD-TYPE" 
       TCGA-US-A77J 
"PPP1R10 WILD-TYPE" 
       TCGA-F2-6879        TCGA-F2-6880        TCGA-F2-7273        TCGA-F2-7276 
"PPP1R10 WILD-TYPE"   "PPP1R10 MUTATED" "PPP1R10 WILD-TYPE" "PPP1R10 WILD-TYPE" 
       TCGA-F2-A44G        TCGA-F2-A44H        TCGA-FB-A4P5        TCGA-FB-A4P6 
"PPP1R10 WILD-TYPE"   "PPP1R10 MUTATED" "PPP1R10 WILD-TYPE" "PPP1R10 WILD-TYPE" 
       TCGA-FB-A545        TCGA-FB-A5VM        TCGA-FB-A78T        TCGA-FB-A7DR 
"PPP1R10 WILD-TYPE" "PPP1R10 WILD-TYPE" "PPP1R10 WILD-TYPE" "PPP1R10 WILD-TYPE" 
       TCGA-FZ-5920        TCGA-FZ-5922        TCGA-FZ-5923        TCGA-H6-8124 
"PPP1R10 WILD-TYPE" "PPP1R10 WILD-TYPE" "PPP1R10 WILD-TYPE" "PPP1R10 WILD-TYPE" 
       TCGA-H6-A45N        TCGA-H8-A6C1        TCGA-HZ-7289        TCGA-HZ-7918 
"PPP1R10 WILD-TYPE" "PPP1R10 WILD-TYPE" "PPP1R10 WILD-TYPE" "PPP1R10 WILD-TYPE" 
       TCGA-HZ-7919        TCGA-HZ-7922        TCGA-HZ-7923        TCGA-HZ-7924 
"PPP1R10 WILD-TYPE" "PPP1R10 WILD-TYPE"   "PPP1R10 MUTATED" "PPP1R10 WILD-TYPE" 
       TCGA-HZ-7925        TCGA-HZ-7926        TCGA-HZ-8001        TCGA-HZ-8002 
"PPP1R10 WILD-TYPE" "PPP1R10 WILD-TYPE" "PPP1R10 WILD-TYPE" "PPP1R10 WILD-TYPE" 
       TCGA-HZ-8003        TCGA-HZ-8005        TCGA-HZ-8315        TCGA-HZ-8317 
  "PPP1R10 MUTATED" "PPP1R10 WILD-TYPE" "PPP1R10 WILD-TYPE" "PPP1R10 WILD-TYPE" 
       TCGA-HZ-8636        TCGA-HZ-8638        TCGA-HZ-A49G        TCGA-HZ-A49H 
"PPP1R10 WILD-TYPE" "PPP1R10 WILD-TYPE"   "PPP1R10 MUTATED" "PPP1R10 WILD-TYPE" 
       TCGA-HZ-A4BH        TCGA-HZ-A4BK        TCGA-IB-7644        TCGA-IB-7645 
"PPP1R10 WILD-TYPE"   "PPP1R10 MUTATED" "PPP1R10 WILD-TYPE" "PPP1R10 WILD-TYPE" 
       TCGA-IB-7646        TCGA-IB-7647        TCGA-IB-7649        TCGA-IB-7651 
  "PPP1R10 MUTATED" "PPP1R10 WILD-TYPE" "PPP1R10 WILD-TYPE" "PPP1R10 WILD-TYPE" 
       TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-7886        TCGA-IB-7887 
"PPP1R10 WILD-TYPE" "PPP1R10 WILD-TYPE" "PPP1R10 WILD-TYPE" "PPP1R10 WILD-TYPE" 
       TCGA-IB-7888        TCGA-IB-7889        TCGA-IB-7890        TCGA-IB-7891 
  "PPP1R10 MUTATED" "PPP1R10 WILD-TYPE" "PPP1R10 WILD-TYPE" "PPP1R10 WILD-TYPE" 
       TCGA-IB-7893        TCGA-IB-7897        TCGA-IB-8126        TCGA-IB-8127 
  "PPP1R10 MUTATED"   "PPP1R10 MUTATED" "PPP1R10 WILD-TYPE" "PPP1R10 WILD-TYPE" 
       TCGA-IB-A5SO        TCGA-IB-A5SP        TCGA-IB-A5SQ        TCGA-IB-A5SS 
"PPP1R10 WILD-TYPE" "PPP1R10 WILD-TYPE" "PPP1R10 WILD-TYPE" "PPP1R10 WILD-TYPE" 
       TCGA-IB-A5ST        TCGA-IB-A6UG        TCGA-LB-A7SX        TCGA-OE-A75W 
"PPP1R10 WILD-TYPE" "PPP1R10 WILD-TYPE" "PPP1R10 WILD-TYPE" "PPP1R10 WILD-TYPE" 
       TCGA-PZ-A5RE        TCGA-Q3-A5QY        TCGA-US-A779        TCGA-US-A77E 
"PPP1R10 WILD-TYPE" "PPP1R10 WILD-TYPE" "PPP1R10 WILD-TYPE" "PPP1R10 WILD-TYPE" 
       TCGA-US-A77J 
"PPP1R10 WILD-TYPE" 
       TCGA-F2-6879        TCGA-F2-6880        TCGA-F2-7273        TCGA-F2-7276 
"PPP1R10 WILD-TYPE"   "PPP1R10 MUTATED" "PPP1R10 WILD-TYPE" "PPP1R10 WILD-TYPE" 
       TCGA-F2-A44G        TCGA-F2-A44H        TCGA-FB-A4P5        TCGA-FB-A4P6 
"PPP1R10 WILD-TYPE"   "PPP1R10 MUTATED" "PPP1R10 WILD-TYPE" "PPP1R10 WILD-TYPE" 
       TCGA-FB-A545        TCGA-FB-A5VM        TCGA-FB-A78T        TCGA-FB-A7DR 
"PPP1R10 WILD-TYPE" "PPP1R10 WILD-TYPE" "PPP1R10 WILD-TYPE" "PPP1R10 WILD-TYPE" 
       TCGA-FZ-5920        TCGA-FZ-5922        TCGA-FZ-5923        TCGA-H6-8124 
"PPP1R10 WILD-TYPE" "PPP1R10 WILD-TYPE" "PPP1R10 WILD-TYPE" "PPP1R10 WILD-TYPE" 
       TCGA-H6-A45N        TCGA-H8-A6C1        TCGA-HZ-7289        TCGA-HZ-7918 
"PPP1R10 WILD-TYPE" "PPP1R10 WILD-TYPE" "PPP1R10 WILD-TYPE" "PPP1R10 WILD-TYPE" 
       TCGA-HZ-7919        TCGA-HZ-7922        TCGA-HZ-7923        TCGA-HZ-7924 
"PPP1R10 WILD-TYPE" "PPP1R10 WILD-TYPE"   "PPP1R10 MUTATED" "PPP1R10 WILD-TYPE" 
       TCGA-HZ-7925        TCGA-HZ-7926        TCGA-HZ-8001        TCGA-HZ-8002 
"PPP1R10 WILD-TYPE" "PPP1R10 WILD-TYPE" "PPP1R10 WILD-TYPE" "PPP1R10 WILD-TYPE" 
       TCGA-HZ-8003        TCGA-HZ-8005        TCGA-HZ-8315        TCGA-HZ-8317 
  "PPP1R10 MUTATED" "PPP1R10 WILD-TYPE" "PPP1R10 WILD-TYPE" "PPP1R10 WILD-TYPE" 
       TCGA-HZ-8636        TCGA-HZ-8638        TCGA-HZ-A49G        TCGA-HZ-A49H 
"PPP1R10 WILD-TYPE" "PPP1R10 WILD-TYPE"   "PPP1R10 MUTATED" "PPP1R10 WILD-TYPE" 
       TCGA-HZ-A4BH        TCGA-HZ-A4BK        TCGA-IB-7644        TCGA-IB-7645 
"PPP1R10 WILD-TYPE"   "PPP1R10 MUTATED" "PPP1R10 WILD-TYPE" "PPP1R10 WILD-TYPE" 
       TCGA-IB-7646        TCGA-IB-7647        TCGA-IB-7649        TCGA-IB-7651 
  "PPP1R10 MUTATED" "PPP1R10 WILD-TYPE" "PPP1R10 WILD-TYPE" "PPP1R10 WILD-TYPE" 
       TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-7886        TCGA-IB-7887 
"PPP1R10 WILD-TYPE" "PPP1R10 WILD-TYPE" "PPP1R10 WILD-TYPE" "PPP1R10 WILD-TYPE" 
       TCGA-IB-7888        TCGA-IB-7889        TCGA-IB-7890        TCGA-IB-7891 
  "PPP1R10 MUTATED" "PPP1R10 WILD-TYPE" "PPP1R10 WILD-TYPE" "PPP1R10 WILD-TYPE" 
       TCGA-IB-7893        TCGA-IB-7897        TCGA-IB-8126        TCGA-IB-8127 
  "PPP1R10 MUTATED"   "PPP1R10 MUTATED" "PPP1R10 WILD-TYPE" "PPP1R10 WILD-TYPE" 
       TCGA-IB-A5SO        TCGA-IB-A5SP        TCGA-IB-A5SQ        TCGA-IB-A5SS 
"PPP1R10 WILD-TYPE" "PPP1R10 WILD-TYPE" "PPP1R10 WILD-TYPE" "PPP1R10 WILD-TYPE" 
       TCGA-IB-A5ST        TCGA-IB-A6UG        TCGA-LB-A7SX        TCGA-OE-A75W 
"PPP1R10 WILD-TYPE" "PPP1R10 WILD-TYPE" "PPP1R10 WILD-TYPE" "PPP1R10 WILD-TYPE" 
       TCGA-PZ-A5RE        TCGA-Q3-A5QY        TCGA-US-A779        TCGA-US-A77E 
"PPP1R10 WILD-TYPE" "PPP1R10 WILD-TYPE" "PPP1R10 WILD-TYPE" "PPP1R10 WILD-TYPE" 
       TCGA-US-A77J 
"PPP1R10 WILD-TYPE" 
[1] "hr=" "1.2"
D185V2, continuous
                   vv
clus                STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  PPP1R10 MUTATED          0        0         4         6         0        0
  PPP1R10 WILD-TYPE        1        4         7        45         2        3
D185V3, multiclass
                   vv
clus                T1+T2 T3+T4
  PPP1R10 MUTATED       1     9
  PPP1R10 WILD-TYPE     5    57
D185V4, multiclass
       clus
vv      PPP1R10 MUTATED PPP1R10 WILD-TYPE
  T1+T2               1                 5
  T3+T4               9                57
D185V5, binary
                   cls
clus                 0  1
  PPP1R10 MUTATED    4  6
  PPP1R10 WILD-TYPE 13 48
[1] "tbl2"
                   cls
clus                [,1] [,2]
  PPP1R10 MUTATED      4    6
  PPP1R10 WILD-TYPE   13   48
   clus
vv  PPP1R10 MUTATED PPP1R10 WILD-TYPE
  0               4                13
  1               6                48
                   vv
clus                M0 M1 MX
  PPP1R10 MUTATED    6  0  4
  PPP1R10 WILD-TYPE 33  3 26
D185V6, multiclass
    clus
vv   PPP1R10 MUTATED PPP1R10 WILD-TYPE
  M0               6                33
  M1               0                 3
  MX               4                26
D185V7, binary
                   cls
clus                 0  1
  PPP1R10 MUTATED    4  6
  PPP1R10 WILD-TYPE 32 30
[1] "tbl2"
                   cls
clus                [,1] [,2]
  PPP1R10 MUTATED      4    6
  PPP1R10 WILD-TYPE   32   30
        clus
vv       PPP1R10 MUTATED PPP1R10 WILD-TYPE
  FEMALE               4                32
  MALE                 6                30
                   vv
clus                PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  PPP1R10 MUTATED                                     9
  PPP1R10 WILD-TYPE                                  56
                   vv
clus                PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  PPP1R10 MUTATED                                       1
  PPP1R10 WILD-TYPE                                     3
                   vv
clus                PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  PPP1R10 MUTATED                                                  0
  PPP1R10 WILD-TYPE                                                2
D185V8, multiclass
                                                  clus
vv                                                 PPP1R10 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                            9
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                          1
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA               0
                                                  clus
vv                                                 PPP1R10 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                             56
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                            3
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                 2
D185V9, continuous
[1] "Remove cluster labels:" "PPP1R10 MUTATED"       
clus
  PPP1R10 MUTATED PPP1R10 WILD-TYPE 
                1                21 
       TCGA-FB-A4P5        TCGA-FB-A4P6        TCGA-FB-A5VM        TCGA-FB-A78T 
"PPP1R10 WILD-TYPE" "PPP1R10 WILD-TYPE" "PPP1R10 WILD-TYPE" "PPP1R10 WILD-TYPE" 
       TCGA-FB-A7DR        TCGA-H6-8124        TCGA-H6-A45N        TCGA-H8-A6C1 
"PPP1R10 WILD-TYPE" "PPP1R10 WILD-TYPE" "PPP1R10 WILD-TYPE" "PPP1R10 WILD-TYPE" 
       TCGA-IB-7644        TCGA-IB-7649        TCGA-IB-7651        TCGA-IB-7885 
"PPP1R10 WILD-TYPE" "PPP1R10 WILD-TYPE" "PPP1R10 WILD-TYPE" "PPP1R10 WILD-TYPE" 
       TCGA-IB-7886        TCGA-IB-7887        TCGA-IB-7891        TCGA-IB-8126 
"PPP1R10 WILD-TYPE" "PPP1R10 WILD-TYPE" "PPP1R10 WILD-TYPE" "PPP1R10 WILD-TYPE" 
       TCGA-IB-8127        TCGA-IB-A5SS        TCGA-IB-A6UG        TCGA-LB-A7SX 
"PPP1R10 WILD-TYPE" "PPP1R10 WILD-TYPE" "PPP1R10 WILD-TYPE" "PPP1R10 WILD-TYPE" 
       TCGA-OE-A75W 
"PPP1R10 WILD-TYPE" 
D185V10, continuous
                   vv
clus                R0 R1 RX
  PPP1R10 MUTATED    7  3  0
  PPP1R10 WILD-TYPE 35 21  2
D185V11, multiclass
    clus
vv   PPP1R10 MUTATED PPP1R10 WILD-TYPE
  R0               7                35
  R1               3                21
  RX               0                 2
D185V12, continuous

Clustering(186) Variable = TIMM50 MUTATION ANALYSIS
D186V1, survival
                  sevent
clus2               0  1
  TIMM50 MUTATED    4  3
  TIMM50 WILD-TYPE 36 26
  TIMM50 MUTATED TIMM50 WILD-TYPE 
               7               62 
  TIMM50 MUTATED TIMM50 WILD-TYPE 
               3               26 
$`TIMM50 MUTATED`
TCGA-F2-A44H TCGA-HZ-8317 TCGA-HZ-8638 TCGA-IB-7651 TCGA-IB-7652 TCGA-IB-7893 
       19.27         0.53         2.99        19.82        15.65         3.85 
TCGA-IB-7897 
       15.98 

$`TIMM50 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-FB-A4P5 
       10.98         9.70        11.84         7.10         5.03         0.13 
TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR TCGA-FZ-5920 
       11.93        12.66         2.47         0.03         5.46         2.01 
TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7289 
       36.20        20.81        12.89         7.66        13.02         7.89 
TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 
        0.92         0.66         0.13         0.26        12.13        11.87 
TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 
        0.26         0.62         0.79         0.69         3.95         0.92 
TCGA-HZ-8636 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 
        0.16         0.76         0.95         6.38         1.51        11.41 
TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7885 TCGA-IB-7886 
       49.38         4.77        21.90        15.35        27.98         4.04 
TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-8126 
        3.62        43.79        15.81        19.66        16.04         0.56 
TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST 
       17.16        10.82         9.86         7.20        15.12         0.26 
TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 
        1.35         4.18         3.62         8.12        13.68        16.80 
TCGA-US-A77E TCGA-US-A77J 
       14.14        18.67 

  TIMM50 MUTATED TIMM50 WILD-TYPE 
            0.53             0.03 
  TIMM50 MUTATED TIMM50 WILD-TYPE 
           19.82            49.38 
  TIMM50 MUTATED TIMM50 WILD-TYPE 
           15.65             7.43 
[1] "0.5 - 19.8 (15.7)" "0.0 - 49.4 (7.4)" 
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
"TIMM50 WILD-TYPE" "TIMM50 WILD-TYPE" "TIMM50 WILD-TYPE" "TIMM50 WILD-TYPE" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"TIMM50 WILD-TYPE"   "TIMM50 MUTATED" "TIMM50 WILD-TYPE" "TIMM50 WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
"TIMM50 WILD-TYPE" "TIMM50 WILD-TYPE" "TIMM50 WILD-TYPE" "TIMM50 WILD-TYPE" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"TIMM50 WILD-TYPE" "TIMM50 WILD-TYPE" "TIMM50 WILD-TYPE" "TIMM50 WILD-TYPE" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
"TIMM50 WILD-TYPE" "TIMM50 WILD-TYPE" "TIMM50 WILD-TYPE" "TIMM50 WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
"TIMM50 WILD-TYPE" "TIMM50 WILD-TYPE" "TIMM50 WILD-TYPE" "TIMM50 WILD-TYPE" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"TIMM50 WILD-TYPE" "TIMM50 WILD-TYPE" "TIMM50 WILD-TYPE" "TIMM50 WILD-TYPE" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
"TIMM50 WILD-TYPE" "TIMM50 WILD-TYPE" "TIMM50 WILD-TYPE"   "TIMM50 MUTATED" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
"TIMM50 WILD-TYPE"   "TIMM50 MUTATED" "TIMM50 WILD-TYPE" "TIMM50 WILD-TYPE" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
"TIMM50 WILD-TYPE" "TIMM50 WILD-TYPE" "TIMM50 WILD-TYPE" "TIMM50 WILD-TYPE" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
"TIMM50 WILD-TYPE" "TIMM50 WILD-TYPE" "TIMM50 WILD-TYPE"   "TIMM50 MUTATED" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
  "TIMM50 MUTATED" "TIMM50 WILD-TYPE" "TIMM50 WILD-TYPE" "TIMM50 WILD-TYPE" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
"TIMM50 WILD-TYPE" "TIMM50 WILD-TYPE" "TIMM50 WILD-TYPE" "TIMM50 WILD-TYPE" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
  "TIMM50 MUTATED"   "TIMM50 MUTATED" "TIMM50 WILD-TYPE" "TIMM50 WILD-TYPE" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"TIMM50 WILD-TYPE" "TIMM50 WILD-TYPE" "TIMM50 WILD-TYPE" "TIMM50 WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"TIMM50 WILD-TYPE" "TIMM50 WILD-TYPE" "TIMM50 WILD-TYPE" "TIMM50 WILD-TYPE" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
"TIMM50 WILD-TYPE" "TIMM50 WILD-TYPE" "TIMM50 WILD-TYPE" "TIMM50 WILD-TYPE" 
      TCGA-US-A77J 
"TIMM50 WILD-TYPE" 
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
"TIMM50 WILD-TYPE" "TIMM50 WILD-TYPE" "TIMM50 WILD-TYPE" "TIMM50 WILD-TYPE" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"TIMM50 WILD-TYPE"   "TIMM50 MUTATED" "TIMM50 WILD-TYPE" "TIMM50 WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
"TIMM50 WILD-TYPE" "TIMM50 WILD-TYPE" "TIMM50 WILD-TYPE" "TIMM50 WILD-TYPE" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"TIMM50 WILD-TYPE" "TIMM50 WILD-TYPE" "TIMM50 WILD-TYPE" "TIMM50 WILD-TYPE" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
"TIMM50 WILD-TYPE" "TIMM50 WILD-TYPE" "TIMM50 WILD-TYPE" "TIMM50 WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
"TIMM50 WILD-TYPE" "TIMM50 WILD-TYPE" "TIMM50 WILD-TYPE" "TIMM50 WILD-TYPE" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"TIMM50 WILD-TYPE" "TIMM50 WILD-TYPE" "TIMM50 WILD-TYPE" "TIMM50 WILD-TYPE" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
"TIMM50 WILD-TYPE" "TIMM50 WILD-TYPE" "TIMM50 WILD-TYPE"   "TIMM50 MUTATED" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
"TIMM50 WILD-TYPE"   "TIMM50 MUTATED" "TIMM50 WILD-TYPE" "TIMM50 WILD-TYPE" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
"TIMM50 WILD-TYPE" "TIMM50 WILD-TYPE" "TIMM50 WILD-TYPE" "TIMM50 WILD-TYPE" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
"TIMM50 WILD-TYPE" "TIMM50 WILD-TYPE" "TIMM50 WILD-TYPE"   "TIMM50 MUTATED" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
  "TIMM50 MUTATED" "TIMM50 WILD-TYPE" "TIMM50 WILD-TYPE" "TIMM50 WILD-TYPE" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
"TIMM50 WILD-TYPE" "TIMM50 WILD-TYPE" "TIMM50 WILD-TYPE" "TIMM50 WILD-TYPE" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
  "TIMM50 MUTATED"   "TIMM50 MUTATED" "TIMM50 WILD-TYPE" "TIMM50 WILD-TYPE" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"TIMM50 WILD-TYPE" "TIMM50 WILD-TYPE" "TIMM50 WILD-TYPE" "TIMM50 WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"TIMM50 WILD-TYPE" "TIMM50 WILD-TYPE" "TIMM50 WILD-TYPE" "TIMM50 WILD-TYPE" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
"TIMM50 WILD-TYPE" "TIMM50 WILD-TYPE" "TIMM50 WILD-TYPE" "TIMM50 WILD-TYPE" 
      TCGA-US-A77J 
"TIMM50 WILD-TYPE" 
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
"TIMM50 WILD-TYPE" "TIMM50 WILD-TYPE" "TIMM50 WILD-TYPE" "TIMM50 WILD-TYPE" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"TIMM50 WILD-TYPE"   "TIMM50 MUTATED" "TIMM50 WILD-TYPE" "TIMM50 WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
"TIMM50 WILD-TYPE" "TIMM50 WILD-TYPE" "TIMM50 WILD-TYPE" "TIMM50 WILD-TYPE" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"TIMM50 WILD-TYPE" "TIMM50 WILD-TYPE" "TIMM50 WILD-TYPE" "TIMM50 WILD-TYPE" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
"TIMM50 WILD-TYPE" "TIMM50 WILD-TYPE" "TIMM50 WILD-TYPE" "TIMM50 WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
"TIMM50 WILD-TYPE" "TIMM50 WILD-TYPE" "TIMM50 WILD-TYPE" "TIMM50 WILD-TYPE" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"TIMM50 WILD-TYPE" "TIMM50 WILD-TYPE" "TIMM50 WILD-TYPE" "TIMM50 WILD-TYPE" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
"TIMM50 WILD-TYPE" "TIMM50 WILD-TYPE" "TIMM50 WILD-TYPE"   "TIMM50 MUTATED" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
"TIMM50 WILD-TYPE"   "TIMM50 MUTATED" "TIMM50 WILD-TYPE" "TIMM50 WILD-TYPE" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
"TIMM50 WILD-TYPE" "TIMM50 WILD-TYPE" "TIMM50 WILD-TYPE" "TIMM50 WILD-TYPE" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
"TIMM50 WILD-TYPE" "TIMM50 WILD-TYPE" "TIMM50 WILD-TYPE"   "TIMM50 MUTATED" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
  "TIMM50 MUTATED" "TIMM50 WILD-TYPE" "TIMM50 WILD-TYPE" "TIMM50 WILD-TYPE" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
"TIMM50 WILD-TYPE" "TIMM50 WILD-TYPE" "TIMM50 WILD-TYPE" "TIMM50 WILD-TYPE" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
  "TIMM50 MUTATED"   "TIMM50 MUTATED" "TIMM50 WILD-TYPE" "TIMM50 WILD-TYPE" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"TIMM50 WILD-TYPE" "TIMM50 WILD-TYPE" "TIMM50 WILD-TYPE" "TIMM50 WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"TIMM50 WILD-TYPE" "TIMM50 WILD-TYPE" "TIMM50 WILD-TYPE" "TIMM50 WILD-TYPE" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
"TIMM50 WILD-TYPE" "TIMM50 WILD-TYPE" "TIMM50 WILD-TYPE" "TIMM50 WILD-TYPE" 
      TCGA-US-A77J 
"TIMM50 WILD-TYPE" 
[1] "hr=" "1.2"
D186V2, continuous
                  vv
clus               STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  TIMM50 MUTATED          1        0         2         4         0        0
  TIMM50 WILD-TYPE        0        4         9        47         2        3
D186V3, multiclass
                  vv
clus               T1+T2 T3+T4
  TIMM50 MUTATED       1     6
  TIMM50 WILD-TYPE     5    60
D186V4, multiclass
       clus
vv      TIMM50 MUTATED TIMM50 WILD-TYPE
  T1+T2              1                5
  T3+T4              6               60
D186V5, binary
                  cls
clus                0  1
  TIMM50 MUTATED    3  4
  TIMM50 WILD-TYPE 14 50
[1] "tbl2"
                  cls
clus               [,1] [,2]
  TIMM50 MUTATED      3    4
  TIMM50 WILD-TYPE   14   50
   clus
vv  TIMM50 MUTATED TIMM50 WILD-TYPE
  0              3               14
  1              4               50
                  vv
clus               M0 M1 MX
  TIMM50 MUTATED    5  0  2
  TIMM50 WILD-TYPE 34  3 28
D186V6, multiclass
    clus
vv   TIMM50 MUTATED TIMM50 WILD-TYPE
  M0              5               34
  M1              0                3
  MX              2               28
D186V7, binary
                  cls
clus                0  1
  TIMM50 MUTATED    5  2
  TIMM50 WILD-TYPE 31 34
[1] "tbl2"
                  cls
clus               [,1] [,2]
  TIMM50 MUTATED      5    2
  TIMM50 WILD-TYPE   31   34
        clus
vv       TIMM50 MUTATED TIMM50 WILD-TYPE
  FEMALE              5               31
  MALE                2               34
                  vv
clus               PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  TIMM50 MUTATED                                     6
  TIMM50 WILD-TYPE                                  59
                  vv
clus               PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  TIMM50 MUTATED                                       0
  TIMM50 WILD-TYPE                                     4
                  vv
clus               PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  TIMM50 MUTATED                                                  1
  TIMM50 WILD-TYPE                                                1
D186V8, multiclass
                                                  clus
vv                                                 TIMM50 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                           6
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                         0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA              1
                                                  clus
vv                                                 TIMM50 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                            59
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                           4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                1
D186V9, continuous
[1] "Remove cluster labels:" "TIMM50 MUTATED"        
clus
  TIMM50 MUTATED TIMM50 WILD-TYPE 
               1               21 
      TCGA-F2-6880       TCGA-FB-A4P5       TCGA-FB-A4P6       TCGA-FB-A5VM 
"TIMM50 WILD-TYPE" "TIMM50 WILD-TYPE" "TIMM50 WILD-TYPE" "TIMM50 WILD-TYPE" 
      TCGA-FB-A78T       TCGA-FB-A7DR       TCGA-H6-8124       TCGA-H6-A45N 
"TIMM50 WILD-TYPE" "TIMM50 WILD-TYPE" "TIMM50 WILD-TYPE" "TIMM50 WILD-TYPE" 
      TCGA-H8-A6C1       TCGA-IB-7644       TCGA-IB-7649       TCGA-IB-7885 
"TIMM50 WILD-TYPE" "TIMM50 WILD-TYPE" "TIMM50 WILD-TYPE" "TIMM50 WILD-TYPE" 
      TCGA-IB-7886       TCGA-IB-7887       TCGA-IB-7891       TCGA-IB-8126 
"TIMM50 WILD-TYPE" "TIMM50 WILD-TYPE" "TIMM50 WILD-TYPE" "TIMM50 WILD-TYPE" 
      TCGA-IB-8127       TCGA-IB-A5SS       TCGA-IB-A6UG       TCGA-LB-A7SX 
"TIMM50 WILD-TYPE" "TIMM50 WILD-TYPE" "TIMM50 WILD-TYPE" "TIMM50 WILD-TYPE" 
      TCGA-OE-A75W 
"TIMM50 WILD-TYPE" 
D186V10, continuous
[1] "Remove cluster labels:" "TIMM50 MUTATED"        
clus
  TIMM50 MUTATED TIMM50 WILD-TYPE 
               1               18 
      TCGA-FB-A4P5       TCGA-FB-A4P6       TCGA-FB-A5VM       TCGA-FB-A78T 
"TIMM50 WILD-TYPE" "TIMM50 WILD-TYPE" "TIMM50 WILD-TYPE" "TIMM50 WILD-TYPE" 
      TCGA-FB-A7DR       TCGA-H6-8124       TCGA-H8-A6C1       TCGA-IB-7644 
"TIMM50 WILD-TYPE" "TIMM50 WILD-TYPE" "TIMM50 WILD-TYPE" "TIMM50 WILD-TYPE" 
      TCGA-IB-7649       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7891 
"TIMM50 WILD-TYPE" "TIMM50 WILD-TYPE" "TIMM50 WILD-TYPE" "TIMM50 WILD-TYPE" 
      TCGA-IB-8126       TCGA-IB-8127       TCGA-IB-A5SS       TCGA-IB-A6UG 
"TIMM50 WILD-TYPE" "TIMM50 WILD-TYPE" "TIMM50 WILD-TYPE" "TIMM50 WILD-TYPE" 
      TCGA-LB-A7SX       TCGA-OE-A75W 
"TIMM50 WILD-TYPE" "TIMM50 WILD-TYPE" 
                  vv
clus               R0 R1 RX
  TIMM50 MUTATED    5  2  0
  TIMM50 WILD-TYPE 37 22  2
D186V11, multiclass
    clus
vv   TIMM50 MUTATED TIMM50 WILD-TYPE
  R0              5               37
  R1              2               22
  RX              0                2
D186V12, continuous

Clustering(187) Variable = TMED10 MUTATION ANALYSIS
D187V1, survival
                  sevent
clus2               0  1
  TMED10 MUTATED    2  2
  TMED10 WILD-TYPE 38 27
  TMED10 MUTATED TMED10 WILD-TYPE 
               4               65 
  TMED10 MUTATED TMED10 WILD-TYPE 
               2               27 
$`TMED10 MUTATED`
TCGA-HZ-7924 TCGA-HZ-7926 TCGA-IB-7651 TCGA-IB-7897 
       12.13         0.26        19.82        15.98 

$`TMED10 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P5 TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR 
        0.13        11.93        12.66         2.47         0.03         5.46 
TCGA-FZ-5920 TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 
        2.01        36.20        20.81        12.89         7.66        13.02 
TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7925 
        7.89         0.92         0.66         0.13         0.26        11.87 
TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 
        0.62         0.79         0.69         3.95         0.92         0.53 
TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK 
        0.16         2.99         0.76         0.95         6.38         1.51 
TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7652 
       11.41        49.38         4.77        21.90        15.35        15.65 
TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 
       27.98         4.04         3.62        43.79        15.81        19.66 
TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP 
       16.04         3.85         0.56        17.16        10.82         9.86 
TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W 
        7.20        15.12         0.26         1.35         4.18         3.62 
TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
        8.12        13.68        16.80        14.14        18.67 

  TMED10 MUTATED TMED10 WILD-TYPE 
            0.26             0.03 
  TMED10 MUTATED TMED10 WILD-TYPE 
           19.82            49.38 
  TMED10 MUTATED TMED10 WILD-TYPE 
          14.055            7.200 
[1] "0.3 - 19.8 (14.1)" "0.0 - 49.4 (7.2)" 
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
"TMED10 WILD-TYPE" "TMED10 WILD-TYPE" "TMED10 WILD-TYPE" "TMED10 WILD-TYPE" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"TMED10 WILD-TYPE" "TMED10 WILD-TYPE" "TMED10 WILD-TYPE" "TMED10 WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
"TMED10 WILD-TYPE" "TMED10 WILD-TYPE" "TMED10 WILD-TYPE" "TMED10 WILD-TYPE" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"TMED10 WILD-TYPE" "TMED10 WILD-TYPE" "TMED10 WILD-TYPE" "TMED10 WILD-TYPE" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
"TMED10 WILD-TYPE" "TMED10 WILD-TYPE" "TMED10 WILD-TYPE" "TMED10 WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
"TMED10 WILD-TYPE" "TMED10 WILD-TYPE" "TMED10 WILD-TYPE"   "TMED10 MUTATED" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"TMED10 WILD-TYPE"   "TMED10 MUTATED" "TMED10 WILD-TYPE" "TMED10 WILD-TYPE" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
"TMED10 WILD-TYPE" "TMED10 WILD-TYPE" "TMED10 WILD-TYPE" "TMED10 WILD-TYPE" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
"TMED10 WILD-TYPE" "TMED10 WILD-TYPE" "TMED10 WILD-TYPE" "TMED10 WILD-TYPE" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
"TMED10 WILD-TYPE" "TMED10 WILD-TYPE" "TMED10 WILD-TYPE" "TMED10 WILD-TYPE" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
"TMED10 WILD-TYPE" "TMED10 WILD-TYPE" "TMED10 WILD-TYPE"   "TMED10 MUTATED" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
"TMED10 WILD-TYPE" "TMED10 WILD-TYPE" "TMED10 WILD-TYPE" "TMED10 WILD-TYPE" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
"TMED10 WILD-TYPE" "TMED10 WILD-TYPE" "TMED10 WILD-TYPE" "TMED10 WILD-TYPE" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
"TMED10 WILD-TYPE"   "TMED10 MUTATED" "TMED10 WILD-TYPE" "TMED10 WILD-TYPE" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"TMED10 WILD-TYPE" "TMED10 WILD-TYPE" "TMED10 WILD-TYPE" "TMED10 WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"TMED10 WILD-TYPE" "TMED10 WILD-TYPE" "TMED10 WILD-TYPE" "TMED10 WILD-TYPE" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
"TMED10 WILD-TYPE" "TMED10 WILD-TYPE" "TMED10 WILD-TYPE" "TMED10 WILD-TYPE" 
      TCGA-US-A77J 
"TMED10 WILD-TYPE" 
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
"TMED10 WILD-TYPE" "TMED10 WILD-TYPE" "TMED10 WILD-TYPE" "TMED10 WILD-TYPE" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"TMED10 WILD-TYPE" "TMED10 WILD-TYPE" "TMED10 WILD-TYPE" "TMED10 WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
"TMED10 WILD-TYPE" "TMED10 WILD-TYPE" "TMED10 WILD-TYPE" "TMED10 WILD-TYPE" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"TMED10 WILD-TYPE" "TMED10 WILD-TYPE" "TMED10 WILD-TYPE" "TMED10 WILD-TYPE" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
"TMED10 WILD-TYPE" "TMED10 WILD-TYPE" "TMED10 WILD-TYPE" "TMED10 WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
"TMED10 WILD-TYPE" "TMED10 WILD-TYPE" "TMED10 WILD-TYPE"   "TMED10 MUTATED" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"TMED10 WILD-TYPE"   "TMED10 MUTATED" "TMED10 WILD-TYPE" "TMED10 WILD-TYPE" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
"TMED10 WILD-TYPE" "TMED10 WILD-TYPE" "TMED10 WILD-TYPE" "TMED10 WILD-TYPE" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
"TMED10 WILD-TYPE" "TMED10 WILD-TYPE" "TMED10 WILD-TYPE" "TMED10 WILD-TYPE" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
"TMED10 WILD-TYPE" "TMED10 WILD-TYPE" "TMED10 WILD-TYPE" "TMED10 WILD-TYPE" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
"TMED10 WILD-TYPE" "TMED10 WILD-TYPE" "TMED10 WILD-TYPE"   "TMED10 MUTATED" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
"TMED10 WILD-TYPE" "TMED10 WILD-TYPE" "TMED10 WILD-TYPE" "TMED10 WILD-TYPE" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
"TMED10 WILD-TYPE" "TMED10 WILD-TYPE" "TMED10 WILD-TYPE" "TMED10 WILD-TYPE" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
"TMED10 WILD-TYPE"   "TMED10 MUTATED" "TMED10 WILD-TYPE" "TMED10 WILD-TYPE" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"TMED10 WILD-TYPE" "TMED10 WILD-TYPE" "TMED10 WILD-TYPE" "TMED10 WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"TMED10 WILD-TYPE" "TMED10 WILD-TYPE" "TMED10 WILD-TYPE" "TMED10 WILD-TYPE" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
"TMED10 WILD-TYPE" "TMED10 WILD-TYPE" "TMED10 WILD-TYPE" "TMED10 WILD-TYPE" 
      TCGA-US-A77J 
"TMED10 WILD-TYPE" 
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
"TMED10 WILD-TYPE" "TMED10 WILD-TYPE" "TMED10 WILD-TYPE" "TMED10 WILD-TYPE" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"TMED10 WILD-TYPE" "TMED10 WILD-TYPE" "TMED10 WILD-TYPE" "TMED10 WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
"TMED10 WILD-TYPE" "TMED10 WILD-TYPE" "TMED10 WILD-TYPE" "TMED10 WILD-TYPE" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"TMED10 WILD-TYPE" "TMED10 WILD-TYPE" "TMED10 WILD-TYPE" "TMED10 WILD-TYPE" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
"TMED10 WILD-TYPE" "TMED10 WILD-TYPE" "TMED10 WILD-TYPE" "TMED10 WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
"TMED10 WILD-TYPE" "TMED10 WILD-TYPE" "TMED10 WILD-TYPE"   "TMED10 MUTATED" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"TMED10 WILD-TYPE"   "TMED10 MUTATED" "TMED10 WILD-TYPE" "TMED10 WILD-TYPE" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
"TMED10 WILD-TYPE" "TMED10 WILD-TYPE" "TMED10 WILD-TYPE" "TMED10 WILD-TYPE" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
"TMED10 WILD-TYPE" "TMED10 WILD-TYPE" "TMED10 WILD-TYPE" "TMED10 WILD-TYPE" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
"TMED10 WILD-TYPE" "TMED10 WILD-TYPE" "TMED10 WILD-TYPE" "TMED10 WILD-TYPE" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
"TMED10 WILD-TYPE" "TMED10 WILD-TYPE" "TMED10 WILD-TYPE"   "TMED10 MUTATED" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
"TMED10 WILD-TYPE" "TMED10 WILD-TYPE" "TMED10 WILD-TYPE" "TMED10 WILD-TYPE" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
"TMED10 WILD-TYPE" "TMED10 WILD-TYPE" "TMED10 WILD-TYPE" "TMED10 WILD-TYPE" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
"TMED10 WILD-TYPE"   "TMED10 MUTATED" "TMED10 WILD-TYPE" "TMED10 WILD-TYPE" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"TMED10 WILD-TYPE" "TMED10 WILD-TYPE" "TMED10 WILD-TYPE" "TMED10 WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"TMED10 WILD-TYPE" "TMED10 WILD-TYPE" "TMED10 WILD-TYPE" "TMED10 WILD-TYPE" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
"TMED10 WILD-TYPE" "TMED10 WILD-TYPE" "TMED10 WILD-TYPE" "TMED10 WILD-TYPE" 
      TCGA-US-A77J 
"TMED10 WILD-TYPE" 
[1] "hr=" "1.1"
D187V2, continuous
                  vv
clus               STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  TMED10 MUTATED          0        0         1         3         0        0
  TMED10 WILD-TYPE        1        4        10        48         2        3
D187V3, multiclass
                  vv
clus               T1+T2 T3+T4
  TMED10 MUTATED       0     4
  TMED10 WILD-TYPE     6    62
D187V4, multiclass
       clus
vv      TMED10 MUTATED TMED10 WILD-TYPE
  T1+T2              0                6
  T3+T4              4               62
D187V5, binary
                  cls
clus                0  1
  TMED10 MUTATED    1  3
  TMED10 WILD-TYPE 16 51
[1] "tbl2"
                  cls
clus               [,1] [,2]
  TMED10 MUTATED      1    3
  TMED10 WILD-TYPE   16   51
   clus
vv  TMED10 MUTATED TMED10 WILD-TYPE
  0              1               16
  1              3               51
                  vv
clus               M0 M1 MX
  TMED10 MUTATED    2  0  2
  TMED10 WILD-TYPE 37  3 28
D187V6, multiclass
    clus
vv   TMED10 MUTATED TMED10 WILD-TYPE
  M0              2               37
  M1              0                3
  MX              2               28
D187V7, binary
                  cls
clus                0  1
  TMED10 MUTATED    3  1
  TMED10 WILD-TYPE 33 35
[1] "tbl2"
                  cls
clus               [,1] [,2]
  TMED10 MUTATED      3    1
  TMED10 WILD-TYPE   33   35
        clus
vv       TMED10 MUTATED TMED10 WILD-TYPE
  FEMALE              3               33
  MALE                1               35
                  vv
clus               PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  TMED10 MUTATED                                     4
  TMED10 WILD-TYPE                                  61
                  vv
clus               PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  TMED10 MUTATED                                       0
  TMED10 WILD-TYPE                                     4
                  vv
clus               PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  TMED10 MUTATED                                                  0
  TMED10 WILD-TYPE                                                2
D187V8, multiclass
                                                  clus
vv                                                 TMED10 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                           4
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                         0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA              0
                                                  clus
vv                                                 TMED10 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                            61
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                           4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                2
D187V9, continuous
[1] "Remove cluster labels:" "TMED10 MUTATED"        
clus
  TMED10 MUTATED TMED10 WILD-TYPE 
               1               21 
      TCGA-F2-6880       TCGA-FB-A4P5       TCGA-FB-A4P6       TCGA-FB-A5VM 
"TMED10 WILD-TYPE" "TMED10 WILD-TYPE" "TMED10 WILD-TYPE" "TMED10 WILD-TYPE" 
      TCGA-FB-A78T       TCGA-FB-A7DR       TCGA-H6-8124       TCGA-H6-A45N 
"TMED10 WILD-TYPE" "TMED10 WILD-TYPE" "TMED10 WILD-TYPE" "TMED10 WILD-TYPE" 
      TCGA-H8-A6C1       TCGA-IB-7644       TCGA-IB-7649       TCGA-IB-7885 
"TMED10 WILD-TYPE" "TMED10 WILD-TYPE" "TMED10 WILD-TYPE" "TMED10 WILD-TYPE" 
      TCGA-IB-7886       TCGA-IB-7887       TCGA-IB-7891       TCGA-IB-8126 
"TMED10 WILD-TYPE" "TMED10 WILD-TYPE" "TMED10 WILD-TYPE" "TMED10 WILD-TYPE" 
      TCGA-IB-8127       TCGA-IB-A5SS       TCGA-IB-A6UG       TCGA-LB-A7SX 
"TMED10 WILD-TYPE" "TMED10 WILD-TYPE" "TMED10 WILD-TYPE" "TMED10 WILD-TYPE" 
      TCGA-OE-A75W 
"TMED10 WILD-TYPE" 
D187V10, continuous
[1] "Remove cluster labels:" "TMED10 MUTATED"        
clus
  TMED10 MUTATED TMED10 WILD-TYPE 
               1               18 
      TCGA-FB-A4P5       TCGA-FB-A4P6       TCGA-FB-A5VM       TCGA-FB-A78T 
"TMED10 WILD-TYPE" "TMED10 WILD-TYPE" "TMED10 WILD-TYPE" "TMED10 WILD-TYPE" 
      TCGA-FB-A7DR       TCGA-H6-8124       TCGA-H8-A6C1       TCGA-IB-7644 
"TMED10 WILD-TYPE" "TMED10 WILD-TYPE" "TMED10 WILD-TYPE" "TMED10 WILD-TYPE" 
      TCGA-IB-7649       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7891 
"TMED10 WILD-TYPE" "TMED10 WILD-TYPE" "TMED10 WILD-TYPE" "TMED10 WILD-TYPE" 
      TCGA-IB-8126       TCGA-IB-8127       TCGA-IB-A5SS       TCGA-IB-A6UG 
"TMED10 WILD-TYPE" "TMED10 WILD-TYPE" "TMED10 WILD-TYPE" "TMED10 WILD-TYPE" 
      TCGA-LB-A7SX       TCGA-OE-A75W 
"TMED10 WILD-TYPE" "TMED10 WILD-TYPE" 
                  vv
clus               R0 R1 RX
  TMED10 MUTATED    3  0  1
  TMED10 WILD-TYPE 39 24  1
D187V11, multiclass
    clus
vv   TMED10 MUTATED TMED10 WILD-TYPE
  R0              3               39
  R1              0               24
  RX              1                1
D187V12, continuous

Clustering(188) Variable = YIPF2 MUTATION ANALYSIS
D188V1, survival
                 sevent
clus2              0  1
  YIPF2 MUTATED    4  3
  YIPF2 WILD-TYPE 36 26
  YIPF2 MUTATED YIPF2 WILD-TYPE 
              7              62 
  YIPF2 MUTATED YIPF2 WILD-TYPE 
              3              26 
$`YIPF2 MUTATED`
TCGA-F2-A44H TCGA-FB-A78T TCGA-HZ-8636 TCGA-HZ-A49H TCGA-IB-7651 TCGA-IB-7888 
       19.27         0.03         0.16         0.95        19.82        43.79 
TCGA-US-A779 
       16.80 

$`YIPF2 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-FB-A4P5 
       10.98         9.70        11.84         7.10         5.03         0.13 
TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A7DR TCGA-FZ-5920 TCGA-FZ-5922 
       11.93        12.66         2.47         5.46         2.01        36.20 
TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7289 TCGA-HZ-7918 
       20.81        12.89         7.66        13.02         7.89         0.92 
TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 
        0.66         0.13         0.26        12.13        11.87         0.26 
TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 
        0.62         0.79         0.69         3.95         0.92         0.53 
TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7645 
        2.99         0.76         6.38         1.51        11.41        49.38 
TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7886 
        4.77        21.90        15.35        15.65        27.98         4.04 
TCGA-IB-7887 TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-7897 
        3.62        15.81        19.66        16.04         3.85        15.98 
TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS 
        0.56        17.16        10.82         9.86         7.20        15.12 
TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W TCGA-PZ-A5RE TCGA-Q3-A5QY 
        0.26         1.35         4.18         3.62         8.12        13.68 
TCGA-US-A77E TCGA-US-A77J 
       14.14        18.67 

  YIPF2 MUTATED YIPF2 WILD-TYPE 
           0.03            0.13 
  YIPF2 MUTATED YIPF2 WILD-TYPE 
          43.79           49.38 
  YIPF2 MUTATED YIPF2 WILD-TYPE 
          16.80            7.43 
[1] "0.0 - 43.8 (16.8)" "0.1 - 49.4 (7.4)" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"YIPF2 WILD-TYPE" "YIPF2 WILD-TYPE" "YIPF2 WILD-TYPE" "YIPF2 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"YIPF2 WILD-TYPE"   "YIPF2 MUTATED" "YIPF2 WILD-TYPE" "YIPF2 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"YIPF2 WILD-TYPE" "YIPF2 WILD-TYPE"   "YIPF2 MUTATED" "YIPF2 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"YIPF2 WILD-TYPE" "YIPF2 WILD-TYPE" "YIPF2 WILD-TYPE" "YIPF2 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"YIPF2 WILD-TYPE" "YIPF2 WILD-TYPE" "YIPF2 WILD-TYPE" "YIPF2 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"YIPF2 WILD-TYPE" "YIPF2 WILD-TYPE" "YIPF2 WILD-TYPE" "YIPF2 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"YIPF2 WILD-TYPE" "YIPF2 WILD-TYPE" "YIPF2 WILD-TYPE" "YIPF2 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"YIPF2 WILD-TYPE" "YIPF2 WILD-TYPE" "YIPF2 WILD-TYPE" "YIPF2 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
  "YIPF2 MUTATED" "YIPF2 WILD-TYPE" "YIPF2 WILD-TYPE"   "YIPF2 MUTATED" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"YIPF2 WILD-TYPE" "YIPF2 WILD-TYPE" "YIPF2 WILD-TYPE" "YIPF2 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"YIPF2 WILD-TYPE" "YIPF2 WILD-TYPE" "YIPF2 WILD-TYPE"   "YIPF2 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"YIPF2 WILD-TYPE" "YIPF2 WILD-TYPE" "YIPF2 WILD-TYPE" "YIPF2 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
  "YIPF2 MUTATED" "YIPF2 WILD-TYPE" "YIPF2 WILD-TYPE" "YIPF2 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"YIPF2 WILD-TYPE" "YIPF2 WILD-TYPE" "YIPF2 WILD-TYPE" "YIPF2 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"YIPF2 WILD-TYPE" "YIPF2 WILD-TYPE" "YIPF2 WILD-TYPE" "YIPF2 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"YIPF2 WILD-TYPE" "YIPF2 WILD-TYPE" "YIPF2 WILD-TYPE" "YIPF2 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"YIPF2 WILD-TYPE" "YIPF2 WILD-TYPE"   "YIPF2 MUTATED" "YIPF2 WILD-TYPE" 
     TCGA-US-A77J 
"YIPF2 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"YIPF2 WILD-TYPE" "YIPF2 WILD-TYPE" "YIPF2 WILD-TYPE" "YIPF2 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"YIPF2 WILD-TYPE"   "YIPF2 MUTATED" "YIPF2 WILD-TYPE" "YIPF2 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"YIPF2 WILD-TYPE" "YIPF2 WILD-TYPE"   "YIPF2 MUTATED" "YIPF2 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"YIPF2 WILD-TYPE" "YIPF2 WILD-TYPE" "YIPF2 WILD-TYPE" "YIPF2 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"YIPF2 WILD-TYPE" "YIPF2 WILD-TYPE" "YIPF2 WILD-TYPE" "YIPF2 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"YIPF2 WILD-TYPE" "YIPF2 WILD-TYPE" "YIPF2 WILD-TYPE" "YIPF2 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"YIPF2 WILD-TYPE" "YIPF2 WILD-TYPE" "YIPF2 WILD-TYPE" "YIPF2 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"YIPF2 WILD-TYPE" "YIPF2 WILD-TYPE" "YIPF2 WILD-TYPE" "YIPF2 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
  "YIPF2 MUTATED" "YIPF2 WILD-TYPE" "YIPF2 WILD-TYPE"   "YIPF2 MUTATED" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"YIPF2 WILD-TYPE" "YIPF2 WILD-TYPE" "YIPF2 WILD-TYPE" "YIPF2 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"YIPF2 WILD-TYPE" "YIPF2 WILD-TYPE" "YIPF2 WILD-TYPE"   "YIPF2 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"YIPF2 WILD-TYPE" "YIPF2 WILD-TYPE" "YIPF2 WILD-TYPE" "YIPF2 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
  "YIPF2 MUTATED" "YIPF2 WILD-TYPE" "YIPF2 WILD-TYPE" "YIPF2 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"YIPF2 WILD-TYPE" "YIPF2 WILD-TYPE" "YIPF2 WILD-TYPE" "YIPF2 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"YIPF2 WILD-TYPE" "YIPF2 WILD-TYPE" "YIPF2 WILD-TYPE" "YIPF2 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"YIPF2 WILD-TYPE" "YIPF2 WILD-TYPE" "YIPF2 WILD-TYPE" "YIPF2 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"YIPF2 WILD-TYPE" "YIPF2 WILD-TYPE"   "YIPF2 MUTATED" "YIPF2 WILD-TYPE" 
     TCGA-US-A77J 
"YIPF2 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"YIPF2 WILD-TYPE" "YIPF2 WILD-TYPE" "YIPF2 WILD-TYPE" "YIPF2 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"YIPF2 WILD-TYPE"   "YIPF2 MUTATED" "YIPF2 WILD-TYPE" "YIPF2 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"YIPF2 WILD-TYPE" "YIPF2 WILD-TYPE"   "YIPF2 MUTATED" "YIPF2 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"YIPF2 WILD-TYPE" "YIPF2 WILD-TYPE" "YIPF2 WILD-TYPE" "YIPF2 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"YIPF2 WILD-TYPE" "YIPF2 WILD-TYPE" "YIPF2 WILD-TYPE" "YIPF2 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"YIPF2 WILD-TYPE" "YIPF2 WILD-TYPE" "YIPF2 WILD-TYPE" "YIPF2 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"YIPF2 WILD-TYPE" "YIPF2 WILD-TYPE" "YIPF2 WILD-TYPE" "YIPF2 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"YIPF2 WILD-TYPE" "YIPF2 WILD-TYPE" "YIPF2 WILD-TYPE" "YIPF2 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
  "YIPF2 MUTATED" "YIPF2 WILD-TYPE" "YIPF2 WILD-TYPE"   "YIPF2 MUTATED" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"YIPF2 WILD-TYPE" "YIPF2 WILD-TYPE" "YIPF2 WILD-TYPE" "YIPF2 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"YIPF2 WILD-TYPE" "YIPF2 WILD-TYPE" "YIPF2 WILD-TYPE"   "YIPF2 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"YIPF2 WILD-TYPE" "YIPF2 WILD-TYPE" "YIPF2 WILD-TYPE" "YIPF2 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
  "YIPF2 MUTATED" "YIPF2 WILD-TYPE" "YIPF2 WILD-TYPE" "YIPF2 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"YIPF2 WILD-TYPE" "YIPF2 WILD-TYPE" "YIPF2 WILD-TYPE" "YIPF2 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"YIPF2 WILD-TYPE" "YIPF2 WILD-TYPE" "YIPF2 WILD-TYPE" "YIPF2 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"YIPF2 WILD-TYPE" "YIPF2 WILD-TYPE" "YIPF2 WILD-TYPE" "YIPF2 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"YIPF2 WILD-TYPE" "YIPF2 WILD-TYPE"   "YIPF2 MUTATED" "YIPF2 WILD-TYPE" 
     TCGA-US-A77J 
"YIPF2 WILD-TYPE" 
[1] "hr=" "2"  
D188V2, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  YIPF2 MUTATED          0        0         2         4         0        1
  YIPF2 WILD-TYPE        1        4         9        47         2        2
D188V3, multiclass
                 vv
clus              T1+T2 T3+T4
  YIPF2 MUTATED       0     7
  YIPF2 WILD-TYPE     6    59
D188V4, multiclass
       clus
vv      YIPF2 MUTATED YIPF2 WILD-TYPE
  T1+T2             0               6
  T3+T4             7              59
D188V5, binary
                 cls
clus               0  1
  YIPF2 MUTATED    3  4
  YIPF2 WILD-TYPE 14 50
[1] "tbl2"
                 cls
clus              [,1] [,2]
  YIPF2 MUTATED      3    4
  YIPF2 WILD-TYPE   14   50
   clus
vv  YIPF2 MUTATED YIPF2 WILD-TYPE
  0             3              14
  1             4              50
                 vv
clus              M0 M1 MX
  YIPF2 MUTATED    4  1  2
  YIPF2 WILD-TYPE 35  2 28
D188V6, multiclass
    clus
vv   YIPF2 MUTATED YIPF2 WILD-TYPE
  M0             4              35
  M1             1               2
  MX             2              28
D188V7, binary
                 cls
clus               0  1
  YIPF2 MUTATED    6  1
  YIPF2 WILD-TYPE 30 35
[1] "tbl2"
                 cls
clus              [,1] [,2]
  YIPF2 MUTATED      6    1
  YIPF2 WILD-TYPE   30   35
        clus
vv       YIPF2 MUTATED YIPF2 WILD-TYPE
  FEMALE             6              30
  MALE               1              35
                 vv
clus              PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  YIPF2 MUTATED                                     7
  YIPF2 WILD-TYPE                                  58
                 vv
clus              PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  YIPF2 MUTATED                                       0
  YIPF2 WILD-TYPE                                     4
                 vv
clus              PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  YIPF2 MUTATED                                                  0
  YIPF2 WILD-TYPE                                                2
D188V8, multiclass
                                                  clus
vv                                                 YIPF2 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                          7
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                        0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA             0
                                                  clus
vv                                                 YIPF2 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                           58
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                          4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA               2
D188V9, continuous
[1] "Remove cluster labels:" "YIPF2 MUTATED"         
clus
  YIPF2 MUTATED YIPF2 WILD-TYPE 
              2              20 
     TCGA-F2-6880      TCGA-FB-A4P5      TCGA-FB-A4P6      TCGA-FB-A5VM 
"YIPF2 WILD-TYPE" "YIPF2 WILD-TYPE" "YIPF2 WILD-TYPE" "YIPF2 WILD-TYPE" 
     TCGA-FB-A7DR      TCGA-H6-8124      TCGA-H6-A45N      TCGA-H8-A6C1 
"YIPF2 WILD-TYPE" "YIPF2 WILD-TYPE" "YIPF2 WILD-TYPE" "YIPF2 WILD-TYPE" 
     TCGA-IB-7644      TCGA-IB-7649      TCGA-IB-7885      TCGA-IB-7886 
"YIPF2 WILD-TYPE" "YIPF2 WILD-TYPE" "YIPF2 WILD-TYPE" "YIPF2 WILD-TYPE" 
     TCGA-IB-7887      TCGA-IB-7891      TCGA-IB-8126      TCGA-IB-8127 
"YIPF2 WILD-TYPE" "YIPF2 WILD-TYPE" "YIPF2 WILD-TYPE" "YIPF2 WILD-TYPE" 
     TCGA-IB-A5SS      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"YIPF2 WILD-TYPE" "YIPF2 WILD-TYPE" "YIPF2 WILD-TYPE" "YIPF2 WILD-TYPE" 
D188V10, continuous
[1] "Remove cluster labels:" "YIPF2 MUTATED"         
clus
  YIPF2 MUTATED YIPF2 WILD-TYPE 
              2              17 
     TCGA-FB-A4P5      TCGA-FB-A4P6      TCGA-FB-A5VM      TCGA-FB-A7DR 
"YIPF2 WILD-TYPE" "YIPF2 WILD-TYPE" "YIPF2 WILD-TYPE" "YIPF2 WILD-TYPE" 
     TCGA-H6-8124      TCGA-H8-A6C1      TCGA-IB-7644      TCGA-IB-7649 
"YIPF2 WILD-TYPE" "YIPF2 WILD-TYPE" "YIPF2 WILD-TYPE" "YIPF2 WILD-TYPE" 
     TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7891      TCGA-IB-8126 
"YIPF2 WILD-TYPE" "YIPF2 WILD-TYPE" "YIPF2 WILD-TYPE" "YIPF2 WILD-TYPE" 
     TCGA-IB-8127      TCGA-IB-A5SS      TCGA-IB-A6UG      TCGA-LB-A7SX 
"YIPF2 WILD-TYPE" "YIPF2 WILD-TYPE" "YIPF2 WILD-TYPE" "YIPF2 WILD-TYPE" 
     TCGA-OE-A75W 
"YIPF2 WILD-TYPE" 
                 vv
clus              R0 R1 RX
  YIPF2 MUTATED    6  1  0
  YIPF2 WILD-TYPE 36 23  2
D188V11, multiclass
    clus
vv   YIPF2 MUTATED YIPF2 WILD-TYPE
  R0             6              36
  R1             1              23
  RX             0               2
D188V12, continuous

Clustering(189) Variable = TSC22D1 MUTATION ANALYSIS
D189V1, survival
                   sevent
clus2                0  1
  TSC22D1 MUTATED    3  5
  TSC22D1 WILD-TYPE 37 24
  TSC22D1 MUTATED TSC22D1 WILD-TYPE 
                8                61 
  TSC22D1 MUTATED TSC22D1 WILD-TYPE 
                5                24 
$`TSC22D1 MUTATED`
TCGA-F2-7276 TCGA-FB-A4P6 TCGA-FB-A78T TCGA-HZ-8005 TCGA-HZ-A4BK TCGA-IB-7647 
        7.10        11.93         0.03         3.95         1.51        21.90 
TCGA-IB-7651 TCGA-IB-7889 
       19.82        15.81 

$`TSC22D1 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-A44G TCGA-F2-A44H TCGA-FB-A4P5 
       10.98         9.70        11.84         5.03        19.27         0.13 
TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A7DR TCGA-FZ-5920 TCGA-FZ-5922 TCGA-FZ-5923 
       12.66         2.47         5.46         2.01        36.20        20.81 
TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-7919 
       12.89         7.66        13.02         7.89         0.92         0.66 
TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8001 
        0.13         0.26        12.13        11.87         0.26         0.62 
TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8636 TCGA-HZ-8638 
        0.79         0.69         0.92         0.53         0.16         2.99 
TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7646 
        0.76         0.95         6.38        11.41        49.38         4.77 
TCGA-IB-7649 TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7888 
       15.35        15.65        27.98         4.04         3.62        43.79 
TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-8127 
       19.66        16.04         3.85        15.98         0.56        17.16 
TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG 
       10.82         9.86         7.20        15.12         0.26         1.35 
TCGA-LB-A7SX TCGA-OE-A75W TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E 
        4.18         3.62         8.12        13.68        16.80        14.14 
TCGA-US-A77J 
       18.67 

  TSC22D1 MUTATED TSC22D1 WILD-TYPE 
             0.03              0.13 
  TSC22D1 MUTATED TSC22D1 WILD-TYPE 
            21.90             49.38 
  TSC22D1 MUTATED TSC22D1 WILD-TYPE 
            9.515             7.660 
[1] "0.0 - 21.9 (9.5)" "0.1 - 49.4 (7.7)"
       TCGA-F2-6879        TCGA-F2-6880        TCGA-F2-7273        TCGA-F2-7276 
"TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE"   "TSC22D1 MUTATED" 
       TCGA-F2-A44G        TCGA-F2-A44H        TCGA-FB-A4P5        TCGA-FB-A4P6 
"TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE"   "TSC22D1 MUTATED" 
       TCGA-FB-A545        TCGA-FB-A5VM        TCGA-FB-A78T        TCGA-FB-A7DR 
"TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE"   "TSC22D1 MUTATED" "TSC22D1 WILD-TYPE" 
       TCGA-FZ-5920        TCGA-FZ-5922        TCGA-FZ-5923        TCGA-H6-8124 
"TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" 
       TCGA-H6-A45N        TCGA-H8-A6C1        TCGA-HZ-7289        TCGA-HZ-7918 
"TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" 
       TCGA-HZ-7919        TCGA-HZ-7922        TCGA-HZ-7923        TCGA-HZ-7924 
"TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" 
       TCGA-HZ-7925        TCGA-HZ-7926        TCGA-HZ-8001        TCGA-HZ-8002 
"TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" 
       TCGA-HZ-8003        TCGA-HZ-8005        TCGA-HZ-8315        TCGA-HZ-8317 
"TSC22D1 WILD-TYPE"   "TSC22D1 MUTATED" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" 
       TCGA-HZ-8636        TCGA-HZ-8638        TCGA-HZ-A49G        TCGA-HZ-A49H 
"TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" 
       TCGA-HZ-A4BH        TCGA-HZ-A4BK        TCGA-IB-7644        TCGA-IB-7645 
"TSC22D1 WILD-TYPE"   "TSC22D1 MUTATED" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" 
       TCGA-IB-7646        TCGA-IB-7647        TCGA-IB-7649        TCGA-IB-7651 
"TSC22D1 WILD-TYPE"   "TSC22D1 MUTATED" "TSC22D1 WILD-TYPE"   "TSC22D1 MUTATED" 
       TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-7886        TCGA-IB-7887 
"TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" 
       TCGA-IB-7888        TCGA-IB-7889        TCGA-IB-7890        TCGA-IB-7891 
"TSC22D1 WILD-TYPE"   "TSC22D1 MUTATED" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" 
       TCGA-IB-7893        TCGA-IB-7897        TCGA-IB-8126        TCGA-IB-8127 
"TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" 
       TCGA-IB-A5SO        TCGA-IB-A5SP        TCGA-IB-A5SQ        TCGA-IB-A5SS 
"TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" 
       TCGA-IB-A5ST        TCGA-IB-A6UG        TCGA-LB-A7SX        TCGA-OE-A75W 
"TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" 
       TCGA-PZ-A5RE        TCGA-Q3-A5QY        TCGA-US-A779        TCGA-US-A77E 
"TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" 
       TCGA-US-A77J 
"TSC22D1 WILD-TYPE" 
       TCGA-F2-6879        TCGA-F2-6880        TCGA-F2-7273        TCGA-F2-7276 
"TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE"   "TSC22D1 MUTATED" 
       TCGA-F2-A44G        TCGA-F2-A44H        TCGA-FB-A4P5        TCGA-FB-A4P6 
"TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE"   "TSC22D1 MUTATED" 
       TCGA-FB-A545        TCGA-FB-A5VM        TCGA-FB-A78T        TCGA-FB-A7DR 
"TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE"   "TSC22D1 MUTATED" "TSC22D1 WILD-TYPE" 
       TCGA-FZ-5920        TCGA-FZ-5922        TCGA-FZ-5923        TCGA-H6-8124 
"TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" 
       TCGA-H6-A45N        TCGA-H8-A6C1        TCGA-HZ-7289        TCGA-HZ-7918 
"TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" 
       TCGA-HZ-7919        TCGA-HZ-7922        TCGA-HZ-7923        TCGA-HZ-7924 
"TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" 
       TCGA-HZ-7925        TCGA-HZ-7926        TCGA-HZ-8001        TCGA-HZ-8002 
"TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" 
       TCGA-HZ-8003        TCGA-HZ-8005        TCGA-HZ-8315        TCGA-HZ-8317 
"TSC22D1 WILD-TYPE"   "TSC22D1 MUTATED" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" 
       TCGA-HZ-8636        TCGA-HZ-8638        TCGA-HZ-A49G        TCGA-HZ-A49H 
"TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" 
       TCGA-HZ-A4BH        TCGA-HZ-A4BK        TCGA-IB-7644        TCGA-IB-7645 
"TSC22D1 WILD-TYPE"   "TSC22D1 MUTATED" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" 
       TCGA-IB-7646        TCGA-IB-7647        TCGA-IB-7649        TCGA-IB-7651 
"TSC22D1 WILD-TYPE"   "TSC22D1 MUTATED" "TSC22D1 WILD-TYPE"   "TSC22D1 MUTATED" 
       TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-7886        TCGA-IB-7887 
"TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" 
       TCGA-IB-7888        TCGA-IB-7889        TCGA-IB-7890        TCGA-IB-7891 
"TSC22D1 WILD-TYPE"   "TSC22D1 MUTATED" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" 
       TCGA-IB-7893        TCGA-IB-7897        TCGA-IB-8126        TCGA-IB-8127 
"TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" 
       TCGA-IB-A5SO        TCGA-IB-A5SP        TCGA-IB-A5SQ        TCGA-IB-A5SS 
"TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" 
       TCGA-IB-A5ST        TCGA-IB-A6UG        TCGA-LB-A7SX        TCGA-OE-A75W 
"TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" 
       TCGA-PZ-A5RE        TCGA-Q3-A5QY        TCGA-US-A779        TCGA-US-A77E 
"TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" 
       TCGA-US-A77J 
"TSC22D1 WILD-TYPE" 
       TCGA-F2-6879        TCGA-F2-6880        TCGA-F2-7273        TCGA-F2-7276 
"TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE"   "TSC22D1 MUTATED" 
       TCGA-F2-A44G        TCGA-F2-A44H        TCGA-FB-A4P5        TCGA-FB-A4P6 
"TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE"   "TSC22D1 MUTATED" 
       TCGA-FB-A545        TCGA-FB-A5VM        TCGA-FB-A78T        TCGA-FB-A7DR 
"TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE"   "TSC22D1 MUTATED" "TSC22D1 WILD-TYPE" 
       TCGA-FZ-5920        TCGA-FZ-5922        TCGA-FZ-5923        TCGA-H6-8124 
"TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" 
       TCGA-H6-A45N        TCGA-H8-A6C1        TCGA-HZ-7289        TCGA-HZ-7918 
"TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" 
       TCGA-HZ-7919        TCGA-HZ-7922        TCGA-HZ-7923        TCGA-HZ-7924 
"TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" 
       TCGA-HZ-7925        TCGA-HZ-7926        TCGA-HZ-8001        TCGA-HZ-8002 
"TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" 
       TCGA-HZ-8003        TCGA-HZ-8005        TCGA-HZ-8315        TCGA-HZ-8317 
"TSC22D1 WILD-TYPE"   "TSC22D1 MUTATED" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" 
       TCGA-HZ-8636        TCGA-HZ-8638        TCGA-HZ-A49G        TCGA-HZ-A49H 
"TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" 
       TCGA-HZ-A4BH        TCGA-HZ-A4BK        TCGA-IB-7644        TCGA-IB-7645 
"TSC22D1 WILD-TYPE"   "TSC22D1 MUTATED" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" 
       TCGA-IB-7646        TCGA-IB-7647        TCGA-IB-7649        TCGA-IB-7651 
"TSC22D1 WILD-TYPE"   "TSC22D1 MUTATED" "TSC22D1 WILD-TYPE"   "TSC22D1 MUTATED" 
       TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-7886        TCGA-IB-7887 
"TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" 
       TCGA-IB-7888        TCGA-IB-7889        TCGA-IB-7890        TCGA-IB-7891 
"TSC22D1 WILD-TYPE"   "TSC22D1 MUTATED" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" 
       TCGA-IB-7893        TCGA-IB-7897        TCGA-IB-8126        TCGA-IB-8127 
"TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" 
       TCGA-IB-A5SO        TCGA-IB-A5SP        TCGA-IB-A5SQ        TCGA-IB-A5SS 
"TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" 
       TCGA-IB-A5ST        TCGA-IB-A6UG        TCGA-LB-A7SX        TCGA-OE-A75W 
"TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" 
       TCGA-PZ-A5RE        TCGA-Q3-A5QY        TCGA-US-A779        TCGA-US-A77E 
"TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" 
       TCGA-US-A77J 
"TSC22D1 WILD-TYPE" 
[1] "hr=" "1.3"
D189V2, continuous
                   vv
clus                STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  TSC22D1 MUTATED          0        0         0         8         0        0
  TSC22D1 WILD-TYPE        1        4        11        43         2        3
D189V3, multiclass
                   vv
clus                T1+T2 T3+T4
  TSC22D1 MUTATED       0     8
  TSC22D1 WILD-TYPE     6    58
D189V4, multiclass
       clus
vv      TSC22D1 MUTATED TSC22D1 WILD-TYPE
  T1+T2               0                 6
  T3+T4               8                58
D189V5, binary
                   cls
clus                 0  1
  TSC22D1 MUTATED    0  8
  TSC22D1 WILD-TYPE 17 46
[1] "tbl2"
                   cls
clus                [,1] [,2]
  TSC22D1 MUTATED      0    8
  TSC22D1 WILD-TYPE   17   46
   clus
vv  TSC22D1 MUTATED TSC22D1 WILD-TYPE
  0               0                17
  1               8                46
                   vv
clus                M0 M1 MX
  TSC22D1 MUTATED    5  0  3
  TSC22D1 WILD-TYPE 34  3 27
D189V6, multiclass
    clus
vv   TSC22D1 MUTATED TSC22D1 WILD-TYPE
  M0               5                34
  M1               0                 3
  MX               3                27
D189V7, binary
                   cls
clus                 0  1
  TSC22D1 MUTATED    4  4
  TSC22D1 WILD-TYPE 32 32
[1] "tbl2"
                   cls
clus                [,1] [,2]
  TSC22D1 MUTATED      4    4
  TSC22D1 WILD-TYPE   32   32
        clus
vv       TSC22D1 MUTATED TSC22D1 WILD-TYPE
  FEMALE               4                32
  MALE                 4                32
                   vv
clus                PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  TSC22D1 MUTATED                                     7
  TSC22D1 WILD-TYPE                                  58
                   vv
clus                PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  TSC22D1 MUTATED                                       1
  TSC22D1 WILD-TYPE                                     3
                   vv
clus                PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  TSC22D1 MUTATED                                                  0
  TSC22D1 WILD-TYPE                                                2
D189V8, multiclass
                                                  clus
vv                                                 TSC22D1 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                            7
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                          1
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA               0
                                                  clus
vv                                                 TSC22D1 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                             58
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                            3
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                 2
D189V9, continuous
D189V10, continuous
                   vv
clus                R0 R1 RX
  TSC22D1 MUTATED    4  3  0
  TSC22D1 WILD-TYPE 38 21  2
D189V11, multiclass
    clus
vv   TSC22D1 MUTATED TSC22D1 WILD-TYPE
  R0               4                38
  R1               3                21
  RX               0                 2
D189V12, continuous

Clustering(190) Variable = ARFGAP3 MUTATION ANALYSIS
D190V1, survival
                   sevent
clus2                0  1
  ARFGAP3 MUTATED    2  4
  ARFGAP3 WILD-TYPE 38 25
  ARFGAP3 MUTATED ARFGAP3 WILD-TYPE 
                6                63 
  ARFGAP3 MUTATED ARFGAP3 WILD-TYPE 
                4                25 
$`ARFGAP3 MUTATED`
TCGA-F2-7273 TCGA-FB-A7DR TCGA-HZ-A4BH TCGA-IB-7888 TCGA-IB-7893 TCGA-US-A779 
       11.84         5.46         6.38        43.79         3.85        16.80 

$`ARFGAP3 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H TCGA-FB-A4P5 
       10.98         9.70         7.10         5.03        19.27         0.13 
TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FZ-5920 TCGA-FZ-5922 
       11.93        12.66         2.47         0.03         2.01        36.20 
TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7289 TCGA-HZ-7918 
       20.81        12.89         7.66        13.02         7.89         0.92 
TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 
        0.66         0.13         0.26        12.13        11.87         0.26 
TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 
        0.62         0.79         0.69         3.95         0.92         0.53 
TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BK TCGA-IB-7644 
        0.16         2.99         0.76         0.95         1.51        11.41 
TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7651 TCGA-IB-7652 
       49.38         4.77        21.90        15.35        19.82        15.65 
TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 
       27.98         4.04         3.62        15.81        19.66        16.04 
TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ 
       15.98         0.56        17.16        10.82         9.86         7.20 
TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W TCGA-PZ-A5RE 
       15.12         0.26         1.35         4.18         3.62         8.12 
TCGA-Q3-A5QY TCGA-US-A77E TCGA-US-A77J 
       13.68        14.14        18.67 

  ARFGAP3 MUTATED ARFGAP3 WILD-TYPE 
             3.85              0.03 
  ARFGAP3 MUTATED ARFGAP3 WILD-TYPE 
            43.79             49.38 
  ARFGAP3 MUTATED ARFGAP3 WILD-TYPE 
             9.11              7.66 
[1] "3.9 - 43.8 (9.1)" "0.0 - 49.4 (7.7)"
       TCGA-F2-6879        TCGA-F2-6880        TCGA-F2-7273        TCGA-F2-7276 
"ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE"   "ARFGAP3 MUTATED" "ARFGAP3 WILD-TYPE" 
       TCGA-F2-A44G        TCGA-F2-A44H        TCGA-FB-A4P5        TCGA-FB-A4P6 
"ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE" 
       TCGA-FB-A545        TCGA-FB-A5VM        TCGA-FB-A78T        TCGA-FB-A7DR 
"ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE"   "ARFGAP3 MUTATED" 
       TCGA-FZ-5920        TCGA-FZ-5922        TCGA-FZ-5923        TCGA-H6-8124 
"ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE" 
       TCGA-H6-A45N        TCGA-H8-A6C1        TCGA-HZ-7289        TCGA-HZ-7918 
"ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE" 
       TCGA-HZ-7919        TCGA-HZ-7922        TCGA-HZ-7923        TCGA-HZ-7924 
"ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE" 
       TCGA-HZ-7925        TCGA-HZ-7926        TCGA-HZ-8001        TCGA-HZ-8002 
"ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE" 
       TCGA-HZ-8003        TCGA-HZ-8005        TCGA-HZ-8315        TCGA-HZ-8317 
"ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE" 
       TCGA-HZ-8636        TCGA-HZ-8638        TCGA-HZ-A49G        TCGA-HZ-A49H 
"ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE" 
       TCGA-HZ-A4BH        TCGA-HZ-A4BK        TCGA-IB-7644        TCGA-IB-7645 
  "ARFGAP3 MUTATED" "ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE" 
       TCGA-IB-7646        TCGA-IB-7647        TCGA-IB-7649        TCGA-IB-7651 
"ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE" 
       TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-7886        TCGA-IB-7887 
"ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE" 
       TCGA-IB-7888        TCGA-IB-7889        TCGA-IB-7890        TCGA-IB-7891 
  "ARFGAP3 MUTATED" "ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE" 
       TCGA-IB-7893        TCGA-IB-7897        TCGA-IB-8126        TCGA-IB-8127 
  "ARFGAP3 MUTATED" "ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE" 
       TCGA-IB-A5SO        TCGA-IB-A5SP        TCGA-IB-A5SQ        TCGA-IB-A5SS 
"ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE" 
       TCGA-IB-A5ST        TCGA-IB-A6UG        TCGA-LB-A7SX        TCGA-OE-A75W 
"ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE" 
       TCGA-PZ-A5RE        TCGA-Q3-A5QY        TCGA-US-A779        TCGA-US-A77E 
"ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE"   "ARFGAP3 MUTATED" "ARFGAP3 WILD-TYPE" 
       TCGA-US-A77J 
"ARFGAP3 WILD-TYPE" 
       TCGA-F2-6879        TCGA-F2-6880        TCGA-F2-7273        TCGA-F2-7276 
"ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE"   "ARFGAP3 MUTATED" "ARFGAP3 WILD-TYPE" 
       TCGA-F2-A44G        TCGA-F2-A44H        TCGA-FB-A4P5        TCGA-FB-A4P6 
"ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE" 
       TCGA-FB-A545        TCGA-FB-A5VM        TCGA-FB-A78T        TCGA-FB-A7DR 
"ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE"   "ARFGAP3 MUTATED" 
       TCGA-FZ-5920        TCGA-FZ-5922        TCGA-FZ-5923        TCGA-H6-8124 
"ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE" 
       TCGA-H6-A45N        TCGA-H8-A6C1        TCGA-HZ-7289        TCGA-HZ-7918 
"ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE" 
       TCGA-HZ-7919        TCGA-HZ-7922        TCGA-HZ-7923        TCGA-HZ-7924 
"ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE" 
       TCGA-HZ-7925        TCGA-HZ-7926        TCGA-HZ-8001        TCGA-HZ-8002 
"ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE" 
       TCGA-HZ-8003        TCGA-HZ-8005        TCGA-HZ-8315        TCGA-HZ-8317 
"ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE" 
       TCGA-HZ-8636        TCGA-HZ-8638        TCGA-HZ-A49G        TCGA-HZ-A49H 
"ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE" 
       TCGA-HZ-A4BH        TCGA-HZ-A4BK        TCGA-IB-7644        TCGA-IB-7645 
  "ARFGAP3 MUTATED" "ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE" 
       TCGA-IB-7646        TCGA-IB-7647        TCGA-IB-7649        TCGA-IB-7651 
"ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE" 
       TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-7886        TCGA-IB-7887 
"ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE" 
       TCGA-IB-7888        TCGA-IB-7889        TCGA-IB-7890        TCGA-IB-7891 
  "ARFGAP3 MUTATED" "ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE" 
       TCGA-IB-7893        TCGA-IB-7897        TCGA-IB-8126        TCGA-IB-8127 
  "ARFGAP3 MUTATED" "ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE" 
       TCGA-IB-A5SO        TCGA-IB-A5SP        TCGA-IB-A5SQ        TCGA-IB-A5SS 
"ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE" 
       TCGA-IB-A5ST        TCGA-IB-A6UG        TCGA-LB-A7SX        TCGA-OE-A75W 
"ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE" 
       TCGA-PZ-A5RE        TCGA-Q3-A5QY        TCGA-US-A779        TCGA-US-A77E 
"ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE"   "ARFGAP3 MUTATED" "ARFGAP3 WILD-TYPE" 
       TCGA-US-A77J 
"ARFGAP3 WILD-TYPE" 
       TCGA-F2-6879        TCGA-F2-6880        TCGA-F2-7273        TCGA-F2-7276 
"ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE"   "ARFGAP3 MUTATED" "ARFGAP3 WILD-TYPE" 
       TCGA-F2-A44G        TCGA-F2-A44H        TCGA-FB-A4P5        TCGA-FB-A4P6 
"ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE" 
       TCGA-FB-A545        TCGA-FB-A5VM        TCGA-FB-A78T        TCGA-FB-A7DR 
"ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE"   "ARFGAP3 MUTATED" 
       TCGA-FZ-5920        TCGA-FZ-5922        TCGA-FZ-5923        TCGA-H6-8124 
"ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE" 
       TCGA-H6-A45N        TCGA-H8-A6C1        TCGA-HZ-7289        TCGA-HZ-7918 
"ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE" 
       TCGA-HZ-7919        TCGA-HZ-7922        TCGA-HZ-7923        TCGA-HZ-7924 
"ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE" 
       TCGA-HZ-7925        TCGA-HZ-7926        TCGA-HZ-8001        TCGA-HZ-8002 
"ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE" 
       TCGA-HZ-8003        TCGA-HZ-8005        TCGA-HZ-8315        TCGA-HZ-8317 
"ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE" 
       TCGA-HZ-8636        TCGA-HZ-8638        TCGA-HZ-A49G        TCGA-HZ-A49H 
"ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE" 
       TCGA-HZ-A4BH        TCGA-HZ-A4BK        TCGA-IB-7644        TCGA-IB-7645 
  "ARFGAP3 MUTATED" "ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE" 
       TCGA-IB-7646        TCGA-IB-7647        TCGA-IB-7649        TCGA-IB-7651 
"ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE" 
       TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-7886        TCGA-IB-7887 
"ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE" 
       TCGA-IB-7888        TCGA-IB-7889        TCGA-IB-7890        TCGA-IB-7891 
  "ARFGAP3 MUTATED" "ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE" 
       TCGA-IB-7893        TCGA-IB-7897        TCGA-IB-8126        TCGA-IB-8127 
  "ARFGAP3 MUTATED" "ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE" 
       TCGA-IB-A5SO        TCGA-IB-A5SP        TCGA-IB-A5SQ        TCGA-IB-A5SS 
"ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE" 
       TCGA-IB-A5ST        TCGA-IB-A6UG        TCGA-LB-A7SX        TCGA-OE-A75W 
"ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE" 
       TCGA-PZ-A5RE        TCGA-Q3-A5QY        TCGA-US-A779        TCGA-US-A77E 
"ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE"   "ARFGAP3 MUTATED" "ARFGAP3 WILD-TYPE" 
       TCGA-US-A77J 
"ARFGAP3 WILD-TYPE" 
[1] "hr=" "1"  
D190V2, continuous
                   vv
clus                STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  ARFGAP3 MUTATED          0        0         3         3         0        0
  ARFGAP3 WILD-TYPE        1        4         8        48         2        3
D190V3, multiclass
                   vv
clus                T1+T2 T3+T4
  ARFGAP3 MUTATED       0     6
  ARFGAP3 WILD-TYPE     6    60
D190V4, multiclass
       clus
vv      ARFGAP3 MUTATED ARFGAP3 WILD-TYPE
  T1+T2               0                 6
  T3+T4               6                60
D190V5, binary
                   cls
clus                 0  1
  ARFGAP3 MUTATED    2  3
  ARFGAP3 WILD-TYPE 15 51
[1] "tbl2"
                   cls
clus                [,1] [,2]
  ARFGAP3 MUTATED      2    3
  ARFGAP3 WILD-TYPE   15   51
   clus
vv  ARFGAP3 MUTATED ARFGAP3 WILD-TYPE
  0               2                15
  1               3                51
                   vv
clus                M0 M1 MX
  ARFGAP3 MUTATED    4  0  2
  ARFGAP3 WILD-TYPE 35  3 28
D190V6, multiclass
    clus
vv   ARFGAP3 MUTATED ARFGAP3 WILD-TYPE
  M0               4                35
  M1               0                 3
  MX               2                28
D190V7, binary
                   cls
clus                 0  1
  ARFGAP3 MUTATED    2  4
  ARFGAP3 WILD-TYPE 34 32
[1] "tbl2"
                   cls
clus                [,1] [,2]
  ARFGAP3 MUTATED      2    4
  ARFGAP3 WILD-TYPE   34   32
        clus
vv       ARFGAP3 MUTATED ARFGAP3 WILD-TYPE
  FEMALE               2                34
  MALE                 4                32
                   vv
clus                PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  ARFGAP3 MUTATED                                     5
  ARFGAP3 WILD-TYPE                                  60
                   vv
clus                PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  ARFGAP3 MUTATED                                       0
  ARFGAP3 WILD-TYPE                                     4
                   vv
clus                PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  ARFGAP3 MUTATED                                                  1
  ARFGAP3 WILD-TYPE                                                1
D190V8, multiclass
                                                  clus
vv                                                 ARFGAP3 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                            5
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                          0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA               1
                                                  clus
vv                                                 ARFGAP3 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                             60
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                            4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                 1
D190V9, continuous
[1] "Remove cluster labels:" "ARFGAP3 MUTATED"       
clus
  ARFGAP3 MUTATED ARFGAP3 WILD-TYPE 
                1                21 
       TCGA-F2-6880        TCGA-FB-A4P5        TCGA-FB-A4P6        TCGA-FB-A5VM 
"ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE" 
       TCGA-FB-A78T        TCGA-H6-8124        TCGA-H6-A45N        TCGA-H8-A6C1 
"ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE" 
       TCGA-IB-7644        TCGA-IB-7649        TCGA-IB-7651        TCGA-IB-7885 
"ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE" 
       TCGA-IB-7886        TCGA-IB-7887        TCGA-IB-7891        TCGA-IB-8126 
"ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE" 
       TCGA-IB-8127        TCGA-IB-A5SS        TCGA-IB-A6UG        TCGA-LB-A7SX 
"ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE" 
       TCGA-OE-A75W 
"ARFGAP3 WILD-TYPE" 
D190V10, continuous
[1] "Remove cluster labels:" "ARFGAP3 MUTATED"       
clus
  ARFGAP3 MUTATED ARFGAP3 WILD-TYPE 
                1                18 
       TCGA-FB-A4P5        TCGA-FB-A4P6        TCGA-FB-A5VM        TCGA-FB-A78T 
"ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE" 
       TCGA-H6-8124        TCGA-H8-A6C1        TCGA-IB-7644        TCGA-IB-7649 
"ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE" 
       TCGA-IB-7651        TCGA-IB-7885        TCGA-IB-7886        TCGA-IB-7891 
"ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE" 
       TCGA-IB-8126        TCGA-IB-8127        TCGA-IB-A5SS        TCGA-IB-A6UG 
"ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE" 
       TCGA-LB-A7SX        TCGA-OE-A75W 
"ARFGAP3 WILD-TYPE" "ARFGAP3 WILD-TYPE" 
                   vv
clus                R0 R1 RX
  ARFGAP3 MUTATED    4  2  0
  ARFGAP3 WILD-TYPE 38 22  2
D190V11, multiclass
    clus
vv   ARFGAP3 MUTATED ARFGAP3 WILD-TYPE
  R0               4                38
  R1               2                22
  RX               0                 2
D190V12, continuous

Clustering(191) Variable = CRYGA MUTATION ANALYSIS
D191V1, survival
                 sevent
clus2              0  1
  CRYGA MUTATED    3  0
  CRYGA WILD-TYPE 37 29
  CRYGA MUTATED CRYGA WILD-TYPE 
              3              66 
  CRYGA MUTATED CRYGA WILD-TYPE 
              0              29 
$`CRYGA MUTATED`
TCGA-HZ-7919 TCGA-HZ-8317 TCGA-IB-8127 
        0.66         0.53        17.16 

$`CRYGA WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P5 TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR 
        0.13        11.93        12.66         2.47         0.03         5.46 
TCGA-FZ-5920 TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 
        2.01        36.20        20.81        12.89         7.66        13.02 
TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 
        7.89         0.92         0.13         0.26        12.13        11.87 
TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 
        0.26         0.62         0.79         0.69         3.95         0.92 
TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK 
        0.16         2.99         0.76         0.95         6.38         1.51 
TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7651 
       11.41        49.38         4.77        21.90        15.35        19.82 
TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 
       15.65        27.98         4.04         3.62        43.79        15.81 
TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-A5SO 
       19.66        16.04         3.85        15.98         0.56        10.82 
TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX 
        9.86         7.20        15.12         0.26         1.35         4.18 
TCGA-OE-A75W TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
        3.62         8.12        13.68        16.80        14.14        18.67 

  CRYGA MUTATED CRYGA WILD-TYPE 
           0.53            0.03 
  CRYGA MUTATED CRYGA WILD-TYPE 
          17.16           49.38 
  CRYGA MUTATED CRYGA WILD-TYPE 
          0.660           7.775 
[1] "0.5 - 17.2 (0.7)" "0.0 - 49.4 (7.8)"
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"CRYGA WILD-TYPE" "CRYGA WILD-TYPE" "CRYGA WILD-TYPE" "CRYGA WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"CRYGA WILD-TYPE" "CRYGA WILD-TYPE" "CRYGA WILD-TYPE" "CRYGA WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"CRYGA WILD-TYPE" "CRYGA WILD-TYPE" "CRYGA WILD-TYPE" "CRYGA WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"CRYGA WILD-TYPE" "CRYGA WILD-TYPE" "CRYGA WILD-TYPE" "CRYGA WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"CRYGA WILD-TYPE" "CRYGA WILD-TYPE" "CRYGA WILD-TYPE" "CRYGA WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
  "CRYGA MUTATED" "CRYGA WILD-TYPE" "CRYGA WILD-TYPE" "CRYGA WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"CRYGA WILD-TYPE" "CRYGA WILD-TYPE" "CRYGA WILD-TYPE" "CRYGA WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"CRYGA WILD-TYPE" "CRYGA WILD-TYPE" "CRYGA WILD-TYPE"   "CRYGA MUTATED" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"CRYGA WILD-TYPE" "CRYGA WILD-TYPE" "CRYGA WILD-TYPE" "CRYGA WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"CRYGA WILD-TYPE" "CRYGA WILD-TYPE" "CRYGA WILD-TYPE" "CRYGA WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"CRYGA WILD-TYPE" "CRYGA WILD-TYPE" "CRYGA WILD-TYPE" "CRYGA WILD-TYPE" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"CRYGA WILD-TYPE" "CRYGA WILD-TYPE" "CRYGA WILD-TYPE" "CRYGA WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"CRYGA WILD-TYPE" "CRYGA WILD-TYPE" "CRYGA WILD-TYPE" "CRYGA WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"CRYGA WILD-TYPE" "CRYGA WILD-TYPE" "CRYGA WILD-TYPE"   "CRYGA MUTATED" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"CRYGA WILD-TYPE" "CRYGA WILD-TYPE" "CRYGA WILD-TYPE" "CRYGA WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"CRYGA WILD-TYPE" "CRYGA WILD-TYPE" "CRYGA WILD-TYPE" "CRYGA WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"CRYGA WILD-TYPE" "CRYGA WILD-TYPE" "CRYGA WILD-TYPE" "CRYGA WILD-TYPE" 
     TCGA-US-A77J 
"CRYGA WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"CRYGA WILD-TYPE" "CRYGA WILD-TYPE" "CRYGA WILD-TYPE" "CRYGA WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"CRYGA WILD-TYPE" "CRYGA WILD-TYPE" "CRYGA WILD-TYPE" "CRYGA WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"CRYGA WILD-TYPE" "CRYGA WILD-TYPE" "CRYGA WILD-TYPE" "CRYGA WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"CRYGA WILD-TYPE" "CRYGA WILD-TYPE" "CRYGA WILD-TYPE" "CRYGA WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"CRYGA WILD-TYPE" "CRYGA WILD-TYPE" "CRYGA WILD-TYPE" "CRYGA WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
  "CRYGA MUTATED" "CRYGA WILD-TYPE" "CRYGA WILD-TYPE" "CRYGA WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"CRYGA WILD-TYPE" "CRYGA WILD-TYPE" "CRYGA WILD-TYPE" "CRYGA WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"CRYGA WILD-TYPE" "CRYGA WILD-TYPE" "CRYGA WILD-TYPE"   "CRYGA MUTATED" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"CRYGA WILD-TYPE" "CRYGA WILD-TYPE" "CRYGA WILD-TYPE" "CRYGA WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"CRYGA WILD-TYPE" "CRYGA WILD-TYPE" "CRYGA WILD-TYPE" "CRYGA WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"CRYGA WILD-TYPE" "CRYGA WILD-TYPE" "CRYGA WILD-TYPE" "CRYGA WILD-TYPE" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"CRYGA WILD-TYPE" "CRYGA WILD-TYPE" "CRYGA WILD-TYPE" "CRYGA WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"CRYGA WILD-TYPE" "CRYGA WILD-TYPE" "CRYGA WILD-TYPE" "CRYGA WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"CRYGA WILD-TYPE" "CRYGA WILD-TYPE" "CRYGA WILD-TYPE"   "CRYGA MUTATED" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"CRYGA WILD-TYPE" "CRYGA WILD-TYPE" "CRYGA WILD-TYPE" "CRYGA WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"CRYGA WILD-TYPE" "CRYGA WILD-TYPE" "CRYGA WILD-TYPE" "CRYGA WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"CRYGA WILD-TYPE" "CRYGA WILD-TYPE" "CRYGA WILD-TYPE" "CRYGA WILD-TYPE" 
     TCGA-US-A77J 
"CRYGA WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"CRYGA WILD-TYPE" "CRYGA WILD-TYPE" "CRYGA WILD-TYPE" "CRYGA WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"CRYGA WILD-TYPE" "CRYGA WILD-TYPE" "CRYGA WILD-TYPE" "CRYGA WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"CRYGA WILD-TYPE" "CRYGA WILD-TYPE" "CRYGA WILD-TYPE" "CRYGA WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"CRYGA WILD-TYPE" "CRYGA WILD-TYPE" "CRYGA WILD-TYPE" "CRYGA WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"CRYGA WILD-TYPE" "CRYGA WILD-TYPE" "CRYGA WILD-TYPE" "CRYGA WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
  "CRYGA MUTATED" "CRYGA WILD-TYPE" "CRYGA WILD-TYPE" "CRYGA WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"CRYGA WILD-TYPE" "CRYGA WILD-TYPE" "CRYGA WILD-TYPE" "CRYGA WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"CRYGA WILD-TYPE" "CRYGA WILD-TYPE" "CRYGA WILD-TYPE"   "CRYGA MUTATED" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"CRYGA WILD-TYPE" "CRYGA WILD-TYPE" "CRYGA WILD-TYPE" "CRYGA WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"CRYGA WILD-TYPE" "CRYGA WILD-TYPE" "CRYGA WILD-TYPE" "CRYGA WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"CRYGA WILD-TYPE" "CRYGA WILD-TYPE" "CRYGA WILD-TYPE" "CRYGA WILD-TYPE" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"CRYGA WILD-TYPE" "CRYGA WILD-TYPE" "CRYGA WILD-TYPE" "CRYGA WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"CRYGA WILD-TYPE" "CRYGA WILD-TYPE" "CRYGA WILD-TYPE" "CRYGA WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"CRYGA WILD-TYPE" "CRYGA WILD-TYPE" "CRYGA WILD-TYPE"   "CRYGA MUTATED" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"CRYGA WILD-TYPE" "CRYGA WILD-TYPE" "CRYGA WILD-TYPE" "CRYGA WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"CRYGA WILD-TYPE" "CRYGA WILD-TYPE" "CRYGA WILD-TYPE" "CRYGA WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"CRYGA WILD-TYPE" "CRYGA WILD-TYPE" "CRYGA WILD-TYPE" "CRYGA WILD-TYPE" 
     TCGA-US-A77J 
"CRYGA WILD-TYPE" 
[1] "hr="     "2.6e+07"
D191V2, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  CRYGA MUTATED          0        0         0         4         0        0
  CRYGA WILD-TYPE        1        4        11        47         2        3
D191V3, multiclass
                 vv
clus              T1+T2 T3+T4
  CRYGA MUTATED       0     4
  CRYGA WILD-TYPE     6    62
D191V4, multiclass
       clus
vv      CRYGA MUTATED CRYGA WILD-TYPE
  T1+T2             0               6
  T3+T4             4              62
D191V5, binary
                 cls
clus               0  1
  CRYGA MUTATED    0  4
  CRYGA WILD-TYPE 17 50
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CRYGA MUTATED      0    4
  CRYGA WILD-TYPE   17   50
   clus
vv  CRYGA MUTATED CRYGA WILD-TYPE
  0             0              17
  1             4              50
                 vv
clus              M0 M1 MX
  CRYGA MUTATED    2  0  2
  CRYGA WILD-TYPE 37  3 28
D191V6, multiclass
    clus
vv   CRYGA MUTATED CRYGA WILD-TYPE
  M0             2              37
  M1             0               3
  MX             2              28
D191V7, binary
                 cls
clus               0  1
  CRYGA MUTATED    3  1
  CRYGA WILD-TYPE 33 35
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CRYGA MUTATED      3    1
  CRYGA WILD-TYPE   33   35
        clus
vv       CRYGA MUTATED CRYGA WILD-TYPE
  FEMALE             3              33
  MALE               1              35
                 vv
clus              PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  CRYGA MUTATED                                     4
  CRYGA WILD-TYPE                                  61
                 vv
clus              PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  CRYGA MUTATED                                       0
  CRYGA WILD-TYPE                                     4
                 vv
clus              PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  CRYGA MUTATED                                                  0
  CRYGA WILD-TYPE                                                2
D191V8, multiclass
                                                  clus
vv                                                 CRYGA MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                          4
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                        0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA             0
                                                  clus
vv                                                 CRYGA WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                           61
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                          4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA               2
D191V9, continuous
[1] "Remove cluster labels:" "CRYGA MUTATED"         
clus
  CRYGA MUTATED CRYGA WILD-TYPE 
              1              21 
     TCGA-F2-6880      TCGA-FB-A4P5      TCGA-FB-A4P6      TCGA-FB-A5VM 
"CRYGA WILD-TYPE" "CRYGA WILD-TYPE" "CRYGA WILD-TYPE" "CRYGA WILD-TYPE" 
     TCGA-FB-A78T      TCGA-FB-A7DR      TCGA-H6-8124      TCGA-H6-A45N 
"CRYGA WILD-TYPE" "CRYGA WILD-TYPE" "CRYGA WILD-TYPE" "CRYGA WILD-TYPE" 
     TCGA-H8-A6C1      TCGA-IB-7644      TCGA-IB-7649      TCGA-IB-7651 
"CRYGA WILD-TYPE" "CRYGA WILD-TYPE" "CRYGA WILD-TYPE" "CRYGA WILD-TYPE" 
     TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887      TCGA-IB-7891 
"CRYGA WILD-TYPE" "CRYGA WILD-TYPE" "CRYGA WILD-TYPE" "CRYGA WILD-TYPE" 
     TCGA-IB-8126      TCGA-IB-A5SS      TCGA-IB-A6UG      TCGA-LB-A7SX 
"CRYGA WILD-TYPE" "CRYGA WILD-TYPE" "CRYGA WILD-TYPE" "CRYGA WILD-TYPE" 
     TCGA-OE-A75W 
"CRYGA WILD-TYPE" 
D191V10, continuous
[1] "Remove cluster labels:" "CRYGA MUTATED"         
clus
  CRYGA MUTATED CRYGA WILD-TYPE 
              1              18 
     TCGA-FB-A4P5      TCGA-FB-A4P6      TCGA-FB-A5VM      TCGA-FB-A78T 
"CRYGA WILD-TYPE" "CRYGA WILD-TYPE" "CRYGA WILD-TYPE" "CRYGA WILD-TYPE" 
     TCGA-FB-A7DR      TCGA-H6-8124      TCGA-H8-A6C1      TCGA-IB-7644 
"CRYGA WILD-TYPE" "CRYGA WILD-TYPE" "CRYGA WILD-TYPE" "CRYGA WILD-TYPE" 
     TCGA-IB-7649      TCGA-IB-7651      TCGA-IB-7885      TCGA-IB-7886 
"CRYGA WILD-TYPE" "CRYGA WILD-TYPE" "CRYGA WILD-TYPE" "CRYGA WILD-TYPE" 
     TCGA-IB-7891      TCGA-IB-8126      TCGA-IB-A5SS      TCGA-IB-A6UG 
"CRYGA WILD-TYPE" "CRYGA WILD-TYPE" "CRYGA WILD-TYPE" "CRYGA WILD-TYPE" 
     TCGA-LB-A7SX      TCGA-OE-A75W 
"CRYGA WILD-TYPE" "CRYGA WILD-TYPE" 
                 vv
clus              R0 R1 RX
  CRYGA MUTATED    1  3  0
  CRYGA WILD-TYPE 41 21  2
D191V11, multiclass
    clus
vv   CRYGA MUTATED CRYGA WILD-TYPE
  R0             1              41
  R1             3              21
  RX             0               2
D191V12, continuous

Clustering(192) Variable = PUM2 MUTATION ANALYSIS
D192V1, survival
                sevent
clus2             0  1
  PUM2 MUTATED    3  4
  PUM2 WILD-TYPE 37 25
  PUM2 MUTATED PUM2 WILD-TYPE 
             7             62 
  PUM2 MUTATED PUM2 WILD-TYPE 
             4             25 
$`PUM2 MUTATED`
TCGA-F2-6879 TCGA-HZ-8001 TCGA-HZ-A49G TCGA-IB-7651 TCGA-IB-7891 TCGA-IB-7893 
       10.98         0.62         0.76        19.82        16.04         3.85 
TCGA-IB-7897 
       15.98 

$`PUM2 WILD-TYPE`
TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H TCGA-FB-A4P5 
        9.70        11.84         7.10         5.03        19.27         0.13 
TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR TCGA-FZ-5920 
       11.93        12.66         2.47         0.03         5.46         2.01 
TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7289 
       36.20        20.81        12.89         7.66        13.02         7.89 
TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 
        0.92         0.66         0.13         0.26        12.13        11.87 
TCGA-HZ-7926 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 
        0.26         0.79         0.69         3.95         0.92         0.53 
TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 
        0.16         2.99         0.95         6.38         1.51        11.41 
TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7652 TCGA-IB-7885 
       49.38         4.77        21.90        15.35        15.65        27.98 
TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-8126 
        4.04         3.62        43.79        15.81        19.66         0.56 
TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST 
       17.16        10.82         9.86         7.20        15.12         0.26 
TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 
        1.35         4.18         3.62         8.12        13.68        16.80 
TCGA-US-A77E TCGA-US-A77J 
       14.14        18.67 

  PUM2 MUTATED PUM2 WILD-TYPE 
          0.62           0.03 
  PUM2 MUTATED PUM2 WILD-TYPE 
         19.82          49.38 
  PUM2 MUTATED PUM2 WILD-TYPE 
         10.98           7.43 
[1] "0.6 - 19.8 (11.0)" "0.0 - 49.4 (7.4)" 
    TCGA-F2-6879     TCGA-F2-6880     TCGA-F2-7273     TCGA-F2-7276 
  "PUM2 MUTATED" "PUM2 WILD-TYPE" "PUM2 WILD-TYPE" "PUM2 WILD-TYPE" 
    TCGA-F2-A44G     TCGA-F2-A44H     TCGA-FB-A4P5     TCGA-FB-A4P6 
"PUM2 WILD-TYPE" "PUM2 WILD-TYPE" "PUM2 WILD-TYPE" "PUM2 WILD-TYPE" 
    TCGA-FB-A545     TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-FB-A7DR 
"PUM2 WILD-TYPE" "PUM2 WILD-TYPE" "PUM2 WILD-TYPE" "PUM2 WILD-TYPE" 
    TCGA-FZ-5920     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-H6-8124 
"PUM2 WILD-TYPE" "PUM2 WILD-TYPE" "PUM2 WILD-TYPE" "PUM2 WILD-TYPE" 
    TCGA-H6-A45N     TCGA-H8-A6C1     TCGA-HZ-7289     TCGA-HZ-7918 
"PUM2 WILD-TYPE" "PUM2 WILD-TYPE" "PUM2 WILD-TYPE" "PUM2 WILD-TYPE" 
    TCGA-HZ-7919     TCGA-HZ-7922     TCGA-HZ-7923     TCGA-HZ-7924 
"PUM2 WILD-TYPE" "PUM2 WILD-TYPE" "PUM2 WILD-TYPE" "PUM2 WILD-TYPE" 
    TCGA-HZ-7925     TCGA-HZ-7926     TCGA-HZ-8001     TCGA-HZ-8002 
"PUM2 WILD-TYPE" "PUM2 WILD-TYPE"   "PUM2 MUTATED" "PUM2 WILD-TYPE" 
    TCGA-HZ-8003     TCGA-HZ-8005     TCGA-HZ-8315     TCGA-HZ-8317 
"PUM2 WILD-TYPE" "PUM2 WILD-TYPE" "PUM2 WILD-TYPE" "PUM2 WILD-TYPE" 
    TCGA-HZ-8636     TCGA-HZ-8638     TCGA-HZ-A49G     TCGA-HZ-A49H 
"PUM2 WILD-TYPE" "PUM2 WILD-TYPE"   "PUM2 MUTATED" "PUM2 WILD-TYPE" 
    TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-IB-7644     TCGA-IB-7645 
"PUM2 WILD-TYPE" "PUM2 WILD-TYPE" "PUM2 WILD-TYPE" "PUM2 WILD-TYPE" 
    TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7651 
"PUM2 WILD-TYPE" "PUM2 WILD-TYPE" "PUM2 WILD-TYPE"   "PUM2 MUTATED" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887 
"PUM2 WILD-TYPE" "PUM2 WILD-TYPE" "PUM2 WILD-TYPE" "PUM2 WILD-TYPE" 
    TCGA-IB-7888     TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891 
"PUM2 WILD-TYPE" "PUM2 WILD-TYPE" "PUM2 WILD-TYPE"   "PUM2 MUTATED" 
    TCGA-IB-7893     TCGA-IB-7897     TCGA-IB-8126     TCGA-IB-8127 
  "PUM2 MUTATED"   "PUM2 MUTATED" "PUM2 WILD-TYPE" "PUM2 WILD-TYPE" 
    TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS 
"PUM2 WILD-TYPE" "PUM2 WILD-TYPE" "PUM2 WILD-TYPE" "PUM2 WILD-TYPE" 
    TCGA-IB-A5ST     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
"PUM2 WILD-TYPE" "PUM2 WILD-TYPE" "PUM2 WILD-TYPE" "PUM2 WILD-TYPE" 
    TCGA-PZ-A5RE     TCGA-Q3-A5QY     TCGA-US-A779     TCGA-US-A77E 
"PUM2 WILD-TYPE" "PUM2 WILD-TYPE" "PUM2 WILD-TYPE" "PUM2 WILD-TYPE" 
    TCGA-US-A77J 
"PUM2 WILD-TYPE" 
    TCGA-F2-6879     TCGA-F2-6880     TCGA-F2-7273     TCGA-F2-7276 
  "PUM2 MUTATED" "PUM2 WILD-TYPE" "PUM2 WILD-TYPE" "PUM2 WILD-TYPE" 
    TCGA-F2-A44G     TCGA-F2-A44H     TCGA-FB-A4P5     TCGA-FB-A4P6 
"PUM2 WILD-TYPE" "PUM2 WILD-TYPE" "PUM2 WILD-TYPE" "PUM2 WILD-TYPE" 
    TCGA-FB-A545     TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-FB-A7DR 
"PUM2 WILD-TYPE" "PUM2 WILD-TYPE" "PUM2 WILD-TYPE" "PUM2 WILD-TYPE" 
    TCGA-FZ-5920     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-H6-8124 
"PUM2 WILD-TYPE" "PUM2 WILD-TYPE" "PUM2 WILD-TYPE" "PUM2 WILD-TYPE" 
    TCGA-H6-A45N     TCGA-H8-A6C1     TCGA-HZ-7289     TCGA-HZ-7918 
"PUM2 WILD-TYPE" "PUM2 WILD-TYPE" "PUM2 WILD-TYPE" "PUM2 WILD-TYPE" 
    TCGA-HZ-7919     TCGA-HZ-7922     TCGA-HZ-7923     TCGA-HZ-7924 
"PUM2 WILD-TYPE" "PUM2 WILD-TYPE" "PUM2 WILD-TYPE" "PUM2 WILD-TYPE" 
    TCGA-HZ-7925     TCGA-HZ-7926     TCGA-HZ-8001     TCGA-HZ-8002 
"PUM2 WILD-TYPE" "PUM2 WILD-TYPE"   "PUM2 MUTATED" "PUM2 WILD-TYPE" 
    TCGA-HZ-8003     TCGA-HZ-8005     TCGA-HZ-8315     TCGA-HZ-8317 
"PUM2 WILD-TYPE" "PUM2 WILD-TYPE" "PUM2 WILD-TYPE" "PUM2 WILD-TYPE" 
    TCGA-HZ-8636     TCGA-HZ-8638     TCGA-HZ-A49G     TCGA-HZ-A49H 
"PUM2 WILD-TYPE" "PUM2 WILD-TYPE"   "PUM2 MUTATED" "PUM2 WILD-TYPE" 
    TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-IB-7644     TCGA-IB-7645 
"PUM2 WILD-TYPE" "PUM2 WILD-TYPE" "PUM2 WILD-TYPE" "PUM2 WILD-TYPE" 
    TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7651 
"PUM2 WILD-TYPE" "PUM2 WILD-TYPE" "PUM2 WILD-TYPE"   "PUM2 MUTATED" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887 
"PUM2 WILD-TYPE" "PUM2 WILD-TYPE" "PUM2 WILD-TYPE" "PUM2 WILD-TYPE" 
    TCGA-IB-7888     TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891 
"PUM2 WILD-TYPE" "PUM2 WILD-TYPE" "PUM2 WILD-TYPE"   "PUM2 MUTATED" 
    TCGA-IB-7893     TCGA-IB-7897     TCGA-IB-8126     TCGA-IB-8127 
  "PUM2 MUTATED"   "PUM2 MUTATED" "PUM2 WILD-TYPE" "PUM2 WILD-TYPE" 
    TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS 
"PUM2 WILD-TYPE" "PUM2 WILD-TYPE" "PUM2 WILD-TYPE" "PUM2 WILD-TYPE" 
    TCGA-IB-A5ST     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
"PUM2 WILD-TYPE" "PUM2 WILD-TYPE" "PUM2 WILD-TYPE" "PUM2 WILD-TYPE" 
    TCGA-PZ-A5RE     TCGA-Q3-A5QY     TCGA-US-A779     TCGA-US-A77E 
"PUM2 WILD-TYPE" "PUM2 WILD-TYPE" "PUM2 WILD-TYPE" "PUM2 WILD-TYPE" 
    TCGA-US-A77J 
"PUM2 WILD-TYPE" 
    TCGA-F2-6879     TCGA-F2-6880     TCGA-F2-7273     TCGA-F2-7276 
  "PUM2 MUTATED" "PUM2 WILD-TYPE" "PUM2 WILD-TYPE" "PUM2 WILD-TYPE" 
    TCGA-F2-A44G     TCGA-F2-A44H     TCGA-FB-A4P5     TCGA-FB-A4P6 
"PUM2 WILD-TYPE" "PUM2 WILD-TYPE" "PUM2 WILD-TYPE" "PUM2 WILD-TYPE" 
    TCGA-FB-A545     TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-FB-A7DR 
"PUM2 WILD-TYPE" "PUM2 WILD-TYPE" "PUM2 WILD-TYPE" "PUM2 WILD-TYPE" 
    TCGA-FZ-5920     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-H6-8124 
"PUM2 WILD-TYPE" "PUM2 WILD-TYPE" "PUM2 WILD-TYPE" "PUM2 WILD-TYPE" 
    TCGA-H6-A45N     TCGA-H8-A6C1     TCGA-HZ-7289     TCGA-HZ-7918 
"PUM2 WILD-TYPE" "PUM2 WILD-TYPE" "PUM2 WILD-TYPE" "PUM2 WILD-TYPE" 
    TCGA-HZ-7919     TCGA-HZ-7922     TCGA-HZ-7923     TCGA-HZ-7924 
"PUM2 WILD-TYPE" "PUM2 WILD-TYPE" "PUM2 WILD-TYPE" "PUM2 WILD-TYPE" 
    TCGA-HZ-7925     TCGA-HZ-7926     TCGA-HZ-8001     TCGA-HZ-8002 
"PUM2 WILD-TYPE" "PUM2 WILD-TYPE"   "PUM2 MUTATED" "PUM2 WILD-TYPE" 
    TCGA-HZ-8003     TCGA-HZ-8005     TCGA-HZ-8315     TCGA-HZ-8317 
"PUM2 WILD-TYPE" "PUM2 WILD-TYPE" "PUM2 WILD-TYPE" "PUM2 WILD-TYPE" 
    TCGA-HZ-8636     TCGA-HZ-8638     TCGA-HZ-A49G     TCGA-HZ-A49H 
"PUM2 WILD-TYPE" "PUM2 WILD-TYPE"   "PUM2 MUTATED" "PUM2 WILD-TYPE" 
    TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-IB-7644     TCGA-IB-7645 
"PUM2 WILD-TYPE" "PUM2 WILD-TYPE" "PUM2 WILD-TYPE" "PUM2 WILD-TYPE" 
    TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7651 
"PUM2 WILD-TYPE" "PUM2 WILD-TYPE" "PUM2 WILD-TYPE"   "PUM2 MUTATED" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887 
"PUM2 WILD-TYPE" "PUM2 WILD-TYPE" "PUM2 WILD-TYPE" "PUM2 WILD-TYPE" 
    TCGA-IB-7888     TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891 
"PUM2 WILD-TYPE" "PUM2 WILD-TYPE" "PUM2 WILD-TYPE"   "PUM2 MUTATED" 
    TCGA-IB-7893     TCGA-IB-7897     TCGA-IB-8126     TCGA-IB-8127 
  "PUM2 MUTATED"   "PUM2 MUTATED" "PUM2 WILD-TYPE" "PUM2 WILD-TYPE" 
    TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS 
"PUM2 WILD-TYPE" "PUM2 WILD-TYPE" "PUM2 WILD-TYPE" "PUM2 WILD-TYPE" 
    TCGA-IB-A5ST     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
"PUM2 WILD-TYPE" "PUM2 WILD-TYPE" "PUM2 WILD-TYPE" "PUM2 WILD-TYPE" 
    TCGA-PZ-A5RE     TCGA-Q3-A5QY     TCGA-US-A779     TCGA-US-A77E 
"PUM2 WILD-TYPE" "PUM2 WILD-TYPE" "PUM2 WILD-TYPE" "PUM2 WILD-TYPE" 
    TCGA-US-A77J 
"PUM2 WILD-TYPE" 
[1] "hr=" "1.4"
D192V2, continuous
                vv
clus             STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  PUM2 MUTATED          0        0         1         6         1        0
  PUM2 WILD-TYPE        1        4        10        45         1        3
D192V3, multiclass
                vv
clus             T1+T2 T3+T4
  PUM2 MUTATED       1     7
  PUM2 WILD-TYPE     5    59
D192V4, multiclass
       clus
vv      PUM2 MUTATED PUM2 WILD-TYPE
  T1+T2            1              5
  T3+T4            7             59
D192V5, binary
                cls
clus              0  1
  PUM2 MUTATED    2  6
  PUM2 WILD-TYPE 15 48
[1] "tbl2"
                cls
clus             [,1] [,2]
  PUM2 MUTATED      2    6
  PUM2 WILD-TYPE   15   48
   clus
vv  PUM2 MUTATED PUM2 WILD-TYPE
  0            2             15
  1            6             48
                vv
clus             M0 M1 MX
  PUM2 MUTATED    5  0  3
  PUM2 WILD-TYPE 34  3 27
D192V6, multiclass
    clus
vv   PUM2 MUTATED PUM2 WILD-TYPE
  M0            5             34
  M1            0              3
  MX            3             27
D192V7, binary
                cls
clus              0  1
  PUM2 MUTATED    4  4
  PUM2 WILD-TYPE 32 32
[1] "tbl2"
                cls
clus             [,1] [,2]
  PUM2 MUTATED      4    4
  PUM2 WILD-TYPE   32   32
        clus
vv       PUM2 MUTATED PUM2 WILD-TYPE
  FEMALE            4             32
  MALE              4             32
                vv
clus             PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  PUM2 MUTATED                                     7
  PUM2 WILD-TYPE                                  58
                vv
clus             PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  PUM2 MUTATED                                       0
  PUM2 WILD-TYPE                                     4
                vv
clus             PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  PUM2 MUTATED                                                  0
  PUM2 WILD-TYPE                                                2
D192V8, multiclass
                                                  clus
vv                                                 PUM2 MUTATED PUM2 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                         7             58
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                       0              4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA            0              2
D192V9, continuous
[1] "Remove cluster labels:" "PUM2 MUTATED"          
clus
  PUM2 MUTATED PUM2 WILD-TYPE 
             2             20 
    TCGA-F2-6880     TCGA-FB-A4P5     TCGA-FB-A4P6     TCGA-FB-A5VM 
"PUM2 WILD-TYPE" "PUM2 WILD-TYPE" "PUM2 WILD-TYPE" "PUM2 WILD-TYPE" 
    TCGA-FB-A78T     TCGA-FB-A7DR     TCGA-H6-8124     TCGA-H6-A45N 
"PUM2 WILD-TYPE" "PUM2 WILD-TYPE" "PUM2 WILD-TYPE" "PUM2 WILD-TYPE" 
    TCGA-H8-A6C1     TCGA-IB-7644     TCGA-IB-7649     TCGA-IB-7885 
"PUM2 WILD-TYPE" "PUM2 WILD-TYPE" "PUM2 WILD-TYPE" "PUM2 WILD-TYPE" 
    TCGA-IB-7886     TCGA-IB-7887     TCGA-IB-8126     TCGA-IB-8127 
"PUM2 WILD-TYPE" "PUM2 WILD-TYPE" "PUM2 WILD-TYPE" "PUM2 WILD-TYPE" 
    TCGA-IB-A5SS     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
"PUM2 WILD-TYPE" "PUM2 WILD-TYPE" "PUM2 WILD-TYPE" "PUM2 WILD-TYPE" 
D192V10, continuous
[1] "Remove cluster labels:" "PUM2 MUTATED"          
clus
  PUM2 MUTATED PUM2 WILD-TYPE 
             2             17 
    TCGA-FB-A4P5     TCGA-FB-A4P6     TCGA-FB-A5VM     TCGA-FB-A78T 
"PUM2 WILD-TYPE" "PUM2 WILD-TYPE" "PUM2 WILD-TYPE" "PUM2 WILD-TYPE" 
    TCGA-FB-A7DR     TCGA-H6-8124     TCGA-H8-A6C1     TCGA-IB-7644 
"PUM2 WILD-TYPE" "PUM2 WILD-TYPE" "PUM2 WILD-TYPE" "PUM2 WILD-TYPE" 
    TCGA-IB-7649     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-8126 
"PUM2 WILD-TYPE" "PUM2 WILD-TYPE" "PUM2 WILD-TYPE" "PUM2 WILD-TYPE" 
    TCGA-IB-8127     TCGA-IB-A5SS     TCGA-IB-A6UG     TCGA-LB-A7SX 
"PUM2 WILD-TYPE" "PUM2 WILD-TYPE" "PUM2 WILD-TYPE" "PUM2 WILD-TYPE" 
    TCGA-OE-A75W 
"PUM2 WILD-TYPE" 
                vv
clus             R0 R1 RX
  PUM2 MUTATED    7  1  0
  PUM2 WILD-TYPE 35 23  2
D192V11, multiclass
    clus
vv   PUM2 MUTATED PUM2 WILD-TYPE
  R0            7             35
  R1            1             23
  RX            0              2
D192V12, continuous

Clustering(193) Variable = YTHDF1 MUTATION ANALYSIS
D193V1, survival
                  sevent
clus2               0  1
  YTHDF1 MUTATED    5  3
  YTHDF1 WILD-TYPE 35 26
  YTHDF1 MUTATED YTHDF1 WILD-TYPE 
               8               61 
  YTHDF1 MUTATED YTHDF1 WILD-TYPE 
               3               26 
$`YTHDF1 MUTATED`
TCGA-FB-A545 TCGA-FB-A5VM TCGA-HZ-7289 TCGA-HZ-7919 TCGA-IB-7890 TCGA-IB-7891 
       12.66         2.47         7.89         0.66        19.66        16.04 
TCGA-IB-7897 TCGA-IB-A5SQ 
       15.98         7.20 

$`YTHDF1 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P5 TCGA-FB-A4P6 TCGA-FB-A78T TCGA-FB-A7DR TCGA-FZ-5920 TCGA-FZ-5922 
        0.13        11.93         0.03         5.46         2.01        36.20 
TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7918 TCGA-HZ-7922 
       20.81        12.89         7.66        13.02         0.92         0.13 
TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 
        0.26        12.13        11.87         0.26         0.62         0.79 
TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8636 TCGA-HZ-8638 
        0.69         3.95         0.92         0.53         0.16         2.99 
TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7645 
        0.76         0.95         6.38         1.51        11.41        49.38 
TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7651 TCGA-IB-7652 TCGA-IB-7885 
        4.77        21.90        15.35        19.82        15.65        27.98 
TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7893 TCGA-IB-8126 
        4.04         3.62        43.79        15.81         3.85         0.56 
TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG 
       17.16        10.82         9.86        15.12         0.26         1.35 
TCGA-LB-A7SX TCGA-OE-A75W TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E 
        4.18         3.62         8.12        13.68        16.80        14.14 
TCGA-US-A77J 
       18.67 

  YTHDF1 MUTATED YTHDF1 WILD-TYPE 
            0.66             0.03 
  YTHDF1 MUTATED YTHDF1 WILD-TYPE 
           19.66            49.38 
  YTHDF1 MUTATED YTHDF1 WILD-TYPE 
          10.275            7.100 
[1] "0.7 - 19.7 (10.3)" "0.0 - 49.4 (7.1)" 
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
"YTHDF1 WILD-TYPE" "YTHDF1 WILD-TYPE" "YTHDF1 WILD-TYPE" "YTHDF1 WILD-TYPE" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"YTHDF1 WILD-TYPE" "YTHDF1 WILD-TYPE" "YTHDF1 WILD-TYPE" "YTHDF1 WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
  "YTHDF1 MUTATED"   "YTHDF1 MUTATED" "YTHDF1 WILD-TYPE" "YTHDF1 WILD-TYPE" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"YTHDF1 WILD-TYPE" "YTHDF1 WILD-TYPE" "YTHDF1 WILD-TYPE" "YTHDF1 WILD-TYPE" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
"YTHDF1 WILD-TYPE" "YTHDF1 WILD-TYPE"   "YTHDF1 MUTATED" "YTHDF1 WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
  "YTHDF1 MUTATED" "YTHDF1 WILD-TYPE" "YTHDF1 WILD-TYPE" "YTHDF1 WILD-TYPE" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"YTHDF1 WILD-TYPE" "YTHDF1 WILD-TYPE" "YTHDF1 WILD-TYPE" "YTHDF1 WILD-TYPE" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
"YTHDF1 WILD-TYPE" "YTHDF1 WILD-TYPE" "YTHDF1 WILD-TYPE" "YTHDF1 WILD-TYPE" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
"YTHDF1 WILD-TYPE" "YTHDF1 WILD-TYPE" "YTHDF1 WILD-TYPE" "YTHDF1 WILD-TYPE" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
"YTHDF1 WILD-TYPE" "YTHDF1 WILD-TYPE" "YTHDF1 WILD-TYPE" "YTHDF1 WILD-TYPE" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
"YTHDF1 WILD-TYPE" "YTHDF1 WILD-TYPE" "YTHDF1 WILD-TYPE" "YTHDF1 WILD-TYPE" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
"YTHDF1 WILD-TYPE" "YTHDF1 WILD-TYPE" "YTHDF1 WILD-TYPE" "YTHDF1 WILD-TYPE" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
"YTHDF1 WILD-TYPE" "YTHDF1 WILD-TYPE"   "YTHDF1 MUTATED"   "YTHDF1 MUTATED" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
"YTHDF1 WILD-TYPE"   "YTHDF1 MUTATED" "YTHDF1 WILD-TYPE" "YTHDF1 WILD-TYPE" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"YTHDF1 WILD-TYPE" "YTHDF1 WILD-TYPE"   "YTHDF1 MUTATED" "YTHDF1 WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"YTHDF1 WILD-TYPE" "YTHDF1 WILD-TYPE" "YTHDF1 WILD-TYPE" "YTHDF1 WILD-TYPE" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
"YTHDF1 WILD-TYPE" "YTHDF1 WILD-TYPE" "YTHDF1 WILD-TYPE" "YTHDF1 WILD-TYPE" 
      TCGA-US-A77J 
"YTHDF1 WILD-TYPE" 
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
"YTHDF1 WILD-TYPE" "YTHDF1 WILD-TYPE" "YTHDF1 WILD-TYPE" "YTHDF1 WILD-TYPE" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"YTHDF1 WILD-TYPE" "YTHDF1 WILD-TYPE" "YTHDF1 WILD-TYPE" "YTHDF1 WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
  "YTHDF1 MUTATED"   "YTHDF1 MUTATED" "YTHDF1 WILD-TYPE" "YTHDF1 WILD-TYPE" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"YTHDF1 WILD-TYPE" "YTHDF1 WILD-TYPE" "YTHDF1 WILD-TYPE" "YTHDF1 WILD-TYPE" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
"YTHDF1 WILD-TYPE" "YTHDF1 WILD-TYPE"   "YTHDF1 MUTATED" "YTHDF1 WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
  "YTHDF1 MUTATED" "YTHDF1 WILD-TYPE" "YTHDF1 WILD-TYPE" "YTHDF1 WILD-TYPE" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"YTHDF1 WILD-TYPE" "YTHDF1 WILD-TYPE" "YTHDF1 WILD-TYPE" "YTHDF1 WILD-TYPE" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
"YTHDF1 WILD-TYPE" "YTHDF1 WILD-TYPE" "YTHDF1 WILD-TYPE" "YTHDF1 WILD-TYPE" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
"YTHDF1 WILD-TYPE" "YTHDF1 WILD-TYPE" "YTHDF1 WILD-TYPE" "YTHDF1 WILD-TYPE" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
"YTHDF1 WILD-TYPE" "YTHDF1 WILD-TYPE" "YTHDF1 WILD-TYPE" "YTHDF1 WILD-TYPE" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
"YTHDF1 WILD-TYPE" "YTHDF1 WILD-TYPE" "YTHDF1 WILD-TYPE" "YTHDF1 WILD-TYPE" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
"YTHDF1 WILD-TYPE" "YTHDF1 WILD-TYPE" "YTHDF1 WILD-TYPE" "YTHDF1 WILD-TYPE" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
"YTHDF1 WILD-TYPE" "YTHDF1 WILD-TYPE"   "YTHDF1 MUTATED"   "YTHDF1 MUTATED" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
"YTHDF1 WILD-TYPE"   "YTHDF1 MUTATED" "YTHDF1 WILD-TYPE" "YTHDF1 WILD-TYPE" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"YTHDF1 WILD-TYPE" "YTHDF1 WILD-TYPE"   "YTHDF1 MUTATED" "YTHDF1 WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"YTHDF1 WILD-TYPE" "YTHDF1 WILD-TYPE" "YTHDF1 WILD-TYPE" "YTHDF1 WILD-TYPE" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
"YTHDF1 WILD-TYPE" "YTHDF1 WILD-TYPE" "YTHDF1 WILD-TYPE" "YTHDF1 WILD-TYPE" 
      TCGA-US-A77J 
"YTHDF1 WILD-TYPE" 
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
"YTHDF1 WILD-TYPE" "YTHDF1 WILD-TYPE" "YTHDF1 WILD-TYPE" "YTHDF1 WILD-TYPE" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"YTHDF1 WILD-TYPE" "YTHDF1 WILD-TYPE" "YTHDF1 WILD-TYPE" "YTHDF1 WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
  "YTHDF1 MUTATED"   "YTHDF1 MUTATED" "YTHDF1 WILD-TYPE" "YTHDF1 WILD-TYPE" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"YTHDF1 WILD-TYPE" "YTHDF1 WILD-TYPE" "YTHDF1 WILD-TYPE" "YTHDF1 WILD-TYPE" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
"YTHDF1 WILD-TYPE" "YTHDF1 WILD-TYPE"   "YTHDF1 MUTATED" "YTHDF1 WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
  "YTHDF1 MUTATED" "YTHDF1 WILD-TYPE" "YTHDF1 WILD-TYPE" "YTHDF1 WILD-TYPE" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"YTHDF1 WILD-TYPE" "YTHDF1 WILD-TYPE" "YTHDF1 WILD-TYPE" "YTHDF1 WILD-TYPE" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
"YTHDF1 WILD-TYPE" "YTHDF1 WILD-TYPE" "YTHDF1 WILD-TYPE" "YTHDF1 WILD-TYPE" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
"YTHDF1 WILD-TYPE" "YTHDF1 WILD-TYPE" "YTHDF1 WILD-TYPE" "YTHDF1 WILD-TYPE" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
"YTHDF1 WILD-TYPE" "YTHDF1 WILD-TYPE" "YTHDF1 WILD-TYPE" "YTHDF1 WILD-TYPE" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
"YTHDF1 WILD-TYPE" "YTHDF1 WILD-TYPE" "YTHDF1 WILD-TYPE" "YTHDF1 WILD-TYPE" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
"YTHDF1 WILD-TYPE" "YTHDF1 WILD-TYPE" "YTHDF1 WILD-TYPE" "YTHDF1 WILD-TYPE" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
"YTHDF1 WILD-TYPE" "YTHDF1 WILD-TYPE"   "YTHDF1 MUTATED"   "YTHDF1 MUTATED" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
"YTHDF1 WILD-TYPE"   "YTHDF1 MUTATED" "YTHDF1 WILD-TYPE" "YTHDF1 WILD-TYPE" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"YTHDF1 WILD-TYPE" "YTHDF1 WILD-TYPE"   "YTHDF1 MUTATED" "YTHDF1 WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"YTHDF1 WILD-TYPE" "YTHDF1 WILD-TYPE" "YTHDF1 WILD-TYPE" "YTHDF1 WILD-TYPE" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
"YTHDF1 WILD-TYPE" "YTHDF1 WILD-TYPE" "YTHDF1 WILD-TYPE" "YTHDF1 WILD-TYPE" 
      TCGA-US-A77J 
"YTHDF1 WILD-TYPE" 
[1] "hr=" "1.1"
D193V2, continuous
                  vv
clus               STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  YTHDF1 MUTATED          0        3         0         5         0        0
  YTHDF1 WILD-TYPE        1        1        11        46         2        3
D193V3, multiclass
                  vv
clus               T1+T2 T3+T4
  YTHDF1 MUTATED       3     5
  YTHDF1 WILD-TYPE     3    61
D193V4, multiclass
       clus
vv      YTHDF1 MUTATED YTHDF1 WILD-TYPE
  T1+T2              3                3
  T3+T4              5               61
D193V5, binary
                  cls
clus                0  1
  YTHDF1 MUTATED    3  5
  YTHDF1 WILD-TYPE 14 49
[1] "tbl2"
                  cls
clus               [,1] [,2]
  YTHDF1 MUTATED      3    5
  YTHDF1 WILD-TYPE   14   49
   clus
vv  YTHDF1 MUTATED YTHDF1 WILD-TYPE
  0              3               14
  1              5               49
                  vv
clus               M0 M1 MX
  YTHDF1 MUTATED    7  0  1
  YTHDF1 WILD-TYPE 32  3 29
D193V6, multiclass
    clus
vv   YTHDF1 MUTATED YTHDF1 WILD-TYPE
  M0              7               32
  M1              0                3
  MX              1               29
D193V7, binary
                  cls
clus                0  1
  YTHDF1 MUTATED    4  4
  YTHDF1 WILD-TYPE 32 32
[1] "tbl2"
                  cls
clus               [,1] [,2]
  YTHDF1 MUTATED      4    4
  YTHDF1 WILD-TYPE   32   32
        clus
vv       YTHDF1 MUTATED YTHDF1 WILD-TYPE
  FEMALE              4               32
  MALE                4               32
                  vv
clus               PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  YTHDF1 MUTATED                                     7
  YTHDF1 WILD-TYPE                                  58
                  vv
clus               PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  YTHDF1 MUTATED                                       1
  YTHDF1 WILD-TYPE                                     3
                  vv
clus               PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  YTHDF1 MUTATED                                                  0
  YTHDF1 WILD-TYPE                                                2
D193V8, multiclass
                                                  clus
vv                                                 YTHDF1 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                           7
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                         1
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA              0
                                                  clus
vv                                                 YTHDF1 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                            58
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                           3
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                2
D193V9, continuous
[1] "Remove cluster labels:" "YTHDF1 MUTATED"        
clus
  YTHDF1 MUTATED YTHDF1 WILD-TYPE 
               2               20 
      TCGA-F2-6880       TCGA-FB-A4P5       TCGA-FB-A4P6       TCGA-FB-A78T 
"YTHDF1 WILD-TYPE" "YTHDF1 WILD-TYPE" "YTHDF1 WILD-TYPE" "YTHDF1 WILD-TYPE" 
      TCGA-FB-A7DR       TCGA-H6-8124       TCGA-H6-A45N       TCGA-H8-A6C1 
"YTHDF1 WILD-TYPE" "YTHDF1 WILD-TYPE" "YTHDF1 WILD-TYPE" "YTHDF1 WILD-TYPE" 
      TCGA-IB-7644       TCGA-IB-7649       TCGA-IB-7651       TCGA-IB-7885 
"YTHDF1 WILD-TYPE" "YTHDF1 WILD-TYPE" "YTHDF1 WILD-TYPE" "YTHDF1 WILD-TYPE" 
      TCGA-IB-7886       TCGA-IB-7887       TCGA-IB-8126       TCGA-IB-8127 
"YTHDF1 WILD-TYPE" "YTHDF1 WILD-TYPE" "YTHDF1 WILD-TYPE" "YTHDF1 WILD-TYPE" 
      TCGA-IB-A5SS       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"YTHDF1 WILD-TYPE" "YTHDF1 WILD-TYPE" "YTHDF1 WILD-TYPE" "YTHDF1 WILD-TYPE" 
D193V10, continuous
[1] "Remove cluster labels:" "YTHDF1 MUTATED"        
clus
  YTHDF1 MUTATED YTHDF1 WILD-TYPE 
               2               17 
      TCGA-FB-A4P5       TCGA-FB-A4P6       TCGA-FB-A78T       TCGA-FB-A7DR 
"YTHDF1 WILD-TYPE" "YTHDF1 WILD-TYPE" "YTHDF1 WILD-TYPE" "YTHDF1 WILD-TYPE" 
      TCGA-H6-8124       TCGA-H8-A6C1       TCGA-IB-7644       TCGA-IB-7649 
"YTHDF1 WILD-TYPE" "YTHDF1 WILD-TYPE" "YTHDF1 WILD-TYPE" "YTHDF1 WILD-TYPE" 
      TCGA-IB-7651       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-8126 
"YTHDF1 WILD-TYPE" "YTHDF1 WILD-TYPE" "YTHDF1 WILD-TYPE" "YTHDF1 WILD-TYPE" 
      TCGA-IB-8127       TCGA-IB-A5SS       TCGA-IB-A6UG       TCGA-LB-A7SX 
"YTHDF1 WILD-TYPE" "YTHDF1 WILD-TYPE" "YTHDF1 WILD-TYPE" "YTHDF1 WILD-TYPE" 
      TCGA-OE-A75W 
"YTHDF1 WILD-TYPE" 
                  vv
clus               R0 R1 RX
  YTHDF1 MUTATED    5  1  1
  YTHDF1 WILD-TYPE 37 23  1
D193V11, multiclass
    clus
vv   YTHDF1 MUTATED YTHDF1 WILD-TYPE
  R0              5               37
  R1              1               23
  RX              1                1
D193V12, continuous

Clustering(194) Variable = PLAU MUTATION ANALYSIS
D194V1, survival
                sevent
clus2             0  1
  PLAU MUTATED    3  4
  PLAU WILD-TYPE 37 25
  PLAU MUTATED PLAU WILD-TYPE 
             7             62 
  PLAU MUTATED PLAU WILD-TYPE 
             4             25 
$`PLAU MUTATED`
TCGA-F2-7273 TCGA-FB-A4P6 TCGA-HZ-8317 TCGA-IB-7649 TCGA-IB-7651 TCGA-IB-A5SQ 
       11.84        11.93         0.53        15.35        19.82         7.20 
TCGA-IB-A5ST 
        0.26 

$`PLAU WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H TCGA-FB-A4P5 
       10.98         9.70         7.10         5.03        19.27         0.13 
TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR TCGA-FZ-5920 TCGA-FZ-5922 
       12.66         2.47         0.03         5.46         2.01        36.20 
TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7289 TCGA-HZ-7918 
       20.81        12.89         7.66        13.02         7.89         0.92 
TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 
        0.66         0.13         0.26        12.13        11.87         0.26 
TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8636 
        0.62         0.79         0.69         3.95         0.92         0.16 
TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 
        2.99         0.76         0.95         6.38         1.51        11.41 
TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7886 
       49.38         4.77        21.90        15.65        27.98         4.04 
TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-7893 
        3.62        43.79        15.81        19.66        16.04         3.85 
TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SS 
       15.98         0.56        17.16        10.82         9.86        15.12 
TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 
        1.35         4.18         3.62         8.12        13.68        16.80 
TCGA-US-A77E TCGA-US-A77J 
       14.14        18.67 

  PLAU MUTATED PLAU WILD-TYPE 
          0.26           0.03 
  PLAU MUTATED PLAU WILD-TYPE 
         19.82          49.38 
  PLAU MUTATED PLAU WILD-TYPE 
         11.84           7.38 
[1] "0.3 - 19.8 (11.8)" "0.0 - 49.4 (7.4)" 
    TCGA-F2-6879     TCGA-F2-6880     TCGA-F2-7273     TCGA-F2-7276 
"PLAU WILD-TYPE" "PLAU WILD-TYPE"   "PLAU MUTATED" "PLAU WILD-TYPE" 
    TCGA-F2-A44G     TCGA-F2-A44H     TCGA-FB-A4P5     TCGA-FB-A4P6 
"PLAU WILD-TYPE" "PLAU WILD-TYPE" "PLAU WILD-TYPE"   "PLAU MUTATED" 
    TCGA-FB-A545     TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-FB-A7DR 
"PLAU WILD-TYPE" "PLAU WILD-TYPE" "PLAU WILD-TYPE" "PLAU WILD-TYPE" 
    TCGA-FZ-5920     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-H6-8124 
"PLAU WILD-TYPE" "PLAU WILD-TYPE" "PLAU WILD-TYPE" "PLAU WILD-TYPE" 
    TCGA-H6-A45N     TCGA-H8-A6C1     TCGA-HZ-7289     TCGA-HZ-7918 
"PLAU WILD-TYPE" "PLAU WILD-TYPE" "PLAU WILD-TYPE" "PLAU WILD-TYPE" 
    TCGA-HZ-7919     TCGA-HZ-7922     TCGA-HZ-7923     TCGA-HZ-7924 
"PLAU WILD-TYPE" "PLAU WILD-TYPE" "PLAU WILD-TYPE" "PLAU WILD-TYPE" 
    TCGA-HZ-7925     TCGA-HZ-7926     TCGA-HZ-8001     TCGA-HZ-8002 
"PLAU WILD-TYPE" "PLAU WILD-TYPE" "PLAU WILD-TYPE" "PLAU WILD-TYPE" 
    TCGA-HZ-8003     TCGA-HZ-8005     TCGA-HZ-8315     TCGA-HZ-8317 
"PLAU WILD-TYPE" "PLAU WILD-TYPE" "PLAU WILD-TYPE"   "PLAU MUTATED" 
    TCGA-HZ-8636     TCGA-HZ-8638     TCGA-HZ-A49G     TCGA-HZ-A49H 
"PLAU WILD-TYPE" "PLAU WILD-TYPE" "PLAU WILD-TYPE" "PLAU WILD-TYPE" 
    TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-IB-7644     TCGA-IB-7645 
"PLAU WILD-TYPE" "PLAU WILD-TYPE" "PLAU WILD-TYPE" "PLAU WILD-TYPE" 
    TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7651 
"PLAU WILD-TYPE" "PLAU WILD-TYPE"   "PLAU MUTATED"   "PLAU MUTATED" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887 
"PLAU WILD-TYPE" "PLAU WILD-TYPE" "PLAU WILD-TYPE" "PLAU WILD-TYPE" 
    TCGA-IB-7888     TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891 
"PLAU WILD-TYPE" "PLAU WILD-TYPE" "PLAU WILD-TYPE" "PLAU WILD-TYPE" 
    TCGA-IB-7893     TCGA-IB-7897     TCGA-IB-8126     TCGA-IB-8127 
"PLAU WILD-TYPE" "PLAU WILD-TYPE" "PLAU WILD-TYPE" "PLAU WILD-TYPE" 
    TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS 
"PLAU WILD-TYPE" "PLAU WILD-TYPE"   "PLAU MUTATED" "PLAU WILD-TYPE" 
    TCGA-IB-A5ST     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
  "PLAU MUTATED" "PLAU WILD-TYPE" "PLAU WILD-TYPE" "PLAU WILD-TYPE" 
    TCGA-PZ-A5RE     TCGA-Q3-A5QY     TCGA-US-A779     TCGA-US-A77E 
"PLAU WILD-TYPE" "PLAU WILD-TYPE" "PLAU WILD-TYPE" "PLAU WILD-TYPE" 
    TCGA-US-A77J 
"PLAU WILD-TYPE" 
    TCGA-F2-6879     TCGA-F2-6880     TCGA-F2-7273     TCGA-F2-7276 
"PLAU WILD-TYPE" "PLAU WILD-TYPE"   "PLAU MUTATED" "PLAU WILD-TYPE" 
    TCGA-F2-A44G     TCGA-F2-A44H     TCGA-FB-A4P5     TCGA-FB-A4P6 
"PLAU WILD-TYPE" "PLAU WILD-TYPE" "PLAU WILD-TYPE"   "PLAU MUTATED" 
    TCGA-FB-A545     TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-FB-A7DR 
"PLAU WILD-TYPE" "PLAU WILD-TYPE" "PLAU WILD-TYPE" "PLAU WILD-TYPE" 
    TCGA-FZ-5920     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-H6-8124 
"PLAU WILD-TYPE" "PLAU WILD-TYPE" "PLAU WILD-TYPE" "PLAU WILD-TYPE" 
    TCGA-H6-A45N     TCGA-H8-A6C1     TCGA-HZ-7289     TCGA-HZ-7918 
"PLAU WILD-TYPE" "PLAU WILD-TYPE" "PLAU WILD-TYPE" "PLAU WILD-TYPE" 
    TCGA-HZ-7919     TCGA-HZ-7922     TCGA-HZ-7923     TCGA-HZ-7924 
"PLAU WILD-TYPE" "PLAU WILD-TYPE" "PLAU WILD-TYPE" "PLAU WILD-TYPE" 
    TCGA-HZ-7925     TCGA-HZ-7926     TCGA-HZ-8001     TCGA-HZ-8002 
"PLAU WILD-TYPE" "PLAU WILD-TYPE" "PLAU WILD-TYPE" "PLAU WILD-TYPE" 
    TCGA-HZ-8003     TCGA-HZ-8005     TCGA-HZ-8315     TCGA-HZ-8317 
"PLAU WILD-TYPE" "PLAU WILD-TYPE" "PLAU WILD-TYPE"   "PLAU MUTATED" 
    TCGA-HZ-8636     TCGA-HZ-8638     TCGA-HZ-A49G     TCGA-HZ-A49H 
"PLAU WILD-TYPE" "PLAU WILD-TYPE" "PLAU WILD-TYPE" "PLAU WILD-TYPE" 
    TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-IB-7644     TCGA-IB-7645 
"PLAU WILD-TYPE" "PLAU WILD-TYPE" "PLAU WILD-TYPE" "PLAU WILD-TYPE" 
    TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7651 
"PLAU WILD-TYPE" "PLAU WILD-TYPE"   "PLAU MUTATED"   "PLAU MUTATED" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887 
"PLAU WILD-TYPE" "PLAU WILD-TYPE" "PLAU WILD-TYPE" "PLAU WILD-TYPE" 
    TCGA-IB-7888     TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891 
"PLAU WILD-TYPE" "PLAU WILD-TYPE" "PLAU WILD-TYPE" "PLAU WILD-TYPE" 
    TCGA-IB-7893     TCGA-IB-7897     TCGA-IB-8126     TCGA-IB-8127 
"PLAU WILD-TYPE" "PLAU WILD-TYPE" "PLAU WILD-TYPE" "PLAU WILD-TYPE" 
    TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS 
"PLAU WILD-TYPE" "PLAU WILD-TYPE"   "PLAU MUTATED" "PLAU WILD-TYPE" 
    TCGA-IB-A5ST     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
  "PLAU MUTATED" "PLAU WILD-TYPE" "PLAU WILD-TYPE" "PLAU WILD-TYPE" 
    TCGA-PZ-A5RE     TCGA-Q3-A5QY     TCGA-US-A779     TCGA-US-A77E 
"PLAU WILD-TYPE" "PLAU WILD-TYPE" "PLAU WILD-TYPE" "PLAU WILD-TYPE" 
    TCGA-US-A77J 
"PLAU WILD-TYPE" 
    TCGA-F2-6879     TCGA-F2-6880     TCGA-F2-7273     TCGA-F2-7276 
"PLAU WILD-TYPE" "PLAU WILD-TYPE"   "PLAU MUTATED" "PLAU WILD-TYPE" 
    TCGA-F2-A44G     TCGA-F2-A44H     TCGA-FB-A4P5     TCGA-FB-A4P6 
"PLAU WILD-TYPE" "PLAU WILD-TYPE" "PLAU WILD-TYPE"   "PLAU MUTATED" 
    TCGA-FB-A545     TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-FB-A7DR 
"PLAU WILD-TYPE" "PLAU WILD-TYPE" "PLAU WILD-TYPE" "PLAU WILD-TYPE" 
    TCGA-FZ-5920     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-H6-8124 
"PLAU WILD-TYPE" "PLAU WILD-TYPE" "PLAU WILD-TYPE" "PLAU WILD-TYPE" 
    TCGA-H6-A45N     TCGA-H8-A6C1     TCGA-HZ-7289     TCGA-HZ-7918 
"PLAU WILD-TYPE" "PLAU WILD-TYPE" "PLAU WILD-TYPE" "PLAU WILD-TYPE" 
    TCGA-HZ-7919     TCGA-HZ-7922     TCGA-HZ-7923     TCGA-HZ-7924 
"PLAU WILD-TYPE" "PLAU WILD-TYPE" "PLAU WILD-TYPE" "PLAU WILD-TYPE" 
    TCGA-HZ-7925     TCGA-HZ-7926     TCGA-HZ-8001     TCGA-HZ-8002 
"PLAU WILD-TYPE" "PLAU WILD-TYPE" "PLAU WILD-TYPE" "PLAU WILD-TYPE" 
    TCGA-HZ-8003     TCGA-HZ-8005     TCGA-HZ-8315     TCGA-HZ-8317 
"PLAU WILD-TYPE" "PLAU WILD-TYPE" "PLAU WILD-TYPE"   "PLAU MUTATED" 
    TCGA-HZ-8636     TCGA-HZ-8638     TCGA-HZ-A49G     TCGA-HZ-A49H 
"PLAU WILD-TYPE" "PLAU WILD-TYPE" "PLAU WILD-TYPE" "PLAU WILD-TYPE" 
    TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-IB-7644     TCGA-IB-7645 
"PLAU WILD-TYPE" "PLAU WILD-TYPE" "PLAU WILD-TYPE" "PLAU WILD-TYPE" 
    TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7651 
"PLAU WILD-TYPE" "PLAU WILD-TYPE"   "PLAU MUTATED"   "PLAU MUTATED" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887 
"PLAU WILD-TYPE" "PLAU WILD-TYPE" "PLAU WILD-TYPE" "PLAU WILD-TYPE" 
    TCGA-IB-7888     TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891 
"PLAU WILD-TYPE" "PLAU WILD-TYPE" "PLAU WILD-TYPE" "PLAU WILD-TYPE" 
    TCGA-IB-7893     TCGA-IB-7897     TCGA-IB-8126     TCGA-IB-8127 
"PLAU WILD-TYPE" "PLAU WILD-TYPE" "PLAU WILD-TYPE" "PLAU WILD-TYPE" 
    TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS 
"PLAU WILD-TYPE" "PLAU WILD-TYPE"   "PLAU MUTATED" "PLAU WILD-TYPE" 
    TCGA-IB-A5ST     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
  "PLAU MUTATED" "PLAU WILD-TYPE" "PLAU WILD-TYPE" "PLAU WILD-TYPE" 
    TCGA-PZ-A5RE     TCGA-Q3-A5QY     TCGA-US-A779     TCGA-US-A77E 
"PLAU WILD-TYPE" "PLAU WILD-TYPE" "PLAU WILD-TYPE" "PLAU WILD-TYPE" 
    TCGA-US-A77J 
"PLAU WILD-TYPE" 
[1] "hr=" "1.6"
D194V2, continuous
                vv
clus             STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  PLAU MUTATED          0        1         0         6         0        0
  PLAU WILD-TYPE        1        3        11        45         2        3
D194V3, multiclass
                vv
clus             T1+T2 T3+T4
  PLAU MUTATED       1     6
  PLAU WILD-TYPE     5    60
D194V4, multiclass
       clus
vv      PLAU MUTATED PLAU WILD-TYPE
  T1+T2            1              5
  T3+T4            6             60
D194V5, binary
                cls
clus              0  1
  PLAU MUTATED    1  6
  PLAU WILD-TYPE 16 48
[1] "tbl2"
                cls
clus             [,1] [,2]
  PLAU MUTATED      1    6
  PLAU WILD-TYPE   16   48
   clus
vv  PLAU MUTATED PLAU WILD-TYPE
  0            1             16
  1            6             48
                vv
clus             M0 M1 MX
  PLAU MUTATED    5  0  2
  PLAU WILD-TYPE 34  3 28
D194V6, multiclass
    clus
vv   PLAU MUTATED PLAU WILD-TYPE
  M0            5             34
  M1            0              3
  MX            2             28
D194V7, binary
                cls
clus              0  1
  PLAU MUTATED    5  2
  PLAU WILD-TYPE 31 34
[1] "tbl2"
                cls
clus             [,1] [,2]
  PLAU MUTATED      5    2
  PLAU WILD-TYPE   31   34
        clus
vv       PLAU MUTATED PLAU WILD-TYPE
  FEMALE            5             31
  MALE              2             34
                vv
clus             PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  PLAU MUTATED                                     7
  PLAU WILD-TYPE                                  58
                vv
clus             PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  PLAU MUTATED                                       0
  PLAU WILD-TYPE                                     4
                vv
clus             PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  PLAU MUTATED                                                  0
  PLAU WILD-TYPE                                                2
D194V8, multiclass
                                                  clus
vv                                                 PLAU MUTATED PLAU WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                         7             58
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                       0              4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA            0              2
D194V9, continuous
D194V10, continuous
                vv
clus             R0 R1 RX
  PLAU MUTATED    3  3  0
  PLAU WILD-TYPE 39 21  2
D194V11, multiclass
    clus
vv   PLAU MUTATED PLAU WILD-TYPE
  R0            3             39
  R1            3             21
  RX            0              2
D194V12, continuous

Clustering(195) Variable = SOS1 MUTATION ANALYSIS
D195V1, survival
                sevent
clus2             0  1
  SOS1 MUTATED    4  5
  SOS1 WILD-TYPE 36 24
  SOS1 MUTATED SOS1 WILD-TYPE 
             9             60 
  SOS1 MUTATED SOS1 WILD-TYPE 
             5             24 
$`SOS1 MUTATED`
TCGA-F2-6879 TCGA-F2-A44H TCGA-FB-A4P6 TCGA-FB-A5VM TCGA-FZ-5920 TCGA-H6-A45N 
       10.98        19.27        11.93         2.47         2.01         7.66 
TCGA-HZ-8636 TCGA-IB-7647 TCGA-IB-7651 
        0.16        21.90        19.82 

$`SOS1 WILD-TYPE`
TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-FB-A4P5 TCGA-FB-A545 
        9.70        11.84         7.10         5.03         0.13        12.66 
TCGA-FB-A78T TCGA-FB-A7DR TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 TCGA-H8-A6C1 
        0.03         5.46        36.20        20.81        12.89        13.02 
TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 
        7.89         0.92         0.66         0.13         0.26        12.13 
TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 
       11.87         0.26         0.62         0.79         0.69         3.95 
TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH 
        0.92         0.53         2.99         0.76         0.95         6.38 
TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7649 TCGA-IB-7652 
        1.51        11.41        49.38         4.77        15.35        15.65 
TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 
       27.98         4.04         3.62        43.79        15.81        19.66 
TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO 
       16.04         3.85        15.98         0.56        17.16        10.82 
TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX 
        9.86         7.20        15.12         0.26         1.35         4.18 
TCGA-OE-A75W TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
        3.62         8.12        13.68        16.80        14.14        18.67 

  SOS1 MUTATED SOS1 WILD-TYPE 
          0.16           0.03 
  SOS1 MUTATED SOS1 WILD-TYPE 
         21.90          49.38 
  SOS1 MUTATED SOS1 WILD-TYPE 
         10.98           7.15 
[1] "0.2 - 21.9 (11.0)" "0.0 - 49.4 (7.2)" 
    TCGA-F2-6879     TCGA-F2-6880     TCGA-F2-7273     TCGA-F2-7276 
  "SOS1 MUTATED" "SOS1 WILD-TYPE" "SOS1 WILD-TYPE" "SOS1 WILD-TYPE" 
    TCGA-F2-A44G     TCGA-F2-A44H     TCGA-FB-A4P5     TCGA-FB-A4P6 
"SOS1 WILD-TYPE"   "SOS1 MUTATED" "SOS1 WILD-TYPE"   "SOS1 MUTATED" 
    TCGA-FB-A545     TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-FB-A7DR 
"SOS1 WILD-TYPE"   "SOS1 MUTATED" "SOS1 WILD-TYPE" "SOS1 WILD-TYPE" 
    TCGA-FZ-5920     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-H6-8124 
  "SOS1 MUTATED" "SOS1 WILD-TYPE" "SOS1 WILD-TYPE" "SOS1 WILD-TYPE" 
    TCGA-H6-A45N     TCGA-H8-A6C1     TCGA-HZ-7289     TCGA-HZ-7918 
  "SOS1 MUTATED" "SOS1 WILD-TYPE" "SOS1 WILD-TYPE" "SOS1 WILD-TYPE" 
    TCGA-HZ-7919     TCGA-HZ-7922     TCGA-HZ-7923     TCGA-HZ-7924 
"SOS1 WILD-TYPE" "SOS1 WILD-TYPE" "SOS1 WILD-TYPE" "SOS1 WILD-TYPE" 
    TCGA-HZ-7925     TCGA-HZ-7926     TCGA-HZ-8001     TCGA-HZ-8002 
"SOS1 WILD-TYPE" "SOS1 WILD-TYPE" "SOS1 WILD-TYPE" "SOS1 WILD-TYPE" 
    TCGA-HZ-8003     TCGA-HZ-8005     TCGA-HZ-8315     TCGA-HZ-8317 
"SOS1 WILD-TYPE" "SOS1 WILD-TYPE" "SOS1 WILD-TYPE" "SOS1 WILD-TYPE" 
    TCGA-HZ-8636     TCGA-HZ-8638     TCGA-HZ-A49G     TCGA-HZ-A49H 
  "SOS1 MUTATED" "SOS1 WILD-TYPE" "SOS1 WILD-TYPE" "SOS1 WILD-TYPE" 
    TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-IB-7644     TCGA-IB-7645 
"SOS1 WILD-TYPE" "SOS1 WILD-TYPE" "SOS1 WILD-TYPE" "SOS1 WILD-TYPE" 
    TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7651 
"SOS1 WILD-TYPE"   "SOS1 MUTATED" "SOS1 WILD-TYPE"   "SOS1 MUTATED" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887 
"SOS1 WILD-TYPE" "SOS1 WILD-TYPE" "SOS1 WILD-TYPE" "SOS1 WILD-TYPE" 
    TCGA-IB-7888     TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891 
"SOS1 WILD-TYPE" "SOS1 WILD-TYPE" "SOS1 WILD-TYPE" "SOS1 WILD-TYPE" 
    TCGA-IB-7893     TCGA-IB-7897     TCGA-IB-8126     TCGA-IB-8127 
"SOS1 WILD-TYPE" "SOS1 WILD-TYPE" "SOS1 WILD-TYPE" "SOS1 WILD-TYPE" 
    TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS 
"SOS1 WILD-TYPE" "SOS1 WILD-TYPE" "SOS1 WILD-TYPE" "SOS1 WILD-TYPE" 
    TCGA-IB-A5ST     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
"SOS1 WILD-TYPE" "SOS1 WILD-TYPE" "SOS1 WILD-TYPE" "SOS1 WILD-TYPE" 
    TCGA-PZ-A5RE     TCGA-Q3-A5QY     TCGA-US-A779     TCGA-US-A77E 
"SOS1 WILD-TYPE" "SOS1 WILD-TYPE" "SOS1 WILD-TYPE" "SOS1 WILD-TYPE" 
    TCGA-US-A77J 
"SOS1 WILD-TYPE" 
    TCGA-F2-6879     TCGA-F2-6880     TCGA-F2-7273     TCGA-F2-7276 
  "SOS1 MUTATED" "SOS1 WILD-TYPE" "SOS1 WILD-TYPE" "SOS1 WILD-TYPE" 
    TCGA-F2-A44G     TCGA-F2-A44H     TCGA-FB-A4P5     TCGA-FB-A4P6 
"SOS1 WILD-TYPE"   "SOS1 MUTATED" "SOS1 WILD-TYPE"   "SOS1 MUTATED" 
    TCGA-FB-A545     TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-FB-A7DR 
"SOS1 WILD-TYPE"   "SOS1 MUTATED" "SOS1 WILD-TYPE" "SOS1 WILD-TYPE" 
    TCGA-FZ-5920     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-H6-8124 
  "SOS1 MUTATED" "SOS1 WILD-TYPE" "SOS1 WILD-TYPE" "SOS1 WILD-TYPE" 
    TCGA-H6-A45N     TCGA-H8-A6C1     TCGA-HZ-7289     TCGA-HZ-7918 
  "SOS1 MUTATED" "SOS1 WILD-TYPE" "SOS1 WILD-TYPE" "SOS1 WILD-TYPE" 
    TCGA-HZ-7919     TCGA-HZ-7922     TCGA-HZ-7923     TCGA-HZ-7924 
"SOS1 WILD-TYPE" "SOS1 WILD-TYPE" "SOS1 WILD-TYPE" "SOS1 WILD-TYPE" 
    TCGA-HZ-7925     TCGA-HZ-7926     TCGA-HZ-8001     TCGA-HZ-8002 
"SOS1 WILD-TYPE" "SOS1 WILD-TYPE" "SOS1 WILD-TYPE" "SOS1 WILD-TYPE" 
    TCGA-HZ-8003     TCGA-HZ-8005     TCGA-HZ-8315     TCGA-HZ-8317 
"SOS1 WILD-TYPE" "SOS1 WILD-TYPE" "SOS1 WILD-TYPE" "SOS1 WILD-TYPE" 
    TCGA-HZ-8636     TCGA-HZ-8638     TCGA-HZ-A49G     TCGA-HZ-A49H 
  "SOS1 MUTATED" "SOS1 WILD-TYPE" "SOS1 WILD-TYPE" "SOS1 WILD-TYPE" 
    TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-IB-7644     TCGA-IB-7645 
"SOS1 WILD-TYPE" "SOS1 WILD-TYPE" "SOS1 WILD-TYPE" "SOS1 WILD-TYPE" 
    TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7651 
"SOS1 WILD-TYPE"   "SOS1 MUTATED" "SOS1 WILD-TYPE"   "SOS1 MUTATED" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887 
"SOS1 WILD-TYPE" "SOS1 WILD-TYPE" "SOS1 WILD-TYPE" "SOS1 WILD-TYPE" 
    TCGA-IB-7888     TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891 
"SOS1 WILD-TYPE" "SOS1 WILD-TYPE" "SOS1 WILD-TYPE" "SOS1 WILD-TYPE" 
    TCGA-IB-7893     TCGA-IB-7897     TCGA-IB-8126     TCGA-IB-8127 
"SOS1 WILD-TYPE" "SOS1 WILD-TYPE" "SOS1 WILD-TYPE" "SOS1 WILD-TYPE" 
    TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS 
"SOS1 WILD-TYPE" "SOS1 WILD-TYPE" "SOS1 WILD-TYPE" "SOS1 WILD-TYPE" 
    TCGA-IB-A5ST     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
"SOS1 WILD-TYPE" "SOS1 WILD-TYPE" "SOS1 WILD-TYPE" "SOS1 WILD-TYPE" 
    TCGA-PZ-A5RE     TCGA-Q3-A5QY     TCGA-US-A779     TCGA-US-A77E 
"SOS1 WILD-TYPE" "SOS1 WILD-TYPE" "SOS1 WILD-TYPE" "SOS1 WILD-TYPE" 
    TCGA-US-A77J 
"SOS1 WILD-TYPE" 
    TCGA-F2-6879     TCGA-F2-6880     TCGA-F2-7273     TCGA-F2-7276 
  "SOS1 MUTATED" "SOS1 WILD-TYPE" "SOS1 WILD-TYPE" "SOS1 WILD-TYPE" 
    TCGA-F2-A44G     TCGA-F2-A44H     TCGA-FB-A4P5     TCGA-FB-A4P6 
"SOS1 WILD-TYPE"   "SOS1 MUTATED" "SOS1 WILD-TYPE"   "SOS1 MUTATED" 
    TCGA-FB-A545     TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-FB-A7DR 
"SOS1 WILD-TYPE"   "SOS1 MUTATED" "SOS1 WILD-TYPE" "SOS1 WILD-TYPE" 
    TCGA-FZ-5920     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-H6-8124 
  "SOS1 MUTATED" "SOS1 WILD-TYPE" "SOS1 WILD-TYPE" "SOS1 WILD-TYPE" 
    TCGA-H6-A45N     TCGA-H8-A6C1     TCGA-HZ-7289     TCGA-HZ-7918 
  "SOS1 MUTATED" "SOS1 WILD-TYPE" "SOS1 WILD-TYPE" "SOS1 WILD-TYPE" 
    TCGA-HZ-7919     TCGA-HZ-7922     TCGA-HZ-7923     TCGA-HZ-7924 
"SOS1 WILD-TYPE" "SOS1 WILD-TYPE" "SOS1 WILD-TYPE" "SOS1 WILD-TYPE" 
    TCGA-HZ-7925     TCGA-HZ-7926     TCGA-HZ-8001     TCGA-HZ-8002 
"SOS1 WILD-TYPE" "SOS1 WILD-TYPE" "SOS1 WILD-TYPE" "SOS1 WILD-TYPE" 
    TCGA-HZ-8003     TCGA-HZ-8005     TCGA-HZ-8315     TCGA-HZ-8317 
"SOS1 WILD-TYPE" "SOS1 WILD-TYPE" "SOS1 WILD-TYPE" "SOS1 WILD-TYPE" 
    TCGA-HZ-8636     TCGA-HZ-8638     TCGA-HZ-A49G     TCGA-HZ-A49H 
  "SOS1 MUTATED" "SOS1 WILD-TYPE" "SOS1 WILD-TYPE" "SOS1 WILD-TYPE" 
    TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-IB-7644     TCGA-IB-7645 
"SOS1 WILD-TYPE" "SOS1 WILD-TYPE" "SOS1 WILD-TYPE" "SOS1 WILD-TYPE" 
    TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7651 
"SOS1 WILD-TYPE"   "SOS1 MUTATED" "SOS1 WILD-TYPE"   "SOS1 MUTATED" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887 
"SOS1 WILD-TYPE" "SOS1 WILD-TYPE" "SOS1 WILD-TYPE" "SOS1 WILD-TYPE" 
    TCGA-IB-7888     TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891 
"SOS1 WILD-TYPE" "SOS1 WILD-TYPE" "SOS1 WILD-TYPE" "SOS1 WILD-TYPE" 
    TCGA-IB-7893     TCGA-IB-7897     TCGA-IB-8126     TCGA-IB-8127 
"SOS1 WILD-TYPE" "SOS1 WILD-TYPE" "SOS1 WILD-TYPE" "SOS1 WILD-TYPE" 
    TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS 
"SOS1 WILD-TYPE" "SOS1 WILD-TYPE" "SOS1 WILD-TYPE" "SOS1 WILD-TYPE" 
    TCGA-IB-A5ST     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
"SOS1 WILD-TYPE" "SOS1 WILD-TYPE" "SOS1 WILD-TYPE" "SOS1 WILD-TYPE" 
    TCGA-PZ-A5RE     TCGA-Q3-A5QY     TCGA-US-A779     TCGA-US-A77E 
"SOS1 WILD-TYPE" "SOS1 WILD-TYPE" "SOS1 WILD-TYPE" "SOS1 WILD-TYPE" 
    TCGA-US-A77J 
"SOS1 WILD-TYPE" 
[1] "hr=" "1.1"
D195V2, continuous
                vv
clus             STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  SOS1 MUTATED          0        1         1         6         0        1
  SOS1 WILD-TYPE        1        3        10        45         2        2
D195V3, multiclass
                vv
clus             T1+T2 T3+T4
  SOS1 MUTATED       1     8
  SOS1 WILD-TYPE     5    58
D195V4, multiclass
       clus
vv      SOS1 MUTATED SOS1 WILD-TYPE
  T1+T2            1              5
  T3+T4            8             58
D195V5, binary
                cls
clus              0  1
  SOS1 MUTATED    3  6
  SOS1 WILD-TYPE 14 48
[1] "tbl2"
                cls
clus             [,1] [,2]
  SOS1 MUTATED      3    6
  SOS1 WILD-TYPE   14   48
   clus
vv  SOS1 MUTATED SOS1 WILD-TYPE
  0            3             14
  1            6             48
                vv
clus             M0 M1 MX
  SOS1 MUTATED    6  1  2
  SOS1 WILD-TYPE 33  2 28
D195V6, multiclass
    clus
vv   SOS1 MUTATED SOS1 WILD-TYPE
  M0            6             33
  M1            1              2
  MX            2             28
D195V7, binary
                cls
clus              0  1
  SOS1 MUTATED    4  5
  SOS1 WILD-TYPE 32 31
[1] "tbl2"
                cls
clus             [,1] [,2]
  SOS1 MUTATED      4    5
  SOS1 WILD-TYPE   32   31
        clus
vv       SOS1 MUTATED SOS1 WILD-TYPE
  FEMALE            4             32
  MALE              5             31
                vv
clus             PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  SOS1 MUTATED                                     7
  SOS1 WILD-TYPE                                  58
                vv
clus             PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  SOS1 MUTATED                                       1
  SOS1 WILD-TYPE                                     3
                vv
clus             PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  SOS1 MUTATED                                                  0
  SOS1 WILD-TYPE                                                2
D195V8, multiclass
                                                  clus
vv                                                 SOS1 MUTATED SOS1 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                         7             58
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                       1              3
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA            0              2
D195V9, continuous
D195V10, continuous
                vv
clus             R0 R1 RX
  SOS1 MUTATED    5  2  0
  SOS1 WILD-TYPE 37 22  2
D195V11, multiclass
    clus
vv   SOS1 MUTATED SOS1 WILD-TYPE
  R0            5             37
  R1            2             22
  RX            0              2
D195V12, continuous

Clustering(196) Variable = DPYS MUTATION ANALYSIS
D196V1, survival
                sevent
clus2             0  1
  DPYS MUTATED    5  2
  DPYS WILD-TYPE 35 27
  DPYS MUTATED DPYS WILD-TYPE 
             7             62 
  DPYS MUTATED DPYS WILD-TYPE 
             2             27 
$`DPYS MUTATED`
TCGA-F2-A44G TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-HZ-A49G TCGA-IB-7651 
        5.03        11.93        12.66         2.47         0.76        19.82 
TCGA-IB-8127 
       17.16 

$`DPYS WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44H TCGA-FB-A4P5 
       10.98         9.70        11.84         7.10        19.27         0.13 
TCGA-FB-A78T TCGA-FB-A7DR TCGA-FZ-5920 TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 
        0.03         5.46         2.01        36.20        20.81        12.89 
TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7922 
        7.66        13.02         7.89         0.92         0.66         0.13 
TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 
        0.26        12.13        11.87         0.26         0.62         0.79 
TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8636 TCGA-HZ-8638 
        0.69         3.95         0.92         0.53         0.16         2.99 
TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7646 
        0.95         6.38         1.51        11.41        49.38         4.77 
TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 
       21.90        15.35        15.65        27.98         4.04         3.62 
TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-7897 
       43.79        15.81        19.66        16.04         3.85        15.98 
TCGA-IB-8126 TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST 
        0.56        10.82         9.86         7.20        15.12         0.26 
TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 
        1.35         4.18         3.62         8.12        13.68        16.80 
TCGA-US-A77E TCGA-US-A77J 
       14.14        18.67 

  DPYS MUTATED DPYS WILD-TYPE 
          0.76           0.03 
  DPYS MUTATED DPYS WILD-TYPE 
         19.82          49.38 
  DPYS MUTATED DPYS WILD-TYPE 
         11.93           7.43 
[1] "0.8 - 19.8 (11.9)" "0.0 - 49.4 (7.4)" 
    TCGA-F2-6879     TCGA-F2-6880     TCGA-F2-7273     TCGA-F2-7276 
"DPYS WILD-TYPE" "DPYS WILD-TYPE" "DPYS WILD-TYPE" "DPYS WILD-TYPE" 
    TCGA-F2-A44G     TCGA-F2-A44H     TCGA-FB-A4P5     TCGA-FB-A4P6 
  "DPYS MUTATED" "DPYS WILD-TYPE" "DPYS WILD-TYPE"   "DPYS MUTATED" 
    TCGA-FB-A545     TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-FB-A7DR 
  "DPYS MUTATED"   "DPYS MUTATED" "DPYS WILD-TYPE" "DPYS WILD-TYPE" 
    TCGA-FZ-5920     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-H6-8124 
"DPYS WILD-TYPE" "DPYS WILD-TYPE" "DPYS WILD-TYPE" "DPYS WILD-TYPE" 
    TCGA-H6-A45N     TCGA-H8-A6C1     TCGA-HZ-7289     TCGA-HZ-7918 
"DPYS WILD-TYPE" "DPYS WILD-TYPE" "DPYS WILD-TYPE" "DPYS WILD-TYPE" 
    TCGA-HZ-7919     TCGA-HZ-7922     TCGA-HZ-7923     TCGA-HZ-7924 
"DPYS WILD-TYPE" "DPYS WILD-TYPE" "DPYS WILD-TYPE" "DPYS WILD-TYPE" 
    TCGA-HZ-7925     TCGA-HZ-7926     TCGA-HZ-8001     TCGA-HZ-8002 
"DPYS WILD-TYPE" "DPYS WILD-TYPE" "DPYS WILD-TYPE" "DPYS WILD-TYPE" 
    TCGA-HZ-8003     TCGA-HZ-8005     TCGA-HZ-8315     TCGA-HZ-8317 
"DPYS WILD-TYPE" "DPYS WILD-TYPE" "DPYS WILD-TYPE" "DPYS WILD-TYPE" 
    TCGA-HZ-8636     TCGA-HZ-8638     TCGA-HZ-A49G     TCGA-HZ-A49H 
"DPYS WILD-TYPE" "DPYS WILD-TYPE"   "DPYS MUTATED" "DPYS WILD-TYPE" 
    TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-IB-7644     TCGA-IB-7645 
"DPYS WILD-TYPE" "DPYS WILD-TYPE" "DPYS WILD-TYPE" "DPYS WILD-TYPE" 
    TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7651 
"DPYS WILD-TYPE" "DPYS WILD-TYPE" "DPYS WILD-TYPE"   "DPYS MUTATED" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887 
"DPYS WILD-TYPE" "DPYS WILD-TYPE" "DPYS WILD-TYPE" "DPYS WILD-TYPE" 
    TCGA-IB-7888     TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891 
"DPYS WILD-TYPE" "DPYS WILD-TYPE" "DPYS WILD-TYPE" "DPYS WILD-TYPE" 
    TCGA-IB-7893     TCGA-IB-7897     TCGA-IB-8126     TCGA-IB-8127 
"DPYS WILD-TYPE" "DPYS WILD-TYPE" "DPYS WILD-TYPE"   "DPYS MUTATED" 
    TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS 
"DPYS WILD-TYPE" "DPYS WILD-TYPE" "DPYS WILD-TYPE" "DPYS WILD-TYPE" 
    TCGA-IB-A5ST     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
"DPYS WILD-TYPE" "DPYS WILD-TYPE" "DPYS WILD-TYPE" "DPYS WILD-TYPE" 
    TCGA-PZ-A5RE     TCGA-Q3-A5QY     TCGA-US-A779     TCGA-US-A77E 
"DPYS WILD-TYPE" "DPYS WILD-TYPE" "DPYS WILD-TYPE" "DPYS WILD-TYPE" 
    TCGA-US-A77J 
"DPYS WILD-TYPE" 
    TCGA-F2-6879     TCGA-F2-6880     TCGA-F2-7273     TCGA-F2-7276 
"DPYS WILD-TYPE" "DPYS WILD-TYPE" "DPYS WILD-TYPE" "DPYS WILD-TYPE" 
    TCGA-F2-A44G     TCGA-F2-A44H     TCGA-FB-A4P5     TCGA-FB-A4P6 
  "DPYS MUTATED" "DPYS WILD-TYPE" "DPYS WILD-TYPE"   "DPYS MUTATED" 
    TCGA-FB-A545     TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-FB-A7DR 
  "DPYS MUTATED"   "DPYS MUTATED" "DPYS WILD-TYPE" "DPYS WILD-TYPE" 
    TCGA-FZ-5920     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-H6-8124 
"DPYS WILD-TYPE" "DPYS WILD-TYPE" "DPYS WILD-TYPE" "DPYS WILD-TYPE" 
    TCGA-H6-A45N     TCGA-H8-A6C1     TCGA-HZ-7289     TCGA-HZ-7918 
"DPYS WILD-TYPE" "DPYS WILD-TYPE" "DPYS WILD-TYPE" "DPYS WILD-TYPE" 
    TCGA-HZ-7919     TCGA-HZ-7922     TCGA-HZ-7923     TCGA-HZ-7924 
"DPYS WILD-TYPE" "DPYS WILD-TYPE" "DPYS WILD-TYPE" "DPYS WILD-TYPE" 
    TCGA-HZ-7925     TCGA-HZ-7926     TCGA-HZ-8001     TCGA-HZ-8002 
"DPYS WILD-TYPE" "DPYS WILD-TYPE" "DPYS WILD-TYPE" "DPYS WILD-TYPE" 
    TCGA-HZ-8003     TCGA-HZ-8005     TCGA-HZ-8315     TCGA-HZ-8317 
"DPYS WILD-TYPE" "DPYS WILD-TYPE" "DPYS WILD-TYPE" "DPYS WILD-TYPE" 
    TCGA-HZ-8636     TCGA-HZ-8638     TCGA-HZ-A49G     TCGA-HZ-A49H 
"DPYS WILD-TYPE" "DPYS WILD-TYPE"   "DPYS MUTATED" "DPYS WILD-TYPE" 
    TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-IB-7644     TCGA-IB-7645 
"DPYS WILD-TYPE" "DPYS WILD-TYPE" "DPYS WILD-TYPE" "DPYS WILD-TYPE" 
    TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7651 
"DPYS WILD-TYPE" "DPYS WILD-TYPE" "DPYS WILD-TYPE"   "DPYS MUTATED" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887 
"DPYS WILD-TYPE" "DPYS WILD-TYPE" "DPYS WILD-TYPE" "DPYS WILD-TYPE" 
    TCGA-IB-7888     TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891 
"DPYS WILD-TYPE" "DPYS WILD-TYPE" "DPYS WILD-TYPE" "DPYS WILD-TYPE" 
    TCGA-IB-7893     TCGA-IB-7897     TCGA-IB-8126     TCGA-IB-8127 
"DPYS WILD-TYPE" "DPYS WILD-TYPE" "DPYS WILD-TYPE"   "DPYS MUTATED" 
    TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS 
"DPYS WILD-TYPE" "DPYS WILD-TYPE" "DPYS WILD-TYPE" "DPYS WILD-TYPE" 
    TCGA-IB-A5ST     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
"DPYS WILD-TYPE" "DPYS WILD-TYPE" "DPYS WILD-TYPE" "DPYS WILD-TYPE" 
    TCGA-PZ-A5RE     TCGA-Q3-A5QY     TCGA-US-A779     TCGA-US-A77E 
"DPYS WILD-TYPE" "DPYS WILD-TYPE" "DPYS WILD-TYPE" "DPYS WILD-TYPE" 
    TCGA-US-A77J 
"DPYS WILD-TYPE" 
    TCGA-F2-6879     TCGA-F2-6880     TCGA-F2-7273     TCGA-F2-7276 
"DPYS WILD-TYPE" "DPYS WILD-TYPE" "DPYS WILD-TYPE" "DPYS WILD-TYPE" 
    TCGA-F2-A44G     TCGA-F2-A44H     TCGA-FB-A4P5     TCGA-FB-A4P6 
  "DPYS MUTATED" "DPYS WILD-TYPE" "DPYS WILD-TYPE"   "DPYS MUTATED" 
    TCGA-FB-A545     TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-FB-A7DR 
  "DPYS MUTATED"   "DPYS MUTATED" "DPYS WILD-TYPE" "DPYS WILD-TYPE" 
    TCGA-FZ-5920     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-H6-8124 
"DPYS WILD-TYPE" "DPYS WILD-TYPE" "DPYS WILD-TYPE" "DPYS WILD-TYPE" 
    TCGA-H6-A45N     TCGA-H8-A6C1     TCGA-HZ-7289     TCGA-HZ-7918 
"DPYS WILD-TYPE" "DPYS WILD-TYPE" "DPYS WILD-TYPE" "DPYS WILD-TYPE" 
    TCGA-HZ-7919     TCGA-HZ-7922     TCGA-HZ-7923     TCGA-HZ-7924 
"DPYS WILD-TYPE" "DPYS WILD-TYPE" "DPYS WILD-TYPE" "DPYS WILD-TYPE" 
    TCGA-HZ-7925     TCGA-HZ-7926     TCGA-HZ-8001     TCGA-HZ-8002 
"DPYS WILD-TYPE" "DPYS WILD-TYPE" "DPYS WILD-TYPE" "DPYS WILD-TYPE" 
    TCGA-HZ-8003     TCGA-HZ-8005     TCGA-HZ-8315     TCGA-HZ-8317 
"DPYS WILD-TYPE" "DPYS WILD-TYPE" "DPYS WILD-TYPE" "DPYS WILD-TYPE" 
    TCGA-HZ-8636     TCGA-HZ-8638     TCGA-HZ-A49G     TCGA-HZ-A49H 
"DPYS WILD-TYPE" "DPYS WILD-TYPE"   "DPYS MUTATED" "DPYS WILD-TYPE" 
    TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-IB-7644     TCGA-IB-7645 
"DPYS WILD-TYPE" "DPYS WILD-TYPE" "DPYS WILD-TYPE" "DPYS WILD-TYPE" 
    TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7651 
"DPYS WILD-TYPE" "DPYS WILD-TYPE" "DPYS WILD-TYPE"   "DPYS MUTATED" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887 
"DPYS WILD-TYPE" "DPYS WILD-TYPE" "DPYS WILD-TYPE" "DPYS WILD-TYPE" 
    TCGA-IB-7888     TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891 
"DPYS WILD-TYPE" "DPYS WILD-TYPE" "DPYS WILD-TYPE" "DPYS WILD-TYPE" 
    TCGA-IB-7893     TCGA-IB-7897     TCGA-IB-8126     TCGA-IB-8127 
"DPYS WILD-TYPE" "DPYS WILD-TYPE" "DPYS WILD-TYPE"   "DPYS MUTATED" 
    TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS 
"DPYS WILD-TYPE" "DPYS WILD-TYPE" "DPYS WILD-TYPE" "DPYS WILD-TYPE" 
    TCGA-IB-A5ST     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
"DPYS WILD-TYPE" "DPYS WILD-TYPE" "DPYS WILD-TYPE" "DPYS WILD-TYPE" 
    TCGA-PZ-A5RE     TCGA-Q3-A5QY     TCGA-US-A779     TCGA-US-A77E 
"DPYS WILD-TYPE" "DPYS WILD-TYPE" "DPYS WILD-TYPE" "DPYS WILD-TYPE" 
    TCGA-US-A77J 
"DPYS WILD-TYPE" 
[1] "hr=" "1.5"
D196V2, continuous
                vv
clus             STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  DPYS MUTATED          0        2         0         6         0        0
  DPYS WILD-TYPE        1        2        11        45         2        3
D196V3, multiclass
                vv
clus             T1+T2 T3+T4
  DPYS MUTATED       3     5
  DPYS WILD-TYPE     3    61
D196V4, multiclass
       clus
vv      DPYS MUTATED DPYS WILD-TYPE
  T1+T2            3              3
  T3+T4            5             61
D196V5, binary
                cls
clus              0  1
  DPYS MUTATED    2  6
  DPYS WILD-TYPE 15 48
[1] "tbl2"
                cls
clus             [,1] [,2]
  DPYS MUTATED      2    6
  DPYS WILD-TYPE   15   48
   clus
vv  DPYS MUTATED DPYS WILD-TYPE
  0            2             15
  1            6             48
                vv
clus             M0 M1 MX
  DPYS MUTATED    5  0  3
  DPYS WILD-TYPE 34  3 27
D196V6, multiclass
    clus
vv   DPYS MUTATED DPYS WILD-TYPE
  M0            5             34
  M1            0              3
  MX            3             27
D196V7, binary
                cls
clus              0  1
  DPYS MUTATED    4  4
  DPYS WILD-TYPE 32 32
[1] "tbl2"
                cls
clus             [,1] [,2]
  DPYS MUTATED      4    4
  DPYS WILD-TYPE   32   32
        clus
vv       DPYS MUTATED DPYS WILD-TYPE
  FEMALE            4             32
  MALE              4             32
                vv
clus             PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  DPYS MUTATED                                     8
  DPYS WILD-TYPE                                  57
                vv
clus             PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  DPYS MUTATED                                       0
  DPYS WILD-TYPE                                     4
                vv
clus             PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  DPYS MUTATED                                                  0
  DPYS WILD-TYPE                                                2
D196V8, multiclass
                                                  clus
vv                                                 DPYS MUTATED DPYS WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                         8             57
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                       0              4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA            0              2
D196V9, continuous
D196V10, continuous
                vv
clus             R0 R1 RX
  DPYS MUTATED    3  3  0
  DPYS WILD-TYPE 39 21  2
D196V11, multiclass
    clus
vv   DPYS MUTATED DPYS WILD-TYPE
  R0            3             39
  R1            3             21
  RX            0              2
D196V12, continuous

Clustering(197) Variable = CPLX3 MUTATION ANALYSIS
D197V1, survival
                 sevent
clus2              0  1
  CPLX3 MUTATED    3  1
  CPLX3 WILD-TYPE 37 28
  CPLX3 MUTATED CPLX3 WILD-TYPE 
              4              65 
  CPLX3 MUTATED CPLX3 WILD-TYPE 
              1              28 
$`CPLX3 MUTATED`
TCGA-F2-6880 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-IB-7889 
        9.70         0.79         0.69        15.81 

$`CPLX3 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H TCGA-FB-A4P5 
       10.98        11.84         7.10         5.03        19.27         0.13 
TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR TCGA-FZ-5920 
       11.93        12.66         2.47         0.03         5.46         2.01 
TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7289 
       36.20        20.81        12.89         7.66        13.02         7.89 
TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 
        0.92         0.66         0.13         0.26        12.13        11.87 
TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8636 
        0.26         0.62         3.95         0.92         0.53         0.16 
TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 
        2.99         0.76         0.95         6.38         1.51        11.41 
TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7651 TCGA-IB-7652 
       49.38         4.77        21.90        15.35        19.82        15.65 
TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7890 TCGA-IB-7891 
       27.98         4.04         3.62        43.79        19.66        16.04 
TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP 
        3.85        15.98         0.56        17.16        10.82         9.86 
TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W 
        7.20        15.12         0.26         1.35         4.18         3.62 
TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
        8.12        13.68        16.80        14.14        18.67 

  CPLX3 MUTATED CPLX3 WILD-TYPE 
           0.69            0.03 
  CPLX3 MUTATED CPLX3 WILD-TYPE 
          15.81           49.38 
  CPLX3 MUTATED CPLX3 WILD-TYPE 
          5.245           7.660 
[1] "0.7 - 15.8 (5.2)" "0.0 - 49.4 (7.7)"
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"CPLX3 WILD-TYPE"   "CPLX3 MUTATED" "CPLX3 WILD-TYPE" "CPLX3 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"CPLX3 WILD-TYPE" "CPLX3 WILD-TYPE" "CPLX3 WILD-TYPE" "CPLX3 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"CPLX3 WILD-TYPE" "CPLX3 WILD-TYPE" "CPLX3 WILD-TYPE" "CPLX3 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"CPLX3 WILD-TYPE" "CPLX3 WILD-TYPE" "CPLX3 WILD-TYPE" "CPLX3 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"CPLX3 WILD-TYPE" "CPLX3 WILD-TYPE" "CPLX3 WILD-TYPE" "CPLX3 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"CPLX3 WILD-TYPE" "CPLX3 WILD-TYPE" "CPLX3 WILD-TYPE" "CPLX3 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"CPLX3 WILD-TYPE" "CPLX3 WILD-TYPE" "CPLX3 WILD-TYPE"   "CPLX3 MUTATED" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
  "CPLX3 MUTATED" "CPLX3 WILD-TYPE" "CPLX3 WILD-TYPE" "CPLX3 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"CPLX3 WILD-TYPE" "CPLX3 WILD-TYPE" "CPLX3 WILD-TYPE" "CPLX3 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"CPLX3 WILD-TYPE" "CPLX3 WILD-TYPE" "CPLX3 WILD-TYPE" "CPLX3 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"CPLX3 WILD-TYPE" "CPLX3 WILD-TYPE" "CPLX3 WILD-TYPE" "CPLX3 WILD-TYPE" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"CPLX3 WILD-TYPE" "CPLX3 WILD-TYPE" "CPLX3 WILD-TYPE" "CPLX3 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"CPLX3 WILD-TYPE"   "CPLX3 MUTATED" "CPLX3 WILD-TYPE" "CPLX3 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"CPLX3 WILD-TYPE" "CPLX3 WILD-TYPE" "CPLX3 WILD-TYPE" "CPLX3 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"CPLX3 WILD-TYPE" "CPLX3 WILD-TYPE" "CPLX3 WILD-TYPE" "CPLX3 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"CPLX3 WILD-TYPE" "CPLX3 WILD-TYPE" "CPLX3 WILD-TYPE" "CPLX3 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"CPLX3 WILD-TYPE" "CPLX3 WILD-TYPE" "CPLX3 WILD-TYPE" "CPLX3 WILD-TYPE" 
     TCGA-US-A77J 
"CPLX3 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"CPLX3 WILD-TYPE"   "CPLX3 MUTATED" "CPLX3 WILD-TYPE" "CPLX3 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"CPLX3 WILD-TYPE" "CPLX3 WILD-TYPE" "CPLX3 WILD-TYPE" "CPLX3 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"CPLX3 WILD-TYPE" "CPLX3 WILD-TYPE" "CPLX3 WILD-TYPE" "CPLX3 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"CPLX3 WILD-TYPE" "CPLX3 WILD-TYPE" "CPLX3 WILD-TYPE" "CPLX3 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"CPLX3 WILD-TYPE" "CPLX3 WILD-TYPE" "CPLX3 WILD-TYPE" "CPLX3 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"CPLX3 WILD-TYPE" "CPLX3 WILD-TYPE" "CPLX3 WILD-TYPE" "CPLX3 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"CPLX3 WILD-TYPE" "CPLX3 WILD-TYPE" "CPLX3 WILD-TYPE"   "CPLX3 MUTATED" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
  "CPLX3 MUTATED" "CPLX3 WILD-TYPE" "CPLX3 WILD-TYPE" "CPLX3 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"CPLX3 WILD-TYPE" "CPLX3 WILD-TYPE" "CPLX3 WILD-TYPE" "CPLX3 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"CPLX3 WILD-TYPE" "CPLX3 WILD-TYPE" "CPLX3 WILD-TYPE" "CPLX3 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"CPLX3 WILD-TYPE" "CPLX3 WILD-TYPE" "CPLX3 WILD-TYPE" "CPLX3 WILD-TYPE" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"CPLX3 WILD-TYPE" "CPLX3 WILD-TYPE" "CPLX3 WILD-TYPE" "CPLX3 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"CPLX3 WILD-TYPE"   "CPLX3 MUTATED" "CPLX3 WILD-TYPE" "CPLX3 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"CPLX3 WILD-TYPE" "CPLX3 WILD-TYPE" "CPLX3 WILD-TYPE" "CPLX3 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"CPLX3 WILD-TYPE" "CPLX3 WILD-TYPE" "CPLX3 WILD-TYPE" "CPLX3 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"CPLX3 WILD-TYPE" "CPLX3 WILD-TYPE" "CPLX3 WILD-TYPE" "CPLX3 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"CPLX3 WILD-TYPE" "CPLX3 WILD-TYPE" "CPLX3 WILD-TYPE" "CPLX3 WILD-TYPE" 
     TCGA-US-A77J 
"CPLX3 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"CPLX3 WILD-TYPE"   "CPLX3 MUTATED" "CPLX3 WILD-TYPE" "CPLX3 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"CPLX3 WILD-TYPE" "CPLX3 WILD-TYPE" "CPLX3 WILD-TYPE" "CPLX3 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"CPLX3 WILD-TYPE" "CPLX3 WILD-TYPE" "CPLX3 WILD-TYPE" "CPLX3 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"CPLX3 WILD-TYPE" "CPLX3 WILD-TYPE" "CPLX3 WILD-TYPE" "CPLX3 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"CPLX3 WILD-TYPE" "CPLX3 WILD-TYPE" "CPLX3 WILD-TYPE" "CPLX3 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"CPLX3 WILD-TYPE" "CPLX3 WILD-TYPE" "CPLX3 WILD-TYPE" "CPLX3 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"CPLX3 WILD-TYPE" "CPLX3 WILD-TYPE" "CPLX3 WILD-TYPE"   "CPLX3 MUTATED" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
  "CPLX3 MUTATED" "CPLX3 WILD-TYPE" "CPLX3 WILD-TYPE" "CPLX3 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"CPLX3 WILD-TYPE" "CPLX3 WILD-TYPE" "CPLX3 WILD-TYPE" "CPLX3 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"CPLX3 WILD-TYPE" "CPLX3 WILD-TYPE" "CPLX3 WILD-TYPE" "CPLX3 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"CPLX3 WILD-TYPE" "CPLX3 WILD-TYPE" "CPLX3 WILD-TYPE" "CPLX3 WILD-TYPE" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"CPLX3 WILD-TYPE" "CPLX3 WILD-TYPE" "CPLX3 WILD-TYPE" "CPLX3 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"CPLX3 WILD-TYPE"   "CPLX3 MUTATED" "CPLX3 WILD-TYPE" "CPLX3 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"CPLX3 WILD-TYPE" "CPLX3 WILD-TYPE" "CPLX3 WILD-TYPE" "CPLX3 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"CPLX3 WILD-TYPE" "CPLX3 WILD-TYPE" "CPLX3 WILD-TYPE" "CPLX3 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"CPLX3 WILD-TYPE" "CPLX3 WILD-TYPE" "CPLX3 WILD-TYPE" "CPLX3 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"CPLX3 WILD-TYPE" "CPLX3 WILD-TYPE" "CPLX3 WILD-TYPE" "CPLX3 WILD-TYPE" 
     TCGA-US-A77J 
"CPLX3 WILD-TYPE" 
[1] "hr=" "1.1"
D197V2, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  CPLX3 MUTATED          0        0         0         4         0        0
  CPLX3 WILD-TYPE        1        4        11        47         2        3
D197V3, multiclass
                 vv
clus              T1+T2 T3+T4
  CPLX3 MUTATED       0     4
  CPLX3 WILD-TYPE     6    62
D197V4, multiclass
       clus
vv      CPLX3 MUTATED CPLX3 WILD-TYPE
  T1+T2             0               6
  T3+T4             4              62
D197V5, binary
                 cls
clus               0  1
  CPLX3 MUTATED    0  4
  CPLX3 WILD-TYPE 17 50
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CPLX3 MUTATED      0    4
  CPLX3 WILD-TYPE   17   50
   clus
vv  CPLX3 MUTATED CPLX3 WILD-TYPE
  0             0              17
  1             4              50
                 vv
clus              M0 M1 MX
  CPLX3 MUTATED    2  0  2
  CPLX3 WILD-TYPE 37  3 28
D197V6, multiclass
    clus
vv   CPLX3 MUTATED CPLX3 WILD-TYPE
  M0             2              37
  M1             0               3
  MX             2              28
D197V7, binary
                 cls
clus               0  1
  CPLX3 MUTATED    2  2
  CPLX3 WILD-TYPE 34 34
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CPLX3 MUTATED      2    2
  CPLX3 WILD-TYPE   34   34
        clus
vv       CPLX3 MUTATED CPLX3 WILD-TYPE
  FEMALE             2              34
  MALE               2              34
                 vv
clus              PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  CPLX3 MUTATED                                     4
  CPLX3 WILD-TYPE                                  61
                 vv
clus              PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  CPLX3 MUTATED                                       0
  CPLX3 WILD-TYPE                                     4
                 vv
clus              PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  CPLX3 MUTATED                                                  0
  CPLX3 WILD-TYPE                                                2
D197V8, multiclass
                                                  clus
vv                                                 CPLX3 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                          4
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                        0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA             0
                                                  clus
vv                                                 CPLX3 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                           61
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                          4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA               2
D197V9, continuous
[1] "Remove cluster labels:" "CPLX3 MUTATED"         
clus
  CPLX3 MUTATED CPLX3 WILD-TYPE 
              1              21 
     TCGA-FB-A4P5      TCGA-FB-A4P6      TCGA-FB-A5VM      TCGA-FB-A78T 
"CPLX3 WILD-TYPE" "CPLX3 WILD-TYPE" "CPLX3 WILD-TYPE" "CPLX3 WILD-TYPE" 
     TCGA-FB-A7DR      TCGA-H6-8124      TCGA-H6-A45N      TCGA-H8-A6C1 
"CPLX3 WILD-TYPE" "CPLX3 WILD-TYPE" "CPLX3 WILD-TYPE" "CPLX3 WILD-TYPE" 
     TCGA-IB-7644      TCGA-IB-7649      TCGA-IB-7651      TCGA-IB-7885 
"CPLX3 WILD-TYPE" "CPLX3 WILD-TYPE" "CPLX3 WILD-TYPE" "CPLX3 WILD-TYPE" 
     TCGA-IB-7886      TCGA-IB-7887      TCGA-IB-7891      TCGA-IB-8126 
"CPLX3 WILD-TYPE" "CPLX3 WILD-TYPE" "CPLX3 WILD-TYPE" "CPLX3 WILD-TYPE" 
     TCGA-IB-8127      TCGA-IB-A5SS      TCGA-IB-A6UG      TCGA-LB-A7SX 
"CPLX3 WILD-TYPE" "CPLX3 WILD-TYPE" "CPLX3 WILD-TYPE" "CPLX3 WILD-TYPE" 
     TCGA-OE-A75W 
"CPLX3 WILD-TYPE" 
D197V10, continuous
                 vv
clus              R0 R1 RX
  CPLX3 MUTATED    4  0  0
  CPLX3 WILD-TYPE 38 24  2
D197V11, multiclass
    clus
vv   CPLX3 MUTATED CPLX3 WILD-TYPE
  R0             4              38
  R1             0              24
  RX             0               2
D197V12, continuous

Clustering(198) Variable = RUNX2 MUTATION ANALYSIS
D198V1, survival
                 sevent
clus2              0  1
  RUNX2 MUTATED    7  3
  RUNX2 WILD-TYPE 33 26
  RUNX2 MUTATED RUNX2 WILD-TYPE 
             10              59 
  RUNX2 MUTATED RUNX2 WILD-TYPE 
              3              26 
$`RUNX2 MUTATED`
TCGA-H6-8124 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-8002 TCGA-HZ-8638 TCGA-HZ-A4BH 
       12.89         0.26        12.13         0.79         2.99         6.38 
TCGA-IB-7651 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-8126 
       19.82        43.79        15.81         0.56 

$`RUNX2 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P5 TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR 
        0.13        11.93        12.66         2.47         0.03         5.46 
TCGA-FZ-5920 TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7289 
        2.01        36.20        20.81         7.66        13.02         7.89 
TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8001 
        0.92         0.66         0.13        11.87         0.26         0.62 
TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8636 TCGA-HZ-A49G 
        0.69         3.95         0.92         0.53         0.16         0.76 
TCGA-HZ-A49H TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 
        0.95         1.51        11.41        49.38         4.77        21.90 
TCGA-IB-7649 TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7890 
       15.35        15.65        27.98         4.04         3.62        19.66 
TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP 
       16.04         3.85        15.98        17.16        10.82         9.86 
TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W 
        7.20        15.12         0.26         1.35         4.18         3.62 
TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
        8.12        13.68        16.80        14.14        18.67 

  RUNX2 MUTATED RUNX2 WILD-TYPE 
           0.26            0.03 
  RUNX2 MUTATED RUNX2 WILD-TYPE 
          43.79           49.38 
  RUNX2 MUTATED RUNX2 WILD-TYPE 
          9.255           7.660 
[1] "0.3 - 43.8 (9.3)" "0.0 - 49.4 (7.7)"
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"RUNX2 WILD-TYPE" "RUNX2 WILD-TYPE" "RUNX2 WILD-TYPE" "RUNX2 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"RUNX2 WILD-TYPE" "RUNX2 WILD-TYPE" "RUNX2 WILD-TYPE" "RUNX2 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"RUNX2 WILD-TYPE" "RUNX2 WILD-TYPE" "RUNX2 WILD-TYPE" "RUNX2 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"RUNX2 WILD-TYPE" "RUNX2 WILD-TYPE" "RUNX2 WILD-TYPE"   "RUNX2 MUTATED" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"RUNX2 WILD-TYPE" "RUNX2 WILD-TYPE" "RUNX2 WILD-TYPE" "RUNX2 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"RUNX2 WILD-TYPE" "RUNX2 WILD-TYPE"   "RUNX2 MUTATED"   "RUNX2 MUTATED" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"RUNX2 WILD-TYPE" "RUNX2 WILD-TYPE" "RUNX2 WILD-TYPE"   "RUNX2 MUTATED" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"RUNX2 WILD-TYPE" "RUNX2 WILD-TYPE" "RUNX2 WILD-TYPE" "RUNX2 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"RUNX2 WILD-TYPE"   "RUNX2 MUTATED" "RUNX2 WILD-TYPE" "RUNX2 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
  "RUNX2 MUTATED" "RUNX2 WILD-TYPE" "RUNX2 WILD-TYPE" "RUNX2 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"RUNX2 WILD-TYPE" "RUNX2 WILD-TYPE" "RUNX2 WILD-TYPE"   "RUNX2 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"RUNX2 WILD-TYPE" "RUNX2 WILD-TYPE" "RUNX2 WILD-TYPE" "RUNX2 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
  "RUNX2 MUTATED"   "RUNX2 MUTATED" "RUNX2 WILD-TYPE" "RUNX2 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"RUNX2 WILD-TYPE" "RUNX2 WILD-TYPE"   "RUNX2 MUTATED" "RUNX2 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"RUNX2 WILD-TYPE" "RUNX2 WILD-TYPE" "RUNX2 WILD-TYPE" "RUNX2 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"RUNX2 WILD-TYPE" "RUNX2 WILD-TYPE" "RUNX2 WILD-TYPE" "RUNX2 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"RUNX2 WILD-TYPE" "RUNX2 WILD-TYPE" "RUNX2 WILD-TYPE" "RUNX2 WILD-TYPE" 
     TCGA-US-A77J 
"RUNX2 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"RUNX2 WILD-TYPE" "RUNX2 WILD-TYPE" "RUNX2 WILD-TYPE" "RUNX2 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"RUNX2 WILD-TYPE" "RUNX2 WILD-TYPE" "RUNX2 WILD-TYPE" "RUNX2 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"RUNX2 WILD-TYPE" "RUNX2 WILD-TYPE" "RUNX2 WILD-TYPE" "RUNX2 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"RUNX2 WILD-TYPE" "RUNX2 WILD-TYPE" "RUNX2 WILD-TYPE"   "RUNX2 MUTATED" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"RUNX2 WILD-TYPE" "RUNX2 WILD-TYPE" "RUNX2 WILD-TYPE" "RUNX2 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"RUNX2 WILD-TYPE" "RUNX2 WILD-TYPE"   "RUNX2 MUTATED"   "RUNX2 MUTATED" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"RUNX2 WILD-TYPE" "RUNX2 WILD-TYPE" "RUNX2 WILD-TYPE"   "RUNX2 MUTATED" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"RUNX2 WILD-TYPE" "RUNX2 WILD-TYPE" "RUNX2 WILD-TYPE" "RUNX2 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"RUNX2 WILD-TYPE"   "RUNX2 MUTATED" "RUNX2 WILD-TYPE" "RUNX2 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
  "RUNX2 MUTATED" "RUNX2 WILD-TYPE" "RUNX2 WILD-TYPE" "RUNX2 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"RUNX2 WILD-TYPE" "RUNX2 WILD-TYPE" "RUNX2 WILD-TYPE"   "RUNX2 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"RUNX2 WILD-TYPE" "RUNX2 WILD-TYPE" "RUNX2 WILD-TYPE" "RUNX2 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
  "RUNX2 MUTATED"   "RUNX2 MUTATED" "RUNX2 WILD-TYPE" "RUNX2 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"RUNX2 WILD-TYPE" "RUNX2 WILD-TYPE"   "RUNX2 MUTATED" "RUNX2 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"RUNX2 WILD-TYPE" "RUNX2 WILD-TYPE" "RUNX2 WILD-TYPE" "RUNX2 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"RUNX2 WILD-TYPE" "RUNX2 WILD-TYPE" "RUNX2 WILD-TYPE" "RUNX2 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"RUNX2 WILD-TYPE" "RUNX2 WILD-TYPE" "RUNX2 WILD-TYPE" "RUNX2 WILD-TYPE" 
     TCGA-US-A77J 
"RUNX2 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"RUNX2 WILD-TYPE" "RUNX2 WILD-TYPE" "RUNX2 WILD-TYPE" "RUNX2 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"RUNX2 WILD-TYPE" "RUNX2 WILD-TYPE" "RUNX2 WILD-TYPE" "RUNX2 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"RUNX2 WILD-TYPE" "RUNX2 WILD-TYPE" "RUNX2 WILD-TYPE" "RUNX2 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"RUNX2 WILD-TYPE" "RUNX2 WILD-TYPE" "RUNX2 WILD-TYPE"   "RUNX2 MUTATED" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"RUNX2 WILD-TYPE" "RUNX2 WILD-TYPE" "RUNX2 WILD-TYPE" "RUNX2 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"RUNX2 WILD-TYPE" "RUNX2 WILD-TYPE"   "RUNX2 MUTATED"   "RUNX2 MUTATED" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"RUNX2 WILD-TYPE" "RUNX2 WILD-TYPE" "RUNX2 WILD-TYPE"   "RUNX2 MUTATED" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"RUNX2 WILD-TYPE" "RUNX2 WILD-TYPE" "RUNX2 WILD-TYPE" "RUNX2 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"RUNX2 WILD-TYPE"   "RUNX2 MUTATED" "RUNX2 WILD-TYPE" "RUNX2 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
  "RUNX2 MUTATED" "RUNX2 WILD-TYPE" "RUNX2 WILD-TYPE" "RUNX2 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"RUNX2 WILD-TYPE" "RUNX2 WILD-TYPE" "RUNX2 WILD-TYPE"   "RUNX2 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"RUNX2 WILD-TYPE" "RUNX2 WILD-TYPE" "RUNX2 WILD-TYPE" "RUNX2 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
  "RUNX2 MUTATED"   "RUNX2 MUTATED" "RUNX2 WILD-TYPE" "RUNX2 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"RUNX2 WILD-TYPE" "RUNX2 WILD-TYPE"   "RUNX2 MUTATED" "RUNX2 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"RUNX2 WILD-TYPE" "RUNX2 WILD-TYPE" "RUNX2 WILD-TYPE" "RUNX2 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"RUNX2 WILD-TYPE" "RUNX2 WILD-TYPE" "RUNX2 WILD-TYPE" "RUNX2 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"RUNX2 WILD-TYPE" "RUNX2 WILD-TYPE" "RUNX2 WILD-TYPE" "RUNX2 WILD-TYPE" 
     TCGA-US-A77J 
"RUNX2 WILD-TYPE" 
[1] "hr=" "1.9"
D198V2, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  RUNX2 MUTATED          1        0         3         5         1        0
  RUNX2 WILD-TYPE        0        4         8        46         1        3
D198V3, multiclass
                 vv
clus              T1+T2 T3+T4
  RUNX2 MUTATED       1     9
  RUNX2 WILD-TYPE     5    57
D198V4, multiclass
       clus
vv      RUNX2 MUTATED RUNX2 WILD-TYPE
  T1+T2             1               5
  T3+T4             9              57
D198V5, binary
                 cls
clus               0  1
  RUNX2 MUTATED    4  6
  RUNX2 WILD-TYPE 13 48
[1] "tbl2"
                 cls
clus              [,1] [,2]
  RUNX2 MUTATED      4    6
  RUNX2 WILD-TYPE   13   48
   clus
vv  RUNX2 MUTATED RUNX2 WILD-TYPE
  0             4              13
  1             6              48
                 vv
clus              M0 M1 MX
  RUNX2 MUTATED    5  0  5
  RUNX2 WILD-TYPE 34  3 25
D198V6, multiclass
    clus
vv   RUNX2 MUTATED RUNX2 WILD-TYPE
  M0             5              34
  M1             0               3
  MX             5              25
D198V7, binary
                 cls
clus               0  1
  RUNX2 MUTATED    7  3
  RUNX2 WILD-TYPE 29 33
[1] "tbl2"
                 cls
clus              [,1] [,2]
  RUNX2 MUTATED      7    3
  RUNX2 WILD-TYPE   29   33
        clus
vv       RUNX2 MUTATED RUNX2 WILD-TYPE
  FEMALE             7              29
  MALE               3              33
                 vv
clus              PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  RUNX2 MUTATED                                     9
  RUNX2 WILD-TYPE                                  56
                 vv
clus              PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  RUNX2 MUTATED                                       0
  RUNX2 WILD-TYPE                                     4
                 vv
clus              PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  RUNX2 MUTATED                                                  1
  RUNX2 WILD-TYPE                                                1
D198V8, multiclass
                                                  clus
vv                                                 RUNX2 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                          9
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                        0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA             1
                                                  clus
vv                                                 RUNX2 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                           56
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                          4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA               1
D198V9, continuous
D198V10, continuous
                 vv
clus              R0 R1 RX
  RUNX2 MUTATED    8  2  0
  RUNX2 WILD-TYPE 34 22  2
D198V11, multiclass
    clus
vv   RUNX2 MUTATED RUNX2 WILD-TYPE
  R0             8              34
  R1             2              22
  RX             0               2
D198V12, continuous

Clustering(199) Variable = BCL7C MUTATION ANALYSIS
D199V1, survival
                 sevent
clus2              0  1
  BCL7C MUTATED    4  0
  BCL7C WILD-TYPE 36 29
  BCL7C MUTATED BCL7C WILD-TYPE 
              4              65 
  BCL7C MUTATED BCL7C WILD-TYPE 
              0              29 
$`BCL7C MUTATED`
TCGA-F2-6880 TCGA-F2-A44H TCGA-FB-A545 TCGA-HZ-8638 
        9.70        19.27        12.66         2.99 

$`BCL7C WILD-TYPE`
TCGA-F2-6879 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-FB-A4P5 TCGA-FB-A4P6 
       10.98        11.84         7.10         5.03         0.13        11.93 
TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR TCGA-FZ-5920 TCGA-FZ-5922 TCGA-FZ-5923 
        2.47         0.03         5.46         2.01        36.20        20.81 
TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-7919 
       12.89         7.66        13.02         7.89         0.92         0.66 
TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8001 
        0.13         0.26        12.13        11.87         0.26         0.62 
TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8636 
        0.79         0.69         3.95         0.92         0.53         0.16 
TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7645 
        0.76         0.95         6.38         1.51        11.41        49.38 
TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7651 TCGA-IB-7652 TCGA-IB-7885 
        4.77        21.90        15.35        19.82        15.65        27.98 
TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 
        4.04         3.62        43.79        15.81        19.66        16.04 
TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP 
        3.85        15.98         0.56        17.16        10.82         9.86 
TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W 
        7.20        15.12         0.26         1.35         4.18         3.62 
TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
        8.12        13.68        16.80        14.14        18.67 

  BCL7C MUTATED BCL7C WILD-TYPE 
           2.99            0.03 
  BCL7C MUTATED BCL7C WILD-TYPE 
          19.27           49.38 
  BCL7C MUTATED BCL7C WILD-TYPE 
          11.18            7.20 
[1] "3.0 - 19.3 (11.2)" "0.0 - 49.4 (7.2)" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"BCL7C WILD-TYPE"   "BCL7C MUTATED" "BCL7C WILD-TYPE" "BCL7C WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"BCL7C WILD-TYPE"   "BCL7C MUTATED" "BCL7C WILD-TYPE" "BCL7C WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
  "BCL7C MUTATED" "BCL7C WILD-TYPE" "BCL7C WILD-TYPE" "BCL7C WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"BCL7C WILD-TYPE" "BCL7C WILD-TYPE" "BCL7C WILD-TYPE" "BCL7C WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"BCL7C WILD-TYPE" "BCL7C WILD-TYPE" "BCL7C WILD-TYPE" "BCL7C WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"BCL7C WILD-TYPE" "BCL7C WILD-TYPE" "BCL7C WILD-TYPE" "BCL7C WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"BCL7C WILD-TYPE" "BCL7C WILD-TYPE" "BCL7C WILD-TYPE" "BCL7C WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"BCL7C WILD-TYPE" "BCL7C WILD-TYPE" "BCL7C WILD-TYPE" "BCL7C WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"BCL7C WILD-TYPE"   "BCL7C MUTATED" "BCL7C WILD-TYPE" "BCL7C WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"BCL7C WILD-TYPE" "BCL7C WILD-TYPE" "BCL7C WILD-TYPE" "BCL7C WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"BCL7C WILD-TYPE" "BCL7C WILD-TYPE" "BCL7C WILD-TYPE" "BCL7C WILD-TYPE" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"BCL7C WILD-TYPE" "BCL7C WILD-TYPE" "BCL7C WILD-TYPE" "BCL7C WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"BCL7C WILD-TYPE" "BCL7C WILD-TYPE" "BCL7C WILD-TYPE" "BCL7C WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"BCL7C WILD-TYPE" "BCL7C WILD-TYPE" "BCL7C WILD-TYPE" "BCL7C WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"BCL7C WILD-TYPE" "BCL7C WILD-TYPE" "BCL7C WILD-TYPE" "BCL7C WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"BCL7C WILD-TYPE" "BCL7C WILD-TYPE" "BCL7C WILD-TYPE" "BCL7C WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"BCL7C WILD-TYPE" "BCL7C WILD-TYPE" "BCL7C WILD-TYPE" "BCL7C WILD-TYPE" 
     TCGA-US-A77J 
"BCL7C WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"BCL7C WILD-TYPE"   "BCL7C MUTATED" "BCL7C WILD-TYPE" "BCL7C WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"BCL7C WILD-TYPE"   "BCL7C MUTATED" "BCL7C WILD-TYPE" "BCL7C WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
  "BCL7C MUTATED" "BCL7C WILD-TYPE" "BCL7C WILD-TYPE" "BCL7C WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"BCL7C WILD-TYPE" "BCL7C WILD-TYPE" "BCL7C WILD-TYPE" "BCL7C WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"BCL7C WILD-TYPE" "BCL7C WILD-TYPE" "BCL7C WILD-TYPE" "BCL7C WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"BCL7C WILD-TYPE" "BCL7C WILD-TYPE" "BCL7C WILD-TYPE" "BCL7C WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"BCL7C WILD-TYPE" "BCL7C WILD-TYPE" "BCL7C WILD-TYPE" "BCL7C WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"BCL7C WILD-TYPE" "BCL7C WILD-TYPE" "BCL7C WILD-TYPE" "BCL7C WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"BCL7C WILD-TYPE"   "BCL7C MUTATED" "BCL7C WILD-TYPE" "BCL7C WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"BCL7C WILD-TYPE" "BCL7C WILD-TYPE" "BCL7C WILD-TYPE" "BCL7C WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"BCL7C WILD-TYPE" "BCL7C WILD-TYPE" "BCL7C WILD-TYPE" "BCL7C WILD-TYPE" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"BCL7C WILD-TYPE" "BCL7C WILD-TYPE" "BCL7C WILD-TYPE" "BCL7C WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"BCL7C WILD-TYPE" "BCL7C WILD-TYPE" "BCL7C WILD-TYPE" "BCL7C WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"BCL7C WILD-TYPE" "BCL7C WILD-TYPE" "BCL7C WILD-TYPE" "BCL7C WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"BCL7C WILD-TYPE" "BCL7C WILD-TYPE" "BCL7C WILD-TYPE" "BCL7C WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"BCL7C WILD-TYPE" "BCL7C WILD-TYPE" "BCL7C WILD-TYPE" "BCL7C WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"BCL7C WILD-TYPE" "BCL7C WILD-TYPE" "BCL7C WILD-TYPE" "BCL7C WILD-TYPE" 
     TCGA-US-A77J 
"BCL7C WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"BCL7C WILD-TYPE"   "BCL7C MUTATED" "BCL7C WILD-TYPE" "BCL7C WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"BCL7C WILD-TYPE"   "BCL7C MUTATED" "BCL7C WILD-TYPE" "BCL7C WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
  "BCL7C MUTATED" "BCL7C WILD-TYPE" "BCL7C WILD-TYPE" "BCL7C WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"BCL7C WILD-TYPE" "BCL7C WILD-TYPE" "BCL7C WILD-TYPE" "BCL7C WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"BCL7C WILD-TYPE" "BCL7C WILD-TYPE" "BCL7C WILD-TYPE" "BCL7C WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"BCL7C WILD-TYPE" "BCL7C WILD-TYPE" "BCL7C WILD-TYPE" "BCL7C WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"BCL7C WILD-TYPE" "BCL7C WILD-TYPE" "BCL7C WILD-TYPE" "BCL7C WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"BCL7C WILD-TYPE" "BCL7C WILD-TYPE" "BCL7C WILD-TYPE" "BCL7C WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"BCL7C WILD-TYPE"   "BCL7C MUTATED" "BCL7C WILD-TYPE" "BCL7C WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"BCL7C WILD-TYPE" "BCL7C WILD-TYPE" "BCL7C WILD-TYPE" "BCL7C WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"BCL7C WILD-TYPE" "BCL7C WILD-TYPE" "BCL7C WILD-TYPE" "BCL7C WILD-TYPE" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"BCL7C WILD-TYPE" "BCL7C WILD-TYPE" "BCL7C WILD-TYPE" "BCL7C WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"BCL7C WILD-TYPE" "BCL7C WILD-TYPE" "BCL7C WILD-TYPE" "BCL7C WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"BCL7C WILD-TYPE" "BCL7C WILD-TYPE" "BCL7C WILD-TYPE" "BCL7C WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"BCL7C WILD-TYPE" "BCL7C WILD-TYPE" "BCL7C WILD-TYPE" "BCL7C WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"BCL7C WILD-TYPE" "BCL7C WILD-TYPE" "BCL7C WILD-TYPE" "BCL7C WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"BCL7C WILD-TYPE" "BCL7C WILD-TYPE" "BCL7C WILD-TYPE" "BCL7C WILD-TYPE" 
     TCGA-US-A77J 
"BCL7C WILD-TYPE" 
[1] "hr="     "7.4e+07"
D199V2, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  BCL7C MUTATED          1        0         1         2         0        0
  BCL7C WILD-TYPE        0        4        10        49         2        3
D199V3, multiclass
                 vv
clus              T1+T2 T3+T4
  BCL7C MUTATED       1     3
  BCL7C WILD-TYPE     5    63
D199V4, multiclass
       clus
vv      BCL7C MUTATED BCL7C WILD-TYPE
  T1+T2             1               5
  T3+T4             3              63
D199V5, binary
                 cls
clus               0  1
  BCL7C MUTATED    2  2
  BCL7C WILD-TYPE 15 52
[1] "tbl2"
                 cls
clus              [,1] [,2]
  BCL7C MUTATED      2    2
  BCL7C WILD-TYPE   15   52
   clus
vv  BCL7C MUTATED BCL7C WILD-TYPE
  0             2              15
  1             2              52
                 vv
clus              M0 M1 MX
  BCL7C MUTATED    3  0  1
  BCL7C WILD-TYPE 36  3 29
D199V6, multiclass
    clus
vv   BCL7C MUTATED BCL7C WILD-TYPE
  M0             3              36
  M1             0               3
  MX             1              29
D199V7, binary
                 cls
clus               0  1
  BCL7C MUTATED    2  2
  BCL7C WILD-TYPE 34 34
[1] "tbl2"
                 cls
clus              [,1] [,2]
  BCL7C MUTATED      2    2
  BCL7C WILD-TYPE   34   34
        clus
vv       BCL7C MUTATED BCL7C WILD-TYPE
  FEMALE             2              34
  MALE               2              34
                 vv
clus              PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  BCL7C MUTATED                                     3
  BCL7C WILD-TYPE                                  62
                 vv
clus              PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  BCL7C MUTATED                                       0
  BCL7C WILD-TYPE                                     4
                 vv
clus              PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  BCL7C MUTATED                                                  1
  BCL7C WILD-TYPE                                                1
D199V8, multiclass
                                                  clus
vv                                                 BCL7C MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                          3
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                        0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA             1
                                                  clus
vv                                                 BCL7C WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                           62
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                          4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA               1
D199V9, continuous
[1] "Remove cluster labels:" "BCL7C MUTATED"         
clus
  BCL7C MUTATED BCL7C WILD-TYPE 
              1              21 
     TCGA-FB-A4P5      TCGA-FB-A4P6      TCGA-FB-A5VM      TCGA-FB-A78T 
"BCL7C WILD-TYPE" "BCL7C WILD-TYPE" "BCL7C WILD-TYPE" "BCL7C WILD-TYPE" 
     TCGA-FB-A7DR      TCGA-H6-8124      TCGA-H6-A45N      TCGA-H8-A6C1 
"BCL7C WILD-TYPE" "BCL7C WILD-TYPE" "BCL7C WILD-TYPE" "BCL7C WILD-TYPE" 
     TCGA-IB-7644      TCGA-IB-7649      TCGA-IB-7651      TCGA-IB-7885 
"BCL7C WILD-TYPE" "BCL7C WILD-TYPE" "BCL7C WILD-TYPE" "BCL7C WILD-TYPE" 
     TCGA-IB-7886      TCGA-IB-7887      TCGA-IB-7891      TCGA-IB-8126 
"BCL7C WILD-TYPE" "BCL7C WILD-TYPE" "BCL7C WILD-TYPE" "BCL7C WILD-TYPE" 
     TCGA-IB-8127      TCGA-IB-A5SS      TCGA-IB-A6UG      TCGA-LB-A7SX 
"BCL7C WILD-TYPE" "BCL7C WILD-TYPE" "BCL7C WILD-TYPE" "BCL7C WILD-TYPE" 
     TCGA-OE-A75W 
"BCL7C WILD-TYPE" 
D199V10, continuous
                 vv
clus              R0 R1 RX
  BCL7C MUTATED    3  0  0
  BCL7C WILD-TYPE 39 24  2
D199V11, multiclass
    clus
vv   BCL7C MUTATED BCL7C WILD-TYPE
  R0             3              39
  R1             0              24
  RX             0               2
D199V12, continuous

Clustering(200) Variable = RGS22 MUTATION ANALYSIS
D200V1, survival
                 sevent
clus2              0  1
  RGS22 MUTATED    5  5
  RGS22 WILD-TYPE 35 24
  RGS22 MUTATED RGS22 WILD-TYPE 
             10              59 
  RGS22 MUTATED RGS22 WILD-TYPE 
              5              24 
$`RGS22 MUTATED`
TCGA-F2-7273 TCGA-F2-A44H TCGA-HZ-7289 TCGA-HZ-8003 TCGA-HZ-A4BH TCGA-IB-7649 
       11.84        19.27         7.89         0.69         6.38        15.35 
TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7893 TCGA-IB-8127 
       43.79        15.81         3.85        17.16 

$`RGS22 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7276 TCGA-F2-A44G TCGA-FB-A4P5 TCGA-FB-A4P6 
       10.98         9.70         7.10         5.03         0.13        11.93 
TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR TCGA-FZ-5920 TCGA-FZ-5922 
       12.66         2.47         0.03         5.46         2.01        36.20 
TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7918 TCGA-HZ-7919 
       20.81        12.89         7.66        13.02         0.92         0.66 
TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8001 
        0.13         0.26        12.13        11.87         0.26         0.62 
TCGA-HZ-8002 TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8636 TCGA-HZ-8638 
        0.79         3.95         0.92         0.53         0.16         2.99 
TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7646 
        0.76         0.95         1.51        11.41        49.38         4.77 
TCGA-IB-7647 TCGA-IB-7651 TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 
       21.90        19.82        15.65        27.98         4.04         3.62 
TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-A5SO TCGA-IB-A5SP 
       19.66        16.04        15.98         0.56        10.82         9.86 
TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W 
        7.20        15.12         0.26         1.35         4.18         3.62 
TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
        8.12        13.68        16.80        14.14        18.67 

  RGS22 MUTATED RGS22 WILD-TYPE 
           0.69            0.03 
  RGS22 MUTATED RGS22 WILD-TYPE 
          43.79           49.38 
  RGS22 MUTATED RGS22 WILD-TYPE 
         13.595           7.100 
[1] "0.7 - 43.8 (13.6)" "0.0 - 49.4 (7.1)" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"RGS22 WILD-TYPE" "RGS22 WILD-TYPE"   "RGS22 MUTATED" "RGS22 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"RGS22 WILD-TYPE"   "RGS22 MUTATED" "RGS22 WILD-TYPE" "RGS22 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"RGS22 WILD-TYPE" "RGS22 WILD-TYPE" "RGS22 WILD-TYPE" "RGS22 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"RGS22 WILD-TYPE" "RGS22 WILD-TYPE" "RGS22 WILD-TYPE" "RGS22 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"RGS22 WILD-TYPE" "RGS22 WILD-TYPE"   "RGS22 MUTATED" "RGS22 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"RGS22 WILD-TYPE" "RGS22 WILD-TYPE" "RGS22 WILD-TYPE" "RGS22 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"RGS22 WILD-TYPE" "RGS22 WILD-TYPE" "RGS22 WILD-TYPE" "RGS22 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
  "RGS22 MUTATED" "RGS22 WILD-TYPE" "RGS22 WILD-TYPE" "RGS22 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"RGS22 WILD-TYPE" "RGS22 WILD-TYPE" "RGS22 WILD-TYPE" "RGS22 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
  "RGS22 MUTATED" "RGS22 WILD-TYPE" "RGS22 WILD-TYPE" "RGS22 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"RGS22 WILD-TYPE" "RGS22 WILD-TYPE"   "RGS22 MUTATED" "RGS22 WILD-TYPE" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"RGS22 WILD-TYPE" "RGS22 WILD-TYPE" "RGS22 WILD-TYPE" "RGS22 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
  "RGS22 MUTATED"   "RGS22 MUTATED" "RGS22 WILD-TYPE" "RGS22 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
  "RGS22 MUTATED" "RGS22 WILD-TYPE" "RGS22 WILD-TYPE"   "RGS22 MUTATED" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"RGS22 WILD-TYPE" "RGS22 WILD-TYPE" "RGS22 WILD-TYPE" "RGS22 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"RGS22 WILD-TYPE" "RGS22 WILD-TYPE" "RGS22 WILD-TYPE" "RGS22 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"RGS22 WILD-TYPE" "RGS22 WILD-TYPE" "RGS22 WILD-TYPE" "RGS22 WILD-TYPE" 
     TCGA-US-A77J 
"RGS22 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"RGS22 WILD-TYPE" "RGS22 WILD-TYPE"   "RGS22 MUTATED" "RGS22 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"RGS22 WILD-TYPE"   "RGS22 MUTATED" "RGS22 WILD-TYPE" "RGS22 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"RGS22 WILD-TYPE" "RGS22 WILD-TYPE" "RGS22 WILD-TYPE" "RGS22 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"RGS22 WILD-TYPE" "RGS22 WILD-TYPE" "RGS22 WILD-TYPE" "RGS22 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"RGS22 WILD-TYPE" "RGS22 WILD-TYPE"   "RGS22 MUTATED" "RGS22 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"RGS22 WILD-TYPE" "RGS22 WILD-TYPE" "RGS22 WILD-TYPE" "RGS22 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"RGS22 WILD-TYPE" "RGS22 WILD-TYPE" "RGS22 WILD-TYPE" "RGS22 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
  "RGS22 MUTATED" "RGS22 WILD-TYPE" "RGS22 WILD-TYPE" "RGS22 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"RGS22 WILD-TYPE" "RGS22 WILD-TYPE" "RGS22 WILD-TYPE" "RGS22 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
  "RGS22 MUTATED" "RGS22 WILD-TYPE" "RGS22 WILD-TYPE" "RGS22 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"RGS22 WILD-TYPE" "RGS22 WILD-TYPE"   "RGS22 MUTATED" "RGS22 WILD-TYPE" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"RGS22 WILD-TYPE" "RGS22 WILD-TYPE" "RGS22 WILD-TYPE" "RGS22 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
  "RGS22 MUTATED"   "RGS22 MUTATED" "RGS22 WILD-TYPE" "RGS22 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
  "RGS22 MUTATED" "RGS22 WILD-TYPE" "RGS22 WILD-TYPE"   "RGS22 MUTATED" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"RGS22 WILD-TYPE" "RGS22 WILD-TYPE" "RGS22 WILD-TYPE" "RGS22 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"RGS22 WILD-TYPE" "RGS22 WILD-TYPE" "RGS22 WILD-TYPE" "RGS22 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"RGS22 WILD-TYPE" "RGS22 WILD-TYPE" "RGS22 WILD-TYPE" "RGS22 WILD-TYPE" 
     TCGA-US-A77J 
"RGS22 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"RGS22 WILD-TYPE" "RGS22 WILD-TYPE"   "RGS22 MUTATED" "RGS22 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"RGS22 WILD-TYPE"   "RGS22 MUTATED" "RGS22 WILD-TYPE" "RGS22 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"RGS22 WILD-TYPE" "RGS22 WILD-TYPE" "RGS22 WILD-TYPE" "RGS22 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"RGS22 WILD-TYPE" "RGS22 WILD-TYPE" "RGS22 WILD-TYPE" "RGS22 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"RGS22 WILD-TYPE" "RGS22 WILD-TYPE"   "RGS22 MUTATED" "RGS22 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"RGS22 WILD-TYPE" "RGS22 WILD-TYPE" "RGS22 WILD-TYPE" "RGS22 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"RGS22 WILD-TYPE" "RGS22 WILD-TYPE" "RGS22 WILD-TYPE" "RGS22 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
  "RGS22 MUTATED" "RGS22 WILD-TYPE" "RGS22 WILD-TYPE" "RGS22 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"RGS22 WILD-TYPE" "RGS22 WILD-TYPE" "RGS22 WILD-TYPE" "RGS22 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
  "RGS22 MUTATED" "RGS22 WILD-TYPE" "RGS22 WILD-TYPE" "RGS22 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"RGS22 WILD-TYPE" "RGS22 WILD-TYPE"   "RGS22 MUTATED" "RGS22 WILD-TYPE" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"RGS22 WILD-TYPE" "RGS22 WILD-TYPE" "RGS22 WILD-TYPE" "RGS22 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
  "RGS22 MUTATED"   "RGS22 MUTATED" "RGS22 WILD-TYPE" "RGS22 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
  "RGS22 MUTATED" "RGS22 WILD-TYPE" "RGS22 WILD-TYPE"   "RGS22 MUTATED" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"RGS22 WILD-TYPE" "RGS22 WILD-TYPE" "RGS22 WILD-TYPE" "RGS22 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"RGS22 WILD-TYPE" "RGS22 WILD-TYPE" "RGS22 WILD-TYPE" "RGS22 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"RGS22 WILD-TYPE" "RGS22 WILD-TYPE" "RGS22 WILD-TYPE" "RGS22 WILD-TYPE" 
     TCGA-US-A77J 
"RGS22 WILD-TYPE" 
[1] "hr=" "1.3"
D200V2, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  RGS22 MUTATED          0        0         3         7         0        0
  RGS22 WILD-TYPE        1        4         8        44         2        3
D200V3, multiclass
                 vv
clus              T1+T2 T3+T4
  RGS22 MUTATED       0    10
  RGS22 WILD-TYPE     6    56
D200V4, multiclass
       clus
vv      RGS22 MUTATED RGS22 WILD-TYPE
  T1+T2             0               6
  T3+T4            10              56
D200V5, binary
                 cls
clus               0  1
  RGS22 MUTATED    3  7
  RGS22 WILD-TYPE 14 47
[1] "tbl2"
                 cls
clus              [,1] [,2]
  RGS22 MUTATED      3    7
  RGS22 WILD-TYPE   14   47
   clus
vv  RGS22 MUTATED RGS22 WILD-TYPE
  0             3              14
  1             7              47
                 vv
clus              M0 M1 MX
  RGS22 MUTATED    7  0  3
  RGS22 WILD-TYPE 32  3 27
D200V6, multiclass
    clus
vv   RGS22 MUTATED RGS22 WILD-TYPE
  M0             7              32
  M1             0               3
  MX             3              27
D200V7, binary
                 cls
clus               0  1
  RGS22 MUTATED    4  6
  RGS22 WILD-TYPE 32 30
[1] "tbl2"
                 cls
clus              [,1] [,2]
  RGS22 MUTATED      4    6
  RGS22 WILD-TYPE   32   30
        clus
vv       RGS22 MUTATED RGS22 WILD-TYPE
  FEMALE             4              32
  MALE               6              30
                 vv
clus              PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  RGS22 MUTATED                                     9
  RGS22 WILD-TYPE                                  56
                 vv
clus              PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  RGS22 MUTATED                                       1
  RGS22 WILD-TYPE                                     3
                 vv
clus              PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  RGS22 MUTATED                                                  0
  RGS22 WILD-TYPE                                                2
D200V8, multiclass
                                                  clus
vv                                                 RGS22 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                          9
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                        1
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA             0
                                                  clus
vv                                                 RGS22 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                           56
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                          3
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA               2
D200V9, continuous
[1] "Remove cluster labels:" "RGS22 MUTATED"         
clus
  RGS22 MUTATED RGS22 WILD-TYPE 
              2              20 
     TCGA-F2-6880      TCGA-FB-A4P5      TCGA-FB-A4P6      TCGA-FB-A5VM 
"RGS22 WILD-TYPE" "RGS22 WILD-TYPE" "RGS22 WILD-TYPE" "RGS22 WILD-TYPE" 
     TCGA-FB-A78T      TCGA-FB-A7DR      TCGA-H6-8124      TCGA-H6-A45N 
"RGS22 WILD-TYPE" "RGS22 WILD-TYPE" "RGS22 WILD-TYPE" "RGS22 WILD-TYPE" 
     TCGA-H8-A6C1      TCGA-IB-7644      TCGA-IB-7651      TCGA-IB-7885 
"RGS22 WILD-TYPE" "RGS22 WILD-TYPE" "RGS22 WILD-TYPE" "RGS22 WILD-TYPE" 
     TCGA-IB-7886      TCGA-IB-7887      TCGA-IB-7891      TCGA-IB-8126 
"RGS22 WILD-TYPE" "RGS22 WILD-TYPE" "RGS22 WILD-TYPE" "RGS22 WILD-TYPE" 
     TCGA-IB-A5SS      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"RGS22 WILD-TYPE" "RGS22 WILD-TYPE" "RGS22 WILD-TYPE" "RGS22 WILD-TYPE" 
D200V10, continuous
[1] "Remove cluster labels:" "RGS22 MUTATED"         
clus
  RGS22 MUTATED RGS22 WILD-TYPE 
              2              17 
     TCGA-FB-A4P5      TCGA-FB-A4P6      TCGA-FB-A5VM      TCGA-FB-A78T 
"RGS22 WILD-TYPE" "RGS22 WILD-TYPE" "RGS22 WILD-TYPE" "RGS22 WILD-TYPE" 
     TCGA-FB-A7DR      TCGA-H6-8124      TCGA-H8-A6C1      TCGA-IB-7644 
"RGS22 WILD-TYPE" "RGS22 WILD-TYPE" "RGS22 WILD-TYPE" "RGS22 WILD-TYPE" 
     TCGA-IB-7651      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7891 
"RGS22 WILD-TYPE" "RGS22 WILD-TYPE" "RGS22 WILD-TYPE" "RGS22 WILD-TYPE" 
     TCGA-IB-8126      TCGA-IB-A5SS      TCGA-IB-A6UG      TCGA-LB-A7SX 
"RGS22 WILD-TYPE" "RGS22 WILD-TYPE" "RGS22 WILD-TYPE" "RGS22 WILD-TYPE" 
     TCGA-OE-A75W 
"RGS22 WILD-TYPE" 
                 vv
clus              R0 R1 RX
  RGS22 MUTATED    5  4  1
  RGS22 WILD-TYPE 37 20  1
D200V11, multiclass
    clus
vv   RGS22 MUTATED RGS22 WILD-TYPE
  R0             5              37
  R1             4              20
  RX             1               1
D200V12, continuous

Clustering(201) Variable = ERCC3 MUTATION ANALYSIS
D201V1, survival
                 sevent
clus2              0  1
  ERCC3 MUTATED    3  5
  ERCC3 WILD-TYPE 37 24
  ERCC3 MUTATED ERCC3 WILD-TYPE 
              8              61 
  ERCC3 MUTATED ERCC3 WILD-TYPE 
              5              24 
$`ERCC3 MUTATED`
TCGA-F2-7273 TCGA-H6-A45N TCGA-HZ-8638 TCGA-IB-7651 TCGA-IB-7890 TCGA-IB-7893 
       11.84         7.66         2.99        19.82        19.66         3.85 
TCGA-IB-8126 TCGA-IB-8127 
        0.56        17.16 

$`ERCC3 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H TCGA-FB-A4P5 
       10.98         9.70         7.10         5.03        19.27         0.13 
TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR TCGA-FZ-5920 
       11.93        12.66         2.47         0.03         5.46         2.01 
TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 TCGA-H8-A6C1 TCGA-HZ-7289 TCGA-HZ-7918 
       36.20        20.81        12.89        13.02         7.89         0.92 
TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 
        0.66         0.13         0.26        12.13        11.87         0.26 
TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 
        0.62         0.79         0.69         3.95         0.92         0.53 
TCGA-HZ-8636 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 
        0.16         0.76         0.95         6.38         1.51        11.41 
TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7652 TCGA-IB-7885 
       49.38         4.77        21.90        15.35        15.65        27.98 
TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7891 TCGA-IB-7897 
        4.04         3.62        43.79        15.81        16.04        15.98 
TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG 
       10.82         9.86         7.20        15.12         0.26         1.35 
TCGA-LB-A7SX TCGA-OE-A75W TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E 
        4.18         3.62         8.12        13.68        16.80        14.14 
TCGA-US-A77J 
       18.67 

  ERCC3 MUTATED ERCC3 WILD-TYPE 
           0.56            0.03 
  ERCC3 MUTATED ERCC3 WILD-TYPE 
          19.82           49.38 
  ERCC3 MUTATED ERCC3 WILD-TYPE 
           9.75            7.20 
[1] "0.6 - 19.8 (9.8)" "0.0 - 49.4 (7.2)"
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"ERCC3 WILD-TYPE" "ERCC3 WILD-TYPE"   "ERCC3 MUTATED" "ERCC3 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"ERCC3 WILD-TYPE" "ERCC3 WILD-TYPE" "ERCC3 WILD-TYPE" "ERCC3 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"ERCC3 WILD-TYPE" "ERCC3 WILD-TYPE" "ERCC3 WILD-TYPE" "ERCC3 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"ERCC3 WILD-TYPE" "ERCC3 WILD-TYPE" "ERCC3 WILD-TYPE" "ERCC3 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
  "ERCC3 MUTATED" "ERCC3 WILD-TYPE" "ERCC3 WILD-TYPE" "ERCC3 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"ERCC3 WILD-TYPE" "ERCC3 WILD-TYPE" "ERCC3 WILD-TYPE" "ERCC3 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"ERCC3 WILD-TYPE" "ERCC3 WILD-TYPE" "ERCC3 WILD-TYPE" "ERCC3 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"ERCC3 WILD-TYPE" "ERCC3 WILD-TYPE" "ERCC3 WILD-TYPE" "ERCC3 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"ERCC3 WILD-TYPE"   "ERCC3 MUTATED" "ERCC3 WILD-TYPE" "ERCC3 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"ERCC3 WILD-TYPE" "ERCC3 WILD-TYPE" "ERCC3 WILD-TYPE" "ERCC3 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"ERCC3 WILD-TYPE" "ERCC3 WILD-TYPE" "ERCC3 WILD-TYPE"   "ERCC3 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"ERCC3 WILD-TYPE" "ERCC3 WILD-TYPE" "ERCC3 WILD-TYPE" "ERCC3 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"ERCC3 WILD-TYPE" "ERCC3 WILD-TYPE"   "ERCC3 MUTATED" "ERCC3 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
  "ERCC3 MUTATED" "ERCC3 WILD-TYPE"   "ERCC3 MUTATED"   "ERCC3 MUTATED" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"ERCC3 WILD-TYPE" "ERCC3 WILD-TYPE" "ERCC3 WILD-TYPE" "ERCC3 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"ERCC3 WILD-TYPE" "ERCC3 WILD-TYPE" "ERCC3 WILD-TYPE" "ERCC3 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"ERCC3 WILD-TYPE" "ERCC3 WILD-TYPE" "ERCC3 WILD-TYPE" "ERCC3 WILD-TYPE" 
     TCGA-US-A77J 
"ERCC3 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"ERCC3 WILD-TYPE" "ERCC3 WILD-TYPE"   "ERCC3 MUTATED" "ERCC3 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"ERCC3 WILD-TYPE" "ERCC3 WILD-TYPE" "ERCC3 WILD-TYPE" "ERCC3 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"ERCC3 WILD-TYPE" "ERCC3 WILD-TYPE" "ERCC3 WILD-TYPE" "ERCC3 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"ERCC3 WILD-TYPE" "ERCC3 WILD-TYPE" "ERCC3 WILD-TYPE" "ERCC3 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
  "ERCC3 MUTATED" "ERCC3 WILD-TYPE" "ERCC3 WILD-TYPE" "ERCC3 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"ERCC3 WILD-TYPE" "ERCC3 WILD-TYPE" "ERCC3 WILD-TYPE" "ERCC3 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"ERCC3 WILD-TYPE" "ERCC3 WILD-TYPE" "ERCC3 WILD-TYPE" "ERCC3 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"ERCC3 WILD-TYPE" "ERCC3 WILD-TYPE" "ERCC3 WILD-TYPE" "ERCC3 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"ERCC3 WILD-TYPE"   "ERCC3 MUTATED" "ERCC3 WILD-TYPE" "ERCC3 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"ERCC3 WILD-TYPE" "ERCC3 WILD-TYPE" "ERCC3 WILD-TYPE" "ERCC3 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"ERCC3 WILD-TYPE" "ERCC3 WILD-TYPE" "ERCC3 WILD-TYPE"   "ERCC3 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"ERCC3 WILD-TYPE" "ERCC3 WILD-TYPE" "ERCC3 WILD-TYPE" "ERCC3 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"ERCC3 WILD-TYPE" "ERCC3 WILD-TYPE"   "ERCC3 MUTATED" "ERCC3 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
  "ERCC3 MUTATED" "ERCC3 WILD-TYPE"   "ERCC3 MUTATED"   "ERCC3 MUTATED" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"ERCC3 WILD-TYPE" "ERCC3 WILD-TYPE" "ERCC3 WILD-TYPE" "ERCC3 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"ERCC3 WILD-TYPE" "ERCC3 WILD-TYPE" "ERCC3 WILD-TYPE" "ERCC3 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"ERCC3 WILD-TYPE" "ERCC3 WILD-TYPE" "ERCC3 WILD-TYPE" "ERCC3 WILD-TYPE" 
     TCGA-US-A77J 
"ERCC3 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"ERCC3 WILD-TYPE" "ERCC3 WILD-TYPE"   "ERCC3 MUTATED" "ERCC3 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"ERCC3 WILD-TYPE" "ERCC3 WILD-TYPE" "ERCC3 WILD-TYPE" "ERCC3 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"ERCC3 WILD-TYPE" "ERCC3 WILD-TYPE" "ERCC3 WILD-TYPE" "ERCC3 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"ERCC3 WILD-TYPE" "ERCC3 WILD-TYPE" "ERCC3 WILD-TYPE" "ERCC3 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
  "ERCC3 MUTATED" "ERCC3 WILD-TYPE" "ERCC3 WILD-TYPE" "ERCC3 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"ERCC3 WILD-TYPE" "ERCC3 WILD-TYPE" "ERCC3 WILD-TYPE" "ERCC3 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"ERCC3 WILD-TYPE" "ERCC3 WILD-TYPE" "ERCC3 WILD-TYPE" "ERCC3 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"ERCC3 WILD-TYPE" "ERCC3 WILD-TYPE" "ERCC3 WILD-TYPE" "ERCC3 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"ERCC3 WILD-TYPE"   "ERCC3 MUTATED" "ERCC3 WILD-TYPE" "ERCC3 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"ERCC3 WILD-TYPE" "ERCC3 WILD-TYPE" "ERCC3 WILD-TYPE" "ERCC3 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"ERCC3 WILD-TYPE" "ERCC3 WILD-TYPE" "ERCC3 WILD-TYPE"   "ERCC3 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"ERCC3 WILD-TYPE" "ERCC3 WILD-TYPE" "ERCC3 WILD-TYPE" "ERCC3 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"ERCC3 WILD-TYPE" "ERCC3 WILD-TYPE"   "ERCC3 MUTATED" "ERCC3 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
  "ERCC3 MUTATED" "ERCC3 WILD-TYPE"   "ERCC3 MUTATED"   "ERCC3 MUTATED" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"ERCC3 WILD-TYPE" "ERCC3 WILD-TYPE" "ERCC3 WILD-TYPE" "ERCC3 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"ERCC3 WILD-TYPE" "ERCC3 WILD-TYPE" "ERCC3 WILD-TYPE" "ERCC3 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"ERCC3 WILD-TYPE" "ERCC3 WILD-TYPE" "ERCC3 WILD-TYPE" "ERCC3 WILD-TYPE" 
     TCGA-US-A77J 
"ERCC3 WILD-TYPE" 
[1] "hr=" "1.4"
D201V2, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  ERCC3 MUTATED          1        1         1         4         1        0
  ERCC3 WILD-TYPE        0        3        10        47         1        3
D201V3, multiclass
                 vv
clus              T1+T2 T3+T4
  ERCC3 MUTATED       2     6
  ERCC3 WILD-TYPE     4    60
D201V4, multiclass
       clus
vv      ERCC3 MUTATED ERCC3 WILD-TYPE
  T1+T2             2               4
  T3+T4             6              60
D201V5, binary
                 cls
clus               0  1
  ERCC3 MUTATED    3  5
  ERCC3 WILD-TYPE 14 49
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ERCC3 MUTATED      3    5
  ERCC3 WILD-TYPE   14   49
   clus
vv  ERCC3 MUTATED ERCC3 WILD-TYPE
  0             3              14
  1             5              49
                 vv
clus              M0 M1 MX
  ERCC3 MUTATED    6  0  2
  ERCC3 WILD-TYPE 33  3 28
D201V6, multiclass
    clus
vv   ERCC3 MUTATED ERCC3 WILD-TYPE
  M0             6              33
  M1             0               3
  MX             2              28
D201V7, binary
                 cls
clus               0  1
  ERCC3 MUTATED    4  4
  ERCC3 WILD-TYPE 32 32
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ERCC3 MUTATED      4    4
  ERCC3 WILD-TYPE   32   32
        clus
vv       ERCC3 MUTATED ERCC3 WILD-TYPE
  FEMALE             4              32
  MALE               4              32
                 vv
clus              PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  ERCC3 MUTATED                                     6
  ERCC3 WILD-TYPE                                  59
                 vv
clus              PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  ERCC3 MUTATED                                       1
  ERCC3 WILD-TYPE                                     3
                 vv
clus              PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  ERCC3 MUTATED                                                  1
  ERCC3 WILD-TYPE                                                1
D201V8, multiclass
                                                  clus
vv                                                 ERCC3 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                          6
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                        1
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA             1
                                                  clus
vv                                                 ERCC3 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                           59
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                          3
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA               1
D201V9, continuous
D201V10, continuous
                 vv
clus              R0 R1 RX
  ERCC3 MUTATED    4  3  0
  ERCC3 WILD-TYPE 38 21  2
D201V11, multiclass
    clus
vv   ERCC3 MUTATED ERCC3 WILD-TYPE
  R0             4              38
  R1             3              21
  RX             0               2
D201V12, continuous

Clustering(202) Variable = SYNCRIP MUTATION ANALYSIS
D202V1, survival
                   sevent
clus2                0  1
  SYNCRIP MUTATED    3  3
  SYNCRIP WILD-TYPE 37 26
  SYNCRIP MUTATED SYNCRIP WILD-TYPE 
                6                63 
  SYNCRIP MUTATED SYNCRIP WILD-TYPE 
                3                26 
$`SYNCRIP MUTATED`
TCGA-H6-A45N TCGA-HZ-7919 TCGA-HZ-7924 TCGA-IB-7651 TCGA-IB-7887 TCGA-IB-8126 
        7.66         0.66        12.13        19.82         3.62         0.56 

$`SYNCRIP WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P5 TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR 
        0.13        11.93        12.66         2.47         0.03         5.46 
TCGA-FZ-5920 TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 TCGA-H8-A6C1 TCGA-HZ-7289 
        2.01        36.20        20.81        12.89        13.02         7.89 
TCGA-HZ-7918 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8001 
        0.92         0.13         0.26        11.87         0.26         0.62 
TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8636 
        0.79         0.69         3.95         0.92         0.53         0.16 
TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 
        2.99         0.76         0.95         6.38         1.51        11.41 
TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7652 TCGA-IB-7885 
       49.38         4.77        21.90        15.35        15.65        27.98 
TCGA-IB-7886 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-7893 
        4.04        43.79        15.81        19.66        16.04         3.85 
TCGA-IB-7897 TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS 
       15.98        17.16        10.82         9.86         7.20        15.12 
TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W TCGA-PZ-A5RE TCGA-Q3-A5QY 
        0.26         1.35         4.18         3.62         8.12        13.68 
TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
       16.80        14.14        18.67 

  SYNCRIP MUTATED SYNCRIP WILD-TYPE 
             0.56              0.03 
  SYNCRIP MUTATED SYNCRIP WILD-TYPE 
            19.82             49.38 
  SYNCRIP MUTATED SYNCRIP WILD-TYPE 
             5.64              7.89 
[1] "0.6 - 19.8 (5.6)" "0.0 - 49.4 (7.9)"
       TCGA-F2-6879        TCGA-F2-6880        TCGA-F2-7273        TCGA-F2-7276 
"SYNCRIP WILD-TYPE" "SYNCRIP WILD-TYPE" "SYNCRIP WILD-TYPE" "SYNCRIP WILD-TYPE" 
       TCGA-F2-A44G        TCGA-F2-A44H        TCGA-FB-A4P5        TCGA-FB-A4P6 
"SYNCRIP WILD-TYPE" "SYNCRIP WILD-TYPE" "SYNCRIP WILD-TYPE" "SYNCRIP WILD-TYPE" 
       TCGA-FB-A545        TCGA-FB-A5VM        TCGA-FB-A78T        TCGA-FB-A7DR 
"SYNCRIP WILD-TYPE" "SYNCRIP WILD-TYPE" "SYNCRIP WILD-TYPE" "SYNCRIP WILD-TYPE" 
       TCGA-FZ-5920        TCGA-FZ-5922        TCGA-FZ-5923        TCGA-H6-8124 
"SYNCRIP WILD-TYPE" "SYNCRIP WILD-TYPE" "SYNCRIP WILD-TYPE" "SYNCRIP WILD-TYPE" 
       TCGA-H6-A45N        TCGA-H8-A6C1        TCGA-HZ-7289        TCGA-HZ-7918 
  "SYNCRIP MUTATED" "SYNCRIP WILD-TYPE" "SYNCRIP WILD-TYPE" "SYNCRIP WILD-TYPE" 
       TCGA-HZ-7919        TCGA-HZ-7922        TCGA-HZ-7923        TCGA-HZ-7924 
  "SYNCRIP MUTATED" "SYNCRIP WILD-TYPE" "SYNCRIP WILD-TYPE"   "SYNCRIP MUTATED" 
       TCGA-HZ-7925        TCGA-HZ-7926        TCGA-HZ-8001        TCGA-HZ-8002 
"SYNCRIP WILD-TYPE" "SYNCRIP WILD-TYPE" "SYNCRIP WILD-TYPE" "SYNCRIP WILD-TYPE" 
       TCGA-HZ-8003        TCGA-HZ-8005        TCGA-HZ-8315        TCGA-HZ-8317 
"SYNCRIP WILD-TYPE" "SYNCRIP WILD-TYPE" "SYNCRIP WILD-TYPE" "SYNCRIP WILD-TYPE" 
       TCGA-HZ-8636        TCGA-HZ-8638        TCGA-HZ-A49G        TCGA-HZ-A49H 
"SYNCRIP WILD-TYPE" "SYNCRIP WILD-TYPE" "SYNCRIP WILD-TYPE" "SYNCRIP WILD-TYPE" 
       TCGA-HZ-A4BH        TCGA-HZ-A4BK        TCGA-IB-7644        TCGA-IB-7645 
"SYNCRIP WILD-TYPE" "SYNCRIP WILD-TYPE" "SYNCRIP WILD-TYPE" "SYNCRIP WILD-TYPE" 
       TCGA-IB-7646        TCGA-IB-7647        TCGA-IB-7649        TCGA-IB-7651 
"SYNCRIP WILD-TYPE" "SYNCRIP WILD-TYPE" "SYNCRIP WILD-TYPE"   "SYNCRIP MUTATED" 
       TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-7886        TCGA-IB-7887 
"SYNCRIP WILD-TYPE" "SYNCRIP WILD-TYPE" "SYNCRIP WILD-TYPE"   "SYNCRIP MUTATED" 
       TCGA-IB-7888        TCGA-IB-7889        TCGA-IB-7890        TCGA-IB-7891 
"SYNCRIP WILD-TYPE" "SYNCRIP WILD-TYPE" "SYNCRIP WILD-TYPE" "SYNCRIP WILD-TYPE" 
       TCGA-IB-7893        TCGA-IB-7897        TCGA-IB-8126        TCGA-IB-8127 
"SYNCRIP WILD-TYPE" "SYNCRIP WILD-TYPE"   "SYNCRIP MUTATED" "SYNCRIP WILD-TYPE" 
       TCGA-IB-A5SO        TCGA-IB-A5SP        TCGA-IB-A5SQ        TCGA-IB-A5SS 
"SYNCRIP WILD-TYPE" "SYNCRIP WILD-TYPE" "SYNCRIP WILD-TYPE" "SYNCRIP WILD-TYPE" 
       TCGA-IB-A5ST        TCGA-IB-A6UG        TCGA-LB-A7SX        TCGA-OE-A75W 
"SYNCRIP WILD-TYPE" "SYNCRIP WILD-TYPE" "SYNCRIP WILD-TYPE" "SYNCRIP WILD-TYPE" 
       TCGA-PZ-A5RE        TCGA-Q3-A5QY        TCGA-US-A779        TCGA-US-A77E 
"SYNCRIP WILD-TYPE" "SYNCRIP WILD-TYPE" "SYNCRIP WILD-TYPE" "SYNCRIP WILD-TYPE" 
       TCGA-US-A77J 
"SYNCRIP WILD-TYPE" 
       TCGA-F2-6879        TCGA-F2-6880        TCGA-F2-7273        TCGA-F2-7276 
"SYNCRIP WILD-TYPE" "SYNCRIP WILD-TYPE" "SYNCRIP WILD-TYPE" "SYNCRIP WILD-TYPE" 
       TCGA-F2-A44G        TCGA-F2-A44H        TCGA-FB-A4P5        TCGA-FB-A4P6 
"SYNCRIP WILD-TYPE" "SYNCRIP WILD-TYPE" "SYNCRIP WILD-TYPE" "SYNCRIP WILD-TYPE" 
       TCGA-FB-A545        TCGA-FB-A5VM        TCGA-FB-A78T        TCGA-FB-A7DR 
"SYNCRIP WILD-TYPE" "SYNCRIP WILD-TYPE" "SYNCRIP WILD-TYPE" "SYNCRIP WILD-TYPE" 
       TCGA-FZ-5920        TCGA-FZ-5922        TCGA-FZ-5923        TCGA-H6-8124 
"SYNCRIP WILD-TYPE" "SYNCRIP WILD-TYPE" "SYNCRIP WILD-TYPE" "SYNCRIP WILD-TYPE" 
       TCGA-H6-A45N        TCGA-H8-A6C1        TCGA-HZ-7289        TCGA-HZ-7918 
  "SYNCRIP MUTATED" "SYNCRIP WILD-TYPE" "SYNCRIP WILD-TYPE" "SYNCRIP WILD-TYPE" 
       TCGA-HZ-7919        TCGA-HZ-7922        TCGA-HZ-7923        TCGA-HZ-7924 
  "SYNCRIP MUTATED" "SYNCRIP WILD-TYPE" "SYNCRIP WILD-TYPE"   "SYNCRIP MUTATED" 
       TCGA-HZ-7925        TCGA-HZ-7926        TCGA-HZ-8001        TCGA-HZ-8002 
"SYNCRIP WILD-TYPE" "SYNCRIP WILD-TYPE" "SYNCRIP WILD-TYPE" "SYNCRIP WILD-TYPE" 
       TCGA-HZ-8003        TCGA-HZ-8005        TCGA-HZ-8315        TCGA-HZ-8317 
"SYNCRIP WILD-TYPE" "SYNCRIP WILD-TYPE" "SYNCRIP WILD-TYPE" "SYNCRIP WILD-TYPE" 
       TCGA-HZ-8636        TCGA-HZ-8638        TCGA-HZ-A49G        TCGA-HZ-A49H 
"SYNCRIP WILD-TYPE" "SYNCRIP WILD-TYPE" "SYNCRIP WILD-TYPE" "SYNCRIP WILD-TYPE" 
       TCGA-HZ-A4BH        TCGA-HZ-A4BK        TCGA-IB-7644        TCGA-IB-7645 
"SYNCRIP WILD-TYPE" "SYNCRIP WILD-TYPE" "SYNCRIP WILD-TYPE" "SYNCRIP WILD-TYPE" 
       TCGA-IB-7646        TCGA-IB-7647        TCGA-IB-7649        TCGA-IB-7651 
"SYNCRIP WILD-TYPE" "SYNCRIP WILD-TYPE" "SYNCRIP WILD-TYPE"   "SYNCRIP MUTATED" 
       TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-7886        TCGA-IB-7887 
"SYNCRIP WILD-TYPE" "SYNCRIP WILD-TYPE" "SYNCRIP WILD-TYPE"   "SYNCRIP MUTATED" 
       TCGA-IB-7888        TCGA-IB-7889        TCGA-IB-7890        TCGA-IB-7891 
"SYNCRIP WILD-TYPE" "SYNCRIP WILD-TYPE" "SYNCRIP WILD-TYPE" "SYNCRIP WILD-TYPE" 
       TCGA-IB-7893        TCGA-IB-7897        TCGA-IB-8126        TCGA-IB-8127 
"SYNCRIP WILD-TYPE" "SYNCRIP WILD-TYPE"   "SYNCRIP MUTATED" "SYNCRIP WILD-TYPE" 
       TCGA-IB-A5SO        TCGA-IB-A5SP        TCGA-IB-A5SQ        TCGA-IB-A5SS 
"SYNCRIP WILD-TYPE" "SYNCRIP WILD-TYPE" "SYNCRIP WILD-TYPE" "SYNCRIP WILD-TYPE" 
       TCGA-IB-A5ST        TCGA-IB-A6UG        TCGA-LB-A7SX        TCGA-OE-A75W 
"SYNCRIP WILD-TYPE" "SYNCRIP WILD-TYPE" "SYNCRIP WILD-TYPE" "SYNCRIP WILD-TYPE" 
       TCGA-PZ-A5RE        TCGA-Q3-A5QY        TCGA-US-A779        TCGA-US-A77E 
"SYNCRIP WILD-TYPE" "SYNCRIP WILD-TYPE" "SYNCRIP WILD-TYPE" "SYNCRIP WILD-TYPE" 
       TCGA-US-A77J 
"SYNCRIP WILD-TYPE" 
       TCGA-F2-6879        TCGA-F2-6880        TCGA-F2-7273        TCGA-F2-7276 
"SYNCRIP WILD-TYPE" "SYNCRIP WILD-TYPE" "SYNCRIP WILD-TYPE" "SYNCRIP WILD-TYPE" 
       TCGA-F2-A44G        TCGA-F2-A44H        TCGA-FB-A4P5        TCGA-FB-A4P6 
"SYNCRIP WILD-TYPE" "SYNCRIP WILD-TYPE" "SYNCRIP WILD-TYPE" "SYNCRIP WILD-TYPE" 
       TCGA-FB-A545        TCGA-FB-A5VM        TCGA-FB-A78T        TCGA-FB-A7DR 
"SYNCRIP WILD-TYPE" "SYNCRIP WILD-TYPE" "SYNCRIP WILD-TYPE" "SYNCRIP WILD-TYPE" 
       TCGA-FZ-5920        TCGA-FZ-5922        TCGA-FZ-5923        TCGA-H6-8124 
"SYNCRIP WILD-TYPE" "SYNCRIP WILD-TYPE" "SYNCRIP WILD-TYPE" "SYNCRIP WILD-TYPE" 
       TCGA-H6-A45N        TCGA-H8-A6C1        TCGA-HZ-7289        TCGA-HZ-7918 
  "SYNCRIP MUTATED" "SYNCRIP WILD-TYPE" "SYNCRIP WILD-TYPE" "SYNCRIP WILD-TYPE" 
       TCGA-HZ-7919        TCGA-HZ-7922        TCGA-HZ-7923        TCGA-HZ-7924 
  "SYNCRIP MUTATED" "SYNCRIP WILD-TYPE" "SYNCRIP WILD-TYPE"   "SYNCRIP MUTATED" 
       TCGA-HZ-7925        TCGA-HZ-7926        TCGA-HZ-8001        TCGA-HZ-8002 
"SYNCRIP WILD-TYPE" "SYNCRIP WILD-TYPE" "SYNCRIP WILD-TYPE" "SYNCRIP WILD-TYPE" 
       TCGA-HZ-8003        TCGA-HZ-8005        TCGA-HZ-8315        TCGA-HZ-8317 
"SYNCRIP WILD-TYPE" "SYNCRIP WILD-TYPE" "SYNCRIP WILD-TYPE" "SYNCRIP WILD-TYPE" 
       TCGA-HZ-8636        TCGA-HZ-8638        TCGA-HZ-A49G        TCGA-HZ-A49H 
"SYNCRIP WILD-TYPE" "SYNCRIP WILD-TYPE" "SYNCRIP WILD-TYPE" "SYNCRIP WILD-TYPE" 
       TCGA-HZ-A4BH        TCGA-HZ-A4BK        TCGA-IB-7644        TCGA-IB-7645 
"SYNCRIP WILD-TYPE" "SYNCRIP WILD-TYPE" "SYNCRIP WILD-TYPE" "SYNCRIP WILD-TYPE" 
       TCGA-IB-7646        TCGA-IB-7647        TCGA-IB-7649        TCGA-IB-7651 
"SYNCRIP WILD-TYPE" "SYNCRIP WILD-TYPE" "SYNCRIP WILD-TYPE"   "SYNCRIP MUTATED" 
       TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-7886        TCGA-IB-7887 
"SYNCRIP WILD-TYPE" "SYNCRIP WILD-TYPE" "SYNCRIP WILD-TYPE"   "SYNCRIP MUTATED" 
       TCGA-IB-7888        TCGA-IB-7889        TCGA-IB-7890        TCGA-IB-7891 
"SYNCRIP WILD-TYPE" "SYNCRIP WILD-TYPE" "SYNCRIP WILD-TYPE" "SYNCRIP WILD-TYPE" 
       TCGA-IB-7893        TCGA-IB-7897        TCGA-IB-8126        TCGA-IB-8127 
"SYNCRIP WILD-TYPE" "SYNCRIP WILD-TYPE"   "SYNCRIP MUTATED" "SYNCRIP WILD-TYPE" 
       TCGA-IB-A5SO        TCGA-IB-A5SP        TCGA-IB-A5SQ        TCGA-IB-A5SS 
"SYNCRIP WILD-TYPE" "SYNCRIP WILD-TYPE" "SYNCRIP WILD-TYPE" "SYNCRIP WILD-TYPE" 
       TCGA-IB-A5ST        TCGA-IB-A6UG        TCGA-LB-A7SX        TCGA-OE-A75W 
"SYNCRIP WILD-TYPE" "SYNCRIP WILD-TYPE" "SYNCRIP WILD-TYPE" "SYNCRIP WILD-TYPE" 
       TCGA-PZ-A5RE        TCGA-Q3-A5QY        TCGA-US-A779        TCGA-US-A77E 
"SYNCRIP WILD-TYPE" "SYNCRIP WILD-TYPE" "SYNCRIP WILD-TYPE" "SYNCRIP WILD-TYPE" 
       TCGA-US-A77J 
"SYNCRIP WILD-TYPE" 
[1] "hr=" "1.7"
D202V2, continuous
                   vv
clus                STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  SYNCRIP MUTATED          0        0         1         4         1        0
  SYNCRIP WILD-TYPE        1        4        10        47         1        3
D202V3, multiclass
                   vv
clus                T1+T2 T3+T4
  SYNCRIP MUTATED       0     6
  SYNCRIP WILD-TYPE     6    60
D202V4, multiclass
       clus
vv      SYNCRIP MUTATED SYNCRIP WILD-TYPE
  T1+T2               0                 6
  T3+T4               6                60
D202V5, binary
                   cls
clus                 0  1
  SYNCRIP MUTATED    1  5
  SYNCRIP WILD-TYPE 16 49
[1] "tbl2"
                   cls
clus                [,1] [,2]
  SYNCRIP MUTATED      1    5
  SYNCRIP WILD-TYPE   16   49
   clus
vv  SYNCRIP MUTATED SYNCRIP WILD-TYPE
  0               1                16
  1               5                49
                   vv
clus                M0 M1 MX
  SYNCRIP MUTATED    4  0  2
  SYNCRIP WILD-TYPE 35  3 28
D202V6, multiclass
    clus
vv   SYNCRIP MUTATED SYNCRIP WILD-TYPE
  M0               4                35
  M1               0                 3
  MX               2                28
D202V7, binary
                   cls
clus                 0  1
  SYNCRIP MUTATED    6  0
  SYNCRIP WILD-TYPE 30 36
[1] "tbl2"
                   cls
clus                [,1] [,2]
  SYNCRIP MUTATED      6    0
  SYNCRIP WILD-TYPE   30   36
        clus
vv       SYNCRIP MUTATED SYNCRIP WILD-TYPE
  FEMALE               6                30
  MALE                 0                36
                   vv
clus                PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  SYNCRIP MUTATED                                     5
  SYNCRIP WILD-TYPE                                  60
                   vv
clus                PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  SYNCRIP MUTATED                                       1
  SYNCRIP WILD-TYPE                                     3
                   vv
clus                PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  SYNCRIP MUTATED                                                  0
  SYNCRIP WILD-TYPE                                                2
D202V8, multiclass
                                                  clus
vv                                                 SYNCRIP MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                            5
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                          1
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA               0
                                                  clus
vv                                                 SYNCRIP WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                             60
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                            3
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                 2
D202V9, continuous
D202V10, continuous
[1] "Remove cluster labels:" "SYNCRIP MUTATED"       
clus
  SYNCRIP MUTATED SYNCRIP WILD-TYPE 
                2                17 
       TCGA-FB-A4P5        TCGA-FB-A4P6        TCGA-FB-A5VM        TCGA-FB-A78T 
"SYNCRIP WILD-TYPE" "SYNCRIP WILD-TYPE" "SYNCRIP WILD-TYPE" "SYNCRIP WILD-TYPE" 
       TCGA-FB-A7DR        TCGA-H6-8124        TCGA-H8-A6C1        TCGA-IB-7644 
"SYNCRIP WILD-TYPE" "SYNCRIP WILD-TYPE" "SYNCRIP WILD-TYPE" "SYNCRIP WILD-TYPE" 
       TCGA-IB-7649        TCGA-IB-7885        TCGA-IB-7886        TCGA-IB-7891 
"SYNCRIP WILD-TYPE" "SYNCRIP WILD-TYPE" "SYNCRIP WILD-TYPE" "SYNCRIP WILD-TYPE" 
       TCGA-IB-8127        TCGA-IB-A5SS        TCGA-IB-A6UG        TCGA-LB-A7SX 
"SYNCRIP WILD-TYPE" "SYNCRIP WILD-TYPE" "SYNCRIP WILD-TYPE" "SYNCRIP WILD-TYPE" 
       TCGA-OE-A75W 
"SYNCRIP WILD-TYPE" 
                   vv
clus                R0 R1 RX
  SYNCRIP MUTATED    2  3  0
  SYNCRIP WILD-TYPE 40 21  2
D202V11, multiclass
    clus
vv   SYNCRIP MUTATED SYNCRIP WILD-TYPE
  R0               2                40
  R1               3                21
  RX               0                 2
D202V12, continuous

Clustering(203) Variable = AHDC1 MUTATION ANALYSIS
D203V1, survival
                 sevent
clus2              0  1
  AHDC1 MUTATED    3  5
  AHDC1 WILD-TYPE 37 24
  AHDC1 MUTATED AHDC1 WILD-TYPE 
              8              61 
  AHDC1 MUTATED AHDC1 WILD-TYPE 
              5              24 
$`AHDC1 MUTATED`
TCGA-F2-6879 TCGA-F2-A44H TCGA-H6-A45N TCGA-HZ-7919 TCGA-HZ-8002 TCGA-IB-7651 
       10.98        19.27         7.66         0.66         0.79        19.82 
TCGA-IB-7888 TCGA-IB-7897 
       43.79        15.98 

$`AHDC1 WILD-TYPE`
TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-FB-A4P5 TCGA-FB-A4P6 
        9.70        11.84         7.10         5.03         0.13        11.93 
TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR TCGA-FZ-5920 TCGA-FZ-5922 
       12.66         2.47         0.03         5.46         2.01        36.20 
TCGA-FZ-5923 TCGA-H6-8124 TCGA-H8-A6C1 TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-7922 
       20.81        12.89        13.02         7.89         0.92         0.13 
TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8003 
        0.26        12.13        11.87         0.26         0.62         0.69 
TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G 
        3.95         0.92         0.53         0.16         2.99         0.76 
TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7646 
        0.95         6.38         1.51        11.41        49.38         4.77 
TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 
       21.90        15.35        15.65        27.98         4.04         3.62 
TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-8126 TCGA-IB-8127 
       15.81        19.66        16.04         3.85         0.56        17.16 
TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG 
       10.82         9.86         7.20        15.12         0.26         1.35 
TCGA-LB-A7SX TCGA-OE-A75W TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E 
        4.18         3.62         8.12        13.68        16.80        14.14 
TCGA-US-A77J 
       18.67 

  AHDC1 MUTATED AHDC1 WILD-TYPE 
           0.66            0.03 
  AHDC1 MUTATED AHDC1 WILD-TYPE 
          43.79           49.38 
  AHDC1 MUTATED AHDC1 WILD-TYPE 
          13.48            7.10 
[1] "0.7 - 43.8 (13.5)" "0.0 - 49.4 (7.1)" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
  "AHDC1 MUTATED" "AHDC1 WILD-TYPE" "AHDC1 WILD-TYPE" "AHDC1 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"AHDC1 WILD-TYPE"   "AHDC1 MUTATED" "AHDC1 WILD-TYPE" "AHDC1 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"AHDC1 WILD-TYPE" "AHDC1 WILD-TYPE" "AHDC1 WILD-TYPE" "AHDC1 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"AHDC1 WILD-TYPE" "AHDC1 WILD-TYPE" "AHDC1 WILD-TYPE" "AHDC1 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
  "AHDC1 MUTATED" "AHDC1 WILD-TYPE" "AHDC1 WILD-TYPE" "AHDC1 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
  "AHDC1 MUTATED" "AHDC1 WILD-TYPE" "AHDC1 WILD-TYPE" "AHDC1 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"AHDC1 WILD-TYPE" "AHDC1 WILD-TYPE" "AHDC1 WILD-TYPE"   "AHDC1 MUTATED" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"AHDC1 WILD-TYPE" "AHDC1 WILD-TYPE" "AHDC1 WILD-TYPE" "AHDC1 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"AHDC1 WILD-TYPE" "AHDC1 WILD-TYPE" "AHDC1 WILD-TYPE" "AHDC1 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"AHDC1 WILD-TYPE" "AHDC1 WILD-TYPE" "AHDC1 WILD-TYPE" "AHDC1 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"AHDC1 WILD-TYPE" "AHDC1 WILD-TYPE" "AHDC1 WILD-TYPE"   "AHDC1 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"AHDC1 WILD-TYPE" "AHDC1 WILD-TYPE" "AHDC1 WILD-TYPE" "AHDC1 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
  "AHDC1 MUTATED" "AHDC1 WILD-TYPE" "AHDC1 WILD-TYPE" "AHDC1 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"AHDC1 WILD-TYPE"   "AHDC1 MUTATED" "AHDC1 WILD-TYPE" "AHDC1 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"AHDC1 WILD-TYPE" "AHDC1 WILD-TYPE" "AHDC1 WILD-TYPE" "AHDC1 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"AHDC1 WILD-TYPE" "AHDC1 WILD-TYPE" "AHDC1 WILD-TYPE" "AHDC1 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"AHDC1 WILD-TYPE" "AHDC1 WILD-TYPE" "AHDC1 WILD-TYPE" "AHDC1 WILD-TYPE" 
     TCGA-US-A77J 
"AHDC1 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
  "AHDC1 MUTATED" "AHDC1 WILD-TYPE" "AHDC1 WILD-TYPE" "AHDC1 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"AHDC1 WILD-TYPE"   "AHDC1 MUTATED" "AHDC1 WILD-TYPE" "AHDC1 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"AHDC1 WILD-TYPE" "AHDC1 WILD-TYPE" "AHDC1 WILD-TYPE" "AHDC1 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"AHDC1 WILD-TYPE" "AHDC1 WILD-TYPE" "AHDC1 WILD-TYPE" "AHDC1 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
  "AHDC1 MUTATED" "AHDC1 WILD-TYPE" "AHDC1 WILD-TYPE" "AHDC1 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
  "AHDC1 MUTATED" "AHDC1 WILD-TYPE" "AHDC1 WILD-TYPE" "AHDC1 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"AHDC1 WILD-TYPE" "AHDC1 WILD-TYPE" "AHDC1 WILD-TYPE"   "AHDC1 MUTATED" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"AHDC1 WILD-TYPE" "AHDC1 WILD-TYPE" "AHDC1 WILD-TYPE" "AHDC1 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"AHDC1 WILD-TYPE" "AHDC1 WILD-TYPE" "AHDC1 WILD-TYPE" "AHDC1 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"AHDC1 WILD-TYPE" "AHDC1 WILD-TYPE" "AHDC1 WILD-TYPE" "AHDC1 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"AHDC1 WILD-TYPE" "AHDC1 WILD-TYPE" "AHDC1 WILD-TYPE"   "AHDC1 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"AHDC1 WILD-TYPE" "AHDC1 WILD-TYPE" "AHDC1 WILD-TYPE" "AHDC1 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
  "AHDC1 MUTATED" "AHDC1 WILD-TYPE" "AHDC1 WILD-TYPE" "AHDC1 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"AHDC1 WILD-TYPE"   "AHDC1 MUTATED" "AHDC1 WILD-TYPE" "AHDC1 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"AHDC1 WILD-TYPE" "AHDC1 WILD-TYPE" "AHDC1 WILD-TYPE" "AHDC1 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"AHDC1 WILD-TYPE" "AHDC1 WILD-TYPE" "AHDC1 WILD-TYPE" "AHDC1 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"AHDC1 WILD-TYPE" "AHDC1 WILD-TYPE" "AHDC1 WILD-TYPE" "AHDC1 WILD-TYPE" 
     TCGA-US-A77J 
"AHDC1 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
  "AHDC1 MUTATED" "AHDC1 WILD-TYPE" "AHDC1 WILD-TYPE" "AHDC1 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"AHDC1 WILD-TYPE"   "AHDC1 MUTATED" "AHDC1 WILD-TYPE" "AHDC1 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"AHDC1 WILD-TYPE" "AHDC1 WILD-TYPE" "AHDC1 WILD-TYPE" "AHDC1 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"AHDC1 WILD-TYPE" "AHDC1 WILD-TYPE" "AHDC1 WILD-TYPE" "AHDC1 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
  "AHDC1 MUTATED" "AHDC1 WILD-TYPE" "AHDC1 WILD-TYPE" "AHDC1 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
  "AHDC1 MUTATED" "AHDC1 WILD-TYPE" "AHDC1 WILD-TYPE" "AHDC1 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"AHDC1 WILD-TYPE" "AHDC1 WILD-TYPE" "AHDC1 WILD-TYPE"   "AHDC1 MUTATED" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"AHDC1 WILD-TYPE" "AHDC1 WILD-TYPE" "AHDC1 WILD-TYPE" "AHDC1 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"AHDC1 WILD-TYPE" "AHDC1 WILD-TYPE" "AHDC1 WILD-TYPE" "AHDC1 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"AHDC1 WILD-TYPE" "AHDC1 WILD-TYPE" "AHDC1 WILD-TYPE" "AHDC1 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"AHDC1 WILD-TYPE" "AHDC1 WILD-TYPE" "AHDC1 WILD-TYPE"   "AHDC1 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"AHDC1 WILD-TYPE" "AHDC1 WILD-TYPE" "AHDC1 WILD-TYPE" "AHDC1 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
  "AHDC1 MUTATED" "AHDC1 WILD-TYPE" "AHDC1 WILD-TYPE" "AHDC1 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"AHDC1 WILD-TYPE"   "AHDC1 MUTATED" "AHDC1 WILD-TYPE" "AHDC1 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"AHDC1 WILD-TYPE" "AHDC1 WILD-TYPE" "AHDC1 WILD-TYPE" "AHDC1 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"AHDC1 WILD-TYPE" "AHDC1 WILD-TYPE" "AHDC1 WILD-TYPE" "AHDC1 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"AHDC1 WILD-TYPE" "AHDC1 WILD-TYPE" "AHDC1 WILD-TYPE" "AHDC1 WILD-TYPE" 
     TCGA-US-A77J 
"AHDC1 WILD-TYPE" 
[1] "hr=" "1.2"
D203V2, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  AHDC1 MUTATED          0        0         2         6         0        0
  AHDC1 WILD-TYPE        1        4         9        45         2        3
D203V3, multiclass
                 vv
clus              T1+T2 T3+T4
  AHDC1 MUTATED       0     8
  AHDC1 WILD-TYPE     6    58
D203V4, multiclass
       clus
vv      AHDC1 MUTATED AHDC1 WILD-TYPE
  T1+T2             0               6
  T3+T4             8              58
D203V5, binary
                 cls
clus               0  1
  AHDC1 MUTATED    2  6
  AHDC1 WILD-TYPE 15 48
[1] "tbl2"
                 cls
clus              [,1] [,2]
  AHDC1 MUTATED      2    6
  AHDC1 WILD-TYPE   15   48
   clus
vv  AHDC1 MUTATED AHDC1 WILD-TYPE
  0             2              15
  1             6              48
                 vv
clus              M0 M1 MX
  AHDC1 MUTATED    6  0  2
  AHDC1 WILD-TYPE 33  3 28
D203V6, multiclass
    clus
vv   AHDC1 MUTATED AHDC1 WILD-TYPE
  M0             6              33
  M1             0               3
  MX             2              28
D203V7, binary
                 cls
clus               0  1
  AHDC1 MUTATED    5  3
  AHDC1 WILD-TYPE 31 33
[1] "tbl2"
                 cls
clus              [,1] [,2]
  AHDC1 MUTATED      5    3
  AHDC1 WILD-TYPE   31   33
        clus
vv       AHDC1 MUTATED AHDC1 WILD-TYPE
  FEMALE             5              31
  MALE               3              33
                 vv
clus              PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  AHDC1 MUTATED                                     6
  AHDC1 WILD-TYPE                                  59
                 vv
clus              PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  AHDC1 MUTATED                                       1
  AHDC1 WILD-TYPE                                     3
                 vv
clus              PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  AHDC1 MUTATED                                                  0
  AHDC1 WILD-TYPE                                                2
D203V8, multiclass
                                                  clus
vv                                                 AHDC1 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                          6
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                        1
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA             0
                                                  clus
vv                                                 AHDC1 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                           59
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                          3
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA               2
D203V9, continuous
[1] "Remove cluster labels:" "AHDC1 MUTATED"         
clus
  AHDC1 MUTATED AHDC1 WILD-TYPE 
              2              20 
     TCGA-F2-6880      TCGA-FB-A4P5      TCGA-FB-A4P6      TCGA-FB-A5VM 
"AHDC1 WILD-TYPE" "AHDC1 WILD-TYPE" "AHDC1 WILD-TYPE" "AHDC1 WILD-TYPE" 
     TCGA-FB-A78T      TCGA-FB-A7DR      TCGA-H6-8124      TCGA-H8-A6C1 
"AHDC1 WILD-TYPE" "AHDC1 WILD-TYPE" "AHDC1 WILD-TYPE" "AHDC1 WILD-TYPE" 
     TCGA-IB-7644      TCGA-IB-7649      TCGA-IB-7885      TCGA-IB-7886 
"AHDC1 WILD-TYPE" "AHDC1 WILD-TYPE" "AHDC1 WILD-TYPE" "AHDC1 WILD-TYPE" 
     TCGA-IB-7887      TCGA-IB-7891      TCGA-IB-8126      TCGA-IB-8127 
"AHDC1 WILD-TYPE" "AHDC1 WILD-TYPE" "AHDC1 WILD-TYPE" "AHDC1 WILD-TYPE" 
     TCGA-IB-A5SS      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"AHDC1 WILD-TYPE" "AHDC1 WILD-TYPE" "AHDC1 WILD-TYPE" "AHDC1 WILD-TYPE" 
D203V10, continuous
[1] "Remove cluster labels:" "AHDC1 MUTATED"         
clus
  AHDC1 MUTATED AHDC1 WILD-TYPE 
              1              18 
     TCGA-FB-A4P5      TCGA-FB-A4P6      TCGA-FB-A5VM      TCGA-FB-A78T 
"AHDC1 WILD-TYPE" "AHDC1 WILD-TYPE" "AHDC1 WILD-TYPE" "AHDC1 WILD-TYPE" 
     TCGA-FB-A7DR      TCGA-H6-8124      TCGA-H8-A6C1      TCGA-IB-7644 
"AHDC1 WILD-TYPE" "AHDC1 WILD-TYPE" "AHDC1 WILD-TYPE" "AHDC1 WILD-TYPE" 
     TCGA-IB-7649      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7891 
"AHDC1 WILD-TYPE" "AHDC1 WILD-TYPE" "AHDC1 WILD-TYPE" "AHDC1 WILD-TYPE" 
     TCGA-IB-8126      TCGA-IB-8127      TCGA-IB-A5SS      TCGA-IB-A6UG 
"AHDC1 WILD-TYPE" "AHDC1 WILD-TYPE" "AHDC1 WILD-TYPE" "AHDC1 WILD-TYPE" 
     TCGA-LB-A7SX      TCGA-OE-A75W 
"AHDC1 WILD-TYPE" "AHDC1 WILD-TYPE" 
                 vv
clus              R0 R1 RX
  AHDC1 MUTATED    6  1  0
  AHDC1 WILD-TYPE 36 23  2
D203V11, multiclass
    clus
vv   AHDC1 MUTATED AHDC1 WILD-TYPE
  R0             6              36
  R1             1              23
  RX             0               2
D203V12, continuous

Clustering(204) Variable = CLOCK MUTATION ANALYSIS
D204V1, survival
                 sevent
clus2              0  1
  CLOCK MUTATED    5  4
  CLOCK WILD-TYPE 35 25
  CLOCK MUTATED CLOCK WILD-TYPE 
              9              60 
  CLOCK MUTATED CLOCK WILD-TYPE 
              4              25 
$`CLOCK MUTATED`
TCGA-FZ-5920 TCGA-HZ-7919 TCGA-HZ-8636 TCGA-HZ-A49G TCGA-HZ-A4BH TCGA-IB-7646 
        2.01         0.66         0.16         0.76         6.38         4.77 
TCGA-IB-7651 TCGA-IB-7891 TCGA-IB-7893 
       19.82        16.04         3.85 

$`CLOCK WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P5 TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR 
        0.13        11.93        12.66         2.47         0.03         5.46 
TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7289 
       36.20        20.81        12.89         7.66        13.02         7.89 
TCGA-HZ-7918 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 
        0.92         0.13         0.26        12.13        11.87         0.26 
TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 
        0.62         0.79         0.69         3.95         0.92         0.53 
TCGA-HZ-8638 TCGA-HZ-A49H TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7647 
        2.99         0.95         1.51        11.41        49.38        21.90 
TCGA-IB-7649 TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7888 
       15.35        15.65        27.98         4.04         3.62        43.79 
TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO 
       15.81        19.66        15.98         0.56        17.16        10.82 
TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX 
        9.86         7.20        15.12         0.26         1.35         4.18 
TCGA-OE-A75W TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
        3.62         8.12        13.68        16.80        14.14        18.67 

  CLOCK MUTATED CLOCK WILD-TYPE 
           0.16            0.03 
  CLOCK MUTATED CLOCK WILD-TYPE 
          19.82           49.38 
  CLOCK MUTATED CLOCK WILD-TYPE 
           3.85            8.91 
[1] "0.2 - 19.8 (3.9)" "0.0 - 49.4 (8.9)"
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"CLOCK WILD-TYPE" "CLOCK WILD-TYPE" "CLOCK WILD-TYPE" "CLOCK WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"CLOCK WILD-TYPE" "CLOCK WILD-TYPE" "CLOCK WILD-TYPE" "CLOCK WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"CLOCK WILD-TYPE" "CLOCK WILD-TYPE" "CLOCK WILD-TYPE" "CLOCK WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
  "CLOCK MUTATED" "CLOCK WILD-TYPE" "CLOCK WILD-TYPE" "CLOCK WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"CLOCK WILD-TYPE" "CLOCK WILD-TYPE" "CLOCK WILD-TYPE" "CLOCK WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
  "CLOCK MUTATED" "CLOCK WILD-TYPE" "CLOCK WILD-TYPE" "CLOCK WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"CLOCK WILD-TYPE" "CLOCK WILD-TYPE" "CLOCK WILD-TYPE" "CLOCK WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"CLOCK WILD-TYPE" "CLOCK WILD-TYPE" "CLOCK WILD-TYPE" "CLOCK WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
  "CLOCK MUTATED" "CLOCK WILD-TYPE"   "CLOCK MUTATED" "CLOCK WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
  "CLOCK MUTATED" "CLOCK WILD-TYPE" "CLOCK WILD-TYPE" "CLOCK WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
  "CLOCK MUTATED" "CLOCK WILD-TYPE" "CLOCK WILD-TYPE"   "CLOCK MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"CLOCK WILD-TYPE" "CLOCK WILD-TYPE" "CLOCK WILD-TYPE" "CLOCK WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"CLOCK WILD-TYPE" "CLOCK WILD-TYPE" "CLOCK WILD-TYPE"   "CLOCK MUTATED" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
  "CLOCK MUTATED" "CLOCK WILD-TYPE" "CLOCK WILD-TYPE" "CLOCK WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"CLOCK WILD-TYPE" "CLOCK WILD-TYPE" "CLOCK WILD-TYPE" "CLOCK WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"CLOCK WILD-TYPE" "CLOCK WILD-TYPE" "CLOCK WILD-TYPE" "CLOCK WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"CLOCK WILD-TYPE" "CLOCK WILD-TYPE" "CLOCK WILD-TYPE" "CLOCK WILD-TYPE" 
     TCGA-US-A77J 
"CLOCK WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"CLOCK WILD-TYPE" "CLOCK WILD-TYPE" "CLOCK WILD-TYPE" "CLOCK WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"CLOCK WILD-TYPE" "CLOCK WILD-TYPE" "CLOCK WILD-TYPE" "CLOCK WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"CLOCK WILD-TYPE" "CLOCK WILD-TYPE" "CLOCK WILD-TYPE" "CLOCK WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
  "CLOCK MUTATED" "CLOCK WILD-TYPE" "CLOCK WILD-TYPE" "CLOCK WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"CLOCK WILD-TYPE" "CLOCK WILD-TYPE" "CLOCK WILD-TYPE" "CLOCK WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
  "CLOCK MUTATED" "CLOCK WILD-TYPE" "CLOCK WILD-TYPE" "CLOCK WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"CLOCK WILD-TYPE" "CLOCK WILD-TYPE" "CLOCK WILD-TYPE" "CLOCK WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"CLOCK WILD-TYPE" "CLOCK WILD-TYPE" "CLOCK WILD-TYPE" "CLOCK WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
  "CLOCK MUTATED" "CLOCK WILD-TYPE"   "CLOCK MUTATED" "CLOCK WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
  "CLOCK MUTATED" "CLOCK WILD-TYPE" "CLOCK WILD-TYPE" "CLOCK WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
  "CLOCK MUTATED" "CLOCK WILD-TYPE" "CLOCK WILD-TYPE"   "CLOCK MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"CLOCK WILD-TYPE" "CLOCK WILD-TYPE" "CLOCK WILD-TYPE" "CLOCK WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"CLOCK WILD-TYPE" "CLOCK WILD-TYPE" "CLOCK WILD-TYPE"   "CLOCK MUTATED" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
  "CLOCK MUTATED" "CLOCK WILD-TYPE" "CLOCK WILD-TYPE" "CLOCK WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"CLOCK WILD-TYPE" "CLOCK WILD-TYPE" "CLOCK WILD-TYPE" "CLOCK WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"CLOCK WILD-TYPE" "CLOCK WILD-TYPE" "CLOCK WILD-TYPE" "CLOCK WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"CLOCK WILD-TYPE" "CLOCK WILD-TYPE" "CLOCK WILD-TYPE" "CLOCK WILD-TYPE" 
     TCGA-US-A77J 
"CLOCK WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"CLOCK WILD-TYPE" "CLOCK WILD-TYPE" "CLOCK WILD-TYPE" "CLOCK WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"CLOCK WILD-TYPE" "CLOCK WILD-TYPE" "CLOCK WILD-TYPE" "CLOCK WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"CLOCK WILD-TYPE" "CLOCK WILD-TYPE" "CLOCK WILD-TYPE" "CLOCK WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
  "CLOCK MUTATED" "CLOCK WILD-TYPE" "CLOCK WILD-TYPE" "CLOCK WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"CLOCK WILD-TYPE" "CLOCK WILD-TYPE" "CLOCK WILD-TYPE" "CLOCK WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
  "CLOCK MUTATED" "CLOCK WILD-TYPE" "CLOCK WILD-TYPE" "CLOCK WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"CLOCK WILD-TYPE" "CLOCK WILD-TYPE" "CLOCK WILD-TYPE" "CLOCK WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"CLOCK WILD-TYPE" "CLOCK WILD-TYPE" "CLOCK WILD-TYPE" "CLOCK WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
  "CLOCK MUTATED" "CLOCK WILD-TYPE"   "CLOCK MUTATED" "CLOCK WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
  "CLOCK MUTATED" "CLOCK WILD-TYPE" "CLOCK WILD-TYPE" "CLOCK WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
  "CLOCK MUTATED" "CLOCK WILD-TYPE" "CLOCK WILD-TYPE"   "CLOCK MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"CLOCK WILD-TYPE" "CLOCK WILD-TYPE" "CLOCK WILD-TYPE" "CLOCK WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"CLOCK WILD-TYPE" "CLOCK WILD-TYPE" "CLOCK WILD-TYPE"   "CLOCK MUTATED" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
  "CLOCK MUTATED" "CLOCK WILD-TYPE" "CLOCK WILD-TYPE" "CLOCK WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"CLOCK WILD-TYPE" "CLOCK WILD-TYPE" "CLOCK WILD-TYPE" "CLOCK WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"CLOCK WILD-TYPE" "CLOCK WILD-TYPE" "CLOCK WILD-TYPE" "CLOCK WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"CLOCK WILD-TYPE" "CLOCK WILD-TYPE" "CLOCK WILD-TYPE" "CLOCK WILD-TYPE" 
     TCGA-US-A77J 
"CLOCK WILD-TYPE" 
[1] "hr=" "1.8"
D204V2, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  CLOCK MUTATED          0        0         1         7         0        1
  CLOCK WILD-TYPE        1        4        10        44         2        2
D204V3, multiclass
                 vv
clus              T1+T2 T3+T4
  CLOCK MUTATED       1     8
  CLOCK WILD-TYPE     5    58
D204V4, multiclass
       clus
vv      CLOCK MUTATED CLOCK WILD-TYPE
  T1+T2             1               5
  T3+T4             8              58
D204V5, binary
                 cls
clus               0  1
  CLOCK MUTATED    2  7
  CLOCK WILD-TYPE 15 47
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CLOCK MUTATED      2    7
  CLOCK WILD-TYPE   15   47
   clus
vv  CLOCK MUTATED CLOCK WILD-TYPE
  0             2              15
  1             7              47
                 vv
clus              M0 M1 MX
  CLOCK MUTATED    6  1  2
  CLOCK WILD-TYPE 33  2 28
D204V6, multiclass
    clus
vv   CLOCK MUTATED CLOCK WILD-TYPE
  M0             6              33
  M1             1               2
  MX             2              28
D204V7, binary
                 cls
clus               0  1
  CLOCK MUTATED    4  5
  CLOCK WILD-TYPE 32 31
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CLOCK MUTATED      4    5
  CLOCK WILD-TYPE   32   31
        clus
vv       CLOCK MUTATED CLOCK WILD-TYPE
  FEMALE             4              32
  MALE               5              31
                 vv
clus              PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  CLOCK MUTATED                                     9
  CLOCK WILD-TYPE                                  56
                 vv
clus              PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  CLOCK MUTATED                                       0
  CLOCK WILD-TYPE                                     4
                 vv
clus              PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  CLOCK MUTATED                                                  0
  CLOCK WILD-TYPE                                                2
D204V8, multiclass
                                                  clus
vv                                                 CLOCK MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                          9
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                        0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA             0
                                                  clus
vv                                                 CLOCK WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                           56
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                          4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA               2
D204V9, continuous
[1] "Remove cluster labels:" "CLOCK MUTATED"         
clus
  CLOCK MUTATED CLOCK WILD-TYPE 
              2              20 
     TCGA-F2-6880      TCGA-FB-A4P5      TCGA-FB-A4P6      TCGA-FB-A5VM 
"CLOCK WILD-TYPE" "CLOCK WILD-TYPE" "CLOCK WILD-TYPE" "CLOCK WILD-TYPE" 
     TCGA-FB-A78T      TCGA-FB-A7DR      TCGA-H6-8124      TCGA-H6-A45N 
"CLOCK WILD-TYPE" "CLOCK WILD-TYPE" "CLOCK WILD-TYPE" "CLOCK WILD-TYPE" 
     TCGA-H8-A6C1      TCGA-IB-7644      TCGA-IB-7649      TCGA-IB-7885 
"CLOCK WILD-TYPE" "CLOCK WILD-TYPE" "CLOCK WILD-TYPE" "CLOCK WILD-TYPE" 
     TCGA-IB-7886      TCGA-IB-7887      TCGA-IB-8126      TCGA-IB-8127 
"CLOCK WILD-TYPE" "CLOCK WILD-TYPE" "CLOCK WILD-TYPE" "CLOCK WILD-TYPE" 
     TCGA-IB-A5SS      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"CLOCK WILD-TYPE" "CLOCK WILD-TYPE" "CLOCK WILD-TYPE" "CLOCK WILD-TYPE" 
D204V10, continuous
[1] "Remove cluster labels:" "CLOCK MUTATED"         
clus
  CLOCK MUTATED CLOCK WILD-TYPE 
              2              17 
     TCGA-FB-A4P5      TCGA-FB-A4P6      TCGA-FB-A5VM      TCGA-FB-A78T 
"CLOCK WILD-TYPE" "CLOCK WILD-TYPE" "CLOCK WILD-TYPE" "CLOCK WILD-TYPE" 
     TCGA-FB-A7DR      TCGA-H6-8124      TCGA-H8-A6C1      TCGA-IB-7644 
"CLOCK WILD-TYPE" "CLOCK WILD-TYPE" "CLOCK WILD-TYPE" "CLOCK WILD-TYPE" 
     TCGA-IB-7649      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-8126 
"CLOCK WILD-TYPE" "CLOCK WILD-TYPE" "CLOCK WILD-TYPE" "CLOCK WILD-TYPE" 
     TCGA-IB-8127      TCGA-IB-A5SS      TCGA-IB-A6UG      TCGA-LB-A7SX 
"CLOCK WILD-TYPE" "CLOCK WILD-TYPE" "CLOCK WILD-TYPE" "CLOCK WILD-TYPE" 
     TCGA-OE-A75W 
"CLOCK WILD-TYPE" 
                 vv
clus              R0 R1 RX
  CLOCK MUTATED    4  5  0
  CLOCK WILD-TYPE 38 19  2
D204V11, multiclass
    clus
vv   CLOCK MUTATED CLOCK WILD-TYPE
  R0             4              38
  R1             5              19
  RX             0               2
D204V12, continuous

Clustering(205) Variable = LRIG1 MUTATION ANALYSIS
D205V1, survival
                 sevent
clus2              0  1
  LRIG1 MUTATED    6  3
  LRIG1 WILD-TYPE 34 26
  LRIG1 MUTATED LRIG1 WILD-TYPE 
              9              60 
  LRIG1 MUTATED LRIG1 WILD-TYPE 
              3              26 
$`LRIG1 MUTATED`
TCGA-FB-A545 TCGA-HZ-7919 TCGA-HZ-8003 TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7651 
       12.66         0.66         0.69        49.38         4.77        19.82 
TCGA-IB-7891 TCGA-IB-8126 TCGA-PZ-A5RE 
       16.04         0.56         8.12 

$`LRIG1 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P5 TCGA-FB-A4P6 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR TCGA-FZ-5920 
        0.13        11.93         2.47         0.03         5.46         2.01 
TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7289 
       36.20        20.81        12.89         7.66        13.02         7.89 
TCGA-HZ-7918 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 
        0.92         0.13         0.26        12.13        11.87         0.26 
TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8636 
        0.62         0.79         3.95         0.92         0.53         0.16 
TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 
        2.99         0.76         0.95         6.38         1.51        11.41 
TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 
       21.90        15.35        15.65        27.98         4.04         3.62 
TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-8127 
       43.79        15.81        19.66         3.85        15.98        17.16 
TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG 
       10.82         9.86         7.20        15.12         0.26         1.35 
TCGA-LB-A7SX TCGA-OE-A75W TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
        4.18         3.62        13.68        16.80        14.14        18.67 

  LRIG1 MUTATED LRIG1 WILD-TYPE 
           0.56            0.03 
  LRIG1 MUTATED LRIG1 WILD-TYPE 
          49.38           43.79 
  LRIG1 MUTATED LRIG1 WILD-TYPE 
           8.12            7.43 
[1] "0.6 - 49.4 (8.1)" "0.0 - 43.8 (7.4)"
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"LRIG1 WILD-TYPE" "LRIG1 WILD-TYPE" "LRIG1 WILD-TYPE" "LRIG1 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"LRIG1 WILD-TYPE" "LRIG1 WILD-TYPE" "LRIG1 WILD-TYPE" "LRIG1 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
  "LRIG1 MUTATED" "LRIG1 WILD-TYPE" "LRIG1 WILD-TYPE" "LRIG1 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"LRIG1 WILD-TYPE" "LRIG1 WILD-TYPE" "LRIG1 WILD-TYPE" "LRIG1 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"LRIG1 WILD-TYPE" "LRIG1 WILD-TYPE" "LRIG1 WILD-TYPE" "LRIG1 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
  "LRIG1 MUTATED" "LRIG1 WILD-TYPE" "LRIG1 WILD-TYPE" "LRIG1 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"LRIG1 WILD-TYPE" "LRIG1 WILD-TYPE" "LRIG1 WILD-TYPE" "LRIG1 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
  "LRIG1 MUTATED" "LRIG1 WILD-TYPE" "LRIG1 WILD-TYPE" "LRIG1 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"LRIG1 WILD-TYPE" "LRIG1 WILD-TYPE" "LRIG1 WILD-TYPE" "LRIG1 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"LRIG1 WILD-TYPE" "LRIG1 WILD-TYPE" "LRIG1 WILD-TYPE"   "LRIG1 MUTATED" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
  "LRIG1 MUTATED" "LRIG1 WILD-TYPE" "LRIG1 WILD-TYPE"   "LRIG1 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"LRIG1 WILD-TYPE" "LRIG1 WILD-TYPE" "LRIG1 WILD-TYPE" "LRIG1 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"LRIG1 WILD-TYPE" "LRIG1 WILD-TYPE" "LRIG1 WILD-TYPE"   "LRIG1 MUTATED" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"LRIG1 WILD-TYPE" "LRIG1 WILD-TYPE"   "LRIG1 MUTATED" "LRIG1 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"LRIG1 WILD-TYPE" "LRIG1 WILD-TYPE" "LRIG1 WILD-TYPE" "LRIG1 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"LRIG1 WILD-TYPE" "LRIG1 WILD-TYPE" "LRIG1 WILD-TYPE" "LRIG1 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
  "LRIG1 MUTATED" "LRIG1 WILD-TYPE" "LRIG1 WILD-TYPE" "LRIG1 WILD-TYPE" 
     TCGA-US-A77J 
"LRIG1 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"LRIG1 WILD-TYPE" "LRIG1 WILD-TYPE" "LRIG1 WILD-TYPE" "LRIG1 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"LRIG1 WILD-TYPE" "LRIG1 WILD-TYPE" "LRIG1 WILD-TYPE" "LRIG1 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
  "LRIG1 MUTATED" "LRIG1 WILD-TYPE" "LRIG1 WILD-TYPE" "LRIG1 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"LRIG1 WILD-TYPE" "LRIG1 WILD-TYPE" "LRIG1 WILD-TYPE" "LRIG1 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"LRIG1 WILD-TYPE" "LRIG1 WILD-TYPE" "LRIG1 WILD-TYPE" "LRIG1 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
  "LRIG1 MUTATED" "LRIG1 WILD-TYPE" "LRIG1 WILD-TYPE" "LRIG1 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"LRIG1 WILD-TYPE" "LRIG1 WILD-TYPE" "LRIG1 WILD-TYPE" "LRIG1 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
  "LRIG1 MUTATED" "LRIG1 WILD-TYPE" "LRIG1 WILD-TYPE" "LRIG1 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"LRIG1 WILD-TYPE" "LRIG1 WILD-TYPE" "LRIG1 WILD-TYPE" "LRIG1 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"LRIG1 WILD-TYPE" "LRIG1 WILD-TYPE" "LRIG1 WILD-TYPE"   "LRIG1 MUTATED" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
  "LRIG1 MUTATED" "LRIG1 WILD-TYPE" "LRIG1 WILD-TYPE"   "LRIG1 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"LRIG1 WILD-TYPE" "LRIG1 WILD-TYPE" "LRIG1 WILD-TYPE" "LRIG1 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"LRIG1 WILD-TYPE" "LRIG1 WILD-TYPE" "LRIG1 WILD-TYPE"   "LRIG1 MUTATED" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"LRIG1 WILD-TYPE" "LRIG1 WILD-TYPE"   "LRIG1 MUTATED" "LRIG1 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"LRIG1 WILD-TYPE" "LRIG1 WILD-TYPE" "LRIG1 WILD-TYPE" "LRIG1 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"LRIG1 WILD-TYPE" "LRIG1 WILD-TYPE" "LRIG1 WILD-TYPE" "LRIG1 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
  "LRIG1 MUTATED" "LRIG1 WILD-TYPE" "LRIG1 WILD-TYPE" "LRIG1 WILD-TYPE" 
     TCGA-US-A77J 
"LRIG1 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"LRIG1 WILD-TYPE" "LRIG1 WILD-TYPE" "LRIG1 WILD-TYPE" "LRIG1 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"LRIG1 WILD-TYPE" "LRIG1 WILD-TYPE" "LRIG1 WILD-TYPE" "LRIG1 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
  "LRIG1 MUTATED" "LRIG1 WILD-TYPE" "LRIG1 WILD-TYPE" "LRIG1 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"LRIG1 WILD-TYPE" "LRIG1 WILD-TYPE" "LRIG1 WILD-TYPE" "LRIG1 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"LRIG1 WILD-TYPE" "LRIG1 WILD-TYPE" "LRIG1 WILD-TYPE" "LRIG1 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
  "LRIG1 MUTATED" "LRIG1 WILD-TYPE" "LRIG1 WILD-TYPE" "LRIG1 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"LRIG1 WILD-TYPE" "LRIG1 WILD-TYPE" "LRIG1 WILD-TYPE" "LRIG1 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
  "LRIG1 MUTATED" "LRIG1 WILD-TYPE" "LRIG1 WILD-TYPE" "LRIG1 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"LRIG1 WILD-TYPE" "LRIG1 WILD-TYPE" "LRIG1 WILD-TYPE" "LRIG1 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"LRIG1 WILD-TYPE" "LRIG1 WILD-TYPE" "LRIG1 WILD-TYPE"   "LRIG1 MUTATED" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
  "LRIG1 MUTATED" "LRIG1 WILD-TYPE" "LRIG1 WILD-TYPE"   "LRIG1 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"LRIG1 WILD-TYPE" "LRIG1 WILD-TYPE" "LRIG1 WILD-TYPE" "LRIG1 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"LRIG1 WILD-TYPE" "LRIG1 WILD-TYPE" "LRIG1 WILD-TYPE"   "LRIG1 MUTATED" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"LRIG1 WILD-TYPE" "LRIG1 WILD-TYPE"   "LRIG1 MUTATED" "LRIG1 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"LRIG1 WILD-TYPE" "LRIG1 WILD-TYPE" "LRIG1 WILD-TYPE" "LRIG1 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"LRIG1 WILD-TYPE" "LRIG1 WILD-TYPE" "LRIG1 WILD-TYPE" "LRIG1 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
  "LRIG1 MUTATED" "LRIG1 WILD-TYPE" "LRIG1 WILD-TYPE" "LRIG1 WILD-TYPE" 
     TCGA-US-A77J 
"LRIG1 WILD-TYPE" 
[1] "hr=" "3"  
D205V2, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  LRIG1 MUTATED          0        1         0         8         1        0
  LRIG1 WILD-TYPE        1        3        11        43         1        3
D205V3, multiclass
                 vv
clus              T1+T2 T3+T4
  LRIG1 MUTATED       1     9
  LRIG1 WILD-TYPE     5    57
D205V4, multiclass
       clus
vv      LRIG1 MUTATED LRIG1 WILD-TYPE
  T1+T2             1               5
  T3+T4             9              57
D205V5, binary
                 cls
clus               0  1
  LRIG1 MUTATED    1  9
  LRIG1 WILD-TYPE 16 45
[1] "tbl2"
                 cls
clus              [,1] [,2]
  LRIG1 MUTATED      1    9
  LRIG1 WILD-TYPE   16   45
   clus
vv  LRIG1 MUTATED LRIG1 WILD-TYPE
  0             1              16
  1             9              45
                 vv
clus              M0 M1 MX
  LRIG1 MUTATED    7  0  3
  LRIG1 WILD-TYPE 32  3 27
D205V6, multiclass
    clus
vv   LRIG1 MUTATED LRIG1 WILD-TYPE
  M0             7              32
  M1             0               3
  MX             3              27
D205V7, binary
                 cls
clus               0  1
  LRIG1 MUTATED    7  3
  LRIG1 WILD-TYPE 29 33
[1] "tbl2"
                 cls
clus              [,1] [,2]
  LRIG1 MUTATED      7    3
  LRIG1 WILD-TYPE   29   33
        clus
vv       LRIG1 MUTATED LRIG1 WILD-TYPE
  FEMALE             7              29
  MALE               3              33
                 vv
clus              PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  LRIG1 MUTATED                                    10
  LRIG1 WILD-TYPE                                  55
                 vv
clus              PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  LRIG1 MUTATED                                       0
  LRIG1 WILD-TYPE                                     4
                 vv
clus              PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  LRIG1 MUTATED                                                  0
  LRIG1 WILD-TYPE                                                2
D205V8, multiclass
                                                  clus
vv                                                 LRIG1 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                         10
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                        0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA             0
                                                  clus
vv                                                 LRIG1 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                           55
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                          4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA               2
D205V9, continuous
D205V10, continuous
                 vv
clus              R0 R1 RX
  LRIG1 MUTATED    5  3  0
  LRIG1 WILD-TYPE 37 21  2
D205V11, multiclass
    clus
vv   LRIG1 MUTATED LRIG1 WILD-TYPE
  R0             5              37
  R1             3              21
  RX             0               2
D205V12, continuous

Clustering(206) Variable = SEPT10 MUTATION ANALYSIS
D206V1, survival
                  sevent
clus2               0  1
  SEPT10 MUTATED    4  3
  SEPT10 WILD-TYPE 36 26
  SEPT10 MUTATED SEPT10 WILD-TYPE 
               7               62 
  SEPT10 MUTATED SEPT10 WILD-TYPE 
               3               26 
$`SEPT10 MUTATED`
TCGA-F2-A44H TCGA-H6-A45N TCGA-HZ-8005 TCGA-HZ-A49G TCGA-HZ-A4BH TCGA-IB-7651 
       19.27         7.66         3.95         0.76         6.38        19.82 
TCGA-Q3-A5QY 
       13.68 

$`SEPT10 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-FB-A4P5 
       10.98         9.70        11.84         7.10         5.03         0.13 
TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR TCGA-FZ-5920 
       11.93        12.66         2.47         0.03         5.46         2.01 
TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 TCGA-H8-A6C1 TCGA-HZ-7289 TCGA-HZ-7918 
       36.20        20.81        12.89        13.02         7.89         0.92 
TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 
        0.66         0.13         0.26        12.13        11.87         0.26 
TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8636 
        0.62         0.79         0.69         0.92         0.53         0.16 
TCGA-HZ-8638 TCGA-HZ-A49H TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7646 
        2.99         0.95         1.51        11.41        49.38         4.77 
TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 
       21.90        15.35        15.65        27.98         4.04         3.62 
TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-7897 
       43.79        15.81        19.66        16.04         3.85        15.98 
TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS 
        0.56        17.16        10.82         9.86         7.20        15.12 
TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W TCGA-PZ-A5RE TCGA-US-A779 
        0.26         1.35         4.18         3.62         8.12        16.80 
TCGA-US-A77E TCGA-US-A77J 
       14.14        18.67 

  SEPT10 MUTATED SEPT10 WILD-TYPE 
            0.76             0.03 
  SEPT10 MUTATED SEPT10 WILD-TYPE 
           19.82            49.38 
  SEPT10 MUTATED SEPT10 WILD-TYPE 
           7.660            7.545 
[1] "0.8 - 19.8 (7.7)" "0.0 - 49.4 (7.5)"
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
"SEPT10 WILD-TYPE" "SEPT10 WILD-TYPE" "SEPT10 WILD-TYPE" "SEPT10 WILD-TYPE" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"SEPT10 WILD-TYPE"   "SEPT10 MUTATED" "SEPT10 WILD-TYPE" "SEPT10 WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
"SEPT10 WILD-TYPE" "SEPT10 WILD-TYPE" "SEPT10 WILD-TYPE" "SEPT10 WILD-TYPE" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"SEPT10 WILD-TYPE" "SEPT10 WILD-TYPE" "SEPT10 WILD-TYPE" "SEPT10 WILD-TYPE" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
  "SEPT10 MUTATED" "SEPT10 WILD-TYPE" "SEPT10 WILD-TYPE" "SEPT10 WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
"SEPT10 WILD-TYPE" "SEPT10 WILD-TYPE" "SEPT10 WILD-TYPE" "SEPT10 WILD-TYPE" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"SEPT10 WILD-TYPE" "SEPT10 WILD-TYPE" "SEPT10 WILD-TYPE" "SEPT10 WILD-TYPE" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
"SEPT10 WILD-TYPE"   "SEPT10 MUTATED" "SEPT10 WILD-TYPE" "SEPT10 WILD-TYPE" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
"SEPT10 WILD-TYPE" "SEPT10 WILD-TYPE"   "SEPT10 MUTATED" "SEPT10 WILD-TYPE" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
  "SEPT10 MUTATED" "SEPT10 WILD-TYPE" "SEPT10 WILD-TYPE" "SEPT10 WILD-TYPE" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
"SEPT10 WILD-TYPE" "SEPT10 WILD-TYPE" "SEPT10 WILD-TYPE"   "SEPT10 MUTATED" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
"SEPT10 WILD-TYPE" "SEPT10 WILD-TYPE" "SEPT10 WILD-TYPE" "SEPT10 WILD-TYPE" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
"SEPT10 WILD-TYPE" "SEPT10 WILD-TYPE" "SEPT10 WILD-TYPE" "SEPT10 WILD-TYPE" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
"SEPT10 WILD-TYPE" "SEPT10 WILD-TYPE" "SEPT10 WILD-TYPE" "SEPT10 WILD-TYPE" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"SEPT10 WILD-TYPE" "SEPT10 WILD-TYPE" "SEPT10 WILD-TYPE" "SEPT10 WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"SEPT10 WILD-TYPE" "SEPT10 WILD-TYPE" "SEPT10 WILD-TYPE" "SEPT10 WILD-TYPE" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
"SEPT10 WILD-TYPE"   "SEPT10 MUTATED" "SEPT10 WILD-TYPE" "SEPT10 WILD-TYPE" 
      TCGA-US-A77J 
"SEPT10 WILD-TYPE" 
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
"SEPT10 WILD-TYPE" "SEPT10 WILD-TYPE" "SEPT10 WILD-TYPE" "SEPT10 WILD-TYPE" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"SEPT10 WILD-TYPE"   "SEPT10 MUTATED" "SEPT10 WILD-TYPE" "SEPT10 WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
"SEPT10 WILD-TYPE" "SEPT10 WILD-TYPE" "SEPT10 WILD-TYPE" "SEPT10 WILD-TYPE" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"SEPT10 WILD-TYPE" "SEPT10 WILD-TYPE" "SEPT10 WILD-TYPE" "SEPT10 WILD-TYPE" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
  "SEPT10 MUTATED" "SEPT10 WILD-TYPE" "SEPT10 WILD-TYPE" "SEPT10 WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
"SEPT10 WILD-TYPE" "SEPT10 WILD-TYPE" "SEPT10 WILD-TYPE" "SEPT10 WILD-TYPE" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"SEPT10 WILD-TYPE" "SEPT10 WILD-TYPE" "SEPT10 WILD-TYPE" "SEPT10 WILD-TYPE" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
"SEPT10 WILD-TYPE"   "SEPT10 MUTATED" "SEPT10 WILD-TYPE" "SEPT10 WILD-TYPE" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
"SEPT10 WILD-TYPE" "SEPT10 WILD-TYPE"   "SEPT10 MUTATED" "SEPT10 WILD-TYPE" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
  "SEPT10 MUTATED" "SEPT10 WILD-TYPE" "SEPT10 WILD-TYPE" "SEPT10 WILD-TYPE" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
"SEPT10 WILD-TYPE" "SEPT10 WILD-TYPE" "SEPT10 WILD-TYPE"   "SEPT10 MUTATED" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
"SEPT10 WILD-TYPE" "SEPT10 WILD-TYPE" "SEPT10 WILD-TYPE" "SEPT10 WILD-TYPE" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
"SEPT10 WILD-TYPE" "SEPT10 WILD-TYPE" "SEPT10 WILD-TYPE" "SEPT10 WILD-TYPE" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
"SEPT10 WILD-TYPE" "SEPT10 WILD-TYPE" "SEPT10 WILD-TYPE" "SEPT10 WILD-TYPE" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"SEPT10 WILD-TYPE" "SEPT10 WILD-TYPE" "SEPT10 WILD-TYPE" "SEPT10 WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"SEPT10 WILD-TYPE" "SEPT10 WILD-TYPE" "SEPT10 WILD-TYPE" "SEPT10 WILD-TYPE" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
"SEPT10 WILD-TYPE"   "SEPT10 MUTATED" "SEPT10 WILD-TYPE" "SEPT10 WILD-TYPE" 
      TCGA-US-A77J 
"SEPT10 WILD-TYPE" 
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
"SEPT10 WILD-TYPE" "SEPT10 WILD-TYPE" "SEPT10 WILD-TYPE" "SEPT10 WILD-TYPE" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"SEPT10 WILD-TYPE"   "SEPT10 MUTATED" "SEPT10 WILD-TYPE" "SEPT10 WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
"SEPT10 WILD-TYPE" "SEPT10 WILD-TYPE" "SEPT10 WILD-TYPE" "SEPT10 WILD-TYPE" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"SEPT10 WILD-TYPE" "SEPT10 WILD-TYPE" "SEPT10 WILD-TYPE" "SEPT10 WILD-TYPE" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
  "SEPT10 MUTATED" "SEPT10 WILD-TYPE" "SEPT10 WILD-TYPE" "SEPT10 WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
"SEPT10 WILD-TYPE" "SEPT10 WILD-TYPE" "SEPT10 WILD-TYPE" "SEPT10 WILD-TYPE" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"SEPT10 WILD-TYPE" "SEPT10 WILD-TYPE" "SEPT10 WILD-TYPE" "SEPT10 WILD-TYPE" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
"SEPT10 WILD-TYPE"   "SEPT10 MUTATED" "SEPT10 WILD-TYPE" "SEPT10 WILD-TYPE" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
"SEPT10 WILD-TYPE" "SEPT10 WILD-TYPE"   "SEPT10 MUTATED" "SEPT10 WILD-TYPE" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
  "SEPT10 MUTATED" "SEPT10 WILD-TYPE" "SEPT10 WILD-TYPE" "SEPT10 WILD-TYPE" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
"SEPT10 WILD-TYPE" "SEPT10 WILD-TYPE" "SEPT10 WILD-TYPE"   "SEPT10 MUTATED" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
"SEPT10 WILD-TYPE" "SEPT10 WILD-TYPE" "SEPT10 WILD-TYPE" "SEPT10 WILD-TYPE" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
"SEPT10 WILD-TYPE" "SEPT10 WILD-TYPE" "SEPT10 WILD-TYPE" "SEPT10 WILD-TYPE" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
"SEPT10 WILD-TYPE" "SEPT10 WILD-TYPE" "SEPT10 WILD-TYPE" "SEPT10 WILD-TYPE" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"SEPT10 WILD-TYPE" "SEPT10 WILD-TYPE" "SEPT10 WILD-TYPE" "SEPT10 WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"SEPT10 WILD-TYPE" "SEPT10 WILD-TYPE" "SEPT10 WILD-TYPE" "SEPT10 WILD-TYPE" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
"SEPT10 WILD-TYPE"   "SEPT10 MUTATED" "SEPT10 WILD-TYPE" "SEPT10 WILD-TYPE" 
      TCGA-US-A77J 
"SEPT10 WILD-TYPE" 
[1] "hr=" "1"  
D206V2, continuous
                  vv
clus               STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  SEPT10 MUTATED          0        0         1         6         0        0
  SEPT10 WILD-TYPE        1        4        10        45         2        3
D206V3, multiclass
                  vv
clus               T1+T2 T3+T4
  SEPT10 MUTATED       1     6
  SEPT10 WILD-TYPE     5    60
D206V4, multiclass
       clus
vv      SEPT10 MUTATED SEPT10 WILD-TYPE
  T1+T2              1                5
  T3+T4              6               60
D206V5, binary
                  cls
clus                0  1
  SEPT10 MUTATED    1  6
  SEPT10 WILD-TYPE 16 48
[1] "tbl2"
                  cls
clus               [,1] [,2]
  SEPT10 MUTATED      1    6
  SEPT10 WILD-TYPE   16   48
   clus
vv  SEPT10 MUTATED SEPT10 WILD-TYPE
  0              1               16
  1              6               48
                  vv
clus               M0 M1 MX
  SEPT10 MUTATED    2  0  5
  SEPT10 WILD-TYPE 37  3 25
D206V6, multiclass
    clus
vv   SEPT10 MUTATED SEPT10 WILD-TYPE
  M0              2               37
  M1              0                3
  MX              5               25
D206V7, binary
                  cls
clus                0  1
  SEPT10 MUTATED    3  4
  SEPT10 WILD-TYPE 33 32
[1] "tbl2"
                  cls
clus               [,1] [,2]
  SEPT10 MUTATED      3    4
  SEPT10 WILD-TYPE   33   32
        clus
vv       SEPT10 MUTATED SEPT10 WILD-TYPE
  FEMALE              3               33
  MALE                4               32
                  vv
clus               PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  SEPT10 MUTATED                                     6
  SEPT10 WILD-TYPE                                  59
                  vv
clus               PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  SEPT10 MUTATED                                       1
  SEPT10 WILD-TYPE                                     3
                  vv
clus               PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  SEPT10 MUTATED                                                  0
  SEPT10 WILD-TYPE                                                2
D206V8, multiclass
                                                  clus
vv                                                 SEPT10 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                           6
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                         1
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA              0
                                                  clus
vv                                                 SEPT10 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                            59
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                           3
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                2
D206V9, continuous
[1] "Remove cluster labels:" "SEPT10 MUTATED"        
clus
  SEPT10 MUTATED SEPT10 WILD-TYPE 
               2               20 
      TCGA-F2-6880       TCGA-FB-A4P5       TCGA-FB-A4P6       TCGA-FB-A5VM 
"SEPT10 WILD-TYPE" "SEPT10 WILD-TYPE" "SEPT10 WILD-TYPE" "SEPT10 WILD-TYPE" 
      TCGA-FB-A78T       TCGA-FB-A7DR       TCGA-H6-8124       TCGA-H8-A6C1 
"SEPT10 WILD-TYPE" "SEPT10 WILD-TYPE" "SEPT10 WILD-TYPE" "SEPT10 WILD-TYPE" 
      TCGA-IB-7644       TCGA-IB-7649       TCGA-IB-7885       TCGA-IB-7886 
"SEPT10 WILD-TYPE" "SEPT10 WILD-TYPE" "SEPT10 WILD-TYPE" "SEPT10 WILD-TYPE" 
      TCGA-IB-7887       TCGA-IB-7891       TCGA-IB-8126       TCGA-IB-8127 
"SEPT10 WILD-TYPE" "SEPT10 WILD-TYPE" "SEPT10 WILD-TYPE" "SEPT10 WILD-TYPE" 
      TCGA-IB-A5SS       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"SEPT10 WILD-TYPE" "SEPT10 WILD-TYPE" "SEPT10 WILD-TYPE" "SEPT10 WILD-TYPE" 
D206V10, continuous
[1] "Remove cluster labels:" "SEPT10 MUTATED"        
clus
  SEPT10 MUTATED SEPT10 WILD-TYPE 
               1               18 
      TCGA-FB-A4P5       TCGA-FB-A4P6       TCGA-FB-A5VM       TCGA-FB-A78T 
"SEPT10 WILD-TYPE" "SEPT10 WILD-TYPE" "SEPT10 WILD-TYPE" "SEPT10 WILD-TYPE" 
      TCGA-FB-A7DR       TCGA-H6-8124       TCGA-H8-A6C1       TCGA-IB-7644 
"SEPT10 WILD-TYPE" "SEPT10 WILD-TYPE" "SEPT10 WILD-TYPE" "SEPT10 WILD-TYPE" 
      TCGA-IB-7649       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7891 
"SEPT10 WILD-TYPE" "SEPT10 WILD-TYPE" "SEPT10 WILD-TYPE" "SEPT10 WILD-TYPE" 
      TCGA-IB-8126       TCGA-IB-8127       TCGA-IB-A5SS       TCGA-IB-A6UG 
"SEPT10 WILD-TYPE" "SEPT10 WILD-TYPE" "SEPT10 WILD-TYPE" "SEPT10 WILD-TYPE" 
      TCGA-LB-A7SX       TCGA-OE-A75W 
"SEPT10 WILD-TYPE" "SEPT10 WILD-TYPE" 
                  vv
clus               R0 R1 RX
  SEPT10 MUTATED    3  3  0
  SEPT10 WILD-TYPE 39 21  2
D206V11, multiclass
    clus
vv   SEPT10 MUTATED SEPT10 WILD-TYPE
  R0              3               39
  R1              3               21
  RX              0                2
D206V12, continuous

Clustering(207) Variable = BRD9 MUTATION ANALYSIS
D207V1, survival
                sevent
clus2             0  1
  BRD9 MUTATED    3  4
  BRD9 WILD-TYPE 37 25
  BRD9 MUTATED BRD9 WILD-TYPE 
             7             62 
  BRD9 MUTATED BRD9 WILD-TYPE 
             4             25 
$`BRD9 MUTATED`
TCGA-F2-6880 TCGA-F2-A44G TCGA-HZ-A49G TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7888 
        9.70         5.03         0.76         4.77        21.90        43.79 
TCGA-IB-7891 
       16.04 

$`BRD9 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44H TCGA-FB-A4P5 TCGA-FB-A4P6 
       10.98        11.84         7.10        19.27         0.13        11.93 
TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR TCGA-FZ-5920 TCGA-FZ-5922 
       12.66         2.47         0.03         5.46         2.01        36.20 
TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7289 TCGA-HZ-7918 
       20.81        12.89         7.66        13.02         7.89         0.92 
TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 
        0.66         0.13         0.26        12.13        11.87         0.26 
TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 
        0.62         0.79         0.69         3.95         0.92         0.53 
TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 
        0.16         2.99         0.95         6.38         1.51        11.41 
TCGA-IB-7645 TCGA-IB-7649 TCGA-IB-7651 TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7886 
       49.38        15.35        19.82        15.65        27.98         4.04 
TCGA-IB-7887 TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-8126 
        3.62        15.81        19.66         3.85        15.98         0.56 
TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST 
       17.16        10.82         9.86         7.20        15.12         0.26 
TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 
        1.35         4.18         3.62         8.12        13.68        16.80 
TCGA-US-A77E TCGA-US-A77J 
       14.14        18.67 

  BRD9 MUTATED BRD9 WILD-TYPE 
          0.76           0.03 
  BRD9 MUTATED BRD9 WILD-TYPE 
         43.79          49.38 
  BRD9 MUTATED BRD9 WILD-TYPE 
          9.70           7.43 
[1] "0.8 - 43.8 (9.7)" "0.0 - 49.4 (7.4)"
    TCGA-F2-6879     TCGA-F2-6880     TCGA-F2-7273     TCGA-F2-7276 
"BRD9 WILD-TYPE"   "BRD9 MUTATED" "BRD9 WILD-TYPE" "BRD9 WILD-TYPE" 
    TCGA-F2-A44G     TCGA-F2-A44H     TCGA-FB-A4P5     TCGA-FB-A4P6 
  "BRD9 MUTATED" "BRD9 WILD-TYPE" "BRD9 WILD-TYPE" "BRD9 WILD-TYPE" 
    TCGA-FB-A545     TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-FB-A7DR 
"BRD9 WILD-TYPE" "BRD9 WILD-TYPE" "BRD9 WILD-TYPE" "BRD9 WILD-TYPE" 
    TCGA-FZ-5920     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-H6-8124 
"BRD9 WILD-TYPE" "BRD9 WILD-TYPE" "BRD9 WILD-TYPE" "BRD9 WILD-TYPE" 
    TCGA-H6-A45N     TCGA-H8-A6C1     TCGA-HZ-7289     TCGA-HZ-7918 
"BRD9 WILD-TYPE" "BRD9 WILD-TYPE" "BRD9 WILD-TYPE" "BRD9 WILD-TYPE" 
    TCGA-HZ-7919     TCGA-HZ-7922     TCGA-HZ-7923     TCGA-HZ-7924 
"BRD9 WILD-TYPE" "BRD9 WILD-TYPE" "BRD9 WILD-TYPE" "BRD9 WILD-TYPE" 
    TCGA-HZ-7925     TCGA-HZ-7926     TCGA-HZ-8001     TCGA-HZ-8002 
"BRD9 WILD-TYPE" "BRD9 WILD-TYPE" "BRD9 WILD-TYPE" "BRD9 WILD-TYPE" 
    TCGA-HZ-8003     TCGA-HZ-8005     TCGA-HZ-8315     TCGA-HZ-8317 
"BRD9 WILD-TYPE" "BRD9 WILD-TYPE" "BRD9 WILD-TYPE" "BRD9 WILD-TYPE" 
    TCGA-HZ-8636     TCGA-HZ-8638     TCGA-HZ-A49G     TCGA-HZ-A49H 
"BRD9 WILD-TYPE" "BRD9 WILD-TYPE"   "BRD9 MUTATED" "BRD9 WILD-TYPE" 
    TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-IB-7644     TCGA-IB-7645 
"BRD9 WILD-TYPE" "BRD9 WILD-TYPE" "BRD9 WILD-TYPE" "BRD9 WILD-TYPE" 
    TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7651 
  "BRD9 MUTATED"   "BRD9 MUTATED" "BRD9 WILD-TYPE" "BRD9 WILD-TYPE" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887 
"BRD9 WILD-TYPE" "BRD9 WILD-TYPE" "BRD9 WILD-TYPE" "BRD9 WILD-TYPE" 
    TCGA-IB-7888     TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891 
  "BRD9 MUTATED" "BRD9 WILD-TYPE" "BRD9 WILD-TYPE"   "BRD9 MUTATED" 
    TCGA-IB-7893     TCGA-IB-7897     TCGA-IB-8126     TCGA-IB-8127 
"BRD9 WILD-TYPE" "BRD9 WILD-TYPE" "BRD9 WILD-TYPE" "BRD9 WILD-TYPE" 
    TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS 
"BRD9 WILD-TYPE" "BRD9 WILD-TYPE" "BRD9 WILD-TYPE" "BRD9 WILD-TYPE" 
    TCGA-IB-A5ST     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
"BRD9 WILD-TYPE" "BRD9 WILD-TYPE" "BRD9 WILD-TYPE" "BRD9 WILD-TYPE" 
    TCGA-PZ-A5RE     TCGA-Q3-A5QY     TCGA-US-A779     TCGA-US-A77E 
"BRD9 WILD-TYPE" "BRD9 WILD-TYPE" "BRD9 WILD-TYPE" "BRD9 WILD-TYPE" 
    TCGA-US-A77J 
"BRD9 WILD-TYPE" 
    TCGA-F2-6879     TCGA-F2-6880     TCGA-F2-7273     TCGA-F2-7276 
"BRD9 WILD-TYPE"   "BRD9 MUTATED" "BRD9 WILD-TYPE" "BRD9 WILD-TYPE" 
    TCGA-F2-A44G     TCGA-F2-A44H     TCGA-FB-A4P5     TCGA-FB-A4P6 
  "BRD9 MUTATED" "BRD9 WILD-TYPE" "BRD9 WILD-TYPE" "BRD9 WILD-TYPE" 
    TCGA-FB-A545     TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-FB-A7DR 
"BRD9 WILD-TYPE" "BRD9 WILD-TYPE" "BRD9 WILD-TYPE" "BRD9 WILD-TYPE" 
    TCGA-FZ-5920     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-H6-8124 
"BRD9 WILD-TYPE" "BRD9 WILD-TYPE" "BRD9 WILD-TYPE" "BRD9 WILD-TYPE" 
    TCGA-H6-A45N     TCGA-H8-A6C1     TCGA-HZ-7289     TCGA-HZ-7918 
"BRD9 WILD-TYPE" "BRD9 WILD-TYPE" "BRD9 WILD-TYPE" "BRD9 WILD-TYPE" 
    TCGA-HZ-7919     TCGA-HZ-7922     TCGA-HZ-7923     TCGA-HZ-7924 
"BRD9 WILD-TYPE" "BRD9 WILD-TYPE" "BRD9 WILD-TYPE" "BRD9 WILD-TYPE" 
    TCGA-HZ-7925     TCGA-HZ-7926     TCGA-HZ-8001     TCGA-HZ-8002 
"BRD9 WILD-TYPE" "BRD9 WILD-TYPE" "BRD9 WILD-TYPE" "BRD9 WILD-TYPE" 
    TCGA-HZ-8003     TCGA-HZ-8005     TCGA-HZ-8315     TCGA-HZ-8317 
"BRD9 WILD-TYPE" "BRD9 WILD-TYPE" "BRD9 WILD-TYPE" "BRD9 WILD-TYPE" 
    TCGA-HZ-8636     TCGA-HZ-8638     TCGA-HZ-A49G     TCGA-HZ-A49H 
"BRD9 WILD-TYPE" "BRD9 WILD-TYPE"   "BRD9 MUTATED" "BRD9 WILD-TYPE" 
    TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-IB-7644     TCGA-IB-7645 
"BRD9 WILD-TYPE" "BRD9 WILD-TYPE" "BRD9 WILD-TYPE" "BRD9 WILD-TYPE" 
    TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7651 
  "BRD9 MUTATED"   "BRD9 MUTATED" "BRD9 WILD-TYPE" "BRD9 WILD-TYPE" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887 
"BRD9 WILD-TYPE" "BRD9 WILD-TYPE" "BRD9 WILD-TYPE" "BRD9 WILD-TYPE" 
    TCGA-IB-7888     TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891 
  "BRD9 MUTATED" "BRD9 WILD-TYPE" "BRD9 WILD-TYPE"   "BRD9 MUTATED" 
    TCGA-IB-7893     TCGA-IB-7897     TCGA-IB-8126     TCGA-IB-8127 
"BRD9 WILD-TYPE" "BRD9 WILD-TYPE" "BRD9 WILD-TYPE" "BRD9 WILD-TYPE" 
    TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS 
"BRD9 WILD-TYPE" "BRD9 WILD-TYPE" "BRD9 WILD-TYPE" "BRD9 WILD-TYPE" 
    TCGA-IB-A5ST     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
"BRD9 WILD-TYPE" "BRD9 WILD-TYPE" "BRD9 WILD-TYPE" "BRD9 WILD-TYPE" 
    TCGA-PZ-A5RE     TCGA-Q3-A5QY     TCGA-US-A779     TCGA-US-A77E 
"BRD9 WILD-TYPE" "BRD9 WILD-TYPE" "BRD9 WILD-TYPE" "BRD9 WILD-TYPE" 
    TCGA-US-A77J 
"BRD9 WILD-TYPE" 
    TCGA-F2-6879     TCGA-F2-6880     TCGA-F2-7273     TCGA-F2-7276 
"BRD9 WILD-TYPE"   "BRD9 MUTATED" "BRD9 WILD-TYPE" "BRD9 WILD-TYPE" 
    TCGA-F2-A44G     TCGA-F2-A44H     TCGA-FB-A4P5     TCGA-FB-A4P6 
  "BRD9 MUTATED" "BRD9 WILD-TYPE" "BRD9 WILD-TYPE" "BRD9 WILD-TYPE" 
    TCGA-FB-A545     TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-FB-A7DR 
"BRD9 WILD-TYPE" "BRD9 WILD-TYPE" "BRD9 WILD-TYPE" "BRD9 WILD-TYPE" 
    TCGA-FZ-5920     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-H6-8124 
"BRD9 WILD-TYPE" "BRD9 WILD-TYPE" "BRD9 WILD-TYPE" "BRD9 WILD-TYPE" 
    TCGA-H6-A45N     TCGA-H8-A6C1     TCGA-HZ-7289     TCGA-HZ-7918 
"BRD9 WILD-TYPE" "BRD9 WILD-TYPE" "BRD9 WILD-TYPE" "BRD9 WILD-TYPE" 
    TCGA-HZ-7919     TCGA-HZ-7922     TCGA-HZ-7923     TCGA-HZ-7924 
"BRD9 WILD-TYPE" "BRD9 WILD-TYPE" "BRD9 WILD-TYPE" "BRD9 WILD-TYPE" 
    TCGA-HZ-7925     TCGA-HZ-7926     TCGA-HZ-8001     TCGA-HZ-8002 
"BRD9 WILD-TYPE" "BRD9 WILD-TYPE" "BRD9 WILD-TYPE" "BRD9 WILD-TYPE" 
    TCGA-HZ-8003     TCGA-HZ-8005     TCGA-HZ-8315     TCGA-HZ-8317 
"BRD9 WILD-TYPE" "BRD9 WILD-TYPE" "BRD9 WILD-TYPE" "BRD9 WILD-TYPE" 
    TCGA-HZ-8636     TCGA-HZ-8638     TCGA-HZ-A49G     TCGA-HZ-A49H 
"BRD9 WILD-TYPE" "BRD9 WILD-TYPE"   "BRD9 MUTATED" "BRD9 WILD-TYPE" 
    TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-IB-7644     TCGA-IB-7645 
"BRD9 WILD-TYPE" "BRD9 WILD-TYPE" "BRD9 WILD-TYPE" "BRD9 WILD-TYPE" 
    TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7651 
  "BRD9 MUTATED"   "BRD9 MUTATED" "BRD9 WILD-TYPE" "BRD9 WILD-TYPE" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887 
"BRD9 WILD-TYPE" "BRD9 WILD-TYPE" "BRD9 WILD-TYPE" "BRD9 WILD-TYPE" 
    TCGA-IB-7888     TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891 
  "BRD9 MUTATED" "BRD9 WILD-TYPE" "BRD9 WILD-TYPE"   "BRD9 MUTATED" 
    TCGA-IB-7893     TCGA-IB-7897     TCGA-IB-8126     TCGA-IB-8127 
"BRD9 WILD-TYPE" "BRD9 WILD-TYPE" "BRD9 WILD-TYPE" "BRD9 WILD-TYPE" 
    TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS 
"BRD9 WILD-TYPE" "BRD9 WILD-TYPE" "BRD9 WILD-TYPE" "BRD9 WILD-TYPE" 
    TCGA-IB-A5ST     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
"BRD9 WILD-TYPE" "BRD9 WILD-TYPE" "BRD9 WILD-TYPE" "BRD9 WILD-TYPE" 
    TCGA-PZ-A5RE     TCGA-Q3-A5QY     TCGA-US-A779     TCGA-US-A77E 
"BRD9 WILD-TYPE" "BRD9 WILD-TYPE" "BRD9 WILD-TYPE" "BRD9 WILD-TYPE" 
    TCGA-US-A77J 
"BRD9 WILD-TYPE" 
[1] "hr=" "1.4"
D207V2, continuous
                vv
clus             STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  BRD9 MUTATED          0        0         1         6         0        0
  BRD9 WILD-TYPE        1        4        10        45         2        3
D207V3, multiclass
                vv
clus             T1+T2 T3+T4
  BRD9 MUTATED       1     6
  BRD9 WILD-TYPE     5    60
D207V4, multiclass
       clus
vv      BRD9 MUTATED BRD9 WILD-TYPE
  T1+T2            1              5
  T3+T4            6             60
D207V5, binary
                cls
clus              0  1
  BRD9 MUTATED    1  6
  BRD9 WILD-TYPE 16 48
[1] "tbl2"
                cls
clus             [,1] [,2]
  BRD9 MUTATED      1    6
  BRD9 WILD-TYPE   16   48
   clus
vv  BRD9 MUTATED BRD9 WILD-TYPE
  0            1             16
  1            6             48
                vv
clus             M0 M1 MX
  BRD9 MUTATED    6  0  1
  BRD9 WILD-TYPE 33  3 29
D207V6, multiclass
    clus
vv   BRD9 MUTATED BRD9 WILD-TYPE
  M0            6             33
  M1            0              3
  MX            1             29
D207V7, binary
                cls
clus              0  1
  BRD9 MUTATED    4  3
  BRD9 WILD-TYPE 32 33
[1] "tbl2"
                cls
clus             [,1] [,2]
  BRD9 MUTATED      4    3
  BRD9 WILD-TYPE   32   33
        clus
vv       BRD9 MUTATED BRD9 WILD-TYPE
  FEMALE            4             32
  MALE              3             33
                vv
clus             PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  BRD9 MUTATED                                     7
  BRD9 WILD-TYPE                                  58
                vv
clus             PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  BRD9 MUTATED                                       0
  BRD9 WILD-TYPE                                     4
                vv
clus             PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  BRD9 MUTATED                                                  0
  BRD9 WILD-TYPE                                                2
D207V8, multiclass
                                                  clus
vv                                                 BRD9 MUTATED BRD9 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                         7             58
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                       0              4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA            0              2
D207V9, continuous
[1] "Remove cluster labels:" "BRD9 MUTATED"          
clus
  BRD9 MUTATED BRD9 WILD-TYPE 
             2             20 
    TCGA-FB-A4P5     TCGA-FB-A4P6     TCGA-FB-A5VM     TCGA-FB-A78T 
"BRD9 WILD-TYPE" "BRD9 WILD-TYPE" "BRD9 WILD-TYPE" "BRD9 WILD-TYPE" 
    TCGA-FB-A7DR     TCGA-H6-8124     TCGA-H6-A45N     TCGA-H8-A6C1 
"BRD9 WILD-TYPE" "BRD9 WILD-TYPE" "BRD9 WILD-TYPE" "BRD9 WILD-TYPE" 
    TCGA-IB-7644     TCGA-IB-7649     TCGA-IB-7651     TCGA-IB-7885 
"BRD9 WILD-TYPE" "BRD9 WILD-TYPE" "BRD9 WILD-TYPE" "BRD9 WILD-TYPE" 
    TCGA-IB-7886     TCGA-IB-7887     TCGA-IB-8126     TCGA-IB-8127 
"BRD9 WILD-TYPE" "BRD9 WILD-TYPE" "BRD9 WILD-TYPE" "BRD9 WILD-TYPE" 
    TCGA-IB-A5SS     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
"BRD9 WILD-TYPE" "BRD9 WILD-TYPE" "BRD9 WILD-TYPE" "BRD9 WILD-TYPE" 
D207V10, continuous
[1] "Remove cluster labels:" "BRD9 MUTATED"          
clus
  BRD9 MUTATED BRD9 WILD-TYPE 
             1             18 
    TCGA-FB-A4P5     TCGA-FB-A4P6     TCGA-FB-A5VM     TCGA-FB-A78T 
"BRD9 WILD-TYPE" "BRD9 WILD-TYPE" "BRD9 WILD-TYPE" "BRD9 WILD-TYPE" 
    TCGA-FB-A7DR     TCGA-H6-8124     TCGA-H8-A6C1     TCGA-IB-7644 
"BRD9 WILD-TYPE" "BRD9 WILD-TYPE" "BRD9 WILD-TYPE" "BRD9 WILD-TYPE" 
    TCGA-IB-7649     TCGA-IB-7651     TCGA-IB-7885     TCGA-IB-7886 
"BRD9 WILD-TYPE" "BRD9 WILD-TYPE" "BRD9 WILD-TYPE" "BRD9 WILD-TYPE" 
    TCGA-IB-8126     TCGA-IB-8127     TCGA-IB-A5SS     TCGA-IB-A6UG 
"BRD9 WILD-TYPE" "BRD9 WILD-TYPE" "BRD9 WILD-TYPE" "BRD9 WILD-TYPE" 
    TCGA-LB-A7SX     TCGA-OE-A75W 
"BRD9 WILD-TYPE" "BRD9 WILD-TYPE" 
                vv
clus             R0 R1 RX
  BRD9 MUTATED    3  4  0
  BRD9 WILD-TYPE 39 20  2
D207V11, multiclass
    clus
vv   BRD9 MUTATED BRD9 WILD-TYPE
  R0            3             39
  R1            4             20
  RX            0              2
D207V12, continuous

Clustering(208) Variable = HMGB3 MUTATION ANALYSIS
D208V1, survival
                 sevent
clus2              0  1
  HMGB3 MUTATED    1  2
  HMGB3 WILD-TYPE 39 27
  HMGB3 MUTATED HMGB3 WILD-TYPE 
              3              66 
  HMGB3 MUTATED HMGB3 WILD-TYPE 
              2              27 
$`HMGB3 MUTATED`
TCGA-HZ-8317 TCGA-IB-7645 TCGA-IB-7897 
        0.53        49.38        15.98 

$`HMGB3 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P5 TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR 
        0.13        11.93        12.66         2.47         0.03         5.46 
TCGA-FZ-5920 TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 
        2.01        36.20        20.81        12.89         7.66        13.02 
TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 
        7.89         0.92         0.66         0.13         0.26        12.13 
TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 
       11.87         0.26         0.62         0.79         0.69         3.95 
TCGA-HZ-8315 TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH 
        0.92         0.16         2.99         0.76         0.95         6.38 
TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7651 
        1.51        11.41         4.77        21.90        15.35        19.82 
TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 
       15.65        27.98         4.04         3.62        43.79        15.81 
TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO 
       19.66        16.04         3.85         0.56        17.16        10.82 
TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX 
        9.86         7.20        15.12         0.26         1.35         4.18 
TCGA-OE-A75W TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
        3.62         8.12        13.68        16.80        14.14        18.67 

  HMGB3 MUTATED HMGB3 WILD-TYPE 
           0.53            0.03 
  HMGB3 MUTATED HMGB3 WILD-TYPE 
          49.38           43.79 
  HMGB3 MUTATED HMGB3 WILD-TYPE 
          15.98            7.43 
[1] "0.5 - 49.4 (16.0)" "0.0 - 43.8 (7.4)" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"HMGB3 WILD-TYPE" "HMGB3 WILD-TYPE" "HMGB3 WILD-TYPE" "HMGB3 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"HMGB3 WILD-TYPE" "HMGB3 WILD-TYPE" "HMGB3 WILD-TYPE" "HMGB3 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"HMGB3 WILD-TYPE" "HMGB3 WILD-TYPE" "HMGB3 WILD-TYPE" "HMGB3 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"HMGB3 WILD-TYPE" "HMGB3 WILD-TYPE" "HMGB3 WILD-TYPE" "HMGB3 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"HMGB3 WILD-TYPE" "HMGB3 WILD-TYPE" "HMGB3 WILD-TYPE" "HMGB3 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"HMGB3 WILD-TYPE" "HMGB3 WILD-TYPE" "HMGB3 WILD-TYPE" "HMGB3 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"HMGB3 WILD-TYPE" "HMGB3 WILD-TYPE" "HMGB3 WILD-TYPE" "HMGB3 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"HMGB3 WILD-TYPE" "HMGB3 WILD-TYPE" "HMGB3 WILD-TYPE"   "HMGB3 MUTATED" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"HMGB3 WILD-TYPE" "HMGB3 WILD-TYPE" "HMGB3 WILD-TYPE" "HMGB3 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"HMGB3 WILD-TYPE" "HMGB3 WILD-TYPE" "HMGB3 WILD-TYPE"   "HMGB3 MUTATED" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"HMGB3 WILD-TYPE" "HMGB3 WILD-TYPE" "HMGB3 WILD-TYPE" "HMGB3 WILD-TYPE" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"HMGB3 WILD-TYPE" "HMGB3 WILD-TYPE" "HMGB3 WILD-TYPE" "HMGB3 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"HMGB3 WILD-TYPE" "HMGB3 WILD-TYPE" "HMGB3 WILD-TYPE" "HMGB3 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"HMGB3 WILD-TYPE"   "HMGB3 MUTATED" "HMGB3 WILD-TYPE" "HMGB3 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"HMGB3 WILD-TYPE" "HMGB3 WILD-TYPE" "HMGB3 WILD-TYPE" "HMGB3 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"HMGB3 WILD-TYPE" "HMGB3 WILD-TYPE" "HMGB3 WILD-TYPE" "HMGB3 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"HMGB3 WILD-TYPE" "HMGB3 WILD-TYPE" "HMGB3 WILD-TYPE" "HMGB3 WILD-TYPE" 
     TCGA-US-A77J 
"HMGB3 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"HMGB3 WILD-TYPE" "HMGB3 WILD-TYPE" "HMGB3 WILD-TYPE" "HMGB3 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"HMGB3 WILD-TYPE" "HMGB3 WILD-TYPE" "HMGB3 WILD-TYPE" "HMGB3 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"HMGB3 WILD-TYPE" "HMGB3 WILD-TYPE" "HMGB3 WILD-TYPE" "HMGB3 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"HMGB3 WILD-TYPE" "HMGB3 WILD-TYPE" "HMGB3 WILD-TYPE" "HMGB3 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"HMGB3 WILD-TYPE" "HMGB3 WILD-TYPE" "HMGB3 WILD-TYPE" "HMGB3 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"HMGB3 WILD-TYPE" "HMGB3 WILD-TYPE" "HMGB3 WILD-TYPE" "HMGB3 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"HMGB3 WILD-TYPE" "HMGB3 WILD-TYPE" "HMGB3 WILD-TYPE" "HMGB3 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"HMGB3 WILD-TYPE" "HMGB3 WILD-TYPE" "HMGB3 WILD-TYPE"   "HMGB3 MUTATED" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"HMGB3 WILD-TYPE" "HMGB3 WILD-TYPE" "HMGB3 WILD-TYPE" "HMGB3 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"HMGB3 WILD-TYPE" "HMGB3 WILD-TYPE" "HMGB3 WILD-TYPE"   "HMGB3 MUTATED" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"HMGB3 WILD-TYPE" "HMGB3 WILD-TYPE" "HMGB3 WILD-TYPE" "HMGB3 WILD-TYPE" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"HMGB3 WILD-TYPE" "HMGB3 WILD-TYPE" "HMGB3 WILD-TYPE" "HMGB3 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"HMGB3 WILD-TYPE" "HMGB3 WILD-TYPE" "HMGB3 WILD-TYPE" "HMGB3 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"HMGB3 WILD-TYPE"   "HMGB3 MUTATED" "HMGB3 WILD-TYPE" "HMGB3 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"HMGB3 WILD-TYPE" "HMGB3 WILD-TYPE" "HMGB3 WILD-TYPE" "HMGB3 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"HMGB3 WILD-TYPE" "HMGB3 WILD-TYPE" "HMGB3 WILD-TYPE" "HMGB3 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"HMGB3 WILD-TYPE" "HMGB3 WILD-TYPE" "HMGB3 WILD-TYPE" "HMGB3 WILD-TYPE" 
     TCGA-US-A77J 
"HMGB3 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"HMGB3 WILD-TYPE" "HMGB3 WILD-TYPE" "HMGB3 WILD-TYPE" "HMGB3 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"HMGB3 WILD-TYPE" "HMGB3 WILD-TYPE" "HMGB3 WILD-TYPE" "HMGB3 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"HMGB3 WILD-TYPE" "HMGB3 WILD-TYPE" "HMGB3 WILD-TYPE" "HMGB3 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"HMGB3 WILD-TYPE" "HMGB3 WILD-TYPE" "HMGB3 WILD-TYPE" "HMGB3 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"HMGB3 WILD-TYPE" "HMGB3 WILD-TYPE" "HMGB3 WILD-TYPE" "HMGB3 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"HMGB3 WILD-TYPE" "HMGB3 WILD-TYPE" "HMGB3 WILD-TYPE" "HMGB3 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"HMGB3 WILD-TYPE" "HMGB3 WILD-TYPE" "HMGB3 WILD-TYPE" "HMGB3 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"HMGB3 WILD-TYPE" "HMGB3 WILD-TYPE" "HMGB3 WILD-TYPE"   "HMGB3 MUTATED" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"HMGB3 WILD-TYPE" "HMGB3 WILD-TYPE" "HMGB3 WILD-TYPE" "HMGB3 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"HMGB3 WILD-TYPE" "HMGB3 WILD-TYPE" "HMGB3 WILD-TYPE"   "HMGB3 MUTATED" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"HMGB3 WILD-TYPE" "HMGB3 WILD-TYPE" "HMGB3 WILD-TYPE" "HMGB3 WILD-TYPE" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"HMGB3 WILD-TYPE" "HMGB3 WILD-TYPE" "HMGB3 WILD-TYPE" "HMGB3 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"HMGB3 WILD-TYPE" "HMGB3 WILD-TYPE" "HMGB3 WILD-TYPE" "HMGB3 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"HMGB3 WILD-TYPE"   "HMGB3 MUTATED" "HMGB3 WILD-TYPE" "HMGB3 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"HMGB3 WILD-TYPE" "HMGB3 WILD-TYPE" "HMGB3 WILD-TYPE" "HMGB3 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"HMGB3 WILD-TYPE" "HMGB3 WILD-TYPE" "HMGB3 WILD-TYPE" "HMGB3 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"HMGB3 WILD-TYPE" "HMGB3 WILD-TYPE" "HMGB3 WILD-TYPE" "HMGB3 WILD-TYPE" 
     TCGA-US-A77J 
"HMGB3 WILD-TYPE" 
[1] "hr=" "3.6"
D208V2, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  HMGB3 MUTATED          0        0         0         3         0        0
  HMGB3 WILD-TYPE        1        4        11        48         2        3
D208V3, multiclass
                 vv
clus              T1+T2 T3+T4
  HMGB3 MUTATED       0     3
  HMGB3 WILD-TYPE     6    63
D208V4, multiclass
       clus
vv      HMGB3 MUTATED HMGB3 WILD-TYPE
  T1+T2             0               6
  T3+T4             3              63
D208V5, binary
                 cls
clus               0  1
  HMGB3 MUTATED    0  3
  HMGB3 WILD-TYPE 17 51
[1] "tbl2"
                 cls
clus              [,1] [,2]
  HMGB3 MUTATED      0    3
  HMGB3 WILD-TYPE   17   51
   clus
vv  HMGB3 MUTATED HMGB3 WILD-TYPE
  0             0              17
  1             3              51
                 vv
clus              M0 M1 MX
  HMGB3 MUTATED    2  0  1
  HMGB3 WILD-TYPE 37  3 29
D208V6, multiclass
    clus
vv   HMGB3 MUTATED HMGB3 WILD-TYPE
  M0             2              37
  M1             0               3
  MX             1              29
D208V7, binary
                 cls
clus               0  1
  HMGB3 MUTATED    3  0
  HMGB3 WILD-TYPE 33 36
[1] "tbl2"
                 cls
clus              [,1] [,2]
  HMGB3 MUTATED      3    0
  HMGB3 WILD-TYPE   33   36
        clus
vv       HMGB3 MUTATED HMGB3 WILD-TYPE
  FEMALE             3              33
  MALE               0              36
                 vv
clus              PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  HMGB3 MUTATED                                     3
  HMGB3 WILD-TYPE                                  62
                 vv
clus              PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  HMGB3 MUTATED                                       0
  HMGB3 WILD-TYPE                                     4
                 vv
clus              PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  HMGB3 MUTATED                                                  0
  HMGB3 WILD-TYPE                                                2
D208V8, multiclass
                                                  clus
vv                                                 HMGB3 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                          3
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                        0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA             0
                                                  clus
vv                                                 HMGB3 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                           62
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                          4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA               2
D208V9, continuous
D208V10, continuous
                 vv
clus              R0 R1 RX
  HMGB3 MUTATED    2  1  0
  HMGB3 WILD-TYPE 40 23  2
D208V11, multiclass
    clus
vv   HMGB3 MUTATED HMGB3 WILD-TYPE
  R0             2              40
  R1             1              23
  RX             0               2
D208V12, continuous

Clustering(209) Variable = PAMR1 MUTATION ANALYSIS
D209V1, survival
                 sevent
clus2              0  1
  PAMR1 MUTATED    5  2
  PAMR1 WILD-TYPE 35 27
  PAMR1 MUTATED PAMR1 WILD-TYPE 
              7              62 
  PAMR1 MUTATED PAMR1 WILD-TYPE 
              2              27 
$`PAMR1 MUTATED`
TCGA-F2-6880 TCGA-HZ-8001 TCGA-HZ-8003 TCGA-HZ-8315 TCGA-HZ-8317 TCGA-IB-7651 
        9.70         0.62         0.69         0.92         0.53        19.82 
TCGA-IB-7890 
       19.66 

$`PAMR1 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H TCGA-FB-A4P5 
       10.98        11.84         7.10         5.03        19.27         0.13 
TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR TCGA-FZ-5920 
       11.93        12.66         2.47         0.03         5.46         2.01 
TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7289 
       36.20        20.81        12.89         7.66        13.02         7.89 
TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 
        0.92         0.66         0.13         0.26        12.13        11.87 
TCGA-HZ-7926 TCGA-HZ-8002 TCGA-HZ-8005 TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G 
        0.26         0.79         3.95         0.16         2.99         0.76 
TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7646 
        0.95         6.38         1.51        11.41        49.38         4.77 
TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 
       21.90        15.35        15.65        27.98         4.04         3.62 
TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-8126 
       43.79        15.81        16.04         3.85        15.98         0.56 
TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST 
       17.16        10.82         9.86         7.20        15.12         0.26 
TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 
        1.35         4.18         3.62         8.12        13.68        16.80 
TCGA-US-A77E TCGA-US-A77J 
       14.14        18.67 

  PAMR1 MUTATED PAMR1 WILD-TYPE 
           0.53            0.03 
  PAMR1 MUTATED PAMR1 WILD-TYPE 
          19.82           49.38 
  PAMR1 MUTATED PAMR1 WILD-TYPE 
          0.920           7.775 
[1] "0.5 - 19.8 (0.9)" "0.0 - 49.4 (7.8)"
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"PAMR1 WILD-TYPE"   "PAMR1 MUTATED" "PAMR1 WILD-TYPE" "PAMR1 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"PAMR1 WILD-TYPE" "PAMR1 WILD-TYPE" "PAMR1 WILD-TYPE" "PAMR1 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"PAMR1 WILD-TYPE" "PAMR1 WILD-TYPE" "PAMR1 WILD-TYPE" "PAMR1 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"PAMR1 WILD-TYPE" "PAMR1 WILD-TYPE" "PAMR1 WILD-TYPE" "PAMR1 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"PAMR1 WILD-TYPE" "PAMR1 WILD-TYPE" "PAMR1 WILD-TYPE" "PAMR1 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"PAMR1 WILD-TYPE" "PAMR1 WILD-TYPE" "PAMR1 WILD-TYPE" "PAMR1 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"PAMR1 WILD-TYPE" "PAMR1 WILD-TYPE"   "PAMR1 MUTATED" "PAMR1 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
  "PAMR1 MUTATED" "PAMR1 WILD-TYPE"   "PAMR1 MUTATED"   "PAMR1 MUTATED" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"PAMR1 WILD-TYPE" "PAMR1 WILD-TYPE" "PAMR1 WILD-TYPE" "PAMR1 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"PAMR1 WILD-TYPE" "PAMR1 WILD-TYPE" "PAMR1 WILD-TYPE" "PAMR1 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"PAMR1 WILD-TYPE" "PAMR1 WILD-TYPE" "PAMR1 WILD-TYPE"   "PAMR1 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"PAMR1 WILD-TYPE" "PAMR1 WILD-TYPE" "PAMR1 WILD-TYPE" "PAMR1 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"PAMR1 WILD-TYPE" "PAMR1 WILD-TYPE"   "PAMR1 MUTATED" "PAMR1 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"PAMR1 WILD-TYPE" "PAMR1 WILD-TYPE" "PAMR1 WILD-TYPE" "PAMR1 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"PAMR1 WILD-TYPE" "PAMR1 WILD-TYPE" "PAMR1 WILD-TYPE" "PAMR1 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"PAMR1 WILD-TYPE" "PAMR1 WILD-TYPE" "PAMR1 WILD-TYPE" "PAMR1 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"PAMR1 WILD-TYPE" "PAMR1 WILD-TYPE" "PAMR1 WILD-TYPE" "PAMR1 WILD-TYPE" 
     TCGA-US-A77J 
"PAMR1 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"PAMR1 WILD-TYPE"   "PAMR1 MUTATED" "PAMR1 WILD-TYPE" "PAMR1 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"PAMR1 WILD-TYPE" "PAMR1 WILD-TYPE" "PAMR1 WILD-TYPE" "PAMR1 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"PAMR1 WILD-TYPE" "PAMR1 WILD-TYPE" "PAMR1 WILD-TYPE" "PAMR1 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"PAMR1 WILD-TYPE" "PAMR1 WILD-TYPE" "PAMR1 WILD-TYPE" "PAMR1 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"PAMR1 WILD-TYPE" "PAMR1 WILD-TYPE" "PAMR1 WILD-TYPE" "PAMR1 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"PAMR1 WILD-TYPE" "PAMR1 WILD-TYPE" "PAMR1 WILD-TYPE" "PAMR1 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"PAMR1 WILD-TYPE" "PAMR1 WILD-TYPE"   "PAMR1 MUTATED" "PAMR1 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
  "PAMR1 MUTATED" "PAMR1 WILD-TYPE"   "PAMR1 MUTATED"   "PAMR1 MUTATED" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"PAMR1 WILD-TYPE" "PAMR1 WILD-TYPE" "PAMR1 WILD-TYPE" "PAMR1 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"PAMR1 WILD-TYPE" "PAMR1 WILD-TYPE" "PAMR1 WILD-TYPE" "PAMR1 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"PAMR1 WILD-TYPE" "PAMR1 WILD-TYPE" "PAMR1 WILD-TYPE"   "PAMR1 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"PAMR1 WILD-TYPE" "PAMR1 WILD-TYPE" "PAMR1 WILD-TYPE" "PAMR1 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"PAMR1 WILD-TYPE" "PAMR1 WILD-TYPE"   "PAMR1 MUTATED" "PAMR1 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"PAMR1 WILD-TYPE" "PAMR1 WILD-TYPE" "PAMR1 WILD-TYPE" "PAMR1 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"PAMR1 WILD-TYPE" "PAMR1 WILD-TYPE" "PAMR1 WILD-TYPE" "PAMR1 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"PAMR1 WILD-TYPE" "PAMR1 WILD-TYPE" "PAMR1 WILD-TYPE" "PAMR1 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"PAMR1 WILD-TYPE" "PAMR1 WILD-TYPE" "PAMR1 WILD-TYPE" "PAMR1 WILD-TYPE" 
     TCGA-US-A77J 
"PAMR1 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"PAMR1 WILD-TYPE"   "PAMR1 MUTATED" "PAMR1 WILD-TYPE" "PAMR1 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"PAMR1 WILD-TYPE" "PAMR1 WILD-TYPE" "PAMR1 WILD-TYPE" "PAMR1 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"PAMR1 WILD-TYPE" "PAMR1 WILD-TYPE" "PAMR1 WILD-TYPE" "PAMR1 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"PAMR1 WILD-TYPE" "PAMR1 WILD-TYPE" "PAMR1 WILD-TYPE" "PAMR1 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"PAMR1 WILD-TYPE" "PAMR1 WILD-TYPE" "PAMR1 WILD-TYPE" "PAMR1 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"PAMR1 WILD-TYPE" "PAMR1 WILD-TYPE" "PAMR1 WILD-TYPE" "PAMR1 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"PAMR1 WILD-TYPE" "PAMR1 WILD-TYPE"   "PAMR1 MUTATED" "PAMR1 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
  "PAMR1 MUTATED" "PAMR1 WILD-TYPE"   "PAMR1 MUTATED"   "PAMR1 MUTATED" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"PAMR1 WILD-TYPE" "PAMR1 WILD-TYPE" "PAMR1 WILD-TYPE" "PAMR1 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"PAMR1 WILD-TYPE" "PAMR1 WILD-TYPE" "PAMR1 WILD-TYPE" "PAMR1 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"PAMR1 WILD-TYPE" "PAMR1 WILD-TYPE" "PAMR1 WILD-TYPE"   "PAMR1 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"PAMR1 WILD-TYPE" "PAMR1 WILD-TYPE" "PAMR1 WILD-TYPE" "PAMR1 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"PAMR1 WILD-TYPE" "PAMR1 WILD-TYPE"   "PAMR1 MUTATED" "PAMR1 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"PAMR1 WILD-TYPE" "PAMR1 WILD-TYPE" "PAMR1 WILD-TYPE" "PAMR1 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"PAMR1 WILD-TYPE" "PAMR1 WILD-TYPE" "PAMR1 WILD-TYPE" "PAMR1 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"PAMR1 WILD-TYPE" "PAMR1 WILD-TYPE" "PAMR1 WILD-TYPE" "PAMR1 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"PAMR1 WILD-TYPE" "PAMR1 WILD-TYPE" "PAMR1 WILD-TYPE" "PAMR1 WILD-TYPE" 
     TCGA-US-A77J 
"PAMR1 WILD-TYPE" 
[1] "hr=" "1.3"
D209V2, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  PAMR1 MUTATED          0        1         1         4         1        0
  PAMR1 WILD-TYPE        1        3        10        47         1        3
D209V3, multiclass
                 vv
clus              T1+T2 T3+T4
  PAMR1 MUTATED       1     6
  PAMR1 WILD-TYPE     5    60
D209V4, multiclass
       clus
vv      PAMR1 MUTATED PAMR1 WILD-TYPE
  T1+T2             1               5
  T3+T4             6              60
D209V5, binary
                 cls
clus               0  1
  PAMR1 MUTATED    3  4
  PAMR1 WILD-TYPE 14 50
[1] "tbl2"
                 cls
clus              [,1] [,2]
  PAMR1 MUTATED      3    4
  PAMR1 WILD-TYPE   14   50
   clus
vv  PAMR1 MUTATED PAMR1 WILD-TYPE
  0             3              14
  1             4              50
                 vv
clus              M0 M1 MX
  PAMR1 MUTATED    3  0  4
  PAMR1 WILD-TYPE 36  3 26
D209V6, multiclass
    clus
vv   PAMR1 MUTATED PAMR1 WILD-TYPE
  M0             3              36
  M1             0               3
  MX             4              26
D209V7, binary
                 cls
clus               0  1
  PAMR1 MUTATED    4  3
  PAMR1 WILD-TYPE 32 33
[1] "tbl2"
                 cls
clus              [,1] [,2]
  PAMR1 MUTATED      4    3
  PAMR1 WILD-TYPE   32   33
        clus
vv       PAMR1 MUTATED PAMR1 WILD-TYPE
  FEMALE             4              32
  MALE               3              33
                 vv
clus              PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  PAMR1 MUTATED                                     7
  PAMR1 WILD-TYPE                                  58
                 vv
clus              PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  PAMR1 MUTATED                                       0
  PAMR1 WILD-TYPE                                     4
                 vv
clus              PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  PAMR1 MUTATED                                                  0
  PAMR1 WILD-TYPE                                                2
D209V8, multiclass
                                                  clus
vv                                                 PAMR1 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                          7
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                        0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA             0
                                                  clus
vv                                                 PAMR1 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                           58
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                          4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA               2
D209V9, continuous
[1] "Remove cluster labels:" "PAMR1 MUTATED"         
clus
  PAMR1 MUTATED PAMR1 WILD-TYPE 
              2              20 
     TCGA-FB-A4P5      TCGA-FB-A4P6      TCGA-FB-A5VM      TCGA-FB-A78T 
"PAMR1 WILD-TYPE" "PAMR1 WILD-TYPE" "PAMR1 WILD-TYPE" "PAMR1 WILD-TYPE" 
     TCGA-FB-A7DR      TCGA-H6-8124      TCGA-H6-A45N      TCGA-H8-A6C1 
"PAMR1 WILD-TYPE" "PAMR1 WILD-TYPE" "PAMR1 WILD-TYPE" "PAMR1 WILD-TYPE" 
     TCGA-IB-7644      TCGA-IB-7649      TCGA-IB-7885      TCGA-IB-7886 
"PAMR1 WILD-TYPE" "PAMR1 WILD-TYPE" "PAMR1 WILD-TYPE" "PAMR1 WILD-TYPE" 
     TCGA-IB-7887      TCGA-IB-7891      TCGA-IB-8126      TCGA-IB-8127 
"PAMR1 WILD-TYPE" "PAMR1 WILD-TYPE" "PAMR1 WILD-TYPE" "PAMR1 WILD-TYPE" 
     TCGA-IB-A5SS      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"PAMR1 WILD-TYPE" "PAMR1 WILD-TYPE" "PAMR1 WILD-TYPE" "PAMR1 WILD-TYPE" 
D209V10, continuous
[1] "Remove cluster labels:" "PAMR1 MUTATED"         
clus
  PAMR1 MUTATED PAMR1 WILD-TYPE 
              1              18 
     TCGA-FB-A4P5      TCGA-FB-A4P6      TCGA-FB-A5VM      TCGA-FB-A78T 
"PAMR1 WILD-TYPE" "PAMR1 WILD-TYPE" "PAMR1 WILD-TYPE" "PAMR1 WILD-TYPE" 
     TCGA-FB-A7DR      TCGA-H6-8124      TCGA-H8-A6C1      TCGA-IB-7644 
"PAMR1 WILD-TYPE" "PAMR1 WILD-TYPE" "PAMR1 WILD-TYPE" "PAMR1 WILD-TYPE" 
     TCGA-IB-7649      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7891 
"PAMR1 WILD-TYPE" "PAMR1 WILD-TYPE" "PAMR1 WILD-TYPE" "PAMR1 WILD-TYPE" 
     TCGA-IB-8126      TCGA-IB-8127      TCGA-IB-A5SS      TCGA-IB-A6UG 
"PAMR1 WILD-TYPE" "PAMR1 WILD-TYPE" "PAMR1 WILD-TYPE" "PAMR1 WILD-TYPE" 
     TCGA-LB-A7SX      TCGA-OE-A75W 
"PAMR1 WILD-TYPE" "PAMR1 WILD-TYPE" 
                 vv
clus              R0 R1 RX
  PAMR1 MUTATED    5  2  0
  PAMR1 WILD-TYPE 37 22  2
D209V11, multiclass
    clus
vv   PAMR1 MUTATED PAMR1 WILD-TYPE
  R0             5              37
  R1             2              22
  RX             0               2
D209V12, continuous

Clustering(210) Variable = ZNF704 MUTATION ANALYSIS
D210V1, survival
                  sevent
clus2               0  1
  ZNF704 MUTATED    2  2
  ZNF704 WILD-TYPE 38 27
  ZNF704 MUTATED ZNF704 WILD-TYPE 
               4               65 
  ZNF704 MUTATED ZNF704 WILD-TYPE 
               2               27 
$`ZNF704 MUTATED`
TCGA-FB-A4P5 TCGA-HZ-8003 TCGA-HZ-A49G TCGA-IB-7886 
        0.13         0.69         0.76         4.04 

$`ZNF704 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR TCGA-FZ-5920 
       11.93        12.66         2.47         0.03         5.46         2.01 
TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7289 
       36.20        20.81        12.89         7.66        13.02         7.89 
TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 
        0.92         0.66         0.13         0.26        12.13        11.87 
TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 
        0.26         0.62         0.79         3.95         0.92         0.53 
TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 
        0.16         2.99         0.95         6.38         1.51        11.41 
TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7651 TCGA-IB-7652 
       49.38         4.77        21.90        15.35        19.82        15.65 
TCGA-IB-7885 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 
       27.98         3.62        43.79        15.81        19.66        16.04 
TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP 
        3.85        15.98         0.56        17.16        10.82         9.86 
TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W 
        7.20        15.12         0.26         1.35         4.18         3.62 
TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
        8.12        13.68        16.80        14.14        18.67 

  ZNF704 MUTATED ZNF704 WILD-TYPE 
            0.13             0.03 
  ZNF704 MUTATED ZNF704 WILD-TYPE 
            4.04            49.38 
  ZNF704 MUTATED ZNF704 WILD-TYPE 
           0.725            8.120 
[1] "0.1 - 4.0 (0.7)"  "0.0 - 49.4 (8.1)"
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
"ZNF704 WILD-TYPE" "ZNF704 WILD-TYPE" "ZNF704 WILD-TYPE" "ZNF704 WILD-TYPE" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"ZNF704 WILD-TYPE" "ZNF704 WILD-TYPE"   "ZNF704 MUTATED" "ZNF704 WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
"ZNF704 WILD-TYPE" "ZNF704 WILD-TYPE" "ZNF704 WILD-TYPE" "ZNF704 WILD-TYPE" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"ZNF704 WILD-TYPE" "ZNF704 WILD-TYPE" "ZNF704 WILD-TYPE" "ZNF704 WILD-TYPE" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
"ZNF704 WILD-TYPE" "ZNF704 WILD-TYPE" "ZNF704 WILD-TYPE" "ZNF704 WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
"ZNF704 WILD-TYPE" "ZNF704 WILD-TYPE" "ZNF704 WILD-TYPE" "ZNF704 WILD-TYPE" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"ZNF704 WILD-TYPE" "ZNF704 WILD-TYPE" "ZNF704 WILD-TYPE" "ZNF704 WILD-TYPE" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
  "ZNF704 MUTATED" "ZNF704 WILD-TYPE" "ZNF704 WILD-TYPE" "ZNF704 WILD-TYPE" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
"ZNF704 WILD-TYPE" "ZNF704 WILD-TYPE"   "ZNF704 MUTATED" "ZNF704 WILD-TYPE" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
"ZNF704 WILD-TYPE" "ZNF704 WILD-TYPE" "ZNF704 WILD-TYPE" "ZNF704 WILD-TYPE" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
"ZNF704 WILD-TYPE" "ZNF704 WILD-TYPE" "ZNF704 WILD-TYPE" "ZNF704 WILD-TYPE" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
"ZNF704 WILD-TYPE" "ZNF704 WILD-TYPE"   "ZNF704 MUTATED" "ZNF704 WILD-TYPE" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
"ZNF704 WILD-TYPE" "ZNF704 WILD-TYPE" "ZNF704 WILD-TYPE" "ZNF704 WILD-TYPE" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
"ZNF704 WILD-TYPE" "ZNF704 WILD-TYPE" "ZNF704 WILD-TYPE" "ZNF704 WILD-TYPE" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"ZNF704 WILD-TYPE" "ZNF704 WILD-TYPE" "ZNF704 WILD-TYPE" "ZNF704 WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"ZNF704 WILD-TYPE" "ZNF704 WILD-TYPE" "ZNF704 WILD-TYPE" "ZNF704 WILD-TYPE" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
"ZNF704 WILD-TYPE" "ZNF704 WILD-TYPE" "ZNF704 WILD-TYPE" "ZNF704 WILD-TYPE" 
      TCGA-US-A77J 
"ZNF704 WILD-TYPE" 
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
"ZNF704 WILD-TYPE" "ZNF704 WILD-TYPE" "ZNF704 WILD-TYPE" "ZNF704 WILD-TYPE" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"ZNF704 WILD-TYPE" "ZNF704 WILD-TYPE"   "ZNF704 MUTATED" "ZNF704 WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
"ZNF704 WILD-TYPE" "ZNF704 WILD-TYPE" "ZNF704 WILD-TYPE" "ZNF704 WILD-TYPE" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"ZNF704 WILD-TYPE" "ZNF704 WILD-TYPE" "ZNF704 WILD-TYPE" "ZNF704 WILD-TYPE" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
"ZNF704 WILD-TYPE" "ZNF704 WILD-TYPE" "ZNF704 WILD-TYPE" "ZNF704 WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
"ZNF704 WILD-TYPE" "ZNF704 WILD-TYPE" "ZNF704 WILD-TYPE" "ZNF704 WILD-TYPE" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"ZNF704 WILD-TYPE" "ZNF704 WILD-TYPE" "ZNF704 WILD-TYPE" "ZNF704 WILD-TYPE" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
  "ZNF704 MUTATED" "ZNF704 WILD-TYPE" "ZNF704 WILD-TYPE" "ZNF704 WILD-TYPE" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
"ZNF704 WILD-TYPE" "ZNF704 WILD-TYPE"   "ZNF704 MUTATED" "ZNF704 WILD-TYPE" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
"ZNF704 WILD-TYPE" "ZNF704 WILD-TYPE" "ZNF704 WILD-TYPE" "ZNF704 WILD-TYPE" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
"ZNF704 WILD-TYPE" "ZNF704 WILD-TYPE" "ZNF704 WILD-TYPE" "ZNF704 WILD-TYPE" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
"ZNF704 WILD-TYPE" "ZNF704 WILD-TYPE"   "ZNF704 MUTATED" "ZNF704 WILD-TYPE" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
"ZNF704 WILD-TYPE" "ZNF704 WILD-TYPE" "ZNF704 WILD-TYPE" "ZNF704 WILD-TYPE" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
"ZNF704 WILD-TYPE" "ZNF704 WILD-TYPE" "ZNF704 WILD-TYPE" "ZNF704 WILD-TYPE" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"ZNF704 WILD-TYPE" "ZNF704 WILD-TYPE" "ZNF704 WILD-TYPE" "ZNF704 WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"ZNF704 WILD-TYPE" "ZNF704 WILD-TYPE" "ZNF704 WILD-TYPE" "ZNF704 WILD-TYPE" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
"ZNF704 WILD-TYPE" "ZNF704 WILD-TYPE" "ZNF704 WILD-TYPE" "ZNF704 WILD-TYPE" 
      TCGA-US-A77J 
"ZNF704 WILD-TYPE" 
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
"ZNF704 WILD-TYPE" "ZNF704 WILD-TYPE" "ZNF704 WILD-TYPE" "ZNF704 WILD-TYPE" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"ZNF704 WILD-TYPE" "ZNF704 WILD-TYPE"   "ZNF704 MUTATED" "ZNF704 WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
"ZNF704 WILD-TYPE" "ZNF704 WILD-TYPE" "ZNF704 WILD-TYPE" "ZNF704 WILD-TYPE" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"ZNF704 WILD-TYPE" "ZNF704 WILD-TYPE" "ZNF704 WILD-TYPE" "ZNF704 WILD-TYPE" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
"ZNF704 WILD-TYPE" "ZNF704 WILD-TYPE" "ZNF704 WILD-TYPE" "ZNF704 WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
"ZNF704 WILD-TYPE" "ZNF704 WILD-TYPE" "ZNF704 WILD-TYPE" "ZNF704 WILD-TYPE" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"ZNF704 WILD-TYPE" "ZNF704 WILD-TYPE" "ZNF704 WILD-TYPE" "ZNF704 WILD-TYPE" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
  "ZNF704 MUTATED" "ZNF704 WILD-TYPE" "ZNF704 WILD-TYPE" "ZNF704 WILD-TYPE" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
"ZNF704 WILD-TYPE" "ZNF704 WILD-TYPE"   "ZNF704 MUTATED" "ZNF704 WILD-TYPE" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
"ZNF704 WILD-TYPE" "ZNF704 WILD-TYPE" "ZNF704 WILD-TYPE" "ZNF704 WILD-TYPE" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
"ZNF704 WILD-TYPE" "ZNF704 WILD-TYPE" "ZNF704 WILD-TYPE" "ZNF704 WILD-TYPE" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
"ZNF704 WILD-TYPE" "ZNF704 WILD-TYPE"   "ZNF704 MUTATED" "ZNF704 WILD-TYPE" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
"ZNF704 WILD-TYPE" "ZNF704 WILD-TYPE" "ZNF704 WILD-TYPE" "ZNF704 WILD-TYPE" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
"ZNF704 WILD-TYPE" "ZNF704 WILD-TYPE" "ZNF704 WILD-TYPE" "ZNF704 WILD-TYPE" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"ZNF704 WILD-TYPE" "ZNF704 WILD-TYPE" "ZNF704 WILD-TYPE" "ZNF704 WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"ZNF704 WILD-TYPE" "ZNF704 WILD-TYPE" "ZNF704 WILD-TYPE" "ZNF704 WILD-TYPE" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
"ZNF704 WILD-TYPE" "ZNF704 WILD-TYPE" "ZNF704 WILD-TYPE" "ZNF704 WILD-TYPE" 
      TCGA-US-A77J 
"ZNF704 WILD-TYPE" 
[1] "hr=" "15" 
D210V2, continuous
                  vv
clus               STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  ZNF704 MUTATED          0        0         0         4         0        0
  ZNF704 WILD-TYPE        1        4        11        47         2        3
D210V3, multiclass
                  vv
clus               T1+T2 T3+T4
  ZNF704 MUTATED       1     3
  ZNF704 WILD-TYPE     5    63
D210V4, multiclass
       clus
vv      ZNF704 MUTATED ZNF704 WILD-TYPE
  T1+T2              1                5
  T3+T4              3               63
D210V5, binary
                  cls
clus                0  1
  ZNF704 MUTATED    0  4
  ZNF704 WILD-TYPE 17 50
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ZNF704 MUTATED      0    4
  ZNF704 WILD-TYPE   17   50
   clus
vv  ZNF704 MUTATED ZNF704 WILD-TYPE
  0              0               17
  1              4               50
                  vv
clus               M0 M1 MX
  ZNF704 MUTATED    1  0  3
  ZNF704 WILD-TYPE 38  3 27
D210V6, multiclass
    clus
vv   ZNF704 MUTATED ZNF704 WILD-TYPE
  M0              1               38
  M1              0                3
  MX              3               27
D210V7, binary
                  cls
clus                0  1
  ZNF704 MUTATED    3  1
  ZNF704 WILD-TYPE 33 35
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ZNF704 MUTATED      3    1
  ZNF704 WILD-TYPE   33   35
        clus
vv       ZNF704 MUTATED ZNF704 WILD-TYPE
  FEMALE              3               33
  MALE                1               35
                  vv
clus               PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  ZNF704 MUTATED                                     4
  ZNF704 WILD-TYPE                                  61
                  vv
clus               PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  ZNF704 MUTATED                                       0
  ZNF704 WILD-TYPE                                     4
                  vv
clus               PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  ZNF704 MUTATED                                                  0
  ZNF704 WILD-TYPE                                                2
D210V8, multiclass
                                                  clus
vv                                                 ZNF704 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                           4
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                         0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA              0
                                                  clus
vv                                                 ZNF704 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                            61
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                           4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                2
D210V9, continuous
[1] "Remove cluster labels:" "ZNF704 MUTATED"        
clus
  ZNF704 MUTATED ZNF704 WILD-TYPE 
               2               20 
      TCGA-F2-6880       TCGA-FB-A4P6       TCGA-FB-A5VM       TCGA-FB-A78T 
"ZNF704 WILD-TYPE" "ZNF704 WILD-TYPE" "ZNF704 WILD-TYPE" "ZNF704 WILD-TYPE" 
      TCGA-FB-A7DR       TCGA-H6-8124       TCGA-H6-A45N       TCGA-H8-A6C1 
"ZNF704 WILD-TYPE" "ZNF704 WILD-TYPE" "ZNF704 WILD-TYPE" "ZNF704 WILD-TYPE" 
      TCGA-IB-7644       TCGA-IB-7649       TCGA-IB-7651       TCGA-IB-7885 
"ZNF704 WILD-TYPE" "ZNF704 WILD-TYPE" "ZNF704 WILD-TYPE" "ZNF704 WILD-TYPE" 
      TCGA-IB-7887       TCGA-IB-7891       TCGA-IB-8126       TCGA-IB-8127 
"ZNF704 WILD-TYPE" "ZNF704 WILD-TYPE" "ZNF704 WILD-TYPE" "ZNF704 WILD-TYPE" 
      TCGA-IB-A5SS       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"ZNF704 WILD-TYPE" "ZNF704 WILD-TYPE" "ZNF704 WILD-TYPE" "ZNF704 WILD-TYPE" 
D210V10, continuous
[1] "Remove cluster labels:" "ZNF704 MUTATED"        
clus
  ZNF704 MUTATED ZNF704 WILD-TYPE 
               2               17 
      TCGA-FB-A4P6       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
"ZNF704 WILD-TYPE" "ZNF704 WILD-TYPE" "ZNF704 WILD-TYPE" "ZNF704 WILD-TYPE" 
      TCGA-H6-8124       TCGA-H8-A6C1       TCGA-IB-7644       TCGA-IB-7649 
"ZNF704 WILD-TYPE" "ZNF704 WILD-TYPE" "ZNF704 WILD-TYPE" "ZNF704 WILD-TYPE" 
      TCGA-IB-7651       TCGA-IB-7885       TCGA-IB-7891       TCGA-IB-8126 
"ZNF704 WILD-TYPE" "ZNF704 WILD-TYPE" "ZNF704 WILD-TYPE" "ZNF704 WILD-TYPE" 
      TCGA-IB-8127       TCGA-IB-A5SS       TCGA-IB-A6UG       TCGA-LB-A7SX 
"ZNF704 WILD-TYPE" "ZNF704 WILD-TYPE" "ZNF704 WILD-TYPE" "ZNF704 WILD-TYPE" 
      TCGA-OE-A75W 
"ZNF704 WILD-TYPE" 
                  vv
clus               R0 R1 RX
  ZNF704 MUTATED    2  2  0
  ZNF704 WILD-TYPE 40 22  2
D210V11, multiclass
    clus
vv   ZNF704 MUTATED ZNF704 WILD-TYPE
  R0              2               40
  R1              2               22
  RX              0                2
D210V12, continuous

Clustering(211) Variable = SYNGAP1 MUTATION ANALYSIS
D211V1, survival
                   sevent
clus2                0  1
  SYNGAP1 MUTATED    3  3
  SYNGAP1 WILD-TYPE 37 26
  SYNGAP1 MUTATED SYNGAP1 WILD-TYPE 
                6                63 
  SYNGAP1 MUTATED SYNGAP1 WILD-TYPE 
                3                26 
$`SYNGAP1 MUTATED`
TCGA-F2-7273 TCGA-HZ-8317 TCGA-IB-7649 TCGA-IB-7651 TCGA-IB-7885 TCGA-IB-8127 
       11.84         0.53        15.35        19.82        27.98        17.16 

$`SYNGAP1 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H TCGA-FB-A4P5 
       10.98         9.70         7.10         5.03        19.27         0.13 
TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR TCGA-FZ-5920 
       11.93        12.66         2.47         0.03         5.46         2.01 
TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7289 
       36.20        20.81        12.89         7.66        13.02         7.89 
TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 
        0.92         0.66         0.13         0.26        12.13        11.87 
TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 
        0.26         0.62         0.79         0.69         3.95         0.92 
TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK 
        0.16         2.99         0.76         0.95         6.38         1.51 
TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7652 TCGA-IB-7886 
       11.41        49.38         4.77        21.90        15.65         4.04 
TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-7893 
        3.62        43.79        15.81        19.66        16.04         3.85 
TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS 
       15.98         0.56        10.82         9.86         7.20        15.12 
TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W TCGA-PZ-A5RE TCGA-Q3-A5QY 
        0.26         1.35         4.18         3.62         8.12        13.68 
TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
       16.80        14.14        18.67 

  SYNGAP1 MUTATED SYNGAP1 WILD-TYPE 
             0.53              0.03 
  SYNGAP1 MUTATED SYNGAP1 WILD-TYPE 
            27.98             49.38 
  SYNGAP1 MUTATED SYNGAP1 WILD-TYPE 
           16.255             7.100 
[1] "0.5 - 28.0 (16.3)" "0.0 - 49.4 (7.1)" 
       TCGA-F2-6879        TCGA-F2-6880        TCGA-F2-7273        TCGA-F2-7276 
"SYNGAP1 WILD-TYPE" "SYNGAP1 WILD-TYPE"   "SYNGAP1 MUTATED" "SYNGAP1 WILD-TYPE" 
       TCGA-F2-A44G        TCGA-F2-A44H        TCGA-FB-A4P5        TCGA-FB-A4P6 
"SYNGAP1 WILD-TYPE" "SYNGAP1 WILD-TYPE" "SYNGAP1 WILD-TYPE" "SYNGAP1 WILD-TYPE" 
       TCGA-FB-A545        TCGA-FB-A5VM        TCGA-FB-A78T        TCGA-FB-A7DR 
"SYNGAP1 WILD-TYPE" "SYNGAP1 WILD-TYPE" "SYNGAP1 WILD-TYPE" "SYNGAP1 WILD-TYPE" 
       TCGA-FZ-5920        TCGA-FZ-5922        TCGA-FZ-5923        TCGA-H6-8124 
"SYNGAP1 WILD-TYPE" "SYNGAP1 WILD-TYPE" "SYNGAP1 WILD-TYPE" "SYNGAP1 WILD-TYPE" 
       TCGA-H6-A45N        TCGA-H8-A6C1        TCGA-HZ-7289        TCGA-HZ-7918 
"SYNGAP1 WILD-TYPE" "SYNGAP1 WILD-TYPE" "SYNGAP1 WILD-TYPE" "SYNGAP1 WILD-TYPE" 
       TCGA-HZ-7919        TCGA-HZ-7922        TCGA-HZ-7923        TCGA-HZ-7924 
"SYNGAP1 WILD-TYPE" "SYNGAP1 WILD-TYPE" "SYNGAP1 WILD-TYPE" "SYNGAP1 WILD-TYPE" 
       TCGA-HZ-7925        TCGA-HZ-7926        TCGA-HZ-8001        TCGA-HZ-8002 
"SYNGAP1 WILD-TYPE" "SYNGAP1 WILD-TYPE" "SYNGAP1 WILD-TYPE" "SYNGAP1 WILD-TYPE" 
       TCGA-HZ-8003        TCGA-HZ-8005        TCGA-HZ-8315        TCGA-HZ-8317 
"SYNGAP1 WILD-TYPE" "SYNGAP1 WILD-TYPE" "SYNGAP1 WILD-TYPE"   "SYNGAP1 MUTATED" 
       TCGA-HZ-8636        TCGA-HZ-8638        TCGA-HZ-A49G        TCGA-HZ-A49H 
"SYNGAP1 WILD-TYPE" "SYNGAP1 WILD-TYPE" "SYNGAP1 WILD-TYPE" "SYNGAP1 WILD-TYPE" 
       TCGA-HZ-A4BH        TCGA-HZ-A4BK        TCGA-IB-7644        TCGA-IB-7645 
"SYNGAP1 WILD-TYPE" "SYNGAP1 WILD-TYPE" "SYNGAP1 WILD-TYPE" "SYNGAP1 WILD-TYPE" 
       TCGA-IB-7646        TCGA-IB-7647        TCGA-IB-7649        TCGA-IB-7651 
"SYNGAP1 WILD-TYPE" "SYNGAP1 WILD-TYPE"   "SYNGAP1 MUTATED"   "SYNGAP1 MUTATED" 
       TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-7886        TCGA-IB-7887 
"SYNGAP1 WILD-TYPE"   "SYNGAP1 MUTATED" "SYNGAP1 WILD-TYPE" "SYNGAP1 WILD-TYPE" 
       TCGA-IB-7888        TCGA-IB-7889        TCGA-IB-7890        TCGA-IB-7891 
"SYNGAP1 WILD-TYPE" "SYNGAP1 WILD-TYPE" "SYNGAP1 WILD-TYPE" "SYNGAP1 WILD-TYPE" 
       TCGA-IB-7893        TCGA-IB-7897        TCGA-IB-8126        TCGA-IB-8127 
"SYNGAP1 WILD-TYPE" "SYNGAP1 WILD-TYPE" "SYNGAP1 WILD-TYPE"   "SYNGAP1 MUTATED" 
       TCGA-IB-A5SO        TCGA-IB-A5SP        TCGA-IB-A5SQ        TCGA-IB-A5SS 
"SYNGAP1 WILD-TYPE" "SYNGAP1 WILD-TYPE" "SYNGAP1 WILD-TYPE" "SYNGAP1 WILD-TYPE" 
       TCGA-IB-A5ST        TCGA-IB-A6UG        TCGA-LB-A7SX        TCGA-OE-A75W 
"SYNGAP1 WILD-TYPE" "SYNGAP1 WILD-TYPE" "SYNGAP1 WILD-TYPE" "SYNGAP1 WILD-TYPE" 
       TCGA-PZ-A5RE        TCGA-Q3-A5QY        TCGA-US-A779        TCGA-US-A77E 
"SYNGAP1 WILD-TYPE" "SYNGAP1 WILD-TYPE" "SYNGAP1 WILD-TYPE" "SYNGAP1 WILD-TYPE" 
       TCGA-US-A77J 
"SYNGAP1 WILD-TYPE" 
       TCGA-F2-6879        TCGA-F2-6880        TCGA-F2-7273        TCGA-F2-7276 
"SYNGAP1 WILD-TYPE" "SYNGAP1 WILD-TYPE"   "SYNGAP1 MUTATED" "SYNGAP1 WILD-TYPE" 
       TCGA-F2-A44G        TCGA-F2-A44H        TCGA-FB-A4P5        TCGA-FB-A4P6 
"SYNGAP1 WILD-TYPE" "SYNGAP1 WILD-TYPE" "SYNGAP1 WILD-TYPE" "SYNGAP1 WILD-TYPE" 
       TCGA-FB-A545        TCGA-FB-A5VM        TCGA-FB-A78T        TCGA-FB-A7DR 
"SYNGAP1 WILD-TYPE" "SYNGAP1 WILD-TYPE" "SYNGAP1 WILD-TYPE" "SYNGAP1 WILD-TYPE" 
       TCGA-FZ-5920        TCGA-FZ-5922        TCGA-FZ-5923        TCGA-H6-8124 
"SYNGAP1 WILD-TYPE" "SYNGAP1 WILD-TYPE" "SYNGAP1 WILD-TYPE" "SYNGAP1 WILD-TYPE" 
       TCGA-H6-A45N        TCGA-H8-A6C1        TCGA-HZ-7289        TCGA-HZ-7918 
"SYNGAP1 WILD-TYPE" "SYNGAP1 WILD-TYPE" "SYNGAP1 WILD-TYPE" "SYNGAP1 WILD-TYPE" 
       TCGA-HZ-7919        TCGA-HZ-7922        TCGA-HZ-7923        TCGA-HZ-7924 
"SYNGAP1 WILD-TYPE" "SYNGAP1 WILD-TYPE" "SYNGAP1 WILD-TYPE" "SYNGAP1 WILD-TYPE" 
       TCGA-HZ-7925        TCGA-HZ-7926        TCGA-HZ-8001        TCGA-HZ-8002 
"SYNGAP1 WILD-TYPE" "SYNGAP1 WILD-TYPE" "SYNGAP1 WILD-TYPE" "SYNGAP1 WILD-TYPE" 
       TCGA-HZ-8003        TCGA-HZ-8005        TCGA-HZ-8315        TCGA-HZ-8317 
"SYNGAP1 WILD-TYPE" "SYNGAP1 WILD-TYPE" "SYNGAP1 WILD-TYPE"   "SYNGAP1 MUTATED" 
       TCGA-HZ-8636        TCGA-HZ-8638        TCGA-HZ-A49G        TCGA-HZ-A49H 
"SYNGAP1 WILD-TYPE" "SYNGAP1 WILD-TYPE" "SYNGAP1 WILD-TYPE" "SYNGAP1 WILD-TYPE" 
       TCGA-HZ-A4BH        TCGA-HZ-A4BK        TCGA-IB-7644        TCGA-IB-7645 
"SYNGAP1 WILD-TYPE" "SYNGAP1 WILD-TYPE" "SYNGAP1 WILD-TYPE" "SYNGAP1 WILD-TYPE" 
       TCGA-IB-7646        TCGA-IB-7647        TCGA-IB-7649        TCGA-IB-7651 
"SYNGAP1 WILD-TYPE" "SYNGAP1 WILD-TYPE"   "SYNGAP1 MUTATED"   "SYNGAP1 MUTATED" 
       TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-7886        TCGA-IB-7887 
"SYNGAP1 WILD-TYPE"   "SYNGAP1 MUTATED" "SYNGAP1 WILD-TYPE" "SYNGAP1 WILD-TYPE" 
       TCGA-IB-7888        TCGA-IB-7889        TCGA-IB-7890        TCGA-IB-7891 
"SYNGAP1 WILD-TYPE" "SYNGAP1 WILD-TYPE" "SYNGAP1 WILD-TYPE" "SYNGAP1 WILD-TYPE" 
       TCGA-IB-7893        TCGA-IB-7897        TCGA-IB-8126        TCGA-IB-8127 
"SYNGAP1 WILD-TYPE" "SYNGAP1 WILD-TYPE" "SYNGAP1 WILD-TYPE"   "SYNGAP1 MUTATED" 
       TCGA-IB-A5SO        TCGA-IB-A5SP        TCGA-IB-A5SQ        TCGA-IB-A5SS 
"SYNGAP1 WILD-TYPE" "SYNGAP1 WILD-TYPE" "SYNGAP1 WILD-TYPE" "SYNGAP1 WILD-TYPE" 
       TCGA-IB-A5ST        TCGA-IB-A6UG        TCGA-LB-A7SX        TCGA-OE-A75W 
"SYNGAP1 WILD-TYPE" "SYNGAP1 WILD-TYPE" "SYNGAP1 WILD-TYPE" "SYNGAP1 WILD-TYPE" 
       TCGA-PZ-A5RE        TCGA-Q3-A5QY        TCGA-US-A779        TCGA-US-A77E 
"SYNGAP1 WILD-TYPE" "SYNGAP1 WILD-TYPE" "SYNGAP1 WILD-TYPE" "SYNGAP1 WILD-TYPE" 
       TCGA-US-A77J 
"SYNGAP1 WILD-TYPE" 
       TCGA-F2-6879        TCGA-F2-6880        TCGA-F2-7273        TCGA-F2-7276 
"SYNGAP1 WILD-TYPE" "SYNGAP1 WILD-TYPE"   "SYNGAP1 MUTATED" "SYNGAP1 WILD-TYPE" 
       TCGA-F2-A44G        TCGA-F2-A44H        TCGA-FB-A4P5        TCGA-FB-A4P6 
"SYNGAP1 WILD-TYPE" "SYNGAP1 WILD-TYPE" "SYNGAP1 WILD-TYPE" "SYNGAP1 WILD-TYPE" 
       TCGA-FB-A545        TCGA-FB-A5VM        TCGA-FB-A78T        TCGA-FB-A7DR 
"SYNGAP1 WILD-TYPE" "SYNGAP1 WILD-TYPE" "SYNGAP1 WILD-TYPE" "SYNGAP1 WILD-TYPE" 
       TCGA-FZ-5920        TCGA-FZ-5922        TCGA-FZ-5923        TCGA-H6-8124 
"SYNGAP1 WILD-TYPE" "SYNGAP1 WILD-TYPE" "SYNGAP1 WILD-TYPE" "SYNGAP1 WILD-TYPE" 
       TCGA-H6-A45N        TCGA-H8-A6C1        TCGA-HZ-7289        TCGA-HZ-7918 
"SYNGAP1 WILD-TYPE" "SYNGAP1 WILD-TYPE" "SYNGAP1 WILD-TYPE" "SYNGAP1 WILD-TYPE" 
       TCGA-HZ-7919        TCGA-HZ-7922        TCGA-HZ-7923        TCGA-HZ-7924 
"SYNGAP1 WILD-TYPE" "SYNGAP1 WILD-TYPE" "SYNGAP1 WILD-TYPE" "SYNGAP1 WILD-TYPE" 
       TCGA-HZ-7925        TCGA-HZ-7926        TCGA-HZ-8001        TCGA-HZ-8002 
"SYNGAP1 WILD-TYPE" "SYNGAP1 WILD-TYPE" "SYNGAP1 WILD-TYPE" "SYNGAP1 WILD-TYPE" 
       TCGA-HZ-8003        TCGA-HZ-8005        TCGA-HZ-8315        TCGA-HZ-8317 
"SYNGAP1 WILD-TYPE" "SYNGAP1 WILD-TYPE" "SYNGAP1 WILD-TYPE"   "SYNGAP1 MUTATED" 
       TCGA-HZ-8636        TCGA-HZ-8638        TCGA-HZ-A49G        TCGA-HZ-A49H 
"SYNGAP1 WILD-TYPE" "SYNGAP1 WILD-TYPE" "SYNGAP1 WILD-TYPE" "SYNGAP1 WILD-TYPE" 
       TCGA-HZ-A4BH        TCGA-HZ-A4BK        TCGA-IB-7644        TCGA-IB-7645 
"SYNGAP1 WILD-TYPE" "SYNGAP1 WILD-TYPE" "SYNGAP1 WILD-TYPE" "SYNGAP1 WILD-TYPE" 
       TCGA-IB-7646        TCGA-IB-7647        TCGA-IB-7649        TCGA-IB-7651 
"SYNGAP1 WILD-TYPE" "SYNGAP1 WILD-TYPE"   "SYNGAP1 MUTATED"   "SYNGAP1 MUTATED" 
       TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-7886        TCGA-IB-7887 
"SYNGAP1 WILD-TYPE"   "SYNGAP1 MUTATED" "SYNGAP1 WILD-TYPE" "SYNGAP1 WILD-TYPE" 
       TCGA-IB-7888        TCGA-IB-7889        TCGA-IB-7890        TCGA-IB-7891 
"SYNGAP1 WILD-TYPE" "SYNGAP1 WILD-TYPE" "SYNGAP1 WILD-TYPE" "SYNGAP1 WILD-TYPE" 
       TCGA-IB-7893        TCGA-IB-7897        TCGA-IB-8126        TCGA-IB-8127 
"SYNGAP1 WILD-TYPE" "SYNGAP1 WILD-TYPE" "SYNGAP1 WILD-TYPE"   "SYNGAP1 MUTATED" 
       TCGA-IB-A5SO        TCGA-IB-A5SP        TCGA-IB-A5SQ        TCGA-IB-A5SS 
"SYNGAP1 WILD-TYPE" "SYNGAP1 WILD-TYPE" "SYNGAP1 WILD-TYPE" "SYNGAP1 WILD-TYPE" 
       TCGA-IB-A5ST        TCGA-IB-A6UG        TCGA-LB-A7SX        TCGA-OE-A75W 
"SYNGAP1 WILD-TYPE" "SYNGAP1 WILD-TYPE" "SYNGAP1 WILD-TYPE" "SYNGAP1 WILD-TYPE" 
       TCGA-PZ-A5RE        TCGA-Q3-A5QY        TCGA-US-A779        TCGA-US-A77E 
"SYNGAP1 WILD-TYPE" "SYNGAP1 WILD-TYPE" "SYNGAP1 WILD-TYPE" "SYNGAP1 WILD-TYPE" 
       TCGA-US-A77J 
"SYNGAP1 WILD-TYPE" 
[1] "hr=" "1.6"
D211V2, continuous
                   vv
clus                STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  SYNGAP1 MUTATED          0        0         0         6         0        0
  SYNGAP1 WILD-TYPE        1        4        11        45         2        3
D211V3, multiclass
                   vv
clus                T1+T2 T3+T4
  SYNGAP1 MUTATED       0     6
  SYNGAP1 WILD-TYPE     6    60
D211V4, multiclass
       clus
vv      SYNGAP1 MUTATED SYNGAP1 WILD-TYPE
  T1+T2               0                 6
  T3+T4               6                60
D211V5, binary
                   cls
clus                 0  1
  SYNGAP1 MUTATED    0  6
  SYNGAP1 WILD-TYPE 17 48
[1] "tbl2"
                   cls
clus                [,1] [,2]
  SYNGAP1 MUTATED      0    6
  SYNGAP1 WILD-TYPE   17   48
   clus
vv  SYNGAP1 MUTATED SYNGAP1 WILD-TYPE
  0               0                17
  1               6                48
                   vv
clus                M0 M1 MX
  SYNGAP1 MUTATED    5  0  1
  SYNGAP1 WILD-TYPE 34  3 29
D211V6, multiclass
    clus
vv   SYNGAP1 MUTATED SYNGAP1 WILD-TYPE
  M0               5                34
  M1               0                 3
  MX               1                29
D211V7, binary
                   cls
clus                 0  1
  SYNGAP1 MUTATED    4  2
  SYNGAP1 WILD-TYPE 32 34
[1] "tbl2"
                   cls
clus                [,1] [,2]
  SYNGAP1 MUTATED      4    2
  SYNGAP1 WILD-TYPE   32   34
        clus
vv       SYNGAP1 MUTATED SYNGAP1 WILD-TYPE
  FEMALE               4                32
  MALE                 2                34
                   vv
clus                PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  SYNGAP1 MUTATED                                     6
  SYNGAP1 WILD-TYPE                                  59
                   vv
clus                PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  SYNGAP1 MUTATED                                       0
  SYNGAP1 WILD-TYPE                                     4
                   vv
clus                PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  SYNGAP1 MUTATED                                                  0
  SYNGAP1 WILD-TYPE                                                2
D211V8, multiclass
                                                  clus
vv                                                 SYNGAP1 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                            6
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                          0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA               0
                                                  clus
vv                                                 SYNGAP1 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                             59
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                            4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                 2
D211V9, continuous
D211V10, continuous
                   vv
clus                R0 R1 RX
  SYNGAP1 MUTATED    2  4  0
  SYNGAP1 WILD-TYPE 40 20  2
D211V11, multiclass
    clus
vv   SYNGAP1 MUTATED SYNGAP1 WILD-TYPE
  R0               2                40
  R1               4                20
  RX               0                 2
D211V12, continuous

Clustering(212) Variable = FKBP15 MUTATION ANALYSIS
D212V1, survival
                  sevent
clus2               0  1
  FKBP15 MUTATED    1  5
  FKBP15 WILD-TYPE 39 24
  FKBP15 MUTATED FKBP15 WILD-TYPE 
               6               63 
  FKBP15 MUTATED FKBP15 WILD-TYPE 
               5               24 
$`FKBP15 MUTATED`
TCGA-FB-A545 TCGA-HZ-8005 TCGA-IB-7647 TCGA-IB-7651 TCGA-IB-7897 TCGA-IB-A5SQ 
       12.66         3.95        21.90        19.82        15.98         7.20 

$`FKBP15 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P5 TCGA-FB-A4P6 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR TCGA-FZ-5920 
        0.13        11.93         2.47         0.03         5.46         2.01 
TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7289 
       36.20        20.81        12.89         7.66        13.02         7.89 
TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 
        0.92         0.66         0.13         0.26        12.13        11.87 
TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8315 TCGA-HZ-8317 
        0.26         0.62         0.79         0.69         0.92         0.53 
TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK 
        0.16         2.99         0.76         0.95         6.38         1.51 
TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7649 TCGA-IB-7652 TCGA-IB-7885 
       11.41        49.38         4.77        15.35        15.65        27.98 
TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 
        4.04         3.62        43.79        15.81        19.66        16.04 
TCGA-IB-7893 TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SS 
        3.85         0.56        17.16        10.82         9.86        15.12 
TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W TCGA-PZ-A5RE TCGA-Q3-A5QY 
        0.26         1.35         4.18         3.62         8.12        13.68 
TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
       16.80        14.14        18.67 

  FKBP15 MUTATED FKBP15 WILD-TYPE 
            3.95             0.03 
  FKBP15 MUTATED FKBP15 WILD-TYPE 
           21.90            49.38 
  FKBP15 MUTATED FKBP15 WILD-TYPE 
           14.32             7.10 
[1] "4.0 - 21.9 (14.3)" "0.0 - 49.4 (7.1)" 
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
"FKBP15 WILD-TYPE" "FKBP15 WILD-TYPE" "FKBP15 WILD-TYPE" "FKBP15 WILD-TYPE" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"FKBP15 WILD-TYPE" "FKBP15 WILD-TYPE" "FKBP15 WILD-TYPE" "FKBP15 WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
  "FKBP15 MUTATED" "FKBP15 WILD-TYPE" "FKBP15 WILD-TYPE" "FKBP15 WILD-TYPE" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"FKBP15 WILD-TYPE" "FKBP15 WILD-TYPE" "FKBP15 WILD-TYPE" "FKBP15 WILD-TYPE" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
"FKBP15 WILD-TYPE" "FKBP15 WILD-TYPE" "FKBP15 WILD-TYPE" "FKBP15 WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
"FKBP15 WILD-TYPE" "FKBP15 WILD-TYPE" "FKBP15 WILD-TYPE" "FKBP15 WILD-TYPE" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"FKBP15 WILD-TYPE" "FKBP15 WILD-TYPE" "FKBP15 WILD-TYPE" "FKBP15 WILD-TYPE" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
"FKBP15 WILD-TYPE"   "FKBP15 MUTATED" "FKBP15 WILD-TYPE" "FKBP15 WILD-TYPE" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
"FKBP15 WILD-TYPE" "FKBP15 WILD-TYPE" "FKBP15 WILD-TYPE" "FKBP15 WILD-TYPE" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
"FKBP15 WILD-TYPE" "FKBP15 WILD-TYPE" "FKBP15 WILD-TYPE" "FKBP15 WILD-TYPE" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
"FKBP15 WILD-TYPE"   "FKBP15 MUTATED" "FKBP15 WILD-TYPE"   "FKBP15 MUTATED" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
"FKBP15 WILD-TYPE" "FKBP15 WILD-TYPE" "FKBP15 WILD-TYPE" "FKBP15 WILD-TYPE" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
"FKBP15 WILD-TYPE" "FKBP15 WILD-TYPE" "FKBP15 WILD-TYPE" "FKBP15 WILD-TYPE" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
"FKBP15 WILD-TYPE"   "FKBP15 MUTATED" "FKBP15 WILD-TYPE" "FKBP15 WILD-TYPE" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"FKBP15 WILD-TYPE" "FKBP15 WILD-TYPE"   "FKBP15 MUTATED" "FKBP15 WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"FKBP15 WILD-TYPE" "FKBP15 WILD-TYPE" "FKBP15 WILD-TYPE" "FKBP15 WILD-TYPE" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
"FKBP15 WILD-TYPE" "FKBP15 WILD-TYPE" "FKBP15 WILD-TYPE" "FKBP15 WILD-TYPE" 
      TCGA-US-A77J 
"FKBP15 WILD-TYPE" 
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
"FKBP15 WILD-TYPE" "FKBP15 WILD-TYPE" "FKBP15 WILD-TYPE" "FKBP15 WILD-TYPE" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"FKBP15 WILD-TYPE" "FKBP15 WILD-TYPE" "FKBP15 WILD-TYPE" "FKBP15 WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
  "FKBP15 MUTATED" "FKBP15 WILD-TYPE" "FKBP15 WILD-TYPE" "FKBP15 WILD-TYPE" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"FKBP15 WILD-TYPE" "FKBP15 WILD-TYPE" "FKBP15 WILD-TYPE" "FKBP15 WILD-TYPE" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
"FKBP15 WILD-TYPE" "FKBP15 WILD-TYPE" "FKBP15 WILD-TYPE" "FKBP15 WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
"FKBP15 WILD-TYPE" "FKBP15 WILD-TYPE" "FKBP15 WILD-TYPE" "FKBP15 WILD-TYPE" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"FKBP15 WILD-TYPE" "FKBP15 WILD-TYPE" "FKBP15 WILD-TYPE" "FKBP15 WILD-TYPE" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
"FKBP15 WILD-TYPE"   "FKBP15 MUTATED" "FKBP15 WILD-TYPE" "FKBP15 WILD-TYPE" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
"FKBP15 WILD-TYPE" "FKBP15 WILD-TYPE" "FKBP15 WILD-TYPE" "FKBP15 WILD-TYPE" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
"FKBP15 WILD-TYPE" "FKBP15 WILD-TYPE" "FKBP15 WILD-TYPE" "FKBP15 WILD-TYPE" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
"FKBP15 WILD-TYPE"   "FKBP15 MUTATED" "FKBP15 WILD-TYPE"   "FKBP15 MUTATED" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
"FKBP15 WILD-TYPE" "FKBP15 WILD-TYPE" "FKBP15 WILD-TYPE" "FKBP15 WILD-TYPE" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
"FKBP15 WILD-TYPE" "FKBP15 WILD-TYPE" "FKBP15 WILD-TYPE" "FKBP15 WILD-TYPE" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
"FKBP15 WILD-TYPE"   "FKBP15 MUTATED" "FKBP15 WILD-TYPE" "FKBP15 WILD-TYPE" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"FKBP15 WILD-TYPE" "FKBP15 WILD-TYPE"   "FKBP15 MUTATED" "FKBP15 WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"FKBP15 WILD-TYPE" "FKBP15 WILD-TYPE" "FKBP15 WILD-TYPE" "FKBP15 WILD-TYPE" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
"FKBP15 WILD-TYPE" "FKBP15 WILD-TYPE" "FKBP15 WILD-TYPE" "FKBP15 WILD-TYPE" 
      TCGA-US-A77J 
"FKBP15 WILD-TYPE" 
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
"FKBP15 WILD-TYPE" "FKBP15 WILD-TYPE" "FKBP15 WILD-TYPE" "FKBP15 WILD-TYPE" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"FKBP15 WILD-TYPE" "FKBP15 WILD-TYPE" "FKBP15 WILD-TYPE" "FKBP15 WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
  "FKBP15 MUTATED" "FKBP15 WILD-TYPE" "FKBP15 WILD-TYPE" "FKBP15 WILD-TYPE" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"FKBP15 WILD-TYPE" "FKBP15 WILD-TYPE" "FKBP15 WILD-TYPE" "FKBP15 WILD-TYPE" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
"FKBP15 WILD-TYPE" "FKBP15 WILD-TYPE" "FKBP15 WILD-TYPE" "FKBP15 WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
"FKBP15 WILD-TYPE" "FKBP15 WILD-TYPE" "FKBP15 WILD-TYPE" "FKBP15 WILD-TYPE" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"FKBP15 WILD-TYPE" "FKBP15 WILD-TYPE" "FKBP15 WILD-TYPE" "FKBP15 WILD-TYPE" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
"FKBP15 WILD-TYPE"   "FKBP15 MUTATED" "FKBP15 WILD-TYPE" "FKBP15 WILD-TYPE" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
"FKBP15 WILD-TYPE" "FKBP15 WILD-TYPE" "FKBP15 WILD-TYPE" "FKBP15 WILD-TYPE" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
"FKBP15 WILD-TYPE" "FKBP15 WILD-TYPE" "FKBP15 WILD-TYPE" "FKBP15 WILD-TYPE" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
"FKBP15 WILD-TYPE"   "FKBP15 MUTATED" "FKBP15 WILD-TYPE"   "FKBP15 MUTATED" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
"FKBP15 WILD-TYPE" "FKBP15 WILD-TYPE" "FKBP15 WILD-TYPE" "FKBP15 WILD-TYPE" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
"FKBP15 WILD-TYPE" "FKBP15 WILD-TYPE" "FKBP15 WILD-TYPE" "FKBP15 WILD-TYPE" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
"FKBP15 WILD-TYPE"   "FKBP15 MUTATED" "FKBP15 WILD-TYPE" "FKBP15 WILD-TYPE" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"FKBP15 WILD-TYPE" "FKBP15 WILD-TYPE"   "FKBP15 MUTATED" "FKBP15 WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"FKBP15 WILD-TYPE" "FKBP15 WILD-TYPE" "FKBP15 WILD-TYPE" "FKBP15 WILD-TYPE" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
"FKBP15 WILD-TYPE" "FKBP15 WILD-TYPE" "FKBP15 WILD-TYPE" "FKBP15 WILD-TYPE" 
      TCGA-US-A77J 
"FKBP15 WILD-TYPE" 
[1] "hr=" "1.3"
D212V2, continuous
                  vv
clus               STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  FKBP15 MUTATED          0        2         0         5         0        0
  FKBP15 WILD-TYPE        1        2        11        46         2        3
D212V3, multiclass
                  vv
clus               T1+T2 T3+T4
  FKBP15 MUTATED       2     5
  FKBP15 WILD-TYPE     4    61
D212V4, multiclass
       clus
vv      FKBP15 MUTATED FKBP15 WILD-TYPE
  T1+T2              2                4
  T3+T4              5               61
D212V5, binary
                  cls
clus                0  1
  FKBP15 MUTATED    2  5
  FKBP15 WILD-TYPE 15 49
[1] "tbl2"
                  cls
clus               [,1] [,2]
  FKBP15 MUTATED      2    5
  FKBP15 WILD-TYPE   15   49
   clus
vv  FKBP15 MUTATED FKBP15 WILD-TYPE
  0              2               15
  1              5               49
                  vv
clus               M0 M1 MX
  FKBP15 MUTATED    5  0  2
  FKBP15 WILD-TYPE 34  3 28
D212V6, multiclass
    clus
vv   FKBP15 MUTATED FKBP15 WILD-TYPE
  M0              5               34
  M1              0                3
  MX              2               28
D212V7, binary
                  cls
clus                0  1
  FKBP15 MUTATED    5  2
  FKBP15 WILD-TYPE 31 34
[1] "tbl2"
                  cls
clus               [,1] [,2]
  FKBP15 MUTATED      5    2
  FKBP15 WILD-TYPE   31   34
        clus
vv       FKBP15 MUTATED FKBP15 WILD-TYPE
  FEMALE              5               31
  MALE                2               34
                  vv
clus               PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  FKBP15 MUTATED                                     7
  FKBP15 WILD-TYPE                                  58
                  vv
clus               PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  FKBP15 MUTATED                                       0
  FKBP15 WILD-TYPE                                     4
                  vv
clus               PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  FKBP15 MUTATED                                                  0
  FKBP15 WILD-TYPE                                                2
D212V8, multiclass
                                                  clus
vv                                                 FKBP15 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                           7
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                         0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA              0
                                                  clus
vv                                                 FKBP15 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                            58
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                           4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                2
D212V9, continuous
[1] "Remove cluster labels:" "FKBP15 MUTATED"        
clus
  FKBP15 MUTATED FKBP15 WILD-TYPE 
               1               21 
      TCGA-F2-6880       TCGA-FB-A4P5       TCGA-FB-A4P6       TCGA-FB-A5VM 
"FKBP15 WILD-TYPE" "FKBP15 WILD-TYPE" "FKBP15 WILD-TYPE" "FKBP15 WILD-TYPE" 
      TCGA-FB-A78T       TCGA-FB-A7DR       TCGA-H6-8124       TCGA-H6-A45N 
"FKBP15 WILD-TYPE" "FKBP15 WILD-TYPE" "FKBP15 WILD-TYPE" "FKBP15 WILD-TYPE" 
      TCGA-H8-A6C1       TCGA-IB-7644       TCGA-IB-7649       TCGA-IB-7885 
"FKBP15 WILD-TYPE" "FKBP15 WILD-TYPE" "FKBP15 WILD-TYPE" "FKBP15 WILD-TYPE" 
      TCGA-IB-7886       TCGA-IB-7887       TCGA-IB-7891       TCGA-IB-8126 
"FKBP15 WILD-TYPE" "FKBP15 WILD-TYPE" "FKBP15 WILD-TYPE" "FKBP15 WILD-TYPE" 
      TCGA-IB-8127       TCGA-IB-A5SS       TCGA-IB-A6UG       TCGA-LB-A7SX 
"FKBP15 WILD-TYPE" "FKBP15 WILD-TYPE" "FKBP15 WILD-TYPE" "FKBP15 WILD-TYPE" 
      TCGA-OE-A75W 
"FKBP15 WILD-TYPE" 
D212V10, continuous
[1] "Remove cluster labels:" "FKBP15 MUTATED"        
clus
  FKBP15 MUTATED FKBP15 WILD-TYPE 
               1               18 
      TCGA-FB-A4P5       TCGA-FB-A4P6       TCGA-FB-A5VM       TCGA-FB-A78T 
"FKBP15 WILD-TYPE" "FKBP15 WILD-TYPE" "FKBP15 WILD-TYPE" "FKBP15 WILD-TYPE" 
      TCGA-FB-A7DR       TCGA-H6-8124       TCGA-H8-A6C1       TCGA-IB-7644 
"FKBP15 WILD-TYPE" "FKBP15 WILD-TYPE" "FKBP15 WILD-TYPE" "FKBP15 WILD-TYPE" 
      TCGA-IB-7649       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7891 
"FKBP15 WILD-TYPE" "FKBP15 WILD-TYPE" "FKBP15 WILD-TYPE" "FKBP15 WILD-TYPE" 
      TCGA-IB-8126       TCGA-IB-8127       TCGA-IB-A5SS       TCGA-IB-A6UG 
"FKBP15 WILD-TYPE" "FKBP15 WILD-TYPE" "FKBP15 WILD-TYPE" "FKBP15 WILD-TYPE" 
      TCGA-LB-A7SX       TCGA-OE-A75W 
"FKBP15 WILD-TYPE" "FKBP15 WILD-TYPE" 
                  vv
clus               R0 R1 RX
  FKBP15 MUTATED    4  2  0
  FKBP15 WILD-TYPE 38 22  2
D212V11, multiclass
    clus
vv   FKBP15 MUTATED FKBP15 WILD-TYPE
  R0              4               38
  R1              2               22
  RX              0                2
D212V12, continuous

Clustering(213) Variable = CAMTA1 MUTATION ANALYSIS
D213V1, survival
                  sevent
clus2               0  1
  CAMTA1 MUTATED    5  4
  CAMTA1 WILD-TYPE 35 25
  CAMTA1 MUTATED CAMTA1 WILD-TYPE 
               9               60 
  CAMTA1 MUTATED CAMTA1 WILD-TYPE 
               4               25 
$`CAMTA1 MUTATED`
TCGA-H6-8124 TCGA-H8-A6C1 TCGA-HZ-7919 TCGA-HZ-8317 TCGA-IB-7646 TCGA-IB-7651 
       12.89        13.02         0.66         0.53         4.77        19.82 
TCGA-IB-7890 TCGA-IB-7897 TCGA-PZ-A5RE 
       19.66        15.98         8.12 

$`CAMTA1 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P5 TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR 
        0.13        11.93        12.66         2.47         0.03         5.46 
TCGA-FZ-5920 TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-A45N TCGA-HZ-7289 TCGA-HZ-7918 
        2.01        36.20        20.81         7.66         7.89         0.92 
TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8001 
        0.13         0.26        12.13        11.87         0.26         0.62 
TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8636 TCGA-HZ-8638 
        0.79         0.69         3.95         0.92         0.16         2.99 
TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7645 
        0.76         0.95         6.38         1.51        11.41        49.38 
TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 
       21.90        15.35        15.65        27.98         4.04         3.62 
TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-8126 TCGA-IB-8127 
       43.79        15.81        16.04         3.85         0.56        17.16 
TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG 
       10.82         9.86         7.20        15.12         0.26         1.35 
TCGA-LB-A7SX TCGA-OE-A75W TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
        4.18         3.62        13.68        16.80        14.14        18.67 

  CAMTA1 MUTATED CAMTA1 WILD-TYPE 
            0.53             0.03 
  CAMTA1 MUTATED CAMTA1 WILD-TYPE 
           19.82            49.38 
  CAMTA1 MUTATED CAMTA1 WILD-TYPE 
           12.89             7.15 
[1] "0.5 - 19.8 (12.9)" "0.0 - 49.4 (7.2)" 
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
"CAMTA1 WILD-TYPE" "CAMTA1 WILD-TYPE" "CAMTA1 WILD-TYPE" "CAMTA1 WILD-TYPE" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"CAMTA1 WILD-TYPE" "CAMTA1 WILD-TYPE" "CAMTA1 WILD-TYPE" "CAMTA1 WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
"CAMTA1 WILD-TYPE" "CAMTA1 WILD-TYPE" "CAMTA1 WILD-TYPE" "CAMTA1 WILD-TYPE" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"CAMTA1 WILD-TYPE" "CAMTA1 WILD-TYPE" "CAMTA1 WILD-TYPE"   "CAMTA1 MUTATED" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
"CAMTA1 WILD-TYPE"   "CAMTA1 MUTATED" "CAMTA1 WILD-TYPE" "CAMTA1 WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
  "CAMTA1 MUTATED" "CAMTA1 WILD-TYPE" "CAMTA1 WILD-TYPE" "CAMTA1 WILD-TYPE" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"CAMTA1 WILD-TYPE" "CAMTA1 WILD-TYPE" "CAMTA1 WILD-TYPE" "CAMTA1 WILD-TYPE" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
"CAMTA1 WILD-TYPE" "CAMTA1 WILD-TYPE" "CAMTA1 WILD-TYPE"   "CAMTA1 MUTATED" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
"CAMTA1 WILD-TYPE" "CAMTA1 WILD-TYPE" "CAMTA1 WILD-TYPE" "CAMTA1 WILD-TYPE" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
"CAMTA1 WILD-TYPE" "CAMTA1 WILD-TYPE" "CAMTA1 WILD-TYPE" "CAMTA1 WILD-TYPE" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
  "CAMTA1 MUTATED" "CAMTA1 WILD-TYPE" "CAMTA1 WILD-TYPE"   "CAMTA1 MUTATED" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
"CAMTA1 WILD-TYPE" "CAMTA1 WILD-TYPE" "CAMTA1 WILD-TYPE" "CAMTA1 WILD-TYPE" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
"CAMTA1 WILD-TYPE" "CAMTA1 WILD-TYPE"   "CAMTA1 MUTATED" "CAMTA1 WILD-TYPE" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
"CAMTA1 WILD-TYPE"   "CAMTA1 MUTATED" "CAMTA1 WILD-TYPE" "CAMTA1 WILD-TYPE" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"CAMTA1 WILD-TYPE" "CAMTA1 WILD-TYPE" "CAMTA1 WILD-TYPE" "CAMTA1 WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"CAMTA1 WILD-TYPE" "CAMTA1 WILD-TYPE" "CAMTA1 WILD-TYPE" "CAMTA1 WILD-TYPE" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
  "CAMTA1 MUTATED" "CAMTA1 WILD-TYPE" "CAMTA1 WILD-TYPE" "CAMTA1 WILD-TYPE" 
      TCGA-US-A77J 
"CAMTA1 WILD-TYPE" 
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
"CAMTA1 WILD-TYPE" "CAMTA1 WILD-TYPE" "CAMTA1 WILD-TYPE" "CAMTA1 WILD-TYPE" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"CAMTA1 WILD-TYPE" "CAMTA1 WILD-TYPE" "CAMTA1 WILD-TYPE" "CAMTA1 WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
"CAMTA1 WILD-TYPE" "CAMTA1 WILD-TYPE" "CAMTA1 WILD-TYPE" "CAMTA1 WILD-TYPE" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"CAMTA1 WILD-TYPE" "CAMTA1 WILD-TYPE" "CAMTA1 WILD-TYPE"   "CAMTA1 MUTATED" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
"CAMTA1 WILD-TYPE"   "CAMTA1 MUTATED" "CAMTA1 WILD-TYPE" "CAMTA1 WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
  "CAMTA1 MUTATED" "CAMTA1 WILD-TYPE" "CAMTA1 WILD-TYPE" "CAMTA1 WILD-TYPE" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"CAMTA1 WILD-TYPE" "CAMTA1 WILD-TYPE" "CAMTA1 WILD-TYPE" "CAMTA1 WILD-TYPE" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
"CAMTA1 WILD-TYPE" "CAMTA1 WILD-TYPE" "CAMTA1 WILD-TYPE"   "CAMTA1 MUTATED" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
"CAMTA1 WILD-TYPE" "CAMTA1 WILD-TYPE" "CAMTA1 WILD-TYPE" "CAMTA1 WILD-TYPE" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
"CAMTA1 WILD-TYPE" "CAMTA1 WILD-TYPE" "CAMTA1 WILD-TYPE" "CAMTA1 WILD-TYPE" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
  "CAMTA1 MUTATED" "CAMTA1 WILD-TYPE" "CAMTA1 WILD-TYPE"   "CAMTA1 MUTATED" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
"CAMTA1 WILD-TYPE" "CAMTA1 WILD-TYPE" "CAMTA1 WILD-TYPE" "CAMTA1 WILD-TYPE" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
"CAMTA1 WILD-TYPE" "CAMTA1 WILD-TYPE"   "CAMTA1 MUTATED" "CAMTA1 WILD-TYPE" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
"CAMTA1 WILD-TYPE"   "CAMTA1 MUTATED" "CAMTA1 WILD-TYPE" "CAMTA1 WILD-TYPE" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"CAMTA1 WILD-TYPE" "CAMTA1 WILD-TYPE" "CAMTA1 WILD-TYPE" "CAMTA1 WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"CAMTA1 WILD-TYPE" "CAMTA1 WILD-TYPE" "CAMTA1 WILD-TYPE" "CAMTA1 WILD-TYPE" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
  "CAMTA1 MUTATED" "CAMTA1 WILD-TYPE" "CAMTA1 WILD-TYPE" "CAMTA1 WILD-TYPE" 
      TCGA-US-A77J 
"CAMTA1 WILD-TYPE" 
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
"CAMTA1 WILD-TYPE" "CAMTA1 WILD-TYPE" "CAMTA1 WILD-TYPE" "CAMTA1 WILD-TYPE" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"CAMTA1 WILD-TYPE" "CAMTA1 WILD-TYPE" "CAMTA1 WILD-TYPE" "CAMTA1 WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
"CAMTA1 WILD-TYPE" "CAMTA1 WILD-TYPE" "CAMTA1 WILD-TYPE" "CAMTA1 WILD-TYPE" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"CAMTA1 WILD-TYPE" "CAMTA1 WILD-TYPE" "CAMTA1 WILD-TYPE"   "CAMTA1 MUTATED" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
"CAMTA1 WILD-TYPE"   "CAMTA1 MUTATED" "CAMTA1 WILD-TYPE" "CAMTA1 WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
  "CAMTA1 MUTATED" "CAMTA1 WILD-TYPE" "CAMTA1 WILD-TYPE" "CAMTA1 WILD-TYPE" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"CAMTA1 WILD-TYPE" "CAMTA1 WILD-TYPE" "CAMTA1 WILD-TYPE" "CAMTA1 WILD-TYPE" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
"CAMTA1 WILD-TYPE" "CAMTA1 WILD-TYPE" "CAMTA1 WILD-TYPE"   "CAMTA1 MUTATED" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
"CAMTA1 WILD-TYPE" "CAMTA1 WILD-TYPE" "CAMTA1 WILD-TYPE" "CAMTA1 WILD-TYPE" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
"CAMTA1 WILD-TYPE" "CAMTA1 WILD-TYPE" "CAMTA1 WILD-TYPE" "CAMTA1 WILD-TYPE" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
  "CAMTA1 MUTATED" "CAMTA1 WILD-TYPE" "CAMTA1 WILD-TYPE"   "CAMTA1 MUTATED" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
"CAMTA1 WILD-TYPE" "CAMTA1 WILD-TYPE" "CAMTA1 WILD-TYPE" "CAMTA1 WILD-TYPE" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
"CAMTA1 WILD-TYPE" "CAMTA1 WILD-TYPE"   "CAMTA1 MUTATED" "CAMTA1 WILD-TYPE" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
"CAMTA1 WILD-TYPE"   "CAMTA1 MUTATED" "CAMTA1 WILD-TYPE" "CAMTA1 WILD-TYPE" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"CAMTA1 WILD-TYPE" "CAMTA1 WILD-TYPE" "CAMTA1 WILD-TYPE" "CAMTA1 WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"CAMTA1 WILD-TYPE" "CAMTA1 WILD-TYPE" "CAMTA1 WILD-TYPE" "CAMTA1 WILD-TYPE" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
  "CAMTA1 MUTATED" "CAMTA1 WILD-TYPE" "CAMTA1 WILD-TYPE" "CAMTA1 WILD-TYPE" 
      TCGA-US-A77J 
"CAMTA1 WILD-TYPE" 
[1] "hr=" "1"  
D213V2, continuous
                  vv
clus               STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  CAMTA1 MUTATED          0        1         1         7         0        0
  CAMTA1 WILD-TYPE        1        3        10        44         2        3
D213V3, multiclass
                  vv
clus               T1+T2 T3+T4
  CAMTA1 MUTATED       1     8
  CAMTA1 WILD-TYPE     5    58
D213V4, multiclass
       clus
vv      CAMTA1 MUTATED CAMTA1 WILD-TYPE
  T1+T2              1                5
  T3+T4              8               58
D213V5, binary
                  cls
clus                0  1
  CAMTA1 MUTATED    2  7
  CAMTA1 WILD-TYPE 15 47
[1] "tbl2"
                  cls
clus               [,1] [,2]
  CAMTA1 MUTATED      2    7
  CAMTA1 WILD-TYPE   15   47
   clus
vv  CAMTA1 MUTATED CAMTA1 WILD-TYPE
  0              2               15
  1              7               47
                  vv
clus               M0 M1 MX
  CAMTA1 MUTATED    6  0  3
  CAMTA1 WILD-TYPE 33  3 27
D213V6, multiclass
    clus
vv   CAMTA1 MUTATED CAMTA1 WILD-TYPE
  M0              6               33
  M1              0                3
  MX              3               27
D213V7, binary
                  cls
clus                0  1
  CAMTA1 MUTATED    6  3
  CAMTA1 WILD-TYPE 30 33
[1] "tbl2"
                  cls
clus               [,1] [,2]
  CAMTA1 MUTATED      6    3
  CAMTA1 WILD-TYPE   30   33
        clus
vv       CAMTA1 MUTATED CAMTA1 WILD-TYPE
  FEMALE              6               30
  MALE                3               33
                  vv
clus               PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  CAMTA1 MUTATED                                     8
  CAMTA1 WILD-TYPE                                  57
                  vv
clus               PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  CAMTA1 MUTATED                                       1
  CAMTA1 WILD-TYPE                                     3
                  vv
clus               PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  CAMTA1 MUTATED                                                  0
  CAMTA1 WILD-TYPE                                                2
D213V8, multiclass
                                                  clus
vv                                                 CAMTA1 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                           8
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                         1
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA              0
                                                  clus
vv                                                 CAMTA1 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                            57
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                           3
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                2
D213V9, continuous
D213V10, continuous
                  vv
clus               R0 R1 RX
  CAMTA1 MUTATED    5  3  0
  CAMTA1 WILD-TYPE 37 21  2
D213V11, multiclass
    clus
vv   CAMTA1 MUTATED CAMTA1 WILD-TYPE
  R0              5               37
  R1              3               21
  RX              0                2
D213V12, continuous

Clustering(214) Variable = OXR1 MUTATION ANALYSIS
D214V1, survival
                sevent
clus2             0  1
  OXR1 MUTATED    4  1
  OXR1 WILD-TYPE 36 28
  OXR1 MUTATED OXR1 WILD-TYPE 
             5             64 
  OXR1 MUTATED OXR1 WILD-TYPE 
             1             28 
$`OXR1 MUTATED`
TCGA-FB-A545 TCGA-HZ-7289 TCGA-HZ-7922 TCGA-HZ-8636 TCGA-IB-7887 
       12.66         7.89         0.13         0.16         3.62 

$`OXR1 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P5 TCGA-FB-A4P6 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR TCGA-FZ-5920 
        0.13        11.93         2.47         0.03         5.46         2.01 
TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7918 
       36.20        20.81        12.89         7.66        13.02         0.92 
TCGA-HZ-7919 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8001 
        0.66         0.26        12.13        11.87         0.26         0.62 
TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8638 
        0.79         0.69         3.95         0.92         0.53         2.99 
TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7645 
        0.76         0.95         6.38         1.51        11.41        49.38 
TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7651 TCGA-IB-7652 TCGA-IB-7885 
        4.77        21.90        15.35        19.82        15.65        27.98 
TCGA-IB-7886 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-7893 
        4.04        43.79        15.81        19.66        16.04         3.85 
TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ 
       15.98         0.56        17.16        10.82         9.86         7.20 
TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W TCGA-PZ-A5RE 
       15.12         0.26         1.35         4.18         3.62         8.12 
TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
       13.68        16.80        14.14        18.67 

  OXR1 MUTATED OXR1 WILD-TYPE 
          0.13           0.03 
  OXR1 MUTATED OXR1 WILD-TYPE 
         12.66          49.38 
  OXR1 MUTATED OXR1 WILD-TYPE 
          3.62           7.89 
[1] "0.1 - 12.7 (3.6)" "0.0 - 49.4 (7.9)"
    TCGA-F2-6879     TCGA-F2-6880     TCGA-F2-7273     TCGA-F2-7276 
"OXR1 WILD-TYPE" "OXR1 WILD-TYPE" "OXR1 WILD-TYPE" "OXR1 WILD-TYPE" 
    TCGA-F2-A44G     TCGA-F2-A44H     TCGA-FB-A4P5     TCGA-FB-A4P6 
"OXR1 WILD-TYPE" "OXR1 WILD-TYPE" "OXR1 WILD-TYPE" "OXR1 WILD-TYPE" 
    TCGA-FB-A545     TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-FB-A7DR 
  "OXR1 MUTATED" "OXR1 WILD-TYPE" "OXR1 WILD-TYPE" "OXR1 WILD-TYPE" 
    TCGA-FZ-5920     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-H6-8124 
"OXR1 WILD-TYPE" "OXR1 WILD-TYPE" "OXR1 WILD-TYPE" "OXR1 WILD-TYPE" 
    TCGA-H6-A45N     TCGA-H8-A6C1     TCGA-HZ-7289     TCGA-HZ-7918 
"OXR1 WILD-TYPE" "OXR1 WILD-TYPE"   "OXR1 MUTATED" "OXR1 WILD-TYPE" 
    TCGA-HZ-7919     TCGA-HZ-7922     TCGA-HZ-7923     TCGA-HZ-7924 
"OXR1 WILD-TYPE"   "OXR1 MUTATED" "OXR1 WILD-TYPE" "OXR1 WILD-TYPE" 
    TCGA-HZ-7925     TCGA-HZ-7926     TCGA-HZ-8001     TCGA-HZ-8002 
"OXR1 WILD-TYPE" "OXR1 WILD-TYPE" "OXR1 WILD-TYPE" "OXR1 WILD-TYPE" 
    TCGA-HZ-8003     TCGA-HZ-8005     TCGA-HZ-8315     TCGA-HZ-8317 
"OXR1 WILD-TYPE" "OXR1 WILD-TYPE" "OXR1 WILD-TYPE" "OXR1 WILD-TYPE" 
    TCGA-HZ-8636     TCGA-HZ-8638     TCGA-HZ-A49G     TCGA-HZ-A49H 
  "OXR1 MUTATED" "OXR1 WILD-TYPE" "OXR1 WILD-TYPE" "OXR1 WILD-TYPE" 
    TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-IB-7644     TCGA-IB-7645 
"OXR1 WILD-TYPE" "OXR1 WILD-TYPE" "OXR1 WILD-TYPE" "OXR1 WILD-TYPE" 
    TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7651 
"OXR1 WILD-TYPE" "OXR1 WILD-TYPE" "OXR1 WILD-TYPE" "OXR1 WILD-TYPE" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887 
"OXR1 WILD-TYPE" "OXR1 WILD-TYPE" "OXR1 WILD-TYPE"   "OXR1 MUTATED" 
    TCGA-IB-7888     TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891 
"OXR1 WILD-TYPE" "OXR1 WILD-TYPE" "OXR1 WILD-TYPE" "OXR1 WILD-TYPE" 
    TCGA-IB-7893     TCGA-IB-7897     TCGA-IB-8126     TCGA-IB-8127 
"OXR1 WILD-TYPE" "OXR1 WILD-TYPE" "OXR1 WILD-TYPE" "OXR1 WILD-TYPE" 
    TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS 
"OXR1 WILD-TYPE" "OXR1 WILD-TYPE" "OXR1 WILD-TYPE" "OXR1 WILD-TYPE" 
    TCGA-IB-A5ST     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
"OXR1 WILD-TYPE" "OXR1 WILD-TYPE" "OXR1 WILD-TYPE" "OXR1 WILD-TYPE" 
    TCGA-PZ-A5RE     TCGA-Q3-A5QY     TCGA-US-A779     TCGA-US-A77E 
"OXR1 WILD-TYPE" "OXR1 WILD-TYPE" "OXR1 WILD-TYPE" "OXR1 WILD-TYPE" 
    TCGA-US-A77J 
"OXR1 WILD-TYPE" 
    TCGA-F2-6879     TCGA-F2-6880     TCGA-F2-7273     TCGA-F2-7276 
"OXR1 WILD-TYPE" "OXR1 WILD-TYPE" "OXR1 WILD-TYPE" "OXR1 WILD-TYPE" 
    TCGA-F2-A44G     TCGA-F2-A44H     TCGA-FB-A4P5     TCGA-FB-A4P6 
"OXR1 WILD-TYPE" "OXR1 WILD-TYPE" "OXR1 WILD-TYPE" "OXR1 WILD-TYPE" 
    TCGA-FB-A545     TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-FB-A7DR 
  "OXR1 MUTATED" "OXR1 WILD-TYPE" "OXR1 WILD-TYPE" "OXR1 WILD-TYPE" 
    TCGA-FZ-5920     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-H6-8124 
"OXR1 WILD-TYPE" "OXR1 WILD-TYPE" "OXR1 WILD-TYPE" "OXR1 WILD-TYPE" 
    TCGA-H6-A45N     TCGA-H8-A6C1     TCGA-HZ-7289     TCGA-HZ-7918 
"OXR1 WILD-TYPE" "OXR1 WILD-TYPE"   "OXR1 MUTATED" "OXR1 WILD-TYPE" 
    TCGA-HZ-7919     TCGA-HZ-7922     TCGA-HZ-7923     TCGA-HZ-7924 
"OXR1 WILD-TYPE"   "OXR1 MUTATED" "OXR1 WILD-TYPE" "OXR1 WILD-TYPE" 
    TCGA-HZ-7925     TCGA-HZ-7926     TCGA-HZ-8001     TCGA-HZ-8002 
"OXR1 WILD-TYPE" "OXR1 WILD-TYPE" "OXR1 WILD-TYPE" "OXR1 WILD-TYPE" 
    TCGA-HZ-8003     TCGA-HZ-8005     TCGA-HZ-8315     TCGA-HZ-8317 
"OXR1 WILD-TYPE" "OXR1 WILD-TYPE" "OXR1 WILD-TYPE" "OXR1 WILD-TYPE" 
    TCGA-HZ-8636     TCGA-HZ-8638     TCGA-HZ-A49G     TCGA-HZ-A49H 
  "OXR1 MUTATED" "OXR1 WILD-TYPE" "OXR1 WILD-TYPE" "OXR1 WILD-TYPE" 
    TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-IB-7644     TCGA-IB-7645 
"OXR1 WILD-TYPE" "OXR1 WILD-TYPE" "OXR1 WILD-TYPE" "OXR1 WILD-TYPE" 
    TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7651 
"OXR1 WILD-TYPE" "OXR1 WILD-TYPE" "OXR1 WILD-TYPE" "OXR1 WILD-TYPE" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887 
"OXR1 WILD-TYPE" "OXR1 WILD-TYPE" "OXR1 WILD-TYPE"   "OXR1 MUTATED" 
    TCGA-IB-7888     TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891 
"OXR1 WILD-TYPE" "OXR1 WILD-TYPE" "OXR1 WILD-TYPE" "OXR1 WILD-TYPE" 
    TCGA-IB-7893     TCGA-IB-7897     TCGA-IB-8126     TCGA-IB-8127 
"OXR1 WILD-TYPE" "OXR1 WILD-TYPE" "OXR1 WILD-TYPE" "OXR1 WILD-TYPE" 
    TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS 
"OXR1 WILD-TYPE" "OXR1 WILD-TYPE" "OXR1 WILD-TYPE" "OXR1 WILD-TYPE" 
    TCGA-IB-A5ST     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
"OXR1 WILD-TYPE" "OXR1 WILD-TYPE" "OXR1 WILD-TYPE" "OXR1 WILD-TYPE" 
    TCGA-PZ-A5RE     TCGA-Q3-A5QY     TCGA-US-A779     TCGA-US-A77E 
"OXR1 WILD-TYPE" "OXR1 WILD-TYPE" "OXR1 WILD-TYPE" "OXR1 WILD-TYPE" 
    TCGA-US-A77J 
"OXR1 WILD-TYPE" 
    TCGA-F2-6879     TCGA-F2-6880     TCGA-F2-7273     TCGA-F2-7276 
"OXR1 WILD-TYPE" "OXR1 WILD-TYPE" "OXR1 WILD-TYPE" "OXR1 WILD-TYPE" 
    TCGA-F2-A44G     TCGA-F2-A44H     TCGA-FB-A4P5     TCGA-FB-A4P6 
"OXR1 WILD-TYPE" "OXR1 WILD-TYPE" "OXR1 WILD-TYPE" "OXR1 WILD-TYPE" 
    TCGA-FB-A545     TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-FB-A7DR 
  "OXR1 MUTATED" "OXR1 WILD-TYPE" "OXR1 WILD-TYPE" "OXR1 WILD-TYPE" 
    TCGA-FZ-5920     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-H6-8124 
"OXR1 WILD-TYPE" "OXR1 WILD-TYPE" "OXR1 WILD-TYPE" "OXR1 WILD-TYPE" 
    TCGA-H6-A45N     TCGA-H8-A6C1     TCGA-HZ-7289     TCGA-HZ-7918 
"OXR1 WILD-TYPE" "OXR1 WILD-TYPE"   "OXR1 MUTATED" "OXR1 WILD-TYPE" 
    TCGA-HZ-7919     TCGA-HZ-7922     TCGA-HZ-7923     TCGA-HZ-7924 
"OXR1 WILD-TYPE"   "OXR1 MUTATED" "OXR1 WILD-TYPE" "OXR1 WILD-TYPE" 
    TCGA-HZ-7925     TCGA-HZ-7926     TCGA-HZ-8001     TCGA-HZ-8002 
"OXR1 WILD-TYPE" "OXR1 WILD-TYPE" "OXR1 WILD-TYPE" "OXR1 WILD-TYPE" 
    TCGA-HZ-8003     TCGA-HZ-8005     TCGA-HZ-8315     TCGA-HZ-8317 
"OXR1 WILD-TYPE" "OXR1 WILD-TYPE" "OXR1 WILD-TYPE" "OXR1 WILD-TYPE" 
    TCGA-HZ-8636     TCGA-HZ-8638     TCGA-HZ-A49G     TCGA-HZ-A49H 
  "OXR1 MUTATED" "OXR1 WILD-TYPE" "OXR1 WILD-TYPE" "OXR1 WILD-TYPE" 
    TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-IB-7644     TCGA-IB-7645 
"OXR1 WILD-TYPE" "OXR1 WILD-TYPE" "OXR1 WILD-TYPE" "OXR1 WILD-TYPE" 
    TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7651 
"OXR1 WILD-TYPE" "OXR1 WILD-TYPE" "OXR1 WILD-TYPE" "OXR1 WILD-TYPE" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887 
"OXR1 WILD-TYPE" "OXR1 WILD-TYPE" "OXR1 WILD-TYPE"   "OXR1 MUTATED" 
    TCGA-IB-7888     TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891 
"OXR1 WILD-TYPE" "OXR1 WILD-TYPE" "OXR1 WILD-TYPE" "OXR1 WILD-TYPE" 
    TCGA-IB-7893     TCGA-IB-7897     TCGA-IB-8126     TCGA-IB-8127 
"OXR1 WILD-TYPE" "OXR1 WILD-TYPE" "OXR1 WILD-TYPE" "OXR1 WILD-TYPE" 
    TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS 
"OXR1 WILD-TYPE" "OXR1 WILD-TYPE" "OXR1 WILD-TYPE" "OXR1 WILD-TYPE" 
    TCGA-IB-A5ST     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
"OXR1 WILD-TYPE" "OXR1 WILD-TYPE" "OXR1 WILD-TYPE" "OXR1 WILD-TYPE" 
    TCGA-PZ-A5RE     TCGA-Q3-A5QY     TCGA-US-A779     TCGA-US-A77E 
"OXR1 WILD-TYPE" "OXR1 WILD-TYPE" "OXR1 WILD-TYPE" "OXR1 WILD-TYPE" 
    TCGA-US-A77J 
"OXR1 WILD-TYPE" 
[1] "hr=" "1.3"
D214V2, continuous
                vv
clus             STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  OXR1 MUTATED          0        0         0         4         0        1
  OXR1 WILD-TYPE        1        4        11        47         2        2
D214V3, multiclass
                vv
clus             T1+T2 T3+T4
  OXR1 MUTATED       0     5
  OXR1 WILD-TYPE     6    61
D214V4, multiclass
       clus
vv      OXR1 MUTATED OXR1 WILD-TYPE
  T1+T2            0              6
  T3+T4            5             61
D214V5, binary
                cls
clus              0  1
  OXR1 MUTATED    1  4
  OXR1 WILD-TYPE 16 50
[1] "tbl2"
                cls
clus             [,1] [,2]
  OXR1 MUTATED      1    4
  OXR1 WILD-TYPE   16   50
   clus
vv  OXR1 MUTATED OXR1 WILD-TYPE
  0            1             16
  1            4             50
                vv
clus             M0 M1 MX
  OXR1 MUTATED    2  1  2
  OXR1 WILD-TYPE 37  2 28
D214V6, multiclass
    clus
vv   OXR1 MUTATED OXR1 WILD-TYPE
  M0            2             37
  M1            1              2
  MX            2             28
D214V7, binary
                cls
clus              0  1
  OXR1 MUTATED    4  1
  OXR1 WILD-TYPE 32 35
[1] "tbl2"
                cls
clus             [,1] [,2]
  OXR1 MUTATED      4    1
  OXR1 WILD-TYPE   32   35
        clus
vv       OXR1 MUTATED OXR1 WILD-TYPE
  FEMALE            4             32
  MALE              1             35
                vv
clus             PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  OXR1 MUTATED                                     4
  OXR1 WILD-TYPE                                  61
                vv
clus             PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  OXR1 MUTATED                                       1
  OXR1 WILD-TYPE                                     3
                vv
clus             PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  OXR1 MUTATED                                                  0
  OXR1 WILD-TYPE                                                2
D214V8, multiclass
                                                  clus
vv                                                 OXR1 MUTATED OXR1 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                         4             61
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                       1              3
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA            0              2
D214V9, continuous
[1] "Remove cluster labels:" "OXR1 MUTATED"          
clus
  OXR1 MUTATED OXR1 WILD-TYPE 
             1             21 
    TCGA-F2-6880     TCGA-FB-A4P5     TCGA-FB-A4P6     TCGA-FB-A5VM 
"OXR1 WILD-TYPE" "OXR1 WILD-TYPE" "OXR1 WILD-TYPE" "OXR1 WILD-TYPE" 
    TCGA-FB-A78T     TCGA-FB-A7DR     TCGA-H6-8124     TCGA-H6-A45N 
"OXR1 WILD-TYPE" "OXR1 WILD-TYPE" "OXR1 WILD-TYPE" "OXR1 WILD-TYPE" 
    TCGA-H8-A6C1     TCGA-IB-7644     TCGA-IB-7649     TCGA-IB-7651 
"OXR1 WILD-TYPE" "OXR1 WILD-TYPE" "OXR1 WILD-TYPE" "OXR1 WILD-TYPE" 
    TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7891     TCGA-IB-8126 
"OXR1 WILD-TYPE" "OXR1 WILD-TYPE" "OXR1 WILD-TYPE" "OXR1 WILD-TYPE" 
    TCGA-IB-8127     TCGA-IB-A5SS     TCGA-IB-A6UG     TCGA-LB-A7SX 
"OXR1 WILD-TYPE" "OXR1 WILD-TYPE" "OXR1 WILD-TYPE" "OXR1 WILD-TYPE" 
    TCGA-OE-A75W 
"OXR1 WILD-TYPE" 
D214V10, continuous
                vv
clus             R0 R1 RX
  OXR1 MUTATED    1  2  1
  OXR1 WILD-TYPE 41 22  1
D214V11, multiclass
    clus
vv   OXR1 MUTATED OXR1 WILD-TYPE
  R0            1             41
  R1            2             22
  RX            1              1
D214V12, continuous

Clustering(215) Variable = ZNF184 MUTATION ANALYSIS
D215V1, survival
                  sevent
clus2               0  1
  ZNF184 MUTATED    5  3
  ZNF184 WILD-TYPE 35 26
  ZNF184 MUTATED ZNF184 WILD-TYPE 
               8               61 
  ZNF184 MUTATED ZNF184 WILD-TYPE 
               3               26 
$`ZNF184 MUTATED`
TCGA-F2-6880 TCGA-HZ-7923 TCGA-HZ-8003 TCGA-HZ-8317 TCGA-HZ-8636 TCGA-IB-7651 
        9.70         0.26         0.69         0.53         0.16        19.82 
TCGA-IB-A6UG TCGA-US-A779 
        1.35        16.80 

$`ZNF184 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H TCGA-FB-A4P5 
       10.98        11.84         7.10         5.03        19.27         0.13 
TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR TCGA-FZ-5920 
       11.93        12.66         2.47         0.03         5.46         2.01 
TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7289 
       36.20        20.81        12.89         7.66        13.02         7.89 
TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 
        0.92         0.66         0.13        12.13        11.87         0.26 
TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8638 TCGA-HZ-A49G 
        0.62         0.79         3.95         0.92         2.99         0.76 
TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7646 
        0.95         6.38         1.51        11.41        49.38         4.77 
TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 
       21.90        15.35        15.65        27.98         4.04         3.62 
TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-7897 
       43.79        15.81        19.66        16.04         3.85        15.98 
TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS 
        0.56        17.16        10.82         9.86         7.20        15.12 
TCGA-IB-A5ST TCGA-LB-A7SX TCGA-OE-A75W TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A77E 
        0.26         4.18         3.62         8.12        13.68        14.14 
TCGA-US-A77J 
       18.67 

  ZNF184 MUTATED ZNF184 WILD-TYPE 
            0.16             0.03 
  ZNF184 MUTATED ZNF184 WILD-TYPE 
           19.82            49.38 
  ZNF184 MUTATED ZNF184 WILD-TYPE 
            1.02             7.89 
[1] "0.2 - 19.8 (1.0)" "0.0 - 49.4 (7.9)"
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
"ZNF184 WILD-TYPE"   "ZNF184 MUTATED" "ZNF184 WILD-TYPE" "ZNF184 WILD-TYPE" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"ZNF184 WILD-TYPE" "ZNF184 WILD-TYPE" "ZNF184 WILD-TYPE" "ZNF184 WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
"ZNF184 WILD-TYPE" "ZNF184 WILD-TYPE" "ZNF184 WILD-TYPE" "ZNF184 WILD-TYPE" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"ZNF184 WILD-TYPE" "ZNF184 WILD-TYPE" "ZNF184 WILD-TYPE" "ZNF184 WILD-TYPE" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
"ZNF184 WILD-TYPE" "ZNF184 WILD-TYPE" "ZNF184 WILD-TYPE" "ZNF184 WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
"ZNF184 WILD-TYPE" "ZNF184 WILD-TYPE"   "ZNF184 MUTATED" "ZNF184 WILD-TYPE" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"ZNF184 WILD-TYPE" "ZNF184 WILD-TYPE" "ZNF184 WILD-TYPE" "ZNF184 WILD-TYPE" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
  "ZNF184 MUTATED" "ZNF184 WILD-TYPE" "ZNF184 WILD-TYPE"   "ZNF184 MUTATED" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
  "ZNF184 MUTATED" "ZNF184 WILD-TYPE" "ZNF184 WILD-TYPE" "ZNF184 WILD-TYPE" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
"ZNF184 WILD-TYPE" "ZNF184 WILD-TYPE" "ZNF184 WILD-TYPE" "ZNF184 WILD-TYPE" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
"ZNF184 WILD-TYPE" "ZNF184 WILD-TYPE" "ZNF184 WILD-TYPE"   "ZNF184 MUTATED" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
"ZNF184 WILD-TYPE" "ZNF184 WILD-TYPE" "ZNF184 WILD-TYPE" "ZNF184 WILD-TYPE" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
"ZNF184 WILD-TYPE" "ZNF184 WILD-TYPE" "ZNF184 WILD-TYPE" "ZNF184 WILD-TYPE" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
"ZNF184 WILD-TYPE" "ZNF184 WILD-TYPE" "ZNF184 WILD-TYPE" "ZNF184 WILD-TYPE" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"ZNF184 WILD-TYPE" "ZNF184 WILD-TYPE" "ZNF184 WILD-TYPE" "ZNF184 WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"ZNF184 WILD-TYPE"   "ZNF184 MUTATED" "ZNF184 WILD-TYPE" "ZNF184 WILD-TYPE" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
"ZNF184 WILD-TYPE" "ZNF184 WILD-TYPE"   "ZNF184 MUTATED" "ZNF184 WILD-TYPE" 
      TCGA-US-A77J 
"ZNF184 WILD-TYPE" 
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
"ZNF184 WILD-TYPE"   "ZNF184 MUTATED" "ZNF184 WILD-TYPE" "ZNF184 WILD-TYPE" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"ZNF184 WILD-TYPE" "ZNF184 WILD-TYPE" "ZNF184 WILD-TYPE" "ZNF184 WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
"ZNF184 WILD-TYPE" "ZNF184 WILD-TYPE" "ZNF184 WILD-TYPE" "ZNF184 WILD-TYPE" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"ZNF184 WILD-TYPE" "ZNF184 WILD-TYPE" "ZNF184 WILD-TYPE" "ZNF184 WILD-TYPE" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
"ZNF184 WILD-TYPE" "ZNF184 WILD-TYPE" "ZNF184 WILD-TYPE" "ZNF184 WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
"ZNF184 WILD-TYPE" "ZNF184 WILD-TYPE"   "ZNF184 MUTATED" "ZNF184 WILD-TYPE" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"ZNF184 WILD-TYPE" "ZNF184 WILD-TYPE" "ZNF184 WILD-TYPE" "ZNF184 WILD-TYPE" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
  "ZNF184 MUTATED" "ZNF184 WILD-TYPE" "ZNF184 WILD-TYPE"   "ZNF184 MUTATED" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
  "ZNF184 MUTATED" "ZNF184 WILD-TYPE" "ZNF184 WILD-TYPE" "ZNF184 WILD-TYPE" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
"ZNF184 WILD-TYPE" "ZNF184 WILD-TYPE" "ZNF184 WILD-TYPE" "ZNF184 WILD-TYPE" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
"ZNF184 WILD-TYPE" "ZNF184 WILD-TYPE" "ZNF184 WILD-TYPE"   "ZNF184 MUTATED" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
"ZNF184 WILD-TYPE" "ZNF184 WILD-TYPE" "ZNF184 WILD-TYPE" "ZNF184 WILD-TYPE" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
"ZNF184 WILD-TYPE" "ZNF184 WILD-TYPE" "ZNF184 WILD-TYPE" "ZNF184 WILD-TYPE" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
"ZNF184 WILD-TYPE" "ZNF184 WILD-TYPE" "ZNF184 WILD-TYPE" "ZNF184 WILD-TYPE" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"ZNF184 WILD-TYPE" "ZNF184 WILD-TYPE" "ZNF184 WILD-TYPE" "ZNF184 WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"ZNF184 WILD-TYPE"   "ZNF184 MUTATED" "ZNF184 WILD-TYPE" "ZNF184 WILD-TYPE" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
"ZNF184 WILD-TYPE" "ZNF184 WILD-TYPE"   "ZNF184 MUTATED" "ZNF184 WILD-TYPE" 
      TCGA-US-A77J 
"ZNF184 WILD-TYPE" 
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
"ZNF184 WILD-TYPE"   "ZNF184 MUTATED" "ZNF184 WILD-TYPE" "ZNF184 WILD-TYPE" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"ZNF184 WILD-TYPE" "ZNF184 WILD-TYPE" "ZNF184 WILD-TYPE" "ZNF184 WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
"ZNF184 WILD-TYPE" "ZNF184 WILD-TYPE" "ZNF184 WILD-TYPE" "ZNF184 WILD-TYPE" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"ZNF184 WILD-TYPE" "ZNF184 WILD-TYPE" "ZNF184 WILD-TYPE" "ZNF184 WILD-TYPE" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
"ZNF184 WILD-TYPE" "ZNF184 WILD-TYPE" "ZNF184 WILD-TYPE" "ZNF184 WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
"ZNF184 WILD-TYPE" "ZNF184 WILD-TYPE"   "ZNF184 MUTATED" "ZNF184 WILD-TYPE" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"ZNF184 WILD-TYPE" "ZNF184 WILD-TYPE" "ZNF184 WILD-TYPE" "ZNF184 WILD-TYPE" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
  "ZNF184 MUTATED" "ZNF184 WILD-TYPE" "ZNF184 WILD-TYPE"   "ZNF184 MUTATED" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
  "ZNF184 MUTATED" "ZNF184 WILD-TYPE" "ZNF184 WILD-TYPE" "ZNF184 WILD-TYPE" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
"ZNF184 WILD-TYPE" "ZNF184 WILD-TYPE" "ZNF184 WILD-TYPE" "ZNF184 WILD-TYPE" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
"ZNF184 WILD-TYPE" "ZNF184 WILD-TYPE" "ZNF184 WILD-TYPE"   "ZNF184 MUTATED" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
"ZNF184 WILD-TYPE" "ZNF184 WILD-TYPE" "ZNF184 WILD-TYPE" "ZNF184 WILD-TYPE" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
"ZNF184 WILD-TYPE" "ZNF184 WILD-TYPE" "ZNF184 WILD-TYPE" "ZNF184 WILD-TYPE" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
"ZNF184 WILD-TYPE" "ZNF184 WILD-TYPE" "ZNF184 WILD-TYPE" "ZNF184 WILD-TYPE" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"ZNF184 WILD-TYPE" "ZNF184 WILD-TYPE" "ZNF184 WILD-TYPE" "ZNF184 WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"ZNF184 WILD-TYPE"   "ZNF184 MUTATED" "ZNF184 WILD-TYPE" "ZNF184 WILD-TYPE" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
"ZNF184 WILD-TYPE" "ZNF184 WILD-TYPE"   "ZNF184 MUTATED" "ZNF184 WILD-TYPE" 
      TCGA-US-A77J 
"ZNF184 WILD-TYPE" 
[1] "hr=" "1.4"
D215V2, continuous
                  vv
clus               STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  ZNF184 MUTATED          0        0         1         7         0        1
  ZNF184 WILD-TYPE        1        4        10        44         2        2
D215V3, multiclass
                  vv
clus               T1+T2 T3+T4
  ZNF184 MUTATED       0     9
  ZNF184 WILD-TYPE     6    57
D215V4, multiclass
       clus
vv      ZNF184 MUTATED ZNF184 WILD-TYPE
  T1+T2              0                6
  T3+T4              9               57
D215V5, binary
                  cls
clus                0  1
  ZNF184 MUTATED    2  7
  ZNF184 WILD-TYPE 15 47
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ZNF184 MUTATED      2    7
  ZNF184 WILD-TYPE   15   47
   clus
vv  ZNF184 MUTATED ZNF184 WILD-TYPE
  0              2               15
  1              7               47
                  vv
clus               M0 M1 MX
  ZNF184 MUTATED    3  1  5
  ZNF184 WILD-TYPE 36  2 25
D215V6, multiclass
    clus
vv   ZNF184 MUTATED ZNF184 WILD-TYPE
  M0              3               36
  M1              1                2
  MX              5               25
D215V7, binary
                  cls
clus                0  1
  ZNF184 MUTATED    5  4
  ZNF184 WILD-TYPE 31 32
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ZNF184 MUTATED      5    4
  ZNF184 WILD-TYPE   31   32
        clus
vv       ZNF184 MUTATED ZNF184 WILD-TYPE
  FEMALE              5               31
  MALE                4               32
                  vv
clus               PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  ZNF184 MUTATED                                     9
  ZNF184 WILD-TYPE                                  56
                  vv
clus               PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  ZNF184 MUTATED                                       0
  ZNF184 WILD-TYPE                                     4
                  vv
clus               PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  ZNF184 MUTATED                                                  0
  ZNF184 WILD-TYPE                                                2
D215V8, multiclass
                                                  clus
vv                                                 ZNF184 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                           9
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                         0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA              0
                                                  clus
vv                                                 ZNF184 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                            56
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                           4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                2
D215V9, continuous
D215V10, continuous
[1] "Remove cluster labels:" "ZNF184 MUTATED"        
clus
  ZNF184 MUTATED ZNF184 WILD-TYPE 
               2               17 
      TCGA-FB-A4P5       TCGA-FB-A4P6       TCGA-FB-A5VM       TCGA-FB-A78T 
"ZNF184 WILD-TYPE" "ZNF184 WILD-TYPE" "ZNF184 WILD-TYPE" "ZNF184 WILD-TYPE" 
      TCGA-FB-A7DR       TCGA-H6-8124       TCGA-H8-A6C1       TCGA-IB-7644 
"ZNF184 WILD-TYPE" "ZNF184 WILD-TYPE" "ZNF184 WILD-TYPE" "ZNF184 WILD-TYPE" 
      TCGA-IB-7649       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7891 
"ZNF184 WILD-TYPE" "ZNF184 WILD-TYPE" "ZNF184 WILD-TYPE" "ZNF184 WILD-TYPE" 
      TCGA-IB-8126       TCGA-IB-8127       TCGA-IB-A5SS       TCGA-LB-A7SX 
"ZNF184 WILD-TYPE" "ZNF184 WILD-TYPE" "ZNF184 WILD-TYPE" "ZNF184 WILD-TYPE" 
      TCGA-OE-A75W 
"ZNF184 WILD-TYPE" 
                  vv
clus               R0 R1 RX
  ZNF184 MUTATED    5  4  0
  ZNF184 WILD-TYPE 37 20  2
D215V11, multiclass
    clus
vv   ZNF184 MUTATED ZNF184 WILD-TYPE
  R0              5               37
  R1              4               20
  RX              0                2
D215V12, continuous

Clustering(216) Variable = ACBD3 MUTATION ANALYSIS
D216V1, survival
                 sevent
clus2              0  1
  ACBD3 MUTATED    3  1
  ACBD3 WILD-TYPE 37 28
  ACBD3 MUTATED ACBD3 WILD-TYPE 
              4              65 
  ACBD3 MUTATED ACBD3 WILD-TYPE 
              1              28 
$`ACBD3 MUTATED`
TCGA-HZ-8003 TCGA-HZ-A4BH TCGA-IB-7651 TCGA-IB-8126 
        0.69         6.38        19.82         0.56 

$`ACBD3 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P5 TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR 
        0.13        11.93        12.66         2.47         0.03         5.46 
TCGA-FZ-5920 TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 
        2.01        36.20        20.81        12.89         7.66        13.02 
TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 
        7.89         0.92         0.66         0.13         0.26        12.13 
TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8005 TCGA-HZ-8315 
       11.87         0.26         0.62         0.79         3.95         0.92 
TCGA-HZ-8317 TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BK 
        0.53         0.16         2.99         0.76         0.95         1.51 
TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7652 
       11.41        49.38         4.77        21.90        15.35        15.65 
TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 
       27.98         4.04         3.62        43.79        15.81        19.66 
TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP 
       16.04         3.85        15.98        17.16        10.82         9.86 
TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W 
        7.20        15.12         0.26         1.35         4.18         3.62 
TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
        8.12        13.68        16.80        14.14        18.67 

  ACBD3 MUTATED ACBD3 WILD-TYPE 
           0.56            0.03 
  ACBD3 MUTATED ACBD3 WILD-TYPE 
          19.82           49.38 
  ACBD3 MUTATED ACBD3 WILD-TYPE 
          3.535           7.890 
[1] "0.6 - 19.8 (3.5)" "0.0 - 49.4 (7.9)"
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"ACBD3 WILD-TYPE" "ACBD3 WILD-TYPE" "ACBD3 WILD-TYPE" "ACBD3 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"ACBD3 WILD-TYPE" "ACBD3 WILD-TYPE" "ACBD3 WILD-TYPE" "ACBD3 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"ACBD3 WILD-TYPE" "ACBD3 WILD-TYPE" "ACBD3 WILD-TYPE" "ACBD3 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"ACBD3 WILD-TYPE" "ACBD3 WILD-TYPE" "ACBD3 WILD-TYPE" "ACBD3 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"ACBD3 WILD-TYPE" "ACBD3 WILD-TYPE" "ACBD3 WILD-TYPE" "ACBD3 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"ACBD3 WILD-TYPE" "ACBD3 WILD-TYPE" "ACBD3 WILD-TYPE" "ACBD3 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"ACBD3 WILD-TYPE" "ACBD3 WILD-TYPE" "ACBD3 WILD-TYPE" "ACBD3 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
  "ACBD3 MUTATED" "ACBD3 WILD-TYPE" "ACBD3 WILD-TYPE" "ACBD3 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"ACBD3 WILD-TYPE" "ACBD3 WILD-TYPE" "ACBD3 WILD-TYPE" "ACBD3 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
  "ACBD3 MUTATED" "ACBD3 WILD-TYPE" "ACBD3 WILD-TYPE" "ACBD3 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"ACBD3 WILD-TYPE" "ACBD3 WILD-TYPE" "ACBD3 WILD-TYPE"   "ACBD3 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"ACBD3 WILD-TYPE" "ACBD3 WILD-TYPE" "ACBD3 WILD-TYPE" "ACBD3 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"ACBD3 WILD-TYPE" "ACBD3 WILD-TYPE" "ACBD3 WILD-TYPE" "ACBD3 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"ACBD3 WILD-TYPE" "ACBD3 WILD-TYPE"   "ACBD3 MUTATED" "ACBD3 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"ACBD3 WILD-TYPE" "ACBD3 WILD-TYPE" "ACBD3 WILD-TYPE" "ACBD3 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"ACBD3 WILD-TYPE" "ACBD3 WILD-TYPE" "ACBD3 WILD-TYPE" "ACBD3 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"ACBD3 WILD-TYPE" "ACBD3 WILD-TYPE" "ACBD3 WILD-TYPE" "ACBD3 WILD-TYPE" 
     TCGA-US-A77J 
"ACBD3 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"ACBD3 WILD-TYPE" "ACBD3 WILD-TYPE" "ACBD3 WILD-TYPE" "ACBD3 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"ACBD3 WILD-TYPE" "ACBD3 WILD-TYPE" "ACBD3 WILD-TYPE" "ACBD3 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"ACBD3 WILD-TYPE" "ACBD3 WILD-TYPE" "ACBD3 WILD-TYPE" "ACBD3 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"ACBD3 WILD-TYPE" "ACBD3 WILD-TYPE" "ACBD3 WILD-TYPE" "ACBD3 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"ACBD3 WILD-TYPE" "ACBD3 WILD-TYPE" "ACBD3 WILD-TYPE" "ACBD3 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"ACBD3 WILD-TYPE" "ACBD3 WILD-TYPE" "ACBD3 WILD-TYPE" "ACBD3 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"ACBD3 WILD-TYPE" "ACBD3 WILD-TYPE" "ACBD3 WILD-TYPE" "ACBD3 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
  "ACBD3 MUTATED" "ACBD3 WILD-TYPE" "ACBD3 WILD-TYPE" "ACBD3 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"ACBD3 WILD-TYPE" "ACBD3 WILD-TYPE" "ACBD3 WILD-TYPE" "ACBD3 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
  "ACBD3 MUTATED" "ACBD3 WILD-TYPE" "ACBD3 WILD-TYPE" "ACBD3 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"ACBD3 WILD-TYPE" "ACBD3 WILD-TYPE" "ACBD3 WILD-TYPE"   "ACBD3 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"ACBD3 WILD-TYPE" "ACBD3 WILD-TYPE" "ACBD3 WILD-TYPE" "ACBD3 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"ACBD3 WILD-TYPE" "ACBD3 WILD-TYPE" "ACBD3 WILD-TYPE" "ACBD3 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"ACBD3 WILD-TYPE" "ACBD3 WILD-TYPE"   "ACBD3 MUTATED" "ACBD3 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"ACBD3 WILD-TYPE" "ACBD3 WILD-TYPE" "ACBD3 WILD-TYPE" "ACBD3 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"ACBD3 WILD-TYPE" "ACBD3 WILD-TYPE" "ACBD3 WILD-TYPE" "ACBD3 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"ACBD3 WILD-TYPE" "ACBD3 WILD-TYPE" "ACBD3 WILD-TYPE" "ACBD3 WILD-TYPE" 
     TCGA-US-A77J 
"ACBD3 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"ACBD3 WILD-TYPE" "ACBD3 WILD-TYPE" "ACBD3 WILD-TYPE" "ACBD3 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"ACBD3 WILD-TYPE" "ACBD3 WILD-TYPE" "ACBD3 WILD-TYPE" "ACBD3 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"ACBD3 WILD-TYPE" "ACBD3 WILD-TYPE" "ACBD3 WILD-TYPE" "ACBD3 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"ACBD3 WILD-TYPE" "ACBD3 WILD-TYPE" "ACBD3 WILD-TYPE" "ACBD3 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"ACBD3 WILD-TYPE" "ACBD3 WILD-TYPE" "ACBD3 WILD-TYPE" "ACBD3 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"ACBD3 WILD-TYPE" "ACBD3 WILD-TYPE" "ACBD3 WILD-TYPE" "ACBD3 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"ACBD3 WILD-TYPE" "ACBD3 WILD-TYPE" "ACBD3 WILD-TYPE" "ACBD3 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
  "ACBD3 MUTATED" "ACBD3 WILD-TYPE" "ACBD3 WILD-TYPE" "ACBD3 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"ACBD3 WILD-TYPE" "ACBD3 WILD-TYPE" "ACBD3 WILD-TYPE" "ACBD3 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
  "ACBD3 MUTATED" "ACBD3 WILD-TYPE" "ACBD3 WILD-TYPE" "ACBD3 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"ACBD3 WILD-TYPE" "ACBD3 WILD-TYPE" "ACBD3 WILD-TYPE"   "ACBD3 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"ACBD3 WILD-TYPE" "ACBD3 WILD-TYPE" "ACBD3 WILD-TYPE" "ACBD3 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"ACBD3 WILD-TYPE" "ACBD3 WILD-TYPE" "ACBD3 WILD-TYPE" "ACBD3 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"ACBD3 WILD-TYPE" "ACBD3 WILD-TYPE"   "ACBD3 MUTATED" "ACBD3 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"ACBD3 WILD-TYPE" "ACBD3 WILD-TYPE" "ACBD3 WILD-TYPE" "ACBD3 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"ACBD3 WILD-TYPE" "ACBD3 WILD-TYPE" "ACBD3 WILD-TYPE" "ACBD3 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"ACBD3 WILD-TYPE" "ACBD3 WILD-TYPE" "ACBD3 WILD-TYPE" "ACBD3 WILD-TYPE" 
     TCGA-US-A77J 
"ACBD3 WILD-TYPE" 
[1] "hr=" "1.4"
D216V2, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  ACBD3 MUTATED          0        0         0         3         1        0
  ACBD3 WILD-TYPE        1        4        11        48         1        3
D216V3, multiclass
                 vv
clus              T1+T2 T3+T4
  ACBD3 MUTATED       0     4
  ACBD3 WILD-TYPE     6    62
D216V4, multiclass
       clus
vv      ACBD3 MUTATED ACBD3 WILD-TYPE
  T1+T2             0               6
  T3+T4             4              62
D216V5, binary
                 cls
clus               0  1
  ACBD3 MUTATED    0  4
  ACBD3 WILD-TYPE 17 50
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ACBD3 MUTATED      0    4
  ACBD3 WILD-TYPE   17   50
   clus
vv  ACBD3 MUTATED ACBD3 WILD-TYPE
  0             0              17
  1             4              50
                 vv
clus              M0 M1 MX
  ACBD3 MUTATED    2  0  2
  ACBD3 WILD-TYPE 37  3 28
D216V6, multiclass
    clus
vv   ACBD3 MUTATED ACBD3 WILD-TYPE
  M0             2              37
  M1             0               3
  MX             2              28
D216V7, binary
                 cls
clus               0  1
  ACBD3 MUTATED    3  1
  ACBD3 WILD-TYPE 33 35
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ACBD3 MUTATED      3    1
  ACBD3 WILD-TYPE   33   35
        clus
vv       ACBD3 MUTATED ACBD3 WILD-TYPE
  FEMALE             3              33
  MALE               1              35
                 vv
clus              PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  ACBD3 MUTATED                                     4
  ACBD3 WILD-TYPE                                  61
                 vv
clus              PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  ACBD3 MUTATED                                       0
  ACBD3 WILD-TYPE                                     4
                 vv
clus              PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  ACBD3 MUTATED                                                  0
  ACBD3 WILD-TYPE                                                2
D216V8, multiclass
                                                  clus
vv                                                 ACBD3 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                          4
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                        0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA             0
                                                  clus
vv                                                 ACBD3 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                           61
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                          4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA               2
D216V9, continuous
[1] "Remove cluster labels:" "ACBD3 MUTATED"         
clus
  ACBD3 MUTATED ACBD3 WILD-TYPE 
              2              20 
     TCGA-F2-6880      TCGA-FB-A4P5      TCGA-FB-A4P6      TCGA-FB-A5VM 
"ACBD3 WILD-TYPE" "ACBD3 WILD-TYPE" "ACBD3 WILD-TYPE" "ACBD3 WILD-TYPE" 
     TCGA-FB-A78T      TCGA-FB-A7DR      TCGA-H6-8124      TCGA-H6-A45N 
"ACBD3 WILD-TYPE" "ACBD3 WILD-TYPE" "ACBD3 WILD-TYPE" "ACBD3 WILD-TYPE" 
     TCGA-H8-A6C1      TCGA-IB-7644      TCGA-IB-7649      TCGA-IB-7885 
"ACBD3 WILD-TYPE" "ACBD3 WILD-TYPE" "ACBD3 WILD-TYPE" "ACBD3 WILD-TYPE" 
     TCGA-IB-7886      TCGA-IB-7887      TCGA-IB-7891      TCGA-IB-8127 
"ACBD3 WILD-TYPE" "ACBD3 WILD-TYPE" "ACBD3 WILD-TYPE" "ACBD3 WILD-TYPE" 
     TCGA-IB-A5SS      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"ACBD3 WILD-TYPE" "ACBD3 WILD-TYPE" "ACBD3 WILD-TYPE" "ACBD3 WILD-TYPE" 
D216V10, continuous
[1] "Remove cluster labels:" "ACBD3 MUTATED"         
clus
  ACBD3 MUTATED ACBD3 WILD-TYPE 
              2              17 
     TCGA-FB-A4P5      TCGA-FB-A4P6      TCGA-FB-A5VM      TCGA-FB-A78T 
"ACBD3 WILD-TYPE" "ACBD3 WILD-TYPE" "ACBD3 WILD-TYPE" "ACBD3 WILD-TYPE" 
     TCGA-FB-A7DR      TCGA-H6-8124      TCGA-H8-A6C1      TCGA-IB-7644 
"ACBD3 WILD-TYPE" "ACBD3 WILD-TYPE" "ACBD3 WILD-TYPE" "ACBD3 WILD-TYPE" 
     TCGA-IB-7649      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7891 
"ACBD3 WILD-TYPE" "ACBD3 WILD-TYPE" "ACBD3 WILD-TYPE" "ACBD3 WILD-TYPE" 
     TCGA-IB-8127      TCGA-IB-A5SS      TCGA-IB-A6UG      TCGA-LB-A7SX 
"ACBD3 WILD-TYPE" "ACBD3 WILD-TYPE" "ACBD3 WILD-TYPE" "ACBD3 WILD-TYPE" 
     TCGA-OE-A75W 
"ACBD3 WILD-TYPE" 
                 vv
clus              R0 R1 RX
  ACBD3 MUTATED    2  2  0
  ACBD3 WILD-TYPE 40 22  2
D216V11, multiclass
    clus
vv   ACBD3 MUTATED ACBD3 WILD-TYPE
  R0             2              40
  R1             2              22
  RX             0               2
D216V12, continuous

Clustering(217) Variable = OR10Z1 MUTATION ANALYSIS
D217V1, survival
                  sevent
clus2               0  1
  OR10Z1 MUTATED    4  2
  OR10Z1 WILD-TYPE 36 27
  OR10Z1 MUTATED OR10Z1 WILD-TYPE 
               6               63 
  OR10Z1 MUTATED OR10Z1 WILD-TYPE 
               2               27 
$`OR10Z1 MUTATED`
TCGA-HZ-7919 TCGA-HZ-A4BH TCGA-IB-7651 TCGA-IB-7888 TCGA-IB-8126 TCGA-IB-8127 
        0.66         6.38        19.82        43.79         0.56        17.16 

$`OR10Z1 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P5 TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR 
        0.13        11.93        12.66         2.47         0.03         5.46 
TCGA-FZ-5920 TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 
        2.01        36.20        20.81        12.89         7.66        13.02 
TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 
        7.89         0.92         0.13         0.26        12.13        11.87 
TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 
        0.26         0.62         0.79         0.69         3.95         0.92 
TCGA-HZ-8317 TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BK 
        0.53         0.16         2.99         0.76         0.95         1.51 
TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7652 
       11.41        49.38         4.77        21.90        15.35        15.65 
TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 
       27.98         4.04         3.62        15.81        19.66        16.04 
TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS 
        3.85        15.98        10.82         9.86         7.20        15.12 
TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W TCGA-PZ-A5RE TCGA-Q3-A5QY 
        0.26         1.35         4.18         3.62         8.12        13.68 
TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
       16.80        14.14        18.67 

  OR10Z1 MUTATED OR10Z1 WILD-TYPE 
            0.56             0.03 
  OR10Z1 MUTATED OR10Z1 WILD-TYPE 
           43.79            49.38 
  OR10Z1 MUTATED OR10Z1 WILD-TYPE 
           11.77             7.66 
[1] "0.6 - 43.8 (11.8)" "0.0 - 49.4 (7.7)" 
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
"OR10Z1 WILD-TYPE" "OR10Z1 WILD-TYPE" "OR10Z1 WILD-TYPE" "OR10Z1 WILD-TYPE" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"OR10Z1 WILD-TYPE" "OR10Z1 WILD-TYPE" "OR10Z1 WILD-TYPE" "OR10Z1 WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
"OR10Z1 WILD-TYPE" "OR10Z1 WILD-TYPE" "OR10Z1 WILD-TYPE" "OR10Z1 WILD-TYPE" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"OR10Z1 WILD-TYPE" "OR10Z1 WILD-TYPE" "OR10Z1 WILD-TYPE" "OR10Z1 WILD-TYPE" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
"OR10Z1 WILD-TYPE" "OR10Z1 WILD-TYPE" "OR10Z1 WILD-TYPE" "OR10Z1 WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
  "OR10Z1 MUTATED" "OR10Z1 WILD-TYPE" "OR10Z1 WILD-TYPE" "OR10Z1 WILD-TYPE" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"OR10Z1 WILD-TYPE" "OR10Z1 WILD-TYPE" "OR10Z1 WILD-TYPE" "OR10Z1 WILD-TYPE" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
"OR10Z1 WILD-TYPE" "OR10Z1 WILD-TYPE" "OR10Z1 WILD-TYPE" "OR10Z1 WILD-TYPE" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
"OR10Z1 WILD-TYPE" "OR10Z1 WILD-TYPE" "OR10Z1 WILD-TYPE" "OR10Z1 WILD-TYPE" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
  "OR10Z1 MUTATED" "OR10Z1 WILD-TYPE" "OR10Z1 WILD-TYPE" "OR10Z1 WILD-TYPE" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
"OR10Z1 WILD-TYPE" "OR10Z1 WILD-TYPE" "OR10Z1 WILD-TYPE"   "OR10Z1 MUTATED" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
"OR10Z1 WILD-TYPE" "OR10Z1 WILD-TYPE" "OR10Z1 WILD-TYPE" "OR10Z1 WILD-TYPE" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
  "OR10Z1 MUTATED" "OR10Z1 WILD-TYPE" "OR10Z1 WILD-TYPE" "OR10Z1 WILD-TYPE" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
"OR10Z1 WILD-TYPE" "OR10Z1 WILD-TYPE"   "OR10Z1 MUTATED"   "OR10Z1 MUTATED" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"OR10Z1 WILD-TYPE" "OR10Z1 WILD-TYPE" "OR10Z1 WILD-TYPE" "OR10Z1 WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"OR10Z1 WILD-TYPE" "OR10Z1 WILD-TYPE" "OR10Z1 WILD-TYPE" "OR10Z1 WILD-TYPE" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
"OR10Z1 WILD-TYPE" "OR10Z1 WILD-TYPE" "OR10Z1 WILD-TYPE" "OR10Z1 WILD-TYPE" 
      TCGA-US-A77J 
"OR10Z1 WILD-TYPE" 
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
"OR10Z1 WILD-TYPE" "OR10Z1 WILD-TYPE" "OR10Z1 WILD-TYPE" "OR10Z1 WILD-TYPE" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"OR10Z1 WILD-TYPE" "OR10Z1 WILD-TYPE" "OR10Z1 WILD-TYPE" "OR10Z1 WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
"OR10Z1 WILD-TYPE" "OR10Z1 WILD-TYPE" "OR10Z1 WILD-TYPE" "OR10Z1 WILD-TYPE" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"OR10Z1 WILD-TYPE" "OR10Z1 WILD-TYPE" "OR10Z1 WILD-TYPE" "OR10Z1 WILD-TYPE" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
"OR10Z1 WILD-TYPE" "OR10Z1 WILD-TYPE" "OR10Z1 WILD-TYPE" "OR10Z1 WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
  "OR10Z1 MUTATED" "OR10Z1 WILD-TYPE" "OR10Z1 WILD-TYPE" "OR10Z1 WILD-TYPE" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"OR10Z1 WILD-TYPE" "OR10Z1 WILD-TYPE" "OR10Z1 WILD-TYPE" "OR10Z1 WILD-TYPE" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
"OR10Z1 WILD-TYPE" "OR10Z1 WILD-TYPE" "OR10Z1 WILD-TYPE" "OR10Z1 WILD-TYPE" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
"OR10Z1 WILD-TYPE" "OR10Z1 WILD-TYPE" "OR10Z1 WILD-TYPE" "OR10Z1 WILD-TYPE" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
  "OR10Z1 MUTATED" "OR10Z1 WILD-TYPE" "OR10Z1 WILD-TYPE" "OR10Z1 WILD-TYPE" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
"OR10Z1 WILD-TYPE" "OR10Z1 WILD-TYPE" "OR10Z1 WILD-TYPE"   "OR10Z1 MUTATED" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
"OR10Z1 WILD-TYPE" "OR10Z1 WILD-TYPE" "OR10Z1 WILD-TYPE" "OR10Z1 WILD-TYPE" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
  "OR10Z1 MUTATED" "OR10Z1 WILD-TYPE" "OR10Z1 WILD-TYPE" "OR10Z1 WILD-TYPE" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
"OR10Z1 WILD-TYPE" "OR10Z1 WILD-TYPE"   "OR10Z1 MUTATED"   "OR10Z1 MUTATED" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"OR10Z1 WILD-TYPE" "OR10Z1 WILD-TYPE" "OR10Z1 WILD-TYPE" "OR10Z1 WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"OR10Z1 WILD-TYPE" "OR10Z1 WILD-TYPE" "OR10Z1 WILD-TYPE" "OR10Z1 WILD-TYPE" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
"OR10Z1 WILD-TYPE" "OR10Z1 WILD-TYPE" "OR10Z1 WILD-TYPE" "OR10Z1 WILD-TYPE" 
      TCGA-US-A77J 
"OR10Z1 WILD-TYPE" 
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
"OR10Z1 WILD-TYPE" "OR10Z1 WILD-TYPE" "OR10Z1 WILD-TYPE" "OR10Z1 WILD-TYPE" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"OR10Z1 WILD-TYPE" "OR10Z1 WILD-TYPE" "OR10Z1 WILD-TYPE" "OR10Z1 WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
"OR10Z1 WILD-TYPE" "OR10Z1 WILD-TYPE" "OR10Z1 WILD-TYPE" "OR10Z1 WILD-TYPE" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"OR10Z1 WILD-TYPE" "OR10Z1 WILD-TYPE" "OR10Z1 WILD-TYPE" "OR10Z1 WILD-TYPE" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
"OR10Z1 WILD-TYPE" "OR10Z1 WILD-TYPE" "OR10Z1 WILD-TYPE" "OR10Z1 WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
  "OR10Z1 MUTATED" "OR10Z1 WILD-TYPE" "OR10Z1 WILD-TYPE" "OR10Z1 WILD-TYPE" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"OR10Z1 WILD-TYPE" "OR10Z1 WILD-TYPE" "OR10Z1 WILD-TYPE" "OR10Z1 WILD-TYPE" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
"OR10Z1 WILD-TYPE" "OR10Z1 WILD-TYPE" "OR10Z1 WILD-TYPE" "OR10Z1 WILD-TYPE" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
"OR10Z1 WILD-TYPE" "OR10Z1 WILD-TYPE" "OR10Z1 WILD-TYPE" "OR10Z1 WILD-TYPE" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
  "OR10Z1 MUTATED" "OR10Z1 WILD-TYPE" "OR10Z1 WILD-TYPE" "OR10Z1 WILD-TYPE" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
"OR10Z1 WILD-TYPE" "OR10Z1 WILD-TYPE" "OR10Z1 WILD-TYPE"   "OR10Z1 MUTATED" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
"OR10Z1 WILD-TYPE" "OR10Z1 WILD-TYPE" "OR10Z1 WILD-TYPE" "OR10Z1 WILD-TYPE" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
  "OR10Z1 MUTATED" "OR10Z1 WILD-TYPE" "OR10Z1 WILD-TYPE" "OR10Z1 WILD-TYPE" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
"OR10Z1 WILD-TYPE" "OR10Z1 WILD-TYPE"   "OR10Z1 MUTATED"   "OR10Z1 MUTATED" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"OR10Z1 WILD-TYPE" "OR10Z1 WILD-TYPE" "OR10Z1 WILD-TYPE" "OR10Z1 WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"OR10Z1 WILD-TYPE" "OR10Z1 WILD-TYPE" "OR10Z1 WILD-TYPE" "OR10Z1 WILD-TYPE" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
"OR10Z1 WILD-TYPE" "OR10Z1 WILD-TYPE" "OR10Z1 WILD-TYPE" "OR10Z1 WILD-TYPE" 
      TCGA-US-A77J 
"OR10Z1 WILD-TYPE" 
[1] "hr=" "2.6"
D217V2, continuous
                  vv
clus               STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  OR10Z1 MUTATED          0        0         1         4         1        0
  OR10Z1 WILD-TYPE        1        4        10        47         1        3
D217V3, multiclass
                  vv
clus               T1+T2 T3+T4
  OR10Z1 MUTATED       0     6
  OR10Z1 WILD-TYPE     6    60
D217V4, multiclass
       clus
vv      OR10Z1 MUTATED OR10Z1 WILD-TYPE
  T1+T2              0                6
  T3+T4              6               60
D217V5, binary
                  cls
clus                0  1
  OR10Z1 MUTATED    1  5
  OR10Z1 WILD-TYPE 16 49
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR10Z1 MUTATED      1    5
  OR10Z1 WILD-TYPE   16   49
   clus
vv  OR10Z1 MUTATED OR10Z1 WILD-TYPE
  0              1               16
  1              5               49
                  vv
clus               M0 M1 MX
  OR10Z1 MUTATED    5  0  1
  OR10Z1 WILD-TYPE 34  3 29
D217V6, multiclass
    clus
vv   OR10Z1 MUTATED OR10Z1 WILD-TYPE
  M0              5               34
  M1              0                3
  MX              1               29
D217V7, binary
                  cls
clus                0  1
  OR10Z1 MUTATED    4  2
  OR10Z1 WILD-TYPE 32 34
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR10Z1 MUTATED      4    2
  OR10Z1 WILD-TYPE   32   34
        clus
vv       OR10Z1 MUTATED OR10Z1 WILD-TYPE
  FEMALE              4               32
  MALE                2               34
                  vv
clus               PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  OR10Z1 MUTATED                                     6
  OR10Z1 WILD-TYPE                                  59
                  vv
clus               PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  OR10Z1 MUTATED                                       0
  OR10Z1 WILD-TYPE                                     4
                  vv
clus               PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  OR10Z1 MUTATED                                                  0
  OR10Z1 WILD-TYPE                                                2
D217V8, multiclass
                                                  clus
vv                                                 OR10Z1 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                           6
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                         0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA              0
                                                  clus
vv                                                 OR10Z1 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                            59
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                           4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                2
D217V9, continuous
D217V10, continuous
                  vv
clus               R0 R1 RX
  OR10Z1 MUTATED    2  4  0
  OR10Z1 WILD-TYPE 40 20  2
D217V11, multiclass
    clus
vv   OR10Z1 MUTATED OR10Z1 WILD-TYPE
  R0              2               40
  R1              4               20
  RX              0                2
D217V12, continuous

Clustering(218) Variable = BEGAIN MUTATION ANALYSIS
D218V1, survival
                  sevent
clus2               0  1
  BEGAIN MUTATED    4  1
  BEGAIN WILD-TYPE 36 28
  BEGAIN MUTATED BEGAIN WILD-TYPE 
               5               64 
  BEGAIN MUTATED BEGAIN WILD-TYPE 
               1               28 
$`BEGAIN MUTATED`
TCGA-FB-A7DR TCGA-HZ-7919 TCGA-HZ-7925 TCGA-HZ-8003 TCGA-IB-7651 
        5.46         0.66        11.87         0.69        19.82 

$`BEGAIN WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P5 TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FZ-5920 
        0.13        11.93        12.66         2.47         0.03         2.01 
TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7289 
       36.20        20.81        12.89         7.66        13.02         7.89 
TCGA-HZ-7918 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7926 TCGA-HZ-8001 
        0.92         0.13         0.26        12.13         0.26         0.62 
TCGA-HZ-8002 TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8636 TCGA-HZ-8638 
        0.79         3.95         0.92         0.53         0.16         2.99 
TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7645 
        0.76         0.95         6.38         1.51        11.41        49.38 
TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7886 
        4.77        21.90        15.35        15.65        27.98         4.04 
TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-7893 
        3.62        43.79        15.81        19.66        16.04         3.85 
TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ 
       15.98         0.56        17.16        10.82         9.86         7.20 
TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W TCGA-PZ-A5RE 
       15.12         0.26         1.35         4.18         3.62         8.12 
TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
       13.68        16.80        14.14        18.67 

  BEGAIN MUTATED BEGAIN WILD-TYPE 
            0.66             0.03 
  BEGAIN MUTATED BEGAIN WILD-TYPE 
           19.82            49.38 
  BEGAIN MUTATED BEGAIN WILD-TYPE 
           5.460            7.775 
[1] "0.7 - 19.8 (5.5)" "0.0 - 49.4 (7.8)"
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
"BEGAIN WILD-TYPE" "BEGAIN WILD-TYPE" "BEGAIN WILD-TYPE" "BEGAIN WILD-TYPE" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"BEGAIN WILD-TYPE" "BEGAIN WILD-TYPE" "BEGAIN WILD-TYPE" "BEGAIN WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
"BEGAIN WILD-TYPE" "BEGAIN WILD-TYPE" "BEGAIN WILD-TYPE"   "BEGAIN MUTATED" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"BEGAIN WILD-TYPE" "BEGAIN WILD-TYPE" "BEGAIN WILD-TYPE" "BEGAIN WILD-TYPE" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
"BEGAIN WILD-TYPE" "BEGAIN WILD-TYPE" "BEGAIN WILD-TYPE" "BEGAIN WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
  "BEGAIN MUTATED" "BEGAIN WILD-TYPE" "BEGAIN WILD-TYPE" "BEGAIN WILD-TYPE" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
  "BEGAIN MUTATED" "BEGAIN WILD-TYPE" "BEGAIN WILD-TYPE" "BEGAIN WILD-TYPE" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
  "BEGAIN MUTATED" "BEGAIN WILD-TYPE" "BEGAIN WILD-TYPE" "BEGAIN WILD-TYPE" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
"BEGAIN WILD-TYPE" "BEGAIN WILD-TYPE" "BEGAIN WILD-TYPE" "BEGAIN WILD-TYPE" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
"BEGAIN WILD-TYPE" "BEGAIN WILD-TYPE" "BEGAIN WILD-TYPE" "BEGAIN WILD-TYPE" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
"BEGAIN WILD-TYPE" "BEGAIN WILD-TYPE" "BEGAIN WILD-TYPE"   "BEGAIN MUTATED" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
"BEGAIN WILD-TYPE" "BEGAIN WILD-TYPE" "BEGAIN WILD-TYPE" "BEGAIN WILD-TYPE" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
"BEGAIN WILD-TYPE" "BEGAIN WILD-TYPE" "BEGAIN WILD-TYPE" "BEGAIN WILD-TYPE" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
"BEGAIN WILD-TYPE" "BEGAIN WILD-TYPE" "BEGAIN WILD-TYPE" "BEGAIN WILD-TYPE" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"BEGAIN WILD-TYPE" "BEGAIN WILD-TYPE" "BEGAIN WILD-TYPE" "BEGAIN WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"BEGAIN WILD-TYPE" "BEGAIN WILD-TYPE" "BEGAIN WILD-TYPE" "BEGAIN WILD-TYPE" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
"BEGAIN WILD-TYPE" "BEGAIN WILD-TYPE" "BEGAIN WILD-TYPE" "BEGAIN WILD-TYPE" 
      TCGA-US-A77J 
"BEGAIN WILD-TYPE" 
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
"BEGAIN WILD-TYPE" "BEGAIN WILD-TYPE" "BEGAIN WILD-TYPE" "BEGAIN WILD-TYPE" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"BEGAIN WILD-TYPE" "BEGAIN WILD-TYPE" "BEGAIN WILD-TYPE" "BEGAIN WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
"BEGAIN WILD-TYPE" "BEGAIN WILD-TYPE" "BEGAIN WILD-TYPE"   "BEGAIN MUTATED" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"BEGAIN WILD-TYPE" "BEGAIN WILD-TYPE" "BEGAIN WILD-TYPE" "BEGAIN WILD-TYPE" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
"BEGAIN WILD-TYPE" "BEGAIN WILD-TYPE" "BEGAIN WILD-TYPE" "BEGAIN WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
  "BEGAIN MUTATED" "BEGAIN WILD-TYPE" "BEGAIN WILD-TYPE" "BEGAIN WILD-TYPE" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
  "BEGAIN MUTATED" "BEGAIN WILD-TYPE" "BEGAIN WILD-TYPE" "BEGAIN WILD-TYPE" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
  "BEGAIN MUTATED" "BEGAIN WILD-TYPE" "BEGAIN WILD-TYPE" "BEGAIN WILD-TYPE" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
"BEGAIN WILD-TYPE" "BEGAIN WILD-TYPE" "BEGAIN WILD-TYPE" "BEGAIN WILD-TYPE" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
"BEGAIN WILD-TYPE" "BEGAIN WILD-TYPE" "BEGAIN WILD-TYPE" "BEGAIN WILD-TYPE" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
"BEGAIN WILD-TYPE" "BEGAIN WILD-TYPE" "BEGAIN WILD-TYPE"   "BEGAIN MUTATED" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
"BEGAIN WILD-TYPE" "BEGAIN WILD-TYPE" "BEGAIN WILD-TYPE" "BEGAIN WILD-TYPE" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
"BEGAIN WILD-TYPE" "BEGAIN WILD-TYPE" "BEGAIN WILD-TYPE" "BEGAIN WILD-TYPE" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
"BEGAIN WILD-TYPE" "BEGAIN WILD-TYPE" "BEGAIN WILD-TYPE" "BEGAIN WILD-TYPE" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"BEGAIN WILD-TYPE" "BEGAIN WILD-TYPE" "BEGAIN WILD-TYPE" "BEGAIN WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"BEGAIN WILD-TYPE" "BEGAIN WILD-TYPE" "BEGAIN WILD-TYPE" "BEGAIN WILD-TYPE" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
"BEGAIN WILD-TYPE" "BEGAIN WILD-TYPE" "BEGAIN WILD-TYPE" "BEGAIN WILD-TYPE" 
      TCGA-US-A77J 
"BEGAIN WILD-TYPE" 
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
"BEGAIN WILD-TYPE" "BEGAIN WILD-TYPE" "BEGAIN WILD-TYPE" "BEGAIN WILD-TYPE" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"BEGAIN WILD-TYPE" "BEGAIN WILD-TYPE" "BEGAIN WILD-TYPE" "BEGAIN WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
"BEGAIN WILD-TYPE" "BEGAIN WILD-TYPE" "BEGAIN WILD-TYPE"   "BEGAIN MUTATED" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"BEGAIN WILD-TYPE" "BEGAIN WILD-TYPE" "BEGAIN WILD-TYPE" "BEGAIN WILD-TYPE" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
"BEGAIN WILD-TYPE" "BEGAIN WILD-TYPE" "BEGAIN WILD-TYPE" "BEGAIN WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
  "BEGAIN MUTATED" "BEGAIN WILD-TYPE" "BEGAIN WILD-TYPE" "BEGAIN WILD-TYPE" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
  "BEGAIN MUTATED" "BEGAIN WILD-TYPE" "BEGAIN WILD-TYPE" "BEGAIN WILD-TYPE" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
  "BEGAIN MUTATED" "BEGAIN WILD-TYPE" "BEGAIN WILD-TYPE" "BEGAIN WILD-TYPE" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
"BEGAIN WILD-TYPE" "BEGAIN WILD-TYPE" "BEGAIN WILD-TYPE" "BEGAIN WILD-TYPE" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
"BEGAIN WILD-TYPE" "BEGAIN WILD-TYPE" "BEGAIN WILD-TYPE" "BEGAIN WILD-TYPE" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
"BEGAIN WILD-TYPE" "BEGAIN WILD-TYPE" "BEGAIN WILD-TYPE"   "BEGAIN MUTATED" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
"BEGAIN WILD-TYPE" "BEGAIN WILD-TYPE" "BEGAIN WILD-TYPE" "BEGAIN WILD-TYPE" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
"BEGAIN WILD-TYPE" "BEGAIN WILD-TYPE" "BEGAIN WILD-TYPE" "BEGAIN WILD-TYPE" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
"BEGAIN WILD-TYPE" "BEGAIN WILD-TYPE" "BEGAIN WILD-TYPE" "BEGAIN WILD-TYPE" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"BEGAIN WILD-TYPE" "BEGAIN WILD-TYPE" "BEGAIN WILD-TYPE" "BEGAIN WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"BEGAIN WILD-TYPE" "BEGAIN WILD-TYPE" "BEGAIN WILD-TYPE" "BEGAIN WILD-TYPE" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
"BEGAIN WILD-TYPE" "BEGAIN WILD-TYPE" "BEGAIN WILD-TYPE" "BEGAIN WILD-TYPE" 
      TCGA-US-A77J 
"BEGAIN WILD-TYPE" 
[1] "hr=" "1.8"
D218V2, continuous
                  vv
clus               STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  BEGAIN MUTATED          0        0         1         5         0        0
  BEGAIN WILD-TYPE        1        4        10        46         2        3
D218V3, multiclass
                  vv
clus               T1+T2 T3+T4
  BEGAIN MUTATED       0     6
  BEGAIN WILD-TYPE     6    60
D218V4, multiclass
       clus
vv      BEGAIN MUTATED BEGAIN WILD-TYPE
  T1+T2              0                6
  T3+T4              6               60
D218V5, binary
                  cls
clus                0  1
  BEGAIN MUTATED    0  5
  BEGAIN WILD-TYPE 17 49
[1] "tbl2"
                  cls
clus               [,1] [,2]
  BEGAIN MUTATED      0    5
  BEGAIN WILD-TYPE   17   49
   clus
vv  BEGAIN MUTATED BEGAIN WILD-TYPE
  0              0               17
  1              5               49
                  vv
clus               M0 M1 MX
  BEGAIN MUTATED    3  0  3
  BEGAIN WILD-TYPE 36  3 27
D218V6, multiclass
    clus
vv   BEGAIN MUTATED BEGAIN WILD-TYPE
  M0              3               36
  M1              0                3
  MX              3               27
D218V7, binary
                  cls
clus                0  1
  BEGAIN MUTATED    4  2
  BEGAIN WILD-TYPE 32 34
[1] "tbl2"
                  cls
clus               [,1] [,2]
  BEGAIN MUTATED      4    2
  BEGAIN WILD-TYPE   32   34
        clus
vv       BEGAIN MUTATED BEGAIN WILD-TYPE
  FEMALE              4               32
  MALE                2               34
                  vv
clus               PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  BEGAIN MUTATED                                     5
  BEGAIN WILD-TYPE                                  60
                  vv
clus               PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  BEGAIN MUTATED                                       0
  BEGAIN WILD-TYPE                                     4
                  vv
clus               PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  BEGAIN MUTATED                                                  1
  BEGAIN WILD-TYPE                                                1
D218V8, multiclass
                                                  clus
vv                                                 BEGAIN MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                           5
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                         0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA              1
                                                  clus
vv                                                 BEGAIN WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                            60
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                           4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                1
D218V9, continuous
[1] "Remove cluster labels:" "BEGAIN MUTATED"        
clus
  BEGAIN MUTATED BEGAIN WILD-TYPE 
               2               20 
      TCGA-F2-6880       TCGA-FB-A4P5       TCGA-FB-A4P6       TCGA-FB-A5VM 
"BEGAIN WILD-TYPE" "BEGAIN WILD-TYPE" "BEGAIN WILD-TYPE" "BEGAIN WILD-TYPE" 
      TCGA-FB-A78T       TCGA-H6-8124       TCGA-H6-A45N       TCGA-H8-A6C1 
"BEGAIN WILD-TYPE" "BEGAIN WILD-TYPE" "BEGAIN WILD-TYPE" "BEGAIN WILD-TYPE" 
      TCGA-IB-7644       TCGA-IB-7649       TCGA-IB-7885       TCGA-IB-7886 
"BEGAIN WILD-TYPE" "BEGAIN WILD-TYPE" "BEGAIN WILD-TYPE" "BEGAIN WILD-TYPE" 
      TCGA-IB-7887       TCGA-IB-7891       TCGA-IB-8126       TCGA-IB-8127 
"BEGAIN WILD-TYPE" "BEGAIN WILD-TYPE" "BEGAIN WILD-TYPE" "BEGAIN WILD-TYPE" 
      TCGA-IB-A5SS       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"BEGAIN WILD-TYPE" "BEGAIN WILD-TYPE" "BEGAIN WILD-TYPE" "BEGAIN WILD-TYPE" 
D218V10, continuous
[1] "Remove cluster labels:" "BEGAIN MUTATED"        
clus
  BEGAIN MUTATED BEGAIN WILD-TYPE 
               2               17 
      TCGA-FB-A4P5       TCGA-FB-A4P6       TCGA-FB-A5VM       TCGA-FB-A78T 
"BEGAIN WILD-TYPE" "BEGAIN WILD-TYPE" "BEGAIN WILD-TYPE" "BEGAIN WILD-TYPE" 
      TCGA-H6-8124       TCGA-H8-A6C1       TCGA-IB-7644       TCGA-IB-7649 
"BEGAIN WILD-TYPE" "BEGAIN WILD-TYPE" "BEGAIN WILD-TYPE" "BEGAIN WILD-TYPE" 
      TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7891       TCGA-IB-8126 
"BEGAIN WILD-TYPE" "BEGAIN WILD-TYPE" "BEGAIN WILD-TYPE" "BEGAIN WILD-TYPE" 
      TCGA-IB-8127       TCGA-IB-A5SS       TCGA-IB-A6UG       TCGA-LB-A7SX 
"BEGAIN WILD-TYPE" "BEGAIN WILD-TYPE" "BEGAIN WILD-TYPE" "BEGAIN WILD-TYPE" 
      TCGA-OE-A75W 
"BEGAIN WILD-TYPE" 
                  vv
clus               R0 R1 RX
  BEGAIN MUTATED    5  1  0
  BEGAIN WILD-TYPE 37 23  2
D218V11, multiclass
    clus
vv   BEGAIN MUTATED BEGAIN WILD-TYPE
  R0              5               37
  R1              1               23
  RX              0                2
D218V12, continuous

Clustering(219) Variable = TNKS2 MUTATION ANALYSIS
D219V1, survival
                 sevent
clus2              0  1
  TNKS2 MUTATED    5  1
  TNKS2 WILD-TYPE 35 28
  TNKS2 MUTATED TNKS2 WILD-TYPE 
              6              63 
  TNKS2 MUTATED TNKS2 WILD-TYPE 
              1              28 
$`TNKS2 MUTATED`
TCGA-F2-A44H TCGA-FB-A4P6 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-8315 TCGA-IB-7651 
       19.27        11.93         0.26        12.13         0.92        19.82 

$`TNKS2 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-FB-A4P5 
       10.98         9.70        11.84         7.10         5.03         0.13 
TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR TCGA-FZ-5920 TCGA-FZ-5922 
       12.66         2.47         0.03         5.46         2.01        36.20 
TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7289 TCGA-HZ-7918 
       20.81        12.89         7.66        13.02         7.89         0.92 
TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 
        0.66         0.13        11.87         0.26         0.62         0.79 
TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8317 TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G 
        0.69         3.95         0.53         0.16         2.99         0.76 
TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7646 
        0.95         6.38         1.51        11.41        49.38         4.77 
TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 
       21.90        15.35        15.65        27.98         4.04         3.62 
TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-7897 
       43.79        15.81        19.66        16.04         3.85        15.98 
TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS 
        0.56        17.16        10.82         9.86         7.20        15.12 
TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W TCGA-PZ-A5RE TCGA-Q3-A5QY 
        0.26         1.35         4.18         3.62         8.12        13.68 
TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
       16.80        14.14        18.67 

  TNKS2 MUTATED TNKS2 WILD-TYPE 
           0.26            0.03 
  TNKS2 MUTATED TNKS2 WILD-TYPE 
          19.82           49.38 
  TNKS2 MUTATED TNKS2 WILD-TYPE 
          12.03            7.20 
[1] "0.3 - 19.8 (12.0)" "0.0 - 49.4 (7.2)" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"TNKS2 WILD-TYPE" "TNKS2 WILD-TYPE" "TNKS2 WILD-TYPE" "TNKS2 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"TNKS2 WILD-TYPE"   "TNKS2 MUTATED" "TNKS2 WILD-TYPE"   "TNKS2 MUTATED" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"TNKS2 WILD-TYPE" "TNKS2 WILD-TYPE" "TNKS2 WILD-TYPE" "TNKS2 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"TNKS2 WILD-TYPE" "TNKS2 WILD-TYPE" "TNKS2 WILD-TYPE" "TNKS2 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"TNKS2 WILD-TYPE" "TNKS2 WILD-TYPE" "TNKS2 WILD-TYPE" "TNKS2 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"TNKS2 WILD-TYPE" "TNKS2 WILD-TYPE"   "TNKS2 MUTATED"   "TNKS2 MUTATED" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"TNKS2 WILD-TYPE" "TNKS2 WILD-TYPE" "TNKS2 WILD-TYPE" "TNKS2 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"TNKS2 WILD-TYPE" "TNKS2 WILD-TYPE"   "TNKS2 MUTATED" "TNKS2 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"TNKS2 WILD-TYPE" "TNKS2 WILD-TYPE" "TNKS2 WILD-TYPE" "TNKS2 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"TNKS2 WILD-TYPE" "TNKS2 WILD-TYPE" "TNKS2 WILD-TYPE" "TNKS2 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"TNKS2 WILD-TYPE" "TNKS2 WILD-TYPE" "TNKS2 WILD-TYPE"   "TNKS2 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"TNKS2 WILD-TYPE" "TNKS2 WILD-TYPE" "TNKS2 WILD-TYPE" "TNKS2 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"TNKS2 WILD-TYPE" "TNKS2 WILD-TYPE" "TNKS2 WILD-TYPE" "TNKS2 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"TNKS2 WILD-TYPE" "TNKS2 WILD-TYPE" "TNKS2 WILD-TYPE" "TNKS2 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"TNKS2 WILD-TYPE" "TNKS2 WILD-TYPE" "TNKS2 WILD-TYPE" "TNKS2 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"TNKS2 WILD-TYPE" "TNKS2 WILD-TYPE" "TNKS2 WILD-TYPE" "TNKS2 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"TNKS2 WILD-TYPE" "TNKS2 WILD-TYPE" "TNKS2 WILD-TYPE" "TNKS2 WILD-TYPE" 
     TCGA-US-A77J 
"TNKS2 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"TNKS2 WILD-TYPE" "TNKS2 WILD-TYPE" "TNKS2 WILD-TYPE" "TNKS2 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"TNKS2 WILD-TYPE"   "TNKS2 MUTATED" "TNKS2 WILD-TYPE"   "TNKS2 MUTATED" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"TNKS2 WILD-TYPE" "TNKS2 WILD-TYPE" "TNKS2 WILD-TYPE" "TNKS2 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"TNKS2 WILD-TYPE" "TNKS2 WILD-TYPE" "TNKS2 WILD-TYPE" "TNKS2 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"TNKS2 WILD-TYPE" "TNKS2 WILD-TYPE" "TNKS2 WILD-TYPE" "TNKS2 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"TNKS2 WILD-TYPE" "TNKS2 WILD-TYPE"   "TNKS2 MUTATED"   "TNKS2 MUTATED" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"TNKS2 WILD-TYPE" "TNKS2 WILD-TYPE" "TNKS2 WILD-TYPE" "TNKS2 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"TNKS2 WILD-TYPE" "TNKS2 WILD-TYPE"   "TNKS2 MUTATED" "TNKS2 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"TNKS2 WILD-TYPE" "TNKS2 WILD-TYPE" "TNKS2 WILD-TYPE" "TNKS2 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"TNKS2 WILD-TYPE" "TNKS2 WILD-TYPE" "TNKS2 WILD-TYPE" "TNKS2 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"TNKS2 WILD-TYPE" "TNKS2 WILD-TYPE" "TNKS2 WILD-TYPE"   "TNKS2 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"TNKS2 WILD-TYPE" "TNKS2 WILD-TYPE" "TNKS2 WILD-TYPE" "TNKS2 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"TNKS2 WILD-TYPE" "TNKS2 WILD-TYPE" "TNKS2 WILD-TYPE" "TNKS2 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"TNKS2 WILD-TYPE" "TNKS2 WILD-TYPE" "TNKS2 WILD-TYPE" "TNKS2 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"TNKS2 WILD-TYPE" "TNKS2 WILD-TYPE" "TNKS2 WILD-TYPE" "TNKS2 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"TNKS2 WILD-TYPE" "TNKS2 WILD-TYPE" "TNKS2 WILD-TYPE" "TNKS2 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"TNKS2 WILD-TYPE" "TNKS2 WILD-TYPE" "TNKS2 WILD-TYPE" "TNKS2 WILD-TYPE" 
     TCGA-US-A77J 
"TNKS2 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"TNKS2 WILD-TYPE" "TNKS2 WILD-TYPE" "TNKS2 WILD-TYPE" "TNKS2 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"TNKS2 WILD-TYPE"   "TNKS2 MUTATED" "TNKS2 WILD-TYPE"   "TNKS2 MUTATED" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"TNKS2 WILD-TYPE" "TNKS2 WILD-TYPE" "TNKS2 WILD-TYPE" "TNKS2 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"TNKS2 WILD-TYPE" "TNKS2 WILD-TYPE" "TNKS2 WILD-TYPE" "TNKS2 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"TNKS2 WILD-TYPE" "TNKS2 WILD-TYPE" "TNKS2 WILD-TYPE" "TNKS2 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"TNKS2 WILD-TYPE" "TNKS2 WILD-TYPE"   "TNKS2 MUTATED"   "TNKS2 MUTATED" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"TNKS2 WILD-TYPE" "TNKS2 WILD-TYPE" "TNKS2 WILD-TYPE" "TNKS2 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"TNKS2 WILD-TYPE" "TNKS2 WILD-TYPE"   "TNKS2 MUTATED" "TNKS2 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"TNKS2 WILD-TYPE" "TNKS2 WILD-TYPE" "TNKS2 WILD-TYPE" "TNKS2 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"TNKS2 WILD-TYPE" "TNKS2 WILD-TYPE" "TNKS2 WILD-TYPE" "TNKS2 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"TNKS2 WILD-TYPE" "TNKS2 WILD-TYPE" "TNKS2 WILD-TYPE"   "TNKS2 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"TNKS2 WILD-TYPE" "TNKS2 WILD-TYPE" "TNKS2 WILD-TYPE" "TNKS2 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"TNKS2 WILD-TYPE" "TNKS2 WILD-TYPE" "TNKS2 WILD-TYPE" "TNKS2 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"TNKS2 WILD-TYPE" "TNKS2 WILD-TYPE" "TNKS2 WILD-TYPE" "TNKS2 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"TNKS2 WILD-TYPE" "TNKS2 WILD-TYPE" "TNKS2 WILD-TYPE" "TNKS2 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"TNKS2 WILD-TYPE" "TNKS2 WILD-TYPE" "TNKS2 WILD-TYPE" "TNKS2 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"TNKS2 WILD-TYPE" "TNKS2 WILD-TYPE" "TNKS2 WILD-TYPE" "TNKS2 WILD-TYPE" 
     TCGA-US-A77J 
"TNKS2 WILD-TYPE" 
[1] "hr=" "3.1"
D219V2, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  TNKS2 MUTATED          0        0         4         2         0        0
  TNKS2 WILD-TYPE        1        4         7        49         2        3
D219V3, multiclass
                 vv
clus              T1+T2 T3+T4
  TNKS2 MUTATED       0     6
  TNKS2 WILD-TYPE     6    60
D219V4, multiclass
       clus
vv      TNKS2 MUTATED TNKS2 WILD-TYPE
  T1+T2             0               6
  T3+T4             6              60
D219V5, binary
                 cls
clus               0  1
  TNKS2 MUTATED    4  2
  TNKS2 WILD-TYPE 13 52
[1] "tbl2"
                 cls
clus              [,1] [,2]
  TNKS2 MUTATED      4    2
  TNKS2 WILD-TYPE   13   52
   clus
vv  TNKS2 MUTATED TNKS2 WILD-TYPE
  0             4              13
  1             2              52
                 vv
clus              M0 M1 MX
  TNKS2 MUTATED    2  0  4
  TNKS2 WILD-TYPE 37  3 26
D219V6, multiclass
    clus
vv   TNKS2 MUTATED TNKS2 WILD-TYPE
  M0             2              37
  M1             0               3
  MX             4              26
D219V7, binary
                 cls
clus               0  1
  TNKS2 MUTATED    3  3
  TNKS2 WILD-TYPE 33 33
[1] "tbl2"
                 cls
clus              [,1] [,2]
  TNKS2 MUTATED      3    3
  TNKS2 WILD-TYPE   33   33
        clus
vv       TNKS2 MUTATED TNKS2 WILD-TYPE
  FEMALE             3              33
  MALE               3              33
                 vv
clus              PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  TNKS2 MUTATED                                     6
  TNKS2 WILD-TYPE                                  59
                 vv
clus              PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  TNKS2 MUTATED                                       0
  TNKS2 WILD-TYPE                                     4
                 vv
clus              PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  TNKS2 MUTATED                                                  0
  TNKS2 WILD-TYPE                                                2
D219V8, multiclass
                                                  clus
vv                                                 TNKS2 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                          6
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                        0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA             0
                                                  clus
vv                                                 TNKS2 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                           59
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                          4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA               2
D219V9, continuous
[1] "Remove cluster labels:" "TNKS2 MUTATED"         
clus
  TNKS2 MUTATED TNKS2 WILD-TYPE 
              2              20 
     TCGA-F2-6880      TCGA-FB-A4P5      TCGA-FB-A5VM      TCGA-FB-A78T 
"TNKS2 WILD-TYPE" "TNKS2 WILD-TYPE" "TNKS2 WILD-TYPE" "TNKS2 WILD-TYPE" 
     TCGA-FB-A7DR      TCGA-H6-8124      TCGA-H6-A45N      TCGA-H8-A6C1 
"TNKS2 WILD-TYPE" "TNKS2 WILD-TYPE" "TNKS2 WILD-TYPE" "TNKS2 WILD-TYPE" 
     TCGA-IB-7644      TCGA-IB-7649      TCGA-IB-7885      TCGA-IB-7886 
"TNKS2 WILD-TYPE" "TNKS2 WILD-TYPE" "TNKS2 WILD-TYPE" "TNKS2 WILD-TYPE" 
     TCGA-IB-7887      TCGA-IB-7891      TCGA-IB-8126      TCGA-IB-8127 
"TNKS2 WILD-TYPE" "TNKS2 WILD-TYPE" "TNKS2 WILD-TYPE" "TNKS2 WILD-TYPE" 
     TCGA-IB-A5SS      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"TNKS2 WILD-TYPE" "TNKS2 WILD-TYPE" "TNKS2 WILD-TYPE" "TNKS2 WILD-TYPE" 
D219V10, continuous
[1] "Remove cluster labels:" "TNKS2 MUTATED"         
clus
  TNKS2 MUTATED TNKS2 WILD-TYPE 
              2              17 
     TCGA-FB-A4P5      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"TNKS2 WILD-TYPE" "TNKS2 WILD-TYPE" "TNKS2 WILD-TYPE" "TNKS2 WILD-TYPE" 
     TCGA-H6-8124      TCGA-H8-A6C1      TCGA-IB-7644      TCGA-IB-7649 
"TNKS2 WILD-TYPE" "TNKS2 WILD-TYPE" "TNKS2 WILD-TYPE" "TNKS2 WILD-TYPE" 
     TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7891      TCGA-IB-8126 
"TNKS2 WILD-TYPE" "TNKS2 WILD-TYPE" "TNKS2 WILD-TYPE" "TNKS2 WILD-TYPE" 
     TCGA-IB-8127      TCGA-IB-A5SS      TCGA-IB-A6UG      TCGA-LB-A7SX 
"TNKS2 WILD-TYPE" "TNKS2 WILD-TYPE" "TNKS2 WILD-TYPE" "TNKS2 WILD-TYPE" 
     TCGA-OE-A75W 
"TNKS2 WILD-TYPE" 
                 vv
clus              R0 R1 RX
  TNKS2 MUTATED    4  1  0
  TNKS2 WILD-TYPE 38 23  2
D219V11, multiclass
    clus
vv   TNKS2 MUTATED TNKS2 WILD-TYPE
  R0             4              38
  R1             1              23
  RX             0               2
D219V12, continuous

Clustering(220) Variable = SNIP1 MUTATION ANALYSIS
D220V1, survival
                 sevent
clus2              0  1
  SNIP1 MUTATED    4  2
  SNIP1 WILD-TYPE 36 27
  SNIP1 MUTATED SNIP1 WILD-TYPE 
              6              63 
  SNIP1 MUTATED SNIP1 WILD-TYPE 
              2              27 
$`SNIP1 MUTATED`
TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-8003 TCGA-IB-7645 TCGA-IB-7651 TCGA-IB-8127 
        0.13         0.26         0.69        49.38        19.82        17.16 

$`SNIP1 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P5 TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR 
        0.13        11.93        12.66         2.47         0.03         5.46 
TCGA-FZ-5920 TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 
        2.01        36.20        20.81        12.89         7.66        13.02 
TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 
        7.89         0.92         0.66        12.13        11.87         0.26 
TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8636 
        0.62         0.79         3.95         0.92         0.53         0.16 
TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 
        2.99         0.76         0.95         6.38         1.51        11.41 
TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7886 
        4.77        21.90        15.35        15.65        27.98         4.04 
TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-7893 
        3.62        43.79        15.81        19.66        16.04         3.85 
TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS 
       15.98         0.56        10.82         9.86         7.20        15.12 
TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W TCGA-PZ-A5RE TCGA-Q3-A5QY 
        0.26         1.35         4.18         3.62         8.12        13.68 
TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
       16.80        14.14        18.67 

  SNIP1 MUTATED SNIP1 WILD-TYPE 
           0.13            0.03 
  SNIP1 MUTATED SNIP1 WILD-TYPE 
          49.38           43.79 
  SNIP1 MUTATED SNIP1 WILD-TYPE 
          8.925           7.660 
[1] "0.1 - 49.4 (8.9)" "0.0 - 43.8 (7.7)"
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"SNIP1 WILD-TYPE"   "SNIP1 MUTATED"   "SNIP1 MUTATED" "SNIP1 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
  "SNIP1 MUTATED" "SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE"   "SNIP1 MUTATED" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE"   "SNIP1 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE"   "SNIP1 MUTATED" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE" 
     TCGA-US-A77J 
"SNIP1 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"SNIP1 WILD-TYPE"   "SNIP1 MUTATED"   "SNIP1 MUTATED" "SNIP1 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
  "SNIP1 MUTATED" "SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE"   "SNIP1 MUTATED" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE"   "SNIP1 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE"   "SNIP1 MUTATED" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE" 
     TCGA-US-A77J 
"SNIP1 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"SNIP1 WILD-TYPE"   "SNIP1 MUTATED"   "SNIP1 MUTATED" "SNIP1 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
  "SNIP1 MUTATED" "SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE"   "SNIP1 MUTATED" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE"   "SNIP1 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE"   "SNIP1 MUTATED" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE" 
     TCGA-US-A77J 
"SNIP1 WILD-TYPE" 
[1] "hr=" "5.3"
D220V2, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  SNIP1 MUTATED          0        0         1         5         0        0
  SNIP1 WILD-TYPE        1        4        10        46         2        3
D220V3, multiclass
                 vv
clus              T1+T2 T3+T4
  SNIP1 MUTATED       0     6
  SNIP1 WILD-TYPE     6    60
D220V4, multiclass
       clus
vv      SNIP1 MUTATED SNIP1 WILD-TYPE
  T1+T2             0               6
  T3+T4             6              60
D220V5, binary
                 cls
clus               0  1
  SNIP1 MUTATED    1  5
  SNIP1 WILD-TYPE 16 49
[1] "tbl2"
                 cls
clus              [,1] [,2]
  SNIP1 MUTATED      1    5
  SNIP1 WILD-TYPE   16   49
   clus
vv  SNIP1 MUTATED SNIP1 WILD-TYPE
  0             1              16
  1             5              49
                 vv
clus              M0 M1 MX
  SNIP1 MUTATED    3  0  3
  SNIP1 WILD-TYPE 36  3 27
D220V6, multiclass
    clus
vv   SNIP1 MUTATED SNIP1 WILD-TYPE
  M0             3              36
  M1             0               3
  MX             3              27
D220V7, binary
                 cls
clus               0  1
  SNIP1 MUTATED    4  2
  SNIP1 WILD-TYPE 32 34
[1] "tbl2"
                 cls
clus              [,1] [,2]
  SNIP1 MUTATED      4    2
  SNIP1 WILD-TYPE   32   34
        clus
vv       SNIP1 MUTATED SNIP1 WILD-TYPE
  FEMALE             4              32
  MALE               2              34
                 vv
clus              PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  SNIP1 MUTATED                                     6
  SNIP1 WILD-TYPE                                  59
                 vv
clus              PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  SNIP1 MUTATED                                       0
  SNIP1 WILD-TYPE                                     4
                 vv
clus              PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  SNIP1 MUTATED                                                  0
  SNIP1 WILD-TYPE                                                2
D220V8, multiclass
                                                  clus
vv                                                 SNIP1 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                          6
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                        0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA             0
                                                  clus
vv                                                 SNIP1 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                           59
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                          4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA               2
D220V9, continuous
[1] "Remove cluster labels:" "SNIP1 MUTATED"         
clus
  SNIP1 MUTATED SNIP1 WILD-TYPE 
              2              20 
     TCGA-F2-6880      TCGA-FB-A4P5      TCGA-FB-A4P6      TCGA-FB-A5VM 
"SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE" 
     TCGA-FB-A78T      TCGA-FB-A7DR      TCGA-H6-8124      TCGA-H6-A45N 
"SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE" 
     TCGA-H8-A6C1      TCGA-IB-7644      TCGA-IB-7649      TCGA-IB-7885 
"SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE" 
     TCGA-IB-7886      TCGA-IB-7887      TCGA-IB-7891      TCGA-IB-8126 
"SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE" 
     TCGA-IB-A5SS      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE" 
D220V10, continuous
[1] "Remove cluster labels:" "SNIP1 MUTATED"         
clus
  SNIP1 MUTATED SNIP1 WILD-TYPE 
              2              17 
     TCGA-FB-A4P5      TCGA-FB-A4P6      TCGA-FB-A5VM      TCGA-FB-A78T 
"SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE" 
     TCGA-FB-A7DR      TCGA-H6-8124      TCGA-H8-A6C1      TCGA-IB-7644 
"SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE" 
     TCGA-IB-7649      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7891 
"SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE" 
     TCGA-IB-8126      TCGA-IB-A5SS      TCGA-IB-A6UG      TCGA-LB-A7SX 
"SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE" "SNIP1 WILD-TYPE" 
     TCGA-OE-A75W 
"SNIP1 WILD-TYPE" 
                 vv
clus              R0 R1 RX
  SNIP1 MUTATED    5  1  0
  SNIP1 WILD-TYPE 37 23  2
D220V11, multiclass
    clus
vv   SNIP1 MUTATED SNIP1 WILD-TYPE
  R0             5              37
  R1             1              23
  RX             0               2
D220V12, continuous

Clustering(221) Variable = FAM134A MUTATION ANALYSIS
D221V1, survival
                   sevent
clus2                0  1
  FAM134A MUTATED    2  2
  FAM134A WILD-TYPE 38 27
  FAM134A MUTATED FAM134A WILD-TYPE 
                4                65 
  FAM134A MUTATED FAM134A WILD-TYPE 
                2                27 
$`FAM134A MUTATED`
TCGA-HZ-7919 TCGA-HZ-8005 TCGA-IB-7888 TCGA-IB-8127 
        0.66         3.95        43.79        17.16 

$`FAM134A WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P5 TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR 
        0.13        11.93        12.66         2.47         0.03         5.46 
TCGA-FZ-5920 TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 
        2.01        36.20        20.81        12.89         7.66        13.02 
TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 
        7.89         0.92         0.13         0.26        12.13        11.87 
TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8315 TCGA-HZ-8317 
        0.26         0.62         0.79         0.69         0.92         0.53 
TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK 
        0.16         2.99         0.76         0.95         6.38         1.51 
TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7651 
       11.41        49.38         4.77        21.90        15.35        19.82 
TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7889 TCGA-IB-7890 
       15.65        27.98         4.04         3.62        15.81        19.66 
TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-A5SO TCGA-IB-A5SP 
       16.04         3.85        15.98         0.56        10.82         9.86 
TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W 
        7.20        15.12         0.26         1.35         4.18         3.62 
TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
        8.12        13.68        16.80        14.14        18.67 

  FAM134A MUTATED FAM134A WILD-TYPE 
             0.66              0.03 
  FAM134A MUTATED FAM134A WILD-TYPE 
            43.79             49.38 
  FAM134A MUTATED FAM134A WILD-TYPE 
           10.555             7.660 
[1] "0.7 - 43.8 (10.6)" "0.0 - 49.4 (7.7)" 
       TCGA-F2-6879        TCGA-F2-6880        TCGA-F2-7273        TCGA-F2-7276 
"FAM134A WILD-TYPE" "FAM134A WILD-TYPE" "FAM134A WILD-TYPE" "FAM134A WILD-TYPE" 
       TCGA-F2-A44G        TCGA-F2-A44H        TCGA-FB-A4P5        TCGA-FB-A4P6 
"FAM134A WILD-TYPE" "FAM134A WILD-TYPE" "FAM134A WILD-TYPE" "FAM134A WILD-TYPE" 
       TCGA-FB-A545        TCGA-FB-A5VM        TCGA-FB-A78T        TCGA-FB-A7DR 
"FAM134A WILD-TYPE" "FAM134A WILD-TYPE" "FAM134A WILD-TYPE" "FAM134A WILD-TYPE" 
       TCGA-FZ-5920        TCGA-FZ-5922        TCGA-FZ-5923        TCGA-H6-8124 
"FAM134A WILD-TYPE" "FAM134A WILD-TYPE" "FAM134A WILD-TYPE" "FAM134A WILD-TYPE" 
       TCGA-H6-A45N        TCGA-H8-A6C1        TCGA-HZ-7289        TCGA-HZ-7918 
"FAM134A WILD-TYPE" "FAM134A WILD-TYPE" "FAM134A WILD-TYPE" "FAM134A WILD-TYPE" 
       TCGA-HZ-7919        TCGA-HZ-7922        TCGA-HZ-7923        TCGA-HZ-7924 
  "FAM134A MUTATED" "FAM134A WILD-TYPE" "FAM134A WILD-TYPE" "FAM134A WILD-TYPE" 
       TCGA-HZ-7925        TCGA-HZ-7926        TCGA-HZ-8001        TCGA-HZ-8002 
"FAM134A WILD-TYPE" "FAM134A WILD-TYPE" "FAM134A WILD-TYPE" "FAM134A WILD-TYPE" 
       TCGA-HZ-8003        TCGA-HZ-8005        TCGA-HZ-8315        TCGA-HZ-8317 
"FAM134A WILD-TYPE"   "FAM134A MUTATED" "FAM134A WILD-TYPE" "FAM134A WILD-TYPE" 
       TCGA-HZ-8636        TCGA-HZ-8638        TCGA-HZ-A49G        TCGA-HZ-A49H 
"FAM134A WILD-TYPE" "FAM134A WILD-TYPE" "FAM134A WILD-TYPE" "FAM134A WILD-TYPE" 
       TCGA-HZ-A4BH        TCGA-HZ-A4BK        TCGA-IB-7644        TCGA-IB-7645 
"FAM134A WILD-TYPE" "FAM134A WILD-TYPE" "FAM134A WILD-TYPE" "FAM134A WILD-TYPE" 
       TCGA-IB-7646        TCGA-IB-7647        TCGA-IB-7649        TCGA-IB-7651 
"FAM134A WILD-TYPE" "FAM134A WILD-TYPE" "FAM134A WILD-TYPE" "FAM134A WILD-TYPE" 
       TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-7886        TCGA-IB-7887 
"FAM134A WILD-TYPE" "FAM134A WILD-TYPE" "FAM134A WILD-TYPE" "FAM134A WILD-TYPE" 
       TCGA-IB-7888        TCGA-IB-7889        TCGA-IB-7890        TCGA-IB-7891 
  "FAM134A MUTATED" "FAM134A WILD-TYPE" "FAM134A WILD-TYPE" "FAM134A WILD-TYPE" 
       TCGA-IB-7893        TCGA-IB-7897        TCGA-IB-8126        TCGA-IB-8127 
"FAM134A WILD-TYPE" "FAM134A WILD-TYPE" "FAM134A WILD-TYPE"   "FAM134A MUTATED" 
       TCGA-IB-A5SO        TCGA-IB-A5SP        TCGA-IB-A5SQ        TCGA-IB-A5SS 
"FAM134A WILD-TYPE" "FAM134A WILD-TYPE" "FAM134A WILD-TYPE" "FAM134A WILD-TYPE" 
       TCGA-IB-A5ST        TCGA-IB-A6UG        TCGA-LB-A7SX        TCGA-OE-A75W 
"FAM134A WILD-TYPE" "FAM134A WILD-TYPE" "FAM134A WILD-TYPE" "FAM134A WILD-TYPE" 
       TCGA-PZ-A5RE        TCGA-Q3-A5QY        TCGA-US-A779        TCGA-US-A77E 
"FAM134A WILD-TYPE" "FAM134A WILD-TYPE" "FAM134A WILD-TYPE" "FAM134A WILD-TYPE" 
       TCGA-US-A77J 
"FAM134A WILD-TYPE" 
       TCGA-F2-6879        TCGA-F2-6880        TCGA-F2-7273        TCGA-F2-7276 
"FAM134A WILD-TYPE" "FAM134A WILD-TYPE" "FAM134A WILD-TYPE" "FAM134A WILD-TYPE" 
       TCGA-F2-A44G        TCGA-F2-A44H        TCGA-FB-A4P5        TCGA-FB-A4P6 
"FAM134A WILD-TYPE" "FAM134A WILD-TYPE" "FAM134A WILD-TYPE" "FAM134A WILD-TYPE" 
       TCGA-FB-A545        TCGA-FB-A5VM        TCGA-FB-A78T        TCGA-FB-A7DR 
"FAM134A WILD-TYPE" "FAM134A WILD-TYPE" "FAM134A WILD-TYPE" "FAM134A WILD-TYPE" 
       TCGA-FZ-5920        TCGA-FZ-5922        TCGA-FZ-5923        TCGA-H6-8124 
"FAM134A WILD-TYPE" "FAM134A WILD-TYPE" "FAM134A WILD-TYPE" "FAM134A WILD-TYPE" 
       TCGA-H6-A45N        TCGA-H8-A6C1        TCGA-HZ-7289        TCGA-HZ-7918 
"FAM134A WILD-TYPE" "FAM134A WILD-TYPE" "FAM134A WILD-TYPE" "FAM134A WILD-TYPE" 
       TCGA-HZ-7919        TCGA-HZ-7922        TCGA-HZ-7923        TCGA-HZ-7924 
  "FAM134A MUTATED" "FAM134A WILD-TYPE" "FAM134A WILD-TYPE" "FAM134A WILD-TYPE" 
       TCGA-HZ-7925        TCGA-HZ-7926        TCGA-HZ-8001        TCGA-HZ-8002 
"FAM134A WILD-TYPE" "FAM134A WILD-TYPE" "FAM134A WILD-TYPE" "FAM134A WILD-TYPE" 
       TCGA-HZ-8003        TCGA-HZ-8005        TCGA-HZ-8315        TCGA-HZ-8317 
"FAM134A WILD-TYPE"   "FAM134A MUTATED" "FAM134A WILD-TYPE" "FAM134A WILD-TYPE" 
       TCGA-HZ-8636        TCGA-HZ-8638        TCGA-HZ-A49G        TCGA-HZ-A49H 
"FAM134A WILD-TYPE" "FAM134A WILD-TYPE" "FAM134A WILD-TYPE" "FAM134A WILD-TYPE" 
       TCGA-HZ-A4BH        TCGA-HZ-A4BK        TCGA-IB-7644        TCGA-IB-7645 
"FAM134A WILD-TYPE" "FAM134A WILD-TYPE" "FAM134A WILD-TYPE" "FAM134A WILD-TYPE" 
       TCGA-IB-7646        TCGA-IB-7647        TCGA-IB-7649        TCGA-IB-7651 
"FAM134A WILD-TYPE" "FAM134A WILD-TYPE" "FAM134A WILD-TYPE" "FAM134A WILD-TYPE" 
       TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-7886        TCGA-IB-7887 
"FAM134A WILD-TYPE" "FAM134A WILD-TYPE" "FAM134A WILD-TYPE" "FAM134A WILD-TYPE" 
       TCGA-IB-7888        TCGA-IB-7889        TCGA-IB-7890        TCGA-IB-7891 
  "FAM134A MUTATED" "FAM134A WILD-TYPE" "FAM134A WILD-TYPE" "FAM134A WILD-TYPE" 
       TCGA-IB-7893        TCGA-IB-7897        TCGA-IB-8126        TCGA-IB-8127 
"FAM134A WILD-TYPE" "FAM134A WILD-TYPE" "FAM134A WILD-TYPE"   "FAM134A MUTATED" 
       TCGA-IB-A5SO        TCGA-IB-A5SP        TCGA-IB-A5SQ        TCGA-IB-A5SS 
"FAM134A WILD-TYPE" "FAM134A WILD-TYPE" "FAM134A WILD-TYPE" "FAM134A WILD-TYPE" 
       TCGA-IB-A5ST        TCGA-IB-A6UG        TCGA-LB-A7SX        TCGA-OE-A75W 
"FAM134A WILD-TYPE" "FAM134A WILD-TYPE" "FAM134A WILD-TYPE" "FAM134A WILD-TYPE" 
       TCGA-PZ-A5RE        TCGA-Q3-A5QY        TCGA-US-A779        TCGA-US-A77E 
"FAM134A WILD-TYPE" "FAM134A WILD-TYPE" "FAM134A WILD-TYPE" "FAM134A WILD-TYPE" 
       TCGA-US-A77J 
"FAM134A WILD-TYPE" 
       TCGA-F2-6879        TCGA-F2-6880        TCGA-F2-7273        TCGA-F2-7276 
"FAM134A WILD-TYPE" "FAM134A WILD-TYPE" "FAM134A WILD-TYPE" "FAM134A WILD-TYPE" 
       TCGA-F2-A44G        TCGA-F2-A44H        TCGA-FB-A4P5        TCGA-FB-A4P6 
"FAM134A WILD-TYPE" "FAM134A WILD-TYPE" "FAM134A WILD-TYPE" "FAM134A WILD-TYPE" 
       TCGA-FB-A545        TCGA-FB-A5VM        TCGA-FB-A78T        TCGA-FB-A7DR 
"FAM134A WILD-TYPE" "FAM134A WILD-TYPE" "FAM134A WILD-TYPE" "FAM134A WILD-TYPE" 
       TCGA-FZ-5920        TCGA-FZ-5922        TCGA-FZ-5923        TCGA-H6-8124 
"FAM134A WILD-TYPE" "FAM134A WILD-TYPE" "FAM134A WILD-TYPE" "FAM134A WILD-TYPE" 
       TCGA-H6-A45N        TCGA-H8-A6C1        TCGA-HZ-7289        TCGA-HZ-7918 
"FAM134A WILD-TYPE" "FAM134A WILD-TYPE" "FAM134A WILD-TYPE" "FAM134A WILD-TYPE" 
       TCGA-HZ-7919        TCGA-HZ-7922        TCGA-HZ-7923        TCGA-HZ-7924 
  "FAM134A MUTATED" "FAM134A WILD-TYPE" "FAM134A WILD-TYPE" "FAM134A WILD-TYPE" 
       TCGA-HZ-7925        TCGA-HZ-7926        TCGA-HZ-8001        TCGA-HZ-8002 
"FAM134A WILD-TYPE" "FAM134A WILD-TYPE" "FAM134A WILD-TYPE" "FAM134A WILD-TYPE" 
       TCGA-HZ-8003        TCGA-HZ-8005        TCGA-HZ-8315        TCGA-HZ-8317 
"FAM134A WILD-TYPE"   "FAM134A MUTATED" "FAM134A WILD-TYPE" "FAM134A WILD-TYPE" 
       TCGA-HZ-8636        TCGA-HZ-8638        TCGA-HZ-A49G        TCGA-HZ-A49H 
"FAM134A WILD-TYPE" "FAM134A WILD-TYPE" "FAM134A WILD-TYPE" "FAM134A WILD-TYPE" 
       TCGA-HZ-A4BH        TCGA-HZ-A4BK        TCGA-IB-7644        TCGA-IB-7645 
"FAM134A WILD-TYPE" "FAM134A WILD-TYPE" "FAM134A WILD-TYPE" "FAM134A WILD-TYPE" 
       TCGA-IB-7646        TCGA-IB-7647        TCGA-IB-7649        TCGA-IB-7651 
"FAM134A WILD-TYPE" "FAM134A WILD-TYPE" "FAM134A WILD-TYPE" "FAM134A WILD-TYPE" 
       TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-7886        TCGA-IB-7887 
"FAM134A WILD-TYPE" "FAM134A WILD-TYPE" "FAM134A WILD-TYPE" "FAM134A WILD-TYPE" 
       TCGA-IB-7888        TCGA-IB-7889        TCGA-IB-7890        TCGA-IB-7891 
  "FAM134A MUTATED" "FAM134A WILD-TYPE" "FAM134A WILD-TYPE" "FAM134A WILD-TYPE" 
       TCGA-IB-7893        TCGA-IB-7897        TCGA-IB-8126        TCGA-IB-8127 
"FAM134A WILD-TYPE" "FAM134A WILD-TYPE" "FAM134A WILD-TYPE"   "FAM134A MUTATED" 
       TCGA-IB-A5SO        TCGA-IB-A5SP        TCGA-IB-A5SQ        TCGA-IB-A5SS 
"FAM134A WILD-TYPE" "FAM134A WILD-TYPE" "FAM134A WILD-TYPE" "FAM134A WILD-TYPE" 
       TCGA-IB-A5ST        TCGA-IB-A6UG        TCGA-LB-A7SX        TCGA-OE-A75W 
"FAM134A WILD-TYPE" "FAM134A WILD-TYPE" "FAM134A WILD-TYPE" "FAM134A WILD-TYPE" 
       TCGA-PZ-A5RE        TCGA-Q3-A5QY        TCGA-US-A779        TCGA-US-A77E 
"FAM134A WILD-TYPE" "FAM134A WILD-TYPE" "FAM134A WILD-TYPE" "FAM134A WILD-TYPE" 
       TCGA-US-A77J 
"FAM134A WILD-TYPE" 
[1] "hr=" "1.8"
D221V2, continuous
                   vv
clus                STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  FAM134A MUTATED          0        0         1         3         0        0
  FAM134A WILD-TYPE        1        4        10        48         2        3
D221V3, multiclass
                   vv
clus                T1+T2 T3+T4
  FAM134A MUTATED       0     4
  FAM134A WILD-TYPE     6    62
D221V4, multiclass
       clus
vv      FAM134A MUTATED FAM134A WILD-TYPE
  T1+T2               0                 6
  T3+T4               4                62
D221V5, binary
                   cls
clus                 0  1
  FAM134A MUTATED    1  3
  FAM134A WILD-TYPE 16 51
[1] "tbl2"
                   cls
clus                [,1] [,2]
  FAM134A MUTATED      1    3
  FAM134A WILD-TYPE   16   51
   clus
vv  FAM134A MUTATED FAM134A WILD-TYPE
  0               1                16
  1               3                51
                   vv
clus                M0 M1 MX
  FAM134A MUTATED    3  0  1
  FAM134A WILD-TYPE 36  3 29
D221V6, multiclass
    clus
vv   FAM134A MUTATED FAM134A WILD-TYPE
  M0               3                36
  M1               0                 3
  MX               1                29
D221V7, binary
                   cls
clus                 0  1
  FAM134A MUTATED    2  2
  FAM134A WILD-TYPE 34 34
[1] "tbl2"
                   cls
clus                [,1] [,2]
  FAM134A MUTATED      2    2
  FAM134A WILD-TYPE   34   34
        clus
vv       FAM134A MUTATED FAM134A WILD-TYPE
  FEMALE               2                34
  MALE                 2                34
                   vv
clus                PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  FAM134A MUTATED                                     4
  FAM134A WILD-TYPE                                  61
                   vv
clus                PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  FAM134A MUTATED                                       0
  FAM134A WILD-TYPE                                     4
                   vv
clus                PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  FAM134A MUTATED                                                  0
  FAM134A WILD-TYPE                                                2
D221V8, multiclass
                                                  clus
vv                                                 FAM134A MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                            4
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                          0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA               0
                                                  clus
vv                                                 FAM134A WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                             61
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                            4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                 2
D221V9, continuous
[1] "Remove cluster labels:" "FAM134A MUTATED"       
clus
  FAM134A MUTATED FAM134A WILD-TYPE 
                1                21 
       TCGA-F2-6880        TCGA-FB-A4P5        TCGA-FB-A4P6        TCGA-FB-A5VM 
"FAM134A WILD-TYPE" "FAM134A WILD-TYPE" "FAM134A WILD-TYPE" "FAM134A WILD-TYPE" 
       TCGA-FB-A78T        TCGA-FB-A7DR        TCGA-H6-8124        TCGA-H6-A45N 
"FAM134A WILD-TYPE" "FAM134A WILD-TYPE" "FAM134A WILD-TYPE" "FAM134A WILD-TYPE" 
       TCGA-H8-A6C1        TCGA-IB-7644        TCGA-IB-7649        TCGA-IB-7651 
"FAM134A WILD-TYPE" "FAM134A WILD-TYPE" "FAM134A WILD-TYPE" "FAM134A WILD-TYPE" 
       TCGA-IB-7885        TCGA-IB-7886        TCGA-IB-7887        TCGA-IB-7891 
"FAM134A WILD-TYPE" "FAM134A WILD-TYPE" "FAM134A WILD-TYPE" "FAM134A WILD-TYPE" 
       TCGA-IB-8126        TCGA-IB-A5SS        TCGA-IB-A6UG        TCGA-LB-A7SX 
"FAM134A WILD-TYPE" "FAM134A WILD-TYPE" "FAM134A WILD-TYPE" "FAM134A WILD-TYPE" 
       TCGA-OE-A75W 
"FAM134A WILD-TYPE" 
D221V10, continuous
[1] "Remove cluster labels:" "FAM134A MUTATED"       
clus
  FAM134A MUTATED FAM134A WILD-TYPE 
                1                18 
       TCGA-FB-A4P5        TCGA-FB-A4P6        TCGA-FB-A5VM        TCGA-FB-A78T 
"FAM134A WILD-TYPE" "FAM134A WILD-TYPE" "FAM134A WILD-TYPE" "FAM134A WILD-TYPE" 
       TCGA-FB-A7DR        TCGA-H6-8124        TCGA-H8-A6C1        TCGA-IB-7644 
"FAM134A WILD-TYPE" "FAM134A WILD-TYPE" "FAM134A WILD-TYPE" "FAM134A WILD-TYPE" 
       TCGA-IB-7649        TCGA-IB-7651        TCGA-IB-7885        TCGA-IB-7886 
"FAM134A WILD-TYPE" "FAM134A WILD-TYPE" "FAM134A WILD-TYPE" "FAM134A WILD-TYPE" 
       TCGA-IB-7891        TCGA-IB-8126        TCGA-IB-A5SS        TCGA-IB-A6UG 
"FAM134A WILD-TYPE" "FAM134A WILD-TYPE" "FAM134A WILD-TYPE" "FAM134A WILD-TYPE" 
       TCGA-LB-A7SX        TCGA-OE-A75W 
"FAM134A WILD-TYPE" "FAM134A WILD-TYPE" 
                   vv
clus                R0 R1 RX
  FAM134A MUTATED    1  3  0
  FAM134A WILD-TYPE 41 21  2
D221V11, multiclass
    clus
vv   FAM134A MUTATED FAM134A WILD-TYPE
  R0               1                41
  R1               3                21
  RX               0                 2
D221V12, continuous

Clustering(222) Variable = RTKN2 MUTATION ANALYSIS
D222V1, survival
                 sevent
clus2              0  1
  RTKN2 MUTATED    4  2
  RTKN2 WILD-TYPE 36 27
  RTKN2 MUTATED RTKN2 WILD-TYPE 
              6              63 
  RTKN2 MUTATED RTKN2 WILD-TYPE 
              2              27 
$`RTKN2 MUTATED`
TCGA-F2-7276 TCGA-FB-A7DR TCGA-H6-8124 TCGA-HZ-7925 TCGA-HZ-8001 TCGA-IB-7644 
        7.10         5.46        12.89        11.87         0.62        11.41 

$`RTKN2 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-A44G TCGA-F2-A44H TCGA-FB-A4P5 
       10.98         9.70        11.84         5.03        19.27         0.13 
TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FZ-5920 TCGA-FZ-5922 
       11.93        12.66         2.47         0.03         2.01        36.20 
TCGA-FZ-5923 TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-7919 
       20.81         7.66        13.02         7.89         0.92         0.66 
TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7926 TCGA-HZ-8002 TCGA-HZ-8003 
        0.13         0.26        12.13         0.26         0.79         0.69 
TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G 
        3.95         0.92         0.53         0.16         2.99         0.76 
TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 
        0.95         6.38         1.51        49.38         4.77        21.90 
TCGA-IB-7649 TCGA-IB-7651 TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 
       15.35        19.82        15.65        27.98         4.04         3.62 
TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-7897 
       43.79        15.81        19.66        16.04         3.85        15.98 
TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS 
        0.56        17.16        10.82         9.86         7.20        15.12 
TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W TCGA-PZ-A5RE TCGA-Q3-A5QY 
        0.26         1.35         4.18         3.62         8.12        13.68 
TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
       16.80        14.14        18.67 

  RTKN2 MUTATED RTKN2 WILD-TYPE 
           0.62            0.03 
  RTKN2 MUTATED RTKN2 WILD-TYPE 
          12.89           49.38 
  RTKN2 MUTATED RTKN2 WILD-TYPE 
          9.255           7.660 
[1] "0.6 - 12.9 (9.3)" "0.0 - 49.4 (7.7)"
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"RTKN2 WILD-TYPE" "RTKN2 WILD-TYPE" "RTKN2 WILD-TYPE"   "RTKN2 MUTATED" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"RTKN2 WILD-TYPE" "RTKN2 WILD-TYPE" "RTKN2 WILD-TYPE" "RTKN2 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"RTKN2 WILD-TYPE" "RTKN2 WILD-TYPE" "RTKN2 WILD-TYPE"   "RTKN2 MUTATED" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"RTKN2 WILD-TYPE" "RTKN2 WILD-TYPE" "RTKN2 WILD-TYPE"   "RTKN2 MUTATED" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"RTKN2 WILD-TYPE" "RTKN2 WILD-TYPE" "RTKN2 WILD-TYPE" "RTKN2 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"RTKN2 WILD-TYPE" "RTKN2 WILD-TYPE" "RTKN2 WILD-TYPE" "RTKN2 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
  "RTKN2 MUTATED" "RTKN2 WILD-TYPE"   "RTKN2 MUTATED" "RTKN2 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"RTKN2 WILD-TYPE" "RTKN2 WILD-TYPE" "RTKN2 WILD-TYPE" "RTKN2 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"RTKN2 WILD-TYPE" "RTKN2 WILD-TYPE" "RTKN2 WILD-TYPE" "RTKN2 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"RTKN2 WILD-TYPE" "RTKN2 WILD-TYPE"   "RTKN2 MUTATED" "RTKN2 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"RTKN2 WILD-TYPE" "RTKN2 WILD-TYPE" "RTKN2 WILD-TYPE" "RTKN2 WILD-TYPE" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"RTKN2 WILD-TYPE" "RTKN2 WILD-TYPE" "RTKN2 WILD-TYPE" "RTKN2 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"RTKN2 WILD-TYPE" "RTKN2 WILD-TYPE" "RTKN2 WILD-TYPE" "RTKN2 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"RTKN2 WILD-TYPE" "RTKN2 WILD-TYPE" "RTKN2 WILD-TYPE" "RTKN2 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"RTKN2 WILD-TYPE" "RTKN2 WILD-TYPE" "RTKN2 WILD-TYPE" "RTKN2 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"RTKN2 WILD-TYPE" "RTKN2 WILD-TYPE" "RTKN2 WILD-TYPE" "RTKN2 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"RTKN2 WILD-TYPE" "RTKN2 WILD-TYPE" "RTKN2 WILD-TYPE" "RTKN2 WILD-TYPE" 
     TCGA-US-A77J 
"RTKN2 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"RTKN2 WILD-TYPE" "RTKN2 WILD-TYPE" "RTKN2 WILD-TYPE"   "RTKN2 MUTATED" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"RTKN2 WILD-TYPE" "RTKN2 WILD-TYPE" "RTKN2 WILD-TYPE" "RTKN2 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"RTKN2 WILD-TYPE" "RTKN2 WILD-TYPE" "RTKN2 WILD-TYPE"   "RTKN2 MUTATED" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"RTKN2 WILD-TYPE" "RTKN2 WILD-TYPE" "RTKN2 WILD-TYPE"   "RTKN2 MUTATED" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"RTKN2 WILD-TYPE" "RTKN2 WILD-TYPE" "RTKN2 WILD-TYPE" "RTKN2 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"RTKN2 WILD-TYPE" "RTKN2 WILD-TYPE" "RTKN2 WILD-TYPE" "RTKN2 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
  "RTKN2 MUTATED" "RTKN2 WILD-TYPE"   "RTKN2 MUTATED" "RTKN2 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"RTKN2 WILD-TYPE" "RTKN2 WILD-TYPE" "RTKN2 WILD-TYPE" "RTKN2 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"RTKN2 WILD-TYPE" "RTKN2 WILD-TYPE" "RTKN2 WILD-TYPE" "RTKN2 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"RTKN2 WILD-TYPE" "RTKN2 WILD-TYPE"   "RTKN2 MUTATED" "RTKN2 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"RTKN2 WILD-TYPE" "RTKN2 WILD-TYPE" "RTKN2 WILD-TYPE" "RTKN2 WILD-TYPE" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"RTKN2 WILD-TYPE" "RTKN2 WILD-TYPE" "RTKN2 WILD-TYPE" "RTKN2 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"RTKN2 WILD-TYPE" "RTKN2 WILD-TYPE" "RTKN2 WILD-TYPE" "RTKN2 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"RTKN2 WILD-TYPE" "RTKN2 WILD-TYPE" "RTKN2 WILD-TYPE" "RTKN2 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"RTKN2 WILD-TYPE" "RTKN2 WILD-TYPE" "RTKN2 WILD-TYPE" "RTKN2 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"RTKN2 WILD-TYPE" "RTKN2 WILD-TYPE" "RTKN2 WILD-TYPE" "RTKN2 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"RTKN2 WILD-TYPE" "RTKN2 WILD-TYPE" "RTKN2 WILD-TYPE" "RTKN2 WILD-TYPE" 
     TCGA-US-A77J 
"RTKN2 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"RTKN2 WILD-TYPE" "RTKN2 WILD-TYPE" "RTKN2 WILD-TYPE"   "RTKN2 MUTATED" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"RTKN2 WILD-TYPE" "RTKN2 WILD-TYPE" "RTKN2 WILD-TYPE" "RTKN2 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"RTKN2 WILD-TYPE" "RTKN2 WILD-TYPE" "RTKN2 WILD-TYPE"   "RTKN2 MUTATED" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"RTKN2 WILD-TYPE" "RTKN2 WILD-TYPE" "RTKN2 WILD-TYPE"   "RTKN2 MUTATED" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"RTKN2 WILD-TYPE" "RTKN2 WILD-TYPE" "RTKN2 WILD-TYPE" "RTKN2 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"RTKN2 WILD-TYPE" "RTKN2 WILD-TYPE" "RTKN2 WILD-TYPE" "RTKN2 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
  "RTKN2 MUTATED" "RTKN2 WILD-TYPE"   "RTKN2 MUTATED" "RTKN2 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"RTKN2 WILD-TYPE" "RTKN2 WILD-TYPE" "RTKN2 WILD-TYPE" "RTKN2 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"RTKN2 WILD-TYPE" "RTKN2 WILD-TYPE" "RTKN2 WILD-TYPE" "RTKN2 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"RTKN2 WILD-TYPE" "RTKN2 WILD-TYPE"   "RTKN2 MUTATED" "RTKN2 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"RTKN2 WILD-TYPE" "RTKN2 WILD-TYPE" "RTKN2 WILD-TYPE" "RTKN2 WILD-TYPE" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"RTKN2 WILD-TYPE" "RTKN2 WILD-TYPE" "RTKN2 WILD-TYPE" "RTKN2 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"RTKN2 WILD-TYPE" "RTKN2 WILD-TYPE" "RTKN2 WILD-TYPE" "RTKN2 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"RTKN2 WILD-TYPE" "RTKN2 WILD-TYPE" "RTKN2 WILD-TYPE" "RTKN2 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"RTKN2 WILD-TYPE" "RTKN2 WILD-TYPE" "RTKN2 WILD-TYPE" "RTKN2 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"RTKN2 WILD-TYPE" "RTKN2 WILD-TYPE" "RTKN2 WILD-TYPE" "RTKN2 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"RTKN2 WILD-TYPE" "RTKN2 WILD-TYPE" "RTKN2 WILD-TYPE" "RTKN2 WILD-TYPE" 
     TCGA-US-A77J 
"RTKN2 WILD-TYPE" 
[1] "hr=" "1.3"
D222V2, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  RTKN2 MUTATED          0        0         1         3         1        1
  RTKN2 WILD-TYPE        1        4        10        48         1        2
D222V3, multiclass
                 vv
clus              T1+T2 T3+T4
  RTKN2 MUTATED       0     6
  RTKN2 WILD-TYPE     6    60
D222V4, multiclass
       clus
vv      RTKN2 MUTATED RTKN2 WILD-TYPE
  T1+T2             0               6
  T3+T4             6              60
D222V5, binary
                 cls
clus               0  1
  RTKN2 MUTATED    1  4
  RTKN2 WILD-TYPE 16 50
[1] "tbl2"
                 cls
clus              [,1] [,2]
  RTKN2 MUTATED      1    4
  RTKN2 WILD-TYPE   16   50
   clus
vv  RTKN2 MUTATED RTKN2 WILD-TYPE
  0             1              16
  1             4              50
                 vv
clus              M0 M1 MX
  RTKN2 MUTATED    3  1  2
  RTKN2 WILD-TYPE 36  2 28
D222V6, multiclass
    clus
vv   RTKN2 MUTATED RTKN2 WILD-TYPE
  M0             3              36
  M1             1               2
  MX             2              28
D222V7, binary
                 cls
clus               0  1
  RTKN2 MUTATED    2  4
  RTKN2 WILD-TYPE 34 32
[1] "tbl2"
                 cls
clus              [,1] [,2]
  RTKN2 MUTATED      2    4
  RTKN2 WILD-TYPE   34   32
        clus
vv       RTKN2 MUTATED RTKN2 WILD-TYPE
  FEMALE             2              34
  MALE               4              32
                 vv
clus              PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  RTKN2 MUTATED                                     5
  RTKN2 WILD-TYPE                                  60
                 vv
clus              PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  RTKN2 MUTATED                                       0
  RTKN2 WILD-TYPE                                     4
                 vv
clus              PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  RTKN2 MUTATED                                                  1
  RTKN2 WILD-TYPE                                                1
D222V8, multiclass
                                                  clus
vv                                                 RTKN2 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                          5
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                        0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA             1
                                                  clus
vv                                                 RTKN2 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                           60
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                          4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA               1
D222V9, continuous
D222V10, continuous
                 vv
clus              R0 R1 RX
  RTKN2 MUTATED    5  1  0
  RTKN2 WILD-TYPE 37 23  2
D222V11, multiclass
    clus
vv   RTKN2 MUTATED RTKN2 WILD-TYPE
  R0             5              37
  R1             1              23
  RX             0               2
D222V12, continuous

Clustering(223) Variable = OR2T33 MUTATION ANALYSIS
D223V1, survival
                  sevent
clus2               0  1
  OR2T33 MUTATED    3  2
  OR2T33 WILD-TYPE 37 27
  OR2T33 MUTATED OR2T33 WILD-TYPE 
               5               64 
  OR2T33 MUTATED OR2T33 WILD-TYPE 
               2               27 
$`OR2T33 MUTATED`
TCGA-HZ-7922 TCGA-HZ-8636 TCGA-HZ-A4BK TCGA-IB-7651 TCGA-IB-7887 
        0.13         0.16         1.51        19.82         3.62 

$`OR2T33 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P5 TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR 
        0.13        11.93        12.66         2.47         0.03         5.46 
TCGA-FZ-5920 TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 
        2.01        36.20        20.81        12.89         7.66        13.02 
TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 
        7.89         0.92         0.66         0.26        12.13        11.87 
TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 
        0.26         0.62         0.79         0.69         3.95         0.92 
TCGA-HZ-8317 TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-IB-7644 
        0.53         2.99         0.76         0.95         6.38        11.41 
TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7652 TCGA-IB-7885 
       49.38         4.77        21.90        15.35        15.65        27.98 
TCGA-IB-7886 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-7893 
        4.04        43.79        15.81        19.66        16.04         3.85 
TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ 
       15.98         0.56        17.16        10.82         9.86         7.20 
TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W TCGA-PZ-A5RE 
       15.12         0.26         1.35         4.18         3.62         8.12 
TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
       13.68        16.80        14.14        18.67 

  OR2T33 MUTATED OR2T33 WILD-TYPE 
            0.13             0.03 
  OR2T33 MUTATED OR2T33 WILD-TYPE 
           19.82            49.38 
  OR2T33 MUTATED OR2T33 WILD-TYPE 
           1.510            8.005 
[1] "0.1 - 19.8 (1.5)" "0.0 - 49.4 (8.0)"
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
"OR2T33 WILD-TYPE"   "OR2T33 MUTATED" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
  "OR2T33 MUTATED" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
"OR2T33 WILD-TYPE"   "OR2T33 MUTATED" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE"   "OR2T33 MUTATED" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE"   "OR2T33 MUTATED" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-US-A77J 
"OR2T33 WILD-TYPE" 
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
"OR2T33 WILD-TYPE"   "OR2T33 MUTATED" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
  "OR2T33 MUTATED" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
"OR2T33 WILD-TYPE"   "OR2T33 MUTATED" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE"   "OR2T33 MUTATED" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE"   "OR2T33 MUTATED" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-US-A77J 
"OR2T33 WILD-TYPE" 
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
"OR2T33 WILD-TYPE"   "OR2T33 MUTATED" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
  "OR2T33 MUTATED" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
"OR2T33 WILD-TYPE"   "OR2T33 MUTATED" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE"   "OR2T33 MUTATED" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE"   "OR2T33 MUTATED" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-US-A77J 
"OR2T33 WILD-TYPE" 
[1] "hr=" "1.6"
D223V2, continuous
                  vv
clus               STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  OR2T33 MUTATED          0        0         0         4         0        1
  OR2T33 WILD-TYPE        1        4        11        47         2        2
D223V3, multiclass
                  vv
clus               T1+T2 T3+T4
  OR2T33 MUTATED       0     5
  OR2T33 WILD-TYPE     6    61
D223V4, multiclass
       clus
vv      OR2T33 MUTATED OR2T33 WILD-TYPE
  T1+T2              0                6
  T3+T4              5               61
D223V5, binary
                  cls
clus                0  1
  OR2T33 MUTATED    1  4
  OR2T33 WILD-TYPE 16 50
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR2T33 MUTATED      1    4
  OR2T33 WILD-TYPE   16   50
   clus
vv  OR2T33 MUTATED OR2T33 WILD-TYPE
  0              1               16
  1              4               50
                  vv
clus               M0 M1 MX
  OR2T33 MUTATED    2  1  2
  OR2T33 WILD-TYPE 37  2 28
D223V6, multiclass
    clus
vv   OR2T33 MUTATED OR2T33 WILD-TYPE
  M0              2               37
  M1              1                2
  MX              2               28
D223V7, binary
                  cls
clus                0  1
  OR2T33 MUTATED    4  1
  OR2T33 WILD-TYPE 32 35
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR2T33 MUTATED      4    1
  OR2T33 WILD-TYPE   32   35
        clus
vv       OR2T33 MUTATED OR2T33 WILD-TYPE
  FEMALE              4               32
  MALE                1               35
                  vv
clus               PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  OR2T33 MUTATED                                     4
  OR2T33 WILD-TYPE                                  61
                  vv
clus               PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  OR2T33 MUTATED                                       1
  OR2T33 WILD-TYPE                                     3
                  vv
clus               PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  OR2T33 MUTATED                                                  0
  OR2T33 WILD-TYPE                                                2
D223V8, multiclass
                                                  clus
vv                                                 OR2T33 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                           4
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                         1
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA              0
                                                  clus
vv                                                 OR2T33 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                            61
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                           3
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                2
D223V9, continuous
[1] "Remove cluster labels:" "OR2T33 MUTATED"        
clus
  OR2T33 MUTATED OR2T33 WILD-TYPE 
               2               20 
      TCGA-F2-6880       TCGA-FB-A4P5       TCGA-FB-A4P6       TCGA-FB-A5VM 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-FB-A78T       TCGA-FB-A7DR       TCGA-H6-8124       TCGA-H6-A45N 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-H8-A6C1       TCGA-IB-7644       TCGA-IB-7649       TCGA-IB-7885 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-IB-7886       TCGA-IB-7891       TCGA-IB-8126       TCGA-IB-8127 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-IB-A5SS       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
D223V10, continuous
[1] "Remove cluster labels:" "OR2T33 MUTATED"        
clus
  OR2T33 MUTATED OR2T33 WILD-TYPE 
               1               18 
      TCGA-FB-A4P5       TCGA-FB-A4P6       TCGA-FB-A5VM       TCGA-FB-A78T 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-FB-A7DR       TCGA-H6-8124       TCGA-H8-A6C1       TCGA-IB-7644 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-IB-7649       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7891 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-IB-8126       TCGA-IB-8127       TCGA-IB-A5SS       TCGA-IB-A6UG 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-LB-A7SX       TCGA-OE-A75W 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
                  vv
clus               R0 R1 RX
  OR2T33 MUTATED    2  3  0
  OR2T33 WILD-TYPE 40 21  2
D223V11, multiclass
    clus
vv   OR2T33 MUTATED OR2T33 WILD-TYPE
  R0              2               40
  R1              3               21
  RX              0                2
D223V12, continuous

Clustering(224) Variable = OR5A1 MUTATION ANALYSIS
D224V1, survival
                 sevent
clus2              0  1
  OR5A1 MUTATED    5  3
  OR5A1 WILD-TYPE 35 26
  OR5A1 MUTATED OR5A1 WILD-TYPE 
              8              61 
  OR5A1 MUTATED OR5A1 WILD-TYPE 
              3              26 
$`OR5A1 MUTATED`
TCGA-F2-6880 TCGA-F2-7276 TCGA-FB-A545 TCGA-H6-8124 TCGA-HZ-A4BH TCGA-IB-7644 
        9.70         7.10        12.66        12.89         6.38        11.41 
TCGA-IB-7651 TCGA-IB-7652 
       19.82        15.65 

$`OR5A1 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-7273 TCGA-F2-A44G TCGA-F2-A44H TCGA-FB-A4P5 TCGA-FB-A4P6 
       10.98        11.84         5.03        19.27         0.13        11.93 
TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR TCGA-FZ-5920 TCGA-FZ-5922 TCGA-FZ-5923 
        2.47         0.03         5.46         2.01        36.20        20.81 
TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7922 
        7.66        13.02         7.89         0.92         0.66         0.13 
TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 
        0.26        12.13        11.87         0.26         0.62         0.79 
TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8636 TCGA-HZ-8638 
        0.69         3.95         0.92         0.53         0.16         2.99 
TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BK TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 
        0.76         0.95         1.51        49.38         4.77        21.90 
TCGA-IB-7649 TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 
       15.35        27.98         4.04         3.62        43.79        15.81 
TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-8127 
       19.66        16.04         3.85        15.98         0.56        17.16 
TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG 
       10.82         9.86         7.20        15.12         0.26         1.35 
TCGA-LB-A7SX TCGA-OE-A75W TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E 
        4.18         3.62         8.12        13.68        16.80        14.14 
TCGA-US-A77J 
       18.67 

  OR5A1 MUTATED OR5A1 WILD-TYPE 
           6.38            0.03 
  OR5A1 MUTATED OR5A1 WILD-TYPE 
          19.82           49.38 
  OR5A1 MUTATED OR5A1 WILD-TYPE 
         12.035           5.460 
[1] "6.4 - 19.8 (12.0)" "0.0 - 49.4 (5.5)" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"OR5A1 WILD-TYPE"   "OR5A1 MUTATED" "OR5A1 WILD-TYPE"   "OR5A1 MUTATED" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
  "OR5A1 MUTATED" "OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE"   "OR5A1 MUTATED" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
  "OR5A1 MUTATED" "OR5A1 WILD-TYPE"   "OR5A1 MUTATED" "OR5A1 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE"   "OR5A1 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
  "OR5A1 MUTATED" "OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" 
     TCGA-US-A77J 
"OR5A1 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"OR5A1 WILD-TYPE"   "OR5A1 MUTATED" "OR5A1 WILD-TYPE"   "OR5A1 MUTATED" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
  "OR5A1 MUTATED" "OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE"   "OR5A1 MUTATED" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
  "OR5A1 MUTATED" "OR5A1 WILD-TYPE"   "OR5A1 MUTATED" "OR5A1 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE"   "OR5A1 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
  "OR5A1 MUTATED" "OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" 
     TCGA-US-A77J 
"OR5A1 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"OR5A1 WILD-TYPE"   "OR5A1 MUTATED" "OR5A1 WILD-TYPE"   "OR5A1 MUTATED" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
  "OR5A1 MUTATED" "OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE"   "OR5A1 MUTATED" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
  "OR5A1 MUTATED" "OR5A1 WILD-TYPE"   "OR5A1 MUTATED" "OR5A1 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE"   "OR5A1 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
  "OR5A1 MUTATED" "OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" "OR5A1 WILD-TYPE" 
     TCGA-US-A77J 
"OR5A1 WILD-TYPE" 
[1] "hr=" "1.2"
D224V2, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  OR5A1 MUTATED          0        0         0         7         0        1
  OR5A1 WILD-TYPE        1        4        11        44         2        2
D224V3, multiclass
                 vv
clus              T1+T2 T3+T4
  OR5A1 MUTATED       0     8
  OR5A1 WILD-TYPE     6    58
D224V4, multiclass
       clus
vv      OR5A1 MUTATED OR5A1 WILD-TYPE
  T1+T2             0               6
  T3+T4             8              58
D224V5, binary
                 cls
clus               0  1
  OR5A1 MUTATED    0  8
  OR5A1 WILD-TYPE 17 46
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR5A1 MUTATED      0    8
  OR5A1 WILD-TYPE   17   46
   clus
vv  OR5A1 MUTATED OR5A1 WILD-TYPE
  0             0              17
  1             8              46
                 vv
clus              M0 M1 MX
  OR5A1 MUTATED    6  1  1
  OR5A1 WILD-TYPE 33  2 29
D224V6, multiclass
    clus
vv   OR5A1 MUTATED OR5A1 WILD-TYPE
  M0             6              33
  M1             1               2
  MX             1              29
D224V7, binary
                 cls
clus               0  1
  OR5A1 MUTATED    5  3
  OR5A1 WILD-TYPE 31 33
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR5A1 MUTATED      5    3
  OR5A1 WILD-TYPE   31   33
        clus
vv       OR5A1 MUTATED OR5A1 WILD-TYPE
  FEMALE             5              31
  MALE               3              33
                 vv
clus              PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  OR5A1 MUTATED                                     8
  OR5A1 WILD-TYPE                                  57
                 vv
clus              PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  OR5A1 MUTATED                                       0
  OR5A1 WILD-TYPE                                     4
                 vv
clus              PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  OR5A1 MUTATED                                                  0
  OR5A1 WILD-TYPE                                                2
D224V8, multiclass
                                                  clus
vv                                                 OR5A1 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                          8
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                        0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA             0
                                                  clus
vv                                                 OR5A1 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                           57
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                          4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA               2
D224V9, continuous
D224V10, continuous
                 vv
clus              R0 R1 RX
  OR5A1 MUTATED    4  3  0
  OR5A1 WILD-TYPE 38 21  2
D224V11, multiclass
    clus
vv   OR5A1 MUTATED OR5A1 WILD-TYPE
  R0             4              38
  R1             3              21
  RX             0               2
D224V12, continuous

Clustering(225) Variable = RBMXL1 MUTATION ANALYSIS
D225V1, survival
                  sevent
clus2               0  1
  RBMXL1 MUTATED    2  2
  RBMXL1 WILD-TYPE 38 27
  RBMXL1 MUTATED RBMXL1 WILD-TYPE 
               4               65 
  RBMXL1 MUTATED RBMXL1 WILD-TYPE 
               2               27 
$`RBMXL1 MUTATED`
TCGA-F2-7273 TCGA-F2-7276 TCGA-HZ-8315 TCGA-HZ-A4BK 
       11.84         7.10         0.92         1.51 

$`RBMXL1 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-A44G TCGA-F2-A44H TCGA-FB-A4P5 TCGA-FB-A4P6 
       10.98         9.70         5.03        19.27         0.13        11.93 
TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR TCGA-FZ-5920 TCGA-FZ-5922 
       12.66         2.47         0.03         5.46         2.01        36.20 
TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7289 TCGA-HZ-7918 
       20.81        12.89         7.66        13.02         7.89         0.92 
TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 
        0.66         0.13         0.26        12.13        11.87         0.26 
TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8317 TCGA-HZ-8636 
        0.62         0.79         0.69         3.95         0.53         0.16 
TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-IB-7644 TCGA-IB-7645 
        2.99         0.76         0.95         6.38        11.41        49.38 
TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7651 TCGA-IB-7652 TCGA-IB-7885 
        4.77        21.90        15.35        19.82        15.65        27.98 
TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 
        4.04         3.62        43.79        15.81        19.66        16.04 
TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP 
        3.85        15.98         0.56        17.16        10.82         9.86 
TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W 
        7.20        15.12         0.26         1.35         4.18         3.62 
TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
        8.12        13.68        16.80        14.14        18.67 

  RBMXL1 MUTATED RBMXL1 WILD-TYPE 
            0.92             0.03 
  RBMXL1 MUTATED RBMXL1 WILD-TYPE 
           11.84            49.38 
  RBMXL1 MUTATED RBMXL1 WILD-TYPE 
           4.305            7.890 
[1] "0.9 - 11.8 (4.3)" "0.0 - 49.4 (7.9)"
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
"RBMXL1 WILD-TYPE" "RBMXL1 WILD-TYPE"   "RBMXL1 MUTATED"   "RBMXL1 MUTATED" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"RBMXL1 WILD-TYPE" "RBMXL1 WILD-TYPE" "RBMXL1 WILD-TYPE" "RBMXL1 WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
"RBMXL1 WILD-TYPE" "RBMXL1 WILD-TYPE" "RBMXL1 WILD-TYPE" "RBMXL1 WILD-TYPE" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"RBMXL1 WILD-TYPE" "RBMXL1 WILD-TYPE" "RBMXL1 WILD-TYPE" "RBMXL1 WILD-TYPE" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
"RBMXL1 WILD-TYPE" "RBMXL1 WILD-TYPE" "RBMXL1 WILD-TYPE" "RBMXL1 WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
"RBMXL1 WILD-TYPE" "RBMXL1 WILD-TYPE" "RBMXL1 WILD-TYPE" "RBMXL1 WILD-TYPE" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"RBMXL1 WILD-TYPE" "RBMXL1 WILD-TYPE" "RBMXL1 WILD-TYPE" "RBMXL1 WILD-TYPE" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
"RBMXL1 WILD-TYPE" "RBMXL1 WILD-TYPE"   "RBMXL1 MUTATED" "RBMXL1 WILD-TYPE" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
"RBMXL1 WILD-TYPE" "RBMXL1 WILD-TYPE" "RBMXL1 WILD-TYPE" "RBMXL1 WILD-TYPE" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
"RBMXL1 WILD-TYPE"   "RBMXL1 MUTATED" "RBMXL1 WILD-TYPE" "RBMXL1 WILD-TYPE" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
"RBMXL1 WILD-TYPE" "RBMXL1 WILD-TYPE" "RBMXL1 WILD-TYPE" "RBMXL1 WILD-TYPE" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
"RBMXL1 WILD-TYPE" "RBMXL1 WILD-TYPE" "RBMXL1 WILD-TYPE" "RBMXL1 WILD-TYPE" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
"RBMXL1 WILD-TYPE" "RBMXL1 WILD-TYPE" "RBMXL1 WILD-TYPE" "RBMXL1 WILD-TYPE" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
"RBMXL1 WILD-TYPE" "RBMXL1 WILD-TYPE" "RBMXL1 WILD-TYPE" "RBMXL1 WILD-TYPE" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"RBMXL1 WILD-TYPE" "RBMXL1 WILD-TYPE" "RBMXL1 WILD-TYPE" "RBMXL1 WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"RBMXL1 WILD-TYPE" "RBMXL1 WILD-TYPE" "RBMXL1 WILD-TYPE" "RBMXL1 WILD-TYPE" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
"RBMXL1 WILD-TYPE" "RBMXL1 WILD-TYPE" "RBMXL1 WILD-TYPE" "RBMXL1 WILD-TYPE" 
      TCGA-US-A77J 
"RBMXL1 WILD-TYPE" 
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
"RBMXL1 WILD-TYPE" "RBMXL1 WILD-TYPE"   "RBMXL1 MUTATED"   "RBMXL1 MUTATED" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"RBMXL1 WILD-TYPE" "RBMXL1 WILD-TYPE" "RBMXL1 WILD-TYPE" "RBMXL1 WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
"RBMXL1 WILD-TYPE" "RBMXL1 WILD-TYPE" "RBMXL1 WILD-TYPE" "RBMXL1 WILD-TYPE" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"RBMXL1 WILD-TYPE" "RBMXL1 WILD-TYPE" "RBMXL1 WILD-TYPE" "RBMXL1 WILD-TYPE" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
"RBMXL1 WILD-TYPE" "RBMXL1 WILD-TYPE" "RBMXL1 WILD-TYPE" "RBMXL1 WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
"RBMXL1 WILD-TYPE" "RBMXL1 WILD-TYPE" "RBMXL1 WILD-TYPE" "RBMXL1 WILD-TYPE" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"RBMXL1 WILD-TYPE" "RBMXL1 WILD-TYPE" "RBMXL1 WILD-TYPE" "RBMXL1 WILD-TYPE" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
"RBMXL1 WILD-TYPE" "RBMXL1 WILD-TYPE"   "RBMXL1 MUTATED" "RBMXL1 WILD-TYPE" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
"RBMXL1 WILD-TYPE" "RBMXL1 WILD-TYPE" "RBMXL1 WILD-TYPE" "RBMXL1 WILD-TYPE" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
"RBMXL1 WILD-TYPE"   "RBMXL1 MUTATED" "RBMXL1 WILD-TYPE" "RBMXL1 WILD-TYPE" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
"RBMXL1 WILD-TYPE" "RBMXL1 WILD-TYPE" "RBMXL1 WILD-TYPE" "RBMXL1 WILD-TYPE" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
"RBMXL1 WILD-TYPE" "RBMXL1 WILD-TYPE" "RBMXL1 WILD-TYPE" "RBMXL1 WILD-TYPE" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
"RBMXL1 WILD-TYPE" "RBMXL1 WILD-TYPE" "RBMXL1 WILD-TYPE" "RBMXL1 WILD-TYPE" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
"RBMXL1 WILD-TYPE" "RBMXL1 WILD-TYPE" "RBMXL1 WILD-TYPE" "RBMXL1 WILD-TYPE" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"RBMXL1 WILD-TYPE" "RBMXL1 WILD-TYPE" "RBMXL1 WILD-TYPE" "RBMXL1 WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"RBMXL1 WILD-TYPE" "RBMXL1 WILD-TYPE" "RBMXL1 WILD-TYPE" "RBMXL1 WILD-TYPE" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
"RBMXL1 WILD-TYPE" "RBMXL1 WILD-TYPE" "RBMXL1 WILD-TYPE" "RBMXL1 WILD-TYPE" 
      TCGA-US-A77J 
"RBMXL1 WILD-TYPE" 
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
"RBMXL1 WILD-TYPE" "RBMXL1 WILD-TYPE"   "RBMXL1 MUTATED"   "RBMXL1 MUTATED" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"RBMXL1 WILD-TYPE" "RBMXL1 WILD-TYPE" "RBMXL1 WILD-TYPE" "RBMXL1 WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
"RBMXL1 WILD-TYPE" "RBMXL1 WILD-TYPE" "RBMXL1 WILD-TYPE" "RBMXL1 WILD-TYPE" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"RBMXL1 WILD-TYPE" "RBMXL1 WILD-TYPE" "RBMXL1 WILD-TYPE" "RBMXL1 WILD-TYPE" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
"RBMXL1 WILD-TYPE" "RBMXL1 WILD-TYPE" "RBMXL1 WILD-TYPE" "RBMXL1 WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
"RBMXL1 WILD-TYPE" "RBMXL1 WILD-TYPE" "RBMXL1 WILD-TYPE" "RBMXL1 WILD-TYPE" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"RBMXL1 WILD-TYPE" "RBMXL1 WILD-TYPE" "RBMXL1 WILD-TYPE" "RBMXL1 WILD-TYPE" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
"RBMXL1 WILD-TYPE" "RBMXL1 WILD-TYPE"   "RBMXL1 MUTATED" "RBMXL1 WILD-TYPE" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
"RBMXL1 WILD-TYPE" "RBMXL1 WILD-TYPE" "RBMXL1 WILD-TYPE" "RBMXL1 WILD-TYPE" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
"RBMXL1 WILD-TYPE"   "RBMXL1 MUTATED" "RBMXL1 WILD-TYPE" "RBMXL1 WILD-TYPE" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
"RBMXL1 WILD-TYPE" "RBMXL1 WILD-TYPE" "RBMXL1 WILD-TYPE" "RBMXL1 WILD-TYPE" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
"RBMXL1 WILD-TYPE" "RBMXL1 WILD-TYPE" "RBMXL1 WILD-TYPE" "RBMXL1 WILD-TYPE" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
"RBMXL1 WILD-TYPE" "RBMXL1 WILD-TYPE" "RBMXL1 WILD-TYPE" "RBMXL1 WILD-TYPE" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
"RBMXL1 WILD-TYPE" "RBMXL1 WILD-TYPE" "RBMXL1 WILD-TYPE" "RBMXL1 WILD-TYPE" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"RBMXL1 WILD-TYPE" "RBMXL1 WILD-TYPE" "RBMXL1 WILD-TYPE" "RBMXL1 WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"RBMXL1 WILD-TYPE" "RBMXL1 WILD-TYPE" "RBMXL1 WILD-TYPE" "RBMXL1 WILD-TYPE" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
"RBMXL1 WILD-TYPE" "RBMXL1 WILD-TYPE" "RBMXL1 WILD-TYPE" "RBMXL1 WILD-TYPE" 
      TCGA-US-A77J 
"RBMXL1 WILD-TYPE" 
[1] "hr=" "3.4"
D225V2, continuous
                  vv
clus               STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  RBMXL1 MUTATED          0        0         1         3         0        0
  RBMXL1 WILD-TYPE        1        4        10        48         2        3
D225V3, multiclass
                  vv
clus               T1+T2 T3+T4
  RBMXL1 MUTATED       0     4
  RBMXL1 WILD-TYPE     6    62
D225V4, multiclass
       clus
vv      RBMXL1 MUTATED RBMXL1 WILD-TYPE
  T1+T2              0                6
  T3+T4              4               62
D225V5, binary
                  cls
clus                0  1
  RBMXL1 MUTATED    1  3
  RBMXL1 WILD-TYPE 16 51
[1] "tbl2"
                  cls
clus               [,1] [,2]
  RBMXL1 MUTATED      1    3
  RBMXL1 WILD-TYPE   16   51
   clus
vv  RBMXL1 MUTATED RBMXL1 WILD-TYPE
  0              1               16
  1              3               51
                  vv
clus               M0 M1 MX
  RBMXL1 MUTATED    2  0  2
  RBMXL1 WILD-TYPE 37  3 28
D225V6, multiclass
    clus
vv   RBMXL1 MUTATED RBMXL1 WILD-TYPE
  M0              2               37
  M1              0                3
  MX              2               28
D225V7, binary
                  cls
clus                0  1
  RBMXL1 MUTATED    1  3
  RBMXL1 WILD-TYPE 35 33
[1] "tbl2"
                  cls
clus               [,1] [,2]
  RBMXL1 MUTATED      1    3
  RBMXL1 WILD-TYPE   35   33
        clus
vv       RBMXL1 MUTATED RBMXL1 WILD-TYPE
  FEMALE              1               35
  MALE                3               33
                  vv
clus               PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  RBMXL1 MUTATED                                     3
  RBMXL1 WILD-TYPE                                  62
                  vv
clus               PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  RBMXL1 MUTATED                                       1
  RBMXL1 WILD-TYPE                                     3
                  vv
clus               PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  RBMXL1 MUTATED                                                  0
  RBMXL1 WILD-TYPE                                                2
D225V8, multiclass
                                                  clus
vv                                                 RBMXL1 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                           3
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                         1
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA              0
                                                  clus
vv                                                 RBMXL1 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                            62
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                           3
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                2
D225V9, continuous
D225V10, continuous
                  vv
clus               R0 R1 RX
  RBMXL1 MUTATED    1  3  0
  RBMXL1 WILD-TYPE 41 21  2
D225V11, multiclass
    clus
vv   RBMXL1 MUTATED RBMXL1 WILD-TYPE
  R0              1               41
  R1              3               21
  RX              0                2
D225V12, continuous

Clustering(226) Variable = CD93 MUTATION ANALYSIS
D226V1, survival
                sevent
clus2             0  1
  CD93 MUTATED    3  4
  CD93 WILD-TYPE 37 25
  CD93 MUTATED CD93 WILD-TYPE 
             7             62 
  CD93 MUTATED CD93 WILD-TYPE 
             4             25 
$`CD93 MUTATED`
TCGA-H6-8124 TCGA-HZ-7926 TCGA-HZ-8001 TCGA-IB-7651 TCGA-IB-7888 TCGA-IB-7890 
       12.89         0.26         0.62        19.82        43.79        19.66 
TCGA-IB-7893 
        3.85 

$`CD93 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P5 TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR 
        0.13        11.93        12.66         2.47         0.03         5.46 
TCGA-FZ-5920 TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7289 
        2.01        36.20        20.81         7.66        13.02         7.89 
TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 
        0.92         0.66         0.13         0.26        12.13        11.87 
TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8636 
        0.79         0.69         3.95         0.92         0.53         0.16 
TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 
        2.99         0.76         0.95         6.38         1.51        11.41 
TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7652 TCGA-IB-7885 
       49.38         4.77        21.90        15.35        15.65        27.98 
TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7889 TCGA-IB-7891 TCGA-IB-7897 TCGA-IB-8126 
        4.04         3.62        15.81        16.04        15.98         0.56 
TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST 
       17.16        10.82         9.86         7.20        15.12         0.26 
TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 
        1.35         4.18         3.62         8.12        13.68        16.80 
TCGA-US-A77E TCGA-US-A77J 
       14.14        18.67 

  CD93 MUTATED CD93 WILD-TYPE 
          0.26           0.03 
  CD93 MUTATED CD93 WILD-TYPE 
         43.79          49.38 
  CD93 MUTATED CD93 WILD-TYPE 
         12.89           7.43 
[1] "0.3 - 43.8 (12.9)" "0.0 - 49.4 (7.4)" 
    TCGA-F2-6879     TCGA-F2-6880     TCGA-F2-7273     TCGA-F2-7276 
"CD93 WILD-TYPE" "CD93 WILD-TYPE" "CD93 WILD-TYPE" "CD93 WILD-TYPE" 
    TCGA-F2-A44G     TCGA-F2-A44H     TCGA-FB-A4P5     TCGA-FB-A4P6 
"CD93 WILD-TYPE" "CD93 WILD-TYPE" "CD93 WILD-TYPE" "CD93 WILD-TYPE" 
    TCGA-FB-A545     TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-FB-A7DR 
"CD93 WILD-TYPE" "CD93 WILD-TYPE" "CD93 WILD-TYPE" "CD93 WILD-TYPE" 
    TCGA-FZ-5920     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-H6-8124 
"CD93 WILD-TYPE" "CD93 WILD-TYPE" "CD93 WILD-TYPE"   "CD93 MUTATED" 
    TCGA-H6-A45N     TCGA-H8-A6C1     TCGA-HZ-7289     TCGA-HZ-7918 
"CD93 WILD-TYPE" "CD93 WILD-TYPE" "CD93 WILD-TYPE" "CD93 WILD-TYPE" 
    TCGA-HZ-7919     TCGA-HZ-7922     TCGA-HZ-7923     TCGA-HZ-7924 
"CD93 WILD-TYPE" "CD93 WILD-TYPE" "CD93 WILD-TYPE" "CD93 WILD-TYPE" 
    TCGA-HZ-7925     TCGA-HZ-7926     TCGA-HZ-8001     TCGA-HZ-8002 
"CD93 WILD-TYPE"   "CD93 MUTATED"   "CD93 MUTATED" "CD93 WILD-TYPE" 
    TCGA-HZ-8003     TCGA-HZ-8005     TCGA-HZ-8315     TCGA-HZ-8317 
"CD93 WILD-TYPE" "CD93 WILD-TYPE" "CD93 WILD-TYPE" "CD93 WILD-TYPE" 
    TCGA-HZ-8636     TCGA-HZ-8638     TCGA-HZ-A49G     TCGA-HZ-A49H 
"CD93 WILD-TYPE" "CD93 WILD-TYPE" "CD93 WILD-TYPE" "CD93 WILD-TYPE" 
    TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-IB-7644     TCGA-IB-7645 
"CD93 WILD-TYPE" "CD93 WILD-TYPE" "CD93 WILD-TYPE" "CD93 WILD-TYPE" 
    TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7651 
"CD93 WILD-TYPE" "CD93 WILD-TYPE" "CD93 WILD-TYPE"   "CD93 MUTATED" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887 
"CD93 WILD-TYPE" "CD93 WILD-TYPE" "CD93 WILD-TYPE" "CD93 WILD-TYPE" 
    TCGA-IB-7888     TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891 
  "CD93 MUTATED" "CD93 WILD-TYPE"   "CD93 MUTATED" "CD93 WILD-TYPE" 
    TCGA-IB-7893     TCGA-IB-7897     TCGA-IB-8126     TCGA-IB-8127 
  "CD93 MUTATED" "CD93 WILD-TYPE" "CD93 WILD-TYPE" "CD93 WILD-TYPE" 
    TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS 
"CD93 WILD-TYPE" "CD93 WILD-TYPE" "CD93 WILD-TYPE" "CD93 WILD-TYPE" 
    TCGA-IB-A5ST     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
"CD93 WILD-TYPE" "CD93 WILD-TYPE" "CD93 WILD-TYPE" "CD93 WILD-TYPE" 
    TCGA-PZ-A5RE     TCGA-Q3-A5QY     TCGA-US-A779     TCGA-US-A77E 
"CD93 WILD-TYPE" "CD93 WILD-TYPE" "CD93 WILD-TYPE" "CD93 WILD-TYPE" 
    TCGA-US-A77J 
"CD93 WILD-TYPE" 
    TCGA-F2-6879     TCGA-F2-6880     TCGA-F2-7273     TCGA-F2-7276 
"CD93 WILD-TYPE" "CD93 WILD-TYPE" "CD93 WILD-TYPE" "CD93 WILD-TYPE" 
    TCGA-F2-A44G     TCGA-F2-A44H     TCGA-FB-A4P5     TCGA-FB-A4P6 
"CD93 WILD-TYPE" "CD93 WILD-TYPE" "CD93 WILD-TYPE" "CD93 WILD-TYPE" 
    TCGA-FB-A545     TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-FB-A7DR 
"CD93 WILD-TYPE" "CD93 WILD-TYPE" "CD93 WILD-TYPE" "CD93 WILD-TYPE" 
    TCGA-FZ-5920     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-H6-8124 
"CD93 WILD-TYPE" "CD93 WILD-TYPE" "CD93 WILD-TYPE"   "CD93 MUTATED" 
    TCGA-H6-A45N     TCGA-H8-A6C1     TCGA-HZ-7289     TCGA-HZ-7918 
"CD93 WILD-TYPE" "CD93 WILD-TYPE" "CD93 WILD-TYPE" "CD93 WILD-TYPE" 
    TCGA-HZ-7919     TCGA-HZ-7922     TCGA-HZ-7923     TCGA-HZ-7924 
"CD93 WILD-TYPE" "CD93 WILD-TYPE" "CD93 WILD-TYPE" "CD93 WILD-TYPE" 
    TCGA-HZ-7925     TCGA-HZ-7926     TCGA-HZ-8001     TCGA-HZ-8002 
"CD93 WILD-TYPE"   "CD93 MUTATED"   "CD93 MUTATED" "CD93 WILD-TYPE" 
    TCGA-HZ-8003     TCGA-HZ-8005     TCGA-HZ-8315     TCGA-HZ-8317 
"CD93 WILD-TYPE" "CD93 WILD-TYPE" "CD93 WILD-TYPE" "CD93 WILD-TYPE" 
    TCGA-HZ-8636     TCGA-HZ-8638     TCGA-HZ-A49G     TCGA-HZ-A49H 
"CD93 WILD-TYPE" "CD93 WILD-TYPE" "CD93 WILD-TYPE" "CD93 WILD-TYPE" 
    TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-IB-7644     TCGA-IB-7645 
"CD93 WILD-TYPE" "CD93 WILD-TYPE" "CD93 WILD-TYPE" "CD93 WILD-TYPE" 
    TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7651 
"CD93 WILD-TYPE" "CD93 WILD-TYPE" "CD93 WILD-TYPE"   "CD93 MUTATED" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887 
"CD93 WILD-TYPE" "CD93 WILD-TYPE" "CD93 WILD-TYPE" "CD93 WILD-TYPE" 
    TCGA-IB-7888     TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891 
  "CD93 MUTATED" "CD93 WILD-TYPE"   "CD93 MUTATED" "CD93 WILD-TYPE" 
    TCGA-IB-7893     TCGA-IB-7897     TCGA-IB-8126     TCGA-IB-8127 
  "CD93 MUTATED" "CD93 WILD-TYPE" "CD93 WILD-TYPE" "CD93 WILD-TYPE" 
    TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS 
"CD93 WILD-TYPE" "CD93 WILD-TYPE" "CD93 WILD-TYPE" "CD93 WILD-TYPE" 
    TCGA-IB-A5ST     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
"CD93 WILD-TYPE" "CD93 WILD-TYPE" "CD93 WILD-TYPE" "CD93 WILD-TYPE" 
    TCGA-PZ-A5RE     TCGA-Q3-A5QY     TCGA-US-A779     TCGA-US-A77E 
"CD93 WILD-TYPE" "CD93 WILD-TYPE" "CD93 WILD-TYPE" "CD93 WILD-TYPE" 
    TCGA-US-A77J 
"CD93 WILD-TYPE" 
    TCGA-F2-6879     TCGA-F2-6880     TCGA-F2-7273     TCGA-F2-7276 
"CD93 WILD-TYPE" "CD93 WILD-TYPE" "CD93 WILD-TYPE" "CD93 WILD-TYPE" 
    TCGA-F2-A44G     TCGA-F2-A44H     TCGA-FB-A4P5     TCGA-FB-A4P6 
"CD93 WILD-TYPE" "CD93 WILD-TYPE" "CD93 WILD-TYPE" "CD93 WILD-TYPE" 
    TCGA-FB-A545     TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-FB-A7DR 
"CD93 WILD-TYPE" "CD93 WILD-TYPE" "CD93 WILD-TYPE" "CD93 WILD-TYPE" 
    TCGA-FZ-5920     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-H6-8124 
"CD93 WILD-TYPE" "CD93 WILD-TYPE" "CD93 WILD-TYPE"   "CD93 MUTATED" 
    TCGA-H6-A45N     TCGA-H8-A6C1     TCGA-HZ-7289     TCGA-HZ-7918 
"CD93 WILD-TYPE" "CD93 WILD-TYPE" "CD93 WILD-TYPE" "CD93 WILD-TYPE" 
    TCGA-HZ-7919     TCGA-HZ-7922     TCGA-HZ-7923     TCGA-HZ-7924 
"CD93 WILD-TYPE" "CD93 WILD-TYPE" "CD93 WILD-TYPE" "CD93 WILD-TYPE" 
    TCGA-HZ-7925     TCGA-HZ-7926     TCGA-HZ-8001     TCGA-HZ-8002 
"CD93 WILD-TYPE"   "CD93 MUTATED"   "CD93 MUTATED" "CD93 WILD-TYPE" 
    TCGA-HZ-8003     TCGA-HZ-8005     TCGA-HZ-8315     TCGA-HZ-8317 
"CD93 WILD-TYPE" "CD93 WILD-TYPE" "CD93 WILD-TYPE" "CD93 WILD-TYPE" 
    TCGA-HZ-8636     TCGA-HZ-8638     TCGA-HZ-A49G     TCGA-HZ-A49H 
"CD93 WILD-TYPE" "CD93 WILD-TYPE" "CD93 WILD-TYPE" "CD93 WILD-TYPE" 
    TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-IB-7644     TCGA-IB-7645 
"CD93 WILD-TYPE" "CD93 WILD-TYPE" "CD93 WILD-TYPE" "CD93 WILD-TYPE" 
    TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7651 
"CD93 WILD-TYPE" "CD93 WILD-TYPE" "CD93 WILD-TYPE"   "CD93 MUTATED" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887 
"CD93 WILD-TYPE" "CD93 WILD-TYPE" "CD93 WILD-TYPE" "CD93 WILD-TYPE" 
    TCGA-IB-7888     TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891 
  "CD93 MUTATED" "CD93 WILD-TYPE"   "CD93 MUTATED" "CD93 WILD-TYPE" 
    TCGA-IB-7893     TCGA-IB-7897     TCGA-IB-8126     TCGA-IB-8127 
  "CD93 MUTATED" "CD93 WILD-TYPE" "CD93 WILD-TYPE" "CD93 WILD-TYPE" 
    TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS 
"CD93 WILD-TYPE" "CD93 WILD-TYPE" "CD93 WILD-TYPE" "CD93 WILD-TYPE" 
    TCGA-IB-A5ST     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
"CD93 WILD-TYPE" "CD93 WILD-TYPE" "CD93 WILD-TYPE" "CD93 WILD-TYPE" 
    TCGA-PZ-A5RE     TCGA-Q3-A5QY     TCGA-US-A779     TCGA-US-A77E 
"CD93 WILD-TYPE" "CD93 WILD-TYPE" "CD93 WILD-TYPE" "CD93 WILD-TYPE" 
    TCGA-US-A77J 
"CD93 WILD-TYPE" 
[1] "hr=" "1.3"
D226V2, continuous
                vv
clus             STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  CD93 MUTATED          0        1         2         3         1        0
  CD93 WILD-TYPE        1        3         9        48         1        3
D226V3, multiclass
                vv
clus             T1+T2 T3+T4
  CD93 MUTATED       1     6
  CD93 WILD-TYPE     5    60
D226V4, multiclass
       clus
vv      CD93 MUTATED CD93 WILD-TYPE
  T1+T2            1              5
  T3+T4            6             60
D226V5, binary
                cls
clus              0  1
  CD93 MUTATED    4  3
  CD93 WILD-TYPE 13 51
[1] "tbl2"
                cls
clus             [,1] [,2]
  CD93 MUTATED      4    3
  CD93 WILD-TYPE   13   51
   clus
vv  CD93 MUTATED CD93 WILD-TYPE
  0            4             13
  1            3             51
                vv
clus             M0 M1 MX
  CD93 MUTATED    5  0  2
  CD93 WILD-TYPE 34  3 28
D226V6, multiclass
    clus
vv   CD93 MUTATED CD93 WILD-TYPE
  M0            5             34
  M1            0              3
  MX            2             28
D226V7, binary
                cls
clus              0  1
  CD93 MUTATED    3  4
  CD93 WILD-TYPE 33 32
[1] "tbl2"
                cls
clus             [,1] [,2]
  CD93 MUTATED      3    4
  CD93 WILD-TYPE   33   32
        clus
vv       CD93 MUTATED CD93 WILD-TYPE
  FEMALE            3             33
  MALE              4             32
                vv
clus             PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  CD93 MUTATED                                     7
  CD93 WILD-TYPE                                  58
                vv
clus             PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  CD93 MUTATED                                       0
  CD93 WILD-TYPE                                     4
                vv
clus             PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  CD93 MUTATED                                                  0
  CD93 WILD-TYPE                                                2
D226V8, multiclass
                                                  clus
vv                                                 CD93 MUTATED CD93 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                         7             58
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                       0              4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA            0              2
D226V9, continuous
[1] "Remove cluster labels:" "CD93 MUTATED"          
clus
  CD93 MUTATED CD93 WILD-TYPE 
             2             20 
    TCGA-F2-6880     TCGA-FB-A4P5     TCGA-FB-A4P6     TCGA-FB-A5VM 
"CD93 WILD-TYPE" "CD93 WILD-TYPE" "CD93 WILD-TYPE" "CD93 WILD-TYPE" 
    TCGA-FB-A78T     TCGA-FB-A7DR     TCGA-H6-A45N     TCGA-H8-A6C1 
"CD93 WILD-TYPE" "CD93 WILD-TYPE" "CD93 WILD-TYPE" "CD93 WILD-TYPE" 
    TCGA-IB-7644     TCGA-IB-7649     TCGA-IB-7885     TCGA-IB-7886 
"CD93 WILD-TYPE" "CD93 WILD-TYPE" "CD93 WILD-TYPE" "CD93 WILD-TYPE" 
    TCGA-IB-7887     TCGA-IB-7891     TCGA-IB-8126     TCGA-IB-8127 
"CD93 WILD-TYPE" "CD93 WILD-TYPE" "CD93 WILD-TYPE" "CD93 WILD-TYPE" 
    TCGA-IB-A5SS     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
"CD93 WILD-TYPE" "CD93 WILD-TYPE" "CD93 WILD-TYPE" "CD93 WILD-TYPE" 
D226V10, continuous
[1] "Remove cluster labels:" "CD93 MUTATED"          
clus
  CD93 MUTATED CD93 WILD-TYPE 
             2             17 
    TCGA-FB-A4P5     TCGA-FB-A4P6     TCGA-FB-A5VM     TCGA-FB-A78T 
"CD93 WILD-TYPE" "CD93 WILD-TYPE" "CD93 WILD-TYPE" "CD93 WILD-TYPE" 
    TCGA-FB-A7DR     TCGA-H8-A6C1     TCGA-IB-7644     TCGA-IB-7649 
"CD93 WILD-TYPE" "CD93 WILD-TYPE" "CD93 WILD-TYPE" "CD93 WILD-TYPE" 
    TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7891     TCGA-IB-8126 
"CD93 WILD-TYPE" "CD93 WILD-TYPE" "CD93 WILD-TYPE" "CD93 WILD-TYPE" 
    TCGA-IB-8127     TCGA-IB-A5SS     TCGA-IB-A6UG     TCGA-LB-A7SX 
"CD93 WILD-TYPE" "CD93 WILD-TYPE" "CD93 WILD-TYPE" "CD93 WILD-TYPE" 
    TCGA-OE-A75W 
"CD93 WILD-TYPE" 
                vv
clus             R0 R1 RX
  CD93 MUTATED    6  0  1
  CD93 WILD-TYPE 36 24  1
D226V11, multiclass
    clus
vv   CD93 MUTATED CD93 WILD-TYPE
  R0            6             36
  R1            0             24
  RX            1              1
D226V12, continuous

Clustering(227) Variable = HVCN1 MUTATION ANALYSIS
D227V1, survival
                 sevent
clus2              0  1
  HVCN1 MUTATED    1  2
  HVCN1 WILD-TYPE 39 27
  HVCN1 MUTATED HVCN1 WILD-TYPE 
              3              66 
  HVCN1 MUTATED HVCN1 WILD-TYPE 
              2              27 
$`HVCN1 MUTATED`
TCGA-HZ-8001 TCGA-IB-7893 TCGA-IB-7897 
        0.62         3.85        15.98 

$`HVCN1 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P5 TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR 
        0.13        11.93        12.66         2.47         0.03         5.46 
TCGA-FZ-5920 TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 
        2.01        36.20        20.81        12.89         7.66        13.02 
TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 
        7.89         0.92         0.66         0.13         0.26        12.13 
TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 
       11.87         0.26         0.79         0.69         3.95         0.92 
TCGA-HZ-8317 TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH 
        0.53         0.16         2.99         0.76         0.95         6.38 
TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 
        1.51        11.41        49.38         4.77        21.90        15.35 
TCGA-IB-7651 TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7888 
       19.82        15.65        27.98         4.04         3.62        43.79 
TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO 
       15.81        19.66        16.04         0.56        17.16        10.82 
TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX 
        9.86         7.20        15.12         0.26         1.35         4.18 
TCGA-OE-A75W TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
        3.62         8.12        13.68        16.80        14.14        18.67 

  HVCN1 MUTATED HVCN1 WILD-TYPE 
           0.62            0.03 
  HVCN1 MUTATED HVCN1 WILD-TYPE 
          15.98           49.38 
  HVCN1 MUTATED HVCN1 WILD-TYPE 
          3.850           7.775 
[1] "0.6 - 16.0 (3.9)" "0.0 - 49.4 (7.8)"
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"HVCN1 WILD-TYPE" "HVCN1 WILD-TYPE" "HVCN1 WILD-TYPE" "HVCN1 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"HVCN1 WILD-TYPE" "HVCN1 WILD-TYPE" "HVCN1 WILD-TYPE" "HVCN1 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"HVCN1 WILD-TYPE" "HVCN1 WILD-TYPE" "HVCN1 WILD-TYPE" "HVCN1 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"HVCN1 WILD-TYPE" "HVCN1 WILD-TYPE" "HVCN1 WILD-TYPE" "HVCN1 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"HVCN1 WILD-TYPE" "HVCN1 WILD-TYPE" "HVCN1 WILD-TYPE" "HVCN1 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"HVCN1 WILD-TYPE" "HVCN1 WILD-TYPE" "HVCN1 WILD-TYPE" "HVCN1 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"HVCN1 WILD-TYPE" "HVCN1 WILD-TYPE"   "HVCN1 MUTATED" "HVCN1 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"HVCN1 WILD-TYPE" "HVCN1 WILD-TYPE" "HVCN1 WILD-TYPE" "HVCN1 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"HVCN1 WILD-TYPE" "HVCN1 WILD-TYPE" "HVCN1 WILD-TYPE" "HVCN1 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"HVCN1 WILD-TYPE" "HVCN1 WILD-TYPE" "HVCN1 WILD-TYPE" "HVCN1 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"HVCN1 WILD-TYPE" "HVCN1 WILD-TYPE" "HVCN1 WILD-TYPE" "HVCN1 WILD-TYPE" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"HVCN1 WILD-TYPE" "HVCN1 WILD-TYPE" "HVCN1 WILD-TYPE" "HVCN1 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"HVCN1 WILD-TYPE" "HVCN1 WILD-TYPE" "HVCN1 WILD-TYPE" "HVCN1 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
  "HVCN1 MUTATED"   "HVCN1 MUTATED" "HVCN1 WILD-TYPE" "HVCN1 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"HVCN1 WILD-TYPE" "HVCN1 WILD-TYPE" "HVCN1 WILD-TYPE" "HVCN1 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"HVCN1 WILD-TYPE" "HVCN1 WILD-TYPE" "HVCN1 WILD-TYPE" "HVCN1 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"HVCN1 WILD-TYPE" "HVCN1 WILD-TYPE" "HVCN1 WILD-TYPE" "HVCN1 WILD-TYPE" 
     TCGA-US-A77J 
"HVCN1 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"HVCN1 WILD-TYPE" "HVCN1 WILD-TYPE" "HVCN1 WILD-TYPE" "HVCN1 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"HVCN1 WILD-TYPE" "HVCN1 WILD-TYPE" "HVCN1 WILD-TYPE" "HVCN1 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"HVCN1 WILD-TYPE" "HVCN1 WILD-TYPE" "HVCN1 WILD-TYPE" "HVCN1 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"HVCN1 WILD-TYPE" "HVCN1 WILD-TYPE" "HVCN1 WILD-TYPE" "HVCN1 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"HVCN1 WILD-TYPE" "HVCN1 WILD-TYPE" "HVCN1 WILD-TYPE" "HVCN1 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"HVCN1 WILD-TYPE" "HVCN1 WILD-TYPE" "HVCN1 WILD-TYPE" "HVCN1 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"HVCN1 WILD-TYPE" "HVCN1 WILD-TYPE"   "HVCN1 MUTATED" "HVCN1 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"HVCN1 WILD-TYPE" "HVCN1 WILD-TYPE" "HVCN1 WILD-TYPE" "HVCN1 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"HVCN1 WILD-TYPE" "HVCN1 WILD-TYPE" "HVCN1 WILD-TYPE" "HVCN1 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"HVCN1 WILD-TYPE" "HVCN1 WILD-TYPE" "HVCN1 WILD-TYPE" "HVCN1 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"HVCN1 WILD-TYPE" "HVCN1 WILD-TYPE" "HVCN1 WILD-TYPE" "HVCN1 WILD-TYPE" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"HVCN1 WILD-TYPE" "HVCN1 WILD-TYPE" "HVCN1 WILD-TYPE" "HVCN1 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"HVCN1 WILD-TYPE" "HVCN1 WILD-TYPE" "HVCN1 WILD-TYPE" "HVCN1 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
  "HVCN1 MUTATED"   "HVCN1 MUTATED" "HVCN1 WILD-TYPE" "HVCN1 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"HVCN1 WILD-TYPE" "HVCN1 WILD-TYPE" "HVCN1 WILD-TYPE" "HVCN1 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"HVCN1 WILD-TYPE" "HVCN1 WILD-TYPE" "HVCN1 WILD-TYPE" "HVCN1 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"HVCN1 WILD-TYPE" "HVCN1 WILD-TYPE" "HVCN1 WILD-TYPE" "HVCN1 WILD-TYPE" 
     TCGA-US-A77J 
"HVCN1 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"HVCN1 WILD-TYPE" "HVCN1 WILD-TYPE" "HVCN1 WILD-TYPE" "HVCN1 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"HVCN1 WILD-TYPE" "HVCN1 WILD-TYPE" "HVCN1 WILD-TYPE" "HVCN1 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"HVCN1 WILD-TYPE" "HVCN1 WILD-TYPE" "HVCN1 WILD-TYPE" "HVCN1 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"HVCN1 WILD-TYPE" "HVCN1 WILD-TYPE" "HVCN1 WILD-TYPE" "HVCN1 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"HVCN1 WILD-TYPE" "HVCN1 WILD-TYPE" "HVCN1 WILD-TYPE" "HVCN1 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"HVCN1 WILD-TYPE" "HVCN1 WILD-TYPE" "HVCN1 WILD-TYPE" "HVCN1 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"HVCN1 WILD-TYPE" "HVCN1 WILD-TYPE"   "HVCN1 MUTATED" "HVCN1 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"HVCN1 WILD-TYPE" "HVCN1 WILD-TYPE" "HVCN1 WILD-TYPE" "HVCN1 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"HVCN1 WILD-TYPE" "HVCN1 WILD-TYPE" "HVCN1 WILD-TYPE" "HVCN1 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"HVCN1 WILD-TYPE" "HVCN1 WILD-TYPE" "HVCN1 WILD-TYPE" "HVCN1 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"HVCN1 WILD-TYPE" "HVCN1 WILD-TYPE" "HVCN1 WILD-TYPE" "HVCN1 WILD-TYPE" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"HVCN1 WILD-TYPE" "HVCN1 WILD-TYPE" "HVCN1 WILD-TYPE" "HVCN1 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"HVCN1 WILD-TYPE" "HVCN1 WILD-TYPE" "HVCN1 WILD-TYPE" "HVCN1 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
  "HVCN1 MUTATED"   "HVCN1 MUTATED" "HVCN1 WILD-TYPE" "HVCN1 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"HVCN1 WILD-TYPE" "HVCN1 WILD-TYPE" "HVCN1 WILD-TYPE" "HVCN1 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"HVCN1 WILD-TYPE" "HVCN1 WILD-TYPE" "HVCN1 WILD-TYPE" "HVCN1 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"HVCN1 WILD-TYPE" "HVCN1 WILD-TYPE" "HVCN1 WILD-TYPE" "HVCN1 WILD-TYPE" 
     TCGA-US-A77J 
"HVCN1 WILD-TYPE" 
[1] "hr=" "2.7"
D227V2, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  HVCN1 MUTATED          0        1         1         1         1        0
  HVCN1 WILD-TYPE        1        3        10        50         1        3
D227V3, multiclass
                 vv
clus              T1+T2 T3+T4
  HVCN1 MUTATED       1     3
  HVCN1 WILD-TYPE     5    63
D227V4, multiclass
       clus
vv      HVCN1 MUTATED HVCN1 WILD-TYPE
  T1+T2             1               5
  T3+T4             3              63
D227V5, binary
                 cls
clus               0  1
  HVCN1 MUTATED    3  1
  HVCN1 WILD-TYPE 14 53
[1] "tbl2"
                 cls
clus              [,1] [,2]
  HVCN1 MUTATED      3    1
  HVCN1 WILD-TYPE   14   53
   clus
vv  HVCN1 MUTATED HVCN1 WILD-TYPE
  0             3              14
  1             1              53
                 vv
clus              M0 M1 MX
  HVCN1 MUTATED    2  0  2
  HVCN1 WILD-TYPE 37  3 28
D227V6, multiclass
    clus
vv   HVCN1 MUTATED HVCN1 WILD-TYPE
  M0             2              37
  M1             0               3
  MX             2              28
D227V7, binary
                 cls
clus               0  1
  HVCN1 MUTATED    1  3
  HVCN1 WILD-TYPE 35 33
[1] "tbl2"
                 cls
clus              [,1] [,2]
  HVCN1 MUTATED      1    3
  HVCN1 WILD-TYPE   35   33
        clus
vv       HVCN1 MUTATED HVCN1 WILD-TYPE
  FEMALE             1              35
  MALE               3              33
                 vv
clus              PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  HVCN1 MUTATED                                     4
  HVCN1 WILD-TYPE                                  61
                 vv
clus              PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  HVCN1 MUTATED                                       0
  HVCN1 WILD-TYPE                                     4
                 vv
clus              PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  HVCN1 MUTATED                                                  0
  HVCN1 WILD-TYPE                                                2
D227V8, multiclass
                                                  clus
vv                                                 HVCN1 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                          4
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                        0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA             0
                                                  clus
vv                                                 HVCN1 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                           61
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                          4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA               2
D227V9, continuous
D227V10, continuous
                 vv
clus              R0 R1 RX
  HVCN1 MUTATED    4  0  0
  HVCN1 WILD-TYPE 38 24  2
D227V11, multiclass
    clus
vv   HVCN1 MUTATED HVCN1 WILD-TYPE
  R0             4              38
  R1             0              24
  RX             0               2
D227V12, continuous

Clustering(228) Variable = OTX1 MUTATION ANALYSIS
D228V1, survival
                sevent
clus2             0  1
  OTX1 MUTATED    3  4
  OTX1 WILD-TYPE 37 25
  OTX1 MUTATED OTX1 WILD-TYPE 
             7             62 
  OTX1 MUTATED OTX1 WILD-TYPE 
             4             25 
$`OTX1 MUTATED`
TCGA-F2-7276 TCGA-FB-A78T TCGA-HZ-8638 TCGA-IB-7651 TCGA-IB-7889 TCGA-LB-A7SX 
        7.10         0.03         2.99        19.82        15.81         4.18 
TCGA-US-A77E 
       14.14 

$`OTX1 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-A44G TCGA-F2-A44H TCGA-FB-A4P5 
       10.98         9.70        11.84         5.03        19.27         0.13 
TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A7DR TCGA-FZ-5920 TCGA-FZ-5922 
       11.93        12.66         2.47         5.46         2.01        36.20 
TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7289 TCGA-HZ-7918 
       20.81        12.89         7.66        13.02         7.89         0.92 
TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 
        0.66         0.13         0.26        12.13        11.87         0.26 
TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 
        0.62         0.79         0.69         3.95         0.92         0.53 
TCGA-HZ-8636 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 
        0.16         0.76         0.95         6.38         1.51        11.41 
TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7652 TCGA-IB-7885 
       49.38         4.77        21.90        15.35        15.65        27.98 
TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-7893 
        4.04         3.62        43.79        19.66        16.04         3.85 
TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ 
       15.98         0.56        17.16        10.82         9.86         7.20 
TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-OE-A75W TCGA-PZ-A5RE TCGA-Q3-A5QY 
       15.12         0.26         1.35         3.62         8.12        13.68 
TCGA-US-A779 TCGA-US-A77J 
       16.80        18.67 

  OTX1 MUTATED OTX1 WILD-TYPE 
          0.03           0.13 
  OTX1 MUTATED OTX1 WILD-TYPE 
         19.82          49.38 
  OTX1 MUTATED OTX1 WILD-TYPE 
         7.100          7.775 
[1] "0.0 - 19.8 (7.1)" "0.1 - 49.4 (7.8)"
    TCGA-F2-6879     TCGA-F2-6880     TCGA-F2-7273     TCGA-F2-7276 
"OTX1 WILD-TYPE" "OTX1 WILD-TYPE" "OTX1 WILD-TYPE"   "OTX1 MUTATED" 
    TCGA-F2-A44G     TCGA-F2-A44H     TCGA-FB-A4P5     TCGA-FB-A4P6 
"OTX1 WILD-TYPE" "OTX1 WILD-TYPE" "OTX1 WILD-TYPE" "OTX1 WILD-TYPE" 
    TCGA-FB-A545     TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-FB-A7DR 
"OTX1 WILD-TYPE" "OTX1 WILD-TYPE"   "OTX1 MUTATED" "OTX1 WILD-TYPE" 
    TCGA-FZ-5920     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-H6-8124 
"OTX1 WILD-TYPE" "OTX1 WILD-TYPE" "OTX1 WILD-TYPE" "OTX1 WILD-TYPE" 
    TCGA-H6-A45N     TCGA-H8-A6C1     TCGA-HZ-7289     TCGA-HZ-7918 
"OTX1 WILD-TYPE" "OTX1 WILD-TYPE" "OTX1 WILD-TYPE" "OTX1 WILD-TYPE" 
    TCGA-HZ-7919     TCGA-HZ-7922     TCGA-HZ-7923     TCGA-HZ-7924 
"OTX1 WILD-TYPE" "OTX1 WILD-TYPE" "OTX1 WILD-TYPE" "OTX1 WILD-TYPE" 
    TCGA-HZ-7925     TCGA-HZ-7926     TCGA-HZ-8001     TCGA-HZ-8002 
"OTX1 WILD-TYPE" "OTX1 WILD-TYPE" "OTX1 WILD-TYPE" "OTX1 WILD-TYPE" 
    TCGA-HZ-8003     TCGA-HZ-8005     TCGA-HZ-8315     TCGA-HZ-8317 
"OTX1 WILD-TYPE" "OTX1 WILD-TYPE" "OTX1 WILD-TYPE" "OTX1 WILD-TYPE" 
    TCGA-HZ-8636     TCGA-HZ-8638     TCGA-HZ-A49G     TCGA-HZ-A49H 
"OTX1 WILD-TYPE"   "OTX1 MUTATED" "OTX1 WILD-TYPE" "OTX1 WILD-TYPE" 
    TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-IB-7644     TCGA-IB-7645 
"OTX1 WILD-TYPE" "OTX1 WILD-TYPE" "OTX1 WILD-TYPE" "OTX1 WILD-TYPE" 
    TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7651 
"OTX1 WILD-TYPE" "OTX1 WILD-TYPE" "OTX1 WILD-TYPE"   "OTX1 MUTATED" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887 
"OTX1 WILD-TYPE" "OTX1 WILD-TYPE" "OTX1 WILD-TYPE" "OTX1 WILD-TYPE" 
    TCGA-IB-7888     TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891 
"OTX1 WILD-TYPE"   "OTX1 MUTATED" "OTX1 WILD-TYPE" "OTX1 WILD-TYPE" 
    TCGA-IB-7893     TCGA-IB-7897     TCGA-IB-8126     TCGA-IB-8127 
"OTX1 WILD-TYPE" "OTX1 WILD-TYPE" "OTX1 WILD-TYPE" "OTX1 WILD-TYPE" 
    TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS 
"OTX1 WILD-TYPE" "OTX1 WILD-TYPE" "OTX1 WILD-TYPE" "OTX1 WILD-TYPE" 
    TCGA-IB-A5ST     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
"OTX1 WILD-TYPE" "OTX1 WILD-TYPE"   "OTX1 MUTATED" "OTX1 WILD-TYPE" 
    TCGA-PZ-A5RE     TCGA-Q3-A5QY     TCGA-US-A779     TCGA-US-A77E 
"OTX1 WILD-TYPE" "OTX1 WILD-TYPE" "OTX1 WILD-TYPE"   "OTX1 MUTATED" 
    TCGA-US-A77J 
"OTX1 WILD-TYPE" 
    TCGA-F2-6879     TCGA-F2-6880     TCGA-F2-7273     TCGA-F2-7276 
"OTX1 WILD-TYPE" "OTX1 WILD-TYPE" "OTX1 WILD-TYPE"   "OTX1 MUTATED" 
    TCGA-F2-A44G     TCGA-F2-A44H     TCGA-FB-A4P5     TCGA-FB-A4P6 
"OTX1 WILD-TYPE" "OTX1 WILD-TYPE" "OTX1 WILD-TYPE" "OTX1 WILD-TYPE" 
    TCGA-FB-A545     TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-FB-A7DR 
"OTX1 WILD-TYPE" "OTX1 WILD-TYPE"   "OTX1 MUTATED" "OTX1 WILD-TYPE" 
    TCGA-FZ-5920     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-H6-8124 
"OTX1 WILD-TYPE" "OTX1 WILD-TYPE" "OTX1 WILD-TYPE" "OTX1 WILD-TYPE" 
    TCGA-H6-A45N     TCGA-H8-A6C1     TCGA-HZ-7289     TCGA-HZ-7918 
"OTX1 WILD-TYPE" "OTX1 WILD-TYPE" "OTX1 WILD-TYPE" "OTX1 WILD-TYPE" 
    TCGA-HZ-7919     TCGA-HZ-7922     TCGA-HZ-7923     TCGA-HZ-7924 
"OTX1 WILD-TYPE" "OTX1 WILD-TYPE" "OTX1 WILD-TYPE" "OTX1 WILD-TYPE" 
    TCGA-HZ-7925     TCGA-HZ-7926     TCGA-HZ-8001     TCGA-HZ-8002 
"OTX1 WILD-TYPE" "OTX1 WILD-TYPE" "OTX1 WILD-TYPE" "OTX1 WILD-TYPE" 
    TCGA-HZ-8003     TCGA-HZ-8005     TCGA-HZ-8315     TCGA-HZ-8317 
"OTX1 WILD-TYPE" "OTX1 WILD-TYPE" "OTX1 WILD-TYPE" "OTX1 WILD-TYPE" 
    TCGA-HZ-8636     TCGA-HZ-8638     TCGA-HZ-A49G     TCGA-HZ-A49H 
"OTX1 WILD-TYPE"   "OTX1 MUTATED" "OTX1 WILD-TYPE" "OTX1 WILD-TYPE" 
    TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-IB-7644     TCGA-IB-7645 
"OTX1 WILD-TYPE" "OTX1 WILD-TYPE" "OTX1 WILD-TYPE" "OTX1 WILD-TYPE" 
    TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7651 
"OTX1 WILD-TYPE" "OTX1 WILD-TYPE" "OTX1 WILD-TYPE"   "OTX1 MUTATED" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887 
"OTX1 WILD-TYPE" "OTX1 WILD-TYPE" "OTX1 WILD-TYPE" "OTX1 WILD-TYPE" 
    TCGA-IB-7888     TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891 
"OTX1 WILD-TYPE"   "OTX1 MUTATED" "OTX1 WILD-TYPE" "OTX1 WILD-TYPE" 
    TCGA-IB-7893     TCGA-IB-7897     TCGA-IB-8126     TCGA-IB-8127 
"OTX1 WILD-TYPE" "OTX1 WILD-TYPE" "OTX1 WILD-TYPE" "OTX1 WILD-TYPE" 
    TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS 
"OTX1 WILD-TYPE" "OTX1 WILD-TYPE" "OTX1 WILD-TYPE" "OTX1 WILD-TYPE" 
    TCGA-IB-A5ST     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
"OTX1 WILD-TYPE" "OTX1 WILD-TYPE"   "OTX1 MUTATED" "OTX1 WILD-TYPE" 
    TCGA-PZ-A5RE     TCGA-Q3-A5QY     TCGA-US-A779     TCGA-US-A77E 
"OTX1 WILD-TYPE" "OTX1 WILD-TYPE" "OTX1 WILD-TYPE"   "OTX1 MUTATED" 
    TCGA-US-A77J 
"OTX1 WILD-TYPE" 
    TCGA-F2-6879     TCGA-F2-6880     TCGA-F2-7273     TCGA-F2-7276 
"OTX1 WILD-TYPE" "OTX1 WILD-TYPE" "OTX1 WILD-TYPE"   "OTX1 MUTATED" 
    TCGA-F2-A44G     TCGA-F2-A44H     TCGA-FB-A4P5     TCGA-FB-A4P6 
"OTX1 WILD-TYPE" "OTX1 WILD-TYPE" "OTX1 WILD-TYPE" "OTX1 WILD-TYPE" 
    TCGA-FB-A545     TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-FB-A7DR 
"OTX1 WILD-TYPE" "OTX1 WILD-TYPE"   "OTX1 MUTATED" "OTX1 WILD-TYPE" 
    TCGA-FZ-5920     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-H6-8124 
"OTX1 WILD-TYPE" "OTX1 WILD-TYPE" "OTX1 WILD-TYPE" "OTX1 WILD-TYPE" 
    TCGA-H6-A45N     TCGA-H8-A6C1     TCGA-HZ-7289     TCGA-HZ-7918 
"OTX1 WILD-TYPE" "OTX1 WILD-TYPE" "OTX1 WILD-TYPE" "OTX1 WILD-TYPE" 
    TCGA-HZ-7919     TCGA-HZ-7922     TCGA-HZ-7923     TCGA-HZ-7924 
"OTX1 WILD-TYPE" "OTX1 WILD-TYPE" "OTX1 WILD-TYPE" "OTX1 WILD-TYPE" 
    TCGA-HZ-7925     TCGA-HZ-7926     TCGA-HZ-8001     TCGA-HZ-8002 
"OTX1 WILD-TYPE" "OTX1 WILD-TYPE" "OTX1 WILD-TYPE" "OTX1 WILD-TYPE" 
    TCGA-HZ-8003     TCGA-HZ-8005     TCGA-HZ-8315     TCGA-HZ-8317 
"OTX1 WILD-TYPE" "OTX1 WILD-TYPE" "OTX1 WILD-TYPE" "OTX1 WILD-TYPE" 
    TCGA-HZ-8636     TCGA-HZ-8638     TCGA-HZ-A49G     TCGA-HZ-A49H 
"OTX1 WILD-TYPE"   "OTX1 MUTATED" "OTX1 WILD-TYPE" "OTX1 WILD-TYPE" 
    TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-IB-7644     TCGA-IB-7645 
"OTX1 WILD-TYPE" "OTX1 WILD-TYPE" "OTX1 WILD-TYPE" "OTX1 WILD-TYPE" 
    TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7651 
"OTX1 WILD-TYPE" "OTX1 WILD-TYPE" "OTX1 WILD-TYPE"   "OTX1 MUTATED" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887 
"OTX1 WILD-TYPE" "OTX1 WILD-TYPE" "OTX1 WILD-TYPE" "OTX1 WILD-TYPE" 
    TCGA-IB-7888     TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891 
"OTX1 WILD-TYPE"   "OTX1 MUTATED" "OTX1 WILD-TYPE" "OTX1 WILD-TYPE" 
    TCGA-IB-7893     TCGA-IB-7897     TCGA-IB-8126     TCGA-IB-8127 
"OTX1 WILD-TYPE" "OTX1 WILD-TYPE" "OTX1 WILD-TYPE" "OTX1 WILD-TYPE" 
    TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS 
"OTX1 WILD-TYPE" "OTX1 WILD-TYPE" "OTX1 WILD-TYPE" "OTX1 WILD-TYPE" 
    TCGA-IB-A5ST     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
"OTX1 WILD-TYPE" "OTX1 WILD-TYPE"   "OTX1 MUTATED" "OTX1 WILD-TYPE" 
    TCGA-PZ-A5RE     TCGA-Q3-A5QY     TCGA-US-A779     TCGA-US-A77E 
"OTX1 WILD-TYPE" "OTX1 WILD-TYPE" "OTX1 WILD-TYPE"   "OTX1 MUTATED" 
    TCGA-US-A77J 
"OTX1 WILD-TYPE" 
[1] "hr=" "1.6"
D228V2, continuous
                vv
clus             STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  OTX1 MUTATED          1        0         0         6         0        0
  OTX1 WILD-TYPE        0        4        11        45         2        3
D228V3, multiclass
                vv
clus             T1+T2 T3+T4
  OTX1 MUTATED       1     6
  OTX1 WILD-TYPE     5    60
D228V4, multiclass
       clus
vv      OTX1 MUTATED OTX1 WILD-TYPE
  T1+T2            1              5
  T3+T4            6             60
D228V5, binary
                cls
clus              0  1
  OTX1 MUTATED    1  6
  OTX1 WILD-TYPE 16 48
[1] "tbl2"
                cls
clus             [,1] [,2]
  OTX1 MUTATED      1    6
  OTX1 WILD-TYPE   16   48
   clus
vv  OTX1 MUTATED OTX1 WILD-TYPE
  0            1             16
  1            6             48
                vv
clus             M0 M1 MX
  OTX1 MUTATED    4  0  3
  OTX1 WILD-TYPE 35  3 27
D228V6, multiclass
    clus
vv   OTX1 MUTATED OTX1 WILD-TYPE
  M0            4             35
  M1            0              3
  MX            3             27
D228V7, binary
                cls
clus              0  1
  OTX1 MUTATED    5  2
  OTX1 WILD-TYPE 31 34
[1] "tbl2"
                cls
clus             [,1] [,2]
  OTX1 MUTATED      5    2
  OTX1 WILD-TYPE   31   34
        clus
vv       OTX1 MUTATED OTX1 WILD-TYPE
  FEMALE            5             31
  MALE              2             34
                vv
clus             PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  OTX1 MUTATED                                     6
  OTX1 WILD-TYPE                                  59
                vv
clus             PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  OTX1 MUTATED                                       0
  OTX1 WILD-TYPE                                     4
                vv
clus             PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  OTX1 MUTATED                                                  1
  OTX1 WILD-TYPE                                                1
D228V8, multiclass
                                                  clus
vv                                                 OTX1 MUTATED OTX1 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                         6             59
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                       0              4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA            1              1
D228V9, continuous
D228V10, continuous
                vv
clus             R0 R1 RX
  OTX1 MUTATED    5  2  0
  OTX1 WILD-TYPE 37 22  2
D228V11, multiclass
    clus
vv   OTX1 MUTATED OTX1 WILD-TYPE
  R0            5             37
  R1            2             22
  RX            0              2
D228V12, continuous

Clustering(229) Variable = PRKCH MUTATION ANALYSIS
D229V1, survival
                 sevent
clus2              0  1
  PRKCH MUTATED    3  2
  PRKCH WILD-TYPE 37 27
  PRKCH MUTATED PRKCH WILD-TYPE 
              5              64 
  PRKCH MUTATED PRKCH WILD-TYPE 
              2              27 
$`PRKCH MUTATED`
TCGA-F2-A44H TCGA-HZ-7923 TCGA-HZ-8001 TCGA-IB-7651 TCGA-IB-A6UG 
       19.27         0.26         0.62        19.82         1.35 

$`PRKCH WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-FB-A4P5 
       10.98         9.70        11.84         7.10         5.03         0.13 
TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR TCGA-FZ-5920 
       11.93        12.66         2.47         0.03         5.46         2.01 
TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7289 
       36.20        20.81        12.89         7.66        13.02         7.89 
TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 
        0.92         0.66         0.13        12.13        11.87         0.26 
TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8636 
        0.79         0.69         3.95         0.92         0.53         0.16 
TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 
        2.99         0.76         0.95         6.38         1.51        11.41 
TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7652 TCGA-IB-7885 
       49.38         4.77        21.90        15.35        15.65        27.98 
TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 
        4.04         3.62        43.79        15.81        19.66        16.04 
TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP 
        3.85        15.98         0.56        17.16        10.82         9.86 
TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST TCGA-LB-A7SX TCGA-OE-A75W TCGA-PZ-A5RE 
        7.20        15.12         0.26         4.18         3.62         8.12 
TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
       13.68        16.80        14.14        18.67 

  PRKCH MUTATED PRKCH WILD-TYPE 
           0.26            0.03 
  PRKCH MUTATED PRKCH WILD-TYPE 
          19.82           49.38 
  PRKCH MUTATED PRKCH WILD-TYPE 
          1.350           7.775 
[1] "0.3 - 19.8 (1.4)" "0.0 - 49.4 (7.8)"
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"PRKCH WILD-TYPE" "PRKCH WILD-TYPE" "PRKCH WILD-TYPE" "PRKCH WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"PRKCH WILD-TYPE"   "PRKCH MUTATED" "PRKCH WILD-TYPE" "PRKCH WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"PRKCH WILD-TYPE" "PRKCH WILD-TYPE" "PRKCH WILD-TYPE" "PRKCH WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"PRKCH WILD-TYPE" "PRKCH WILD-TYPE" "PRKCH WILD-TYPE" "PRKCH WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"PRKCH WILD-TYPE" "PRKCH WILD-TYPE" "PRKCH WILD-TYPE" "PRKCH WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"PRKCH WILD-TYPE" "PRKCH WILD-TYPE"   "PRKCH MUTATED" "PRKCH WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"PRKCH WILD-TYPE" "PRKCH WILD-TYPE"   "PRKCH MUTATED" "PRKCH WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"PRKCH WILD-TYPE" "PRKCH WILD-TYPE" "PRKCH WILD-TYPE" "PRKCH WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"PRKCH WILD-TYPE" "PRKCH WILD-TYPE" "PRKCH WILD-TYPE" "PRKCH WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"PRKCH WILD-TYPE" "PRKCH WILD-TYPE" "PRKCH WILD-TYPE" "PRKCH WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"PRKCH WILD-TYPE" "PRKCH WILD-TYPE" "PRKCH WILD-TYPE"   "PRKCH MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"PRKCH WILD-TYPE" "PRKCH WILD-TYPE" "PRKCH WILD-TYPE" "PRKCH WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"PRKCH WILD-TYPE" "PRKCH WILD-TYPE" "PRKCH WILD-TYPE" "PRKCH WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"PRKCH WILD-TYPE" "PRKCH WILD-TYPE" "PRKCH WILD-TYPE" "PRKCH WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"PRKCH WILD-TYPE" "PRKCH WILD-TYPE" "PRKCH WILD-TYPE" "PRKCH WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"PRKCH WILD-TYPE"   "PRKCH MUTATED" "PRKCH WILD-TYPE" "PRKCH WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"PRKCH WILD-TYPE" "PRKCH WILD-TYPE" "PRKCH WILD-TYPE" "PRKCH WILD-TYPE" 
     TCGA-US-A77J 
"PRKCH WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"PRKCH WILD-TYPE" "PRKCH WILD-TYPE" "PRKCH WILD-TYPE" "PRKCH WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"PRKCH WILD-TYPE"   "PRKCH MUTATED" "PRKCH WILD-TYPE" "PRKCH WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"PRKCH WILD-TYPE" "PRKCH WILD-TYPE" "PRKCH WILD-TYPE" "PRKCH WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"PRKCH WILD-TYPE" "PRKCH WILD-TYPE" "PRKCH WILD-TYPE" "PRKCH WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"PRKCH WILD-TYPE" "PRKCH WILD-TYPE" "PRKCH WILD-TYPE" "PRKCH WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"PRKCH WILD-TYPE" "PRKCH WILD-TYPE"   "PRKCH MUTATED" "PRKCH WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"PRKCH WILD-TYPE" "PRKCH WILD-TYPE"   "PRKCH MUTATED" "PRKCH WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"PRKCH WILD-TYPE" "PRKCH WILD-TYPE" "PRKCH WILD-TYPE" "PRKCH WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"PRKCH WILD-TYPE" "PRKCH WILD-TYPE" "PRKCH WILD-TYPE" "PRKCH WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"PRKCH WILD-TYPE" "PRKCH WILD-TYPE" "PRKCH WILD-TYPE" "PRKCH WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"PRKCH WILD-TYPE" "PRKCH WILD-TYPE" "PRKCH WILD-TYPE"   "PRKCH MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"PRKCH WILD-TYPE" "PRKCH WILD-TYPE" "PRKCH WILD-TYPE" "PRKCH WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"PRKCH WILD-TYPE" "PRKCH WILD-TYPE" "PRKCH WILD-TYPE" "PRKCH WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"PRKCH WILD-TYPE" "PRKCH WILD-TYPE" "PRKCH WILD-TYPE" "PRKCH WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"PRKCH WILD-TYPE" "PRKCH WILD-TYPE" "PRKCH WILD-TYPE" "PRKCH WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"PRKCH WILD-TYPE"   "PRKCH MUTATED" "PRKCH WILD-TYPE" "PRKCH WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"PRKCH WILD-TYPE" "PRKCH WILD-TYPE" "PRKCH WILD-TYPE" "PRKCH WILD-TYPE" 
     TCGA-US-A77J 
"PRKCH WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"PRKCH WILD-TYPE" "PRKCH WILD-TYPE" "PRKCH WILD-TYPE" "PRKCH WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"PRKCH WILD-TYPE"   "PRKCH MUTATED" "PRKCH WILD-TYPE" "PRKCH WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"PRKCH WILD-TYPE" "PRKCH WILD-TYPE" "PRKCH WILD-TYPE" "PRKCH WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"PRKCH WILD-TYPE" "PRKCH WILD-TYPE" "PRKCH WILD-TYPE" "PRKCH WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"PRKCH WILD-TYPE" "PRKCH WILD-TYPE" "PRKCH WILD-TYPE" "PRKCH WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"PRKCH WILD-TYPE" "PRKCH WILD-TYPE"   "PRKCH MUTATED" "PRKCH WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"PRKCH WILD-TYPE" "PRKCH WILD-TYPE"   "PRKCH MUTATED" "PRKCH WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"PRKCH WILD-TYPE" "PRKCH WILD-TYPE" "PRKCH WILD-TYPE" "PRKCH WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"PRKCH WILD-TYPE" "PRKCH WILD-TYPE" "PRKCH WILD-TYPE" "PRKCH WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"PRKCH WILD-TYPE" "PRKCH WILD-TYPE" "PRKCH WILD-TYPE" "PRKCH WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"PRKCH WILD-TYPE" "PRKCH WILD-TYPE" "PRKCH WILD-TYPE"   "PRKCH MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"PRKCH WILD-TYPE" "PRKCH WILD-TYPE" "PRKCH WILD-TYPE" "PRKCH WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"PRKCH WILD-TYPE" "PRKCH WILD-TYPE" "PRKCH WILD-TYPE" "PRKCH WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"PRKCH WILD-TYPE" "PRKCH WILD-TYPE" "PRKCH WILD-TYPE" "PRKCH WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"PRKCH WILD-TYPE" "PRKCH WILD-TYPE" "PRKCH WILD-TYPE" "PRKCH WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"PRKCH WILD-TYPE"   "PRKCH MUTATED" "PRKCH WILD-TYPE" "PRKCH WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"PRKCH WILD-TYPE" "PRKCH WILD-TYPE" "PRKCH WILD-TYPE" "PRKCH WILD-TYPE" 
     TCGA-US-A77J 
"PRKCH WILD-TYPE" 
[1] "hr=" "1"  
D229V2, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  PRKCH MUTATED          0        0         2         2         1        0
  PRKCH WILD-TYPE        1        4         9        49         1        3
D229V3, multiclass
                 vv
clus              T1+T2 T3+T4
  PRKCH MUTATED       0     5
  PRKCH WILD-TYPE     6    61
D229V4, multiclass
       clus
vv      PRKCH MUTATED PRKCH WILD-TYPE
  T1+T2             0               6
  T3+T4             5              61
D229V5, binary
                 cls
clus               0  1
  PRKCH MUTATED    3  2
  PRKCH WILD-TYPE 14 52
[1] "tbl2"
                 cls
clus              [,1] [,2]
  PRKCH MUTATED      3    2
  PRKCH WILD-TYPE   14   52
   clus
vv  PRKCH MUTATED PRKCH WILD-TYPE
  0             3              14
  1             2              52
                 vv
clus              M0 M1 MX
  PRKCH MUTATED    3  0  2
  PRKCH WILD-TYPE 36  3 28
D229V6, multiclass
    clus
vv   PRKCH MUTATED PRKCH WILD-TYPE
  M0             3              36
  M1             0               3
  MX             2              28
D229V7, binary
                 cls
clus               0  1
  PRKCH MUTATED    1  4
  PRKCH WILD-TYPE 35 32
[1] "tbl2"
                 cls
clus              [,1] [,2]
  PRKCH MUTATED      1    4
  PRKCH WILD-TYPE   35   32
        clus
vv       PRKCH MUTATED PRKCH WILD-TYPE
  FEMALE             1              35
  MALE               4              32
                 vv
clus              PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  PRKCH MUTATED                                     5
  PRKCH WILD-TYPE                                  60
                 vv
clus              PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  PRKCH MUTATED                                       0
  PRKCH WILD-TYPE                                     4
                 vv
clus              PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  PRKCH MUTATED                                                  0
  PRKCH WILD-TYPE                                                2
D229V8, multiclass
                                                  clus
vv                                                 PRKCH MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                          5
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                        0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA             0
                                                  clus
vv                                                 PRKCH WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                           60
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                          4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA               2
D229V9, continuous
[1] "Remove cluster labels:" "PRKCH MUTATED"         
clus
  PRKCH MUTATED PRKCH WILD-TYPE 
              2              20 
     TCGA-F2-6880      TCGA-FB-A4P5      TCGA-FB-A4P6      TCGA-FB-A5VM 
"PRKCH WILD-TYPE" "PRKCH WILD-TYPE" "PRKCH WILD-TYPE" "PRKCH WILD-TYPE" 
     TCGA-FB-A78T      TCGA-FB-A7DR      TCGA-H6-8124      TCGA-H6-A45N 
"PRKCH WILD-TYPE" "PRKCH WILD-TYPE" "PRKCH WILD-TYPE" "PRKCH WILD-TYPE" 
     TCGA-H8-A6C1      TCGA-IB-7644      TCGA-IB-7649      TCGA-IB-7885 
"PRKCH WILD-TYPE" "PRKCH WILD-TYPE" "PRKCH WILD-TYPE" "PRKCH WILD-TYPE" 
     TCGA-IB-7886      TCGA-IB-7887      TCGA-IB-7891      TCGA-IB-8126 
"PRKCH WILD-TYPE" "PRKCH WILD-TYPE" "PRKCH WILD-TYPE" "PRKCH WILD-TYPE" 
     TCGA-IB-8127      TCGA-IB-A5SS      TCGA-LB-A7SX      TCGA-OE-A75W 
"PRKCH WILD-TYPE" "PRKCH WILD-TYPE" "PRKCH WILD-TYPE" "PRKCH WILD-TYPE" 
D229V10, continuous
[1] "Remove cluster labels:" "PRKCH MUTATED"         
clus
  PRKCH MUTATED PRKCH WILD-TYPE 
              2              17 
     TCGA-FB-A4P5      TCGA-FB-A4P6      TCGA-FB-A5VM      TCGA-FB-A78T 
"PRKCH WILD-TYPE" "PRKCH WILD-TYPE" "PRKCH WILD-TYPE" "PRKCH WILD-TYPE" 
     TCGA-FB-A7DR      TCGA-H6-8124      TCGA-H8-A6C1      TCGA-IB-7644 
"PRKCH WILD-TYPE" "PRKCH WILD-TYPE" "PRKCH WILD-TYPE" "PRKCH WILD-TYPE" 
     TCGA-IB-7649      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7891 
"PRKCH WILD-TYPE" "PRKCH WILD-TYPE" "PRKCH WILD-TYPE" "PRKCH WILD-TYPE" 
     TCGA-IB-8126      TCGA-IB-8127      TCGA-IB-A5SS      TCGA-LB-A7SX 
"PRKCH WILD-TYPE" "PRKCH WILD-TYPE" "PRKCH WILD-TYPE" "PRKCH WILD-TYPE" 
     TCGA-OE-A75W 
"PRKCH WILD-TYPE" 
                 vv
clus              R0 R1 RX
  PRKCH MUTATED    4  1  0
  PRKCH WILD-TYPE 38 23  2
D229V11, multiclass
    clus
vv   PRKCH MUTATED PRKCH WILD-TYPE
  R0             4              38
  R1             1              23
  RX             0               2
D229V12, continuous

Clustering(230) Variable = LIMD1 MUTATION ANALYSIS
D230V1, survival
                 sevent
clus2              0  1
  LIMD1 MUTATED    3  4
  LIMD1 WILD-TYPE 37 25
  LIMD1 MUTATED LIMD1 WILD-TYPE 
              7              62 
  LIMD1 MUTATED LIMD1 WILD-TYPE 
              4              25 
$`LIMD1 MUTATED`
TCGA-FB-A545 TCGA-H6-A45N TCGA-HZ-8001 TCGA-HZ-8005 TCGA-HZ-8317 TCGA-IB-7651 
       12.66         7.66         0.62         3.95         0.53        19.82 
TCGA-IB-7888 
       43.79 

$`LIMD1 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P5 TCGA-FB-A4P6 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR TCGA-FZ-5920 
        0.13        11.93         2.47         0.03         5.46         2.01 
TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 TCGA-H8-A6C1 TCGA-HZ-7289 TCGA-HZ-7918 
       36.20        20.81        12.89        13.02         7.89         0.92 
TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 
        0.66         0.13         0.26        12.13        11.87         0.26 
TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8315 TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G 
        0.79         0.69         0.92         0.16         2.99         0.76 
TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7646 
        0.95         6.38         1.51        11.41        49.38         4.77 
TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 
       21.90        15.35        15.65        27.98         4.04         3.62 
TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-8126 
       15.81        19.66        16.04         3.85        15.98         0.56 
TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST 
       17.16        10.82         9.86         7.20        15.12         0.26 
TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 
        1.35         4.18         3.62         8.12        13.68        16.80 
TCGA-US-A77E TCGA-US-A77J 
       14.14        18.67 

  LIMD1 MUTATED LIMD1 WILD-TYPE 
           0.53            0.03 
  LIMD1 MUTATED LIMD1 WILD-TYPE 
          43.79           49.38 
  LIMD1 MUTATED LIMD1 WILD-TYPE 
          7.660           7.545 
[1] "0.5 - 43.8 (7.7)" "0.0 - 49.4 (7.5)"
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"LIMD1 WILD-TYPE" "LIMD1 WILD-TYPE" "LIMD1 WILD-TYPE" "LIMD1 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"LIMD1 WILD-TYPE" "LIMD1 WILD-TYPE" "LIMD1 WILD-TYPE" "LIMD1 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
  "LIMD1 MUTATED" "LIMD1 WILD-TYPE" "LIMD1 WILD-TYPE" "LIMD1 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"LIMD1 WILD-TYPE" "LIMD1 WILD-TYPE" "LIMD1 WILD-TYPE" "LIMD1 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
  "LIMD1 MUTATED" "LIMD1 WILD-TYPE" "LIMD1 WILD-TYPE" "LIMD1 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"LIMD1 WILD-TYPE" "LIMD1 WILD-TYPE" "LIMD1 WILD-TYPE" "LIMD1 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"LIMD1 WILD-TYPE" "LIMD1 WILD-TYPE"   "LIMD1 MUTATED" "LIMD1 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"LIMD1 WILD-TYPE"   "LIMD1 MUTATED" "LIMD1 WILD-TYPE"   "LIMD1 MUTATED" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"LIMD1 WILD-TYPE" "LIMD1 WILD-TYPE" "LIMD1 WILD-TYPE" "LIMD1 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"LIMD1 WILD-TYPE" "LIMD1 WILD-TYPE" "LIMD1 WILD-TYPE" "LIMD1 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"LIMD1 WILD-TYPE" "LIMD1 WILD-TYPE" "LIMD1 WILD-TYPE"   "LIMD1 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"LIMD1 WILD-TYPE" "LIMD1 WILD-TYPE" "LIMD1 WILD-TYPE" "LIMD1 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
  "LIMD1 MUTATED" "LIMD1 WILD-TYPE" "LIMD1 WILD-TYPE" "LIMD1 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"LIMD1 WILD-TYPE" "LIMD1 WILD-TYPE" "LIMD1 WILD-TYPE" "LIMD1 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"LIMD1 WILD-TYPE" "LIMD1 WILD-TYPE" "LIMD1 WILD-TYPE" "LIMD1 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"LIMD1 WILD-TYPE" "LIMD1 WILD-TYPE" "LIMD1 WILD-TYPE" "LIMD1 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"LIMD1 WILD-TYPE" "LIMD1 WILD-TYPE" "LIMD1 WILD-TYPE" "LIMD1 WILD-TYPE" 
     TCGA-US-A77J 
"LIMD1 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"LIMD1 WILD-TYPE" "LIMD1 WILD-TYPE" "LIMD1 WILD-TYPE" "LIMD1 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"LIMD1 WILD-TYPE" "LIMD1 WILD-TYPE" "LIMD1 WILD-TYPE" "LIMD1 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
  "LIMD1 MUTATED" "LIMD1 WILD-TYPE" "LIMD1 WILD-TYPE" "LIMD1 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"LIMD1 WILD-TYPE" "LIMD1 WILD-TYPE" "LIMD1 WILD-TYPE" "LIMD1 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
  "LIMD1 MUTATED" "LIMD1 WILD-TYPE" "LIMD1 WILD-TYPE" "LIMD1 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"LIMD1 WILD-TYPE" "LIMD1 WILD-TYPE" "LIMD1 WILD-TYPE" "LIMD1 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"LIMD1 WILD-TYPE" "LIMD1 WILD-TYPE"   "LIMD1 MUTATED" "LIMD1 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"LIMD1 WILD-TYPE"   "LIMD1 MUTATED" "LIMD1 WILD-TYPE"   "LIMD1 MUTATED" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"LIMD1 WILD-TYPE" "LIMD1 WILD-TYPE" "LIMD1 WILD-TYPE" "LIMD1 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"LIMD1 WILD-TYPE" "LIMD1 WILD-TYPE" "LIMD1 WILD-TYPE" "LIMD1 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"LIMD1 WILD-TYPE" "LIMD1 WILD-TYPE" "LIMD1 WILD-TYPE"   "LIMD1 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"LIMD1 WILD-TYPE" "LIMD1 WILD-TYPE" "LIMD1 WILD-TYPE" "LIMD1 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
  "LIMD1 MUTATED" "LIMD1 WILD-TYPE" "LIMD1 WILD-TYPE" "LIMD1 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"LIMD1 WILD-TYPE" "LIMD1 WILD-TYPE" "LIMD1 WILD-TYPE" "LIMD1 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"LIMD1 WILD-TYPE" "LIMD1 WILD-TYPE" "LIMD1 WILD-TYPE" "LIMD1 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"LIMD1 WILD-TYPE" "LIMD1 WILD-TYPE" "LIMD1 WILD-TYPE" "LIMD1 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"LIMD1 WILD-TYPE" "LIMD1 WILD-TYPE" "LIMD1 WILD-TYPE" "LIMD1 WILD-TYPE" 
     TCGA-US-A77J 
"LIMD1 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"LIMD1 WILD-TYPE" "LIMD1 WILD-TYPE" "LIMD1 WILD-TYPE" "LIMD1 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"LIMD1 WILD-TYPE" "LIMD1 WILD-TYPE" "LIMD1 WILD-TYPE" "LIMD1 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
  "LIMD1 MUTATED" "LIMD1 WILD-TYPE" "LIMD1 WILD-TYPE" "LIMD1 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"LIMD1 WILD-TYPE" "LIMD1 WILD-TYPE" "LIMD1 WILD-TYPE" "LIMD1 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
  "LIMD1 MUTATED" "LIMD1 WILD-TYPE" "LIMD1 WILD-TYPE" "LIMD1 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"LIMD1 WILD-TYPE" "LIMD1 WILD-TYPE" "LIMD1 WILD-TYPE" "LIMD1 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"LIMD1 WILD-TYPE" "LIMD1 WILD-TYPE"   "LIMD1 MUTATED" "LIMD1 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"LIMD1 WILD-TYPE"   "LIMD1 MUTATED" "LIMD1 WILD-TYPE"   "LIMD1 MUTATED" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"LIMD1 WILD-TYPE" "LIMD1 WILD-TYPE" "LIMD1 WILD-TYPE" "LIMD1 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"LIMD1 WILD-TYPE" "LIMD1 WILD-TYPE" "LIMD1 WILD-TYPE" "LIMD1 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"LIMD1 WILD-TYPE" "LIMD1 WILD-TYPE" "LIMD1 WILD-TYPE"   "LIMD1 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"LIMD1 WILD-TYPE" "LIMD1 WILD-TYPE" "LIMD1 WILD-TYPE" "LIMD1 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
  "LIMD1 MUTATED" "LIMD1 WILD-TYPE" "LIMD1 WILD-TYPE" "LIMD1 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"LIMD1 WILD-TYPE" "LIMD1 WILD-TYPE" "LIMD1 WILD-TYPE" "LIMD1 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"LIMD1 WILD-TYPE" "LIMD1 WILD-TYPE" "LIMD1 WILD-TYPE" "LIMD1 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"LIMD1 WILD-TYPE" "LIMD1 WILD-TYPE" "LIMD1 WILD-TYPE" "LIMD1 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"LIMD1 WILD-TYPE" "LIMD1 WILD-TYPE" "LIMD1 WILD-TYPE" "LIMD1 WILD-TYPE" 
     TCGA-US-A77J 
"LIMD1 WILD-TYPE" 
[1] "hr=" "1.1"
D230V2, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  LIMD1 MUTATED          0        0         1         5         1        0
  LIMD1 WILD-TYPE        1        4        10        46         1        3
D230V3, multiclass
                 vv
clus              T1+T2 T3+T4
  LIMD1 MUTATED       0     7
  LIMD1 WILD-TYPE     6    59
D230V4, multiclass
       clus
vv      LIMD1 MUTATED LIMD1 WILD-TYPE
  T1+T2             0               6
  T3+T4             7              59
D230V5, binary
                 cls
clus               0  1
  LIMD1 MUTATED    2  5
  LIMD1 WILD-TYPE 15 49
[1] "tbl2"
                 cls
clus              [,1] [,2]
  LIMD1 MUTATED      2    5
  LIMD1 WILD-TYPE   15   49
   clus
vv  LIMD1 MUTATED LIMD1 WILD-TYPE
  0             2              15
  1             5              49
                 vv
clus              M0 M1 MX
  LIMD1 MUTATED    3  0  4
  LIMD1 WILD-TYPE 36  3 26
D230V6, multiclass
    clus
vv   LIMD1 MUTATED LIMD1 WILD-TYPE
  M0             3              36
  M1             0               3
  MX             4              26
D230V7, binary
                 cls
clus               0  1
  LIMD1 MUTATED    5  2
  LIMD1 WILD-TYPE 31 34
[1] "tbl2"
                 cls
clus              [,1] [,2]
  LIMD1 MUTATED      5    2
  LIMD1 WILD-TYPE   31   34
        clus
vv       LIMD1 MUTATED LIMD1 WILD-TYPE
  FEMALE             5              31
  MALE               2              34
                 vv
clus              PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  LIMD1 MUTATED                                     6
  LIMD1 WILD-TYPE                                  59
                 vv
clus              PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  LIMD1 MUTATED                                       1
  LIMD1 WILD-TYPE                                     3
                 vv
clus              PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  LIMD1 MUTATED                                                  0
  LIMD1 WILD-TYPE                                                2
D230V8, multiclass
                                                  clus
vv                                                 LIMD1 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                          6
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                        1
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA             0
                                                  clus
vv                                                 LIMD1 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                           59
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                          3
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA               2
D230V9, continuous
[1] "Remove cluster labels:" "LIMD1 MUTATED"         
clus
  LIMD1 MUTATED LIMD1 WILD-TYPE 
              2              20 
     TCGA-F2-6880      TCGA-FB-A4P5      TCGA-FB-A4P6      TCGA-FB-A5VM 
"LIMD1 WILD-TYPE" "LIMD1 WILD-TYPE" "LIMD1 WILD-TYPE" "LIMD1 WILD-TYPE" 
     TCGA-FB-A78T      TCGA-FB-A7DR      TCGA-H6-8124      TCGA-H8-A6C1 
"LIMD1 WILD-TYPE" "LIMD1 WILD-TYPE" "LIMD1 WILD-TYPE" "LIMD1 WILD-TYPE" 
     TCGA-IB-7644      TCGA-IB-7649      TCGA-IB-7885      TCGA-IB-7886 
"LIMD1 WILD-TYPE" "LIMD1 WILD-TYPE" "LIMD1 WILD-TYPE" "LIMD1 WILD-TYPE" 
     TCGA-IB-7887      TCGA-IB-7891      TCGA-IB-8126      TCGA-IB-8127 
"LIMD1 WILD-TYPE" "LIMD1 WILD-TYPE" "LIMD1 WILD-TYPE" "LIMD1 WILD-TYPE" 
     TCGA-IB-A5SS      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"LIMD1 WILD-TYPE" "LIMD1 WILD-TYPE" "LIMD1 WILD-TYPE" "LIMD1 WILD-TYPE" 
D230V10, continuous
[1] "Remove cluster labels:" "LIMD1 MUTATED"         
clus
  LIMD1 MUTATED LIMD1 WILD-TYPE 
              1              18 
     TCGA-FB-A4P5      TCGA-FB-A4P6      TCGA-FB-A5VM      TCGA-FB-A78T 
"LIMD1 WILD-TYPE" "LIMD1 WILD-TYPE" "LIMD1 WILD-TYPE" "LIMD1 WILD-TYPE" 
     TCGA-FB-A7DR      TCGA-H6-8124      TCGA-H8-A6C1      TCGA-IB-7644 
"LIMD1 WILD-TYPE" "LIMD1 WILD-TYPE" "LIMD1 WILD-TYPE" "LIMD1 WILD-TYPE" 
     TCGA-IB-7649      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7891 
"LIMD1 WILD-TYPE" "LIMD1 WILD-TYPE" "LIMD1 WILD-TYPE" "LIMD1 WILD-TYPE" 
     TCGA-IB-8126      TCGA-IB-8127      TCGA-IB-A5SS      TCGA-IB-A6UG 
"LIMD1 WILD-TYPE" "LIMD1 WILD-TYPE" "LIMD1 WILD-TYPE" "LIMD1 WILD-TYPE" 
     TCGA-LB-A7SX      TCGA-OE-A75W 
"LIMD1 WILD-TYPE" "LIMD1 WILD-TYPE" 
                 vv
clus              R0 R1 RX
  LIMD1 MUTATED    3  2  0
  LIMD1 WILD-TYPE 39 22  2
D230V11, multiclass
    clus
vv   LIMD1 MUTATED LIMD1 WILD-TYPE
  R0             3              39
  R1             2              22
  RX             0               2
D230V12, continuous

Clustering(231) Variable = C15ORF52 MUTATION ANALYSIS
D231V1, survival
                    sevent
clus2                 0  1
  C15ORF52 MUTATED    2  2
  C15ORF52 WILD-TYPE 38 27
  C15ORF52 MUTATED C15ORF52 WILD-TYPE 
                 4                 65 
  C15ORF52 MUTATED C15ORF52 WILD-TYPE 
                 2                 27 
$`C15ORF52 MUTATED`
TCGA-F2-A44H TCGA-HZ-8002 TCGA-HZ-8005 TCGA-IB-7897 
       19.27         0.79         3.95        15.98 

$`C15ORF52 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-FB-A4P5 
       10.98         9.70        11.84         7.10         5.03         0.13 
TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR TCGA-FZ-5920 
       11.93        12.66         2.47         0.03         5.46         2.01 
TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7289 
       36.20        20.81        12.89         7.66        13.02         7.89 
TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 
        0.92         0.66         0.13         0.26        12.13        11.87 
TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8003 TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8636 
        0.26         0.62         0.69         0.92         0.53         0.16 
TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 
        2.99         0.76         0.95         6.38         1.51        11.41 
TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7651 TCGA-IB-7652 
       49.38         4.77        21.90        15.35        19.82        15.65 
TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 
       27.98         4.04         3.62        43.79        15.81        19.66 
TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP 
       16.04         3.85         0.56        17.16        10.82         9.86 
TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W 
        7.20        15.12         0.26         1.35         4.18         3.62 
TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
        8.12        13.68        16.80        14.14        18.67 

  C15ORF52 MUTATED C15ORF52 WILD-TYPE 
              0.79               0.03 
  C15ORF52 MUTATED C15ORF52 WILD-TYPE 
             19.27              49.38 
  C15ORF52 MUTATED C15ORF52 WILD-TYPE 
             9.965              7.660 
[1] "0.8 - 19.3 (10.0)" "0.0 - 49.4 (7.7)" 
        TCGA-F2-6879         TCGA-F2-6880         TCGA-F2-7273 
"C15ORF52 WILD-TYPE" "C15ORF52 WILD-TYPE" "C15ORF52 WILD-TYPE" 
        TCGA-F2-7276         TCGA-F2-A44G         TCGA-F2-A44H 
"C15ORF52 WILD-TYPE" "C15ORF52 WILD-TYPE"   "C15ORF52 MUTATED" 
        TCGA-FB-A4P5         TCGA-FB-A4P6         TCGA-FB-A545 
"C15ORF52 WILD-TYPE" "C15ORF52 WILD-TYPE" "C15ORF52 WILD-TYPE" 
        TCGA-FB-A5VM         TCGA-FB-A78T         TCGA-FB-A7DR 
"C15ORF52 WILD-TYPE" "C15ORF52 WILD-TYPE" "C15ORF52 WILD-TYPE" 
        TCGA-FZ-5920         TCGA-FZ-5922         TCGA-FZ-5923 
"C15ORF52 WILD-TYPE" "C15ORF52 WILD-TYPE" "C15ORF52 WILD-TYPE" 
        TCGA-H6-8124         TCGA-H6-A45N         TCGA-H8-A6C1 
"C15ORF52 WILD-TYPE" "C15ORF52 WILD-TYPE" "C15ORF52 WILD-TYPE" 
        TCGA-HZ-7289         TCGA-HZ-7918         TCGA-HZ-7919 
"C15ORF52 WILD-TYPE" "C15ORF52 WILD-TYPE" "C15ORF52 WILD-TYPE" 
        TCGA-HZ-7922         TCGA-HZ-7923         TCGA-HZ-7924 
"C15ORF52 WILD-TYPE" "C15ORF52 WILD-TYPE" "C15ORF52 WILD-TYPE" 
        TCGA-HZ-7925         TCGA-HZ-7926         TCGA-HZ-8001 
"C15ORF52 WILD-TYPE" "C15ORF52 WILD-TYPE" "C15ORF52 WILD-TYPE" 
        TCGA-HZ-8002         TCGA-HZ-8003         TCGA-HZ-8005 
  "C15ORF52 MUTATED" "C15ORF52 WILD-TYPE"   "C15ORF52 MUTATED" 
        TCGA-HZ-8315         TCGA-HZ-8317         TCGA-HZ-8636 
"C15ORF52 WILD-TYPE" "C15ORF52 WILD-TYPE" "C15ORF52 WILD-TYPE" 
        TCGA-HZ-8638         TCGA-HZ-A49G         TCGA-HZ-A49H 
"C15ORF52 WILD-TYPE" "C15ORF52 WILD-TYPE" "C15ORF52 WILD-TYPE" 
        TCGA-HZ-A4BH         TCGA-HZ-A4BK         TCGA-IB-7644 
"C15ORF52 WILD-TYPE" "C15ORF52 WILD-TYPE" "C15ORF52 WILD-TYPE" 
        TCGA-IB-7645         TCGA-IB-7646         TCGA-IB-7647 
"C15ORF52 WILD-TYPE" "C15ORF52 WILD-TYPE" "C15ORF52 WILD-TYPE" 
        TCGA-IB-7649         TCGA-IB-7651         TCGA-IB-7652 
"C15ORF52 WILD-TYPE" "C15ORF52 WILD-TYPE" "C15ORF52 WILD-TYPE" 
        TCGA-IB-7885         TCGA-IB-7886         TCGA-IB-7887 
"C15ORF52 WILD-TYPE" "C15ORF52 WILD-TYPE" "C15ORF52 WILD-TYPE" 
        TCGA-IB-7888         TCGA-IB-7889         TCGA-IB-7890 
"C15ORF52 WILD-TYPE" "C15ORF52 WILD-TYPE" "C15ORF52 WILD-TYPE" 
        TCGA-IB-7891         TCGA-IB-7893         TCGA-IB-7897 
"C15ORF52 WILD-TYPE" "C15ORF52 WILD-TYPE"   "C15ORF52 MUTATED" 
        TCGA-IB-8126         TCGA-IB-8127         TCGA-IB-A5SO 
"C15ORF52 WILD-TYPE" "C15ORF52 WILD-TYPE" "C15ORF52 WILD-TYPE" 
        TCGA-IB-A5SP         TCGA-IB-A5SQ         TCGA-IB-A5SS 
"C15ORF52 WILD-TYPE" "C15ORF52 WILD-TYPE" "C15ORF52 WILD-TYPE" 
        TCGA-IB-A5ST         TCGA-IB-A6UG         TCGA-LB-A7SX 
"C15ORF52 WILD-TYPE" "C15ORF52 WILD-TYPE" "C15ORF52 WILD-TYPE" 
        TCGA-OE-A75W         TCGA-PZ-A5RE         TCGA-Q3-A5QY 
"C15ORF52 WILD-TYPE" "C15ORF52 WILD-TYPE" "C15ORF52 WILD-TYPE" 
        TCGA-US-A779         TCGA-US-A77E         TCGA-US-A77J 
"C15ORF52 WILD-TYPE" "C15ORF52 WILD-TYPE" "C15ORF52 WILD-TYPE" 
        TCGA-F2-6879         TCGA-F2-6880         TCGA-F2-7273 
"C15ORF52 WILD-TYPE" "C15ORF52 WILD-TYPE" "C15ORF52 WILD-TYPE" 
        TCGA-F2-7276         TCGA-F2-A44G         TCGA-F2-A44H 
"C15ORF52 WILD-TYPE" "C15ORF52 WILD-TYPE"   "C15ORF52 MUTATED" 
        TCGA-FB-A4P5         TCGA-FB-A4P6         TCGA-FB-A545 
"C15ORF52 WILD-TYPE" "C15ORF52 WILD-TYPE" "C15ORF52 WILD-TYPE" 
        TCGA-FB-A5VM         TCGA-FB-A78T         TCGA-FB-A7DR 
"C15ORF52 WILD-TYPE" "C15ORF52 WILD-TYPE" "C15ORF52 WILD-TYPE" 
        TCGA-FZ-5920         TCGA-FZ-5922         TCGA-FZ-5923 
"C15ORF52 WILD-TYPE" "C15ORF52 WILD-TYPE" "C15ORF52 WILD-TYPE" 
        TCGA-H6-8124         TCGA-H6-A45N         TCGA-H8-A6C1 
"C15ORF52 WILD-TYPE" "C15ORF52 WILD-TYPE" "C15ORF52 WILD-TYPE" 
        TCGA-HZ-7289         TCGA-HZ-7918         TCGA-HZ-7919 
"C15ORF52 WILD-TYPE" "C15ORF52 WILD-TYPE" "C15ORF52 WILD-TYPE" 
        TCGA-HZ-7922         TCGA-HZ-7923         TCGA-HZ-7924 
"C15ORF52 WILD-TYPE" "C15ORF52 WILD-TYPE" "C15ORF52 WILD-TYPE" 
        TCGA-HZ-7925         TCGA-HZ-7926         TCGA-HZ-8001 
"C15ORF52 WILD-TYPE" "C15ORF52 WILD-TYPE" "C15ORF52 WILD-TYPE" 
        TCGA-HZ-8002         TCGA-HZ-8003         TCGA-HZ-8005 
  "C15ORF52 MUTATED" "C15ORF52 WILD-TYPE"   "C15ORF52 MUTATED" 
        TCGA-HZ-8315         TCGA-HZ-8317         TCGA-HZ-8636 
"C15ORF52 WILD-TYPE" "C15ORF52 WILD-TYPE" "C15ORF52 WILD-TYPE" 
        TCGA-HZ-8638         TCGA-HZ-A49G         TCGA-HZ-A49H 
"C15ORF52 WILD-TYPE" "C15ORF52 WILD-TYPE" "C15ORF52 WILD-TYPE" 
        TCGA-HZ-A4BH         TCGA-HZ-A4BK         TCGA-IB-7644 
"C15ORF52 WILD-TYPE" "C15ORF52 WILD-TYPE" "C15ORF52 WILD-TYPE" 
        TCGA-IB-7645         TCGA-IB-7646         TCGA-IB-7647 
"C15ORF52 WILD-TYPE" "C15ORF52 WILD-TYPE" "C15ORF52 WILD-TYPE" 
        TCGA-IB-7649         TCGA-IB-7651         TCGA-IB-7652 
"C15ORF52 WILD-TYPE" "C15ORF52 WILD-TYPE" "C15ORF52 WILD-TYPE" 
        TCGA-IB-7885         TCGA-IB-7886         TCGA-IB-7887 
"C15ORF52 WILD-TYPE" "C15ORF52 WILD-TYPE" "C15ORF52 WILD-TYPE" 
        TCGA-IB-7888         TCGA-IB-7889         TCGA-IB-7890 
"C15ORF52 WILD-TYPE" "C15ORF52 WILD-TYPE" "C15ORF52 WILD-TYPE" 
        TCGA-IB-7891         TCGA-IB-7893         TCGA-IB-7897 
"C15ORF52 WILD-TYPE" "C15ORF52 WILD-TYPE"   "C15ORF52 MUTATED" 
        TCGA-IB-8126         TCGA-IB-8127         TCGA-IB-A5SO 
"C15ORF52 WILD-TYPE" "C15ORF52 WILD-TYPE" "C15ORF52 WILD-TYPE" 
        TCGA-IB-A5SP         TCGA-IB-A5SQ         TCGA-IB-A5SS 
"C15ORF52 WILD-TYPE" "C15ORF52 WILD-TYPE" "C15ORF52 WILD-TYPE" 
        TCGA-IB-A5ST         TCGA-IB-A6UG         TCGA-LB-A7SX 
"C15ORF52 WILD-TYPE" "C15ORF52 WILD-TYPE" "C15ORF52 WILD-TYPE" 
        TCGA-OE-A75W         TCGA-PZ-A5RE         TCGA-Q3-A5QY 
"C15ORF52 WILD-TYPE" "C15ORF52 WILD-TYPE" "C15ORF52 WILD-TYPE" 
        TCGA-US-A779         TCGA-US-A77E         TCGA-US-A77J 
"C15ORF52 WILD-TYPE" "C15ORF52 WILD-TYPE" "C15ORF52 WILD-TYPE" 
        TCGA-F2-6879         TCGA-F2-6880         TCGA-F2-7273 
"C15ORF52 WILD-TYPE" "C15ORF52 WILD-TYPE" "C15ORF52 WILD-TYPE" 
        TCGA-F2-7276         TCGA-F2-A44G         TCGA-F2-A44H 
"C15ORF52 WILD-TYPE" "C15ORF52 WILD-TYPE"   "C15ORF52 MUTATED" 
        TCGA-FB-A4P5         TCGA-FB-A4P6         TCGA-FB-A545 
"C15ORF52 WILD-TYPE" "C15ORF52 WILD-TYPE" "C15ORF52 WILD-TYPE" 
        TCGA-FB-A5VM         TCGA-FB-A78T         TCGA-FB-A7DR 
"C15ORF52 WILD-TYPE" "C15ORF52 WILD-TYPE" "C15ORF52 WILD-TYPE" 
        TCGA-FZ-5920         TCGA-FZ-5922         TCGA-FZ-5923 
"C15ORF52 WILD-TYPE" "C15ORF52 WILD-TYPE" "C15ORF52 WILD-TYPE" 
        TCGA-H6-8124         TCGA-H6-A45N         TCGA-H8-A6C1 
"C15ORF52 WILD-TYPE" "C15ORF52 WILD-TYPE" "C15ORF52 WILD-TYPE" 
        TCGA-HZ-7289         TCGA-HZ-7918         TCGA-HZ-7919 
"C15ORF52 WILD-TYPE" "C15ORF52 WILD-TYPE" "C15ORF52 WILD-TYPE" 
        TCGA-HZ-7922         TCGA-HZ-7923         TCGA-HZ-7924 
"C15ORF52 WILD-TYPE" "C15ORF52 WILD-TYPE" "C15ORF52 WILD-TYPE" 
        TCGA-HZ-7925         TCGA-HZ-7926         TCGA-HZ-8001 
"C15ORF52 WILD-TYPE" "C15ORF52 WILD-TYPE" "C15ORF52 WILD-TYPE" 
        TCGA-HZ-8002         TCGA-HZ-8003         TCGA-HZ-8005 
  "C15ORF52 MUTATED" "C15ORF52 WILD-TYPE"   "C15ORF52 MUTATED" 
        TCGA-HZ-8315         TCGA-HZ-8317         TCGA-HZ-8636 
"C15ORF52 WILD-TYPE" "C15ORF52 WILD-TYPE" "C15ORF52 WILD-TYPE" 
        TCGA-HZ-8638         TCGA-HZ-A49G         TCGA-HZ-A49H 
"C15ORF52 WILD-TYPE" "C15ORF52 WILD-TYPE" "C15ORF52 WILD-TYPE" 
        TCGA-HZ-A4BH         TCGA-HZ-A4BK         TCGA-IB-7644 
"C15ORF52 WILD-TYPE" "C15ORF52 WILD-TYPE" "C15ORF52 WILD-TYPE" 
        TCGA-IB-7645         TCGA-IB-7646         TCGA-IB-7647 
"C15ORF52 WILD-TYPE" "C15ORF52 WILD-TYPE" "C15ORF52 WILD-TYPE" 
        TCGA-IB-7649         TCGA-IB-7651         TCGA-IB-7652 
"C15ORF52 WILD-TYPE" "C15ORF52 WILD-TYPE" "C15ORF52 WILD-TYPE" 
        TCGA-IB-7885         TCGA-IB-7886         TCGA-IB-7887 
"C15ORF52 WILD-TYPE" "C15ORF52 WILD-TYPE" "C15ORF52 WILD-TYPE" 
        TCGA-IB-7888         TCGA-IB-7889         TCGA-IB-7890 
"C15ORF52 WILD-TYPE" "C15ORF52 WILD-TYPE" "C15ORF52 WILD-TYPE" 
        TCGA-IB-7891         TCGA-IB-7893         TCGA-IB-7897 
"C15ORF52 WILD-TYPE" "C15ORF52 WILD-TYPE"   "C15ORF52 MUTATED" 
        TCGA-IB-8126         TCGA-IB-8127         TCGA-IB-A5SO 
"C15ORF52 WILD-TYPE" "C15ORF52 WILD-TYPE" "C15ORF52 WILD-TYPE" 
        TCGA-IB-A5SP         TCGA-IB-A5SQ         TCGA-IB-A5SS 
"C15ORF52 WILD-TYPE" "C15ORF52 WILD-TYPE" "C15ORF52 WILD-TYPE" 
        TCGA-IB-A5ST         TCGA-IB-A6UG         TCGA-LB-A7SX 
"C15ORF52 WILD-TYPE" "C15ORF52 WILD-TYPE" "C15ORF52 WILD-TYPE" 
        TCGA-OE-A75W         TCGA-PZ-A5RE         TCGA-Q3-A5QY 
"C15ORF52 WILD-TYPE" "C15ORF52 WILD-TYPE" "C15ORF52 WILD-TYPE" 
        TCGA-US-A779         TCGA-US-A77E         TCGA-US-A77J 
"C15ORF52 WILD-TYPE" "C15ORF52 WILD-TYPE" "C15ORF52 WILD-TYPE" 
[1] "hr=" "1.2"
D231V2, continuous
                    vv
clus                 STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  C15ORF52 MUTATED          0        0         1         3         0        0
  C15ORF52 WILD-TYPE        1        4        10        48         2        3
D231V3, multiclass
                    vv
clus                 T1+T2 T3+T4
  C15ORF52 MUTATED       0     4
  C15ORF52 WILD-TYPE     6    62
D231V4, multiclass
       clus
vv      C15ORF52 MUTATED C15ORF52 WILD-TYPE
  T1+T2                0                  6
  T3+T4                4                 62
D231V5, binary
                    cls
clus                  0  1
  C15ORF52 MUTATED    1  3
  C15ORF52 WILD-TYPE 16 51
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  C15ORF52 MUTATED      1    3
  C15ORF52 WILD-TYPE   16   51
   clus
vv  C15ORF52 MUTATED C15ORF52 WILD-TYPE
  0                1                 16
  1                3                 51
                    vv
clus                 M0 M1 MX
  C15ORF52 MUTATED    2  0  2
  C15ORF52 WILD-TYPE 37  3 28
D231V6, multiclass
    clus
vv   C15ORF52 MUTATED C15ORF52 WILD-TYPE
  M0                2                 37
  M1                0                  3
  MX                2                 28
D231V7, binary
                    cls
clus                  0  1
  C15ORF52 MUTATED    1  3
  C15ORF52 WILD-TYPE 35 33
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  C15ORF52 MUTATED      1    3
  C15ORF52 WILD-TYPE   35   33
        clus
vv       C15ORF52 MUTATED C15ORF52 WILD-TYPE
  FEMALE                1                 35
  MALE                  3                 33
                    vv
clus                 PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  C15ORF52 MUTATED                                     4
  C15ORF52 WILD-TYPE                                  61
                    vv
clus                 PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  C15ORF52 MUTATED                                       0
  C15ORF52 WILD-TYPE                                     4
                    vv
clus                 PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  C15ORF52 MUTATED                                                  0
  C15ORF52 WILD-TYPE                                                2
D231V8, multiclass
                                                  clus
vv                                                 C15ORF52 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                             4
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                           0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                0
                                                  clus
vv                                                 C15ORF52 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                              61
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                             4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                  2
D231V9, continuous
D231V10, continuous
                    vv
clus                 R0 R1 RX
  C15ORF52 MUTATED    3  1  0
  C15ORF52 WILD-TYPE 39 23  2
D231V11, multiclass
    clus
vv   C15ORF52 MUTATED C15ORF52 WILD-TYPE
  R0                3                 39
  R1                1                 23
  RX                0                  2
D231V12, continuous

Clustering(232) Variable = ZNF552 MUTATION ANALYSIS
D232V1, survival
                  sevent
clus2               0  1
  ZNF552 MUTATED    6  3
  ZNF552 WILD-TYPE 34 26
  ZNF552 MUTATED ZNF552 WILD-TYPE 
               9               60 
  ZNF552 MUTATED ZNF552 WILD-TYPE 
               3               26 
$`ZNF552 MUTATED`
TCGA-F2-A44H TCGA-FB-A4P6 TCGA-H6-8124 TCGA-HZ-7922 TCGA-HZ-A4BH TCGA-IB-7645 
       19.27        11.93        12.89         0.13         6.38        49.38 
TCGA-IB-7649 TCGA-IB-7651 TCGA-IB-8127 
       15.35        19.82        17.16 

$`ZNF552 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-FB-A4P5 
       10.98         9.70        11.84         7.10         5.03         0.13 
TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR TCGA-FZ-5920 TCGA-FZ-5922 
       12.66         2.47         0.03         5.46         2.01        36.20 
TCGA-FZ-5923 TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-7919 
       20.81         7.66        13.02         7.89         0.92         0.66 
TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 
        0.26        12.13        11.87         0.26         0.62         0.79 
TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8636 TCGA-HZ-8638 
        0.69         3.95         0.92         0.53         0.16         2.99 
TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7646 TCGA-IB-7647 
        0.76         0.95         1.51        11.41         4.77        21.90 
TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 
       15.65        27.98         4.04         3.62        43.79        15.81 
TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-A5SO 
       19.66        16.04         3.85        15.98         0.56        10.82 
TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX 
        9.86         7.20        15.12         0.26         1.35         4.18 
TCGA-OE-A75W TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
        3.62         8.12        13.68        16.80        14.14        18.67 

  ZNF552 MUTATED ZNF552 WILD-TYPE 
            0.13             0.03 
  ZNF552 MUTATED ZNF552 WILD-TYPE 
           49.38            43.79 
  ZNF552 MUTATED ZNF552 WILD-TYPE 
           15.35             6.28 
[1] "0.1 - 49.4 (15.3)" "0.0 - 43.8 (6.3)" 
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
"ZNF552 WILD-TYPE" "ZNF552 WILD-TYPE" "ZNF552 WILD-TYPE" "ZNF552 WILD-TYPE" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"ZNF552 WILD-TYPE"   "ZNF552 MUTATED" "ZNF552 WILD-TYPE"   "ZNF552 MUTATED" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
"ZNF552 WILD-TYPE" "ZNF552 WILD-TYPE" "ZNF552 WILD-TYPE" "ZNF552 WILD-TYPE" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"ZNF552 WILD-TYPE" "ZNF552 WILD-TYPE" "ZNF552 WILD-TYPE"   "ZNF552 MUTATED" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
"ZNF552 WILD-TYPE" "ZNF552 WILD-TYPE" "ZNF552 WILD-TYPE" "ZNF552 WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
"ZNF552 WILD-TYPE"   "ZNF552 MUTATED" "ZNF552 WILD-TYPE" "ZNF552 WILD-TYPE" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"ZNF552 WILD-TYPE" "ZNF552 WILD-TYPE" "ZNF552 WILD-TYPE" "ZNF552 WILD-TYPE" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
"ZNF552 WILD-TYPE" "ZNF552 WILD-TYPE" "ZNF552 WILD-TYPE" "ZNF552 WILD-TYPE" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
"ZNF552 WILD-TYPE" "ZNF552 WILD-TYPE" "ZNF552 WILD-TYPE" "ZNF552 WILD-TYPE" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
  "ZNF552 MUTATED" "ZNF552 WILD-TYPE" "ZNF552 WILD-TYPE"   "ZNF552 MUTATED" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
"ZNF552 WILD-TYPE" "ZNF552 WILD-TYPE"   "ZNF552 MUTATED"   "ZNF552 MUTATED" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
"ZNF552 WILD-TYPE" "ZNF552 WILD-TYPE" "ZNF552 WILD-TYPE" "ZNF552 WILD-TYPE" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
"ZNF552 WILD-TYPE" "ZNF552 WILD-TYPE" "ZNF552 WILD-TYPE" "ZNF552 WILD-TYPE" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
"ZNF552 WILD-TYPE" "ZNF552 WILD-TYPE" "ZNF552 WILD-TYPE"   "ZNF552 MUTATED" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"ZNF552 WILD-TYPE" "ZNF552 WILD-TYPE" "ZNF552 WILD-TYPE" "ZNF552 WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"ZNF552 WILD-TYPE" "ZNF552 WILD-TYPE" "ZNF552 WILD-TYPE" "ZNF552 WILD-TYPE" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
"ZNF552 WILD-TYPE" "ZNF552 WILD-TYPE" "ZNF552 WILD-TYPE" "ZNF552 WILD-TYPE" 
      TCGA-US-A77J 
"ZNF552 WILD-TYPE" 
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
"ZNF552 WILD-TYPE" "ZNF552 WILD-TYPE" "ZNF552 WILD-TYPE" "ZNF552 WILD-TYPE" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"ZNF552 WILD-TYPE"   "ZNF552 MUTATED" "ZNF552 WILD-TYPE"   "ZNF552 MUTATED" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
"ZNF552 WILD-TYPE" "ZNF552 WILD-TYPE" "ZNF552 WILD-TYPE" "ZNF552 WILD-TYPE" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"ZNF552 WILD-TYPE" "ZNF552 WILD-TYPE" "ZNF552 WILD-TYPE"   "ZNF552 MUTATED" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
"ZNF552 WILD-TYPE" "ZNF552 WILD-TYPE" "ZNF552 WILD-TYPE" "ZNF552 WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
"ZNF552 WILD-TYPE"   "ZNF552 MUTATED" "ZNF552 WILD-TYPE" "ZNF552 WILD-TYPE" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"ZNF552 WILD-TYPE" "ZNF552 WILD-TYPE" "ZNF552 WILD-TYPE" "ZNF552 WILD-TYPE" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
"ZNF552 WILD-TYPE" "ZNF552 WILD-TYPE" "ZNF552 WILD-TYPE" "ZNF552 WILD-TYPE" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
"ZNF552 WILD-TYPE" "ZNF552 WILD-TYPE" "ZNF552 WILD-TYPE" "ZNF552 WILD-TYPE" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
  "ZNF552 MUTATED" "ZNF552 WILD-TYPE" "ZNF552 WILD-TYPE"   "ZNF552 MUTATED" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
"ZNF552 WILD-TYPE" "ZNF552 WILD-TYPE"   "ZNF552 MUTATED"   "ZNF552 MUTATED" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
"ZNF552 WILD-TYPE" "ZNF552 WILD-TYPE" "ZNF552 WILD-TYPE" "ZNF552 WILD-TYPE" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
"ZNF552 WILD-TYPE" "ZNF552 WILD-TYPE" "ZNF552 WILD-TYPE" "ZNF552 WILD-TYPE" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
"ZNF552 WILD-TYPE" "ZNF552 WILD-TYPE" "ZNF552 WILD-TYPE"   "ZNF552 MUTATED" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"ZNF552 WILD-TYPE" "ZNF552 WILD-TYPE" "ZNF552 WILD-TYPE" "ZNF552 WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"ZNF552 WILD-TYPE" "ZNF552 WILD-TYPE" "ZNF552 WILD-TYPE" "ZNF552 WILD-TYPE" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
"ZNF552 WILD-TYPE" "ZNF552 WILD-TYPE" "ZNF552 WILD-TYPE" "ZNF552 WILD-TYPE" 
      TCGA-US-A77J 
"ZNF552 WILD-TYPE" 
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
"ZNF552 WILD-TYPE" "ZNF552 WILD-TYPE" "ZNF552 WILD-TYPE" "ZNF552 WILD-TYPE" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"ZNF552 WILD-TYPE"   "ZNF552 MUTATED" "ZNF552 WILD-TYPE"   "ZNF552 MUTATED" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
"ZNF552 WILD-TYPE" "ZNF552 WILD-TYPE" "ZNF552 WILD-TYPE" "ZNF552 WILD-TYPE" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"ZNF552 WILD-TYPE" "ZNF552 WILD-TYPE" "ZNF552 WILD-TYPE"   "ZNF552 MUTATED" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
"ZNF552 WILD-TYPE" "ZNF552 WILD-TYPE" "ZNF552 WILD-TYPE" "ZNF552 WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
"ZNF552 WILD-TYPE"   "ZNF552 MUTATED" "ZNF552 WILD-TYPE" "ZNF552 WILD-TYPE" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"ZNF552 WILD-TYPE" "ZNF552 WILD-TYPE" "ZNF552 WILD-TYPE" "ZNF552 WILD-TYPE" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
"ZNF552 WILD-TYPE" "ZNF552 WILD-TYPE" "ZNF552 WILD-TYPE" "ZNF552 WILD-TYPE" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
"ZNF552 WILD-TYPE" "ZNF552 WILD-TYPE" "ZNF552 WILD-TYPE" "ZNF552 WILD-TYPE" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
  "ZNF552 MUTATED" "ZNF552 WILD-TYPE" "ZNF552 WILD-TYPE"   "ZNF552 MUTATED" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
"ZNF552 WILD-TYPE" "ZNF552 WILD-TYPE"   "ZNF552 MUTATED"   "ZNF552 MUTATED" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
"ZNF552 WILD-TYPE" "ZNF552 WILD-TYPE" "ZNF552 WILD-TYPE" "ZNF552 WILD-TYPE" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
"ZNF552 WILD-TYPE" "ZNF552 WILD-TYPE" "ZNF552 WILD-TYPE" "ZNF552 WILD-TYPE" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
"ZNF552 WILD-TYPE" "ZNF552 WILD-TYPE" "ZNF552 WILD-TYPE"   "ZNF552 MUTATED" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"ZNF552 WILD-TYPE" "ZNF552 WILD-TYPE" "ZNF552 WILD-TYPE" "ZNF552 WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"ZNF552 WILD-TYPE" "ZNF552 WILD-TYPE" "ZNF552 WILD-TYPE" "ZNF552 WILD-TYPE" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
"ZNF552 WILD-TYPE" "ZNF552 WILD-TYPE" "ZNF552 WILD-TYPE" "ZNF552 WILD-TYPE" 
      TCGA-US-A77J 
"ZNF552 WILD-TYPE" 
[1] "hr=" "4.2"
D232V2, continuous
                  vv
clus               STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  ZNF552 MUTATED          0        0         1         8         0        0
  ZNF552 WILD-TYPE        1        4        10        43         2        3
D232V3, multiclass
                  vv
clus               T1+T2 T3+T4
  ZNF552 MUTATED       0     9
  ZNF552 WILD-TYPE     6    57
D232V4, multiclass
       clus
vv      ZNF552 MUTATED ZNF552 WILD-TYPE
  T1+T2              0                6
  T3+T4              9               57
D232V5, binary
                  cls
clus                0  1
  ZNF552 MUTATED    1  8
  ZNF552 WILD-TYPE 16 46
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ZNF552 MUTATED      1    8
  ZNF552 WILD-TYPE   16   46
   clus
vv  ZNF552 MUTATED ZNF552 WILD-TYPE
  0              1               16
  1              8               46
                  vv
clus               M0 M1 MX
  ZNF552 MUTATED    6  0  3
  ZNF552 WILD-TYPE 33  3 27
D232V6, multiclass
    clus
vv   ZNF552 MUTATED ZNF552 WILD-TYPE
  M0              6               33
  M1              0                3
  MX              3               27
D232V7, binary
                  cls
clus                0  1
  ZNF552 MUTATED    5  4
  ZNF552 WILD-TYPE 31 32
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ZNF552 MUTATED      5    4
  ZNF552 WILD-TYPE   31   32
        clus
vv       ZNF552 MUTATED ZNF552 WILD-TYPE
  FEMALE              5               31
  MALE                4               32
                  vv
clus               PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  ZNF552 MUTATED                                     9
  ZNF552 WILD-TYPE                                  56
                  vv
clus               PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  ZNF552 MUTATED                                       0
  ZNF552 WILD-TYPE                                     4
                  vv
clus               PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  ZNF552 MUTATED                                                  0
  ZNF552 WILD-TYPE                                                2
D232V8, multiclass
                                                  clus
vv                                                 ZNF552 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                           9
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                         0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA              0
                                                  clus
vv                                                 ZNF552 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                            56
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                           4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                2
D232V9, continuous
D232V10, continuous
                  vv
clus               R0 R1 RX
  ZNF552 MUTATED    5  3  0
  ZNF552 WILD-TYPE 37 21  2
D232V11, multiclass
    clus
vv   ZNF552 MUTATED ZNF552 WILD-TYPE
  R0              5               37
  R1              3               21
  RX              0                2
D232V12, continuous

Clustering(233) Variable = TFDP2 MUTATION ANALYSIS
D233V1, survival
                 sevent
clus2              0  1
  TFDP2 MUTATED    2  0
  TFDP2 WILD-TYPE 38 29
  TFDP2 MUTATED TFDP2 WILD-TYPE 
              2              67 
  TFDP2 MUTATED TFDP2 WILD-TYPE 
              0              29 
$`TFDP2 MUTATED`
TCGA-F2-6880 TCGA-HZ-7919 
        9.70         0.66 

$`TFDP2 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H TCGA-FB-A4P5 
       10.98        11.84         7.10         5.03        19.27         0.13 
TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR TCGA-FZ-5920 
       11.93        12.66         2.47         0.03         5.46         2.01 
TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7289 
       36.20        20.81        12.89         7.66        13.02         7.89 
TCGA-HZ-7918 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 
        0.92         0.13         0.26        12.13        11.87         0.26 
TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 
        0.62         0.79         0.69         3.95         0.92         0.53 
TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK 
        0.16         2.99         0.76         0.95         6.38         1.51 
TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7651 
       11.41        49.38         4.77        21.90        15.35        19.82 
TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 
       15.65        27.98         4.04         3.62        43.79        15.81 
TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-8127 
       19.66        16.04         3.85        15.98         0.56        17.16 
TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG 
       10.82         9.86         7.20        15.12         0.26         1.35 
TCGA-LB-A7SX TCGA-OE-A75W TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E 
        4.18         3.62         8.12        13.68        16.80        14.14 
TCGA-US-A77J 
       18.67 

  TFDP2 MUTATED TFDP2 WILD-TYPE 
           0.66            0.03 
  TFDP2 MUTATED TFDP2 WILD-TYPE 
           9.70           49.38 
  TFDP2 MUTATED TFDP2 WILD-TYPE 
           5.18            7.66 
[1] "0.7 - 9.7 (5.2)"  "0.0 - 49.4 (7.7)"
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"TFDP2 WILD-TYPE"   "TFDP2 MUTATED" "TFDP2 WILD-TYPE" "TFDP2 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"TFDP2 WILD-TYPE" "TFDP2 WILD-TYPE" "TFDP2 WILD-TYPE" "TFDP2 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"TFDP2 WILD-TYPE" "TFDP2 WILD-TYPE" "TFDP2 WILD-TYPE" "TFDP2 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"TFDP2 WILD-TYPE" "TFDP2 WILD-TYPE" "TFDP2 WILD-TYPE" "TFDP2 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"TFDP2 WILD-TYPE" "TFDP2 WILD-TYPE" "TFDP2 WILD-TYPE" "TFDP2 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
  "TFDP2 MUTATED" "TFDP2 WILD-TYPE" "TFDP2 WILD-TYPE" "TFDP2 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"TFDP2 WILD-TYPE" "TFDP2 WILD-TYPE" "TFDP2 WILD-TYPE" "TFDP2 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"TFDP2 WILD-TYPE" "TFDP2 WILD-TYPE" "TFDP2 WILD-TYPE" "TFDP2 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"TFDP2 WILD-TYPE" "TFDP2 WILD-TYPE" "TFDP2 WILD-TYPE" "TFDP2 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"TFDP2 WILD-TYPE" "TFDP2 WILD-TYPE" "TFDP2 WILD-TYPE" "TFDP2 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"TFDP2 WILD-TYPE" "TFDP2 WILD-TYPE" "TFDP2 WILD-TYPE" "TFDP2 WILD-TYPE" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"TFDP2 WILD-TYPE" "TFDP2 WILD-TYPE" "TFDP2 WILD-TYPE" "TFDP2 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"TFDP2 WILD-TYPE" "TFDP2 WILD-TYPE" "TFDP2 WILD-TYPE" "TFDP2 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"TFDP2 WILD-TYPE" "TFDP2 WILD-TYPE" "TFDP2 WILD-TYPE" "TFDP2 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"TFDP2 WILD-TYPE" "TFDP2 WILD-TYPE" "TFDP2 WILD-TYPE" "TFDP2 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"TFDP2 WILD-TYPE" "TFDP2 WILD-TYPE" "TFDP2 WILD-TYPE" "TFDP2 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"TFDP2 WILD-TYPE" "TFDP2 WILD-TYPE" "TFDP2 WILD-TYPE" "TFDP2 WILD-TYPE" 
     TCGA-US-A77J 
"TFDP2 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"TFDP2 WILD-TYPE"   "TFDP2 MUTATED" "TFDP2 WILD-TYPE" "TFDP2 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"TFDP2 WILD-TYPE" "TFDP2 WILD-TYPE" "TFDP2 WILD-TYPE" "TFDP2 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"TFDP2 WILD-TYPE" "TFDP2 WILD-TYPE" "TFDP2 WILD-TYPE" "TFDP2 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"TFDP2 WILD-TYPE" "TFDP2 WILD-TYPE" "TFDP2 WILD-TYPE" "TFDP2 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"TFDP2 WILD-TYPE" "TFDP2 WILD-TYPE" "TFDP2 WILD-TYPE" "TFDP2 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
  "TFDP2 MUTATED" "TFDP2 WILD-TYPE" "TFDP2 WILD-TYPE" "TFDP2 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"TFDP2 WILD-TYPE" "TFDP2 WILD-TYPE" "TFDP2 WILD-TYPE" "TFDP2 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"TFDP2 WILD-TYPE" "TFDP2 WILD-TYPE" "TFDP2 WILD-TYPE" "TFDP2 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"TFDP2 WILD-TYPE" "TFDP2 WILD-TYPE" "TFDP2 WILD-TYPE" "TFDP2 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"TFDP2 WILD-TYPE" "TFDP2 WILD-TYPE" "TFDP2 WILD-TYPE" "TFDP2 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"TFDP2 WILD-TYPE" "TFDP2 WILD-TYPE" "TFDP2 WILD-TYPE" "TFDP2 WILD-TYPE" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"TFDP2 WILD-TYPE" "TFDP2 WILD-TYPE" "TFDP2 WILD-TYPE" "TFDP2 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"TFDP2 WILD-TYPE" "TFDP2 WILD-TYPE" "TFDP2 WILD-TYPE" "TFDP2 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"TFDP2 WILD-TYPE" "TFDP2 WILD-TYPE" "TFDP2 WILD-TYPE" "TFDP2 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"TFDP2 WILD-TYPE" "TFDP2 WILD-TYPE" "TFDP2 WILD-TYPE" "TFDP2 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"TFDP2 WILD-TYPE" "TFDP2 WILD-TYPE" "TFDP2 WILD-TYPE" "TFDP2 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"TFDP2 WILD-TYPE" "TFDP2 WILD-TYPE" "TFDP2 WILD-TYPE" "TFDP2 WILD-TYPE" 
     TCGA-US-A77J 
"TFDP2 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"TFDP2 WILD-TYPE"   "TFDP2 MUTATED" "TFDP2 WILD-TYPE" "TFDP2 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"TFDP2 WILD-TYPE" "TFDP2 WILD-TYPE" "TFDP2 WILD-TYPE" "TFDP2 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"TFDP2 WILD-TYPE" "TFDP2 WILD-TYPE" "TFDP2 WILD-TYPE" "TFDP2 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"TFDP2 WILD-TYPE" "TFDP2 WILD-TYPE" "TFDP2 WILD-TYPE" "TFDP2 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"TFDP2 WILD-TYPE" "TFDP2 WILD-TYPE" "TFDP2 WILD-TYPE" "TFDP2 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
  "TFDP2 MUTATED" "TFDP2 WILD-TYPE" "TFDP2 WILD-TYPE" "TFDP2 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"TFDP2 WILD-TYPE" "TFDP2 WILD-TYPE" "TFDP2 WILD-TYPE" "TFDP2 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"TFDP2 WILD-TYPE" "TFDP2 WILD-TYPE" "TFDP2 WILD-TYPE" "TFDP2 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"TFDP2 WILD-TYPE" "TFDP2 WILD-TYPE" "TFDP2 WILD-TYPE" "TFDP2 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"TFDP2 WILD-TYPE" "TFDP2 WILD-TYPE" "TFDP2 WILD-TYPE" "TFDP2 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"TFDP2 WILD-TYPE" "TFDP2 WILD-TYPE" "TFDP2 WILD-TYPE" "TFDP2 WILD-TYPE" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"TFDP2 WILD-TYPE" "TFDP2 WILD-TYPE" "TFDP2 WILD-TYPE" "TFDP2 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"TFDP2 WILD-TYPE" "TFDP2 WILD-TYPE" "TFDP2 WILD-TYPE" "TFDP2 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"TFDP2 WILD-TYPE" "TFDP2 WILD-TYPE" "TFDP2 WILD-TYPE" "TFDP2 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"TFDP2 WILD-TYPE" "TFDP2 WILD-TYPE" "TFDP2 WILD-TYPE" "TFDP2 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"TFDP2 WILD-TYPE" "TFDP2 WILD-TYPE" "TFDP2 WILD-TYPE" "TFDP2 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"TFDP2 WILD-TYPE" "TFDP2 WILD-TYPE" "TFDP2 WILD-TYPE" "TFDP2 WILD-TYPE" 
     TCGA-US-A77J 
"TFDP2 WILD-TYPE" 
[1] "Remove cluster labels:" "TFDP2 MUTATED"         
clus
  TFDP2 MUTATED TFDP2 WILD-TYPE 
              2              67 
     TCGA-F2-6879      TCGA-F2-7273      TCGA-F2-7276      TCGA-F2-A44G 
"TFDP2 WILD-TYPE" "TFDP2 WILD-TYPE" "TFDP2 WILD-TYPE" "TFDP2 WILD-TYPE" 
     TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6      TCGA-FB-A545 
"TFDP2 WILD-TYPE" "TFDP2 WILD-TYPE" "TFDP2 WILD-TYPE" "TFDP2 WILD-TYPE" 
     TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR      TCGA-FZ-5920 
"TFDP2 WILD-TYPE" "TFDP2 WILD-TYPE" "TFDP2 WILD-TYPE" "TFDP2 WILD-TYPE" 
     TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124      TCGA-H6-A45N 
"TFDP2 WILD-TYPE" "TFDP2 WILD-TYPE" "TFDP2 WILD-TYPE" "TFDP2 WILD-TYPE" 
     TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918      TCGA-HZ-7922 
"TFDP2 WILD-TYPE" "TFDP2 WILD-TYPE" "TFDP2 WILD-TYPE" "TFDP2 WILD-TYPE" 
     TCGA-HZ-7923      TCGA-HZ-7924      TCGA-HZ-7925      TCGA-HZ-7926 
"TFDP2 WILD-TYPE" "TFDP2 WILD-TYPE" "TFDP2 WILD-TYPE" "TFDP2 WILD-TYPE" 
     TCGA-HZ-8001      TCGA-HZ-8002      TCGA-HZ-8003      TCGA-HZ-8005 
"TFDP2 WILD-TYPE" "TFDP2 WILD-TYPE" "TFDP2 WILD-TYPE" "TFDP2 WILD-TYPE" 
     TCGA-HZ-8315      TCGA-HZ-8317      TCGA-HZ-8636      TCGA-HZ-8638 
"TFDP2 WILD-TYPE" "TFDP2 WILD-TYPE" "TFDP2 WILD-TYPE" "TFDP2 WILD-TYPE" 
     TCGA-HZ-A49G      TCGA-HZ-A49H      TCGA-HZ-A4BH      TCGA-HZ-A4BK 
"TFDP2 WILD-TYPE" "TFDP2 WILD-TYPE" "TFDP2 WILD-TYPE" "TFDP2 WILD-TYPE" 
     TCGA-IB-7644      TCGA-IB-7645      TCGA-IB-7646      TCGA-IB-7647 
"TFDP2 WILD-TYPE" "TFDP2 WILD-TYPE" "TFDP2 WILD-TYPE" "TFDP2 WILD-TYPE" 
     TCGA-IB-7649      TCGA-IB-7651      TCGA-IB-7652      TCGA-IB-7885 
"TFDP2 WILD-TYPE" "TFDP2 WILD-TYPE" "TFDP2 WILD-TYPE" "TFDP2 WILD-TYPE" 
     TCGA-IB-7886      TCGA-IB-7887      TCGA-IB-7888      TCGA-IB-7889 
"TFDP2 WILD-TYPE" "TFDP2 WILD-TYPE" "TFDP2 WILD-TYPE" "TFDP2 WILD-TYPE" 
     TCGA-IB-7890      TCGA-IB-7891      TCGA-IB-7893      TCGA-IB-7897 
"TFDP2 WILD-TYPE" "TFDP2 WILD-TYPE" "TFDP2 WILD-TYPE" "TFDP2 WILD-TYPE" 
     TCGA-IB-8126      TCGA-IB-8127      TCGA-IB-A5SO      TCGA-IB-A5SP 
"TFDP2 WILD-TYPE" "TFDP2 WILD-TYPE" "TFDP2 WILD-TYPE" "TFDP2 WILD-TYPE" 
     TCGA-IB-A5SQ      TCGA-IB-A5SS      TCGA-IB-A5ST      TCGA-IB-A6UG 
"TFDP2 WILD-TYPE" "TFDP2 WILD-TYPE" "TFDP2 WILD-TYPE" "TFDP2 WILD-TYPE" 
     TCGA-LB-A7SX      TCGA-OE-A75W      TCGA-PZ-A5RE      TCGA-Q3-A5QY 
"TFDP2 WILD-TYPE" "TFDP2 WILD-TYPE" "TFDP2 WILD-TYPE" "TFDP2 WILD-TYPE" 
     TCGA-US-A779      TCGA-US-A77E      TCGA-US-A77J 
"TFDP2 WILD-TYPE" "TFDP2 WILD-TYPE" "TFDP2 WILD-TYPE" 
D233V2, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  TFDP2 MUTATED          0        1         0         2         0        0
  TFDP2 WILD-TYPE        1        3        11        49         2        3
D233V3, multiclass
                 vv
clus              T1+T2 T3+T4
  TFDP2 MUTATED       1     2
  TFDP2 WILD-TYPE     5    64
D233V4, multiclass
       clus
vv      TFDP2 MUTATED TFDP2 WILD-TYPE
  T1+T2             1               5
  T3+T4             2              64
D233V5, binary
                 cls
clus               0  1
  TFDP2 MUTATED    1  2
  TFDP2 WILD-TYPE 16 52
[1] "tbl2"
                 cls
clus              [,1] [,2]
  TFDP2 MUTATED      1    2
  TFDP2 WILD-TYPE   16   52
   clus
vv  TFDP2 MUTATED TFDP2 WILD-TYPE
  0             1              16
  1             2              52
                 vv
clus              M0 M1 MX
  TFDP2 MUTATED    2  0  1
  TFDP2 WILD-TYPE 37  3 29
D233V6, multiclass
    clus
vv   TFDP2 MUTATED TFDP2 WILD-TYPE
  M0             2              37
  M1             0               3
  MX             1              29
D233V7, binary
                 cls
clus               0  1
  TFDP2 MUTATED    1  2
  TFDP2 WILD-TYPE 35 34
[1] "tbl2"
                 cls
clus              [,1] [,2]
  TFDP2 MUTATED      1    2
  TFDP2 WILD-TYPE   35   34
        clus
vv       TFDP2 MUTATED TFDP2 WILD-TYPE
  FEMALE             1              35
  MALE               2              34
                 vv
clus              PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  TFDP2 MUTATED                                     3
  TFDP2 WILD-TYPE                                  62
                 vv
clus              PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  TFDP2 MUTATED                                       0
  TFDP2 WILD-TYPE                                     4
                 vv
clus              PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  TFDP2 MUTATED                                                  0
  TFDP2 WILD-TYPE                                                2
D233V8, multiclass
                                                  clus
vv                                                 TFDP2 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                          3
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                        0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA             0
                                                  clus
vv                                                 TFDP2 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                           62
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                          4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA               2
D233V9, continuous
[1] "Remove cluster labels:" "TFDP2 MUTATED"         
clus
  TFDP2 MUTATED TFDP2 WILD-TYPE 
              1              21 
     TCGA-FB-A4P5      TCGA-FB-A4P6      TCGA-FB-A5VM      TCGA-FB-A78T 
"TFDP2 WILD-TYPE" "TFDP2 WILD-TYPE" "TFDP2 WILD-TYPE" "TFDP2 WILD-TYPE" 
     TCGA-FB-A7DR      TCGA-H6-8124      TCGA-H6-A45N      TCGA-H8-A6C1 
"TFDP2 WILD-TYPE" "TFDP2 WILD-TYPE" "TFDP2 WILD-TYPE" "TFDP2 WILD-TYPE" 
     TCGA-IB-7644      TCGA-IB-7649      TCGA-IB-7651      TCGA-IB-7885 
"TFDP2 WILD-TYPE" "TFDP2 WILD-TYPE" "TFDP2 WILD-TYPE" "TFDP2 WILD-TYPE" 
     TCGA-IB-7886      TCGA-IB-7887      TCGA-IB-7891      TCGA-IB-8126 
"TFDP2 WILD-TYPE" "TFDP2 WILD-TYPE" "TFDP2 WILD-TYPE" "TFDP2 WILD-TYPE" 
     TCGA-IB-8127      TCGA-IB-A5SS      TCGA-IB-A6UG      TCGA-LB-A7SX 
"TFDP2 WILD-TYPE" "TFDP2 WILD-TYPE" "TFDP2 WILD-TYPE" "TFDP2 WILD-TYPE" 
     TCGA-OE-A75W 
"TFDP2 WILD-TYPE" 
D233V10, continuous
                 vv
clus              R0 R1 RX
  TFDP2 MUTATED    2  1  0
  TFDP2 WILD-TYPE 40 23  2
D233V11, multiclass
    clus
vv   TFDP2 MUTATED TFDP2 WILD-TYPE
  R0             2              40
  R1             1              23
  RX             0               2
D233V12, continuous

Clustering(234) Variable = CACNA1D MUTATION ANALYSIS
D234V1, survival
                   sevent
clus2                0  1
  CACNA1D MUTATED    3  5
  CACNA1D WILD-TYPE 37 24
  CACNA1D MUTATED CACNA1D WILD-TYPE 
                8                61 
  CACNA1D MUTATED CACNA1D WILD-TYPE 
                5                24 
$`CACNA1D MUTATED`
TCGA-H6-8124 TCGA-HZ-7926 TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7651 
       12.89         0.26        11.41        49.38         4.77        19.82 
TCGA-IB-7893 TCGA-IB-8127 
        3.85        17.16 

$`CACNA1D WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P5 TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR 
        0.13        11.93        12.66         2.47         0.03         5.46 
TCGA-FZ-5920 TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7289 
        2.01        36.20        20.81         7.66        13.02         7.89 
TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 
        0.92         0.66         0.13         0.26        12.13        11.87 
TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 
        0.62         0.79         0.69         3.95         0.92         0.53 
TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK 
        0.16         2.99         0.76         0.95         6.38         1.51 
TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 
       21.90        15.35        15.65        27.98         4.04         3.62 
TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-7897 TCGA-IB-8126 
       43.79        15.81        19.66        16.04        15.98         0.56 
TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG 
       10.82         9.86         7.20        15.12         0.26         1.35 
TCGA-LB-A7SX TCGA-OE-A75W TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E 
        4.18         3.62         8.12        13.68        16.80        14.14 
TCGA-US-A77J 
       18.67 

  CACNA1D MUTATED CACNA1D WILD-TYPE 
             0.26              0.03 
  CACNA1D MUTATED CACNA1D WILD-TYPE 
            49.38             43.79 
  CACNA1D MUTATED CACNA1D WILD-TYPE 
            12.15              7.20 
[1] "0.3 - 49.4 (12.2)" "0.0 - 43.8 (7.2)" 
       TCGA-F2-6879        TCGA-F2-6880        TCGA-F2-7273        TCGA-F2-7276 
"CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" 
       TCGA-F2-A44G        TCGA-F2-A44H        TCGA-FB-A4P5        TCGA-FB-A4P6 
"CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" 
       TCGA-FB-A545        TCGA-FB-A5VM        TCGA-FB-A78T        TCGA-FB-A7DR 
"CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" 
       TCGA-FZ-5920        TCGA-FZ-5922        TCGA-FZ-5923        TCGA-H6-8124 
"CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE"   "CACNA1D MUTATED" 
       TCGA-H6-A45N        TCGA-H8-A6C1        TCGA-HZ-7289        TCGA-HZ-7918 
"CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" 
       TCGA-HZ-7919        TCGA-HZ-7922        TCGA-HZ-7923        TCGA-HZ-7924 
"CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" 
       TCGA-HZ-7925        TCGA-HZ-7926        TCGA-HZ-8001        TCGA-HZ-8002 
"CACNA1D WILD-TYPE"   "CACNA1D MUTATED" "CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" 
       TCGA-HZ-8003        TCGA-HZ-8005        TCGA-HZ-8315        TCGA-HZ-8317 
"CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" 
       TCGA-HZ-8636        TCGA-HZ-8638        TCGA-HZ-A49G        TCGA-HZ-A49H 
"CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" 
       TCGA-HZ-A4BH        TCGA-HZ-A4BK        TCGA-IB-7644        TCGA-IB-7645 
"CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE"   "CACNA1D MUTATED"   "CACNA1D MUTATED" 
       TCGA-IB-7646        TCGA-IB-7647        TCGA-IB-7649        TCGA-IB-7651 
  "CACNA1D MUTATED" "CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE"   "CACNA1D MUTATED" 
       TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-7886        TCGA-IB-7887 
"CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" 
       TCGA-IB-7888        TCGA-IB-7889        TCGA-IB-7890        TCGA-IB-7891 
"CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" 
       TCGA-IB-7893        TCGA-IB-7897        TCGA-IB-8126        TCGA-IB-8127 
  "CACNA1D MUTATED" "CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE"   "CACNA1D MUTATED" 
       TCGA-IB-A5SO        TCGA-IB-A5SP        TCGA-IB-A5SQ        TCGA-IB-A5SS 
"CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" 
       TCGA-IB-A5ST        TCGA-IB-A6UG        TCGA-LB-A7SX        TCGA-OE-A75W 
"CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" 
       TCGA-PZ-A5RE        TCGA-Q3-A5QY        TCGA-US-A779        TCGA-US-A77E 
"CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" 
       TCGA-US-A77J 
"CACNA1D WILD-TYPE" 
       TCGA-F2-6879        TCGA-F2-6880        TCGA-F2-7273        TCGA-F2-7276 
"CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" 
       TCGA-F2-A44G        TCGA-F2-A44H        TCGA-FB-A4P5        TCGA-FB-A4P6 
"CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" 
       TCGA-FB-A545        TCGA-FB-A5VM        TCGA-FB-A78T        TCGA-FB-A7DR 
"CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" 
       TCGA-FZ-5920        TCGA-FZ-5922        TCGA-FZ-5923        TCGA-H6-8124 
"CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE"   "CACNA1D MUTATED" 
       TCGA-H6-A45N        TCGA-H8-A6C1        TCGA-HZ-7289        TCGA-HZ-7918 
"CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" 
       TCGA-HZ-7919        TCGA-HZ-7922        TCGA-HZ-7923        TCGA-HZ-7924 
"CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" 
       TCGA-HZ-7925        TCGA-HZ-7926        TCGA-HZ-8001        TCGA-HZ-8002 
"CACNA1D WILD-TYPE"   "CACNA1D MUTATED" "CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" 
       TCGA-HZ-8003        TCGA-HZ-8005        TCGA-HZ-8315        TCGA-HZ-8317 
"CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" 
       TCGA-HZ-8636        TCGA-HZ-8638        TCGA-HZ-A49G        TCGA-HZ-A49H 
"CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" 
       TCGA-HZ-A4BH        TCGA-HZ-A4BK        TCGA-IB-7644        TCGA-IB-7645 
"CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE"   "CACNA1D MUTATED"   "CACNA1D MUTATED" 
       TCGA-IB-7646        TCGA-IB-7647        TCGA-IB-7649        TCGA-IB-7651 
  "CACNA1D MUTATED" "CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE"   "CACNA1D MUTATED" 
       TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-7886        TCGA-IB-7887 
"CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" 
       TCGA-IB-7888        TCGA-IB-7889        TCGA-IB-7890        TCGA-IB-7891 
"CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" 
       TCGA-IB-7893        TCGA-IB-7897        TCGA-IB-8126        TCGA-IB-8127 
  "CACNA1D MUTATED" "CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE"   "CACNA1D MUTATED" 
       TCGA-IB-A5SO        TCGA-IB-A5SP        TCGA-IB-A5SQ        TCGA-IB-A5SS 
"CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" 
       TCGA-IB-A5ST        TCGA-IB-A6UG        TCGA-LB-A7SX        TCGA-OE-A75W 
"CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" 
       TCGA-PZ-A5RE        TCGA-Q3-A5QY        TCGA-US-A779        TCGA-US-A77E 
"CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" 
       TCGA-US-A77J 
"CACNA1D WILD-TYPE" 
       TCGA-F2-6879        TCGA-F2-6880        TCGA-F2-7273        TCGA-F2-7276 
"CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" 
       TCGA-F2-A44G        TCGA-F2-A44H        TCGA-FB-A4P5        TCGA-FB-A4P6 
"CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" 
       TCGA-FB-A545        TCGA-FB-A5VM        TCGA-FB-A78T        TCGA-FB-A7DR 
"CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" 
       TCGA-FZ-5920        TCGA-FZ-5922        TCGA-FZ-5923        TCGA-H6-8124 
"CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE"   "CACNA1D MUTATED" 
       TCGA-H6-A45N        TCGA-H8-A6C1        TCGA-HZ-7289        TCGA-HZ-7918 
"CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" 
       TCGA-HZ-7919        TCGA-HZ-7922        TCGA-HZ-7923        TCGA-HZ-7924 
"CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" 
       TCGA-HZ-7925        TCGA-HZ-7926        TCGA-HZ-8001        TCGA-HZ-8002 
"CACNA1D WILD-TYPE"   "CACNA1D MUTATED" "CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" 
       TCGA-HZ-8003        TCGA-HZ-8005        TCGA-HZ-8315        TCGA-HZ-8317 
"CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" 
       TCGA-HZ-8636        TCGA-HZ-8638        TCGA-HZ-A49G        TCGA-HZ-A49H 
"CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" 
       TCGA-HZ-A4BH        TCGA-HZ-A4BK        TCGA-IB-7644        TCGA-IB-7645 
"CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE"   "CACNA1D MUTATED"   "CACNA1D MUTATED" 
       TCGA-IB-7646        TCGA-IB-7647        TCGA-IB-7649        TCGA-IB-7651 
  "CACNA1D MUTATED" "CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE"   "CACNA1D MUTATED" 
       TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-7886        TCGA-IB-7887 
"CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" 
       TCGA-IB-7888        TCGA-IB-7889        TCGA-IB-7890        TCGA-IB-7891 
"CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" 
       TCGA-IB-7893        TCGA-IB-7897        TCGA-IB-8126        TCGA-IB-8127 
  "CACNA1D MUTATED" "CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE"   "CACNA1D MUTATED" 
       TCGA-IB-A5SO        TCGA-IB-A5SP        TCGA-IB-A5SQ        TCGA-IB-A5SS 
"CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" 
       TCGA-IB-A5ST        TCGA-IB-A6UG        TCGA-LB-A7SX        TCGA-OE-A75W 
"CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" 
       TCGA-PZ-A5RE        TCGA-Q3-A5QY        TCGA-US-A779        TCGA-US-A77E 
"CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" 
       TCGA-US-A77J 
"CACNA1D WILD-TYPE" 
[1] "hr=" "1.4"
D234V2, continuous
                   vv
clus                STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  CACNA1D MUTATED          0        1         1         6         0        1
  CACNA1D WILD-TYPE        1        3        10        45         2        2
D234V3, multiclass
                   vv
clus                T1+T2 T3+T4
  CACNA1D MUTATED       1     8
  CACNA1D WILD-TYPE     5    58
D234V4, multiclass
       clus
vv      CACNA1D MUTATED CACNA1D WILD-TYPE
  T1+T2               1                 5
  T3+T4               8                58
D234V5, binary
                   cls
clus                 0  1
  CACNA1D MUTATED    2  7
  CACNA1D WILD-TYPE 15 47
[1] "tbl2"
                   cls
clus                [,1] [,2]
  CACNA1D MUTATED      2    7
  CACNA1D WILD-TYPE   15   47
   clus
vv  CACNA1D MUTATED CACNA1D WILD-TYPE
  0               2                15
  1               7                47
                   vv
clus                M0 M1 MX
  CACNA1D MUTATED    6  1  2
  CACNA1D WILD-TYPE 33  2 28
D234V6, multiclass
    clus
vv   CACNA1D MUTATED CACNA1D WILD-TYPE
  M0               6                33
  M1               1                 2
  MX               2                28
D234V7, binary
                   cls
clus                 0  1
  CACNA1D MUTATED    4  5
  CACNA1D WILD-TYPE 32 31
[1] "tbl2"
                   cls
clus                [,1] [,2]
  CACNA1D MUTATED      4    5
  CACNA1D WILD-TYPE   32   31
        clus
vv       CACNA1D MUTATED CACNA1D WILD-TYPE
  FEMALE               4                32
  MALE                 5                31
                   vv
clus                PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  CACNA1D MUTATED                                     9
  CACNA1D WILD-TYPE                                  56
                   vv
clus                PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  CACNA1D MUTATED                                       0
  CACNA1D WILD-TYPE                                     4
                   vv
clus                PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  CACNA1D MUTATED                                                  0
  CACNA1D WILD-TYPE                                                2
D234V8, multiclass
                                                  clus
vv                                                 CACNA1D MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                            9
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                          0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA               0
                                                  clus
vv                                                 CACNA1D WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                             56
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                            4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                 2
D234V9, continuous
D234V10, continuous
                   vv
clus                R0 R1 RX
  CACNA1D MUTATED    5  3  1
  CACNA1D WILD-TYPE 37 21  1
D234V11, multiclass
    clus
vv   CACNA1D MUTATED CACNA1D WILD-TYPE
  R0               5                37
  R1               3                21
  RX               1                 1
D234V12, continuous

Clustering(235) Variable = SEC31A MUTATION ANALYSIS
D235V1, survival
                  sevent
clus2               0  1
  SEC31A MUTATED    8  2
  SEC31A WILD-TYPE 32 27
  SEC31A MUTATED SEC31A WILD-TYPE 
              10               59 
  SEC31A MUTATED SEC31A WILD-TYPE 
               2               27 
$`SEC31A MUTATED`
TCGA-F2-A44H TCGA-H6-8124 TCGA-HZ-7289 TCGA-HZ-7919 TCGA-HZ-8001 TCGA-HZ-8003 
       19.27        12.89         7.89         0.66         0.62         0.69 
TCGA-HZ-8317 TCGA-IB-7651 TCGA-IB-7885 TCGA-IB-7897 
        0.53        19.82        27.98        15.98 

$`SEC31A WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-FB-A4P5 
       10.98         9.70        11.84         7.10         5.03         0.13 
TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR TCGA-FZ-5920 
       11.93        12.66         2.47         0.03         5.46         2.01 
TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7918 TCGA-HZ-7922 
       36.20        20.81         7.66        13.02         0.92         0.13 
TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8002 TCGA-HZ-8005 
        0.26        12.13        11.87         0.26         0.79         3.95 
TCGA-HZ-8315 TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH 
        0.92         0.16         2.99         0.76         0.95         6.38 
TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 
        1.51        11.41        49.38         4.77        21.90        15.35 
TCGA-IB-7652 TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 
       15.65         4.04         3.62        43.79        15.81        19.66 
TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP 
       16.04         3.85         0.56        17.16        10.82         9.86 
TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W 
        7.20        15.12         0.26         1.35         4.18         3.62 
TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
        8.12        13.68        16.80        14.14        18.67 

  SEC31A MUTATED SEC31A WILD-TYPE 
            0.53             0.03 
  SEC31A MUTATED SEC31A WILD-TYPE 
           27.98            49.38 
  SEC31A MUTATED SEC31A WILD-TYPE 
           10.39             7.20 
[1] "0.5 - 28.0 (10.4)" "0.0 - 49.4 (7.2)" 
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
"SEC31A WILD-TYPE" "SEC31A WILD-TYPE" "SEC31A WILD-TYPE" "SEC31A WILD-TYPE" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"SEC31A WILD-TYPE"   "SEC31A MUTATED" "SEC31A WILD-TYPE" "SEC31A WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
"SEC31A WILD-TYPE" "SEC31A WILD-TYPE" "SEC31A WILD-TYPE" "SEC31A WILD-TYPE" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"SEC31A WILD-TYPE" "SEC31A WILD-TYPE" "SEC31A WILD-TYPE"   "SEC31A MUTATED" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
"SEC31A WILD-TYPE" "SEC31A WILD-TYPE"   "SEC31A MUTATED" "SEC31A WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
  "SEC31A MUTATED" "SEC31A WILD-TYPE" "SEC31A WILD-TYPE" "SEC31A WILD-TYPE" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"SEC31A WILD-TYPE" "SEC31A WILD-TYPE"   "SEC31A MUTATED" "SEC31A WILD-TYPE" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
  "SEC31A MUTATED" "SEC31A WILD-TYPE" "SEC31A WILD-TYPE"   "SEC31A MUTATED" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
"SEC31A WILD-TYPE" "SEC31A WILD-TYPE" "SEC31A WILD-TYPE" "SEC31A WILD-TYPE" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
"SEC31A WILD-TYPE" "SEC31A WILD-TYPE" "SEC31A WILD-TYPE" "SEC31A WILD-TYPE" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
"SEC31A WILD-TYPE" "SEC31A WILD-TYPE" "SEC31A WILD-TYPE"   "SEC31A MUTATED" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
"SEC31A WILD-TYPE"   "SEC31A MUTATED" "SEC31A WILD-TYPE" "SEC31A WILD-TYPE" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
"SEC31A WILD-TYPE" "SEC31A WILD-TYPE" "SEC31A WILD-TYPE" "SEC31A WILD-TYPE" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
"SEC31A WILD-TYPE"   "SEC31A MUTATED" "SEC31A WILD-TYPE" "SEC31A WILD-TYPE" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"SEC31A WILD-TYPE" "SEC31A WILD-TYPE" "SEC31A WILD-TYPE" "SEC31A WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"SEC31A WILD-TYPE" "SEC31A WILD-TYPE" "SEC31A WILD-TYPE" "SEC31A WILD-TYPE" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
"SEC31A WILD-TYPE" "SEC31A WILD-TYPE" "SEC31A WILD-TYPE" "SEC31A WILD-TYPE" 
      TCGA-US-A77J 
"SEC31A WILD-TYPE" 
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
"SEC31A WILD-TYPE" "SEC31A WILD-TYPE" "SEC31A WILD-TYPE" "SEC31A WILD-TYPE" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"SEC31A WILD-TYPE"   "SEC31A MUTATED" "SEC31A WILD-TYPE" "SEC31A WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
"SEC31A WILD-TYPE" "SEC31A WILD-TYPE" "SEC31A WILD-TYPE" "SEC31A WILD-TYPE" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"SEC31A WILD-TYPE" "SEC31A WILD-TYPE" "SEC31A WILD-TYPE"   "SEC31A MUTATED" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
"SEC31A WILD-TYPE" "SEC31A WILD-TYPE"   "SEC31A MUTATED" "SEC31A WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
  "SEC31A MUTATED" "SEC31A WILD-TYPE" "SEC31A WILD-TYPE" "SEC31A WILD-TYPE" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"SEC31A WILD-TYPE" "SEC31A WILD-TYPE"   "SEC31A MUTATED" "SEC31A WILD-TYPE" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
  "SEC31A MUTATED" "SEC31A WILD-TYPE" "SEC31A WILD-TYPE"   "SEC31A MUTATED" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
"SEC31A WILD-TYPE" "SEC31A WILD-TYPE" "SEC31A WILD-TYPE" "SEC31A WILD-TYPE" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
"SEC31A WILD-TYPE" "SEC31A WILD-TYPE" "SEC31A WILD-TYPE" "SEC31A WILD-TYPE" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
"SEC31A WILD-TYPE" "SEC31A WILD-TYPE" "SEC31A WILD-TYPE"   "SEC31A MUTATED" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
"SEC31A WILD-TYPE"   "SEC31A MUTATED" "SEC31A WILD-TYPE" "SEC31A WILD-TYPE" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
"SEC31A WILD-TYPE" "SEC31A WILD-TYPE" "SEC31A WILD-TYPE" "SEC31A WILD-TYPE" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
"SEC31A WILD-TYPE"   "SEC31A MUTATED" "SEC31A WILD-TYPE" "SEC31A WILD-TYPE" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"SEC31A WILD-TYPE" "SEC31A WILD-TYPE" "SEC31A WILD-TYPE" "SEC31A WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"SEC31A WILD-TYPE" "SEC31A WILD-TYPE" "SEC31A WILD-TYPE" "SEC31A WILD-TYPE" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
"SEC31A WILD-TYPE" "SEC31A WILD-TYPE" "SEC31A WILD-TYPE" "SEC31A WILD-TYPE" 
      TCGA-US-A77J 
"SEC31A WILD-TYPE" 
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
"SEC31A WILD-TYPE" "SEC31A WILD-TYPE" "SEC31A WILD-TYPE" "SEC31A WILD-TYPE" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"SEC31A WILD-TYPE"   "SEC31A MUTATED" "SEC31A WILD-TYPE" "SEC31A WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
"SEC31A WILD-TYPE" "SEC31A WILD-TYPE" "SEC31A WILD-TYPE" "SEC31A WILD-TYPE" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"SEC31A WILD-TYPE" "SEC31A WILD-TYPE" "SEC31A WILD-TYPE"   "SEC31A MUTATED" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
"SEC31A WILD-TYPE" "SEC31A WILD-TYPE"   "SEC31A MUTATED" "SEC31A WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
  "SEC31A MUTATED" "SEC31A WILD-TYPE" "SEC31A WILD-TYPE" "SEC31A WILD-TYPE" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"SEC31A WILD-TYPE" "SEC31A WILD-TYPE"   "SEC31A MUTATED" "SEC31A WILD-TYPE" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
  "SEC31A MUTATED" "SEC31A WILD-TYPE" "SEC31A WILD-TYPE"   "SEC31A MUTATED" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
"SEC31A WILD-TYPE" "SEC31A WILD-TYPE" "SEC31A WILD-TYPE" "SEC31A WILD-TYPE" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
"SEC31A WILD-TYPE" "SEC31A WILD-TYPE" "SEC31A WILD-TYPE" "SEC31A WILD-TYPE" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
"SEC31A WILD-TYPE" "SEC31A WILD-TYPE" "SEC31A WILD-TYPE"   "SEC31A MUTATED" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
"SEC31A WILD-TYPE"   "SEC31A MUTATED" "SEC31A WILD-TYPE" "SEC31A WILD-TYPE" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
"SEC31A WILD-TYPE" "SEC31A WILD-TYPE" "SEC31A WILD-TYPE" "SEC31A WILD-TYPE" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
"SEC31A WILD-TYPE"   "SEC31A MUTATED" "SEC31A WILD-TYPE" "SEC31A WILD-TYPE" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"SEC31A WILD-TYPE" "SEC31A WILD-TYPE" "SEC31A WILD-TYPE" "SEC31A WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"SEC31A WILD-TYPE" "SEC31A WILD-TYPE" "SEC31A WILD-TYPE" "SEC31A WILD-TYPE" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
"SEC31A WILD-TYPE" "SEC31A WILD-TYPE" "SEC31A WILD-TYPE" "SEC31A WILD-TYPE" 
      TCGA-US-A77J 
"SEC31A WILD-TYPE" 
[1] "hr=" "2.8"
D235V2, continuous
                  vv
clus               STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  SEC31A MUTATED          0        0         1         8         1        0
  SEC31A WILD-TYPE        1        4        10        43         1        3
D235V3, multiclass
                  vv
clus               T1+T2 T3+T4
  SEC31A MUTATED       0    10
  SEC31A WILD-TYPE     6    56
D235V4, multiclass
       clus
vv      SEC31A MUTATED SEC31A WILD-TYPE
  T1+T2              0                6
  T3+T4             10               56
D235V5, binary
                  cls
clus                0  1
  SEC31A MUTATED    2  8
  SEC31A WILD-TYPE 15 46
[1] "tbl2"
                  cls
clus               [,1] [,2]
  SEC31A MUTATED      2    8
  SEC31A WILD-TYPE   15   46
   clus
vv  SEC31A MUTATED SEC31A WILD-TYPE
  0              2               15
  1              8               46
                  vv
clus               M0 M1 MX
  SEC31A MUTATED    6  0  4
  SEC31A WILD-TYPE 33  3 26
D235V6, multiclass
    clus
vv   SEC31A MUTATED SEC31A WILD-TYPE
  M0              6               33
  M1              0                3
  MX              4               26
D235V7, binary
                  cls
clus                0  1
  SEC31A MUTATED    7  3
  SEC31A WILD-TYPE 29 33
[1] "tbl2"
                  cls
clus               [,1] [,2]
  SEC31A MUTATED      7    3
  SEC31A WILD-TYPE   29   33
        clus
vv       SEC31A MUTATED SEC31A WILD-TYPE
  FEMALE              7               29
  MALE                3               33
                  vv
clus               PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  SEC31A MUTATED                                     9
  SEC31A WILD-TYPE                                  56
                  vv
clus               PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  SEC31A MUTATED                                       1
  SEC31A WILD-TYPE                                     3
                  vv
clus               PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  SEC31A MUTATED                                                  0
  SEC31A WILD-TYPE                                                2
D235V8, multiclass
                                                  clus
vv                                                 SEC31A MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                           9
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                         1
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA              0
                                                  clus
vv                                                 SEC31A WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                            56
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                           3
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                2
D235V9, continuous
D235V10, continuous
                  vv
clus               R0 R1 RX
  SEC31A MUTATED    7  2  1
  SEC31A WILD-TYPE 35 22  1
D235V11, multiclass
    clus
vv   SEC31A MUTATED SEC31A WILD-TYPE
  R0              7               35
  R1              2               22
  RX              1                1
D235V12, continuous

Clustering(236) Variable = RETN MUTATION ANALYSIS
D236V1, survival
                sevent
clus2             0  1
  RETN MUTATED    2  1
  RETN WILD-TYPE 38 28
  RETN MUTATED RETN WILD-TYPE 
             3             66 
  RETN MUTATED RETN WILD-TYPE 
             1             28 
$`RETN MUTATED`
TCGA-HZ-7924 TCGA-HZ-8005 TCGA-IB-8127 
       12.13         3.95        17.16 

$`RETN WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P5 TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR 
        0.13        11.93        12.66         2.47         0.03         5.46 
TCGA-FZ-5920 TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 
        2.01        36.20        20.81        12.89         7.66        13.02 
TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7925 
        7.89         0.92         0.66         0.13         0.26        11.87 
TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8315 TCGA-HZ-8317 
        0.26         0.62         0.79         0.69         0.92         0.53 
TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK 
        0.16         2.99         0.76         0.95         6.38         1.51 
TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7651 
       11.41        49.38         4.77        21.90        15.35        19.82 
TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 
       15.65        27.98         4.04         3.62        43.79        15.81 
TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-A5SO 
       19.66        16.04         3.85        15.98         0.56        10.82 
TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX 
        9.86         7.20        15.12         0.26         1.35         4.18 
TCGA-OE-A75W TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
        3.62         8.12        13.68        16.80        14.14        18.67 

  RETN MUTATED RETN WILD-TYPE 
          3.95           0.03 
  RETN MUTATED RETN WILD-TYPE 
         17.16          49.38 
  RETN MUTATED RETN WILD-TYPE 
         12.13           7.43 
[1] "4.0 - 17.2 (12.1)" "0.0 - 49.4 (7.4)" 
    TCGA-F2-6879     TCGA-F2-6880     TCGA-F2-7273     TCGA-F2-7276 
"RETN WILD-TYPE" "RETN WILD-TYPE" "RETN WILD-TYPE" "RETN WILD-TYPE" 
    TCGA-F2-A44G     TCGA-F2-A44H     TCGA-FB-A4P5     TCGA-FB-A4P6 
"RETN WILD-TYPE" "RETN WILD-TYPE" "RETN WILD-TYPE" "RETN WILD-TYPE" 
    TCGA-FB-A545     TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-FB-A7DR 
"RETN WILD-TYPE" "RETN WILD-TYPE" "RETN WILD-TYPE" "RETN WILD-TYPE" 
    TCGA-FZ-5920     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-H6-8124 
"RETN WILD-TYPE" "RETN WILD-TYPE" "RETN WILD-TYPE" "RETN WILD-TYPE" 
    TCGA-H6-A45N     TCGA-H8-A6C1     TCGA-HZ-7289     TCGA-HZ-7918 
"RETN WILD-TYPE" "RETN WILD-TYPE" "RETN WILD-TYPE" "RETN WILD-TYPE" 
    TCGA-HZ-7919     TCGA-HZ-7922     TCGA-HZ-7923     TCGA-HZ-7924 
"RETN WILD-TYPE" "RETN WILD-TYPE" "RETN WILD-TYPE"   "RETN MUTATED" 
    TCGA-HZ-7925     TCGA-HZ-7926     TCGA-HZ-8001     TCGA-HZ-8002 
"RETN WILD-TYPE" "RETN WILD-TYPE" "RETN WILD-TYPE" "RETN WILD-TYPE" 
    TCGA-HZ-8003     TCGA-HZ-8005     TCGA-HZ-8315     TCGA-HZ-8317 
"RETN WILD-TYPE"   "RETN MUTATED" "RETN WILD-TYPE" "RETN WILD-TYPE" 
    TCGA-HZ-8636     TCGA-HZ-8638     TCGA-HZ-A49G     TCGA-HZ-A49H 
"RETN WILD-TYPE" "RETN WILD-TYPE" "RETN WILD-TYPE" "RETN WILD-TYPE" 
    TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-IB-7644     TCGA-IB-7645 
"RETN WILD-TYPE" "RETN WILD-TYPE" "RETN WILD-TYPE" "RETN WILD-TYPE" 
    TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7651 
"RETN WILD-TYPE" "RETN WILD-TYPE" "RETN WILD-TYPE" "RETN WILD-TYPE" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887 
"RETN WILD-TYPE" "RETN WILD-TYPE" "RETN WILD-TYPE" "RETN WILD-TYPE" 
    TCGA-IB-7888     TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891 
"RETN WILD-TYPE" "RETN WILD-TYPE" "RETN WILD-TYPE" "RETN WILD-TYPE" 
    TCGA-IB-7893     TCGA-IB-7897     TCGA-IB-8126     TCGA-IB-8127 
"RETN WILD-TYPE" "RETN WILD-TYPE" "RETN WILD-TYPE"   "RETN MUTATED" 
    TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS 
"RETN WILD-TYPE" "RETN WILD-TYPE" "RETN WILD-TYPE" "RETN WILD-TYPE" 
    TCGA-IB-A5ST     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
"RETN WILD-TYPE" "RETN WILD-TYPE" "RETN WILD-TYPE" "RETN WILD-TYPE" 
    TCGA-PZ-A5RE     TCGA-Q3-A5QY     TCGA-US-A779     TCGA-US-A77E 
"RETN WILD-TYPE" "RETN WILD-TYPE" "RETN WILD-TYPE" "RETN WILD-TYPE" 
    TCGA-US-A77J 
"RETN WILD-TYPE" 
    TCGA-F2-6879     TCGA-F2-6880     TCGA-F2-7273     TCGA-F2-7276 
"RETN WILD-TYPE" "RETN WILD-TYPE" "RETN WILD-TYPE" "RETN WILD-TYPE" 
    TCGA-F2-A44G     TCGA-F2-A44H     TCGA-FB-A4P5     TCGA-FB-A4P6 
"RETN WILD-TYPE" "RETN WILD-TYPE" "RETN WILD-TYPE" "RETN WILD-TYPE" 
    TCGA-FB-A545     TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-FB-A7DR 
"RETN WILD-TYPE" "RETN WILD-TYPE" "RETN WILD-TYPE" "RETN WILD-TYPE" 
    TCGA-FZ-5920     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-H6-8124 
"RETN WILD-TYPE" "RETN WILD-TYPE" "RETN WILD-TYPE" "RETN WILD-TYPE" 
    TCGA-H6-A45N     TCGA-H8-A6C1     TCGA-HZ-7289     TCGA-HZ-7918 
"RETN WILD-TYPE" "RETN WILD-TYPE" "RETN WILD-TYPE" "RETN WILD-TYPE" 
    TCGA-HZ-7919     TCGA-HZ-7922     TCGA-HZ-7923     TCGA-HZ-7924 
"RETN WILD-TYPE" "RETN WILD-TYPE" "RETN WILD-TYPE"   "RETN MUTATED" 
    TCGA-HZ-7925     TCGA-HZ-7926     TCGA-HZ-8001     TCGA-HZ-8002 
"RETN WILD-TYPE" "RETN WILD-TYPE" "RETN WILD-TYPE" "RETN WILD-TYPE" 
    TCGA-HZ-8003     TCGA-HZ-8005     TCGA-HZ-8315     TCGA-HZ-8317 
"RETN WILD-TYPE"   "RETN MUTATED" "RETN WILD-TYPE" "RETN WILD-TYPE" 
    TCGA-HZ-8636     TCGA-HZ-8638     TCGA-HZ-A49G     TCGA-HZ-A49H 
"RETN WILD-TYPE" "RETN WILD-TYPE" "RETN WILD-TYPE" "RETN WILD-TYPE" 
    TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-IB-7644     TCGA-IB-7645 
"RETN WILD-TYPE" "RETN WILD-TYPE" "RETN WILD-TYPE" "RETN WILD-TYPE" 
    TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7651 
"RETN WILD-TYPE" "RETN WILD-TYPE" "RETN WILD-TYPE" "RETN WILD-TYPE" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887 
"RETN WILD-TYPE" "RETN WILD-TYPE" "RETN WILD-TYPE" "RETN WILD-TYPE" 
    TCGA-IB-7888     TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891 
"RETN WILD-TYPE" "RETN WILD-TYPE" "RETN WILD-TYPE" "RETN WILD-TYPE" 
    TCGA-IB-7893     TCGA-IB-7897     TCGA-IB-8126     TCGA-IB-8127 
"RETN WILD-TYPE" "RETN WILD-TYPE" "RETN WILD-TYPE"   "RETN MUTATED" 
    TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS 
"RETN WILD-TYPE" "RETN WILD-TYPE" "RETN WILD-TYPE" "RETN WILD-TYPE" 
    TCGA-IB-A5ST     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
"RETN WILD-TYPE" "RETN WILD-TYPE" "RETN WILD-TYPE" "RETN WILD-TYPE" 
    TCGA-PZ-A5RE     TCGA-Q3-A5QY     TCGA-US-A779     TCGA-US-A77E 
"RETN WILD-TYPE" "RETN WILD-TYPE" "RETN WILD-TYPE" "RETN WILD-TYPE" 
    TCGA-US-A77J 
"RETN WILD-TYPE" 
    TCGA-F2-6879     TCGA-F2-6880     TCGA-F2-7273     TCGA-F2-7276 
"RETN WILD-TYPE" "RETN WILD-TYPE" "RETN WILD-TYPE" "RETN WILD-TYPE" 
    TCGA-F2-A44G     TCGA-F2-A44H     TCGA-FB-A4P5     TCGA-FB-A4P6 
"RETN WILD-TYPE" "RETN WILD-TYPE" "RETN WILD-TYPE" "RETN WILD-TYPE" 
    TCGA-FB-A545     TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-FB-A7DR 
"RETN WILD-TYPE" "RETN WILD-TYPE" "RETN WILD-TYPE" "RETN WILD-TYPE" 
    TCGA-FZ-5920     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-H6-8124 
"RETN WILD-TYPE" "RETN WILD-TYPE" "RETN WILD-TYPE" "RETN WILD-TYPE" 
    TCGA-H6-A45N     TCGA-H8-A6C1     TCGA-HZ-7289     TCGA-HZ-7918 
"RETN WILD-TYPE" "RETN WILD-TYPE" "RETN WILD-TYPE" "RETN WILD-TYPE" 
    TCGA-HZ-7919     TCGA-HZ-7922     TCGA-HZ-7923     TCGA-HZ-7924 
"RETN WILD-TYPE" "RETN WILD-TYPE" "RETN WILD-TYPE"   "RETN MUTATED" 
    TCGA-HZ-7925     TCGA-HZ-7926     TCGA-HZ-8001     TCGA-HZ-8002 
"RETN WILD-TYPE" "RETN WILD-TYPE" "RETN WILD-TYPE" "RETN WILD-TYPE" 
    TCGA-HZ-8003     TCGA-HZ-8005     TCGA-HZ-8315     TCGA-HZ-8317 
"RETN WILD-TYPE"   "RETN MUTATED" "RETN WILD-TYPE" "RETN WILD-TYPE" 
    TCGA-HZ-8636     TCGA-HZ-8638     TCGA-HZ-A49G     TCGA-HZ-A49H 
"RETN WILD-TYPE" "RETN WILD-TYPE" "RETN WILD-TYPE" "RETN WILD-TYPE" 
    TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-IB-7644     TCGA-IB-7645 
"RETN WILD-TYPE" "RETN WILD-TYPE" "RETN WILD-TYPE" "RETN WILD-TYPE" 
    TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7651 
"RETN WILD-TYPE" "RETN WILD-TYPE" "RETN WILD-TYPE" "RETN WILD-TYPE" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887 
"RETN WILD-TYPE" "RETN WILD-TYPE" "RETN WILD-TYPE" "RETN WILD-TYPE" 
    TCGA-IB-7888     TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891 
"RETN WILD-TYPE" "RETN WILD-TYPE" "RETN WILD-TYPE" "RETN WILD-TYPE" 
    TCGA-IB-7893     TCGA-IB-7897     TCGA-IB-8126     TCGA-IB-8127 
"RETN WILD-TYPE" "RETN WILD-TYPE" "RETN WILD-TYPE"   "RETN MUTATED" 
    TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS 
"RETN WILD-TYPE" "RETN WILD-TYPE" "RETN WILD-TYPE" "RETN WILD-TYPE" 
    TCGA-IB-A5ST     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
"RETN WILD-TYPE" "RETN WILD-TYPE" "RETN WILD-TYPE" "RETN WILD-TYPE" 
    TCGA-PZ-A5RE     TCGA-Q3-A5QY     TCGA-US-A779     TCGA-US-A77E 
"RETN WILD-TYPE" "RETN WILD-TYPE" "RETN WILD-TYPE" "RETN WILD-TYPE" 
    TCGA-US-A77J 
"RETN WILD-TYPE" 
[1] "hr=" "1.3"
D236V2, continuous
                vv
clus             STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  RETN MUTATED          0        0         1         2         0        0
  RETN WILD-TYPE        1        4        10        49         2        3
D236V3, multiclass
                vv
clus             T1+T2 T3+T4
  RETN MUTATED       0     3
  RETN WILD-TYPE     6    63
D236V4, multiclass
       clus
vv      RETN MUTATED RETN WILD-TYPE
  T1+T2            0              6
  T3+T4            3             63
D236V5, binary
                cls
clus              0  1
  RETN MUTATED    1  2
  RETN WILD-TYPE 16 52
[1] "tbl2"
                cls
clus             [,1] [,2]
  RETN MUTATED      1    2
  RETN WILD-TYPE   16   52
   clus
vv  RETN MUTATED RETN WILD-TYPE
  0            1             16
  1            2             52
                vv
clus             M0 M1 MX
  RETN MUTATED    1  0  2
  RETN WILD-TYPE 38  3 28
D236V6, multiclass
    clus
vv   RETN MUTATED RETN WILD-TYPE
  M0            1             38
  M1            0              3
  MX            2             28
D236V7, binary
                cls
clus              0  1
  RETN MUTATED    1  2
  RETN WILD-TYPE 35 34
[1] "tbl2"
                cls
clus             [,1] [,2]
  RETN MUTATED      1    2
  RETN WILD-TYPE   35   34
        clus
vv       RETN MUTATED RETN WILD-TYPE
  FEMALE            1             35
  MALE              2             34
                vv
clus             PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  RETN MUTATED                                     3
  RETN WILD-TYPE                                  62
                vv
clus             PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  RETN MUTATED                                       0
  RETN WILD-TYPE                                     4
                vv
clus             PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  RETN MUTATED                                                  0
  RETN WILD-TYPE                                                2
D236V8, multiclass
                                                  clus
vv                                                 RETN MUTATED RETN WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                         3             62
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                       0              4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA            0              2
D236V9, continuous
[1] "Remove cluster labels:" "RETN MUTATED"          
clus
  RETN MUTATED RETN WILD-TYPE 
             1             21 
    TCGA-F2-6880     TCGA-FB-A4P5     TCGA-FB-A4P6     TCGA-FB-A5VM 
"RETN WILD-TYPE" "RETN WILD-TYPE" "RETN WILD-TYPE" "RETN WILD-TYPE" 
    TCGA-FB-A78T     TCGA-FB-A7DR     TCGA-H6-8124     TCGA-H6-A45N 
"RETN WILD-TYPE" "RETN WILD-TYPE" "RETN WILD-TYPE" "RETN WILD-TYPE" 
    TCGA-H8-A6C1     TCGA-IB-7644     TCGA-IB-7649     TCGA-IB-7651 
"RETN WILD-TYPE" "RETN WILD-TYPE" "RETN WILD-TYPE" "RETN WILD-TYPE" 
    TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887     TCGA-IB-7891 
"RETN WILD-TYPE" "RETN WILD-TYPE" "RETN WILD-TYPE" "RETN WILD-TYPE" 
    TCGA-IB-8126     TCGA-IB-A5SS     TCGA-IB-A6UG     TCGA-LB-A7SX 
"RETN WILD-TYPE" "RETN WILD-TYPE" "RETN WILD-TYPE" "RETN WILD-TYPE" 
    TCGA-OE-A75W 
"RETN WILD-TYPE" 
D236V10, continuous
[1] "Remove cluster labels:" "RETN MUTATED"          
clus
  RETN MUTATED RETN WILD-TYPE 
             1             18 
    TCGA-FB-A4P5     TCGA-FB-A4P6     TCGA-FB-A5VM     TCGA-FB-A78T 
"RETN WILD-TYPE" "RETN WILD-TYPE" "RETN WILD-TYPE" "RETN WILD-TYPE" 
    TCGA-FB-A7DR     TCGA-H6-8124     TCGA-H8-A6C1     TCGA-IB-7644 
"RETN WILD-TYPE" "RETN WILD-TYPE" "RETN WILD-TYPE" "RETN WILD-TYPE" 
    TCGA-IB-7649     TCGA-IB-7651     TCGA-IB-7885     TCGA-IB-7886 
"RETN WILD-TYPE" "RETN WILD-TYPE" "RETN WILD-TYPE" "RETN WILD-TYPE" 
    TCGA-IB-7891     TCGA-IB-8126     TCGA-IB-A5SS     TCGA-IB-A6UG 
"RETN WILD-TYPE" "RETN WILD-TYPE" "RETN WILD-TYPE" "RETN WILD-TYPE" 
    TCGA-LB-A7SX     TCGA-OE-A75W 
"RETN WILD-TYPE" "RETN WILD-TYPE" 
                vv
clus             R0 R1 RX
  RETN MUTATED    1  2  0
  RETN WILD-TYPE 41 22  2
D236V11, multiclass
    clus
vv   RETN MUTATED RETN WILD-TYPE
  R0            1             41
  R1            2             22
  RX            0              2
D236V12, continuous

Clustering(237) Variable = PRKCD MUTATION ANALYSIS
D237V1, survival
                 sevent
clus2              0  1
  PRKCD MUTATED    3  1
  PRKCD WILD-TYPE 37 28
  PRKCD MUTATED PRKCD WILD-TYPE 
              4              65 
  PRKCD MUTATED PRKCD WILD-TYPE 
              1              28 
$`PRKCD MUTATED`
TCGA-H6-8124 TCGA-HZ-7926 TCGA-HZ-8317 TCGA-IB-7651 
       12.89         0.26         0.53        19.82 

$`PRKCD WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P5 TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR 
        0.13        11.93        12.66         2.47         0.03         5.46 
TCGA-FZ-5920 TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7289 
        2.01        36.20        20.81         7.66        13.02         7.89 
TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 
        0.92         0.66         0.13         0.26        12.13        11.87 
TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8636 
        0.62         0.79         0.69         3.95         0.92         0.16 
TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 
        2.99         0.76         0.95         6.38         1.51        11.41 
TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7652 TCGA-IB-7885 
       49.38         4.77        21.90        15.35        15.65        27.98 
TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 
        4.04         3.62        43.79        15.81        19.66        16.04 
TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP 
        3.85        15.98         0.56        17.16        10.82         9.86 
TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W 
        7.20        15.12         0.26         1.35         4.18         3.62 
TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
        8.12        13.68        16.80        14.14        18.67 

  PRKCD MUTATED PRKCD WILD-TYPE 
           0.26            0.03 
  PRKCD MUTATED PRKCD WILD-TYPE 
          19.82           49.38 
  PRKCD MUTATED PRKCD WILD-TYPE 
           6.71            7.66 
[1] "0.3 - 19.8 (6.7)" "0.0 - 49.4 (7.7)"
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE"   "PRKCD MUTATED" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"PRKCD WILD-TYPE"   "PRKCD MUTATED" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE"   "PRKCD MUTATED" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE"   "PRKCD MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" 
     TCGA-US-A77J 
"PRKCD WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE"   "PRKCD MUTATED" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"PRKCD WILD-TYPE"   "PRKCD MUTATED" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE"   "PRKCD MUTATED" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE"   "PRKCD MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" 
     TCGA-US-A77J 
"PRKCD WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE"   "PRKCD MUTATED" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"PRKCD WILD-TYPE"   "PRKCD MUTATED" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE"   "PRKCD MUTATED" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE"   "PRKCD MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" 
     TCGA-US-A77J 
"PRKCD WILD-TYPE" 
[1] "hr=" "1.6"
D237V2, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  PRKCD MUTATED          0        0         0         4         0        0
  PRKCD WILD-TYPE        1        4        11        47         2        3
D237V3, multiclass
                 vv
clus              T1+T2 T3+T4
  PRKCD MUTATED       0     4
  PRKCD WILD-TYPE     6    62
D237V4, multiclass
       clus
vv      PRKCD MUTATED PRKCD WILD-TYPE
  T1+T2             0               6
  T3+T4             4              62
D237V5, binary
                 cls
clus               0  1
  PRKCD MUTATED    0  4
  PRKCD WILD-TYPE 17 50
[1] "tbl2"
                 cls
clus              [,1] [,2]
  PRKCD MUTATED      0    4
  PRKCD WILD-TYPE   17   50
   clus
vv  PRKCD MUTATED PRKCD WILD-TYPE
  0             0              17
  1             4              50
                 vv
clus              M0 M1 MX
  PRKCD MUTATED    2  0  2
  PRKCD WILD-TYPE 37  3 28
D237V6, multiclass
    clus
vv   PRKCD MUTATED PRKCD WILD-TYPE
  M0             2              37
  M1             0               3
  MX             2              28
D237V7, binary
                 cls
clus               0  1
  PRKCD MUTATED    3  1
  PRKCD WILD-TYPE 33 35
[1] "tbl2"
                 cls
clus              [,1] [,2]
  PRKCD MUTATED      3    1
  PRKCD WILD-TYPE   33   35
        clus
vv       PRKCD MUTATED PRKCD WILD-TYPE
  FEMALE             3              33
  MALE               1              35
                 vv
clus              PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  PRKCD MUTATED                                     4
  PRKCD WILD-TYPE                                  61
                 vv
clus              PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  PRKCD MUTATED                                       0
  PRKCD WILD-TYPE                                     4
                 vv
clus              PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  PRKCD MUTATED                                                  0
  PRKCD WILD-TYPE                                                2
D237V8, multiclass
                                                  clus
vv                                                 PRKCD MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                          4
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                        0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA             0
                                                  clus
vv                                                 PRKCD WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                           61
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                          4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA               2
D237V9, continuous
[1] "Remove cluster labels:" "PRKCD MUTATED"         
clus
  PRKCD MUTATED PRKCD WILD-TYPE 
              2              20 
     TCGA-F2-6880      TCGA-FB-A4P5      TCGA-FB-A4P6      TCGA-FB-A5VM 
"PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" 
     TCGA-FB-A78T      TCGA-FB-A7DR      TCGA-H6-A45N      TCGA-H8-A6C1 
"PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" 
     TCGA-IB-7644      TCGA-IB-7649      TCGA-IB-7885      TCGA-IB-7886 
"PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" 
     TCGA-IB-7887      TCGA-IB-7891      TCGA-IB-8126      TCGA-IB-8127 
"PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" 
     TCGA-IB-A5SS      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" 
D237V10, continuous
[1] "Remove cluster labels:" "PRKCD MUTATED"         
clus
  PRKCD MUTATED PRKCD WILD-TYPE 
              2              17 
     TCGA-FB-A4P5      TCGA-FB-A4P6      TCGA-FB-A5VM      TCGA-FB-A78T 
"PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" 
     TCGA-FB-A7DR      TCGA-H8-A6C1      TCGA-IB-7644      TCGA-IB-7649 
"PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" 
     TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7891      TCGA-IB-8126 
"PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" 
     TCGA-IB-8127      TCGA-IB-A5SS      TCGA-IB-A6UG      TCGA-LB-A7SX 
"PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" "PRKCD WILD-TYPE" 
     TCGA-OE-A75W 
"PRKCD WILD-TYPE" 
                 vv
clus              R0 R1 RX
  PRKCD MUTATED    2  1  1
  PRKCD WILD-TYPE 40 23  1
D237V11, multiclass
    clus
vv   PRKCD MUTATED PRKCD WILD-TYPE
  R0             2              40
  R1             1              23
  RX             1               1
D237V12, continuous

Clustering(238) Variable = ZNF326 MUTATION ANALYSIS
D238V1, survival
                  sevent
clus2               0  1
  ZNF326 MUTATED    2  3
  ZNF326 WILD-TYPE 38 26
  ZNF326 MUTATED ZNF326 WILD-TYPE 
               5               64 
  ZNF326 MUTATED ZNF326 WILD-TYPE 
               3               26 
$`ZNF326 MUTATED`
TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-A49G TCGA-IB-7651 TCGA-IB-7897 
        0.69         3.95         0.76        19.82        15.98 

$`ZNF326 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P5 TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR 
        0.13        11.93        12.66         2.47         0.03         5.46 
TCGA-FZ-5920 TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 
        2.01        36.20        20.81        12.89         7.66        13.02 
TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 
        7.89         0.92         0.66         0.13         0.26        12.13 
TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8315 TCGA-HZ-8317 
       11.87         0.26         0.62         0.79         0.92         0.53 
TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 
        0.16         2.99         0.95         6.38         1.51        11.41 
TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7652 TCGA-IB-7885 
       49.38         4.77        21.90        15.35        15.65        27.98 
TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 
        4.04         3.62        43.79        15.81        19.66        16.04 
TCGA-IB-7893 TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ 
        3.85         0.56        17.16        10.82         9.86         7.20 
TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W TCGA-PZ-A5RE 
       15.12         0.26         1.35         4.18         3.62         8.12 
TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
       13.68        16.80        14.14        18.67 

  ZNF326 MUTATED ZNF326 WILD-TYPE 
            0.69             0.03 
  ZNF326 MUTATED ZNF326 WILD-TYPE 
           19.82            49.38 
  ZNF326 MUTATED ZNF326 WILD-TYPE 
           3.950            7.775 
[1] "0.7 - 19.8 (4.0)" "0.0 - 49.4 (7.8)"
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
"ZNF326 WILD-TYPE" "ZNF326 WILD-TYPE" "ZNF326 WILD-TYPE" "ZNF326 WILD-TYPE" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"ZNF326 WILD-TYPE" "ZNF326 WILD-TYPE" "ZNF326 WILD-TYPE" "ZNF326 WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
"ZNF326 WILD-TYPE" "ZNF326 WILD-TYPE" "ZNF326 WILD-TYPE" "ZNF326 WILD-TYPE" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"ZNF326 WILD-TYPE" "ZNF326 WILD-TYPE" "ZNF326 WILD-TYPE" "ZNF326 WILD-TYPE" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
"ZNF326 WILD-TYPE" "ZNF326 WILD-TYPE" "ZNF326 WILD-TYPE" "ZNF326 WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
"ZNF326 WILD-TYPE" "ZNF326 WILD-TYPE" "ZNF326 WILD-TYPE" "ZNF326 WILD-TYPE" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"ZNF326 WILD-TYPE" "ZNF326 WILD-TYPE" "ZNF326 WILD-TYPE" "ZNF326 WILD-TYPE" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
  "ZNF326 MUTATED"   "ZNF326 MUTATED" "ZNF326 WILD-TYPE" "ZNF326 WILD-TYPE" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
"ZNF326 WILD-TYPE" "ZNF326 WILD-TYPE"   "ZNF326 MUTATED" "ZNF326 WILD-TYPE" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
"ZNF326 WILD-TYPE" "ZNF326 WILD-TYPE" "ZNF326 WILD-TYPE" "ZNF326 WILD-TYPE" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
"ZNF326 WILD-TYPE" "ZNF326 WILD-TYPE" "ZNF326 WILD-TYPE"   "ZNF326 MUTATED" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
"ZNF326 WILD-TYPE" "ZNF326 WILD-TYPE" "ZNF326 WILD-TYPE" "ZNF326 WILD-TYPE" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
"ZNF326 WILD-TYPE" "ZNF326 WILD-TYPE" "ZNF326 WILD-TYPE" "ZNF326 WILD-TYPE" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
"ZNF326 WILD-TYPE"   "ZNF326 MUTATED" "ZNF326 WILD-TYPE" "ZNF326 WILD-TYPE" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"ZNF326 WILD-TYPE" "ZNF326 WILD-TYPE" "ZNF326 WILD-TYPE" "ZNF326 WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"ZNF326 WILD-TYPE" "ZNF326 WILD-TYPE" "ZNF326 WILD-TYPE" "ZNF326 WILD-TYPE" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
"ZNF326 WILD-TYPE" "ZNF326 WILD-TYPE" "ZNF326 WILD-TYPE" "ZNF326 WILD-TYPE" 
      TCGA-US-A77J 
"ZNF326 WILD-TYPE" 
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
"ZNF326 WILD-TYPE" "ZNF326 WILD-TYPE" "ZNF326 WILD-TYPE" "ZNF326 WILD-TYPE" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"ZNF326 WILD-TYPE" "ZNF326 WILD-TYPE" "ZNF326 WILD-TYPE" "ZNF326 WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
"ZNF326 WILD-TYPE" "ZNF326 WILD-TYPE" "ZNF326 WILD-TYPE" "ZNF326 WILD-TYPE" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"ZNF326 WILD-TYPE" "ZNF326 WILD-TYPE" "ZNF326 WILD-TYPE" "ZNF326 WILD-TYPE" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
"ZNF326 WILD-TYPE" "ZNF326 WILD-TYPE" "ZNF326 WILD-TYPE" "ZNF326 WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
"ZNF326 WILD-TYPE" "ZNF326 WILD-TYPE" "ZNF326 WILD-TYPE" "ZNF326 WILD-TYPE" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"ZNF326 WILD-TYPE" "ZNF326 WILD-TYPE" "ZNF326 WILD-TYPE" "ZNF326 WILD-TYPE" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
  "ZNF326 MUTATED"   "ZNF326 MUTATED" "ZNF326 WILD-TYPE" "ZNF326 WILD-TYPE" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
"ZNF326 WILD-TYPE" "ZNF326 WILD-TYPE"   "ZNF326 MUTATED" "ZNF326 WILD-TYPE" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
"ZNF326 WILD-TYPE" "ZNF326 WILD-TYPE" "ZNF326 WILD-TYPE" "ZNF326 WILD-TYPE" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
"ZNF326 WILD-TYPE" "ZNF326 WILD-TYPE" "ZNF326 WILD-TYPE"   "ZNF326 MUTATED" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
"ZNF326 WILD-TYPE" "ZNF326 WILD-TYPE" "ZNF326 WILD-TYPE" "ZNF326 WILD-TYPE" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
"ZNF326 WILD-TYPE" "ZNF326 WILD-TYPE" "ZNF326 WILD-TYPE" "ZNF326 WILD-TYPE" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
"ZNF326 WILD-TYPE"   "ZNF326 MUTATED" "ZNF326 WILD-TYPE" "ZNF326 WILD-TYPE" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"ZNF326 WILD-TYPE" "ZNF326 WILD-TYPE" "ZNF326 WILD-TYPE" "ZNF326 WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"ZNF326 WILD-TYPE" "ZNF326 WILD-TYPE" "ZNF326 WILD-TYPE" "ZNF326 WILD-TYPE" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
"ZNF326 WILD-TYPE" "ZNF326 WILD-TYPE" "ZNF326 WILD-TYPE" "ZNF326 WILD-TYPE" 
      TCGA-US-A77J 
"ZNF326 WILD-TYPE" 
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
"ZNF326 WILD-TYPE" "ZNF326 WILD-TYPE" "ZNF326 WILD-TYPE" "ZNF326 WILD-TYPE" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"ZNF326 WILD-TYPE" "ZNF326 WILD-TYPE" "ZNF326 WILD-TYPE" "ZNF326 WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
"ZNF326 WILD-TYPE" "ZNF326 WILD-TYPE" "ZNF326 WILD-TYPE" "ZNF326 WILD-TYPE" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"ZNF326 WILD-TYPE" "ZNF326 WILD-TYPE" "ZNF326 WILD-TYPE" "ZNF326 WILD-TYPE" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
"ZNF326 WILD-TYPE" "ZNF326 WILD-TYPE" "ZNF326 WILD-TYPE" "ZNF326 WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
"ZNF326 WILD-TYPE" "ZNF326 WILD-TYPE" "ZNF326 WILD-TYPE" "ZNF326 WILD-TYPE" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"ZNF326 WILD-TYPE" "ZNF326 WILD-TYPE" "ZNF326 WILD-TYPE" "ZNF326 WILD-TYPE" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
  "ZNF326 MUTATED"   "ZNF326 MUTATED" "ZNF326 WILD-TYPE" "ZNF326 WILD-TYPE" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
"ZNF326 WILD-TYPE" "ZNF326 WILD-TYPE"   "ZNF326 MUTATED" "ZNF326 WILD-TYPE" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
"ZNF326 WILD-TYPE" "ZNF326 WILD-TYPE" "ZNF326 WILD-TYPE" "ZNF326 WILD-TYPE" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
"ZNF326 WILD-TYPE" "ZNF326 WILD-TYPE" "ZNF326 WILD-TYPE"   "ZNF326 MUTATED" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
"ZNF326 WILD-TYPE" "ZNF326 WILD-TYPE" "ZNF326 WILD-TYPE" "ZNF326 WILD-TYPE" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
"ZNF326 WILD-TYPE" "ZNF326 WILD-TYPE" "ZNF326 WILD-TYPE" "ZNF326 WILD-TYPE" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
"ZNF326 WILD-TYPE"   "ZNF326 MUTATED" "ZNF326 WILD-TYPE" "ZNF326 WILD-TYPE" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"ZNF326 WILD-TYPE" "ZNF326 WILD-TYPE" "ZNF326 WILD-TYPE" "ZNF326 WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"ZNF326 WILD-TYPE" "ZNF326 WILD-TYPE" "ZNF326 WILD-TYPE" "ZNF326 WILD-TYPE" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
"ZNF326 WILD-TYPE" "ZNF326 WILD-TYPE" "ZNF326 WILD-TYPE" "ZNF326 WILD-TYPE" 
      TCGA-US-A77J 
"ZNF326 WILD-TYPE" 
[1] "hr=" "1.6"
D238V2, continuous
                  vv
clus               STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  ZNF326 MUTATED          0        0         0         5         0        0
  ZNF326 WILD-TYPE        1        4        11        46         2        3
D238V3, multiclass
                  vv
clus               T1+T2 T3+T4
  ZNF326 MUTATED       1     4
  ZNF326 WILD-TYPE     5    62
D238V4, multiclass
       clus
vv      ZNF326 MUTATED ZNF326 WILD-TYPE
  T1+T2              1                5
  T3+T4              4               62
D238V5, binary
                  cls
clus                0  1
  ZNF326 MUTATED    0  5
  ZNF326 WILD-TYPE 17 49
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ZNF326 MUTATED      0    5
  ZNF326 WILD-TYPE   17   49
   clus
vv  ZNF326 MUTATED ZNF326 WILD-TYPE
  0              0               17
  1              5               49
                  vv
clus               M0 M1 MX
  ZNF326 MUTATED    2  0  3
  ZNF326 WILD-TYPE 37  3 27
D238V6, multiclass
    clus
vv   ZNF326 MUTATED ZNF326 WILD-TYPE
  M0              2               37
  M1              0                3
  MX              3               27
D238V7, binary
                  cls
clus                0  1
  ZNF326 MUTATED    4  1
  ZNF326 WILD-TYPE 32 35
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ZNF326 MUTATED      4    1
  ZNF326 WILD-TYPE   32   35
        clus
vv       ZNF326 MUTATED ZNF326 WILD-TYPE
  FEMALE              4               32
  MALE                1               35
                  vv
clus               PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  ZNF326 MUTATED                                     5
  ZNF326 WILD-TYPE                                  60
                  vv
clus               PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  ZNF326 MUTATED                                       0
  ZNF326 WILD-TYPE                                     4
                  vv
clus               PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  ZNF326 MUTATED                                                  0
  ZNF326 WILD-TYPE                                                2
D238V8, multiclass
                                                  clus
vv                                                 ZNF326 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                           5
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                         0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA              0
                                                  clus
vv                                                 ZNF326 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                            60
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                           4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                2
D238V9, continuous
[1] "Remove cluster labels:" "ZNF326 MUTATED"        
clus
  ZNF326 MUTATED ZNF326 WILD-TYPE 
               1               21 
      TCGA-F2-6880       TCGA-FB-A4P5       TCGA-FB-A4P6       TCGA-FB-A5VM 
"ZNF326 WILD-TYPE" "ZNF326 WILD-TYPE" "ZNF326 WILD-TYPE" "ZNF326 WILD-TYPE" 
      TCGA-FB-A78T       TCGA-FB-A7DR       TCGA-H6-8124       TCGA-H6-A45N 
"ZNF326 WILD-TYPE" "ZNF326 WILD-TYPE" "ZNF326 WILD-TYPE" "ZNF326 WILD-TYPE" 
      TCGA-H8-A6C1       TCGA-IB-7644       TCGA-IB-7649       TCGA-IB-7885 
"ZNF326 WILD-TYPE" "ZNF326 WILD-TYPE" "ZNF326 WILD-TYPE" "ZNF326 WILD-TYPE" 
      TCGA-IB-7886       TCGA-IB-7887       TCGA-IB-7891       TCGA-IB-8126 
"ZNF326 WILD-TYPE" "ZNF326 WILD-TYPE" "ZNF326 WILD-TYPE" "ZNF326 WILD-TYPE" 
      TCGA-IB-8127       TCGA-IB-A5SS       TCGA-IB-A6UG       TCGA-LB-A7SX 
"ZNF326 WILD-TYPE" "ZNF326 WILD-TYPE" "ZNF326 WILD-TYPE" "ZNF326 WILD-TYPE" 
      TCGA-OE-A75W 
"ZNF326 WILD-TYPE" 
D238V10, continuous
[1] "Remove cluster labels:" "ZNF326 MUTATED"        
clus
  ZNF326 MUTATED ZNF326 WILD-TYPE 
               1               18 
      TCGA-FB-A4P5       TCGA-FB-A4P6       TCGA-FB-A5VM       TCGA-FB-A78T 
"ZNF326 WILD-TYPE" "ZNF326 WILD-TYPE" "ZNF326 WILD-TYPE" "ZNF326 WILD-TYPE" 
      TCGA-FB-A7DR       TCGA-H6-8124       TCGA-H8-A6C1       TCGA-IB-7644 
"ZNF326 WILD-TYPE" "ZNF326 WILD-TYPE" "ZNF326 WILD-TYPE" "ZNF326 WILD-TYPE" 
      TCGA-IB-7649       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7891 
"ZNF326 WILD-TYPE" "ZNF326 WILD-TYPE" "ZNF326 WILD-TYPE" "ZNF326 WILD-TYPE" 
      TCGA-IB-8126       TCGA-IB-8127       TCGA-IB-A5SS       TCGA-IB-A6UG 
"ZNF326 WILD-TYPE" "ZNF326 WILD-TYPE" "ZNF326 WILD-TYPE" "ZNF326 WILD-TYPE" 
      TCGA-LB-A7SX       TCGA-OE-A75W 
"ZNF326 WILD-TYPE" "ZNF326 WILD-TYPE" 
                  vv
clus               R0 R1 RX
  ZNF326 MUTATED    3  2  0
  ZNF326 WILD-TYPE 39 22  2
D238V11, multiclass
    clus
vv   ZNF326 MUTATED ZNF326 WILD-TYPE
  R0              3               39
  R1              2               22
  RX              0                2
D238V12, continuous

Clustering(239) Variable = MED12L MUTATION ANALYSIS
D239V1, survival
                  sevent
clus2               0  1
  MED12L MUTATED    8  4
  MED12L WILD-TYPE 32 25
  MED12L MUTATED MED12L WILD-TYPE 
              12               57 
  MED12L MUTATED MED12L WILD-TYPE 
               4               25 
$`MED12L MUTATED`
TCGA-FB-A4P6 TCGA-FB-A5VM TCGA-HZ-7919 TCGA-HZ-8001 TCGA-HZ-8003 TCGA-HZ-8636 
       11.93         2.47         0.66         0.62         0.69         0.16 
TCGA-IB-7649 TCGA-IB-7651 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-8127 TCGA-PZ-A5RE 
       15.35        19.82         3.62        43.79        17.16         8.12 

$`MED12L WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P5 TCGA-FB-A545 TCGA-FB-A78T TCGA-FB-A7DR TCGA-FZ-5920 TCGA-FZ-5922 
        0.13        12.66         0.03         5.46         2.01        36.20 
TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7289 TCGA-HZ-7918 
       20.81        12.89         7.66        13.02         7.89         0.92 
TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8002 
        0.13         0.26        12.13        11.87         0.26         0.79 
TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H 
        3.95         0.92         0.53         2.99         0.76         0.95 
TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 
        6.38         1.51        11.41        49.38         4.77        21.90 
TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 
       15.65        27.98         4.04        15.81        19.66        16.04 
TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ 
        3.85        15.98         0.56        10.82         9.86         7.20 
TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W TCGA-Q3-A5QY 
       15.12         0.26         1.35         4.18         3.62        13.68 
TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
       16.80        14.14        18.67 

  MED12L MUTATED MED12L WILD-TYPE 
            0.16             0.03 
  MED12L MUTATED MED12L WILD-TYPE 
           43.79            49.38 
  MED12L MUTATED MED12L WILD-TYPE 
            5.87             7.66 
[1] "0.2 - 43.8 (5.9)" "0.0 - 49.4 (7.7)"
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
"MED12L WILD-TYPE" "MED12L WILD-TYPE" "MED12L WILD-TYPE" "MED12L WILD-TYPE" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"MED12L WILD-TYPE" "MED12L WILD-TYPE" "MED12L WILD-TYPE"   "MED12L MUTATED" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
"MED12L WILD-TYPE"   "MED12L MUTATED" "MED12L WILD-TYPE" "MED12L WILD-TYPE" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"MED12L WILD-TYPE" "MED12L WILD-TYPE" "MED12L WILD-TYPE" "MED12L WILD-TYPE" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
"MED12L WILD-TYPE" "MED12L WILD-TYPE" "MED12L WILD-TYPE" "MED12L WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
  "MED12L MUTATED" "MED12L WILD-TYPE" "MED12L WILD-TYPE" "MED12L WILD-TYPE" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"MED12L WILD-TYPE" "MED12L WILD-TYPE"   "MED12L MUTATED" "MED12L WILD-TYPE" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
  "MED12L MUTATED" "MED12L WILD-TYPE" "MED12L WILD-TYPE" "MED12L WILD-TYPE" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
  "MED12L MUTATED" "MED12L WILD-TYPE" "MED12L WILD-TYPE" "MED12L WILD-TYPE" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
"MED12L WILD-TYPE" "MED12L WILD-TYPE" "MED12L WILD-TYPE" "MED12L WILD-TYPE" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
"MED12L WILD-TYPE" "MED12L WILD-TYPE"   "MED12L MUTATED"   "MED12L MUTATED" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
"MED12L WILD-TYPE" "MED12L WILD-TYPE" "MED12L WILD-TYPE"   "MED12L MUTATED" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
  "MED12L MUTATED" "MED12L WILD-TYPE" "MED12L WILD-TYPE" "MED12L WILD-TYPE" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
"MED12L WILD-TYPE" "MED12L WILD-TYPE" "MED12L WILD-TYPE"   "MED12L MUTATED" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"MED12L WILD-TYPE" "MED12L WILD-TYPE" "MED12L WILD-TYPE" "MED12L WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"MED12L WILD-TYPE" "MED12L WILD-TYPE" "MED12L WILD-TYPE" "MED12L WILD-TYPE" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
  "MED12L MUTATED" "MED12L WILD-TYPE" "MED12L WILD-TYPE" "MED12L WILD-TYPE" 
      TCGA-US-A77J 
"MED12L WILD-TYPE" 
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
"MED12L WILD-TYPE" "MED12L WILD-TYPE" "MED12L WILD-TYPE" "MED12L WILD-TYPE" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"MED12L WILD-TYPE" "MED12L WILD-TYPE" "MED12L WILD-TYPE"   "MED12L MUTATED" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
"MED12L WILD-TYPE"   "MED12L MUTATED" "MED12L WILD-TYPE" "MED12L WILD-TYPE" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"MED12L WILD-TYPE" "MED12L WILD-TYPE" "MED12L WILD-TYPE" "MED12L WILD-TYPE" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
"MED12L WILD-TYPE" "MED12L WILD-TYPE" "MED12L WILD-TYPE" "MED12L WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
  "MED12L MUTATED" "MED12L WILD-TYPE" "MED12L WILD-TYPE" "MED12L WILD-TYPE" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"MED12L WILD-TYPE" "MED12L WILD-TYPE"   "MED12L MUTATED" "MED12L WILD-TYPE" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
  "MED12L MUTATED" "MED12L WILD-TYPE" "MED12L WILD-TYPE" "MED12L WILD-TYPE" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
  "MED12L MUTATED" "MED12L WILD-TYPE" "MED12L WILD-TYPE" "MED12L WILD-TYPE" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
"MED12L WILD-TYPE" "MED12L WILD-TYPE" "MED12L WILD-TYPE" "MED12L WILD-TYPE" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
"MED12L WILD-TYPE" "MED12L WILD-TYPE"   "MED12L MUTATED"   "MED12L MUTATED" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
"MED12L WILD-TYPE" "MED12L WILD-TYPE" "MED12L WILD-TYPE"   "MED12L MUTATED" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
  "MED12L MUTATED" "MED12L WILD-TYPE" "MED12L WILD-TYPE" "MED12L WILD-TYPE" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
"MED12L WILD-TYPE" "MED12L WILD-TYPE" "MED12L WILD-TYPE"   "MED12L MUTATED" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"MED12L WILD-TYPE" "MED12L WILD-TYPE" "MED12L WILD-TYPE" "MED12L WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"MED12L WILD-TYPE" "MED12L WILD-TYPE" "MED12L WILD-TYPE" "MED12L WILD-TYPE" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
  "MED12L MUTATED" "MED12L WILD-TYPE" "MED12L WILD-TYPE" "MED12L WILD-TYPE" 
      TCGA-US-A77J 
"MED12L WILD-TYPE" 
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
"MED12L WILD-TYPE" "MED12L WILD-TYPE" "MED12L WILD-TYPE" "MED12L WILD-TYPE" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"MED12L WILD-TYPE" "MED12L WILD-TYPE" "MED12L WILD-TYPE"   "MED12L MUTATED" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
"MED12L WILD-TYPE"   "MED12L MUTATED" "MED12L WILD-TYPE" "MED12L WILD-TYPE" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"MED12L WILD-TYPE" "MED12L WILD-TYPE" "MED12L WILD-TYPE" "MED12L WILD-TYPE" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
"MED12L WILD-TYPE" "MED12L WILD-TYPE" "MED12L WILD-TYPE" "MED12L WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
  "MED12L MUTATED" "MED12L WILD-TYPE" "MED12L WILD-TYPE" "MED12L WILD-TYPE" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"MED12L WILD-TYPE" "MED12L WILD-TYPE"   "MED12L MUTATED" "MED12L WILD-TYPE" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
  "MED12L MUTATED" "MED12L WILD-TYPE" "MED12L WILD-TYPE" "MED12L WILD-TYPE" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
  "MED12L MUTATED" "MED12L WILD-TYPE" "MED12L WILD-TYPE" "MED12L WILD-TYPE" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
"MED12L WILD-TYPE" "MED12L WILD-TYPE" "MED12L WILD-TYPE" "MED12L WILD-TYPE" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
"MED12L WILD-TYPE" "MED12L WILD-TYPE"   "MED12L MUTATED"   "MED12L MUTATED" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
"MED12L WILD-TYPE" "MED12L WILD-TYPE" "MED12L WILD-TYPE"   "MED12L MUTATED" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
  "MED12L MUTATED" "MED12L WILD-TYPE" "MED12L WILD-TYPE" "MED12L WILD-TYPE" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
"MED12L WILD-TYPE" "MED12L WILD-TYPE" "MED12L WILD-TYPE"   "MED12L MUTATED" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"MED12L WILD-TYPE" "MED12L WILD-TYPE" "MED12L WILD-TYPE" "MED12L WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"MED12L WILD-TYPE" "MED12L WILD-TYPE" "MED12L WILD-TYPE" "MED12L WILD-TYPE" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
  "MED12L MUTATED" "MED12L WILD-TYPE" "MED12L WILD-TYPE" "MED12L WILD-TYPE" 
      TCGA-US-A77J 
"MED12L WILD-TYPE" 
[1] "hr=" "1.5"
D239V2, continuous
                  vv
clus               STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  MED12L MUTATED          0        1         1         8         1        1
  MED12L WILD-TYPE        1        3        10        43         1        2
D239V3, multiclass
                  vv
clus               T1+T2 T3+T4
  MED12L MUTATED       1    11
  MED12L WILD-TYPE     5    55
D239V4, multiclass
       clus
vv      MED12L MUTATED MED12L WILD-TYPE
  T1+T2              1                5
  T3+T4             11               55
D239V5, binary
                  cls
clus                0  1
  MED12L MUTATED    4  8
  MED12L WILD-TYPE 13 46
[1] "tbl2"
                  cls
clus               [,1] [,2]
  MED12L MUTATED      4    8
  MED12L WILD-TYPE   13   46
   clus
vv  MED12L MUTATED MED12L WILD-TYPE
  0              4               13
  1              8               46
                  vv
clus               M0 M1 MX
  MED12L MUTATED    7  1  4
  MED12L WILD-TYPE 32  2 26
D239V6, multiclass
    clus
vv   MED12L MUTATED MED12L WILD-TYPE
  M0              7               32
  M1              1                2
  MX              4               26
D239V7, binary
                  cls
clus                0  1
  MED12L MUTATED    8  4
  MED12L WILD-TYPE 28 32
[1] "tbl2"
                  cls
clus               [,1] [,2]
  MED12L MUTATED      8    4
  MED12L WILD-TYPE   28   32
        clus
vv       MED12L MUTATED MED12L WILD-TYPE
  FEMALE              8               28
  MALE                4               32
                  vv
clus               PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  MED12L MUTATED                                    12
  MED12L WILD-TYPE                                  53
                  vv
clus               PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  MED12L MUTATED                                       0
  MED12L WILD-TYPE                                     4
                  vv
clus               PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  MED12L MUTATED                                                  0
  MED12L WILD-TYPE                                                2
D239V8, multiclass
                                                  clus
vv                                                 MED12L MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                          12
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                         0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA              0
                                                  clus
vv                                                 MED12L WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                            53
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                           4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                2
D239V9, continuous
D239V10, continuous
                  vv
clus               R0 R1 RX
  MED12L MUTATED    5  5  0
  MED12L WILD-TYPE 37 19  2
D239V11, multiclass
    clus
vv   MED12L MUTATED MED12L WILD-TYPE
  R0              5               37
  R1              5               19
  RX              0                2
D239V12, continuous

Clustering(240) Variable = ATP2B3 MUTATION ANALYSIS
D240V1, survival
                  sevent
clus2               0  1
  ATP2B3 MUTATED    1  5
  ATP2B3 WILD-TYPE 39 24
  ATP2B3 MUTATED ATP2B3 WILD-TYPE 
               6               63 
  ATP2B3 MUTATED ATP2B3 WILD-TYPE 
               5               24 
$`ATP2B3 MUTATED`
TCGA-H6-A45N TCGA-IB-7644 TCGA-IB-7651 TCGA-IB-7897 TCGA-PZ-A5RE TCGA-US-A77E 
        7.66        11.41        19.82        15.98         8.12        14.14 

$`ATP2B3 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P5 TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR 
        0.13        11.93        12.66         2.47         0.03         5.46 
TCGA-FZ-5920 TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 TCGA-H8-A6C1 TCGA-HZ-7289 
        2.01        36.20        20.81        12.89        13.02         7.89 
TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 
        0.92         0.66         0.13         0.26        12.13        11.87 
TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 
        0.26         0.62         0.79         0.69         3.95         0.92 
TCGA-HZ-8317 TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH 
        0.53         0.16         2.99         0.76         0.95         6.38 
TCGA-HZ-A4BK TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7652 
        1.51        49.38         4.77        21.90        15.35        15.65 
TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 
       27.98         4.04         3.62        43.79        15.81        19.66 
TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP 
       16.04         3.85         0.56        17.16        10.82         9.86 
TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W 
        7.20        15.12         0.26         1.35         4.18         3.62 
TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77J 
       13.68        16.80        18.67 

  ATP2B3 MUTATED ATP2B3 WILD-TYPE 
            7.66             0.03 
  ATP2B3 MUTATED ATP2B3 WILD-TYPE 
           19.82            49.38 
  ATP2B3 MUTATED ATP2B3 WILD-TYPE 
          12.775            6.380 
[1] "7.7 - 19.8 (12.8)" "0.0 - 49.4 (6.4)" 
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
"ATP2B3 WILD-TYPE" "ATP2B3 WILD-TYPE" "ATP2B3 WILD-TYPE" "ATP2B3 WILD-TYPE" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"ATP2B3 WILD-TYPE" "ATP2B3 WILD-TYPE" "ATP2B3 WILD-TYPE" "ATP2B3 WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
"ATP2B3 WILD-TYPE" "ATP2B3 WILD-TYPE" "ATP2B3 WILD-TYPE" "ATP2B3 WILD-TYPE" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"ATP2B3 WILD-TYPE" "ATP2B3 WILD-TYPE" "ATP2B3 WILD-TYPE" "ATP2B3 WILD-TYPE" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
  "ATP2B3 MUTATED" "ATP2B3 WILD-TYPE" "ATP2B3 WILD-TYPE" "ATP2B3 WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
"ATP2B3 WILD-TYPE" "ATP2B3 WILD-TYPE" "ATP2B3 WILD-TYPE" "ATP2B3 WILD-TYPE" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"ATP2B3 WILD-TYPE" "ATP2B3 WILD-TYPE" "ATP2B3 WILD-TYPE" "ATP2B3 WILD-TYPE" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
"ATP2B3 WILD-TYPE" "ATP2B3 WILD-TYPE" "ATP2B3 WILD-TYPE" "ATP2B3 WILD-TYPE" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
"ATP2B3 WILD-TYPE" "ATP2B3 WILD-TYPE" "ATP2B3 WILD-TYPE" "ATP2B3 WILD-TYPE" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
"ATP2B3 WILD-TYPE" "ATP2B3 WILD-TYPE"   "ATP2B3 MUTATED" "ATP2B3 WILD-TYPE" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
"ATP2B3 WILD-TYPE" "ATP2B3 WILD-TYPE" "ATP2B3 WILD-TYPE"   "ATP2B3 MUTATED" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
"ATP2B3 WILD-TYPE" "ATP2B3 WILD-TYPE" "ATP2B3 WILD-TYPE" "ATP2B3 WILD-TYPE" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
"ATP2B3 WILD-TYPE" "ATP2B3 WILD-TYPE" "ATP2B3 WILD-TYPE" "ATP2B3 WILD-TYPE" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
"ATP2B3 WILD-TYPE"   "ATP2B3 MUTATED" "ATP2B3 WILD-TYPE" "ATP2B3 WILD-TYPE" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"ATP2B3 WILD-TYPE" "ATP2B3 WILD-TYPE" "ATP2B3 WILD-TYPE" "ATP2B3 WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"ATP2B3 WILD-TYPE" "ATP2B3 WILD-TYPE" "ATP2B3 WILD-TYPE" "ATP2B3 WILD-TYPE" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
  "ATP2B3 MUTATED" "ATP2B3 WILD-TYPE" "ATP2B3 WILD-TYPE"   "ATP2B3 MUTATED" 
      TCGA-US-A77J 
"ATP2B3 WILD-TYPE" 
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
"ATP2B3 WILD-TYPE" "ATP2B3 WILD-TYPE" "ATP2B3 WILD-TYPE" "ATP2B3 WILD-TYPE" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"ATP2B3 WILD-TYPE" "ATP2B3 WILD-TYPE" "ATP2B3 WILD-TYPE" "ATP2B3 WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
"ATP2B3 WILD-TYPE" "ATP2B3 WILD-TYPE" "ATP2B3 WILD-TYPE" "ATP2B3 WILD-TYPE" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"ATP2B3 WILD-TYPE" "ATP2B3 WILD-TYPE" "ATP2B3 WILD-TYPE" "ATP2B3 WILD-TYPE" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
  "ATP2B3 MUTATED" "ATP2B3 WILD-TYPE" "ATP2B3 WILD-TYPE" "ATP2B3 WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
"ATP2B3 WILD-TYPE" "ATP2B3 WILD-TYPE" "ATP2B3 WILD-TYPE" "ATP2B3 WILD-TYPE" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"ATP2B3 WILD-TYPE" "ATP2B3 WILD-TYPE" "ATP2B3 WILD-TYPE" "ATP2B3 WILD-TYPE" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
"ATP2B3 WILD-TYPE" "ATP2B3 WILD-TYPE" "ATP2B3 WILD-TYPE" "ATP2B3 WILD-TYPE" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
"ATP2B3 WILD-TYPE" "ATP2B3 WILD-TYPE" "ATP2B3 WILD-TYPE" "ATP2B3 WILD-TYPE" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
"ATP2B3 WILD-TYPE" "ATP2B3 WILD-TYPE"   "ATP2B3 MUTATED" "ATP2B3 WILD-TYPE" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
"ATP2B3 WILD-TYPE" "ATP2B3 WILD-TYPE" "ATP2B3 WILD-TYPE"   "ATP2B3 MUTATED" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
"ATP2B3 WILD-TYPE" "ATP2B3 WILD-TYPE" "ATP2B3 WILD-TYPE" "ATP2B3 WILD-TYPE" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
"ATP2B3 WILD-TYPE" "ATP2B3 WILD-TYPE" "ATP2B3 WILD-TYPE" "ATP2B3 WILD-TYPE" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
"ATP2B3 WILD-TYPE"   "ATP2B3 MUTATED" "ATP2B3 WILD-TYPE" "ATP2B3 WILD-TYPE" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"ATP2B3 WILD-TYPE" "ATP2B3 WILD-TYPE" "ATP2B3 WILD-TYPE" "ATP2B3 WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"ATP2B3 WILD-TYPE" "ATP2B3 WILD-TYPE" "ATP2B3 WILD-TYPE" "ATP2B3 WILD-TYPE" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
  "ATP2B3 MUTATED" "ATP2B3 WILD-TYPE" "ATP2B3 WILD-TYPE"   "ATP2B3 MUTATED" 
      TCGA-US-A77J 
"ATP2B3 WILD-TYPE" 
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
"ATP2B3 WILD-TYPE" "ATP2B3 WILD-TYPE" "ATP2B3 WILD-TYPE" "ATP2B3 WILD-TYPE" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"ATP2B3 WILD-TYPE" "ATP2B3 WILD-TYPE" "ATP2B3 WILD-TYPE" "ATP2B3 WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
"ATP2B3 WILD-TYPE" "ATP2B3 WILD-TYPE" "ATP2B3 WILD-TYPE" "ATP2B3 WILD-TYPE" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"ATP2B3 WILD-TYPE" "ATP2B3 WILD-TYPE" "ATP2B3 WILD-TYPE" "ATP2B3 WILD-TYPE" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
  "ATP2B3 MUTATED" "ATP2B3 WILD-TYPE" "ATP2B3 WILD-TYPE" "ATP2B3 WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
"ATP2B3 WILD-TYPE" "ATP2B3 WILD-TYPE" "ATP2B3 WILD-TYPE" "ATP2B3 WILD-TYPE" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"ATP2B3 WILD-TYPE" "ATP2B3 WILD-TYPE" "ATP2B3 WILD-TYPE" "ATP2B3 WILD-TYPE" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
"ATP2B3 WILD-TYPE" "ATP2B3 WILD-TYPE" "ATP2B3 WILD-TYPE" "ATP2B3 WILD-TYPE" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
"ATP2B3 WILD-TYPE" "ATP2B3 WILD-TYPE" "ATP2B3 WILD-TYPE" "ATP2B3 WILD-TYPE" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
"ATP2B3 WILD-TYPE" "ATP2B3 WILD-TYPE"   "ATP2B3 MUTATED" "ATP2B3 WILD-TYPE" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
"ATP2B3 WILD-TYPE" "ATP2B3 WILD-TYPE" "ATP2B3 WILD-TYPE"   "ATP2B3 MUTATED" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
"ATP2B3 WILD-TYPE" "ATP2B3 WILD-TYPE" "ATP2B3 WILD-TYPE" "ATP2B3 WILD-TYPE" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
"ATP2B3 WILD-TYPE" "ATP2B3 WILD-TYPE" "ATP2B3 WILD-TYPE" "ATP2B3 WILD-TYPE" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
"ATP2B3 WILD-TYPE"   "ATP2B3 MUTATED" "ATP2B3 WILD-TYPE" "ATP2B3 WILD-TYPE" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"ATP2B3 WILD-TYPE" "ATP2B3 WILD-TYPE" "ATP2B3 WILD-TYPE" "ATP2B3 WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"ATP2B3 WILD-TYPE" "ATP2B3 WILD-TYPE" "ATP2B3 WILD-TYPE" "ATP2B3 WILD-TYPE" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
  "ATP2B3 MUTATED" "ATP2B3 WILD-TYPE" "ATP2B3 WILD-TYPE"   "ATP2B3 MUTATED" 
      TCGA-US-A77J 
"ATP2B3 WILD-TYPE" 
[1] "hr=" "1.7"
D240V2, continuous
                  vv
clus               STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  ATP2B3 MUTATED          0        0         0         5         0        1
  ATP2B3 WILD-TYPE        1        4        11        46         2        2
D240V3, multiclass
                  vv
clus               T1+T2 T3+T4
  ATP2B3 MUTATED       0     6
  ATP2B3 WILD-TYPE     6    60
D240V4, multiclass
       clus
vv      ATP2B3 MUTATED ATP2B3 WILD-TYPE
  T1+T2              0                6
  T3+T4              6               60
D240V5, binary
                  cls
clus                0  1
  ATP2B3 MUTATED    0  6
  ATP2B3 WILD-TYPE 17 48
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ATP2B3 MUTATED      0    6
  ATP2B3 WILD-TYPE   17   48
   clus
vv  ATP2B3 MUTATED ATP2B3 WILD-TYPE
  0              0               17
  1              6               48
                  vv
clus               M0 M1 MX
  ATP2B3 MUTATED    2  1  3
  ATP2B3 WILD-TYPE 37  2 27
D240V6, multiclass
    clus
vv   ATP2B3 MUTATED ATP2B3 WILD-TYPE
  M0              2               37
  M1              1                2
  MX              3               27
D240V7, binary
                  cls
clus                0  1
  ATP2B3 MUTATED    5  1
  ATP2B3 WILD-TYPE 31 35
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ATP2B3 MUTATED      5    1
  ATP2B3 WILD-TYPE   31   35
        clus
vv       ATP2B3 MUTATED ATP2B3 WILD-TYPE
  FEMALE              5               31
  MALE                1               35
                  vv
clus               PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  ATP2B3 MUTATED                                     5
  ATP2B3 WILD-TYPE                                  60
                  vv
clus               PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  ATP2B3 MUTATED                                       1
  ATP2B3 WILD-TYPE                                     3
                  vv
clus               PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  ATP2B3 MUTATED                                                  0
  ATP2B3 WILD-TYPE                                                2
D240V8, multiclass
                                                  clus
vv                                                 ATP2B3 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                           5
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                         1
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA              0
                                                  clus
vv                                                 ATP2B3 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                            60
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                           3
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                2
D240V9, continuous
D240V10, continuous
[1] "Remove cluster labels:" "ATP2B3 MUTATED"        
clus
  ATP2B3 MUTATED ATP2B3 WILD-TYPE 
               2               17 
      TCGA-FB-A4P5       TCGA-FB-A4P6       TCGA-FB-A5VM       TCGA-FB-A78T 
"ATP2B3 WILD-TYPE" "ATP2B3 WILD-TYPE" "ATP2B3 WILD-TYPE" "ATP2B3 WILD-TYPE" 
      TCGA-FB-A7DR       TCGA-H6-8124       TCGA-H8-A6C1       TCGA-IB-7649 
"ATP2B3 WILD-TYPE" "ATP2B3 WILD-TYPE" "ATP2B3 WILD-TYPE" "ATP2B3 WILD-TYPE" 
      TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7891       TCGA-IB-8126 
"ATP2B3 WILD-TYPE" "ATP2B3 WILD-TYPE" "ATP2B3 WILD-TYPE" "ATP2B3 WILD-TYPE" 
      TCGA-IB-8127       TCGA-IB-A5SS       TCGA-IB-A6UG       TCGA-LB-A7SX 
"ATP2B3 WILD-TYPE" "ATP2B3 WILD-TYPE" "ATP2B3 WILD-TYPE" "ATP2B3 WILD-TYPE" 
      TCGA-OE-A75W 
"ATP2B3 WILD-TYPE" 
                  vv
clus               R0 R1 RX
  ATP2B3 MUTATED    2  2  0
  ATP2B3 WILD-TYPE 40 22  2
D240V11, multiclass
    clus
vv   ATP2B3 MUTATED ATP2B3 WILD-TYPE
  R0              2               40
  R1              2               22
  RX              0                2
D240V12, continuous

Clustering(241) Variable = FNDC7 MUTATION ANALYSIS
D241V1, survival
                 sevent
clus2              0  1
  FNDC7 MUTATED    1  4
  FNDC7 WILD-TYPE 39 25
  FNDC7 MUTATED FNDC7 WILD-TYPE 
              5              64 
  FNDC7 MUTATED FNDC7 WILD-TYPE 
              4              25 
$`FNDC7 MUTATED`
TCGA-H6-8124 TCGA-IB-7647 TCGA-IB-7887 TCGA-IB-7897 TCGA-US-A779 
       12.89        21.90         3.62        15.98        16.80 

$`FNDC7 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P5 TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR 
        0.13        11.93        12.66         2.47         0.03         5.46 
TCGA-FZ-5920 TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7289 
        2.01        36.20        20.81         7.66        13.02         7.89 
TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 
        0.92         0.66         0.13         0.26        12.13        11.87 
TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 
        0.26         0.62         0.79         0.69         3.95         0.92 
TCGA-HZ-8317 TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH 
        0.53         0.16         2.99         0.76         0.95         6.38 
TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7649 TCGA-IB-7651 
        1.51        11.41        49.38         4.77        15.35        19.82 
TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 
       15.65        27.98         4.04        43.79        15.81        19.66 
TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP 
       16.04         3.85         0.56        17.16        10.82         9.86 
TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W 
        7.20        15.12         0.26         1.35         4.18         3.62 
TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A77E TCGA-US-A77J 
        8.12        13.68        14.14        18.67 

  FNDC7 MUTATED FNDC7 WILD-TYPE 
           3.62            0.03 
  FNDC7 MUTATED FNDC7 WILD-TYPE 
          21.90           49.38 
  FNDC7 MUTATED FNDC7 WILD-TYPE 
          15.98            7.15 
[1] "3.6 - 21.9 (16.0)" "0.0 - 49.4 (7.2)" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE"   "FNDC7 MUTATED" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"FNDC7 WILD-TYPE"   "FNDC7 MUTATED" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE"   "FNDC7 MUTATED" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"FNDC7 WILD-TYPE"   "FNDC7 MUTATED" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE"   "FNDC7 MUTATED" "FNDC7 WILD-TYPE" 
     TCGA-US-A77J 
"FNDC7 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE"   "FNDC7 MUTATED" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"FNDC7 WILD-TYPE"   "FNDC7 MUTATED" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE"   "FNDC7 MUTATED" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"FNDC7 WILD-TYPE"   "FNDC7 MUTATED" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE"   "FNDC7 MUTATED" "FNDC7 WILD-TYPE" 
     TCGA-US-A77J 
"FNDC7 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE"   "FNDC7 MUTATED" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"FNDC7 WILD-TYPE"   "FNDC7 MUTATED" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE"   "FNDC7 MUTATED" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"FNDC7 WILD-TYPE"   "FNDC7 MUTATED" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE"   "FNDC7 MUTATED" "FNDC7 WILD-TYPE" 
     TCGA-US-A77J 
"FNDC7 WILD-TYPE" 
[1] "hr=" "1.2"
D241V2, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  FNDC7 MUTATED          0        0         0         5         0        0
  FNDC7 WILD-TYPE        1        4        11        46         2        3
D241V3, multiclass
                 vv
clus              T1+T2 T3+T4
  FNDC7 MUTATED       0     5
  FNDC7 WILD-TYPE     6    61
D241V4, multiclass
       clus
vv      FNDC7 MUTATED FNDC7 WILD-TYPE
  T1+T2             0               6
  T3+T4             5              61
D241V5, binary
                 cls
clus               0  1
  FNDC7 MUTATED    0  5
  FNDC7 WILD-TYPE 17 49
[1] "tbl2"
                 cls
clus              [,1] [,2]
  FNDC7 MUTATED      0    5
  FNDC7 WILD-TYPE   17   49
   clus
vv  FNDC7 MUTATED FNDC7 WILD-TYPE
  0             0              17
  1             5              49
                 vv
clus              M0 M1 MX
  FNDC7 MUTATED    4  0  1
  FNDC7 WILD-TYPE 35  3 29
D241V6, multiclass
    clus
vv   FNDC7 MUTATED FNDC7 WILD-TYPE
  M0             4              35
  M1             0               3
  MX             1              29
D241V7, binary
                 cls
clus               0  1
  FNDC7 MUTATED    5  0
  FNDC7 WILD-TYPE 31 36
[1] "tbl2"
                 cls
clus              [,1] [,2]
  FNDC7 MUTATED      5    0
  FNDC7 WILD-TYPE   31   36
        clus
vv       FNDC7 MUTATED FNDC7 WILD-TYPE
  FEMALE             5              31
  MALE               0              36
                 vv
clus              PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  FNDC7 MUTATED                                     5
  FNDC7 WILD-TYPE                                  60
                 vv
clus              PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  FNDC7 MUTATED                                       0
  FNDC7 WILD-TYPE                                     4
                 vv
clus              PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  FNDC7 MUTATED                                                  0
  FNDC7 WILD-TYPE                                                2
D241V8, multiclass
                                                  clus
vv                                                 FNDC7 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                          5
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                        0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA             0
                                                  clus
vv                                                 FNDC7 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                           60
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                          4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA               2
D241V9, continuous
[1] "Remove cluster labels:" "FNDC7 MUTATED"         
clus
  FNDC7 MUTATED FNDC7 WILD-TYPE 
              2              20 
     TCGA-F2-6880      TCGA-FB-A4P5      TCGA-FB-A4P6      TCGA-FB-A5VM 
"FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" 
     TCGA-FB-A78T      TCGA-FB-A7DR      TCGA-H6-A45N      TCGA-H8-A6C1 
"FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" 
     TCGA-IB-7644      TCGA-IB-7649      TCGA-IB-7651      TCGA-IB-7885 
"FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" 
     TCGA-IB-7886      TCGA-IB-7891      TCGA-IB-8126      TCGA-IB-8127 
"FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" 
     TCGA-IB-A5SS      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" 
D241V10, continuous
[1] "Remove cluster labels:" "FNDC7 MUTATED"         
clus
  FNDC7 MUTATED FNDC7 WILD-TYPE 
              1              18 
     TCGA-FB-A4P5      TCGA-FB-A4P6      TCGA-FB-A5VM      TCGA-FB-A78T 
"FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" 
     TCGA-FB-A7DR      TCGA-H8-A6C1      TCGA-IB-7644      TCGA-IB-7649 
"FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" 
     TCGA-IB-7651      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7891 
"FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" 
     TCGA-IB-8126      TCGA-IB-8127      TCGA-IB-A5SS      TCGA-IB-A6UG 
"FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" 
     TCGA-LB-A7SX      TCGA-OE-A75W 
"FNDC7 WILD-TYPE" "FNDC7 WILD-TYPE" 
                 vv
clus              R0 R1 RX
  FNDC7 MUTATED    3  2  0
  FNDC7 WILD-TYPE 39 22  2
D241V11, multiclass
    clus
vv   FNDC7 MUTATED FNDC7 WILD-TYPE
  R0             3              39
  R1             2              22
  RX             0               2
D241V12, continuous

Clustering(242) Variable = RBM45 MUTATION ANALYSIS
D242V1, survival
                 sevent
clus2              0  1
  RBM45 MUTATED    3  3
  RBM45 WILD-TYPE 37 26
  RBM45 MUTATED RBM45 WILD-TYPE 
              6              63 
  RBM45 MUTATED RBM45 WILD-TYPE 
              3              26 
$`RBM45 MUTATED`
TCGA-F2-7273 TCGA-FB-A545 TCGA-FB-A5VM TCGA-HZ-8636 TCGA-IB-7651 TCGA-US-A77E 
       11.84        12.66         2.47         0.16        19.82        14.14 

$`RBM45 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H TCGA-FB-A4P5 
       10.98         9.70         7.10         5.03        19.27         0.13 
TCGA-FB-A4P6 TCGA-FB-A78T TCGA-FB-A7DR TCGA-FZ-5920 TCGA-FZ-5922 TCGA-FZ-5923 
       11.93         0.03         5.46         2.01        36.20        20.81 
TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-7919 
       12.89         7.66        13.02         7.89         0.92         0.66 
TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8001 
        0.13         0.26        12.13        11.87         0.26         0.62 
TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8638 
        0.79         0.69         3.95         0.92         0.53         2.99 
TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7645 
        0.76         0.95         6.38         1.51        11.41        49.38 
TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7886 
        4.77        21.90        15.35        15.65        27.98         4.04 
TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-7893 
        3.62        43.79        15.81        19.66        16.04         3.85 
TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ 
       15.98         0.56        17.16        10.82         9.86         7.20 
TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W TCGA-PZ-A5RE 
       15.12         0.26         1.35         4.18         3.62         8.12 
TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77J 
       13.68        16.80        18.67 

  RBM45 MUTATED RBM45 WILD-TYPE 
           0.16            0.03 
  RBM45 MUTATED RBM45 WILD-TYPE 
          19.82           49.38 
  RBM45 MUTATED RBM45 WILD-TYPE 
          12.25            7.20 
[1] "0.2 - 19.8 (12.2)" "0.0 - 49.4 (7.2)" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"RBM45 WILD-TYPE" "RBM45 WILD-TYPE"   "RBM45 MUTATED" "RBM45 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"RBM45 WILD-TYPE" "RBM45 WILD-TYPE" "RBM45 WILD-TYPE" "RBM45 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
  "RBM45 MUTATED"   "RBM45 MUTATED" "RBM45 WILD-TYPE" "RBM45 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"RBM45 WILD-TYPE" "RBM45 WILD-TYPE" "RBM45 WILD-TYPE" "RBM45 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"RBM45 WILD-TYPE" "RBM45 WILD-TYPE" "RBM45 WILD-TYPE" "RBM45 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"RBM45 WILD-TYPE" "RBM45 WILD-TYPE" "RBM45 WILD-TYPE" "RBM45 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"RBM45 WILD-TYPE" "RBM45 WILD-TYPE" "RBM45 WILD-TYPE" "RBM45 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"RBM45 WILD-TYPE" "RBM45 WILD-TYPE" "RBM45 WILD-TYPE" "RBM45 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
  "RBM45 MUTATED" "RBM45 WILD-TYPE" "RBM45 WILD-TYPE" "RBM45 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"RBM45 WILD-TYPE" "RBM45 WILD-TYPE" "RBM45 WILD-TYPE" "RBM45 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"RBM45 WILD-TYPE" "RBM45 WILD-TYPE" "RBM45 WILD-TYPE"   "RBM45 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"RBM45 WILD-TYPE" "RBM45 WILD-TYPE" "RBM45 WILD-TYPE" "RBM45 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"RBM45 WILD-TYPE" "RBM45 WILD-TYPE" "RBM45 WILD-TYPE" "RBM45 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"RBM45 WILD-TYPE" "RBM45 WILD-TYPE" "RBM45 WILD-TYPE" "RBM45 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"RBM45 WILD-TYPE" "RBM45 WILD-TYPE" "RBM45 WILD-TYPE" "RBM45 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"RBM45 WILD-TYPE" "RBM45 WILD-TYPE" "RBM45 WILD-TYPE" "RBM45 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"RBM45 WILD-TYPE" "RBM45 WILD-TYPE" "RBM45 WILD-TYPE"   "RBM45 MUTATED" 
     TCGA-US-A77J 
"RBM45 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"RBM45 WILD-TYPE" "RBM45 WILD-TYPE"   "RBM45 MUTATED" "RBM45 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"RBM45 WILD-TYPE" "RBM45 WILD-TYPE" "RBM45 WILD-TYPE" "RBM45 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
  "RBM45 MUTATED"   "RBM45 MUTATED" "RBM45 WILD-TYPE" "RBM45 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"RBM45 WILD-TYPE" "RBM45 WILD-TYPE" "RBM45 WILD-TYPE" "RBM45 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"RBM45 WILD-TYPE" "RBM45 WILD-TYPE" "RBM45 WILD-TYPE" "RBM45 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"RBM45 WILD-TYPE" "RBM45 WILD-TYPE" "RBM45 WILD-TYPE" "RBM45 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"RBM45 WILD-TYPE" "RBM45 WILD-TYPE" "RBM45 WILD-TYPE" "RBM45 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"RBM45 WILD-TYPE" "RBM45 WILD-TYPE" "RBM45 WILD-TYPE" "RBM45 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
  "RBM45 MUTATED" "RBM45 WILD-TYPE" "RBM45 WILD-TYPE" "RBM45 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"RBM45 WILD-TYPE" "RBM45 WILD-TYPE" "RBM45 WILD-TYPE" "RBM45 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"RBM45 WILD-TYPE" "RBM45 WILD-TYPE" "RBM45 WILD-TYPE"   "RBM45 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"RBM45 WILD-TYPE" "RBM45 WILD-TYPE" "RBM45 WILD-TYPE" "RBM45 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"RBM45 WILD-TYPE" "RBM45 WILD-TYPE" "RBM45 WILD-TYPE" "RBM45 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"RBM45 WILD-TYPE" "RBM45 WILD-TYPE" "RBM45 WILD-TYPE" "RBM45 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"RBM45 WILD-TYPE" "RBM45 WILD-TYPE" "RBM45 WILD-TYPE" "RBM45 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"RBM45 WILD-TYPE" "RBM45 WILD-TYPE" "RBM45 WILD-TYPE" "RBM45 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"RBM45 WILD-TYPE" "RBM45 WILD-TYPE" "RBM45 WILD-TYPE"   "RBM45 MUTATED" 
     TCGA-US-A77J 
"RBM45 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"RBM45 WILD-TYPE" "RBM45 WILD-TYPE"   "RBM45 MUTATED" "RBM45 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"RBM45 WILD-TYPE" "RBM45 WILD-TYPE" "RBM45 WILD-TYPE" "RBM45 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
  "RBM45 MUTATED"   "RBM45 MUTATED" "RBM45 WILD-TYPE" "RBM45 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"RBM45 WILD-TYPE" "RBM45 WILD-TYPE" "RBM45 WILD-TYPE" "RBM45 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"RBM45 WILD-TYPE" "RBM45 WILD-TYPE" "RBM45 WILD-TYPE" "RBM45 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"RBM45 WILD-TYPE" "RBM45 WILD-TYPE" "RBM45 WILD-TYPE" "RBM45 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"RBM45 WILD-TYPE" "RBM45 WILD-TYPE" "RBM45 WILD-TYPE" "RBM45 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"RBM45 WILD-TYPE" "RBM45 WILD-TYPE" "RBM45 WILD-TYPE" "RBM45 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
  "RBM45 MUTATED" "RBM45 WILD-TYPE" "RBM45 WILD-TYPE" "RBM45 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"RBM45 WILD-TYPE" "RBM45 WILD-TYPE" "RBM45 WILD-TYPE" "RBM45 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"RBM45 WILD-TYPE" "RBM45 WILD-TYPE" "RBM45 WILD-TYPE"   "RBM45 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"RBM45 WILD-TYPE" "RBM45 WILD-TYPE" "RBM45 WILD-TYPE" "RBM45 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"RBM45 WILD-TYPE" "RBM45 WILD-TYPE" "RBM45 WILD-TYPE" "RBM45 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"RBM45 WILD-TYPE" "RBM45 WILD-TYPE" "RBM45 WILD-TYPE" "RBM45 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"RBM45 WILD-TYPE" "RBM45 WILD-TYPE" "RBM45 WILD-TYPE" "RBM45 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"RBM45 WILD-TYPE" "RBM45 WILD-TYPE" "RBM45 WILD-TYPE" "RBM45 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"RBM45 WILD-TYPE" "RBM45 WILD-TYPE" "RBM45 WILD-TYPE"   "RBM45 MUTATED" 
     TCGA-US-A77J 
"RBM45 WILD-TYPE" 
[1] "hr=" "1.3"
D242V2, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  RBM45 MUTATED          0        1         0         4         0        1
  RBM45 WILD-TYPE        1        3        11        47         2        2
D242V3, multiclass
                 vv
clus              T1+T2 T3+T4
  RBM45 MUTATED       1     5
  RBM45 WILD-TYPE     5    61
D242V4, multiclass
       clus
vv      RBM45 MUTATED RBM45 WILD-TYPE
  T1+T2             1               5
  T3+T4             5              61
D242V5, binary
                 cls
clus               0  1
  RBM45 MUTATED    2  4
  RBM45 WILD-TYPE 15 50
[1] "tbl2"
                 cls
clus              [,1] [,2]
  RBM45 MUTATED      2    4
  RBM45 WILD-TYPE   15   50
   clus
vv  RBM45 MUTATED RBM45 WILD-TYPE
  0             2              15
  1             4              50
                 vv
clus              M0 M1 MX
  RBM45 MUTATED    4  1  1
  RBM45 WILD-TYPE 35  2 29
D242V6, multiclass
    clus
vv   RBM45 MUTATED RBM45 WILD-TYPE
  M0             4              35
  M1             1               2
  MX             1              29
D242V7, binary
                 cls
clus               0  1
  RBM45 MUTATED    3  3
  RBM45 WILD-TYPE 33 33
[1] "tbl2"
                 cls
clus              [,1] [,2]
  RBM45 MUTATED      3    3
  RBM45 WILD-TYPE   33   33
        clus
vv       RBM45 MUTATED RBM45 WILD-TYPE
  FEMALE             3              33
  MALE               3              33
                 vv
clus              PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  RBM45 MUTATED                                     6
  RBM45 WILD-TYPE                                  59
                 vv
clus              PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  RBM45 MUTATED                                       0
  RBM45 WILD-TYPE                                     4
                 vv
clus              PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  RBM45 MUTATED                                                  0
  RBM45 WILD-TYPE                                                2
D242V8, multiclass
                                                  clus
vv                                                 RBM45 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                          6
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                        0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA             0
                                                  clus
vv                                                 RBM45 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                           59
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                          4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA               2
D242V9, continuous
[1] "Remove cluster labels:" "RBM45 MUTATED"         
clus
  RBM45 MUTATED RBM45 WILD-TYPE 
              2              20 
     TCGA-F2-6880      TCGA-FB-A4P5      TCGA-FB-A4P6      TCGA-FB-A78T 
"RBM45 WILD-TYPE" "RBM45 WILD-TYPE" "RBM45 WILD-TYPE" "RBM45 WILD-TYPE" 
     TCGA-FB-A7DR      TCGA-H6-8124      TCGA-H6-A45N      TCGA-H8-A6C1 
"RBM45 WILD-TYPE" "RBM45 WILD-TYPE" "RBM45 WILD-TYPE" "RBM45 WILD-TYPE" 
     TCGA-IB-7644      TCGA-IB-7649      TCGA-IB-7885      TCGA-IB-7886 
"RBM45 WILD-TYPE" "RBM45 WILD-TYPE" "RBM45 WILD-TYPE" "RBM45 WILD-TYPE" 
     TCGA-IB-7887      TCGA-IB-7891      TCGA-IB-8126      TCGA-IB-8127 
"RBM45 WILD-TYPE" "RBM45 WILD-TYPE" "RBM45 WILD-TYPE" "RBM45 WILD-TYPE" 
     TCGA-IB-A5SS      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"RBM45 WILD-TYPE" "RBM45 WILD-TYPE" "RBM45 WILD-TYPE" "RBM45 WILD-TYPE" 
D242V10, continuous
[1] "Remove cluster labels:" "RBM45 MUTATED"         
clus
  RBM45 MUTATED RBM45 WILD-TYPE 
              2              17 
     TCGA-FB-A4P5      TCGA-FB-A4P6      TCGA-FB-A78T      TCGA-FB-A7DR 
"RBM45 WILD-TYPE" "RBM45 WILD-TYPE" "RBM45 WILD-TYPE" "RBM45 WILD-TYPE" 
     TCGA-H6-8124      TCGA-H8-A6C1      TCGA-IB-7644      TCGA-IB-7649 
"RBM45 WILD-TYPE" "RBM45 WILD-TYPE" "RBM45 WILD-TYPE" "RBM45 WILD-TYPE" 
     TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7891      TCGA-IB-8126 
"RBM45 WILD-TYPE" "RBM45 WILD-TYPE" "RBM45 WILD-TYPE" "RBM45 WILD-TYPE" 
     TCGA-IB-8127      TCGA-IB-A5SS      TCGA-IB-A6UG      TCGA-LB-A7SX 
"RBM45 WILD-TYPE" "RBM45 WILD-TYPE" "RBM45 WILD-TYPE" "RBM45 WILD-TYPE" 
     TCGA-OE-A75W 
"RBM45 WILD-TYPE" 
                 vv
clus              R0 R1 RX
  RBM45 MUTATED    2  3  0
  RBM45 WILD-TYPE 40 21  2
D242V11, multiclass
    clus
vv   RBM45 MUTATED RBM45 WILD-TYPE
  R0             2              40
  R1             3              21
  RX             0               2
D242V12, continuous

Clustering(243) Variable = INF2 MUTATION ANALYSIS
D243V1, survival
                sevent
clus2             0  1
  INF2 MUTATED    4  4
  INF2 WILD-TYPE 36 25
  INF2 MUTATED INF2 WILD-TYPE 
             8             61 
  INF2 MUTATED INF2 WILD-TYPE 
             4             25 
$`INF2 MUTATED`
TCGA-H6-8124 TCGA-HZ-8002 TCGA-HZ-8005 TCGA-HZ-8317 TCGA-HZ-A49G TCGA-IB-7651 
       12.89         0.79         3.95         0.53         0.76        19.82 
TCGA-IB-7888 TCGA-IB-7897 
       43.79        15.98 

$`INF2 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P5 TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR 
        0.13        11.93        12.66         2.47         0.03         5.46 
TCGA-FZ-5920 TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7289 
        2.01        36.20        20.81         7.66        13.02         7.89 
TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 
        0.92         0.66         0.13         0.26        12.13        11.87 
TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8003 TCGA-HZ-8315 TCGA-HZ-8636 TCGA-HZ-8638 
        0.26         0.62         0.69         0.92         0.16         2.99 
TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7646 
        0.95         6.38         1.51        11.41        49.38         4.77 
TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 
       21.90        15.35        15.65        27.98         4.04         3.62 
TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-8126 TCGA-IB-8127 
       15.81        19.66        16.04         3.85         0.56        17.16 
TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG 
       10.82         9.86         7.20        15.12         0.26         1.35 
TCGA-LB-A7SX TCGA-OE-A75W TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E 
        4.18         3.62         8.12        13.68        16.80        14.14 
TCGA-US-A77J 
       18.67 

  INF2 MUTATED INF2 WILD-TYPE 
          0.53           0.03 
  INF2 MUTATED INF2 WILD-TYPE 
         43.79          49.38 
  INF2 MUTATED INF2 WILD-TYPE 
          8.42           7.66 
[1] "0.5 - 43.8 (8.4)" "0.0 - 49.4 (7.7)"
    TCGA-F2-6879     TCGA-F2-6880     TCGA-F2-7273     TCGA-F2-7276 
"INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" 
    TCGA-F2-A44G     TCGA-F2-A44H     TCGA-FB-A4P5     TCGA-FB-A4P6 
"INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" 
    TCGA-FB-A545     TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-FB-A7DR 
"INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" 
    TCGA-FZ-5920     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-H6-8124 
"INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE"   "INF2 MUTATED" 
    TCGA-H6-A45N     TCGA-H8-A6C1     TCGA-HZ-7289     TCGA-HZ-7918 
"INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" 
    TCGA-HZ-7919     TCGA-HZ-7922     TCGA-HZ-7923     TCGA-HZ-7924 
"INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" 
    TCGA-HZ-7925     TCGA-HZ-7926     TCGA-HZ-8001     TCGA-HZ-8002 
"INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE"   "INF2 MUTATED" 
    TCGA-HZ-8003     TCGA-HZ-8005     TCGA-HZ-8315     TCGA-HZ-8317 
"INF2 WILD-TYPE"   "INF2 MUTATED" "INF2 WILD-TYPE"   "INF2 MUTATED" 
    TCGA-HZ-8636     TCGA-HZ-8638     TCGA-HZ-A49G     TCGA-HZ-A49H 
"INF2 WILD-TYPE" "INF2 WILD-TYPE"   "INF2 MUTATED" "INF2 WILD-TYPE" 
    TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-IB-7644     TCGA-IB-7645 
"INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" 
    TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7651 
"INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE"   "INF2 MUTATED" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887 
"INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" 
    TCGA-IB-7888     TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891 
  "INF2 MUTATED" "INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" 
    TCGA-IB-7893     TCGA-IB-7897     TCGA-IB-8126     TCGA-IB-8127 
"INF2 WILD-TYPE"   "INF2 MUTATED" "INF2 WILD-TYPE" "INF2 WILD-TYPE" 
    TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS 
"INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" 
    TCGA-IB-A5ST     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
"INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" 
    TCGA-PZ-A5RE     TCGA-Q3-A5QY     TCGA-US-A779     TCGA-US-A77E 
"INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" 
    TCGA-US-A77J 
"INF2 WILD-TYPE" 
    TCGA-F2-6879     TCGA-F2-6880     TCGA-F2-7273     TCGA-F2-7276 
"INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" 
    TCGA-F2-A44G     TCGA-F2-A44H     TCGA-FB-A4P5     TCGA-FB-A4P6 
"INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" 
    TCGA-FB-A545     TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-FB-A7DR 
"INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" 
    TCGA-FZ-5920     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-H6-8124 
"INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE"   "INF2 MUTATED" 
    TCGA-H6-A45N     TCGA-H8-A6C1     TCGA-HZ-7289     TCGA-HZ-7918 
"INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" 
    TCGA-HZ-7919     TCGA-HZ-7922     TCGA-HZ-7923     TCGA-HZ-7924 
"INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" 
    TCGA-HZ-7925     TCGA-HZ-7926     TCGA-HZ-8001     TCGA-HZ-8002 
"INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE"   "INF2 MUTATED" 
    TCGA-HZ-8003     TCGA-HZ-8005     TCGA-HZ-8315     TCGA-HZ-8317 
"INF2 WILD-TYPE"   "INF2 MUTATED" "INF2 WILD-TYPE"   "INF2 MUTATED" 
    TCGA-HZ-8636     TCGA-HZ-8638     TCGA-HZ-A49G     TCGA-HZ-A49H 
"INF2 WILD-TYPE" "INF2 WILD-TYPE"   "INF2 MUTATED" "INF2 WILD-TYPE" 
    TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-IB-7644     TCGA-IB-7645 
"INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" 
    TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7651 
"INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE"   "INF2 MUTATED" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887 
"INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" 
    TCGA-IB-7888     TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891 
  "INF2 MUTATED" "INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" 
    TCGA-IB-7893     TCGA-IB-7897     TCGA-IB-8126     TCGA-IB-8127 
"INF2 WILD-TYPE"   "INF2 MUTATED" "INF2 WILD-TYPE" "INF2 WILD-TYPE" 
    TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS 
"INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" 
    TCGA-IB-A5ST     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
"INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" 
    TCGA-PZ-A5RE     TCGA-Q3-A5QY     TCGA-US-A779     TCGA-US-A77E 
"INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" 
    TCGA-US-A77J 
"INF2 WILD-TYPE" 
    TCGA-F2-6879     TCGA-F2-6880     TCGA-F2-7273     TCGA-F2-7276 
"INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" 
    TCGA-F2-A44G     TCGA-F2-A44H     TCGA-FB-A4P5     TCGA-FB-A4P6 
"INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" 
    TCGA-FB-A545     TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-FB-A7DR 
"INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" 
    TCGA-FZ-5920     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-H6-8124 
"INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE"   "INF2 MUTATED" 
    TCGA-H6-A45N     TCGA-H8-A6C1     TCGA-HZ-7289     TCGA-HZ-7918 
"INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" 
    TCGA-HZ-7919     TCGA-HZ-7922     TCGA-HZ-7923     TCGA-HZ-7924 
"INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" 
    TCGA-HZ-7925     TCGA-HZ-7926     TCGA-HZ-8001     TCGA-HZ-8002 
"INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE"   "INF2 MUTATED" 
    TCGA-HZ-8003     TCGA-HZ-8005     TCGA-HZ-8315     TCGA-HZ-8317 
"INF2 WILD-TYPE"   "INF2 MUTATED" "INF2 WILD-TYPE"   "INF2 MUTATED" 
    TCGA-HZ-8636     TCGA-HZ-8638     TCGA-HZ-A49G     TCGA-HZ-A49H 
"INF2 WILD-TYPE" "INF2 WILD-TYPE"   "INF2 MUTATED" "INF2 WILD-TYPE" 
    TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-IB-7644     TCGA-IB-7645 
"INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" 
    TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7651 
"INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE"   "INF2 MUTATED" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887 
"INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" 
    TCGA-IB-7888     TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891 
  "INF2 MUTATED" "INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" 
    TCGA-IB-7893     TCGA-IB-7897     TCGA-IB-8126     TCGA-IB-8127 
"INF2 WILD-TYPE"   "INF2 MUTATED" "INF2 WILD-TYPE" "INF2 WILD-TYPE" 
    TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS 
"INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" 
    TCGA-IB-A5ST     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
"INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" 
    TCGA-PZ-A5RE     TCGA-Q3-A5QY     TCGA-US-A779     TCGA-US-A77E 
"INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" 
    TCGA-US-A77J 
"INF2 WILD-TYPE" 
[1] "hr=" "1.2"
D243V2, continuous
                vv
clus             STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  INF2 MUTATED          0        0         1         7         0        0
  INF2 WILD-TYPE        1        4        10        44         2        3
D243V3, multiclass
                vv
clus             T1+T2 T3+T4
  INF2 MUTATED       1     7
  INF2 WILD-TYPE     5    59
D243V4, multiclass
       clus
vv      INF2 MUTATED INF2 WILD-TYPE
  T1+T2            1              5
  T3+T4            7             59
D243V5, binary
                cls
clus              0  1
  INF2 MUTATED    1  7
  INF2 WILD-TYPE 16 47
[1] "tbl2"
                cls
clus             [,1] [,2]
  INF2 MUTATED      1    7
  INF2 WILD-TYPE   16   47
   clus
vv  INF2 MUTATED INF2 WILD-TYPE
  0            1             16
  1            7             47
                vv
clus             M0 M1 MX
  INF2 MUTATED    4  0  4
  INF2 WILD-TYPE 35  3 26
D243V6, multiclass
    clus
vv   INF2 MUTATED INF2 WILD-TYPE
  M0            4             35
  M1            0              3
  MX            4             26
D243V7, binary
                cls
clus              0  1
  INF2 MUTATED    6  2
  INF2 WILD-TYPE 30 34
[1] "tbl2"
                cls
clus             [,1] [,2]
  INF2 MUTATED      6    2
  INF2 WILD-TYPE   30   34
        clus
vv       INF2 MUTATED INF2 WILD-TYPE
  FEMALE            6             30
  MALE              2             34
                vv
clus             PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  INF2 MUTATED                                     8
  INF2 WILD-TYPE                                  57
                vv
clus             PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  INF2 MUTATED                                       0
  INF2 WILD-TYPE                                     4
                vv
clus             PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  INF2 MUTATED                                                  0
  INF2 WILD-TYPE                                                2
D243V8, multiclass
                                                  clus
vv                                                 INF2 MUTATED INF2 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                         8             57
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                       0              4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA            0              2
D243V9, continuous
[1] "Remove cluster labels:" "INF2 MUTATED"          
clus
  INF2 MUTATED INF2 WILD-TYPE 
             2             20 
    TCGA-F2-6880     TCGA-FB-A4P5     TCGA-FB-A4P6     TCGA-FB-A5VM 
"INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" 
    TCGA-FB-A78T     TCGA-FB-A7DR     TCGA-H6-A45N     TCGA-H8-A6C1 
"INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" 
    TCGA-IB-7644     TCGA-IB-7649     TCGA-IB-7885     TCGA-IB-7886 
"INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" 
    TCGA-IB-7887     TCGA-IB-7891     TCGA-IB-8126     TCGA-IB-8127 
"INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" 
    TCGA-IB-A5SS     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
"INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" 
D243V10, continuous
[1] "Remove cluster labels:" "INF2 MUTATED"          
clus
  INF2 MUTATED INF2 WILD-TYPE 
             2             17 
    TCGA-FB-A4P5     TCGA-FB-A4P6     TCGA-FB-A5VM     TCGA-FB-A78T 
"INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" 
    TCGA-FB-A7DR     TCGA-H8-A6C1     TCGA-IB-7644     TCGA-IB-7649 
"INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" 
    TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7891     TCGA-IB-8126 
"INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" 
    TCGA-IB-8127     TCGA-IB-A5SS     TCGA-IB-A6UG     TCGA-LB-A7SX 
"INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" "INF2 WILD-TYPE" 
    TCGA-OE-A75W 
"INF2 WILD-TYPE" 
                vv
clus             R0 R1 RX
  INF2 MUTATED    5  3  0
  INF2 WILD-TYPE 37 21  2
D243V11, multiclass
    clus
vv   INF2 MUTATED INF2 WILD-TYPE
  R0            5             37
  R1            3             21
  RX            0              2
D243V12, continuous

Clustering(244) Variable = PARP3 MUTATION ANALYSIS
D244V1, survival
                 sevent
clus2              0  1
  PARP3 MUTATED    3  1
  PARP3 WILD-TYPE 37 28
  PARP3 MUTATED PARP3 WILD-TYPE 
              4              65 
  PARP3 MUTATED PARP3 WILD-TYPE 
              1              28 
$`PARP3 MUTATED`
TCGA-H6-8124 TCGA-HZ-8317 TCGA-HZ-A4BH TCGA-IB-7649 
       12.89         0.53         6.38        15.35 

$`PARP3 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P5 TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR 
        0.13        11.93        12.66         2.47         0.03         5.46 
TCGA-FZ-5920 TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7289 
        2.01        36.20        20.81         7.66        13.02         7.89 
TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 
        0.92         0.66         0.13         0.26        12.13        11.87 
TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 
        0.26         0.62         0.79         0.69         3.95         0.92 
TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BK TCGA-IB-7644 
        0.16         2.99         0.76         0.95         1.51        11.41 
TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7651 TCGA-IB-7652 TCGA-IB-7885 
       49.38         4.77        21.90        19.82        15.65        27.98 
TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 
        4.04         3.62        43.79        15.81        19.66        16.04 
TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP 
        3.85        15.98         0.56        17.16        10.82         9.86 
TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W 
        7.20        15.12         0.26         1.35         4.18         3.62 
TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
        8.12        13.68        16.80        14.14        18.67 

  PARP3 MUTATED PARP3 WILD-TYPE 
           0.53            0.03 
  PARP3 MUTATED PARP3 WILD-TYPE 
          15.35           49.38 
  PARP3 MUTATED PARP3 WILD-TYPE 
          9.635           7.660 
[1] "0.5 - 15.3 (9.6)" "0.0 - 49.4 (7.7)"
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"PARP3 WILD-TYPE" "PARP3 WILD-TYPE" "PARP3 WILD-TYPE" "PARP3 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"PARP3 WILD-TYPE" "PARP3 WILD-TYPE" "PARP3 WILD-TYPE" "PARP3 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"PARP3 WILD-TYPE" "PARP3 WILD-TYPE" "PARP3 WILD-TYPE" "PARP3 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"PARP3 WILD-TYPE" "PARP3 WILD-TYPE" "PARP3 WILD-TYPE"   "PARP3 MUTATED" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"PARP3 WILD-TYPE" "PARP3 WILD-TYPE" "PARP3 WILD-TYPE" "PARP3 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"PARP3 WILD-TYPE" "PARP3 WILD-TYPE" "PARP3 WILD-TYPE" "PARP3 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"PARP3 WILD-TYPE" "PARP3 WILD-TYPE" "PARP3 WILD-TYPE" "PARP3 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"PARP3 WILD-TYPE" "PARP3 WILD-TYPE" "PARP3 WILD-TYPE"   "PARP3 MUTATED" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"PARP3 WILD-TYPE" "PARP3 WILD-TYPE" "PARP3 WILD-TYPE" "PARP3 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
  "PARP3 MUTATED" "PARP3 WILD-TYPE" "PARP3 WILD-TYPE" "PARP3 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"PARP3 WILD-TYPE" "PARP3 WILD-TYPE"   "PARP3 MUTATED" "PARP3 WILD-TYPE" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"PARP3 WILD-TYPE" "PARP3 WILD-TYPE" "PARP3 WILD-TYPE" "PARP3 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"PARP3 WILD-TYPE" "PARP3 WILD-TYPE" "PARP3 WILD-TYPE" "PARP3 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"PARP3 WILD-TYPE" "PARP3 WILD-TYPE" "PARP3 WILD-TYPE" "PARP3 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"PARP3 WILD-TYPE" "PARP3 WILD-TYPE" "PARP3 WILD-TYPE" "PARP3 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"PARP3 WILD-TYPE" "PARP3 WILD-TYPE" "PARP3 WILD-TYPE" "PARP3 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"PARP3 WILD-TYPE" "PARP3 WILD-TYPE" "PARP3 WILD-TYPE" "PARP3 WILD-TYPE" 
     TCGA-US-A77J 
"PARP3 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"PARP3 WILD-TYPE" "PARP3 WILD-TYPE" "PARP3 WILD-TYPE" "PARP3 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"PARP3 WILD-TYPE" "PARP3 WILD-TYPE" "PARP3 WILD-TYPE" "PARP3 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"PARP3 WILD-TYPE" "PARP3 WILD-TYPE" "PARP3 WILD-TYPE" "PARP3 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"PARP3 WILD-TYPE" "PARP3 WILD-TYPE" "PARP3 WILD-TYPE"   "PARP3 MUTATED" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"PARP3 WILD-TYPE" "PARP3 WILD-TYPE" "PARP3 WILD-TYPE" "PARP3 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"PARP3 WILD-TYPE" "PARP3 WILD-TYPE" "PARP3 WILD-TYPE" "PARP3 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"PARP3 WILD-TYPE" "PARP3 WILD-TYPE" "PARP3 WILD-TYPE" "PARP3 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"PARP3 WILD-TYPE" "PARP3 WILD-TYPE" "PARP3 WILD-TYPE"   "PARP3 MUTATED" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"PARP3 WILD-TYPE" "PARP3 WILD-TYPE" "PARP3 WILD-TYPE" "PARP3 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
  "PARP3 MUTATED" "PARP3 WILD-TYPE" "PARP3 WILD-TYPE" "PARP3 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"PARP3 WILD-TYPE" "PARP3 WILD-TYPE"   "PARP3 MUTATED" "PARP3 WILD-TYPE" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"PARP3 WILD-TYPE" "PARP3 WILD-TYPE" "PARP3 WILD-TYPE" "PARP3 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"PARP3 WILD-TYPE" "PARP3 WILD-TYPE" "PARP3 WILD-TYPE" "PARP3 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"PARP3 WILD-TYPE" "PARP3 WILD-TYPE" "PARP3 WILD-TYPE" "PARP3 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"PARP3 WILD-TYPE" "PARP3 WILD-TYPE" "PARP3 WILD-TYPE" "PARP3 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"PARP3 WILD-TYPE" "PARP3 WILD-TYPE" "PARP3 WILD-TYPE" "PARP3 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"PARP3 WILD-TYPE" "PARP3 WILD-TYPE" "PARP3 WILD-TYPE" "PARP3 WILD-TYPE" 
     TCGA-US-A77J 
"PARP3 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"PARP3 WILD-TYPE" "PARP3 WILD-TYPE" "PARP3 WILD-TYPE" "PARP3 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"PARP3 WILD-TYPE" "PARP3 WILD-TYPE" "PARP3 WILD-TYPE" "PARP3 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"PARP3 WILD-TYPE" "PARP3 WILD-TYPE" "PARP3 WILD-TYPE" "PARP3 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"PARP3 WILD-TYPE" "PARP3 WILD-TYPE" "PARP3 WILD-TYPE"   "PARP3 MUTATED" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"PARP3 WILD-TYPE" "PARP3 WILD-TYPE" "PARP3 WILD-TYPE" "PARP3 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"PARP3 WILD-TYPE" "PARP3 WILD-TYPE" "PARP3 WILD-TYPE" "PARP3 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"PARP3 WILD-TYPE" "PARP3 WILD-TYPE" "PARP3 WILD-TYPE" "PARP3 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"PARP3 WILD-TYPE" "PARP3 WILD-TYPE" "PARP3 WILD-TYPE"   "PARP3 MUTATED" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"PARP3 WILD-TYPE" "PARP3 WILD-TYPE" "PARP3 WILD-TYPE" "PARP3 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
  "PARP3 MUTATED" "PARP3 WILD-TYPE" "PARP3 WILD-TYPE" "PARP3 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"PARP3 WILD-TYPE" "PARP3 WILD-TYPE"   "PARP3 MUTATED" "PARP3 WILD-TYPE" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"PARP3 WILD-TYPE" "PARP3 WILD-TYPE" "PARP3 WILD-TYPE" "PARP3 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"PARP3 WILD-TYPE" "PARP3 WILD-TYPE" "PARP3 WILD-TYPE" "PARP3 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"PARP3 WILD-TYPE" "PARP3 WILD-TYPE" "PARP3 WILD-TYPE" "PARP3 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"PARP3 WILD-TYPE" "PARP3 WILD-TYPE" "PARP3 WILD-TYPE" "PARP3 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"PARP3 WILD-TYPE" "PARP3 WILD-TYPE" "PARP3 WILD-TYPE" "PARP3 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"PARP3 WILD-TYPE" "PARP3 WILD-TYPE" "PARP3 WILD-TYPE" "PARP3 WILD-TYPE" 
     TCGA-US-A77J 
"PARP3 WILD-TYPE" 
[1] "hr=" "1.2"
D244V2, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  PARP3 MUTATED          0        0         0         4         0        0
  PARP3 WILD-TYPE        1        4        11        47         2        3
D244V3, multiclass
                 vv
clus              T1+T2 T3+T4
  PARP3 MUTATED       0     4
  PARP3 WILD-TYPE     6    62
D244V4, multiclass
       clus
vv      PARP3 MUTATED PARP3 WILD-TYPE
  T1+T2             0               6
  T3+T4             4              62
D244V5, binary
                 cls
clus               0  1
  PARP3 MUTATED    0  4
  PARP3 WILD-TYPE 17 50
[1] "tbl2"
                 cls
clus              [,1] [,2]
  PARP3 MUTATED      0    4
  PARP3 WILD-TYPE   17   50
   clus
vv  PARP3 MUTATED PARP3 WILD-TYPE
  0             0              17
  1             4              50
                 vv
clus              M0 M1 MX
  PARP3 MUTATED    2  0  2
  PARP3 WILD-TYPE 37  3 28
D244V6, multiclass
    clus
vv   PARP3 MUTATED PARP3 WILD-TYPE
  M0             2              37
  M1             0               3
  MX             2              28
D244V7, binary
                 cls
clus               0  1
  PARP3 MUTATED    3  1
  PARP3 WILD-TYPE 33 35
[1] "tbl2"
                 cls
clus              [,1] [,2]
  PARP3 MUTATED      3    1
  PARP3 WILD-TYPE   33   35
        clus
vv       PARP3 MUTATED PARP3 WILD-TYPE
  FEMALE             3              33
  MALE               1              35
                 vv
clus              PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  PARP3 MUTATED                                     4
  PARP3 WILD-TYPE                                  61
                 vv
clus              PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  PARP3 MUTATED                                       0
  PARP3 WILD-TYPE                                     4
                 vv
clus              PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  PARP3 MUTATED                                                  0
  PARP3 WILD-TYPE                                                2
D244V8, multiclass
                                                  clus
vv                                                 PARP3 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                          4
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                        0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA             0
                                                  clus
vv                                                 PARP3 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                           61
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                          4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA               2
D244V9, continuous
[1] "Remove cluster labels:" "PARP3 MUTATED"         
clus
  PARP3 MUTATED PARP3 WILD-TYPE 
              2              20 
     TCGA-F2-6880      TCGA-FB-A4P5      TCGA-FB-A4P6      TCGA-FB-A5VM 
"PARP3 WILD-TYPE" "PARP3 WILD-TYPE" "PARP3 WILD-TYPE" "PARP3 WILD-TYPE" 
     TCGA-FB-A78T      TCGA-FB-A7DR      TCGA-H6-A45N      TCGA-H8-A6C1 
"PARP3 WILD-TYPE" "PARP3 WILD-TYPE" "PARP3 WILD-TYPE" "PARP3 WILD-TYPE" 
     TCGA-IB-7644      TCGA-IB-7651      TCGA-IB-7885      TCGA-IB-7886 
"PARP3 WILD-TYPE" "PARP3 WILD-TYPE" "PARP3 WILD-TYPE" "PARP3 WILD-TYPE" 
     TCGA-IB-7887      TCGA-IB-7891      TCGA-IB-8126      TCGA-IB-8127 
"PARP3 WILD-TYPE" "PARP3 WILD-TYPE" "PARP3 WILD-TYPE" "PARP3 WILD-TYPE" 
     TCGA-IB-A5SS      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"PARP3 WILD-TYPE" "PARP3 WILD-TYPE" "PARP3 WILD-TYPE" "PARP3 WILD-TYPE" 
D244V10, continuous
[1] "Remove cluster labels:" "PARP3 MUTATED"         
clus
  PARP3 MUTATED PARP3 WILD-TYPE 
              2              17 
     TCGA-FB-A4P5      TCGA-FB-A4P6      TCGA-FB-A5VM      TCGA-FB-A78T 
"PARP3 WILD-TYPE" "PARP3 WILD-TYPE" "PARP3 WILD-TYPE" "PARP3 WILD-TYPE" 
     TCGA-FB-A7DR      TCGA-H8-A6C1      TCGA-IB-7644      TCGA-IB-7651 
"PARP3 WILD-TYPE" "PARP3 WILD-TYPE" "PARP3 WILD-TYPE" "PARP3 WILD-TYPE" 
     TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7891      TCGA-IB-8126 
"PARP3 WILD-TYPE" "PARP3 WILD-TYPE" "PARP3 WILD-TYPE" "PARP3 WILD-TYPE" 
     TCGA-IB-8127      TCGA-IB-A5SS      TCGA-IB-A6UG      TCGA-LB-A7SX 
"PARP3 WILD-TYPE" "PARP3 WILD-TYPE" "PARP3 WILD-TYPE" "PARP3 WILD-TYPE" 
     TCGA-OE-A75W 
"PARP3 WILD-TYPE" 
                 vv
clus              R0 R1 RX
  PARP3 MUTATED    1  3  0
  PARP3 WILD-TYPE 41 21  2
D244V11, multiclass
    clus
vv   PARP3 MUTATED PARP3 WILD-TYPE
  R0             1              41
  R1             3              21
  RX             0               2
D244V12, continuous

Clustering(245) Variable = CDO1 MUTATION ANALYSIS
D245V1, survival
                sevent
clus2             0  1
  CDO1 MUTATED    4  1
  CDO1 WILD-TYPE 36 28
  CDO1 MUTATED CDO1 WILD-TYPE 
             5             64 
  CDO1 MUTATED CDO1 WILD-TYPE 
             1             28 
$`CDO1 MUTATED`
TCGA-F2-A44H TCGA-HZ-7919 TCGA-HZ-8317 TCGA-Q3-A5QY TCGA-US-A77J 
       19.27         0.66         0.53        13.68        18.67 

$`CDO1 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-FB-A4P5 
       10.98         9.70        11.84         7.10         5.03         0.13 
TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR TCGA-FZ-5920 
       11.93        12.66         2.47         0.03         5.46         2.01 
TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7289 
       36.20        20.81        12.89         7.66        13.02         7.89 
TCGA-HZ-7918 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 
        0.92         0.13         0.26        12.13        11.87         0.26 
TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8636 
        0.62         0.79         0.69         3.95         0.92         0.16 
TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 
        2.99         0.76         0.95         6.38         1.51        11.41 
TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7651 TCGA-IB-7652 
       49.38         4.77        21.90        15.35        19.82        15.65 
TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 
       27.98         4.04         3.62        43.79        15.81        19.66 
TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO 
       16.04         3.85        15.98         0.56        17.16        10.82 
TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX 
        9.86         7.20        15.12         0.26         1.35         4.18 
TCGA-OE-A75W TCGA-PZ-A5RE TCGA-US-A779 TCGA-US-A77E 
        3.62         8.12        16.80        14.14 

  CDO1 MUTATED CDO1 WILD-TYPE 
          0.53           0.03 
  CDO1 MUTATED CDO1 WILD-TYPE 
         19.27          49.38 
  CDO1 MUTATED CDO1 WILD-TYPE 
         13.68           7.43 
[1] "0.5 - 19.3 (13.7)" "0.0 - 49.4 (7.4)" 
    TCGA-F2-6879     TCGA-F2-6880     TCGA-F2-7273     TCGA-F2-7276 
"CDO1 WILD-TYPE" "CDO1 WILD-TYPE" "CDO1 WILD-TYPE" "CDO1 WILD-TYPE" 
    TCGA-F2-A44G     TCGA-F2-A44H     TCGA-FB-A4P5     TCGA-FB-A4P6 
"CDO1 WILD-TYPE"   "CDO1 MUTATED" "CDO1 WILD-TYPE" "CDO1 WILD-TYPE" 
    TCGA-FB-A545     TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-FB-A7DR 
"CDO1 WILD-TYPE" "CDO1 WILD-TYPE" "CDO1 WILD-TYPE" "CDO1 WILD-TYPE" 
    TCGA-FZ-5920     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-H6-8124 
"CDO1 WILD-TYPE" "CDO1 WILD-TYPE" "CDO1 WILD-TYPE" "CDO1 WILD-TYPE" 
    TCGA-H6-A45N     TCGA-H8-A6C1     TCGA-HZ-7289     TCGA-HZ-7918 
"CDO1 WILD-TYPE" "CDO1 WILD-TYPE" "CDO1 WILD-TYPE" "CDO1 WILD-TYPE" 
    TCGA-HZ-7919     TCGA-HZ-7922     TCGA-HZ-7923     TCGA-HZ-7924 
  "CDO1 MUTATED" "CDO1 WILD-TYPE" "CDO1 WILD-TYPE" "CDO1 WILD-TYPE" 
    TCGA-HZ-7925     TCGA-HZ-7926     TCGA-HZ-8001     TCGA-HZ-8002 
"CDO1 WILD-TYPE" "CDO1 WILD-TYPE" "CDO1 WILD-TYPE" "CDO1 WILD-TYPE" 
    TCGA-HZ-8003     TCGA-HZ-8005     TCGA-HZ-8315     TCGA-HZ-8317 
"CDO1 WILD-TYPE" "CDO1 WILD-TYPE" "CDO1 WILD-TYPE"   "CDO1 MUTATED" 
    TCGA-HZ-8636     TCGA-HZ-8638     TCGA-HZ-A49G     TCGA-HZ-A49H 
"CDO1 WILD-TYPE" "CDO1 WILD-TYPE" "CDO1 WILD-TYPE" "CDO1 WILD-TYPE" 
    TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-IB-7644     TCGA-IB-7645 
"CDO1 WILD-TYPE" "CDO1 WILD-TYPE" "CDO1 WILD-TYPE" "CDO1 WILD-TYPE" 
    TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7651 
"CDO1 WILD-TYPE" "CDO1 WILD-TYPE" "CDO1 WILD-TYPE" "CDO1 WILD-TYPE" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887 
"CDO1 WILD-TYPE" "CDO1 WILD-TYPE" "CDO1 WILD-TYPE" "CDO1 WILD-TYPE" 
    TCGA-IB-7888     TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891 
"CDO1 WILD-TYPE" "CDO1 WILD-TYPE" "CDO1 WILD-TYPE" "CDO1 WILD-TYPE" 
    TCGA-IB-7893     TCGA-IB-7897     TCGA-IB-8126     TCGA-IB-8127 
"CDO1 WILD-TYPE" "CDO1 WILD-TYPE" "CDO1 WILD-TYPE" "CDO1 WILD-TYPE" 
    TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS 
"CDO1 WILD-TYPE" "CDO1 WILD-TYPE" "CDO1 WILD-TYPE" "CDO1 WILD-TYPE" 
    TCGA-IB-A5ST     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
"CDO1 WILD-TYPE" "CDO1 WILD-TYPE" "CDO1 WILD-TYPE" "CDO1 WILD-TYPE" 
    TCGA-PZ-A5RE     TCGA-Q3-A5QY     TCGA-US-A779     TCGA-US-A77E 
"CDO1 WILD-TYPE"   "CDO1 MUTATED" "CDO1 WILD-TYPE" "CDO1 WILD-TYPE" 
    TCGA-US-A77J 
  "CDO1 MUTATED" 
    TCGA-F2-6879     TCGA-F2-6880     TCGA-F2-7273     TCGA-F2-7276 
"CDO1 WILD-TYPE" "CDO1 WILD-TYPE" "CDO1 WILD-TYPE" "CDO1 WILD-TYPE" 
    TCGA-F2-A44G     TCGA-F2-A44H     TCGA-FB-A4P5     TCGA-FB-A4P6 
"CDO1 WILD-TYPE"   "CDO1 MUTATED" "CDO1 WILD-TYPE" "CDO1 WILD-TYPE" 
    TCGA-FB-A545     TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-FB-A7DR 
"CDO1 WILD-TYPE" "CDO1 WILD-TYPE" "CDO1 WILD-TYPE" "CDO1 WILD-TYPE" 
    TCGA-FZ-5920     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-H6-8124 
"CDO1 WILD-TYPE" "CDO1 WILD-TYPE" "CDO1 WILD-TYPE" "CDO1 WILD-TYPE" 
    TCGA-H6-A45N     TCGA-H8-A6C1     TCGA-HZ-7289     TCGA-HZ-7918 
"CDO1 WILD-TYPE" "CDO1 WILD-TYPE" "CDO1 WILD-TYPE" "CDO1 WILD-TYPE" 
    TCGA-HZ-7919     TCGA-HZ-7922     TCGA-HZ-7923     TCGA-HZ-7924 
  "CDO1 MUTATED" "CDO1 WILD-TYPE" "CDO1 WILD-TYPE" "CDO1 WILD-TYPE" 
    TCGA-HZ-7925     TCGA-HZ-7926     TCGA-HZ-8001     TCGA-HZ-8002 
"CDO1 WILD-TYPE" "CDO1 WILD-TYPE" "CDO1 WILD-TYPE" "CDO1 WILD-TYPE" 
    TCGA-HZ-8003     TCGA-HZ-8005     TCGA-HZ-8315     TCGA-HZ-8317 
"CDO1 WILD-TYPE" "CDO1 WILD-TYPE" "CDO1 WILD-TYPE"   "CDO1 MUTATED" 
    TCGA-HZ-8636     TCGA-HZ-8638     TCGA-HZ-A49G     TCGA-HZ-A49H 
"CDO1 WILD-TYPE" "CDO1 WILD-TYPE" "CDO1 WILD-TYPE" "CDO1 WILD-TYPE" 
    TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-IB-7644     TCGA-IB-7645 
"CDO1 WILD-TYPE" "CDO1 WILD-TYPE" "CDO1 WILD-TYPE" "CDO1 WILD-TYPE" 
    TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7651 
"CDO1 WILD-TYPE" "CDO1 WILD-TYPE" "CDO1 WILD-TYPE" "CDO1 WILD-TYPE" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887 
"CDO1 WILD-TYPE" "CDO1 WILD-TYPE" "CDO1 WILD-TYPE" "CDO1 WILD-TYPE" 
    TCGA-IB-7888     TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891 
"CDO1 WILD-TYPE" "CDO1 WILD-TYPE" "CDO1 WILD-TYPE" "CDO1 WILD-TYPE" 
    TCGA-IB-7893     TCGA-IB-7897     TCGA-IB-8126     TCGA-IB-8127 
"CDO1 WILD-TYPE" "CDO1 WILD-TYPE" "CDO1 WILD-TYPE" "CDO1 WILD-TYPE" 
    TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS 
"CDO1 WILD-TYPE" "CDO1 WILD-TYPE" "CDO1 WILD-TYPE" "CDO1 WILD-TYPE" 
    TCGA-IB-A5ST     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
"CDO1 WILD-TYPE" "CDO1 WILD-TYPE" "CDO1 WILD-TYPE" "CDO1 WILD-TYPE" 
    TCGA-PZ-A5RE     TCGA-Q3-A5QY     TCGA-US-A779     TCGA-US-A77E 
"CDO1 WILD-TYPE"   "CDO1 MUTATED" "CDO1 WILD-TYPE" "CDO1 WILD-TYPE" 
    TCGA-US-A77J 
  "CDO1 MUTATED" 
    TCGA-F2-6879     TCGA-F2-6880     TCGA-F2-7273     TCGA-F2-7276 
"CDO1 WILD-TYPE" "CDO1 WILD-TYPE" "CDO1 WILD-TYPE" "CDO1 WILD-TYPE" 
    TCGA-F2-A44G     TCGA-F2-A44H     TCGA-FB-A4P5     TCGA-FB-A4P6 
"CDO1 WILD-TYPE"   "CDO1 MUTATED" "CDO1 WILD-TYPE" "CDO1 WILD-TYPE" 
    TCGA-FB-A545     TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-FB-A7DR 
"CDO1 WILD-TYPE" "CDO1 WILD-TYPE" "CDO1 WILD-TYPE" "CDO1 WILD-TYPE" 
    TCGA-FZ-5920     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-H6-8124 
"CDO1 WILD-TYPE" "CDO1 WILD-TYPE" "CDO1 WILD-TYPE" "CDO1 WILD-TYPE" 
    TCGA-H6-A45N     TCGA-H8-A6C1     TCGA-HZ-7289     TCGA-HZ-7918 
"CDO1 WILD-TYPE" "CDO1 WILD-TYPE" "CDO1 WILD-TYPE" "CDO1 WILD-TYPE" 
    TCGA-HZ-7919     TCGA-HZ-7922     TCGA-HZ-7923     TCGA-HZ-7924 
  "CDO1 MUTATED" "CDO1 WILD-TYPE" "CDO1 WILD-TYPE" "CDO1 WILD-TYPE" 
    TCGA-HZ-7925     TCGA-HZ-7926     TCGA-HZ-8001     TCGA-HZ-8002 
"CDO1 WILD-TYPE" "CDO1 WILD-TYPE" "CDO1 WILD-TYPE" "CDO1 WILD-TYPE" 
    TCGA-HZ-8003     TCGA-HZ-8005     TCGA-HZ-8315     TCGA-HZ-8317 
"CDO1 WILD-TYPE" "CDO1 WILD-TYPE" "CDO1 WILD-TYPE"   "CDO1 MUTATED" 
    TCGA-HZ-8636     TCGA-HZ-8638     TCGA-HZ-A49G     TCGA-HZ-A49H 
"CDO1 WILD-TYPE" "CDO1 WILD-TYPE" "CDO1 WILD-TYPE" "CDO1 WILD-TYPE" 
    TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-IB-7644     TCGA-IB-7645 
"CDO1 WILD-TYPE" "CDO1 WILD-TYPE" "CDO1 WILD-TYPE" "CDO1 WILD-TYPE" 
    TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7651 
"CDO1 WILD-TYPE" "CDO1 WILD-TYPE" "CDO1 WILD-TYPE" "CDO1 WILD-TYPE" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887 
"CDO1 WILD-TYPE" "CDO1 WILD-TYPE" "CDO1 WILD-TYPE" "CDO1 WILD-TYPE" 
    TCGA-IB-7888     TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891 
"CDO1 WILD-TYPE" "CDO1 WILD-TYPE" "CDO1 WILD-TYPE" "CDO1 WILD-TYPE" 
    TCGA-IB-7893     TCGA-IB-7897     TCGA-IB-8126     TCGA-IB-8127 
"CDO1 WILD-TYPE" "CDO1 WILD-TYPE" "CDO1 WILD-TYPE" "CDO1 WILD-TYPE" 
    TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS 
"CDO1 WILD-TYPE" "CDO1 WILD-TYPE" "CDO1 WILD-TYPE" "CDO1 WILD-TYPE" 
    TCGA-IB-A5ST     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
"CDO1 WILD-TYPE" "CDO1 WILD-TYPE" "CDO1 WILD-TYPE" "CDO1 WILD-TYPE" 
    TCGA-PZ-A5RE     TCGA-Q3-A5QY     TCGA-US-A779     TCGA-US-A77E 
"CDO1 WILD-TYPE"   "CDO1 MUTATED" "CDO1 WILD-TYPE" "CDO1 WILD-TYPE" 
    TCGA-US-A77J 
  "CDO1 MUTATED" 
[1] "hr=" "2.3"
D245V2, continuous
                vv
clus             STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  CDO1 MUTATED          0        0         1         4         0        0
  CDO1 WILD-TYPE        1        4        10        47         2        3
D245V3, multiclass
                vv
clus             T1+T2 T3+T4
  CDO1 MUTATED       0     5
  CDO1 WILD-TYPE     6    61
D245V4, multiclass
       clus
vv      CDO1 MUTATED CDO1 WILD-TYPE
  T1+T2            0              6
  T3+T4            5             61
D245V5, binary
                cls
clus              0  1
  CDO1 MUTATED    1  4
  CDO1 WILD-TYPE 16 50
[1] "tbl2"
                cls
clus             [,1] [,2]
  CDO1 MUTATED      1    4
  CDO1 WILD-TYPE   16   50
   clus
vv  CDO1 MUTATED CDO1 WILD-TYPE
  0            1             16
  1            4             50
                vv
clus             M0 M1 MX
  CDO1 MUTATED    2  0  3
  CDO1 WILD-TYPE 37  3 27
D245V6, multiclass
    clus
vv   CDO1 MUTATED CDO1 WILD-TYPE
  M0            2             37
  M1            0              3
  MX            3             27
D245V7, binary
                cls
clus              0  1
  CDO1 MUTATED    3  2
  CDO1 WILD-TYPE 33 34
[1] "tbl2"
                cls
clus             [,1] [,2]
  CDO1 MUTATED      3    2
  CDO1 WILD-TYPE   33   34
        clus
vv       CDO1 MUTATED CDO1 WILD-TYPE
  FEMALE            3             33
  MALE              2             34
                vv
clus             PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  CDO1 MUTATED                                     5
  CDO1 WILD-TYPE                                  60
                vv
clus             PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  CDO1 MUTATED                                       0
  CDO1 WILD-TYPE                                     4
                vv
clus             PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  CDO1 MUTATED                                                  0
  CDO1 WILD-TYPE                                                2
D245V8, multiclass
                                                  clus
vv                                                 CDO1 MUTATED CDO1 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                         5             60
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                       0              4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA            0              2
D245V9, continuous
D245V10, continuous
                vv
clus             R0 R1 RX
  CDO1 MUTATED    3  2  0
  CDO1 WILD-TYPE 39 22  2
D245V11, multiclass
    clus
vv   CDO1 MUTATED CDO1 WILD-TYPE
  R0            3             39
  R1            2             22
  RX            0              2
D245V12, continuous

Clustering(246) Variable = FAM98A MUTATION ANALYSIS
D246V1, survival
                  sevent
clus2               0  1
  FAM98A MUTATED    1  2
  FAM98A WILD-TYPE 39 27
  FAM98A MUTATED FAM98A WILD-TYPE 
               3               66 
  FAM98A MUTATED FAM98A WILD-TYPE 
               2               27 
$`FAM98A MUTATED`
TCGA-H6-8124 TCGA-IB-7645 TCGA-IB-7887 
       12.89        49.38         3.62 

$`FAM98A WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P5 TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR 
        0.13        11.93        12.66         2.47         0.03         5.46 
TCGA-FZ-5920 TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7289 
        2.01        36.20        20.81         7.66        13.02         7.89 
TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 
        0.92         0.66         0.13         0.26        12.13        11.87 
TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 
        0.26         0.62         0.79         0.69         3.95         0.92 
TCGA-HZ-8317 TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH 
        0.53         0.16         2.99         0.76         0.95         6.38 
TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7651 
        1.51        11.41         4.77        21.90        15.35        19.82 
TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 
       15.65        27.98         4.04        43.79        15.81        19.66 
TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO 
       16.04         3.85        15.98         0.56        17.16        10.82 
TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX 
        9.86         7.20        15.12         0.26         1.35         4.18 
TCGA-OE-A75W TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
        3.62         8.12        13.68        16.80        14.14        18.67 

  FAM98A MUTATED FAM98A WILD-TYPE 
            3.62             0.03 
  FAM98A MUTATED FAM98A WILD-TYPE 
           49.38            43.79 
  FAM98A MUTATED FAM98A WILD-TYPE 
           12.89             7.43 
[1] "3.6 - 49.4 (12.9)" "0.0 - 43.8 (7.4)" 
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
"FAM98A WILD-TYPE" "FAM98A WILD-TYPE" "FAM98A WILD-TYPE" "FAM98A WILD-TYPE" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"FAM98A WILD-TYPE" "FAM98A WILD-TYPE" "FAM98A WILD-TYPE" "FAM98A WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
"FAM98A WILD-TYPE" "FAM98A WILD-TYPE" "FAM98A WILD-TYPE" "FAM98A WILD-TYPE" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"FAM98A WILD-TYPE" "FAM98A WILD-TYPE" "FAM98A WILD-TYPE"   "FAM98A MUTATED" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
"FAM98A WILD-TYPE" "FAM98A WILD-TYPE" "FAM98A WILD-TYPE" "FAM98A WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
"FAM98A WILD-TYPE" "FAM98A WILD-TYPE" "FAM98A WILD-TYPE" "FAM98A WILD-TYPE" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"FAM98A WILD-TYPE" "FAM98A WILD-TYPE" "FAM98A WILD-TYPE" "FAM98A WILD-TYPE" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
"FAM98A WILD-TYPE" "FAM98A WILD-TYPE" "FAM98A WILD-TYPE" "FAM98A WILD-TYPE" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
"FAM98A WILD-TYPE" "FAM98A WILD-TYPE" "FAM98A WILD-TYPE" "FAM98A WILD-TYPE" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
"FAM98A WILD-TYPE" "FAM98A WILD-TYPE" "FAM98A WILD-TYPE"   "FAM98A MUTATED" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
"FAM98A WILD-TYPE" "FAM98A WILD-TYPE" "FAM98A WILD-TYPE" "FAM98A WILD-TYPE" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
"FAM98A WILD-TYPE" "FAM98A WILD-TYPE" "FAM98A WILD-TYPE"   "FAM98A MUTATED" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
"FAM98A WILD-TYPE" "FAM98A WILD-TYPE" "FAM98A WILD-TYPE" "FAM98A WILD-TYPE" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
"FAM98A WILD-TYPE" "FAM98A WILD-TYPE" "FAM98A WILD-TYPE" "FAM98A WILD-TYPE" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"FAM98A WILD-TYPE" "FAM98A WILD-TYPE" "FAM98A WILD-TYPE" "FAM98A WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"FAM98A WILD-TYPE" "FAM98A WILD-TYPE" "FAM98A WILD-TYPE" "FAM98A WILD-TYPE" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
"FAM98A WILD-TYPE" "FAM98A WILD-TYPE" "FAM98A WILD-TYPE" "FAM98A WILD-TYPE" 
      TCGA-US-A77J 
"FAM98A WILD-TYPE" 
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
"FAM98A WILD-TYPE" "FAM98A WILD-TYPE" "FAM98A WILD-TYPE" "FAM98A WILD-TYPE" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"FAM98A WILD-TYPE" "FAM98A WILD-TYPE" "FAM98A WILD-TYPE" "FAM98A WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
"FAM98A WILD-TYPE" "FAM98A WILD-TYPE" "FAM98A WILD-TYPE" "FAM98A WILD-TYPE" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"FAM98A WILD-TYPE" "FAM98A WILD-TYPE" "FAM98A WILD-TYPE"   "FAM98A MUTATED" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
"FAM98A WILD-TYPE" "FAM98A WILD-TYPE" "FAM98A WILD-TYPE" "FAM98A WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
"FAM98A WILD-TYPE" "FAM98A WILD-TYPE" "FAM98A WILD-TYPE" "FAM98A WILD-TYPE" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"FAM98A WILD-TYPE" "FAM98A WILD-TYPE" "FAM98A WILD-TYPE" "FAM98A WILD-TYPE" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
"FAM98A WILD-TYPE" "FAM98A WILD-TYPE" "FAM98A WILD-TYPE" "FAM98A WILD-TYPE" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
"FAM98A WILD-TYPE" "FAM98A WILD-TYPE" "FAM98A WILD-TYPE" "FAM98A WILD-TYPE" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
"FAM98A WILD-TYPE" "FAM98A WILD-TYPE" "FAM98A WILD-TYPE"   "FAM98A MUTATED" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
"FAM98A WILD-TYPE" "FAM98A WILD-TYPE" "FAM98A WILD-TYPE" "FAM98A WILD-TYPE" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
"FAM98A WILD-TYPE" "FAM98A WILD-TYPE" "FAM98A WILD-TYPE"   "FAM98A MUTATED" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
"FAM98A WILD-TYPE" "FAM98A WILD-TYPE" "FAM98A WILD-TYPE" "FAM98A WILD-TYPE" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
"FAM98A WILD-TYPE" "FAM98A WILD-TYPE" "FAM98A WILD-TYPE" "FAM98A WILD-TYPE" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"FAM98A WILD-TYPE" "FAM98A WILD-TYPE" "FAM98A WILD-TYPE" "FAM98A WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"FAM98A WILD-TYPE" "FAM98A WILD-TYPE" "FAM98A WILD-TYPE" "FAM98A WILD-TYPE" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
"FAM98A WILD-TYPE" "FAM98A WILD-TYPE" "FAM98A WILD-TYPE" "FAM98A WILD-TYPE" 
      TCGA-US-A77J 
"FAM98A WILD-TYPE" 
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
"FAM98A WILD-TYPE" "FAM98A WILD-TYPE" "FAM98A WILD-TYPE" "FAM98A WILD-TYPE" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"FAM98A WILD-TYPE" "FAM98A WILD-TYPE" "FAM98A WILD-TYPE" "FAM98A WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
"FAM98A WILD-TYPE" "FAM98A WILD-TYPE" "FAM98A WILD-TYPE" "FAM98A WILD-TYPE" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"FAM98A WILD-TYPE" "FAM98A WILD-TYPE" "FAM98A WILD-TYPE"   "FAM98A MUTATED" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
"FAM98A WILD-TYPE" "FAM98A WILD-TYPE" "FAM98A WILD-TYPE" "FAM98A WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
"FAM98A WILD-TYPE" "FAM98A WILD-TYPE" "FAM98A WILD-TYPE" "FAM98A WILD-TYPE" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"FAM98A WILD-TYPE" "FAM98A WILD-TYPE" "FAM98A WILD-TYPE" "FAM98A WILD-TYPE" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
"FAM98A WILD-TYPE" "FAM98A WILD-TYPE" "FAM98A WILD-TYPE" "FAM98A WILD-TYPE" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
"FAM98A WILD-TYPE" "FAM98A WILD-TYPE" "FAM98A WILD-TYPE" "FAM98A WILD-TYPE" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
"FAM98A WILD-TYPE" "FAM98A WILD-TYPE" "FAM98A WILD-TYPE"   "FAM98A MUTATED" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
"FAM98A WILD-TYPE" "FAM98A WILD-TYPE" "FAM98A WILD-TYPE" "FAM98A WILD-TYPE" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
"FAM98A WILD-TYPE" "FAM98A WILD-TYPE" "FAM98A WILD-TYPE"   "FAM98A MUTATED" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
"FAM98A WILD-TYPE" "FAM98A WILD-TYPE" "FAM98A WILD-TYPE" "FAM98A WILD-TYPE" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
"FAM98A WILD-TYPE" "FAM98A WILD-TYPE" "FAM98A WILD-TYPE" "FAM98A WILD-TYPE" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"FAM98A WILD-TYPE" "FAM98A WILD-TYPE" "FAM98A WILD-TYPE" "FAM98A WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"FAM98A WILD-TYPE" "FAM98A WILD-TYPE" "FAM98A WILD-TYPE" "FAM98A WILD-TYPE" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
"FAM98A WILD-TYPE" "FAM98A WILD-TYPE" "FAM98A WILD-TYPE" "FAM98A WILD-TYPE" 
      TCGA-US-A77J 
"FAM98A WILD-TYPE" 
[1] "hr=" "3.3"
D246V2, continuous
                  vv
clus               STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  FAM98A MUTATED          0        0         0         3         0        0
  FAM98A WILD-TYPE        1        4        11        48         2        3
D246V3, multiclass
                  vv
clus               T1+T2 T3+T4
  FAM98A MUTATED       0     3
  FAM98A WILD-TYPE     6    63
D246V4, multiclass
       clus
vv      FAM98A MUTATED FAM98A WILD-TYPE
  T1+T2              0                6
  T3+T4              3               63
D246V5, binary
                  cls
clus                0  1
  FAM98A MUTATED    0  3
  FAM98A WILD-TYPE 17 51
[1] "tbl2"
                  cls
clus               [,1] [,2]
  FAM98A MUTATED      0    3
  FAM98A WILD-TYPE   17   51
   clus
vv  FAM98A MUTATED FAM98A WILD-TYPE
  0              0               17
  1              3               51
                  vv
clus               M0 M1 MX
  FAM98A MUTATED    3  0  0
  FAM98A WILD-TYPE 36  3 30
D246V6, multiclass
    clus
vv   FAM98A MUTATED FAM98A WILD-TYPE
  M0              3               36
  M1              0                3
  MX              0               30
D246V7, binary
                  cls
clus                0  1
  FAM98A MUTATED    3  0
  FAM98A WILD-TYPE 33 36
[1] "tbl2"
                  cls
clus               [,1] [,2]
  FAM98A MUTATED      3    0
  FAM98A WILD-TYPE   33   36
        clus
vv       FAM98A MUTATED FAM98A WILD-TYPE
  FEMALE              3               33
  MALE                0               36
                  vv
clus               PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  FAM98A MUTATED                                     3
  FAM98A WILD-TYPE                                  62
                  vv
clus               PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  FAM98A MUTATED                                       0
  FAM98A WILD-TYPE                                     4
                  vv
clus               PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  FAM98A MUTATED                                                  0
  FAM98A WILD-TYPE                                                2
D246V8, multiclass
                                                  clus
vv                                                 FAM98A MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                           3
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                         0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA              0
                                                  clus
vv                                                 FAM98A WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                            62
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                           4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                2
D246V9, continuous
[1] "Remove cluster labels:" "FAM98A MUTATED"        
clus
  FAM98A MUTATED FAM98A WILD-TYPE 
               2               20 
      TCGA-F2-6880       TCGA-FB-A4P5       TCGA-FB-A4P6       TCGA-FB-A5VM 
"FAM98A WILD-TYPE" "FAM98A WILD-TYPE" "FAM98A WILD-TYPE" "FAM98A WILD-TYPE" 
      TCGA-FB-A78T       TCGA-FB-A7DR       TCGA-H6-A45N       TCGA-H8-A6C1 
"FAM98A WILD-TYPE" "FAM98A WILD-TYPE" "FAM98A WILD-TYPE" "FAM98A WILD-TYPE" 
      TCGA-IB-7644       TCGA-IB-7649       TCGA-IB-7651       TCGA-IB-7885 
"FAM98A WILD-TYPE" "FAM98A WILD-TYPE" "FAM98A WILD-TYPE" "FAM98A WILD-TYPE" 
      TCGA-IB-7886       TCGA-IB-7891       TCGA-IB-8126       TCGA-IB-8127 
"FAM98A WILD-TYPE" "FAM98A WILD-TYPE" "FAM98A WILD-TYPE" "FAM98A WILD-TYPE" 
      TCGA-IB-A5SS       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"FAM98A WILD-TYPE" "FAM98A WILD-TYPE" "FAM98A WILD-TYPE" "FAM98A WILD-TYPE" 
D246V10, continuous
[1] "Remove cluster labels:" "FAM98A MUTATED"        
clus
  FAM98A MUTATED FAM98A WILD-TYPE 
               1               18 
      TCGA-FB-A4P5       TCGA-FB-A4P6       TCGA-FB-A5VM       TCGA-FB-A78T 
"FAM98A WILD-TYPE" "FAM98A WILD-TYPE" "FAM98A WILD-TYPE" "FAM98A WILD-TYPE" 
      TCGA-FB-A7DR       TCGA-H8-A6C1       TCGA-IB-7644       TCGA-IB-7649 
"FAM98A WILD-TYPE" "FAM98A WILD-TYPE" "FAM98A WILD-TYPE" "FAM98A WILD-TYPE" 
      TCGA-IB-7651       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7891 
"FAM98A WILD-TYPE" "FAM98A WILD-TYPE" "FAM98A WILD-TYPE" "FAM98A WILD-TYPE" 
      TCGA-IB-8126       TCGA-IB-8127       TCGA-IB-A5SS       TCGA-IB-A6UG 
"FAM98A WILD-TYPE" "FAM98A WILD-TYPE" "FAM98A WILD-TYPE" "FAM98A WILD-TYPE" 
      TCGA-LB-A7SX       TCGA-OE-A75W 
"FAM98A WILD-TYPE" "FAM98A WILD-TYPE" 
                  vv
clus               R0 R1 RX
  FAM98A MUTATED    2  1  0
  FAM98A WILD-TYPE 40 23  2
D246V11, multiclass
    clus
vv   FAM98A MUTATED FAM98A WILD-TYPE
  R0              2               40
  R1              1               23
  RX              0                2
D246V12, continuous

Clustering(247) Variable = AAMP MUTATION ANALYSIS
D247V1, survival
                sevent
clus2             0  1
  AAMP MUTATED    1  1
  AAMP WILD-TYPE 39 28
  AAMP MUTATED AAMP WILD-TYPE 
             2             67 
  AAMP MUTATED AAMP WILD-TYPE 
             1             28 
$`AAMP MUTATED`
TCGA-FB-A545 TCGA-H6-A45N 
       12.66         7.66 

$`AAMP WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P5 TCGA-FB-A4P6 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR TCGA-FZ-5920 
        0.13        11.93         2.47         0.03         5.46         2.01 
TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 TCGA-H8-A6C1 TCGA-HZ-7289 TCGA-HZ-7918 
       36.20        20.81        12.89        13.02         7.89         0.92 
TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 
        0.66         0.13         0.26        12.13        11.87         0.26 
TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 
        0.62         0.79         0.69         3.95         0.92         0.53 
TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK 
        0.16         2.99         0.76         0.95         6.38         1.51 
TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7651 
       11.41        49.38         4.77        21.90        15.35        19.82 
TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 
       15.65        27.98         4.04         3.62        43.79        15.81 
TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-8127 
       19.66        16.04         3.85        15.98         0.56        17.16 
TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG 
       10.82         9.86         7.20        15.12         0.26         1.35 
TCGA-LB-A7SX TCGA-OE-A75W TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E 
        4.18         3.62         8.12        13.68        16.80        14.14 
TCGA-US-A77J 
       18.67 

  AAMP MUTATED AAMP WILD-TYPE 
          7.66           0.03 
  AAMP MUTATED AAMP WILD-TYPE 
         12.66          49.38 
  AAMP MUTATED AAMP WILD-TYPE 
         10.16           7.20 
[1] "7.7 - 12.7 (10.2)" "0.0 - 49.4 (7.2)" 
    TCGA-F2-6879     TCGA-F2-6880     TCGA-F2-7273     TCGA-F2-7276 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-F2-A44G     TCGA-F2-A44H     TCGA-FB-A4P5     TCGA-FB-A4P6 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-FB-A545     TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-FB-A7DR 
  "AAMP MUTATED" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-FZ-5920     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-H6-8124 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-H6-A45N     TCGA-H8-A6C1     TCGA-HZ-7289     TCGA-HZ-7918 
  "AAMP MUTATED" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-HZ-7919     TCGA-HZ-7922     TCGA-HZ-7923     TCGA-HZ-7924 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-HZ-7925     TCGA-HZ-7926     TCGA-HZ-8001     TCGA-HZ-8002 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-HZ-8003     TCGA-HZ-8005     TCGA-HZ-8315     TCGA-HZ-8317 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-HZ-8636     TCGA-HZ-8638     TCGA-HZ-A49G     TCGA-HZ-A49H 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-IB-7644     TCGA-IB-7645 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7651 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-IB-7888     TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-IB-7893     TCGA-IB-7897     TCGA-IB-8126     TCGA-IB-8127 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-IB-A5ST     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-PZ-A5RE     TCGA-Q3-A5QY     TCGA-US-A779     TCGA-US-A77E 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-US-A77J 
"AAMP WILD-TYPE" 
    TCGA-F2-6879     TCGA-F2-6880     TCGA-F2-7273     TCGA-F2-7276 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-F2-A44G     TCGA-F2-A44H     TCGA-FB-A4P5     TCGA-FB-A4P6 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-FB-A545     TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-FB-A7DR 
  "AAMP MUTATED" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-FZ-5920     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-H6-8124 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-H6-A45N     TCGA-H8-A6C1     TCGA-HZ-7289     TCGA-HZ-7918 
  "AAMP MUTATED" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-HZ-7919     TCGA-HZ-7922     TCGA-HZ-7923     TCGA-HZ-7924 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-HZ-7925     TCGA-HZ-7926     TCGA-HZ-8001     TCGA-HZ-8002 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-HZ-8003     TCGA-HZ-8005     TCGA-HZ-8315     TCGA-HZ-8317 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-HZ-8636     TCGA-HZ-8638     TCGA-HZ-A49G     TCGA-HZ-A49H 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-IB-7644     TCGA-IB-7645 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7651 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-IB-7888     TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-IB-7893     TCGA-IB-7897     TCGA-IB-8126     TCGA-IB-8127 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-IB-A5ST     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-PZ-A5RE     TCGA-Q3-A5QY     TCGA-US-A779     TCGA-US-A77E 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-US-A77J 
"AAMP WILD-TYPE" 
    TCGA-F2-6879     TCGA-F2-6880     TCGA-F2-7273     TCGA-F2-7276 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-F2-A44G     TCGA-F2-A44H     TCGA-FB-A4P5     TCGA-FB-A4P6 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-FB-A545     TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-FB-A7DR 
  "AAMP MUTATED" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-FZ-5920     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-H6-8124 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-H6-A45N     TCGA-H8-A6C1     TCGA-HZ-7289     TCGA-HZ-7918 
  "AAMP MUTATED" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-HZ-7919     TCGA-HZ-7922     TCGA-HZ-7923     TCGA-HZ-7924 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-HZ-7925     TCGA-HZ-7926     TCGA-HZ-8001     TCGA-HZ-8002 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-HZ-8003     TCGA-HZ-8005     TCGA-HZ-8315     TCGA-HZ-8317 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-HZ-8636     TCGA-HZ-8638     TCGA-HZ-A49G     TCGA-HZ-A49H 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-IB-7644     TCGA-IB-7645 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7651 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-IB-7888     TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-IB-7893     TCGA-IB-7897     TCGA-IB-8126     TCGA-IB-8127 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-IB-A5ST     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-PZ-A5RE     TCGA-Q3-A5QY     TCGA-US-A779     TCGA-US-A77E 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-US-A77J 
"AAMP WILD-TYPE" 
[1] "Remove cluster labels:" "AAMP MUTATED"          
clus
  AAMP MUTATED AAMP WILD-TYPE 
             2             67 
    TCGA-F2-6879     TCGA-F2-6880     TCGA-F2-7273     TCGA-F2-7276 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-F2-A44G     TCGA-F2-A44H     TCGA-FB-A4P5     TCGA-FB-A4P6 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-FB-A7DR     TCGA-FZ-5920 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-FZ-5922     TCGA-FZ-5923     TCGA-H6-8124     TCGA-H8-A6C1 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-HZ-7289     TCGA-HZ-7918     TCGA-HZ-7919     TCGA-HZ-7922 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-HZ-7923     TCGA-HZ-7924     TCGA-HZ-7925     TCGA-HZ-7926 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-HZ-8001     TCGA-HZ-8002     TCGA-HZ-8003     TCGA-HZ-8005 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-HZ-8315     TCGA-HZ-8317     TCGA-HZ-8636     TCGA-HZ-8638 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-HZ-A49G     TCGA-HZ-A49H     TCGA-HZ-A4BH     TCGA-HZ-A4BK 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-IB-7644     TCGA-IB-7645     TCGA-IB-7646     TCGA-IB-7647 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-IB-7649     TCGA-IB-7651     TCGA-IB-7652     TCGA-IB-7885 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-IB-7886     TCGA-IB-7887     TCGA-IB-7888     TCGA-IB-7889 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-IB-7890     TCGA-IB-7891     TCGA-IB-7893     TCGA-IB-7897 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-IB-8126     TCGA-IB-8127     TCGA-IB-A5SO     TCGA-IB-A5SP 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-IB-A5SQ     TCGA-IB-A5SS     TCGA-IB-A5ST     TCGA-IB-A6UG 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-LB-A7SX     TCGA-OE-A75W     TCGA-PZ-A5RE     TCGA-Q3-A5QY 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-US-A779     TCGA-US-A77E     TCGA-US-A77J 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
D247V2, continuous
                vv
clus             STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  AAMP MUTATED          0        0         0         3         0        0
  AAMP WILD-TYPE        1        4        11        48         2        3
D247V3, multiclass
                vv
clus             T1+T2 T3+T4
  AAMP MUTATED       0     3
  AAMP WILD-TYPE     6    63
D247V4, multiclass
       clus
vv      AAMP MUTATED AAMP WILD-TYPE
  T1+T2            0              6
  T3+T4            3             63
D247V5, binary
                cls
clus              0  1
  AAMP MUTATED    0  3
  AAMP WILD-TYPE 17 51
[1] "tbl2"
                cls
clus             [,1] [,2]
  AAMP MUTATED      0    3
  AAMP WILD-TYPE   17   51
   clus
vv  AAMP MUTATED AAMP WILD-TYPE
  0            0             17
  1            3             51
                vv
clus             M0 M1 MX
  AAMP MUTATED    1  0  2
  AAMP WILD-TYPE 38  3 28
D247V6, multiclass
    clus
vv   AAMP MUTATED AAMP WILD-TYPE
  M0            1             38
  M1            0              3
  MX            2             28
D247V7, binary
                cls
clus              0  1
  AAMP MUTATED    3  0
  AAMP WILD-TYPE 33 36
[1] "tbl2"
                cls
clus             [,1] [,2]
  AAMP MUTATED      3    0
  AAMP WILD-TYPE   33   36
        clus
vv       AAMP MUTATED AAMP WILD-TYPE
  FEMALE            3             33
  MALE              0             36
                vv
clus             PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  AAMP MUTATED                                     2
  AAMP WILD-TYPE                                  63
                vv
clus             PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  AAMP MUTATED                                       1
  AAMP WILD-TYPE                                     3
                vv
clus             PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  AAMP MUTATED                                                  0
  AAMP WILD-TYPE                                                2
D247V8, multiclass
                                                  clus
vv                                                 AAMP MUTATED AAMP WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                         2             63
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                       1              3
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA            0              2
D247V9, continuous
[1] "Remove cluster labels:" "AAMP MUTATED"          
clus
  AAMP MUTATED AAMP WILD-TYPE 
             1             21 
    TCGA-F2-6880     TCGA-FB-A4P5     TCGA-FB-A4P6     TCGA-FB-A5VM 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-FB-A78T     TCGA-FB-A7DR     TCGA-H6-8124     TCGA-H8-A6C1 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-IB-7644     TCGA-IB-7649     TCGA-IB-7651     TCGA-IB-7885 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-IB-7886     TCGA-IB-7887     TCGA-IB-7891     TCGA-IB-8126 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-IB-8127     TCGA-IB-A5SS     TCGA-IB-A6UG     TCGA-LB-A7SX 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-OE-A75W 
"AAMP WILD-TYPE" 
D247V10, continuous
                vv
clus             R0 R1 RX
  AAMP MUTATED    1  0  0
  AAMP WILD-TYPE 41 24  2
D247V11, multiclass
[1] "Remove cluster labels:" "AAMP MUTATED"          
clus
  AAMP MUTATED AAMP WILD-TYPE 
             1             67 
    TCGA-F2-6879     TCGA-F2-6880     TCGA-F2-7273     TCGA-F2-7276 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-F2-A44G     TCGA-F2-A44H     TCGA-FB-A4P5     TCGA-FB-A5VM 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-FB-A78T     TCGA-FB-A7DR     TCGA-FZ-5920     TCGA-FZ-5922 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-FZ-5923     TCGA-H6-8124     TCGA-H8-A6C1     TCGA-HZ-7289 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-HZ-7918     TCGA-HZ-7919     TCGA-HZ-7920     TCGA-HZ-7922 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-HZ-7923     TCGA-HZ-7924     TCGA-HZ-7925     TCGA-HZ-7926 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-HZ-8001     TCGA-HZ-8002     TCGA-HZ-8003     TCGA-HZ-8005 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-HZ-8315     TCGA-HZ-8317     TCGA-HZ-8636     TCGA-HZ-8638 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-HZ-A49G     TCGA-HZ-A49H     TCGA-HZ-A49I     TCGA-HZ-A4BH 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-HZ-A4BK     TCGA-IB-7644     TCGA-IB-7645     TCGA-IB-7646 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7651     TCGA-IB-7652 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887     TCGA-IB-7888 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891     TCGA-IB-7893 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-IB-7897     TCGA-IB-8126     TCGA-IB-8127     TCGA-IB-A5SO 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS     TCGA-IB-A5ST 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W     TCGA-Q3-A5QY 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-US-A779     TCGA-US-A77E     TCGA-US-A77J 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
D247V12, continuous

Clustering(248) Variable = KBTBD4 MUTATION ANALYSIS
D248V1, survival
                  sevent
clus2               0  1
  KBTBD4 MUTATED    2  2
  KBTBD4 WILD-TYPE 38 27
  KBTBD4 MUTATED KBTBD4 WILD-TYPE 
               4               65 
  KBTBD4 MUTATED KBTBD4 WILD-TYPE 
               2               27 
$`KBTBD4 MUTATED`
TCGA-FB-A545 TCGA-HZ-7923 TCGA-IB-7887 TCGA-IB-7893 
       12.66         0.26         3.62         3.85 

$`KBTBD4 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P5 TCGA-FB-A4P6 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR TCGA-FZ-5920 
        0.13        11.93         2.47         0.03         5.46         2.01 
TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7289 
       36.20        20.81        12.89         7.66        13.02         7.89 
TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 
        0.92         0.66         0.13        12.13        11.87         0.26 
TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 
        0.62         0.79         0.69         3.95         0.92         0.53 
TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK 
        0.16         2.99         0.76         0.95         6.38         1.51 
TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7651 
       11.41        49.38         4.77        21.90        15.35        19.82 
TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 
       15.65        27.98         4.04        43.79        15.81        19.66 
TCGA-IB-7891 TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP 
       16.04        15.98         0.56        17.16        10.82         9.86 
TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W 
        7.20        15.12         0.26         1.35         4.18         3.62 
TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
        8.12        13.68        16.80        14.14        18.67 

  KBTBD4 MUTATED KBTBD4 WILD-TYPE 
            0.26             0.03 
  KBTBD4 MUTATED KBTBD4 WILD-TYPE 
           12.66            49.38 
  KBTBD4 MUTATED KBTBD4 WILD-TYPE 
           3.735            7.890 
[1] "0.3 - 12.7 (3.7)" "0.0 - 49.4 (7.9)"
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
"KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
  "KBTBD4 MUTATED" "KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
"KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
"KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE"   "KBTBD4 MUTATED" "KBTBD4 WILD-TYPE" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
"KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
"KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
"KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
"KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
"KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE"   "KBTBD4 MUTATED" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
"KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
  "KBTBD4 MUTATED" "KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
"KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE" 
      TCGA-US-A77J 
"KBTBD4 WILD-TYPE" 
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
"KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
  "KBTBD4 MUTATED" "KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
"KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
"KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE"   "KBTBD4 MUTATED" "KBTBD4 WILD-TYPE" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
"KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
"KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
"KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
"KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
"KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE"   "KBTBD4 MUTATED" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
"KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
  "KBTBD4 MUTATED" "KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
"KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE" 
      TCGA-US-A77J 
"KBTBD4 WILD-TYPE" 
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
"KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
  "KBTBD4 MUTATED" "KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
"KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
"KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE"   "KBTBD4 MUTATED" "KBTBD4 WILD-TYPE" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
"KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
"KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
"KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
"KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
"KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE"   "KBTBD4 MUTATED" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
"KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
  "KBTBD4 MUTATED" "KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
"KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE" 
      TCGA-US-A77J 
"KBTBD4 WILD-TYPE" 
[1] "hr=" "3.9"
D248V2, continuous
                  vv
clus               STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  KBTBD4 MUTATED          0        0         2         2         0        0
  KBTBD4 WILD-TYPE        1        4         9        49         2        3
D248V3, multiclass
                  vv
clus               T1+T2 T3+T4
  KBTBD4 MUTATED       0     4
  KBTBD4 WILD-TYPE     6    62
D248V4, multiclass
       clus
vv      KBTBD4 MUTATED KBTBD4 WILD-TYPE
  T1+T2              0                6
  T3+T4              4               62
D248V5, binary
                  cls
clus                0  1
  KBTBD4 MUTATED    2  2
  KBTBD4 WILD-TYPE 15 52
[1] "tbl2"
                  cls
clus               [,1] [,2]
  KBTBD4 MUTATED      2    2
  KBTBD4 WILD-TYPE   15   52
   clus
vv  KBTBD4 MUTATED KBTBD4 WILD-TYPE
  0              2               15
  1              2               52
                  vv
clus               M0 M1 MX
  KBTBD4 MUTATED    3  0  1
  KBTBD4 WILD-TYPE 36  3 29
D248V6, multiclass
    clus
vv   KBTBD4 MUTATED KBTBD4 WILD-TYPE
  M0              3               36
  M1              0                3
  MX              1               29
D248V7, binary
                  cls
clus                0  1
  KBTBD4 MUTATED    2  2
  KBTBD4 WILD-TYPE 34 34
[1] "tbl2"
                  cls
clus               [,1] [,2]
  KBTBD4 MUTATED      2    2
  KBTBD4 WILD-TYPE   34   34
        clus
vv       KBTBD4 MUTATED KBTBD4 WILD-TYPE
  FEMALE              2               34
  MALE                2               34
                  vv
clus               PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  KBTBD4 MUTATED                                     4
  KBTBD4 WILD-TYPE                                  61
                  vv
clus               PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  KBTBD4 MUTATED                                       0
  KBTBD4 WILD-TYPE                                     4
                  vv
clus               PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  KBTBD4 MUTATED                                                  0
  KBTBD4 WILD-TYPE                                                2
D248V8, multiclass
                                                  clus
vv                                                 KBTBD4 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                           4
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                         0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA              0
                                                  clus
vv                                                 KBTBD4 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                            61
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                           4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                2
D248V9, continuous
[1] "Remove cluster labels:" "KBTBD4 MUTATED"        
clus
  KBTBD4 MUTATED KBTBD4 WILD-TYPE 
               1               21 
      TCGA-F2-6880       TCGA-FB-A4P5       TCGA-FB-A4P6       TCGA-FB-A5VM 
"KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE" 
      TCGA-FB-A78T       TCGA-FB-A7DR       TCGA-H6-8124       TCGA-H6-A45N 
"KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE" 
      TCGA-H8-A6C1       TCGA-IB-7644       TCGA-IB-7649       TCGA-IB-7651 
"KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE" 
      TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7891       TCGA-IB-8126 
"KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE" 
      TCGA-IB-8127       TCGA-IB-A5SS       TCGA-IB-A6UG       TCGA-LB-A7SX 
"KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE" "KBTBD4 WILD-TYPE" 
      TCGA-OE-A75W 
"KBTBD4 WILD-TYPE" 
D248V10, continuous
                  vv
clus               R0 R1 RX
  KBTBD4 MUTATED    2  1  0
  KBTBD4 WILD-TYPE 40 23  2
D248V11, multiclass
    clus
vv   KBTBD4 MUTATED KBTBD4 WILD-TYPE
  R0              2               40
  R1              1               23
  RX              0                2
D248V12, continuous

Clustering(249) Variable = KCTD19 MUTATION ANALYSIS
D249V1, survival
                  sevent
clus2               0  1
  KCTD19 MUTATED    2  3
  KCTD19 WILD-TYPE 38 26
  KCTD19 MUTATED KCTD19 WILD-TYPE 
               5               64 
  KCTD19 MUTATED KCTD19 WILD-TYPE 
               3               26 
$`KCTD19 MUTATED`
TCGA-H6-8124 TCGA-IB-7651 TCGA-IB-7888 TCGA-IB-7893 TCGA-IB-8127 
       12.89        19.82        43.79         3.85        17.16 

$`KCTD19 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P5 TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR 
        0.13        11.93        12.66         2.47         0.03         5.46 
TCGA-FZ-5920 TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7289 
        2.01        36.20        20.81         7.66        13.02         7.89 
TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 
        0.92         0.66         0.13         0.26        12.13        11.87 
TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 
        0.26         0.62         0.79         0.69         3.95         0.92 
TCGA-HZ-8317 TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH 
        0.53         0.16         2.99         0.76         0.95         6.38 
TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 
        1.51        11.41        49.38         4.77        21.90        15.35 
TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7889 TCGA-IB-7890 
       15.65        27.98         4.04         3.62        15.81        19.66 
TCGA-IB-7891 TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ 
       16.04        15.98         0.56        10.82         9.86         7.20 
TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W TCGA-PZ-A5RE 
       15.12         0.26         1.35         4.18         3.62         8.12 
TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
       13.68        16.80        14.14        18.67 

  KCTD19 MUTATED KCTD19 WILD-TYPE 
            3.85             0.03 
  KCTD19 MUTATED KCTD19 WILD-TYPE 
           43.79            49.38 
  KCTD19 MUTATED KCTD19 WILD-TYPE 
           17.16             7.15 
[1] "3.9 - 43.8 (17.2)" "0.0 - 49.4 (7.2)" 
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
"KCTD19 WILD-TYPE" "KCTD19 WILD-TYPE" "KCTD19 WILD-TYPE" "KCTD19 WILD-TYPE" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"KCTD19 WILD-TYPE" "KCTD19 WILD-TYPE" "KCTD19 WILD-TYPE" "KCTD19 WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
"KCTD19 WILD-TYPE" "KCTD19 WILD-TYPE" "KCTD19 WILD-TYPE" "KCTD19 WILD-TYPE" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"KCTD19 WILD-TYPE" "KCTD19 WILD-TYPE" "KCTD19 WILD-TYPE"   "KCTD19 MUTATED" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
"KCTD19 WILD-TYPE" "KCTD19 WILD-TYPE" "KCTD19 WILD-TYPE" "KCTD19 WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
"KCTD19 WILD-TYPE" "KCTD19 WILD-TYPE" "KCTD19 WILD-TYPE" "KCTD19 WILD-TYPE" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"KCTD19 WILD-TYPE" "KCTD19 WILD-TYPE" "KCTD19 WILD-TYPE" "KCTD19 WILD-TYPE" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
"KCTD19 WILD-TYPE" "KCTD19 WILD-TYPE" "KCTD19 WILD-TYPE" "KCTD19 WILD-TYPE" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
"KCTD19 WILD-TYPE" "KCTD19 WILD-TYPE" "KCTD19 WILD-TYPE" "KCTD19 WILD-TYPE" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
"KCTD19 WILD-TYPE" "KCTD19 WILD-TYPE" "KCTD19 WILD-TYPE" "KCTD19 WILD-TYPE" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
"KCTD19 WILD-TYPE" "KCTD19 WILD-TYPE" "KCTD19 WILD-TYPE"   "KCTD19 MUTATED" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
"KCTD19 WILD-TYPE" "KCTD19 WILD-TYPE" "KCTD19 WILD-TYPE" "KCTD19 WILD-TYPE" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
  "KCTD19 MUTATED" "KCTD19 WILD-TYPE" "KCTD19 WILD-TYPE" "KCTD19 WILD-TYPE" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
  "KCTD19 MUTATED" "KCTD19 WILD-TYPE" "KCTD19 WILD-TYPE"   "KCTD19 MUTATED" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"KCTD19 WILD-TYPE" "KCTD19 WILD-TYPE" "KCTD19 WILD-TYPE" "KCTD19 WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"KCTD19 WILD-TYPE" "KCTD19 WILD-TYPE" "KCTD19 WILD-TYPE" "KCTD19 WILD-TYPE" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
"KCTD19 WILD-TYPE" "KCTD19 WILD-TYPE" "KCTD19 WILD-TYPE" "KCTD19 WILD-TYPE" 
      TCGA-US-A77J 
"KCTD19 WILD-TYPE" 
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
"KCTD19 WILD-TYPE" "KCTD19 WILD-TYPE" "KCTD19 WILD-TYPE" "KCTD19 WILD-TYPE" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"KCTD19 WILD-TYPE" "KCTD19 WILD-TYPE" "KCTD19 WILD-TYPE" "KCTD19 WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
"KCTD19 WILD-TYPE" "KCTD19 WILD-TYPE" "KCTD19 WILD-TYPE" "KCTD19 WILD-TYPE" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"KCTD19 WILD-TYPE" "KCTD19 WILD-TYPE" "KCTD19 WILD-TYPE"   "KCTD19 MUTATED" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
"KCTD19 WILD-TYPE" "KCTD19 WILD-TYPE" "KCTD19 WILD-TYPE" "KCTD19 WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
"KCTD19 WILD-TYPE" "KCTD19 WILD-TYPE" "KCTD19 WILD-TYPE" "KCTD19 WILD-TYPE" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"KCTD19 WILD-TYPE" "KCTD19 WILD-TYPE" "KCTD19 WILD-TYPE" "KCTD19 WILD-TYPE" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
"KCTD19 WILD-TYPE" "KCTD19 WILD-TYPE" "KCTD19 WILD-TYPE" "KCTD19 WILD-TYPE" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
"KCTD19 WILD-TYPE" "KCTD19 WILD-TYPE" "KCTD19 WILD-TYPE" "KCTD19 WILD-TYPE" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
"KCTD19 WILD-TYPE" "KCTD19 WILD-TYPE" "KCTD19 WILD-TYPE" "KCTD19 WILD-TYPE" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
"KCTD19 WILD-TYPE" "KCTD19 WILD-TYPE" "KCTD19 WILD-TYPE"   "KCTD19 MUTATED" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
"KCTD19 WILD-TYPE" "KCTD19 WILD-TYPE" "KCTD19 WILD-TYPE" "KCTD19 WILD-TYPE" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
  "KCTD19 MUTATED" "KCTD19 WILD-TYPE" "KCTD19 WILD-TYPE" "KCTD19 WILD-TYPE" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
  "KCTD19 MUTATED" "KCTD19 WILD-TYPE" "KCTD19 WILD-TYPE"   "KCTD19 MUTATED" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"KCTD19 WILD-TYPE" "KCTD19 WILD-TYPE" "KCTD19 WILD-TYPE" "KCTD19 WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"KCTD19 WILD-TYPE" "KCTD19 WILD-TYPE" "KCTD19 WILD-TYPE" "KCTD19 WILD-TYPE" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
"KCTD19 WILD-TYPE" "KCTD19 WILD-TYPE" "KCTD19 WILD-TYPE" "KCTD19 WILD-TYPE" 
      TCGA-US-A77J 
"KCTD19 WILD-TYPE" 
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
"KCTD19 WILD-TYPE" "KCTD19 WILD-TYPE" "KCTD19 WILD-TYPE" "KCTD19 WILD-TYPE" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"KCTD19 WILD-TYPE" "KCTD19 WILD-TYPE" "KCTD19 WILD-TYPE" "KCTD19 WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
"KCTD19 WILD-TYPE" "KCTD19 WILD-TYPE" "KCTD19 WILD-TYPE" "KCTD19 WILD-TYPE" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"KCTD19 WILD-TYPE" "KCTD19 WILD-TYPE" "KCTD19 WILD-TYPE"   "KCTD19 MUTATED" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
"KCTD19 WILD-TYPE" "KCTD19 WILD-TYPE" "KCTD19 WILD-TYPE" "KCTD19 WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
"KCTD19 WILD-TYPE" "KCTD19 WILD-TYPE" "KCTD19 WILD-TYPE" "KCTD19 WILD-TYPE" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"KCTD19 WILD-TYPE" "KCTD19 WILD-TYPE" "KCTD19 WILD-TYPE" "KCTD19 WILD-TYPE" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
"KCTD19 WILD-TYPE" "KCTD19 WILD-TYPE" "KCTD19 WILD-TYPE" "KCTD19 WILD-TYPE" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
"KCTD19 WILD-TYPE" "KCTD19 WILD-TYPE" "KCTD19 WILD-TYPE" "KCTD19 WILD-TYPE" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
"KCTD19 WILD-TYPE" "KCTD19 WILD-TYPE" "KCTD19 WILD-TYPE" "KCTD19 WILD-TYPE" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
"KCTD19 WILD-TYPE" "KCTD19 WILD-TYPE" "KCTD19 WILD-TYPE"   "KCTD19 MUTATED" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
"KCTD19 WILD-TYPE" "KCTD19 WILD-TYPE" "KCTD19 WILD-TYPE" "KCTD19 WILD-TYPE" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
  "KCTD19 MUTATED" "KCTD19 WILD-TYPE" "KCTD19 WILD-TYPE" "KCTD19 WILD-TYPE" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
  "KCTD19 MUTATED" "KCTD19 WILD-TYPE" "KCTD19 WILD-TYPE"   "KCTD19 MUTATED" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"KCTD19 WILD-TYPE" "KCTD19 WILD-TYPE" "KCTD19 WILD-TYPE" "KCTD19 WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"KCTD19 WILD-TYPE" "KCTD19 WILD-TYPE" "KCTD19 WILD-TYPE" "KCTD19 WILD-TYPE" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
"KCTD19 WILD-TYPE" "KCTD19 WILD-TYPE" "KCTD19 WILD-TYPE" "KCTD19 WILD-TYPE" 
      TCGA-US-A77J 
"KCTD19 WILD-TYPE" 
[1] "hr=" "1.7"
D249V2, continuous
                  vv
clus               STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  KCTD19 MUTATED          0        0         2         3         0        0
  KCTD19 WILD-TYPE        1        4         9        48         2        3
D249V3, multiclass
                  vv
clus               T1+T2 T3+T4
  KCTD19 MUTATED       0     5
  KCTD19 WILD-TYPE     6    61
D249V4, multiclass
       clus
vv      KCTD19 MUTATED KCTD19 WILD-TYPE
  T1+T2              0                6
  T3+T4              5               61
D249V5, binary
                  cls
clus                0  1
  KCTD19 MUTATED    2  3
  KCTD19 WILD-TYPE 15 51
[1] "tbl2"
                  cls
clus               [,1] [,2]
  KCTD19 MUTATED      2    3
  KCTD19 WILD-TYPE   15   51
   clus
vv  KCTD19 MUTATED KCTD19 WILD-TYPE
  0              2               15
  1              3               51
                  vv
clus               M0 M1 MX
  KCTD19 MUTATED    5  0  0
  KCTD19 WILD-TYPE 34  3 30
D249V6, multiclass
    clus
vv   KCTD19 MUTATED KCTD19 WILD-TYPE
  M0              5               34
  M1              0                3
  MX              0               30
D249V7, binary
                  cls
clus                0  1
  KCTD19 MUTATED    3  2
  KCTD19 WILD-TYPE 33 34
[1] "tbl2"
                  cls
clus               [,1] [,2]
  KCTD19 MUTATED      3    2
  KCTD19 WILD-TYPE   33   34
        clus
vv       KCTD19 MUTATED KCTD19 WILD-TYPE
  FEMALE              3               33
  MALE                2               34
                  vv
clus               PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  KCTD19 MUTATED                                     5
  KCTD19 WILD-TYPE                                  60
                  vv
clus               PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  KCTD19 MUTATED                                       0
  KCTD19 WILD-TYPE                                     4
                  vv
clus               PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  KCTD19 MUTATED                                                  0
  KCTD19 WILD-TYPE                                                2
D249V8, multiclass
                                                  clus
vv                                                 KCTD19 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                           5
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                         0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA              0
                                                  clus
vv                                                 KCTD19 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                            60
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                           4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                2
D249V9, continuous
D249V10, continuous
                  vv
clus               R0 R1 RX
  KCTD19 MUTATED    4  1  0
  KCTD19 WILD-TYPE 38 23  2
D249V11, multiclass
    clus
vv   KCTD19 MUTATED KCTD19 WILD-TYPE
  R0              4               38
  R1              1               23
  RX              0                2
D249V12, continuous

Clustering(250) Variable = EPS8L3 MUTATION ANALYSIS
D250V1, survival
                  sevent
clus2               0  1
  EPS8L3 MUTATED    2  2
  EPS8L3 WILD-TYPE 38 27
  EPS8L3 MUTATED EPS8L3 WILD-TYPE 
               4               65 
  EPS8L3 MUTATED EPS8L3 WILD-TYPE 
               2               27 
$`EPS8L3 MUTATED`
TCGA-F2-6880 TCGA-H6-A45N TCGA-IB-7651 TCGA-IB-A5ST 
        9.70         7.66        19.82         0.26 

$`EPS8L3 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H TCGA-FB-A4P5 
       10.98        11.84         7.10         5.03        19.27         0.13 
TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR TCGA-FZ-5920 
       11.93        12.66         2.47         0.03         5.46         2.01 
TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 TCGA-H8-A6C1 TCGA-HZ-7289 TCGA-HZ-7918 
       36.20        20.81        12.89        13.02         7.89         0.92 
TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 
        0.66         0.13         0.26        12.13        11.87         0.26 
TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 
        0.62         0.79         0.69         3.95         0.92         0.53 
TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK 
        0.16         2.99         0.76         0.95         6.38         1.51 
TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7652 
       11.41        49.38         4.77        21.90        15.35        15.65 
TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 
       27.98         4.04         3.62        43.79        15.81        19.66 
TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO 
       16.04         3.85        15.98         0.56        17.16        10.82 
TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W 
        9.86         7.20        15.12         1.35         4.18         3.62 
TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
        8.12        13.68        16.80        14.14        18.67 

  EPS8L3 MUTATED EPS8L3 WILD-TYPE 
            0.26             0.03 
  EPS8L3 MUTATED EPS8L3 WILD-TYPE 
           19.82            49.38 
  EPS8L3 MUTATED EPS8L3 WILD-TYPE 
            8.68             7.20 
[1] "0.3 - 19.8 (8.7)" "0.0 - 49.4 (7.2)"
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
"EPS8L3 WILD-TYPE"   "EPS8L3 MUTATED" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
  "EPS8L3 MUTATED" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE"   "EPS8L3 MUTATED" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
  "EPS8L3 MUTATED" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-US-A77J 
"EPS8L3 WILD-TYPE" 
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
"EPS8L3 WILD-TYPE"   "EPS8L3 MUTATED" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
  "EPS8L3 MUTATED" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE"   "EPS8L3 MUTATED" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
  "EPS8L3 MUTATED" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-US-A77J 
"EPS8L3 WILD-TYPE" 
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
"EPS8L3 WILD-TYPE"   "EPS8L3 MUTATED" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
  "EPS8L3 MUTATED" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE"   "EPS8L3 MUTATED" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
  "EPS8L3 MUTATED" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-US-A77J 
"EPS8L3 WILD-TYPE" 
[1] "hr=" "1.2"
D250V2, continuous
                  vv
clus               STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  EPS8L3 MUTATED          0        0         0         4         0        0
  EPS8L3 WILD-TYPE        1        4        11        47         2        3
D250V3, multiclass
                  vv
clus               T1+T2 T3+T4
  EPS8L3 MUTATED       0     4
  EPS8L3 WILD-TYPE     6    62
D250V4, multiclass
       clus
vv      EPS8L3 MUTATED EPS8L3 WILD-TYPE
  T1+T2              0                6
  T3+T4              4               62
D250V5, binary
                  cls
clus                0  1
  EPS8L3 MUTATED    0  4
  EPS8L3 WILD-TYPE 17 50
[1] "tbl2"
                  cls
clus               [,1] [,2]
  EPS8L3 MUTATED      0    4
  EPS8L3 WILD-TYPE   17   50
   clus
vv  EPS8L3 MUTATED EPS8L3 WILD-TYPE
  0              0               17
  1              4               50
                  vv
clus               M0 M1 MX
  EPS8L3 MUTATED    3  0  1
  EPS8L3 WILD-TYPE 36  3 29
D250V6, multiclass
    clus
vv   EPS8L3 MUTATED EPS8L3 WILD-TYPE
  M0              3               36
  M1              0                3
  MX              1               29
D250V7, binary
                  cls
clus                0  1
  EPS8L3 MUTATED    3  1
  EPS8L3 WILD-TYPE 33 35
[1] "tbl2"
                  cls
clus               [,1] [,2]
  EPS8L3 MUTATED      3    1
  EPS8L3 WILD-TYPE   33   35
        clus
vv       EPS8L3 MUTATED EPS8L3 WILD-TYPE
  FEMALE              3               33
  MALE                1               35
                  vv
clus               PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  EPS8L3 MUTATED                                     3
  EPS8L3 WILD-TYPE                                  62
                  vv
clus               PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  EPS8L3 MUTATED                                       1
  EPS8L3 WILD-TYPE                                     3
                  vv
clus               PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  EPS8L3 MUTATED                                                  0
  EPS8L3 WILD-TYPE                                                2
D250V8, multiclass
                                                  clus
vv                                                 EPS8L3 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                           3
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                         1
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA              0
                                                  clus
vv                                                 EPS8L3 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                            62
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                           3
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                2
D250V9, continuous
D250V10, continuous
[1] "Remove cluster labels:" "EPS8L3 MUTATED"        
clus
  EPS8L3 MUTATED EPS8L3 WILD-TYPE 
               1               18 
      TCGA-FB-A4P5       TCGA-FB-A4P6       TCGA-FB-A5VM       TCGA-FB-A78T 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-FB-A7DR       TCGA-H6-8124       TCGA-H8-A6C1       TCGA-IB-7644 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-IB-7649       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7891 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-IB-8126       TCGA-IB-8127       TCGA-IB-A5SS       TCGA-IB-A6UG 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-LB-A7SX       TCGA-OE-A75W 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
                  vv
clus               R0 R1 RX
  EPS8L3 MUTATED    3  0  0
  EPS8L3 WILD-TYPE 39 24  2
D250V11, multiclass
    clus
vv   EPS8L3 MUTATED EPS8L3 WILD-TYPE
  R0              3               39
  R1              0               24
  RX              0                2
D250V12, continuous

Clustering(251) Variable = HMX2 MUTATION ANALYSIS
D251V1, survival
                sevent
clus2             0  1
  HMX2 MUTATED    2  2
  HMX2 WILD-TYPE 38 27
  HMX2 MUTATED HMX2 WILD-TYPE 
             4             65 
  HMX2 MUTATED HMX2 WILD-TYPE 
             2             27 
$`HMX2 MUTATED`
TCGA-HZ-8317 TCGA-IB-7651 TCGA-IB-7888 TCGA-IB-8126 
        0.53        19.82        43.79         0.56 

$`HMX2 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P5 TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR 
        0.13        11.93        12.66         2.47         0.03         5.46 
TCGA-FZ-5920 TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 
        2.01        36.20        20.81        12.89         7.66        13.02 
TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 
        7.89         0.92         0.66         0.13         0.26        12.13 
TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 
       11.87         0.26         0.62         0.79         0.69         3.95 
TCGA-HZ-8315 TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH 
        0.92         0.16         2.99         0.76         0.95         6.38 
TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 
        1.51        11.41        49.38         4.77        21.90        15.35 
TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7889 TCGA-IB-7890 
       15.65        27.98         4.04         3.62        15.81        19.66 
TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP 
       16.04         3.85        15.98        17.16        10.82         9.86 
TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W 
        7.20        15.12         0.26         1.35         4.18         3.62 
TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
        8.12        13.68        16.80        14.14        18.67 

  HMX2 MUTATED HMX2 WILD-TYPE 
          0.53           0.03 
  HMX2 MUTATED HMX2 WILD-TYPE 
         43.79          49.38 
  HMX2 MUTATED HMX2 WILD-TYPE 
         10.19           7.66 
[1] "0.5 - 43.8 (10.2)" "0.0 - 49.4 (7.7)" 
    TCGA-F2-6879     TCGA-F2-6880     TCGA-F2-7273     TCGA-F2-7276 
"HMX2 WILD-TYPE" "HMX2 WILD-TYPE" "HMX2 WILD-TYPE" "HMX2 WILD-TYPE" 
    TCGA-F2-A44G     TCGA-F2-A44H     TCGA-FB-A4P5     TCGA-FB-A4P6 
"HMX2 WILD-TYPE" "HMX2 WILD-TYPE" "HMX2 WILD-TYPE" "HMX2 WILD-TYPE" 
    TCGA-FB-A545     TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-FB-A7DR 
"HMX2 WILD-TYPE" "HMX2 WILD-TYPE" "HMX2 WILD-TYPE" "HMX2 WILD-TYPE" 
    TCGA-FZ-5920     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-H6-8124 
"HMX2 WILD-TYPE" "HMX2 WILD-TYPE" "HMX2 WILD-TYPE" "HMX2 WILD-TYPE" 
    TCGA-H6-A45N     TCGA-H8-A6C1     TCGA-HZ-7289     TCGA-HZ-7918 
"HMX2 WILD-TYPE" "HMX2 WILD-TYPE" "HMX2 WILD-TYPE" "HMX2 WILD-TYPE" 
    TCGA-HZ-7919     TCGA-HZ-7922     TCGA-HZ-7923     TCGA-HZ-7924 
"HMX2 WILD-TYPE" "HMX2 WILD-TYPE" "HMX2 WILD-TYPE" "HMX2 WILD-TYPE" 
    TCGA-HZ-7925     TCGA-HZ-7926     TCGA-HZ-8001     TCGA-HZ-8002 
"HMX2 WILD-TYPE" "HMX2 WILD-TYPE" "HMX2 WILD-TYPE" "HMX2 WILD-TYPE" 
    TCGA-HZ-8003     TCGA-HZ-8005     TCGA-HZ-8315     TCGA-HZ-8317 
"HMX2 WILD-TYPE" "HMX2 WILD-TYPE" "HMX2 WILD-TYPE"   "HMX2 MUTATED" 
    TCGA-HZ-8636     TCGA-HZ-8638     TCGA-HZ-A49G     TCGA-HZ-A49H 
"HMX2 WILD-TYPE" "HMX2 WILD-TYPE" "HMX2 WILD-TYPE" "HMX2 WILD-TYPE" 
    TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-IB-7644     TCGA-IB-7645 
"HMX2 WILD-TYPE" "HMX2 WILD-TYPE" "HMX2 WILD-TYPE" "HMX2 WILD-TYPE" 
    TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7651 
"HMX2 WILD-TYPE" "HMX2 WILD-TYPE" "HMX2 WILD-TYPE"   "HMX2 MUTATED" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887 
"HMX2 WILD-TYPE" "HMX2 WILD-TYPE" "HMX2 WILD-TYPE" "HMX2 WILD-TYPE" 
    TCGA-IB-7888     TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891 
  "HMX2 MUTATED" "HMX2 WILD-TYPE" "HMX2 WILD-TYPE" "HMX2 WILD-TYPE" 
    TCGA-IB-7893     TCGA-IB-7897     TCGA-IB-8126     TCGA-IB-8127 
"HMX2 WILD-TYPE" "HMX2 WILD-TYPE"   "HMX2 MUTATED" "HMX2 WILD-TYPE" 
    TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS 
"HMX2 WILD-TYPE" "HMX2 WILD-TYPE" "HMX2 WILD-TYPE" "HMX2 WILD-TYPE" 
    TCGA-IB-A5ST     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
"HMX2 WILD-TYPE" "HMX2 WILD-TYPE" "HMX2 WILD-TYPE" "HMX2 WILD-TYPE" 
    TCGA-PZ-A5RE     TCGA-Q3-A5QY     TCGA-US-A779     TCGA-US-A77E 
"HMX2 WILD-TYPE" "HMX2 WILD-TYPE" "HMX2 WILD-TYPE" "HMX2 WILD-TYPE" 
    TCGA-US-A77J 
"HMX2 WILD-TYPE" 
    TCGA-F2-6879     TCGA-F2-6880     TCGA-F2-7273     TCGA-F2-7276 
"HMX2 WILD-TYPE" "HMX2 WILD-TYPE" "HMX2 WILD-TYPE" "HMX2 WILD-TYPE" 
    TCGA-F2-A44G     TCGA-F2-A44H     TCGA-FB-A4P5     TCGA-FB-A4P6 
"HMX2 WILD-TYPE" "HMX2 WILD-TYPE" "HMX2 WILD-TYPE" "HMX2 WILD-TYPE" 
    TCGA-FB-A545     TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-FB-A7DR 
"HMX2 WILD-TYPE" "HMX2 WILD-TYPE" "HMX2 WILD-TYPE" "HMX2 WILD-TYPE" 
    TCGA-FZ-5920     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-H6-8124 
"HMX2 WILD-TYPE" "HMX2 WILD-TYPE" "HMX2 WILD-TYPE" "HMX2 WILD-TYPE" 
    TCGA-H6-A45N     TCGA-H8-A6C1     TCGA-HZ-7289     TCGA-HZ-7918 
"HMX2 WILD-TYPE" "HMX2 WILD-TYPE" "HMX2 WILD-TYPE" "HMX2 WILD-TYPE" 
    TCGA-HZ-7919     TCGA-HZ-7922     TCGA-HZ-7923     TCGA-HZ-7924 
"HMX2 WILD-TYPE" "HMX2 WILD-TYPE" "HMX2 WILD-TYPE" "HMX2 WILD-TYPE" 
    TCGA-HZ-7925     TCGA-HZ-7926     TCGA-HZ-8001     TCGA-HZ-8002 
"HMX2 WILD-TYPE" "HMX2 WILD-TYPE" "HMX2 WILD-TYPE" "HMX2 WILD-TYPE" 
    TCGA-HZ-8003     TCGA-HZ-8005     TCGA-HZ-8315     TCGA-HZ-8317 
"HMX2 WILD-TYPE" "HMX2 WILD-TYPE" "HMX2 WILD-TYPE"   "HMX2 MUTATED" 
    TCGA-HZ-8636     TCGA-HZ-8638     TCGA-HZ-A49G     TCGA-HZ-A49H 
"HMX2 WILD-TYPE" "HMX2 WILD-TYPE" "HMX2 WILD-TYPE" "HMX2 WILD-TYPE" 
    TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-IB-7644     TCGA-IB-7645 
"HMX2 WILD-TYPE" "HMX2 WILD-TYPE" "HMX2 WILD-TYPE" "HMX2 WILD-TYPE" 
    TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7651 
"HMX2 WILD-TYPE" "HMX2 WILD-TYPE" "HMX2 WILD-TYPE"   "HMX2 MUTATED" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887 
"HMX2 WILD-TYPE" "HMX2 WILD-TYPE" "HMX2 WILD-TYPE" "HMX2 WILD-TYPE" 
    TCGA-IB-7888     TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891 
  "HMX2 MUTATED" "HMX2 WILD-TYPE" "HMX2 WILD-TYPE" "HMX2 WILD-TYPE" 
    TCGA-IB-7893     TCGA-IB-7897     TCGA-IB-8126     TCGA-IB-8127 
"HMX2 WILD-TYPE" "HMX2 WILD-TYPE"   "HMX2 MUTATED" "HMX2 WILD-TYPE" 
    TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS 
"HMX2 WILD-TYPE" "HMX2 WILD-TYPE" "HMX2 WILD-TYPE" "HMX2 WILD-TYPE" 
    TCGA-IB-A5ST     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
"HMX2 WILD-TYPE" "HMX2 WILD-TYPE" "HMX2 WILD-TYPE" "HMX2 WILD-TYPE" 
    TCGA-PZ-A5RE     TCGA-Q3-A5QY     TCGA-US-A779     TCGA-US-A77E 
"HMX2 WILD-TYPE" "HMX2 WILD-TYPE" "HMX2 WILD-TYPE" "HMX2 WILD-TYPE" 
    TCGA-US-A77J 
"HMX2 WILD-TYPE" 
    TCGA-F2-6879     TCGA-F2-6880     TCGA-F2-7273     TCGA-F2-7276 
"HMX2 WILD-TYPE" "HMX2 WILD-TYPE" "HMX2 WILD-TYPE" "HMX2 WILD-TYPE" 
    TCGA-F2-A44G     TCGA-F2-A44H     TCGA-FB-A4P5     TCGA-FB-A4P6 
"HMX2 WILD-TYPE" "HMX2 WILD-TYPE" "HMX2 WILD-TYPE" "HMX2 WILD-TYPE" 
    TCGA-FB-A545     TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-FB-A7DR 
"HMX2 WILD-TYPE" "HMX2 WILD-TYPE" "HMX2 WILD-TYPE" "HMX2 WILD-TYPE" 
    TCGA-FZ-5920     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-H6-8124 
"HMX2 WILD-TYPE" "HMX2 WILD-TYPE" "HMX2 WILD-TYPE" "HMX2 WILD-TYPE" 
    TCGA-H6-A45N     TCGA-H8-A6C1     TCGA-HZ-7289     TCGA-HZ-7918 
"HMX2 WILD-TYPE" "HMX2 WILD-TYPE" "HMX2 WILD-TYPE" "HMX2 WILD-TYPE" 
    TCGA-HZ-7919     TCGA-HZ-7922     TCGA-HZ-7923     TCGA-HZ-7924 
"HMX2 WILD-TYPE" "HMX2 WILD-TYPE" "HMX2 WILD-TYPE" "HMX2 WILD-TYPE" 
    TCGA-HZ-7925     TCGA-HZ-7926     TCGA-HZ-8001     TCGA-HZ-8002 
"HMX2 WILD-TYPE" "HMX2 WILD-TYPE" "HMX2 WILD-TYPE" "HMX2 WILD-TYPE" 
    TCGA-HZ-8003     TCGA-HZ-8005     TCGA-HZ-8315     TCGA-HZ-8317 
"HMX2 WILD-TYPE" "HMX2 WILD-TYPE" "HMX2 WILD-TYPE"   "HMX2 MUTATED" 
    TCGA-HZ-8636     TCGA-HZ-8638     TCGA-HZ-A49G     TCGA-HZ-A49H 
"HMX2 WILD-TYPE" "HMX2 WILD-TYPE" "HMX2 WILD-TYPE" "HMX2 WILD-TYPE" 
    TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-IB-7644     TCGA-IB-7645 
"HMX2 WILD-TYPE" "HMX2 WILD-TYPE" "HMX2 WILD-TYPE" "HMX2 WILD-TYPE" 
    TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7651 
"HMX2 WILD-TYPE" "HMX2 WILD-TYPE" "HMX2 WILD-TYPE"   "HMX2 MUTATED" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887 
"HMX2 WILD-TYPE" "HMX2 WILD-TYPE" "HMX2 WILD-TYPE" "HMX2 WILD-TYPE" 
    TCGA-IB-7888     TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891 
  "HMX2 MUTATED" "HMX2 WILD-TYPE" "HMX2 WILD-TYPE" "HMX2 WILD-TYPE" 
    TCGA-IB-7893     TCGA-IB-7897     TCGA-IB-8126     TCGA-IB-8127 
"HMX2 WILD-TYPE" "HMX2 WILD-TYPE"   "HMX2 MUTATED" "HMX2 WILD-TYPE" 
    TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS 
"HMX2 WILD-TYPE" "HMX2 WILD-TYPE" "HMX2 WILD-TYPE" "HMX2 WILD-TYPE" 
    TCGA-IB-A5ST     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
"HMX2 WILD-TYPE" "HMX2 WILD-TYPE" "HMX2 WILD-TYPE" "HMX2 WILD-TYPE" 
    TCGA-PZ-A5RE     TCGA-Q3-A5QY     TCGA-US-A779     TCGA-US-A77E 
"HMX2 WILD-TYPE" "HMX2 WILD-TYPE" "HMX2 WILD-TYPE" "HMX2 WILD-TYPE" 
    TCGA-US-A77J 
"HMX2 WILD-TYPE" 
[1] "hr=" "2"  
D251V2, continuous
                vv
clus             STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  HMX2 MUTATED          0        0         1         3         1        0
  HMX2 WILD-TYPE        1        4        10        48         1        3
D251V3, multiclass
                vv
clus             T1+T2 T3+T4
  HMX2 MUTATED       0     5
  HMX2 WILD-TYPE     6    61
D251V4, multiclass
       clus
vv      HMX2 MUTATED HMX2 WILD-TYPE
  T1+T2            0              6
  T3+T4            5             61
D251V5, binary
                cls
clus              0  1
  HMX2 MUTATED    1  4
  HMX2 WILD-TYPE 16 50
[1] "tbl2"
                cls
clus             [,1] [,2]
  HMX2 MUTATED      1    4
  HMX2 WILD-TYPE   16   50
   clus
vv  HMX2 MUTATED HMX2 WILD-TYPE
  0            1             16
  1            4             50
                vv
clus             M0 M1 MX
  HMX2 MUTATED    3  0  2
  HMX2 WILD-TYPE 36  3 28
D251V6, multiclass
    clus
vv   HMX2 MUTATED HMX2 WILD-TYPE
  M0            3             36
  M1            0              3
  MX            2             28
D251V7, binary
                cls
clus              0  1
  HMX2 MUTATED    5  0
  HMX2 WILD-TYPE 31 36
[1] "tbl2"
                cls
clus             [,1] [,2]
  HMX2 MUTATED      5    0
  HMX2 WILD-TYPE   31   36
        clus
vv       HMX2 MUTATED HMX2 WILD-TYPE
  FEMALE            5             31
  MALE              0             36
                vv
clus             PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  HMX2 MUTATED                                     5
  HMX2 WILD-TYPE                                  60
                vv
clus             PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  HMX2 MUTATED                                       0
  HMX2 WILD-TYPE                                     4
                vv
clus             PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  HMX2 MUTATED                                                  0
  HMX2 WILD-TYPE                                                2
D251V8, multiclass
                                                  clus
vv                                                 HMX2 MUTATED HMX2 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                         5             60
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                       0              4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA            0              2
D251V9, continuous
[1] "Remove cluster labels:" "HMX2 MUTATED"          
clus
  HMX2 MUTATED HMX2 WILD-TYPE 
             2             20 
    TCGA-F2-6880     TCGA-FB-A4P5     TCGA-FB-A4P6     TCGA-FB-A5VM 
"HMX2 WILD-TYPE" "HMX2 WILD-TYPE" "HMX2 WILD-TYPE" "HMX2 WILD-TYPE" 
    TCGA-FB-A78T     TCGA-FB-A7DR     TCGA-H6-8124     TCGA-H6-A45N 
"HMX2 WILD-TYPE" "HMX2 WILD-TYPE" "HMX2 WILD-TYPE" "HMX2 WILD-TYPE" 
    TCGA-H8-A6C1     TCGA-IB-7644     TCGA-IB-7649     TCGA-IB-7885 
"HMX2 WILD-TYPE" "HMX2 WILD-TYPE" "HMX2 WILD-TYPE" "HMX2 WILD-TYPE" 
    TCGA-IB-7886     TCGA-IB-7887     TCGA-IB-7891     TCGA-IB-8127 
"HMX2 WILD-TYPE" "HMX2 WILD-TYPE" "HMX2 WILD-TYPE" "HMX2 WILD-TYPE" 
    TCGA-IB-A5SS     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
"HMX2 WILD-TYPE" "HMX2 WILD-TYPE" "HMX2 WILD-TYPE" "HMX2 WILD-TYPE" 
D251V10, continuous
[1] "Remove cluster labels:" "HMX2 MUTATED"          
clus
  HMX2 MUTATED HMX2 WILD-TYPE 
             2             17 
    TCGA-FB-A4P5     TCGA-FB-A4P6     TCGA-FB-A5VM     TCGA-FB-A78T 
"HMX2 WILD-TYPE" "HMX2 WILD-TYPE" "HMX2 WILD-TYPE" "HMX2 WILD-TYPE" 
    TCGA-FB-A7DR     TCGA-H6-8124     TCGA-H8-A6C1     TCGA-IB-7644 
"HMX2 WILD-TYPE" "HMX2 WILD-TYPE" "HMX2 WILD-TYPE" "HMX2 WILD-TYPE" 
    TCGA-IB-7649     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7891 
"HMX2 WILD-TYPE" "HMX2 WILD-TYPE" "HMX2 WILD-TYPE" "HMX2 WILD-TYPE" 
    TCGA-IB-8127     TCGA-IB-A5SS     TCGA-IB-A6UG     TCGA-LB-A7SX 
"HMX2 WILD-TYPE" "HMX2 WILD-TYPE" "HMX2 WILD-TYPE" "HMX2 WILD-TYPE" 
    TCGA-OE-A75W 
"HMX2 WILD-TYPE" 
                vv
clus             R0 R1 RX
  HMX2 MUTATED    3  2  0
  HMX2 WILD-TYPE 39 22  2
D251V11, multiclass
    clus
vv   HMX2 MUTATED HMX2 WILD-TYPE
  R0            3             39
  R1            2             22
  RX            0              2
D251V12, continuous

Clustering(252) Variable = C19ORF47 MUTATION ANALYSIS
D252V1, survival
                    sevent
clus2                 0  1
  C19ORF47 MUTATED    2  2
  C19ORF47 WILD-TYPE 38 27
  C19ORF47 MUTATED C19ORF47 WILD-TYPE 
                 4                 65 
  C19ORF47 MUTATED C19ORF47 WILD-TYPE 
                 2                 27 
$`C19ORF47 MUTATED`
TCGA-F2-A44H TCGA-HZ-8003 TCGA-HZ-8005 TCGA-IB-7651 
       19.27         0.69         3.95        19.82 

$`C19ORF47 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-FB-A4P5 
       10.98         9.70        11.84         7.10         5.03         0.13 
TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR TCGA-FZ-5920 
       11.93        12.66         2.47         0.03         5.46         2.01 
TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7289 
       36.20        20.81        12.89         7.66        13.02         7.89 
TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 
        0.92         0.66         0.13         0.26        12.13        11.87 
TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8636 
        0.26         0.62         0.79         0.92         0.53         0.16 
TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 
        2.99         0.76         0.95         6.38         1.51        11.41 
TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7652 TCGA-IB-7885 
       49.38         4.77        21.90        15.35        15.65        27.98 
TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 
        4.04         3.62        43.79        15.81        19.66        16.04 
TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP 
        3.85        15.98         0.56        17.16        10.82         9.86 
TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W 
        7.20        15.12         0.26         1.35         4.18         3.62 
TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
        8.12        13.68        16.80        14.14        18.67 

  C19ORF47 MUTATED C19ORF47 WILD-TYPE 
              0.69               0.03 
  C19ORF47 MUTATED C19ORF47 WILD-TYPE 
             19.82              49.38 
  C19ORF47 MUTATED C19ORF47 WILD-TYPE 
             11.61               7.66 
[1] "0.7 - 19.8 (11.6)" "0.0 - 49.4 (7.7)" 
        TCGA-F2-6879         TCGA-F2-6880         TCGA-F2-7273 
"C19ORF47 WILD-TYPE" "C19ORF47 WILD-TYPE" "C19ORF47 WILD-TYPE" 
        TCGA-F2-7276         TCGA-F2-A44G         TCGA-F2-A44H 
"C19ORF47 WILD-TYPE" "C19ORF47 WILD-TYPE"   "C19ORF47 MUTATED" 
        TCGA-FB-A4P5         TCGA-FB-A4P6         TCGA-FB-A545 
"C19ORF47 WILD-TYPE" "C19ORF47 WILD-TYPE" "C19ORF47 WILD-TYPE" 
        TCGA-FB-A5VM         TCGA-FB-A78T         TCGA-FB-A7DR 
"C19ORF47 WILD-TYPE" "C19ORF47 WILD-TYPE" "C19ORF47 WILD-TYPE" 
        TCGA-FZ-5920         TCGA-FZ-5922         TCGA-FZ-5923 
"C19ORF47 WILD-TYPE" "C19ORF47 WILD-TYPE" "C19ORF47 WILD-TYPE" 
        TCGA-H6-8124         TCGA-H6-A45N         TCGA-H8-A6C1 
"C19ORF47 WILD-TYPE" "C19ORF47 WILD-TYPE" "C19ORF47 WILD-TYPE" 
        TCGA-HZ-7289         TCGA-HZ-7918         TCGA-HZ-7919 
"C19ORF47 WILD-TYPE" "C19ORF47 WILD-TYPE" "C19ORF47 WILD-TYPE" 
        TCGA-HZ-7922         TCGA-HZ-7923         TCGA-HZ-7924 
"C19ORF47 WILD-TYPE" "C19ORF47 WILD-TYPE" "C19ORF47 WILD-TYPE" 
        TCGA-HZ-7925         TCGA-HZ-7926         TCGA-HZ-8001 
"C19ORF47 WILD-TYPE" "C19ORF47 WILD-TYPE" "C19ORF47 WILD-TYPE" 
        TCGA-HZ-8002         TCGA-HZ-8003         TCGA-HZ-8005 
"C19ORF47 WILD-TYPE"   "C19ORF47 MUTATED"   "C19ORF47 MUTATED" 
        TCGA-HZ-8315         TCGA-HZ-8317         TCGA-HZ-8636 
"C19ORF47 WILD-TYPE" "C19ORF47 WILD-TYPE" "C19ORF47 WILD-TYPE" 
        TCGA-HZ-8638         TCGA-HZ-A49G         TCGA-HZ-A49H 
"C19ORF47 WILD-TYPE" "C19ORF47 WILD-TYPE" "C19ORF47 WILD-TYPE" 
        TCGA-HZ-A4BH         TCGA-HZ-A4BK         TCGA-IB-7644 
"C19ORF47 WILD-TYPE" "C19ORF47 WILD-TYPE" "C19ORF47 WILD-TYPE" 
        TCGA-IB-7645         TCGA-IB-7646         TCGA-IB-7647 
"C19ORF47 WILD-TYPE" "C19ORF47 WILD-TYPE" "C19ORF47 WILD-TYPE" 
        TCGA-IB-7649         TCGA-IB-7651         TCGA-IB-7652 
"C19ORF47 WILD-TYPE"   "C19ORF47 MUTATED" "C19ORF47 WILD-TYPE" 
        TCGA-IB-7885         TCGA-IB-7886         TCGA-IB-7887 
"C19ORF47 WILD-TYPE" "C19ORF47 WILD-TYPE" "C19ORF47 WILD-TYPE" 
        TCGA-IB-7888         TCGA-IB-7889         TCGA-IB-7890 
"C19ORF47 WILD-TYPE" "C19ORF47 WILD-TYPE" "C19ORF47 WILD-TYPE" 
        TCGA-IB-7891         TCGA-IB-7893         TCGA-IB-7897 
"C19ORF47 WILD-TYPE" "C19ORF47 WILD-TYPE" "C19ORF47 WILD-TYPE" 
        TCGA-IB-8126         TCGA-IB-8127         TCGA-IB-A5SO 
"C19ORF47 WILD-TYPE" "C19ORF47 WILD-TYPE" "C19ORF47 WILD-TYPE" 
        TCGA-IB-A5SP         TCGA-IB-A5SQ         TCGA-IB-A5SS 
"C19ORF47 WILD-TYPE" "C19ORF47 WILD-TYPE" "C19ORF47 WILD-TYPE" 
        TCGA-IB-A5ST         TCGA-IB-A6UG         TCGA-LB-A7SX 
"C19ORF47 WILD-TYPE" "C19ORF47 WILD-TYPE" "C19ORF47 WILD-TYPE" 
        TCGA-OE-A75W         TCGA-PZ-A5RE         TCGA-Q3-A5QY 
"C19ORF47 WILD-TYPE" "C19ORF47 WILD-TYPE" "C19ORF47 WILD-TYPE" 
        TCGA-US-A779         TCGA-US-A77E         TCGA-US-A77J 
"C19ORF47 WILD-TYPE" "C19ORF47 WILD-TYPE" "C19ORF47 WILD-TYPE" 
        TCGA-F2-6879         TCGA-F2-6880         TCGA-F2-7273 
"C19ORF47 WILD-TYPE" "C19ORF47 WILD-TYPE" "C19ORF47 WILD-TYPE" 
        TCGA-F2-7276         TCGA-F2-A44G         TCGA-F2-A44H 
"C19ORF47 WILD-TYPE" "C19ORF47 WILD-TYPE"   "C19ORF47 MUTATED" 
        TCGA-FB-A4P5         TCGA-FB-A4P6         TCGA-FB-A545 
"C19ORF47 WILD-TYPE" "C19ORF47 WILD-TYPE" "C19ORF47 WILD-TYPE" 
        TCGA-FB-A5VM         TCGA-FB-A78T         TCGA-FB-A7DR 
"C19ORF47 WILD-TYPE" "C19ORF47 WILD-TYPE" "C19ORF47 WILD-TYPE" 
        TCGA-FZ-5920         TCGA-FZ-5922         TCGA-FZ-5923 
"C19ORF47 WILD-TYPE" "C19ORF47 WILD-TYPE" "C19ORF47 WILD-TYPE" 
        TCGA-H6-8124         TCGA-H6-A45N         TCGA-H8-A6C1 
"C19ORF47 WILD-TYPE" "C19ORF47 WILD-TYPE" "C19ORF47 WILD-TYPE" 
        TCGA-HZ-7289         TCGA-HZ-7918         TCGA-HZ-7919 
"C19ORF47 WILD-TYPE" "C19ORF47 WILD-TYPE" "C19ORF47 WILD-TYPE" 
        TCGA-HZ-7922         TCGA-HZ-7923         TCGA-HZ-7924 
"C19ORF47 WILD-TYPE" "C19ORF47 WILD-TYPE" "C19ORF47 WILD-TYPE" 
        TCGA-HZ-7925         TCGA-HZ-7926         TCGA-HZ-8001 
"C19ORF47 WILD-TYPE" "C19ORF47 WILD-TYPE" "C19ORF47 WILD-TYPE" 
        TCGA-HZ-8002         TCGA-HZ-8003         TCGA-HZ-8005 
"C19ORF47 WILD-TYPE"   "C19ORF47 MUTATED"   "C19ORF47 MUTATED" 
        TCGA-HZ-8315         TCGA-HZ-8317         TCGA-HZ-8636 
"C19ORF47 WILD-TYPE" "C19ORF47 WILD-TYPE" "C19ORF47 WILD-TYPE" 
        TCGA-HZ-8638         TCGA-HZ-A49G         TCGA-HZ-A49H 
"C19ORF47 WILD-TYPE" "C19ORF47 WILD-TYPE" "C19ORF47 WILD-TYPE" 
        TCGA-HZ-A4BH         TCGA-HZ-A4BK         TCGA-IB-7644 
"C19ORF47 WILD-TYPE" "C19ORF47 WILD-TYPE" "C19ORF47 WILD-TYPE" 
        TCGA-IB-7645         TCGA-IB-7646         TCGA-IB-7647 
"C19ORF47 WILD-TYPE" "C19ORF47 WILD-TYPE" "C19ORF47 WILD-TYPE" 
        TCGA-IB-7649         TCGA-IB-7651         TCGA-IB-7652 
"C19ORF47 WILD-TYPE"   "C19ORF47 MUTATED" "C19ORF47 WILD-TYPE" 
        TCGA-IB-7885         TCGA-IB-7886         TCGA-IB-7887 
"C19ORF47 WILD-TYPE" "C19ORF47 WILD-TYPE" "C19ORF47 WILD-TYPE" 
        TCGA-IB-7888         TCGA-IB-7889         TCGA-IB-7890 
"C19ORF47 WILD-TYPE" "C19ORF47 WILD-TYPE" "C19ORF47 WILD-TYPE" 
        TCGA-IB-7891         TCGA-IB-7893         TCGA-IB-7897 
"C19ORF47 WILD-TYPE" "C19ORF47 WILD-TYPE" "C19ORF47 WILD-TYPE" 
        TCGA-IB-8126         TCGA-IB-8127         TCGA-IB-A5SO 
"C19ORF47 WILD-TYPE" "C19ORF47 WILD-TYPE" "C19ORF47 WILD-TYPE" 
        TCGA-IB-A5SP         TCGA-IB-A5SQ         TCGA-IB-A5SS 
"C19ORF47 WILD-TYPE" "C19ORF47 WILD-TYPE" "C19ORF47 WILD-TYPE" 
        TCGA-IB-A5ST         TCGA-IB-A6UG         TCGA-LB-A7SX 
"C19ORF47 WILD-TYPE" "C19ORF47 WILD-TYPE" "C19ORF47 WILD-TYPE" 
        TCGA-OE-A75W         TCGA-PZ-A5RE         TCGA-Q3-A5QY 
"C19ORF47 WILD-TYPE" "C19ORF47 WILD-TYPE" "C19ORF47 WILD-TYPE" 
        TCGA-US-A779         TCGA-US-A77E         TCGA-US-A77J 
"C19ORF47 WILD-TYPE" "C19ORF47 WILD-TYPE" "C19ORF47 WILD-TYPE" 
        TCGA-F2-6879         TCGA-F2-6880         TCGA-F2-7273 
"C19ORF47 WILD-TYPE" "C19ORF47 WILD-TYPE" "C19ORF47 WILD-TYPE" 
        TCGA-F2-7276         TCGA-F2-A44G         TCGA-F2-A44H 
"C19ORF47 WILD-TYPE" "C19ORF47 WILD-TYPE"   "C19ORF47 MUTATED" 
        TCGA-FB-A4P5         TCGA-FB-A4P6         TCGA-FB-A545 
"C19ORF47 WILD-TYPE" "C19ORF47 WILD-TYPE" "C19ORF47 WILD-TYPE" 
        TCGA-FB-A5VM         TCGA-FB-A78T         TCGA-FB-A7DR 
"C19ORF47 WILD-TYPE" "C19ORF47 WILD-TYPE" "C19ORF47 WILD-TYPE" 
        TCGA-FZ-5920         TCGA-FZ-5922         TCGA-FZ-5923 
"C19ORF47 WILD-TYPE" "C19ORF47 WILD-TYPE" "C19ORF47 WILD-TYPE" 
        TCGA-H6-8124         TCGA-H6-A45N         TCGA-H8-A6C1 
"C19ORF47 WILD-TYPE" "C19ORF47 WILD-TYPE" "C19ORF47 WILD-TYPE" 
        TCGA-HZ-7289         TCGA-HZ-7918         TCGA-HZ-7919 
"C19ORF47 WILD-TYPE" "C19ORF47 WILD-TYPE" "C19ORF47 WILD-TYPE" 
        TCGA-HZ-7922         TCGA-HZ-7923         TCGA-HZ-7924 
"C19ORF47 WILD-TYPE" "C19ORF47 WILD-TYPE" "C19ORF47 WILD-TYPE" 
        TCGA-HZ-7925         TCGA-HZ-7926         TCGA-HZ-8001 
"C19ORF47 WILD-TYPE" "C19ORF47 WILD-TYPE" "C19ORF47 WILD-TYPE" 
        TCGA-HZ-8002         TCGA-HZ-8003         TCGA-HZ-8005 
"C19ORF47 WILD-TYPE"   "C19ORF47 MUTATED"   "C19ORF47 MUTATED" 
        TCGA-HZ-8315         TCGA-HZ-8317         TCGA-HZ-8636 
"C19ORF47 WILD-TYPE" "C19ORF47 WILD-TYPE" "C19ORF47 WILD-TYPE" 
        TCGA-HZ-8638         TCGA-HZ-A49G         TCGA-HZ-A49H 
"C19ORF47 WILD-TYPE" "C19ORF47 WILD-TYPE" "C19ORF47 WILD-TYPE" 
        TCGA-HZ-A4BH         TCGA-HZ-A4BK         TCGA-IB-7644 
"C19ORF47 WILD-TYPE" "C19ORF47 WILD-TYPE" "C19ORF47 WILD-TYPE" 
        TCGA-IB-7645         TCGA-IB-7646         TCGA-IB-7647 
"C19ORF47 WILD-TYPE" "C19ORF47 WILD-TYPE" "C19ORF47 WILD-TYPE" 
        TCGA-IB-7649         TCGA-IB-7651         TCGA-IB-7652 
"C19ORF47 WILD-TYPE"   "C19ORF47 MUTATED" "C19ORF47 WILD-TYPE" 
        TCGA-IB-7885         TCGA-IB-7886         TCGA-IB-7887 
"C19ORF47 WILD-TYPE" "C19ORF47 WILD-TYPE" "C19ORF47 WILD-TYPE" 
        TCGA-IB-7888         TCGA-IB-7889         TCGA-IB-7890 
"C19ORF47 WILD-TYPE" "C19ORF47 WILD-TYPE" "C19ORF47 WILD-TYPE" 
        TCGA-IB-7891         TCGA-IB-7893         TCGA-IB-7897 
"C19ORF47 WILD-TYPE" "C19ORF47 WILD-TYPE" "C19ORF47 WILD-TYPE" 
        TCGA-IB-8126         TCGA-IB-8127         TCGA-IB-A5SO 
"C19ORF47 WILD-TYPE" "C19ORF47 WILD-TYPE" "C19ORF47 WILD-TYPE" 
        TCGA-IB-A5SP         TCGA-IB-A5SQ         TCGA-IB-A5SS 
"C19ORF47 WILD-TYPE" "C19ORF47 WILD-TYPE" "C19ORF47 WILD-TYPE" 
        TCGA-IB-A5ST         TCGA-IB-A6UG         TCGA-LB-A7SX 
"C19ORF47 WILD-TYPE" "C19ORF47 WILD-TYPE" "C19ORF47 WILD-TYPE" 
        TCGA-OE-A75W         TCGA-PZ-A5RE         TCGA-Q3-A5QY 
"C19ORF47 WILD-TYPE" "C19ORF47 WILD-TYPE" "C19ORF47 WILD-TYPE" 
        TCGA-US-A779         TCGA-US-A77E         TCGA-US-A77J 
"C19ORF47 WILD-TYPE" "C19ORF47 WILD-TYPE" "C19ORF47 WILD-TYPE" 
[1] "hr=" "1.1"
D252V2, continuous
                    vv
clus                 STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  C19ORF47 MUTATED          0        0         1         3         0        0
  C19ORF47 WILD-TYPE        1        4        10        48         2        3
D252V3, multiclass
                    vv
clus                 T1+T2 T3+T4
  C19ORF47 MUTATED       0     4
  C19ORF47 WILD-TYPE     6    62
D252V4, multiclass
       clus
vv      C19ORF47 MUTATED C19ORF47 WILD-TYPE
  T1+T2                0                  6
  T3+T4                4                 62
D252V5, binary
                    cls
clus                  0  1
  C19ORF47 MUTATED    1  3
  C19ORF47 WILD-TYPE 16 51
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  C19ORF47 MUTATED      1    3
  C19ORF47 WILD-TYPE   16   51
   clus
vv  C19ORF47 MUTATED C19ORF47 WILD-TYPE
  0                1                 16
  1                3                 51
                    vv
clus                 M0 M1 MX
  C19ORF47 MUTATED    2  0  2
  C19ORF47 WILD-TYPE 37  3 28
D252V6, multiclass
    clus
vv   C19ORF47 MUTATED C19ORF47 WILD-TYPE
  M0                2                 37
  M1                0                  3
  MX                2                 28
D252V7, binary
                    cls
clus                  0  1
  C19ORF47 MUTATED    2  2
  C19ORF47 WILD-TYPE 34 34
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  C19ORF47 MUTATED      2    2
  C19ORF47 WILD-TYPE   34   34
        clus
vv       C19ORF47 MUTATED C19ORF47 WILD-TYPE
  FEMALE                2                 34
  MALE                  2                 34
                    vv
clus                 PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  C19ORF47 MUTATED                                     4
  C19ORF47 WILD-TYPE                                  61
                    vv
clus                 PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  C19ORF47 MUTATED                                       0
  C19ORF47 WILD-TYPE                                     4
                    vv
clus                 PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  C19ORF47 MUTATED                                                  0
  C19ORF47 WILD-TYPE                                                2
D252V8, multiclass
                                                  clus
vv                                                 C19ORF47 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                             4
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                           0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                0
                                                  clus
vv                                                 C19ORF47 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                              61
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                             4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                  2
D252V9, continuous
[1] "Remove cluster labels:" "C19ORF47 MUTATED"      
clus
  C19ORF47 MUTATED C19ORF47 WILD-TYPE 
                 1                 21 
        TCGA-F2-6880         TCGA-FB-A4P5         TCGA-FB-A4P6 
"C19ORF47 WILD-TYPE" "C19ORF47 WILD-TYPE" "C19ORF47 WILD-TYPE" 
        TCGA-FB-A5VM         TCGA-FB-A78T         TCGA-FB-A7DR 
"C19ORF47 WILD-TYPE" "C19ORF47 WILD-TYPE" "C19ORF47 WILD-TYPE" 
        TCGA-H6-8124         TCGA-H6-A45N         TCGA-H8-A6C1 
"C19ORF47 WILD-TYPE" "C19ORF47 WILD-TYPE" "C19ORF47 WILD-TYPE" 
        TCGA-IB-7644         TCGA-IB-7649         TCGA-IB-7885 
"C19ORF47 WILD-TYPE" "C19ORF47 WILD-TYPE" "C19ORF47 WILD-TYPE" 
        TCGA-IB-7886         TCGA-IB-7887         TCGA-IB-7891 
"C19ORF47 WILD-TYPE" "C19ORF47 WILD-TYPE" "C19ORF47 WILD-TYPE" 
        TCGA-IB-8126         TCGA-IB-8127         TCGA-IB-A5SS 
"C19ORF47 WILD-TYPE" "C19ORF47 WILD-TYPE" "C19ORF47 WILD-TYPE" 
        TCGA-IB-A6UG         TCGA-LB-A7SX         TCGA-OE-A75W 
"C19ORF47 WILD-TYPE" "C19ORF47 WILD-TYPE" "C19ORF47 WILD-TYPE" 
D252V10, continuous
[1] "Remove cluster labels:" "C19ORF47 MUTATED"      
clus
  C19ORF47 MUTATED C19ORF47 WILD-TYPE 
                 1                 18 
        TCGA-FB-A4P5         TCGA-FB-A4P6         TCGA-FB-A5VM 
"C19ORF47 WILD-TYPE" "C19ORF47 WILD-TYPE" "C19ORF47 WILD-TYPE" 
        TCGA-FB-A78T         TCGA-FB-A7DR         TCGA-H6-8124 
"C19ORF47 WILD-TYPE" "C19ORF47 WILD-TYPE" "C19ORF47 WILD-TYPE" 
        TCGA-H8-A6C1         TCGA-IB-7644         TCGA-IB-7649 
"C19ORF47 WILD-TYPE" "C19ORF47 WILD-TYPE" "C19ORF47 WILD-TYPE" 
        TCGA-IB-7885         TCGA-IB-7886         TCGA-IB-7891 
"C19ORF47 WILD-TYPE" "C19ORF47 WILD-TYPE" "C19ORF47 WILD-TYPE" 
        TCGA-IB-8126         TCGA-IB-8127         TCGA-IB-A5SS 
"C19ORF47 WILD-TYPE" "C19ORF47 WILD-TYPE" "C19ORF47 WILD-TYPE" 
        TCGA-IB-A6UG         TCGA-LB-A7SX         TCGA-OE-A75W 
"C19ORF47 WILD-TYPE" "C19ORF47 WILD-TYPE" "C19ORF47 WILD-TYPE" 
                    vv
clus                 R0 R1 RX
  C19ORF47 MUTATED    3  1  0
  C19ORF47 WILD-TYPE 39 23  2
D252V11, multiclass
    clus
vv   C19ORF47 MUTATED C19ORF47 WILD-TYPE
  R0                3                 39
  R1                1                 23
  RX                0                  2
D252V12, continuous

Clustering(253) Variable = NARG2 MUTATION ANALYSIS
D253V1, survival
                 sevent
clus2              0  1
  NARG2 MUTATED    7  4
  NARG2 WILD-TYPE 33 25
  NARG2 MUTATED NARG2 WILD-TYPE 
             11              58 
  NARG2 MUTATED NARG2 WILD-TYPE 
              4              25 
$`NARG2 MUTATED`
TCGA-F2-6879 TCGA-FB-A78T TCGA-HZ-7289 TCGA-HZ-7919 TCGA-HZ-7923 TCGA-HZ-7924 
       10.98         0.03         7.89         0.66         0.26        12.13 
TCGA-HZ-8315 TCGA-HZ-A4BK TCGA-IB-7651 TCGA-IB-7887 TCGA-IB-A5SS 
        0.92         1.51        19.82         3.62        15.12 

$`NARG2 WILD-TYPE`
TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H TCGA-FB-A4P5 
        9.70        11.84         7.10         5.03        19.27         0.13 
TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A7DR TCGA-FZ-5920 TCGA-FZ-5922 
       11.93        12.66         2.47         5.46         2.01        36.20 
TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7918 TCGA-HZ-7922 
       20.81        12.89         7.66        13.02         0.92         0.13 
TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 
       11.87         0.26         0.62         0.79         0.69         3.95 
TCGA-HZ-8317 TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH 
        0.53         0.16         2.99         0.76         0.95         6.38 
TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7652 
       11.41        49.38         4.77        21.90        15.35        15.65 
TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 
       27.98         4.04        43.79        15.81        19.66        16.04 
TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP 
        3.85        15.98         0.56        17.16        10.82         9.86 
TCGA-IB-A5SQ TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W TCGA-PZ-A5RE 
        7.20         0.26         1.35         4.18         3.62         8.12 
TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
       13.68        16.80        14.14        18.67 

  NARG2 MUTATED NARG2 WILD-TYPE 
           0.03            0.13 
  NARG2 MUTATED NARG2 WILD-TYPE 
          19.82           49.38 
  NARG2 MUTATED NARG2 WILD-TYPE 
           3.62            7.89 
[1] "0.0 - 19.8 (3.6)" "0.1 - 49.4 (7.9)"
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
  "NARG2 MUTATED" "NARG2 WILD-TYPE" "NARG2 WILD-TYPE" "NARG2 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"NARG2 WILD-TYPE" "NARG2 WILD-TYPE" "NARG2 WILD-TYPE" "NARG2 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"NARG2 WILD-TYPE" "NARG2 WILD-TYPE"   "NARG2 MUTATED" "NARG2 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"NARG2 WILD-TYPE" "NARG2 WILD-TYPE" "NARG2 WILD-TYPE" "NARG2 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"NARG2 WILD-TYPE" "NARG2 WILD-TYPE"   "NARG2 MUTATED" "NARG2 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
  "NARG2 MUTATED" "NARG2 WILD-TYPE"   "NARG2 MUTATED"   "NARG2 MUTATED" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"NARG2 WILD-TYPE" "NARG2 WILD-TYPE" "NARG2 WILD-TYPE" "NARG2 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"NARG2 WILD-TYPE" "NARG2 WILD-TYPE"   "NARG2 MUTATED" "NARG2 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"NARG2 WILD-TYPE" "NARG2 WILD-TYPE" "NARG2 WILD-TYPE" "NARG2 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"NARG2 WILD-TYPE"   "NARG2 MUTATED" "NARG2 WILD-TYPE" "NARG2 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"NARG2 WILD-TYPE" "NARG2 WILD-TYPE" "NARG2 WILD-TYPE"   "NARG2 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"NARG2 WILD-TYPE" "NARG2 WILD-TYPE" "NARG2 WILD-TYPE"   "NARG2 MUTATED" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"NARG2 WILD-TYPE" "NARG2 WILD-TYPE" "NARG2 WILD-TYPE" "NARG2 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"NARG2 WILD-TYPE" "NARG2 WILD-TYPE" "NARG2 WILD-TYPE" "NARG2 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"NARG2 WILD-TYPE" "NARG2 WILD-TYPE" "NARG2 WILD-TYPE"   "NARG2 MUTATED" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"NARG2 WILD-TYPE" "NARG2 WILD-TYPE" "NARG2 WILD-TYPE" "NARG2 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"NARG2 WILD-TYPE" "NARG2 WILD-TYPE" "NARG2 WILD-TYPE" "NARG2 WILD-TYPE" 
     TCGA-US-A77J 
"NARG2 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
  "NARG2 MUTATED" "NARG2 WILD-TYPE" "NARG2 WILD-TYPE" "NARG2 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"NARG2 WILD-TYPE" "NARG2 WILD-TYPE" "NARG2 WILD-TYPE" "NARG2 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"NARG2 WILD-TYPE" "NARG2 WILD-TYPE"   "NARG2 MUTATED" "NARG2 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"NARG2 WILD-TYPE" "NARG2 WILD-TYPE" "NARG2 WILD-TYPE" "NARG2 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"NARG2 WILD-TYPE" "NARG2 WILD-TYPE"   "NARG2 MUTATED" "NARG2 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
  "NARG2 MUTATED" "NARG2 WILD-TYPE"   "NARG2 MUTATED"   "NARG2 MUTATED" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"NARG2 WILD-TYPE" "NARG2 WILD-TYPE" "NARG2 WILD-TYPE" "NARG2 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"NARG2 WILD-TYPE" "NARG2 WILD-TYPE"   "NARG2 MUTATED" "NARG2 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"NARG2 WILD-TYPE" "NARG2 WILD-TYPE" "NARG2 WILD-TYPE" "NARG2 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"NARG2 WILD-TYPE"   "NARG2 MUTATED" "NARG2 WILD-TYPE" "NARG2 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"NARG2 WILD-TYPE" "NARG2 WILD-TYPE" "NARG2 WILD-TYPE"   "NARG2 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"NARG2 WILD-TYPE" "NARG2 WILD-TYPE" "NARG2 WILD-TYPE"   "NARG2 MUTATED" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"NARG2 WILD-TYPE" "NARG2 WILD-TYPE" "NARG2 WILD-TYPE" "NARG2 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"NARG2 WILD-TYPE" "NARG2 WILD-TYPE" "NARG2 WILD-TYPE" "NARG2 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"NARG2 WILD-TYPE" "NARG2 WILD-TYPE" "NARG2 WILD-TYPE"   "NARG2 MUTATED" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"NARG2 WILD-TYPE" "NARG2 WILD-TYPE" "NARG2 WILD-TYPE" "NARG2 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"NARG2 WILD-TYPE" "NARG2 WILD-TYPE" "NARG2 WILD-TYPE" "NARG2 WILD-TYPE" 
     TCGA-US-A77J 
"NARG2 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
  "NARG2 MUTATED" "NARG2 WILD-TYPE" "NARG2 WILD-TYPE" "NARG2 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"NARG2 WILD-TYPE" "NARG2 WILD-TYPE" "NARG2 WILD-TYPE" "NARG2 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"NARG2 WILD-TYPE" "NARG2 WILD-TYPE"   "NARG2 MUTATED" "NARG2 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"NARG2 WILD-TYPE" "NARG2 WILD-TYPE" "NARG2 WILD-TYPE" "NARG2 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"NARG2 WILD-TYPE" "NARG2 WILD-TYPE"   "NARG2 MUTATED" "NARG2 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
  "NARG2 MUTATED" "NARG2 WILD-TYPE"   "NARG2 MUTATED"   "NARG2 MUTATED" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"NARG2 WILD-TYPE" "NARG2 WILD-TYPE" "NARG2 WILD-TYPE" "NARG2 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"NARG2 WILD-TYPE" "NARG2 WILD-TYPE"   "NARG2 MUTATED" "NARG2 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"NARG2 WILD-TYPE" "NARG2 WILD-TYPE" "NARG2 WILD-TYPE" "NARG2 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"NARG2 WILD-TYPE"   "NARG2 MUTATED" "NARG2 WILD-TYPE" "NARG2 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"NARG2 WILD-TYPE" "NARG2 WILD-TYPE" "NARG2 WILD-TYPE"   "NARG2 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"NARG2 WILD-TYPE" "NARG2 WILD-TYPE" "NARG2 WILD-TYPE"   "NARG2 MUTATED" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"NARG2 WILD-TYPE" "NARG2 WILD-TYPE" "NARG2 WILD-TYPE" "NARG2 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"NARG2 WILD-TYPE" "NARG2 WILD-TYPE" "NARG2 WILD-TYPE" "NARG2 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"NARG2 WILD-TYPE" "NARG2 WILD-TYPE" "NARG2 WILD-TYPE"   "NARG2 MUTATED" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"NARG2 WILD-TYPE" "NARG2 WILD-TYPE" "NARG2 WILD-TYPE" "NARG2 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"NARG2 WILD-TYPE" "NARG2 WILD-TYPE" "NARG2 WILD-TYPE" "NARG2 WILD-TYPE" 
     TCGA-US-A77J 
"NARG2 WILD-TYPE" 
[1] "hr=" "1.5"
D253V2, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  NARG2 MUTATED          0        0         3         8         0        0
  NARG2 WILD-TYPE        1        4         8        43         2        3
D253V3, multiclass
                 vv
clus              T1+T2 T3+T4
  NARG2 MUTATED       0    11
  NARG2 WILD-TYPE     6    55
D253V4, multiclass
       clus
vv      NARG2 MUTATED NARG2 WILD-TYPE
  T1+T2             0               6
  T3+T4            11              55
D253V5, binary
                 cls
clus               0  1
  NARG2 MUTATED    3  8
  NARG2 WILD-TYPE 14 46
[1] "tbl2"
                 cls
clus              [,1] [,2]
  NARG2 MUTATED      3    8
  NARG2 WILD-TYPE   14   46
   clus
vv  NARG2 MUTATED NARG2 WILD-TYPE
  0             3              14
  1             8              46
                 vv
clus              M0 M1 MX
  NARG2 MUTATED    6  0  5
  NARG2 WILD-TYPE 33  3 25
D253V6, multiclass
    clus
vv   NARG2 MUTATED NARG2 WILD-TYPE
  M0             6              33
  M1             0               3
  MX             5              25
D253V7, binary
                 cls
clus               0  1
  NARG2 MUTATED    7  4
  NARG2 WILD-TYPE 29 32
[1] "tbl2"
                 cls
clus              [,1] [,2]
  NARG2 MUTATED      7    4
  NARG2 WILD-TYPE   29   32
        clus
vv       NARG2 MUTATED NARG2 WILD-TYPE
  FEMALE             7              29
  MALE               4              32
                 vv
clus              PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  NARG2 MUTATED                                     8
  NARG2 WILD-TYPE                                  57
                 vv
clus              PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  NARG2 MUTATED                                       2
  NARG2 WILD-TYPE                                     2
                 vv
clus              PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  NARG2 MUTATED                                                  0
  NARG2 WILD-TYPE                                                2
D253V8, multiclass
                                                  clus
vv                                                 NARG2 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                          8
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                        2
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA             0
                                                  clus
vv                                                 NARG2 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                           57
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                          2
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA               2
D253V9, continuous
D253V10, continuous
                 vv
clus              R0 R1 RX
  NARG2 MUTATED    6  4  1
  NARG2 WILD-TYPE 36 20  1
D253V11, multiclass
    clus
vv   NARG2 MUTATED NARG2 WILD-TYPE
  R0             6              36
  R1             4              20
  RX             1               1
D253V12, continuous

Clustering(254) Variable = ZC3H4 MUTATION ANALYSIS
D254V1, survival
                 sevent
clus2              0  1
  ZC3H4 MUTATED    4  3
  ZC3H4 WILD-TYPE 36 26
  ZC3H4 MUTATED ZC3H4 WILD-TYPE 
              7              62 
  ZC3H4 MUTATED ZC3H4 WILD-TYPE 
              3              26 
$`ZC3H4 MUTATED`
TCGA-FZ-5920 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-A4BK TCGA-IB-7651 TCGA-IB-7891 
        2.01         0.79         0.69         1.51        19.82        16.04 
TCGA-IB-7893 
        3.85 

$`ZC3H4 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P5 TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR 
        0.13        11.93        12.66         2.47         0.03         5.46 
TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7289 
       36.20        20.81        12.89         7.66        13.02         7.89 
TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 
        0.92         0.66         0.13         0.26        12.13        11.87 
TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8636 
        0.26         0.62         3.95         0.92         0.53         0.16 
TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-IB-7644 TCGA-IB-7645 
        2.99         0.76         0.95         6.38        11.41        49.38 
TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7886 
        4.77        21.90        15.35        15.65        27.98         4.04 
TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7897 TCGA-IB-8126 
        3.62        43.79        15.81        19.66        15.98         0.56 
TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST 
       17.16        10.82         9.86         7.20        15.12         0.26 
TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 
        1.35         4.18         3.62         8.12        13.68        16.80 
TCGA-US-A77E TCGA-US-A77J 
       14.14        18.67 

  ZC3H4 MUTATED ZC3H4 WILD-TYPE 
           0.69            0.03 
  ZC3H4 MUTATED ZC3H4 WILD-TYPE 
          19.82           49.38 
  ZC3H4 MUTATED ZC3H4 WILD-TYPE 
          2.010           8.005 
[1] "0.7 - 19.8 (2.0)" "0.0 - 49.4 (8.0)"
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"ZC3H4 WILD-TYPE" "ZC3H4 WILD-TYPE" "ZC3H4 WILD-TYPE" "ZC3H4 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"ZC3H4 WILD-TYPE" "ZC3H4 WILD-TYPE" "ZC3H4 WILD-TYPE" "ZC3H4 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"ZC3H4 WILD-TYPE" "ZC3H4 WILD-TYPE" "ZC3H4 WILD-TYPE" "ZC3H4 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
  "ZC3H4 MUTATED" "ZC3H4 WILD-TYPE" "ZC3H4 WILD-TYPE" "ZC3H4 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"ZC3H4 WILD-TYPE" "ZC3H4 WILD-TYPE" "ZC3H4 WILD-TYPE" "ZC3H4 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"ZC3H4 WILD-TYPE" "ZC3H4 WILD-TYPE" "ZC3H4 WILD-TYPE" "ZC3H4 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"ZC3H4 WILD-TYPE" "ZC3H4 WILD-TYPE" "ZC3H4 WILD-TYPE"   "ZC3H4 MUTATED" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
  "ZC3H4 MUTATED" "ZC3H4 WILD-TYPE" "ZC3H4 WILD-TYPE" "ZC3H4 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"ZC3H4 WILD-TYPE" "ZC3H4 WILD-TYPE" "ZC3H4 WILD-TYPE" "ZC3H4 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"ZC3H4 WILD-TYPE"   "ZC3H4 MUTATED" "ZC3H4 WILD-TYPE" "ZC3H4 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"ZC3H4 WILD-TYPE" "ZC3H4 WILD-TYPE" "ZC3H4 WILD-TYPE"   "ZC3H4 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"ZC3H4 WILD-TYPE" "ZC3H4 WILD-TYPE" "ZC3H4 WILD-TYPE" "ZC3H4 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"ZC3H4 WILD-TYPE" "ZC3H4 WILD-TYPE" "ZC3H4 WILD-TYPE"   "ZC3H4 MUTATED" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
  "ZC3H4 MUTATED" "ZC3H4 WILD-TYPE" "ZC3H4 WILD-TYPE" "ZC3H4 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"ZC3H4 WILD-TYPE" "ZC3H4 WILD-TYPE" "ZC3H4 WILD-TYPE" "ZC3H4 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"ZC3H4 WILD-TYPE" "ZC3H4 WILD-TYPE" "ZC3H4 WILD-TYPE" "ZC3H4 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"ZC3H4 WILD-TYPE" "ZC3H4 WILD-TYPE" "ZC3H4 WILD-TYPE" "ZC3H4 WILD-TYPE" 
     TCGA-US-A77J 
"ZC3H4 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"ZC3H4 WILD-TYPE" "ZC3H4 WILD-TYPE" "ZC3H4 WILD-TYPE" "ZC3H4 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"ZC3H4 WILD-TYPE" "ZC3H4 WILD-TYPE" "ZC3H4 WILD-TYPE" "ZC3H4 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"ZC3H4 WILD-TYPE" "ZC3H4 WILD-TYPE" "ZC3H4 WILD-TYPE" "ZC3H4 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
  "ZC3H4 MUTATED" "ZC3H4 WILD-TYPE" "ZC3H4 WILD-TYPE" "ZC3H4 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"ZC3H4 WILD-TYPE" "ZC3H4 WILD-TYPE" "ZC3H4 WILD-TYPE" "ZC3H4 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"ZC3H4 WILD-TYPE" "ZC3H4 WILD-TYPE" "ZC3H4 WILD-TYPE" "ZC3H4 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"ZC3H4 WILD-TYPE" "ZC3H4 WILD-TYPE" "ZC3H4 WILD-TYPE"   "ZC3H4 MUTATED" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
  "ZC3H4 MUTATED" "ZC3H4 WILD-TYPE" "ZC3H4 WILD-TYPE" "ZC3H4 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"ZC3H4 WILD-TYPE" "ZC3H4 WILD-TYPE" "ZC3H4 WILD-TYPE" "ZC3H4 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"ZC3H4 WILD-TYPE"   "ZC3H4 MUTATED" "ZC3H4 WILD-TYPE" "ZC3H4 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"ZC3H4 WILD-TYPE" "ZC3H4 WILD-TYPE" "ZC3H4 WILD-TYPE"   "ZC3H4 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"ZC3H4 WILD-TYPE" "ZC3H4 WILD-TYPE" "ZC3H4 WILD-TYPE" "ZC3H4 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"ZC3H4 WILD-TYPE" "ZC3H4 WILD-TYPE" "ZC3H4 WILD-TYPE"   "ZC3H4 MUTATED" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
  "ZC3H4 MUTATED" "ZC3H4 WILD-TYPE" "ZC3H4 WILD-TYPE" "ZC3H4 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"ZC3H4 WILD-TYPE" "ZC3H4 WILD-TYPE" "ZC3H4 WILD-TYPE" "ZC3H4 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"ZC3H4 WILD-TYPE" "ZC3H4 WILD-TYPE" "ZC3H4 WILD-TYPE" "ZC3H4 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"ZC3H4 WILD-TYPE" "ZC3H4 WILD-TYPE" "ZC3H4 WILD-TYPE" "ZC3H4 WILD-TYPE" 
     TCGA-US-A77J 
"ZC3H4 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"ZC3H4 WILD-TYPE" "ZC3H4 WILD-TYPE" "ZC3H4 WILD-TYPE" "ZC3H4 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"ZC3H4 WILD-TYPE" "ZC3H4 WILD-TYPE" "ZC3H4 WILD-TYPE" "ZC3H4 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"ZC3H4 WILD-TYPE" "ZC3H4 WILD-TYPE" "ZC3H4 WILD-TYPE" "ZC3H4 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
  "ZC3H4 MUTATED" "ZC3H4 WILD-TYPE" "ZC3H4 WILD-TYPE" "ZC3H4 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"ZC3H4 WILD-TYPE" "ZC3H4 WILD-TYPE" "ZC3H4 WILD-TYPE" "ZC3H4 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"ZC3H4 WILD-TYPE" "ZC3H4 WILD-TYPE" "ZC3H4 WILD-TYPE" "ZC3H4 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"ZC3H4 WILD-TYPE" "ZC3H4 WILD-TYPE" "ZC3H4 WILD-TYPE"   "ZC3H4 MUTATED" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
  "ZC3H4 MUTATED" "ZC3H4 WILD-TYPE" "ZC3H4 WILD-TYPE" "ZC3H4 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"ZC3H4 WILD-TYPE" "ZC3H4 WILD-TYPE" "ZC3H4 WILD-TYPE" "ZC3H4 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"ZC3H4 WILD-TYPE"   "ZC3H4 MUTATED" "ZC3H4 WILD-TYPE" "ZC3H4 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"ZC3H4 WILD-TYPE" "ZC3H4 WILD-TYPE" "ZC3H4 WILD-TYPE"   "ZC3H4 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"ZC3H4 WILD-TYPE" "ZC3H4 WILD-TYPE" "ZC3H4 WILD-TYPE" "ZC3H4 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"ZC3H4 WILD-TYPE" "ZC3H4 WILD-TYPE" "ZC3H4 WILD-TYPE"   "ZC3H4 MUTATED" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
  "ZC3H4 MUTATED" "ZC3H4 WILD-TYPE" "ZC3H4 WILD-TYPE" "ZC3H4 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"ZC3H4 WILD-TYPE" "ZC3H4 WILD-TYPE" "ZC3H4 WILD-TYPE" "ZC3H4 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"ZC3H4 WILD-TYPE" "ZC3H4 WILD-TYPE" "ZC3H4 WILD-TYPE" "ZC3H4 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"ZC3H4 WILD-TYPE" "ZC3H4 WILD-TYPE" "ZC3H4 WILD-TYPE" "ZC3H4 WILD-TYPE" 
     TCGA-US-A77J 
"ZC3H4 WILD-TYPE" 
[1] "hr=" "1.5"
D254V2, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  ZC3H4 MUTATED          0        0         1         6         0        0
  ZC3H4 WILD-TYPE        1        4        10        45         2        3
D254V3, multiclass
                 vv
clus              T1+T2 T3+T4
  ZC3H4 MUTATED       0     7
  ZC3H4 WILD-TYPE     6    59
D254V4, multiclass
       clus
vv      ZC3H4 MUTATED ZC3H4 WILD-TYPE
  T1+T2             0               6
  T3+T4             7              59
D254V5, binary
                 cls
clus               0  1
  ZC3H4 MUTATED    1  6
  ZC3H4 WILD-TYPE 16 48
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ZC3H4 MUTATED      1    6
  ZC3H4 WILD-TYPE   16   48
   clus
vv  ZC3H4 MUTATED ZC3H4 WILD-TYPE
  0             1              16
  1             6              48
                 vv
clus              M0 M1 MX
  ZC3H4 MUTATED    4  0  3
  ZC3H4 WILD-TYPE 35  3 27
D254V6, multiclass
    clus
vv   ZC3H4 MUTATED ZC3H4 WILD-TYPE
  M0             4              35
  M1             0               3
  MX             3              27
D254V7, binary
                 cls
clus               0  1
  ZC3H4 MUTATED    2  5
  ZC3H4 WILD-TYPE 34 31
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ZC3H4 MUTATED      2    5
  ZC3H4 WILD-TYPE   34   31
        clus
vv       ZC3H4 MUTATED ZC3H4 WILD-TYPE
  FEMALE             2              34
  MALE               5              31
                 vv
clus              PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  ZC3H4 MUTATED                                     6
  ZC3H4 WILD-TYPE                                  59
                 vv
clus              PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  ZC3H4 MUTATED                                       1
  ZC3H4 WILD-TYPE                                     3
                 vv
clus              PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  ZC3H4 MUTATED                                                  0
  ZC3H4 WILD-TYPE                                                2
D254V8, multiclass
                                                  clus
vv                                                 ZC3H4 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                          6
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                        1
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA             0
                                                  clus
vv                                                 ZC3H4 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                           59
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                          3
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA               2
D254V9, continuous
[1] "Remove cluster labels:" "ZC3H4 MUTATED"         
clus
  ZC3H4 MUTATED ZC3H4 WILD-TYPE 
              2              20 
     TCGA-F2-6880      TCGA-FB-A4P5      TCGA-FB-A4P6      TCGA-FB-A5VM 
"ZC3H4 WILD-TYPE" "ZC3H4 WILD-TYPE" "ZC3H4 WILD-TYPE" "ZC3H4 WILD-TYPE" 
     TCGA-FB-A78T      TCGA-FB-A7DR      TCGA-H6-8124      TCGA-H6-A45N 
"ZC3H4 WILD-TYPE" "ZC3H4 WILD-TYPE" "ZC3H4 WILD-TYPE" "ZC3H4 WILD-TYPE" 
     TCGA-H8-A6C1      TCGA-IB-7644      TCGA-IB-7649      TCGA-IB-7885 
"ZC3H4 WILD-TYPE" "ZC3H4 WILD-TYPE" "ZC3H4 WILD-TYPE" "ZC3H4 WILD-TYPE" 
     TCGA-IB-7886      TCGA-IB-7887      TCGA-IB-8126      TCGA-IB-8127 
"ZC3H4 WILD-TYPE" "ZC3H4 WILD-TYPE" "ZC3H4 WILD-TYPE" "ZC3H4 WILD-TYPE" 
     TCGA-IB-A5SS      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"ZC3H4 WILD-TYPE" "ZC3H4 WILD-TYPE" "ZC3H4 WILD-TYPE" "ZC3H4 WILD-TYPE" 
D254V10, continuous
[1] "Remove cluster labels:" "ZC3H4 MUTATED"         
clus
  ZC3H4 MUTATED ZC3H4 WILD-TYPE 
              2              17 
     TCGA-FB-A4P5      TCGA-FB-A4P6      TCGA-FB-A5VM      TCGA-FB-A78T 
"ZC3H4 WILD-TYPE" "ZC3H4 WILD-TYPE" "ZC3H4 WILD-TYPE" "ZC3H4 WILD-TYPE" 
     TCGA-FB-A7DR      TCGA-H6-8124      TCGA-H8-A6C1      TCGA-IB-7644 
"ZC3H4 WILD-TYPE" "ZC3H4 WILD-TYPE" "ZC3H4 WILD-TYPE" "ZC3H4 WILD-TYPE" 
     TCGA-IB-7649      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-8126 
"ZC3H4 WILD-TYPE" "ZC3H4 WILD-TYPE" "ZC3H4 WILD-TYPE" "ZC3H4 WILD-TYPE" 
     TCGA-IB-8127      TCGA-IB-A5SS      TCGA-IB-A6UG      TCGA-LB-A7SX 
"ZC3H4 WILD-TYPE" "ZC3H4 WILD-TYPE" "ZC3H4 WILD-TYPE" "ZC3H4 WILD-TYPE" 
     TCGA-OE-A75W 
"ZC3H4 WILD-TYPE" 
                 vv
clus              R0 R1 RX
  ZC3H4 MUTATED    6  1  0
  ZC3H4 WILD-TYPE 36 23  2
D254V11, multiclass
    clus
vv   ZC3H4 MUTATED ZC3H4 WILD-TYPE
  R0             6              36
  R1             1              23
  RX             0               2
D254V12, continuous

Clustering(255) Variable = TIGD7 MUTATION ANALYSIS
D255V1, survival
                 sevent
clus2              0  1
  TIGD7 MUTATED    0  3
  TIGD7 WILD-TYPE 40 26
  TIGD7 MUTATED TIGD7 WILD-TYPE 
              3              66 
  TIGD7 MUTATED TIGD7 WILD-TYPE 
              3              26 
$`TIGD7 MUTATED`
TCGA-IB-7646 TCGA-IB-7651 TCGA-IB-7897 
        4.77        19.82        15.98 

$`TIGD7 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P5 TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR 
        0.13        11.93        12.66         2.47         0.03         5.46 
TCGA-FZ-5920 TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 
        2.01        36.20        20.81        12.89         7.66        13.02 
TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 
        7.89         0.92         0.66         0.13         0.26        12.13 
TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 
       11.87         0.26         0.62         0.79         0.69         3.95 
TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H 
        0.92         0.53         0.16         2.99         0.76         0.95 
TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7647 TCGA-IB-7649 
        6.38         1.51        11.41        49.38        21.90        15.35 
TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 
       15.65        27.98         4.04         3.62        43.79        15.81 
TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO 
       19.66        16.04         3.85         0.56        17.16        10.82 
TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX 
        9.86         7.20        15.12         0.26         1.35         4.18 
TCGA-OE-A75W TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
        3.62         8.12        13.68        16.80        14.14        18.67 

  TIGD7 MUTATED TIGD7 WILD-TYPE 
           4.77            0.03 
  TIGD7 MUTATED TIGD7 WILD-TYPE 
          19.82           49.38 
  TIGD7 MUTATED TIGD7 WILD-TYPE 
          15.98            7.43 
[1] "4.8 - 19.8 (16.0)" "0.0 - 49.4 (7.4)" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"TIGD7 WILD-TYPE" "TIGD7 WILD-TYPE" "TIGD7 WILD-TYPE" "TIGD7 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"TIGD7 WILD-TYPE" "TIGD7 WILD-TYPE" "TIGD7 WILD-TYPE" "TIGD7 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"TIGD7 WILD-TYPE" "TIGD7 WILD-TYPE" "TIGD7 WILD-TYPE" "TIGD7 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"TIGD7 WILD-TYPE" "TIGD7 WILD-TYPE" "TIGD7 WILD-TYPE" "TIGD7 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"TIGD7 WILD-TYPE" "TIGD7 WILD-TYPE" "TIGD7 WILD-TYPE" "TIGD7 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"TIGD7 WILD-TYPE" "TIGD7 WILD-TYPE" "TIGD7 WILD-TYPE" "TIGD7 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"TIGD7 WILD-TYPE" "TIGD7 WILD-TYPE" "TIGD7 WILD-TYPE" "TIGD7 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"TIGD7 WILD-TYPE" "TIGD7 WILD-TYPE" "TIGD7 WILD-TYPE" "TIGD7 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"TIGD7 WILD-TYPE" "TIGD7 WILD-TYPE" "TIGD7 WILD-TYPE" "TIGD7 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"TIGD7 WILD-TYPE" "TIGD7 WILD-TYPE" "TIGD7 WILD-TYPE" "TIGD7 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
  "TIGD7 MUTATED" "TIGD7 WILD-TYPE" "TIGD7 WILD-TYPE"   "TIGD7 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"TIGD7 WILD-TYPE" "TIGD7 WILD-TYPE" "TIGD7 WILD-TYPE" "TIGD7 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"TIGD7 WILD-TYPE" "TIGD7 WILD-TYPE" "TIGD7 WILD-TYPE" "TIGD7 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"TIGD7 WILD-TYPE"   "TIGD7 MUTATED" "TIGD7 WILD-TYPE" "TIGD7 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"TIGD7 WILD-TYPE" "TIGD7 WILD-TYPE" "TIGD7 WILD-TYPE" "TIGD7 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"TIGD7 WILD-TYPE" "TIGD7 WILD-TYPE" "TIGD7 WILD-TYPE" "TIGD7 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"TIGD7 WILD-TYPE" "TIGD7 WILD-TYPE" "TIGD7 WILD-TYPE" "TIGD7 WILD-TYPE" 
     TCGA-US-A77J 
"TIGD7 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"TIGD7 WILD-TYPE" "TIGD7 WILD-TYPE" "TIGD7 WILD-TYPE" "TIGD7 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"TIGD7 WILD-TYPE" "TIGD7 WILD-TYPE" "TIGD7 WILD-TYPE" "TIGD7 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"TIGD7 WILD-TYPE" "TIGD7 WILD-TYPE" "TIGD7 WILD-TYPE" "TIGD7 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"TIGD7 WILD-TYPE" "TIGD7 WILD-TYPE" "TIGD7 WILD-TYPE" "TIGD7 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"TIGD7 WILD-TYPE" "TIGD7 WILD-TYPE" "TIGD7 WILD-TYPE" "TIGD7 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"TIGD7 WILD-TYPE" "TIGD7 WILD-TYPE" "TIGD7 WILD-TYPE" "TIGD7 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"TIGD7 WILD-TYPE" "TIGD7 WILD-TYPE" "TIGD7 WILD-TYPE" "TIGD7 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"TIGD7 WILD-TYPE" "TIGD7 WILD-TYPE" "TIGD7 WILD-TYPE" "TIGD7 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"TIGD7 WILD-TYPE" "TIGD7 WILD-TYPE" "TIGD7 WILD-TYPE" "TIGD7 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"TIGD7 WILD-TYPE" "TIGD7 WILD-TYPE" "TIGD7 WILD-TYPE" "TIGD7 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
  "TIGD7 MUTATED" "TIGD7 WILD-TYPE" "TIGD7 WILD-TYPE"   "TIGD7 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"TIGD7 WILD-TYPE" "TIGD7 WILD-TYPE" "TIGD7 WILD-TYPE" "TIGD7 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"TIGD7 WILD-TYPE" "TIGD7 WILD-TYPE" "TIGD7 WILD-TYPE" "TIGD7 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"TIGD7 WILD-TYPE"   "TIGD7 MUTATED" "TIGD7 WILD-TYPE" "TIGD7 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"TIGD7 WILD-TYPE" "TIGD7 WILD-TYPE" "TIGD7 WILD-TYPE" "TIGD7 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"TIGD7 WILD-TYPE" "TIGD7 WILD-TYPE" "TIGD7 WILD-TYPE" "TIGD7 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"TIGD7 WILD-TYPE" "TIGD7 WILD-TYPE" "TIGD7 WILD-TYPE" "TIGD7 WILD-TYPE" 
     TCGA-US-A77J 
"TIGD7 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"TIGD7 WILD-TYPE" "TIGD7 WILD-TYPE" "TIGD7 WILD-TYPE" "TIGD7 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"TIGD7 WILD-TYPE" "TIGD7 WILD-TYPE" "TIGD7 WILD-TYPE" "TIGD7 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"TIGD7 WILD-TYPE" "TIGD7 WILD-TYPE" "TIGD7 WILD-TYPE" "TIGD7 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"TIGD7 WILD-TYPE" "TIGD7 WILD-TYPE" "TIGD7 WILD-TYPE" "TIGD7 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"TIGD7 WILD-TYPE" "TIGD7 WILD-TYPE" "TIGD7 WILD-TYPE" "TIGD7 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"TIGD7 WILD-TYPE" "TIGD7 WILD-TYPE" "TIGD7 WILD-TYPE" "TIGD7 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"TIGD7 WILD-TYPE" "TIGD7 WILD-TYPE" "TIGD7 WILD-TYPE" "TIGD7 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"TIGD7 WILD-TYPE" "TIGD7 WILD-TYPE" "TIGD7 WILD-TYPE" "TIGD7 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"TIGD7 WILD-TYPE" "TIGD7 WILD-TYPE" "TIGD7 WILD-TYPE" "TIGD7 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"TIGD7 WILD-TYPE" "TIGD7 WILD-TYPE" "TIGD7 WILD-TYPE" "TIGD7 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
  "TIGD7 MUTATED" "TIGD7 WILD-TYPE" "TIGD7 WILD-TYPE"   "TIGD7 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"TIGD7 WILD-TYPE" "TIGD7 WILD-TYPE" "TIGD7 WILD-TYPE" "TIGD7 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"TIGD7 WILD-TYPE" "TIGD7 WILD-TYPE" "TIGD7 WILD-TYPE" "TIGD7 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"TIGD7 WILD-TYPE"   "TIGD7 MUTATED" "TIGD7 WILD-TYPE" "TIGD7 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"TIGD7 WILD-TYPE" "TIGD7 WILD-TYPE" "TIGD7 WILD-TYPE" "TIGD7 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"TIGD7 WILD-TYPE" "TIGD7 WILD-TYPE" "TIGD7 WILD-TYPE" "TIGD7 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"TIGD7 WILD-TYPE" "TIGD7 WILD-TYPE" "TIGD7 WILD-TYPE" "TIGD7 WILD-TYPE" 
     TCGA-US-A77J 
"TIGD7 WILD-TYPE" 
[1] "hr=" "1.6"
D255V2, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  TIGD7 MUTATED          0        0         0         3         0        0
  TIGD7 WILD-TYPE        1        4        11        48         2        3
D255V3, multiclass
                 vv
clus              T1+T2 T3+T4
  TIGD7 MUTATED       0     3
  TIGD7 WILD-TYPE     6    63
D255V4, multiclass
       clus
vv      TIGD7 MUTATED TIGD7 WILD-TYPE
  T1+T2             0               6
  T3+T4             3              63
D255V5, binary
                 cls
clus               0  1
  TIGD7 MUTATED    0  3
  TIGD7 WILD-TYPE 17 51
[1] "tbl2"
                 cls
clus              [,1] [,2]
  TIGD7 MUTATED      0    3
  TIGD7 WILD-TYPE   17   51
   clus
vv  TIGD7 MUTATED TIGD7 WILD-TYPE
  0             0              17
  1             3              51
                 vv
clus              M0 M1 MX
  TIGD7 MUTATED    3  0  0
  TIGD7 WILD-TYPE 36  3 30
D255V6, multiclass
    clus
vv   TIGD7 MUTATED TIGD7 WILD-TYPE
  M0             3              36
  M1             0               3
  MX             0              30
D255V7, binary
                 cls
clus               0  1
  TIGD7 MUTATED    2  1
  TIGD7 WILD-TYPE 34 35
[1] "tbl2"
                 cls
clus              [,1] [,2]
  TIGD7 MUTATED      2    1
  TIGD7 WILD-TYPE   34   35
        clus
vv       TIGD7 MUTATED TIGD7 WILD-TYPE
  FEMALE             2              34
  MALE               1              35
                 vv
clus              PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  TIGD7 MUTATED                                     3
  TIGD7 WILD-TYPE                                  62
                 vv
clus              PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  TIGD7 MUTATED                                       0
  TIGD7 WILD-TYPE                                     4
                 vv
clus              PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  TIGD7 MUTATED                                                  0
  TIGD7 WILD-TYPE                                                2
D255V8, multiclass
                                                  clus
vv                                                 TIGD7 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                          3
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                        0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA             0
                                                  clus
vv                                                 TIGD7 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                           62
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                          4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA               2
D255V9, continuous
[1] "Remove cluster labels:" "TIGD7 MUTATED"         
clus
  TIGD7 MUTATED TIGD7 WILD-TYPE 
              1              21 
     TCGA-F2-6880      TCGA-FB-A4P5      TCGA-FB-A4P6      TCGA-FB-A5VM 
"TIGD7 WILD-TYPE" "TIGD7 WILD-TYPE" "TIGD7 WILD-TYPE" "TIGD7 WILD-TYPE" 
     TCGA-FB-A78T      TCGA-FB-A7DR      TCGA-H6-8124      TCGA-H6-A45N 
"TIGD7 WILD-TYPE" "TIGD7 WILD-TYPE" "TIGD7 WILD-TYPE" "TIGD7 WILD-TYPE" 
     TCGA-H8-A6C1      TCGA-IB-7644      TCGA-IB-7649      TCGA-IB-7885 
"TIGD7 WILD-TYPE" "TIGD7 WILD-TYPE" "TIGD7 WILD-TYPE" "TIGD7 WILD-TYPE" 
     TCGA-IB-7886      TCGA-IB-7887      TCGA-IB-7891      TCGA-IB-8126 
"TIGD7 WILD-TYPE" "TIGD7 WILD-TYPE" "TIGD7 WILD-TYPE" "TIGD7 WILD-TYPE" 
     TCGA-IB-8127      TCGA-IB-A5SS      TCGA-IB-A6UG      TCGA-LB-A7SX 
"TIGD7 WILD-TYPE" "TIGD7 WILD-TYPE" "TIGD7 WILD-TYPE" "TIGD7 WILD-TYPE" 
     TCGA-OE-A75W 
"TIGD7 WILD-TYPE" 
D255V10, continuous
[1] "Remove cluster labels:" "TIGD7 MUTATED"         
clus
  TIGD7 MUTATED TIGD7 WILD-TYPE 
              1              18 
     TCGA-FB-A4P5      TCGA-FB-A4P6      TCGA-FB-A5VM      TCGA-FB-A78T 
"TIGD7 WILD-TYPE" "TIGD7 WILD-TYPE" "TIGD7 WILD-TYPE" "TIGD7 WILD-TYPE" 
     TCGA-FB-A7DR      TCGA-H6-8124      TCGA-H8-A6C1      TCGA-IB-7644 
"TIGD7 WILD-TYPE" "TIGD7 WILD-TYPE" "TIGD7 WILD-TYPE" "TIGD7 WILD-TYPE" 
     TCGA-IB-7649      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7891 
"TIGD7 WILD-TYPE" "TIGD7 WILD-TYPE" "TIGD7 WILD-TYPE" "TIGD7 WILD-TYPE" 
     TCGA-IB-8126      TCGA-IB-8127      TCGA-IB-A5SS      TCGA-IB-A6UG 
"TIGD7 WILD-TYPE" "TIGD7 WILD-TYPE" "TIGD7 WILD-TYPE" "TIGD7 WILD-TYPE" 
     TCGA-LB-A7SX      TCGA-OE-A75W 
"TIGD7 WILD-TYPE" "TIGD7 WILD-TYPE" 
                 vv
clus              R0 R1 RX
  TIGD7 MUTATED    2  1  0
  TIGD7 WILD-TYPE 40 23  2
D255V11, multiclass
    clus
vv   TIGD7 MUTATED TIGD7 WILD-TYPE
  R0             2              40
  R1             1              23
  RX             0               2
D255V12, continuous

Clustering(256) Variable = TATDN2 MUTATION ANALYSIS
D256V1, survival
                  sevent
clus2               0  1
  TATDN2 MUTATED    2  5
  TATDN2 WILD-TYPE 38 24
  TATDN2 MUTATED TATDN2 WILD-TYPE 
               7               62 
  TATDN2 MUTATED TATDN2 WILD-TYPE 
               5               24 
$`TATDN2 MUTATED`
TCGA-HZ-7919 TCGA-HZ-8005 TCGA-HZ-8317 TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7651 
        0.66         3.95         0.53        11.41        49.38        19.82 
TCGA-IB-7887 
        3.62 

$`TATDN2 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P5 TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR 
        0.13        11.93        12.66         2.47         0.03         5.46 
TCGA-FZ-5920 TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 
        2.01        36.20        20.81        12.89         7.66        13.02 
TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 
        7.89         0.92         0.13         0.26        12.13        11.87 
TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8315 TCGA-HZ-8636 
        0.26         0.62         0.79         0.69         0.92         0.16 
TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7646 
        2.99         0.76         0.95         6.38         1.51         4.77 
TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7888 
       21.90        15.35        15.65        27.98         4.04        43.79 
TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-8126 
       15.81        19.66        16.04         3.85        15.98         0.56 
TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST 
       17.16        10.82         9.86         7.20        15.12         0.26 
TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 
        1.35         4.18         3.62         8.12        13.68        16.80 
TCGA-US-A77E TCGA-US-A77J 
       14.14        18.67 

  TATDN2 MUTATED TATDN2 WILD-TYPE 
            0.53             0.03 
  TATDN2 MUTATED TATDN2 WILD-TYPE 
           49.38            43.79 
  TATDN2 MUTATED TATDN2 WILD-TYPE 
           3.950            7.775 
[1] "0.5 - 49.4 (4.0)" "0.0 - 43.8 (7.8)"
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
"TATDN2 WILD-TYPE" "TATDN2 WILD-TYPE" "TATDN2 WILD-TYPE" "TATDN2 WILD-TYPE" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"TATDN2 WILD-TYPE" "TATDN2 WILD-TYPE" "TATDN2 WILD-TYPE" "TATDN2 WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
"TATDN2 WILD-TYPE" "TATDN2 WILD-TYPE" "TATDN2 WILD-TYPE" "TATDN2 WILD-TYPE" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"TATDN2 WILD-TYPE" "TATDN2 WILD-TYPE" "TATDN2 WILD-TYPE" "TATDN2 WILD-TYPE" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
"TATDN2 WILD-TYPE" "TATDN2 WILD-TYPE" "TATDN2 WILD-TYPE" "TATDN2 WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
  "TATDN2 MUTATED" "TATDN2 WILD-TYPE" "TATDN2 WILD-TYPE" "TATDN2 WILD-TYPE" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"TATDN2 WILD-TYPE" "TATDN2 WILD-TYPE" "TATDN2 WILD-TYPE" "TATDN2 WILD-TYPE" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
"TATDN2 WILD-TYPE"   "TATDN2 MUTATED" "TATDN2 WILD-TYPE"   "TATDN2 MUTATED" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
"TATDN2 WILD-TYPE" "TATDN2 WILD-TYPE" "TATDN2 WILD-TYPE" "TATDN2 WILD-TYPE" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
"TATDN2 WILD-TYPE" "TATDN2 WILD-TYPE"   "TATDN2 MUTATED"   "TATDN2 MUTATED" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
"TATDN2 WILD-TYPE" "TATDN2 WILD-TYPE" "TATDN2 WILD-TYPE"   "TATDN2 MUTATED" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
"TATDN2 WILD-TYPE" "TATDN2 WILD-TYPE" "TATDN2 WILD-TYPE"   "TATDN2 MUTATED" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
"TATDN2 WILD-TYPE" "TATDN2 WILD-TYPE" "TATDN2 WILD-TYPE" "TATDN2 WILD-TYPE" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
"TATDN2 WILD-TYPE" "TATDN2 WILD-TYPE" "TATDN2 WILD-TYPE" "TATDN2 WILD-TYPE" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"TATDN2 WILD-TYPE" "TATDN2 WILD-TYPE" "TATDN2 WILD-TYPE" "TATDN2 WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"TATDN2 WILD-TYPE" "TATDN2 WILD-TYPE" "TATDN2 WILD-TYPE" "TATDN2 WILD-TYPE" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
"TATDN2 WILD-TYPE" "TATDN2 WILD-TYPE" "TATDN2 WILD-TYPE" "TATDN2 WILD-TYPE" 
      TCGA-US-A77J 
"TATDN2 WILD-TYPE" 
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
"TATDN2 WILD-TYPE" "TATDN2 WILD-TYPE" "TATDN2 WILD-TYPE" "TATDN2 WILD-TYPE" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"TATDN2 WILD-TYPE" "TATDN2 WILD-TYPE" "TATDN2 WILD-TYPE" "TATDN2 WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
"TATDN2 WILD-TYPE" "TATDN2 WILD-TYPE" "TATDN2 WILD-TYPE" "TATDN2 WILD-TYPE" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"TATDN2 WILD-TYPE" "TATDN2 WILD-TYPE" "TATDN2 WILD-TYPE" "TATDN2 WILD-TYPE" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
"TATDN2 WILD-TYPE" "TATDN2 WILD-TYPE" "TATDN2 WILD-TYPE" "TATDN2 WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
  "TATDN2 MUTATED" "TATDN2 WILD-TYPE" "TATDN2 WILD-TYPE" "TATDN2 WILD-TYPE" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"TATDN2 WILD-TYPE" "TATDN2 WILD-TYPE" "TATDN2 WILD-TYPE" "TATDN2 WILD-TYPE" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
"TATDN2 WILD-TYPE"   "TATDN2 MUTATED" "TATDN2 WILD-TYPE"   "TATDN2 MUTATED" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
"TATDN2 WILD-TYPE" "TATDN2 WILD-TYPE" "TATDN2 WILD-TYPE" "TATDN2 WILD-TYPE" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
"TATDN2 WILD-TYPE" "TATDN2 WILD-TYPE"   "TATDN2 MUTATED"   "TATDN2 MUTATED" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
"TATDN2 WILD-TYPE" "TATDN2 WILD-TYPE" "TATDN2 WILD-TYPE"   "TATDN2 MUTATED" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
"TATDN2 WILD-TYPE" "TATDN2 WILD-TYPE" "TATDN2 WILD-TYPE"   "TATDN2 MUTATED" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
"TATDN2 WILD-TYPE" "TATDN2 WILD-TYPE" "TATDN2 WILD-TYPE" "TATDN2 WILD-TYPE" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
"TATDN2 WILD-TYPE" "TATDN2 WILD-TYPE" "TATDN2 WILD-TYPE" "TATDN2 WILD-TYPE" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"TATDN2 WILD-TYPE" "TATDN2 WILD-TYPE" "TATDN2 WILD-TYPE" "TATDN2 WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"TATDN2 WILD-TYPE" "TATDN2 WILD-TYPE" "TATDN2 WILD-TYPE" "TATDN2 WILD-TYPE" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
"TATDN2 WILD-TYPE" "TATDN2 WILD-TYPE" "TATDN2 WILD-TYPE" "TATDN2 WILD-TYPE" 
      TCGA-US-A77J 
"TATDN2 WILD-TYPE" 
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
"TATDN2 WILD-TYPE" "TATDN2 WILD-TYPE" "TATDN2 WILD-TYPE" "TATDN2 WILD-TYPE" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"TATDN2 WILD-TYPE" "TATDN2 WILD-TYPE" "TATDN2 WILD-TYPE" "TATDN2 WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
"TATDN2 WILD-TYPE" "TATDN2 WILD-TYPE" "TATDN2 WILD-TYPE" "TATDN2 WILD-TYPE" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"TATDN2 WILD-TYPE" "TATDN2 WILD-TYPE" "TATDN2 WILD-TYPE" "TATDN2 WILD-TYPE" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
"TATDN2 WILD-TYPE" "TATDN2 WILD-TYPE" "TATDN2 WILD-TYPE" "TATDN2 WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
  "TATDN2 MUTATED" "TATDN2 WILD-TYPE" "TATDN2 WILD-TYPE" "TATDN2 WILD-TYPE" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"TATDN2 WILD-TYPE" "TATDN2 WILD-TYPE" "TATDN2 WILD-TYPE" "TATDN2 WILD-TYPE" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
"TATDN2 WILD-TYPE"   "TATDN2 MUTATED" "TATDN2 WILD-TYPE"   "TATDN2 MUTATED" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
"TATDN2 WILD-TYPE" "TATDN2 WILD-TYPE" "TATDN2 WILD-TYPE" "TATDN2 WILD-TYPE" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
"TATDN2 WILD-TYPE" "TATDN2 WILD-TYPE"   "TATDN2 MUTATED"   "TATDN2 MUTATED" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
"TATDN2 WILD-TYPE" "TATDN2 WILD-TYPE" "TATDN2 WILD-TYPE"   "TATDN2 MUTATED" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
"TATDN2 WILD-TYPE" "TATDN2 WILD-TYPE" "TATDN2 WILD-TYPE"   "TATDN2 MUTATED" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
"TATDN2 WILD-TYPE" "TATDN2 WILD-TYPE" "TATDN2 WILD-TYPE" "TATDN2 WILD-TYPE" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
"TATDN2 WILD-TYPE" "TATDN2 WILD-TYPE" "TATDN2 WILD-TYPE" "TATDN2 WILD-TYPE" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"TATDN2 WILD-TYPE" "TATDN2 WILD-TYPE" "TATDN2 WILD-TYPE" "TATDN2 WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"TATDN2 WILD-TYPE" "TATDN2 WILD-TYPE" "TATDN2 WILD-TYPE" "TATDN2 WILD-TYPE" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
"TATDN2 WILD-TYPE" "TATDN2 WILD-TYPE" "TATDN2 WILD-TYPE" "TATDN2 WILD-TYPE" 
      TCGA-US-A77J 
"TATDN2 WILD-TYPE" 
[1] "hr=" "1"  
D256V2, continuous
                  vv
clus               STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  TATDN2 MUTATED          0        0         0         6         0        1
  TATDN2 WILD-TYPE        1        4        11        45         2        2
D256V3, multiclass
                  vv
clus               T1+T2 T3+T4
  TATDN2 MUTATED       0     7
  TATDN2 WILD-TYPE     6    59
D256V4, multiclass
       clus
vv      TATDN2 MUTATED TATDN2 WILD-TYPE
  T1+T2              0                6
  T3+T4              7               59
D256V5, binary
                  cls
clus                0  1
  TATDN2 MUTATED    0  7
  TATDN2 WILD-TYPE 17 47
[1] "tbl2"
                  cls
clus               [,1] [,2]
  TATDN2 MUTATED      0    7
  TATDN2 WILD-TYPE   17   47
   clus
vv  TATDN2 MUTATED TATDN2 WILD-TYPE
  0              0               17
  1              7               47
                  vv
clus               M0 M1 MX
  TATDN2 MUTATED    4  1  2
  TATDN2 WILD-TYPE 35  2 28
D256V6, multiclass
    clus
vv   TATDN2 MUTATED TATDN2 WILD-TYPE
  M0              4               35
  M1              1                2
  MX              2               28
D256V7, binary
                  cls
clus                0  1
  TATDN2 MUTATED    6  1
  TATDN2 WILD-TYPE 30 35
[1] "tbl2"
                  cls
clus               [,1] [,2]
  TATDN2 MUTATED      6    1
  TATDN2 WILD-TYPE   30   35
        clus
vv       TATDN2 MUTATED TATDN2 WILD-TYPE
  FEMALE              6               30
  MALE                1               35
                  vv
clus               PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  TATDN2 MUTATED                                     7
  TATDN2 WILD-TYPE                                  58
                  vv
clus               PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  TATDN2 MUTATED                                       0
  TATDN2 WILD-TYPE                                     4
                  vv
clus               PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  TATDN2 MUTATED                                                  0
  TATDN2 WILD-TYPE                                                2
D256V8, multiclass
                                                  clus
vv                                                 TATDN2 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                           7
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                         0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA              0
                                                  clus
vv                                                 TATDN2 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                            58
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                           4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                2
D256V9, continuous
D256V10, continuous
[1] "Remove cluster labels:" "TATDN2 MUTATED"        
clus
  TATDN2 MUTATED TATDN2 WILD-TYPE 
               2               17 
      TCGA-FB-A4P5       TCGA-FB-A4P6       TCGA-FB-A5VM       TCGA-FB-A78T 
"TATDN2 WILD-TYPE" "TATDN2 WILD-TYPE" "TATDN2 WILD-TYPE" "TATDN2 WILD-TYPE" 
      TCGA-FB-A7DR       TCGA-H6-8124       TCGA-H8-A6C1       TCGA-IB-7649 
"TATDN2 WILD-TYPE" "TATDN2 WILD-TYPE" "TATDN2 WILD-TYPE" "TATDN2 WILD-TYPE" 
      TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7891       TCGA-IB-8126 
"TATDN2 WILD-TYPE" "TATDN2 WILD-TYPE" "TATDN2 WILD-TYPE" "TATDN2 WILD-TYPE" 
      TCGA-IB-8127       TCGA-IB-A5SS       TCGA-IB-A6UG       TCGA-LB-A7SX 
"TATDN2 WILD-TYPE" "TATDN2 WILD-TYPE" "TATDN2 WILD-TYPE" "TATDN2 WILD-TYPE" 
      TCGA-OE-A75W 
"TATDN2 WILD-TYPE" 
                  vv
clus               R0 R1 RX
  TATDN2 MUTATED    2  5  0
  TATDN2 WILD-TYPE 40 19  2
D256V11, multiclass
    clus
vv   TATDN2 MUTATED TATDN2 WILD-TYPE
  R0              2               40
  R1              5               19
  RX              0                2
D256V12, continuous

Clustering(257) Variable = GSTA1 MUTATION ANALYSIS
D257V1, survival
                 sevent
clus2              0  1
  GSTA1 MUTATED    3  2
  GSTA1 WILD-TYPE 37 27
  GSTA1 MUTATED GSTA1 WILD-TYPE 
              5              64 
  GSTA1 MUTATED GSTA1 WILD-TYPE 
              2              27 
$`GSTA1 MUTATED`
TCGA-F2-7276 TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8638 TCGA-IB-7891 
        7.10         3.95         0.92         2.99        16.04 

$`GSTA1 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-A44G TCGA-F2-A44H TCGA-FB-A4P5 
       10.98         9.70        11.84         5.03        19.27         0.13 
TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR TCGA-FZ-5920 
       11.93        12.66         2.47         0.03         5.46         2.01 
TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7289 
       36.20        20.81        12.89         7.66        13.02         7.89 
TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 
        0.92         0.66         0.13         0.26        12.13        11.87 
TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8317 TCGA-HZ-8636 
        0.26         0.62         0.79         0.69         0.53         0.16 
TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7645 
        0.76         0.95         6.38         1.51        11.41        49.38 
TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7651 TCGA-IB-7652 TCGA-IB-7885 
        4.77        21.90        15.35        19.82        15.65        27.98 
TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7893 
        4.04         3.62        43.79        15.81        19.66         3.85 
TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ 
       15.98         0.56        17.16        10.82         9.86         7.20 
TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W TCGA-PZ-A5RE 
       15.12         0.26         1.35         4.18         3.62         8.12 
TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
       13.68        16.80        14.14        18.67 

  GSTA1 MUTATED GSTA1 WILD-TYPE 
           0.92            0.03 
  GSTA1 MUTATED GSTA1 WILD-TYPE 
          16.04           49.38 
  GSTA1 MUTATED GSTA1 WILD-TYPE 
          3.950           8.005 
[1] "0.9 - 16.0 (4.0)" "0.0 - 49.4 (8.0)"
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"GSTA1 WILD-TYPE" "GSTA1 WILD-TYPE" "GSTA1 WILD-TYPE"   "GSTA1 MUTATED" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"GSTA1 WILD-TYPE" "GSTA1 WILD-TYPE" "GSTA1 WILD-TYPE" "GSTA1 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"GSTA1 WILD-TYPE" "GSTA1 WILD-TYPE" "GSTA1 WILD-TYPE" "GSTA1 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"GSTA1 WILD-TYPE" "GSTA1 WILD-TYPE" "GSTA1 WILD-TYPE" "GSTA1 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"GSTA1 WILD-TYPE" "GSTA1 WILD-TYPE" "GSTA1 WILD-TYPE" "GSTA1 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"GSTA1 WILD-TYPE" "GSTA1 WILD-TYPE" "GSTA1 WILD-TYPE" "GSTA1 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"GSTA1 WILD-TYPE" "GSTA1 WILD-TYPE" "GSTA1 WILD-TYPE" "GSTA1 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"GSTA1 WILD-TYPE"   "GSTA1 MUTATED"   "GSTA1 MUTATED" "GSTA1 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"GSTA1 WILD-TYPE"   "GSTA1 MUTATED" "GSTA1 WILD-TYPE" "GSTA1 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"GSTA1 WILD-TYPE" "GSTA1 WILD-TYPE" "GSTA1 WILD-TYPE" "GSTA1 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"GSTA1 WILD-TYPE" "GSTA1 WILD-TYPE" "GSTA1 WILD-TYPE" "GSTA1 WILD-TYPE" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"GSTA1 WILD-TYPE" "GSTA1 WILD-TYPE" "GSTA1 WILD-TYPE" "GSTA1 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"GSTA1 WILD-TYPE" "GSTA1 WILD-TYPE" "GSTA1 WILD-TYPE"   "GSTA1 MUTATED" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"GSTA1 WILD-TYPE" "GSTA1 WILD-TYPE" "GSTA1 WILD-TYPE" "GSTA1 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"GSTA1 WILD-TYPE" "GSTA1 WILD-TYPE" "GSTA1 WILD-TYPE" "GSTA1 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"GSTA1 WILD-TYPE" "GSTA1 WILD-TYPE" "GSTA1 WILD-TYPE" "GSTA1 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"GSTA1 WILD-TYPE" "GSTA1 WILD-TYPE" "GSTA1 WILD-TYPE" "GSTA1 WILD-TYPE" 
     TCGA-US-A77J 
"GSTA1 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"GSTA1 WILD-TYPE" "GSTA1 WILD-TYPE" "GSTA1 WILD-TYPE"   "GSTA1 MUTATED" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"GSTA1 WILD-TYPE" "GSTA1 WILD-TYPE" "GSTA1 WILD-TYPE" "GSTA1 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"GSTA1 WILD-TYPE" "GSTA1 WILD-TYPE" "GSTA1 WILD-TYPE" "GSTA1 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"GSTA1 WILD-TYPE" "GSTA1 WILD-TYPE" "GSTA1 WILD-TYPE" "GSTA1 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"GSTA1 WILD-TYPE" "GSTA1 WILD-TYPE" "GSTA1 WILD-TYPE" "GSTA1 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"GSTA1 WILD-TYPE" "GSTA1 WILD-TYPE" "GSTA1 WILD-TYPE" "GSTA1 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"GSTA1 WILD-TYPE" "GSTA1 WILD-TYPE" "GSTA1 WILD-TYPE" "GSTA1 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"GSTA1 WILD-TYPE"   "GSTA1 MUTATED"   "GSTA1 MUTATED" "GSTA1 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"GSTA1 WILD-TYPE"   "GSTA1 MUTATED" "GSTA1 WILD-TYPE" "GSTA1 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"GSTA1 WILD-TYPE" "GSTA1 WILD-TYPE" "GSTA1 WILD-TYPE" "GSTA1 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"GSTA1 WILD-TYPE" "GSTA1 WILD-TYPE" "GSTA1 WILD-TYPE" "GSTA1 WILD-TYPE" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"GSTA1 WILD-TYPE" "GSTA1 WILD-TYPE" "GSTA1 WILD-TYPE" "GSTA1 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"GSTA1 WILD-TYPE" "GSTA1 WILD-TYPE" "GSTA1 WILD-TYPE"   "GSTA1 MUTATED" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"GSTA1 WILD-TYPE" "GSTA1 WILD-TYPE" "GSTA1 WILD-TYPE" "GSTA1 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"GSTA1 WILD-TYPE" "GSTA1 WILD-TYPE" "GSTA1 WILD-TYPE" "GSTA1 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"GSTA1 WILD-TYPE" "GSTA1 WILD-TYPE" "GSTA1 WILD-TYPE" "GSTA1 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"GSTA1 WILD-TYPE" "GSTA1 WILD-TYPE" "GSTA1 WILD-TYPE" "GSTA1 WILD-TYPE" 
     TCGA-US-A77J 
"GSTA1 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"GSTA1 WILD-TYPE" "GSTA1 WILD-TYPE" "GSTA1 WILD-TYPE"   "GSTA1 MUTATED" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"GSTA1 WILD-TYPE" "GSTA1 WILD-TYPE" "GSTA1 WILD-TYPE" "GSTA1 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"GSTA1 WILD-TYPE" "GSTA1 WILD-TYPE" "GSTA1 WILD-TYPE" "GSTA1 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"GSTA1 WILD-TYPE" "GSTA1 WILD-TYPE" "GSTA1 WILD-TYPE" "GSTA1 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"GSTA1 WILD-TYPE" "GSTA1 WILD-TYPE" "GSTA1 WILD-TYPE" "GSTA1 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"GSTA1 WILD-TYPE" "GSTA1 WILD-TYPE" "GSTA1 WILD-TYPE" "GSTA1 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"GSTA1 WILD-TYPE" "GSTA1 WILD-TYPE" "GSTA1 WILD-TYPE" "GSTA1 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"GSTA1 WILD-TYPE"   "GSTA1 MUTATED"   "GSTA1 MUTATED" "GSTA1 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"GSTA1 WILD-TYPE"   "GSTA1 MUTATED" "GSTA1 WILD-TYPE" "GSTA1 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"GSTA1 WILD-TYPE" "GSTA1 WILD-TYPE" "GSTA1 WILD-TYPE" "GSTA1 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"GSTA1 WILD-TYPE" "GSTA1 WILD-TYPE" "GSTA1 WILD-TYPE" "GSTA1 WILD-TYPE" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"GSTA1 WILD-TYPE" "GSTA1 WILD-TYPE" "GSTA1 WILD-TYPE" "GSTA1 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"GSTA1 WILD-TYPE" "GSTA1 WILD-TYPE" "GSTA1 WILD-TYPE"   "GSTA1 MUTATED" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"GSTA1 WILD-TYPE" "GSTA1 WILD-TYPE" "GSTA1 WILD-TYPE" "GSTA1 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"GSTA1 WILD-TYPE" "GSTA1 WILD-TYPE" "GSTA1 WILD-TYPE" "GSTA1 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"GSTA1 WILD-TYPE" "GSTA1 WILD-TYPE" "GSTA1 WILD-TYPE" "GSTA1 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"GSTA1 WILD-TYPE" "GSTA1 WILD-TYPE" "GSTA1 WILD-TYPE" "GSTA1 WILD-TYPE" 
     TCGA-US-A77J 
"GSTA1 WILD-TYPE" 
[1] "hr=" "1.9"
D257V2, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  GSTA1 MUTATED          1        0         1         3         0        0
  GSTA1 WILD-TYPE        0        4        10        48         2        3
D257V3, multiclass
                 vv
clus              T1+T2 T3+T4
  GSTA1 MUTATED       1     4
  GSTA1 WILD-TYPE     5    62
D257V4, multiclass
       clus
vv      GSTA1 MUTATED GSTA1 WILD-TYPE
  T1+T2             1               5
  T3+T4             4              62
D257V5, binary
                 cls
clus               0  1
  GSTA1 MUTATED    2  3
  GSTA1 WILD-TYPE 15 51
[1] "tbl2"
                 cls
clus              [,1] [,2]
  GSTA1 MUTATED      2    3
  GSTA1 WILD-TYPE   15   51
   clus
vv  GSTA1 MUTATED GSTA1 WILD-TYPE
  0             2              15
  1             3              51
                 vv
clus              M0 M1 MX
  GSTA1 MUTATED    2  0  3
  GSTA1 WILD-TYPE 37  3 27
D257V6, multiclass
    clus
vv   GSTA1 MUTATED GSTA1 WILD-TYPE
  M0             2              37
  M1             0               3
  MX             3              27
D257V7, binary
                 cls
clus               0  1
  GSTA1 MUTATED    2  3
  GSTA1 WILD-TYPE 34 33
[1] "tbl2"
                 cls
clus              [,1] [,2]
  GSTA1 MUTATED      2    3
  GSTA1 WILD-TYPE   34   33
        clus
vv       GSTA1 MUTATED GSTA1 WILD-TYPE
  FEMALE             2              34
  MALE               3              33
                 vv
clus              PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  GSTA1 MUTATED                                     4
  GSTA1 WILD-TYPE                                  61
                 vv
clus              PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  GSTA1 MUTATED                                       0
  GSTA1 WILD-TYPE                                     4
                 vv
clus              PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  GSTA1 MUTATED                                                  1
  GSTA1 WILD-TYPE                                                1
D257V8, multiclass
                                                  clus
vv                                                 GSTA1 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                          4
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                        0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA             1
                                                  clus
vv                                                 GSTA1 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                           61
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                          4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA               1
D257V9, continuous
[1] "Remove cluster labels:" "GSTA1 MUTATED"         
clus
  GSTA1 MUTATED GSTA1 WILD-TYPE 
              1              21 
     TCGA-F2-6880      TCGA-FB-A4P5      TCGA-FB-A4P6      TCGA-FB-A5VM 
"GSTA1 WILD-TYPE" "GSTA1 WILD-TYPE" "GSTA1 WILD-TYPE" "GSTA1 WILD-TYPE" 
     TCGA-FB-A78T      TCGA-FB-A7DR      TCGA-H6-8124      TCGA-H6-A45N 
"GSTA1 WILD-TYPE" "GSTA1 WILD-TYPE" "GSTA1 WILD-TYPE" "GSTA1 WILD-TYPE" 
     TCGA-H8-A6C1      TCGA-IB-7644      TCGA-IB-7649      TCGA-IB-7651 
"GSTA1 WILD-TYPE" "GSTA1 WILD-TYPE" "GSTA1 WILD-TYPE" "GSTA1 WILD-TYPE" 
     TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887      TCGA-IB-8126 
"GSTA1 WILD-TYPE" "GSTA1 WILD-TYPE" "GSTA1 WILD-TYPE" "GSTA1 WILD-TYPE" 
     TCGA-IB-8127      TCGA-IB-A5SS      TCGA-IB-A6UG      TCGA-LB-A7SX 
"GSTA1 WILD-TYPE" "GSTA1 WILD-TYPE" "GSTA1 WILD-TYPE" "GSTA1 WILD-TYPE" 
     TCGA-OE-A75W 
"GSTA1 WILD-TYPE" 
D257V10, continuous
[1] "Remove cluster labels:" "GSTA1 MUTATED"         
clus
  GSTA1 MUTATED GSTA1 WILD-TYPE 
              1              18 
     TCGA-FB-A4P5      TCGA-FB-A4P6      TCGA-FB-A5VM      TCGA-FB-A78T 
"GSTA1 WILD-TYPE" "GSTA1 WILD-TYPE" "GSTA1 WILD-TYPE" "GSTA1 WILD-TYPE" 
     TCGA-FB-A7DR      TCGA-H6-8124      TCGA-H8-A6C1      TCGA-IB-7644 
"GSTA1 WILD-TYPE" "GSTA1 WILD-TYPE" "GSTA1 WILD-TYPE" "GSTA1 WILD-TYPE" 
     TCGA-IB-7649      TCGA-IB-7651      TCGA-IB-7885      TCGA-IB-7886 
"GSTA1 WILD-TYPE" "GSTA1 WILD-TYPE" "GSTA1 WILD-TYPE" "GSTA1 WILD-TYPE" 
     TCGA-IB-8126      TCGA-IB-8127      TCGA-IB-A5SS      TCGA-IB-A6UG 
"GSTA1 WILD-TYPE" "GSTA1 WILD-TYPE" "GSTA1 WILD-TYPE" "GSTA1 WILD-TYPE" 
     TCGA-LB-A7SX      TCGA-OE-A75W 
"GSTA1 WILD-TYPE" "GSTA1 WILD-TYPE" 
                 vv
clus              R0 R1 RX
  GSTA1 MUTATED    3  2  0
  GSTA1 WILD-TYPE 39 22  2
D257V11, multiclass
    clus
vv   GSTA1 MUTATED GSTA1 WILD-TYPE
  R0             3              39
  R1             2              22
  RX             0               2
D257V12, continuous

Clustering(258) Variable = PDZD7 MUTATION ANALYSIS
D258V1, survival
                 sevent
clus2              0  1
  PDZD7 MUTATED    3  2
  PDZD7 WILD-TYPE 37 27
  PDZD7 MUTATED PDZD7 WILD-TYPE 
              5              64 
  PDZD7 MUTATED PDZD7 WILD-TYPE 
              2              27 
$`PDZD7 MUTATED`
TCGA-HZ-8002 TCGA-IB-7651 TCGA-IB-7887 TCGA-IB-8126 TCGA-Q3-A5QY 
        0.79        19.82         3.62         0.56        13.68 

$`PDZD7 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P5 TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR 
        0.13        11.93        12.66         2.47         0.03         5.46 
TCGA-FZ-5920 TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 
        2.01        36.20        20.81        12.89         7.66        13.02 
TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 
        7.89         0.92         0.66         0.13         0.26        12.13 
TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 
       11.87         0.26         0.62         0.69         3.95         0.92 
TCGA-HZ-8317 TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH 
        0.53         0.16         2.99         0.76         0.95         6.38 
TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 
        1.51        11.41        49.38         4.77        21.90        15.35 
TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 
       15.65        27.98         4.04        43.79        15.81        19.66 
TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP 
       16.04         3.85        15.98        17.16        10.82         9.86 
TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W 
        7.20        15.12         0.26         1.35         4.18         3.62 
TCGA-PZ-A5RE TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
        8.12        16.80        14.14        18.67 

  PDZD7 MUTATED PDZD7 WILD-TYPE 
           0.56            0.03 
  PDZD7 MUTATED PDZD7 WILD-TYPE 
          19.82           49.38 
  PDZD7 MUTATED PDZD7 WILD-TYPE 
          3.620           7.775 
[1] "0.6 - 19.8 (3.6)" "0.0 - 49.4 (7.8)"
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"PDZD7 WILD-TYPE" "PDZD7 WILD-TYPE" "PDZD7 WILD-TYPE" "PDZD7 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"PDZD7 WILD-TYPE" "PDZD7 WILD-TYPE" "PDZD7 WILD-TYPE" "PDZD7 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"PDZD7 WILD-TYPE" "PDZD7 WILD-TYPE" "PDZD7 WILD-TYPE" "PDZD7 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"PDZD7 WILD-TYPE" "PDZD7 WILD-TYPE" "PDZD7 WILD-TYPE" "PDZD7 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"PDZD7 WILD-TYPE" "PDZD7 WILD-TYPE" "PDZD7 WILD-TYPE" "PDZD7 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"PDZD7 WILD-TYPE" "PDZD7 WILD-TYPE" "PDZD7 WILD-TYPE" "PDZD7 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"PDZD7 WILD-TYPE" "PDZD7 WILD-TYPE" "PDZD7 WILD-TYPE"   "PDZD7 MUTATED" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"PDZD7 WILD-TYPE" "PDZD7 WILD-TYPE" "PDZD7 WILD-TYPE" "PDZD7 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"PDZD7 WILD-TYPE" "PDZD7 WILD-TYPE" "PDZD7 WILD-TYPE" "PDZD7 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"PDZD7 WILD-TYPE" "PDZD7 WILD-TYPE" "PDZD7 WILD-TYPE" "PDZD7 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"PDZD7 WILD-TYPE" "PDZD7 WILD-TYPE" "PDZD7 WILD-TYPE"   "PDZD7 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"PDZD7 WILD-TYPE" "PDZD7 WILD-TYPE" "PDZD7 WILD-TYPE"   "PDZD7 MUTATED" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"PDZD7 WILD-TYPE" "PDZD7 WILD-TYPE" "PDZD7 WILD-TYPE" "PDZD7 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"PDZD7 WILD-TYPE" "PDZD7 WILD-TYPE"   "PDZD7 MUTATED" "PDZD7 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"PDZD7 WILD-TYPE" "PDZD7 WILD-TYPE" "PDZD7 WILD-TYPE" "PDZD7 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"PDZD7 WILD-TYPE" "PDZD7 WILD-TYPE" "PDZD7 WILD-TYPE" "PDZD7 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"PDZD7 WILD-TYPE"   "PDZD7 MUTATED" "PDZD7 WILD-TYPE" "PDZD7 WILD-TYPE" 
     TCGA-US-A77J 
"PDZD7 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"PDZD7 WILD-TYPE" "PDZD7 WILD-TYPE" "PDZD7 WILD-TYPE" "PDZD7 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"PDZD7 WILD-TYPE" "PDZD7 WILD-TYPE" "PDZD7 WILD-TYPE" "PDZD7 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"PDZD7 WILD-TYPE" "PDZD7 WILD-TYPE" "PDZD7 WILD-TYPE" "PDZD7 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"PDZD7 WILD-TYPE" "PDZD7 WILD-TYPE" "PDZD7 WILD-TYPE" "PDZD7 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"PDZD7 WILD-TYPE" "PDZD7 WILD-TYPE" "PDZD7 WILD-TYPE" "PDZD7 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"PDZD7 WILD-TYPE" "PDZD7 WILD-TYPE" "PDZD7 WILD-TYPE" "PDZD7 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"PDZD7 WILD-TYPE" "PDZD7 WILD-TYPE" "PDZD7 WILD-TYPE"   "PDZD7 MUTATED" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"PDZD7 WILD-TYPE" "PDZD7 WILD-TYPE" "PDZD7 WILD-TYPE" "PDZD7 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"PDZD7 WILD-TYPE" "PDZD7 WILD-TYPE" "PDZD7 WILD-TYPE" "PDZD7 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"PDZD7 WILD-TYPE" "PDZD7 WILD-TYPE" "PDZD7 WILD-TYPE" "PDZD7 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"PDZD7 WILD-TYPE" "PDZD7 WILD-TYPE" "PDZD7 WILD-TYPE"   "PDZD7 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"PDZD7 WILD-TYPE" "PDZD7 WILD-TYPE" "PDZD7 WILD-TYPE"   "PDZD7 MUTATED" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"PDZD7 WILD-TYPE" "PDZD7 WILD-TYPE" "PDZD7 WILD-TYPE" "PDZD7 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"PDZD7 WILD-TYPE" "PDZD7 WILD-TYPE"   "PDZD7 MUTATED" "PDZD7 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"PDZD7 WILD-TYPE" "PDZD7 WILD-TYPE" "PDZD7 WILD-TYPE" "PDZD7 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"PDZD7 WILD-TYPE" "PDZD7 WILD-TYPE" "PDZD7 WILD-TYPE" "PDZD7 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"PDZD7 WILD-TYPE"   "PDZD7 MUTATED" "PDZD7 WILD-TYPE" "PDZD7 WILD-TYPE" 
     TCGA-US-A77J 
"PDZD7 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"PDZD7 WILD-TYPE" "PDZD7 WILD-TYPE" "PDZD7 WILD-TYPE" "PDZD7 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"PDZD7 WILD-TYPE" "PDZD7 WILD-TYPE" "PDZD7 WILD-TYPE" "PDZD7 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"PDZD7 WILD-TYPE" "PDZD7 WILD-TYPE" "PDZD7 WILD-TYPE" "PDZD7 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"PDZD7 WILD-TYPE" "PDZD7 WILD-TYPE" "PDZD7 WILD-TYPE" "PDZD7 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"PDZD7 WILD-TYPE" "PDZD7 WILD-TYPE" "PDZD7 WILD-TYPE" "PDZD7 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"PDZD7 WILD-TYPE" "PDZD7 WILD-TYPE" "PDZD7 WILD-TYPE" "PDZD7 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"PDZD7 WILD-TYPE" "PDZD7 WILD-TYPE" "PDZD7 WILD-TYPE"   "PDZD7 MUTATED" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"PDZD7 WILD-TYPE" "PDZD7 WILD-TYPE" "PDZD7 WILD-TYPE" "PDZD7 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"PDZD7 WILD-TYPE" "PDZD7 WILD-TYPE" "PDZD7 WILD-TYPE" "PDZD7 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"PDZD7 WILD-TYPE" "PDZD7 WILD-TYPE" "PDZD7 WILD-TYPE" "PDZD7 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"PDZD7 WILD-TYPE" "PDZD7 WILD-TYPE" "PDZD7 WILD-TYPE"   "PDZD7 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"PDZD7 WILD-TYPE" "PDZD7 WILD-TYPE" "PDZD7 WILD-TYPE"   "PDZD7 MUTATED" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"PDZD7 WILD-TYPE" "PDZD7 WILD-TYPE" "PDZD7 WILD-TYPE" "PDZD7 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"PDZD7 WILD-TYPE" "PDZD7 WILD-TYPE"   "PDZD7 MUTATED" "PDZD7 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"PDZD7 WILD-TYPE" "PDZD7 WILD-TYPE" "PDZD7 WILD-TYPE" "PDZD7 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"PDZD7 WILD-TYPE" "PDZD7 WILD-TYPE" "PDZD7 WILD-TYPE" "PDZD7 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"PDZD7 WILD-TYPE"   "PDZD7 MUTATED" "PDZD7 WILD-TYPE" "PDZD7 WILD-TYPE" 
     TCGA-US-A77J 
"PDZD7 WILD-TYPE" 
[1] "hr=" "1.3"
D258V2, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  PDZD7 MUTATED          0        0         0         4         1        0
  PDZD7 WILD-TYPE        1        4        11        47         1        3
D258V3, multiclass
                 vv
clus              T1+T2 T3+T4
  PDZD7 MUTATED       0     5
  PDZD7 WILD-TYPE     6    61
D258V4, multiclass
       clus
vv      PDZD7 MUTATED PDZD7 WILD-TYPE
  T1+T2             0               6
  T3+T4             5              61
D258V5, binary
                 cls
clus               0  1
  PDZD7 MUTATED    0  5
  PDZD7 WILD-TYPE 17 49
[1] "tbl2"
                 cls
clus              [,1] [,2]
  PDZD7 MUTATED      0    5
  PDZD7 WILD-TYPE   17   49
   clus
vv  PDZD7 MUTATED PDZD7 WILD-TYPE
  0             0              17
  1             5              49
                 vv
clus              M0 M1 MX
  PDZD7 MUTATED    3  0  2
  PDZD7 WILD-TYPE 36  3 28
D258V6, multiclass
    clus
vv   PDZD7 MUTATED PDZD7 WILD-TYPE
  M0             3              36
  M1             0               3
  MX             2              28
D258V7, binary
                 cls
clus               0  1
  PDZD7 MUTATED    3  2
  PDZD7 WILD-TYPE 33 34
[1] "tbl2"
                 cls
clus              [,1] [,2]
  PDZD7 MUTATED      3    2
  PDZD7 WILD-TYPE   33   34
        clus
vv       PDZD7 MUTATED PDZD7 WILD-TYPE
  FEMALE             3              33
  MALE               2              34
                 vv
clus              PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  PDZD7 MUTATED                                     5
  PDZD7 WILD-TYPE                                  60
                 vv
clus              PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  PDZD7 MUTATED                                       0
  PDZD7 WILD-TYPE                                     4
                 vv
clus              PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  PDZD7 MUTATED                                                  0
  PDZD7 WILD-TYPE                                                2
D258V8, multiclass
                                                  clus
vv                                                 PDZD7 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                          5
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                        0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA             0
                                                  clus
vv                                                 PDZD7 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                           60
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                          4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA               2
D258V9, continuous
D258V10, continuous
[1] "Remove cluster labels:" "PDZD7 MUTATED"         
clus
  PDZD7 MUTATED PDZD7 WILD-TYPE 
              2              17 
     TCGA-FB-A4P5      TCGA-FB-A4P6      TCGA-FB-A5VM      TCGA-FB-A78T 
"PDZD7 WILD-TYPE" "PDZD7 WILD-TYPE" "PDZD7 WILD-TYPE" "PDZD7 WILD-TYPE" 
     TCGA-FB-A7DR      TCGA-H6-8124      TCGA-H8-A6C1      TCGA-IB-7644 
"PDZD7 WILD-TYPE" "PDZD7 WILD-TYPE" "PDZD7 WILD-TYPE" "PDZD7 WILD-TYPE" 
     TCGA-IB-7649      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7891 
"PDZD7 WILD-TYPE" "PDZD7 WILD-TYPE" "PDZD7 WILD-TYPE" "PDZD7 WILD-TYPE" 
     TCGA-IB-8127      TCGA-IB-A5SS      TCGA-IB-A6UG      TCGA-LB-A7SX 
"PDZD7 WILD-TYPE" "PDZD7 WILD-TYPE" "PDZD7 WILD-TYPE" "PDZD7 WILD-TYPE" 
     TCGA-OE-A75W 
"PDZD7 WILD-TYPE" 
                 vv
clus              R0 R1 RX
  PDZD7 MUTATED    3  2  0
  PDZD7 WILD-TYPE 39 22  2
D258V11, multiclass
    clus
vv   PDZD7 MUTATED PDZD7 WILD-TYPE
  R0             3              39
  R1             2              22
  RX             0               2
D258V12, continuous

Clustering(259) Variable = SPRY4 MUTATION ANALYSIS
D259V1, survival
                 sevent
clus2              0  1
  SPRY4 MUTATED    2  1
  SPRY4 WILD-TYPE 38 28
  SPRY4 MUTATED SPRY4 WILD-TYPE 
              3              66 
  SPRY4 MUTATED SPRY4 WILD-TYPE 
              1              28 
$`SPRY4 MUTATED`
TCGA-HZ-7924 TCGA-HZ-8003 TCGA-IB-7887 
       12.13         0.69         3.62 

$`SPRY4 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P5 TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR 
        0.13        11.93        12.66         2.47         0.03         5.46 
TCGA-FZ-5920 TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 
        2.01        36.20        20.81        12.89         7.66        13.02 
TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7925 
        7.89         0.92         0.66         0.13         0.26        11.87 
TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 
        0.26         0.62         0.79         3.95         0.92         0.53 
TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK 
        0.16         2.99         0.76         0.95         6.38         1.51 
TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7651 
       11.41        49.38         4.77        21.90        15.35        19.82 
TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 
       15.65        27.98         4.04        43.79        15.81        19.66 
TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO 
       16.04         3.85        15.98         0.56        17.16        10.82 
TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX 
        9.86         7.20        15.12         0.26         1.35         4.18 
TCGA-OE-A75W TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
        3.62         8.12        13.68        16.80        14.14        18.67 

  SPRY4 MUTATED SPRY4 WILD-TYPE 
           0.69            0.03 
  SPRY4 MUTATED SPRY4 WILD-TYPE 
          12.13           49.38 
  SPRY4 MUTATED SPRY4 WILD-TYPE 
          3.620           7.775 
[1] "0.7 - 12.1 (3.6)" "0.0 - 49.4 (7.8)"
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"SPRY4 WILD-TYPE" "SPRY4 WILD-TYPE" "SPRY4 WILD-TYPE" "SPRY4 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"SPRY4 WILD-TYPE" "SPRY4 WILD-TYPE" "SPRY4 WILD-TYPE" "SPRY4 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"SPRY4 WILD-TYPE" "SPRY4 WILD-TYPE" "SPRY4 WILD-TYPE" "SPRY4 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"SPRY4 WILD-TYPE" "SPRY4 WILD-TYPE" "SPRY4 WILD-TYPE" "SPRY4 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"SPRY4 WILD-TYPE" "SPRY4 WILD-TYPE" "SPRY4 WILD-TYPE" "SPRY4 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"SPRY4 WILD-TYPE" "SPRY4 WILD-TYPE" "SPRY4 WILD-TYPE"   "SPRY4 MUTATED" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"SPRY4 WILD-TYPE" "SPRY4 WILD-TYPE" "SPRY4 WILD-TYPE" "SPRY4 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
  "SPRY4 MUTATED" "SPRY4 WILD-TYPE" "SPRY4 WILD-TYPE" "SPRY4 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"SPRY4 WILD-TYPE" "SPRY4 WILD-TYPE" "SPRY4 WILD-TYPE" "SPRY4 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"SPRY4 WILD-TYPE" "SPRY4 WILD-TYPE" "SPRY4 WILD-TYPE" "SPRY4 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"SPRY4 WILD-TYPE" "SPRY4 WILD-TYPE" "SPRY4 WILD-TYPE" "SPRY4 WILD-TYPE" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"SPRY4 WILD-TYPE" "SPRY4 WILD-TYPE" "SPRY4 WILD-TYPE"   "SPRY4 MUTATED" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"SPRY4 WILD-TYPE" "SPRY4 WILD-TYPE" "SPRY4 WILD-TYPE" "SPRY4 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"SPRY4 WILD-TYPE" "SPRY4 WILD-TYPE" "SPRY4 WILD-TYPE" "SPRY4 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"SPRY4 WILD-TYPE" "SPRY4 WILD-TYPE" "SPRY4 WILD-TYPE" "SPRY4 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"SPRY4 WILD-TYPE" "SPRY4 WILD-TYPE" "SPRY4 WILD-TYPE" "SPRY4 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"SPRY4 WILD-TYPE" "SPRY4 WILD-TYPE" "SPRY4 WILD-TYPE" "SPRY4 WILD-TYPE" 
     TCGA-US-A77J 
"SPRY4 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"SPRY4 WILD-TYPE" "SPRY4 WILD-TYPE" "SPRY4 WILD-TYPE" "SPRY4 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"SPRY4 WILD-TYPE" "SPRY4 WILD-TYPE" "SPRY4 WILD-TYPE" "SPRY4 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"SPRY4 WILD-TYPE" "SPRY4 WILD-TYPE" "SPRY4 WILD-TYPE" "SPRY4 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"SPRY4 WILD-TYPE" "SPRY4 WILD-TYPE" "SPRY4 WILD-TYPE" "SPRY4 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"SPRY4 WILD-TYPE" "SPRY4 WILD-TYPE" "SPRY4 WILD-TYPE" "SPRY4 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"SPRY4 WILD-TYPE" "SPRY4 WILD-TYPE" "SPRY4 WILD-TYPE"   "SPRY4 MUTATED" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"SPRY4 WILD-TYPE" "SPRY4 WILD-TYPE" "SPRY4 WILD-TYPE" "SPRY4 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
  "SPRY4 MUTATED" "SPRY4 WILD-TYPE" "SPRY4 WILD-TYPE" "SPRY4 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"SPRY4 WILD-TYPE" "SPRY4 WILD-TYPE" "SPRY4 WILD-TYPE" "SPRY4 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"SPRY4 WILD-TYPE" "SPRY4 WILD-TYPE" "SPRY4 WILD-TYPE" "SPRY4 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"SPRY4 WILD-TYPE" "SPRY4 WILD-TYPE" "SPRY4 WILD-TYPE" "SPRY4 WILD-TYPE" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"SPRY4 WILD-TYPE" "SPRY4 WILD-TYPE" "SPRY4 WILD-TYPE"   "SPRY4 MUTATED" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"SPRY4 WILD-TYPE" "SPRY4 WILD-TYPE" "SPRY4 WILD-TYPE" "SPRY4 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"SPRY4 WILD-TYPE" "SPRY4 WILD-TYPE" "SPRY4 WILD-TYPE" "SPRY4 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"SPRY4 WILD-TYPE" "SPRY4 WILD-TYPE" "SPRY4 WILD-TYPE" "SPRY4 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"SPRY4 WILD-TYPE" "SPRY4 WILD-TYPE" "SPRY4 WILD-TYPE" "SPRY4 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"SPRY4 WILD-TYPE" "SPRY4 WILD-TYPE" "SPRY4 WILD-TYPE" "SPRY4 WILD-TYPE" 
     TCGA-US-A77J 
"SPRY4 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"SPRY4 WILD-TYPE" "SPRY4 WILD-TYPE" "SPRY4 WILD-TYPE" "SPRY4 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"SPRY4 WILD-TYPE" "SPRY4 WILD-TYPE" "SPRY4 WILD-TYPE" "SPRY4 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"SPRY4 WILD-TYPE" "SPRY4 WILD-TYPE" "SPRY4 WILD-TYPE" "SPRY4 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"SPRY4 WILD-TYPE" "SPRY4 WILD-TYPE" "SPRY4 WILD-TYPE" "SPRY4 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"SPRY4 WILD-TYPE" "SPRY4 WILD-TYPE" "SPRY4 WILD-TYPE" "SPRY4 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"SPRY4 WILD-TYPE" "SPRY4 WILD-TYPE" "SPRY4 WILD-TYPE"   "SPRY4 MUTATED" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"SPRY4 WILD-TYPE" "SPRY4 WILD-TYPE" "SPRY4 WILD-TYPE" "SPRY4 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
  "SPRY4 MUTATED" "SPRY4 WILD-TYPE" "SPRY4 WILD-TYPE" "SPRY4 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"SPRY4 WILD-TYPE" "SPRY4 WILD-TYPE" "SPRY4 WILD-TYPE" "SPRY4 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"SPRY4 WILD-TYPE" "SPRY4 WILD-TYPE" "SPRY4 WILD-TYPE" "SPRY4 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"SPRY4 WILD-TYPE" "SPRY4 WILD-TYPE" "SPRY4 WILD-TYPE" "SPRY4 WILD-TYPE" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"SPRY4 WILD-TYPE" "SPRY4 WILD-TYPE" "SPRY4 WILD-TYPE"   "SPRY4 MUTATED" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"SPRY4 WILD-TYPE" "SPRY4 WILD-TYPE" "SPRY4 WILD-TYPE" "SPRY4 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"SPRY4 WILD-TYPE" "SPRY4 WILD-TYPE" "SPRY4 WILD-TYPE" "SPRY4 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"SPRY4 WILD-TYPE" "SPRY4 WILD-TYPE" "SPRY4 WILD-TYPE" "SPRY4 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"SPRY4 WILD-TYPE" "SPRY4 WILD-TYPE" "SPRY4 WILD-TYPE" "SPRY4 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"SPRY4 WILD-TYPE" "SPRY4 WILD-TYPE" "SPRY4 WILD-TYPE" "SPRY4 WILD-TYPE" 
     TCGA-US-A77J 
"SPRY4 WILD-TYPE" 
[1] "hr=" "2.2"
D259V2, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  SPRY4 MUTATED          0        0         1         2         0        0
  SPRY4 WILD-TYPE        1        4        10        49         2        3
D259V3, multiclass
                 vv
clus              T1+T2 T3+T4
  SPRY4 MUTATED       0     3
  SPRY4 WILD-TYPE     6    63
D259V4, multiclass
       clus
vv      SPRY4 MUTATED SPRY4 WILD-TYPE
  T1+T2             0               6
  T3+T4             3              63
D259V5, binary
                 cls
clus               0  1
  SPRY4 MUTATED    1  2
  SPRY4 WILD-TYPE 16 52
[1] "tbl2"
                 cls
clus              [,1] [,2]
  SPRY4 MUTATED      1    2
  SPRY4 WILD-TYPE   16   52
   clus
vv  SPRY4 MUTATED SPRY4 WILD-TYPE
  0             1              16
  1             2              52
                 vv
clus              M0 M1 MX
  SPRY4 MUTATED    1  0  2
  SPRY4 WILD-TYPE 38  3 28
D259V6, multiclass
    clus
vv   SPRY4 MUTATED SPRY4 WILD-TYPE
  M0             1              38
  M1             0               3
  MX             2              28
D259V7, binary
                 cls
clus               0  1
  SPRY4 MUTATED    3  0
  SPRY4 WILD-TYPE 33 36
[1] "tbl2"
                 cls
clus              [,1] [,2]
  SPRY4 MUTATED      3    0
  SPRY4 WILD-TYPE   33   36
        clus
vv       SPRY4 MUTATED SPRY4 WILD-TYPE
  FEMALE             3              33
  MALE               0              36
                 vv
clus              PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  SPRY4 MUTATED                                     3
  SPRY4 WILD-TYPE                                  62
                 vv
clus              PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  SPRY4 MUTATED                                       0
  SPRY4 WILD-TYPE                                     4
                 vv
clus              PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  SPRY4 MUTATED                                                  0
  SPRY4 WILD-TYPE                                                2
D259V8, multiclass
                                                  clus
vv                                                 SPRY4 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                          3
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                        0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA             0
                                                  clus
vv                                                 SPRY4 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                           62
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                          4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA               2
D259V9, continuous
[1] "Remove cluster labels:" "SPRY4 MUTATED"         
clus
  SPRY4 MUTATED SPRY4 WILD-TYPE 
              1              21 
     TCGA-F2-6880      TCGA-FB-A4P5      TCGA-FB-A4P6      TCGA-FB-A5VM 
"SPRY4 WILD-TYPE" "SPRY4 WILD-TYPE" "SPRY4 WILD-TYPE" "SPRY4 WILD-TYPE" 
     TCGA-FB-A78T      TCGA-FB-A7DR      TCGA-H6-8124      TCGA-H6-A45N 
"SPRY4 WILD-TYPE" "SPRY4 WILD-TYPE" "SPRY4 WILD-TYPE" "SPRY4 WILD-TYPE" 
     TCGA-H8-A6C1      TCGA-IB-7644      TCGA-IB-7649      TCGA-IB-7651 
"SPRY4 WILD-TYPE" "SPRY4 WILD-TYPE" "SPRY4 WILD-TYPE" "SPRY4 WILD-TYPE" 
     TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7891      TCGA-IB-8126 
"SPRY4 WILD-TYPE" "SPRY4 WILD-TYPE" "SPRY4 WILD-TYPE" "SPRY4 WILD-TYPE" 
     TCGA-IB-8127      TCGA-IB-A5SS      TCGA-IB-A6UG      TCGA-LB-A7SX 
"SPRY4 WILD-TYPE" "SPRY4 WILD-TYPE" "SPRY4 WILD-TYPE" "SPRY4 WILD-TYPE" 
     TCGA-OE-A75W 
"SPRY4 WILD-TYPE" 
D259V10, continuous
                 vv
clus              R0 R1 RX
  SPRY4 MUTATED    2  1  0
  SPRY4 WILD-TYPE 40 23  2
D259V11, multiclass
    clus
vv   SPRY4 MUTATED SPRY4 WILD-TYPE
  R0             2              40
  R1             1              23
  RX             0               2
D259V12, continuous

Clustering(260) Variable = ZMYND19 MUTATION ANALYSIS
D260V1, survival
                   sevent
clus2                0  1
  ZMYND19 MUTATED    1  3
  ZMYND19 WILD-TYPE 39 26
  ZMYND19 MUTATED ZMYND19 WILD-TYPE 
                4                65 
  ZMYND19 MUTATED ZMYND19 WILD-TYPE 
                3                26 
$`ZMYND19 MUTATED`
TCGA-IB-7651 TCGA-IB-7888 TCGA-IB-8127 TCGA-US-A779 
       19.82        43.79        17.16        16.80 

$`ZMYND19 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P5 TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR 
        0.13        11.93        12.66         2.47         0.03         5.46 
TCGA-FZ-5920 TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 
        2.01        36.20        20.81        12.89         7.66        13.02 
TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 
        7.89         0.92         0.66         0.13         0.26        12.13 
TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 
       11.87         0.26         0.62         0.79         0.69         3.95 
TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H 
        0.92         0.53         0.16         2.99         0.76         0.95 
TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 
        6.38         1.51        11.41        49.38         4.77        21.90 
TCGA-IB-7649 TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7889 
       15.35        15.65        27.98         4.04         3.62        15.81 
TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-A5SO 
       19.66        16.04         3.85        15.98         0.56        10.82 
TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX 
        9.86         7.20        15.12         0.26         1.35         4.18 
TCGA-OE-A75W TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A77E TCGA-US-A77J 
        3.62         8.12        13.68        14.14        18.67 

  ZMYND19 MUTATED ZMYND19 WILD-TYPE 
            16.80              0.03 
  ZMYND19 MUTATED ZMYND19 WILD-TYPE 
            43.79             49.38 
  ZMYND19 MUTATED ZMYND19 WILD-TYPE 
            18.49              7.10 
[1] "16.8 - 43.8 (18.5)" "0.0 - 49.4 (7.1)"  
       TCGA-F2-6879        TCGA-F2-6880        TCGA-F2-7273        TCGA-F2-7276 
"ZMYND19 WILD-TYPE" "ZMYND19 WILD-TYPE" "ZMYND19 WILD-TYPE" "ZMYND19 WILD-TYPE" 
       TCGA-F2-A44G        TCGA-F2-A44H        TCGA-FB-A4P5        TCGA-FB-A4P6 
"ZMYND19 WILD-TYPE" "ZMYND19 WILD-TYPE" "ZMYND19 WILD-TYPE" "ZMYND19 WILD-TYPE" 
       TCGA-FB-A545        TCGA-FB-A5VM        TCGA-FB-A78T        TCGA-FB-A7DR 
"ZMYND19 WILD-TYPE" "ZMYND19 WILD-TYPE" "ZMYND19 WILD-TYPE" "ZMYND19 WILD-TYPE" 
       TCGA-FZ-5920        TCGA-FZ-5922        TCGA-FZ-5923        TCGA-H6-8124 
"ZMYND19 WILD-TYPE" "ZMYND19 WILD-TYPE" "ZMYND19 WILD-TYPE" "ZMYND19 WILD-TYPE" 
       TCGA-H6-A45N        TCGA-H8-A6C1        TCGA-HZ-7289        TCGA-HZ-7918 
"ZMYND19 WILD-TYPE" "ZMYND19 WILD-TYPE" "ZMYND19 WILD-TYPE" "ZMYND19 WILD-TYPE" 
       TCGA-HZ-7919        TCGA-HZ-7922        TCGA-HZ-7923        TCGA-HZ-7924 
"ZMYND19 WILD-TYPE" "ZMYND19 WILD-TYPE" "ZMYND19 WILD-TYPE" "ZMYND19 WILD-TYPE" 
       TCGA-HZ-7925        TCGA-HZ-7926        TCGA-HZ-8001        TCGA-HZ-8002 
"ZMYND19 WILD-TYPE" "ZMYND19 WILD-TYPE" "ZMYND19 WILD-TYPE" "ZMYND19 WILD-TYPE" 
       TCGA-HZ-8003        TCGA-HZ-8005        TCGA-HZ-8315        TCGA-HZ-8317 
"ZMYND19 WILD-TYPE" "ZMYND19 WILD-TYPE" "ZMYND19 WILD-TYPE" "ZMYND19 WILD-TYPE" 
       TCGA-HZ-8636        TCGA-HZ-8638        TCGA-HZ-A49G        TCGA-HZ-A49H 
"ZMYND19 WILD-TYPE" "ZMYND19 WILD-TYPE" "ZMYND19 WILD-TYPE" "ZMYND19 WILD-TYPE" 
       TCGA-HZ-A4BH        TCGA-HZ-A4BK        TCGA-IB-7644        TCGA-IB-7645 
"ZMYND19 WILD-TYPE" "ZMYND19 WILD-TYPE" "ZMYND19 WILD-TYPE" "ZMYND19 WILD-TYPE" 
       TCGA-IB-7646        TCGA-IB-7647        TCGA-IB-7649        TCGA-IB-7651 
"ZMYND19 WILD-TYPE" "ZMYND19 WILD-TYPE" "ZMYND19 WILD-TYPE"   "ZMYND19 MUTATED" 
       TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-7886        TCGA-IB-7887 
"ZMYND19 WILD-TYPE" "ZMYND19 WILD-TYPE" "ZMYND19 WILD-TYPE" "ZMYND19 WILD-TYPE" 
       TCGA-IB-7888        TCGA-IB-7889        TCGA-IB-7890        TCGA-IB-7891 
  "ZMYND19 MUTATED" "ZMYND19 WILD-TYPE" "ZMYND19 WILD-TYPE" "ZMYND19 WILD-TYPE" 
       TCGA-IB-7893        TCGA-IB-7897        TCGA-IB-8126        TCGA-IB-8127 
"ZMYND19 WILD-TYPE" "ZMYND19 WILD-TYPE" "ZMYND19 WILD-TYPE"   "ZMYND19 MUTATED" 
       TCGA-IB-A5SO        TCGA-IB-A5SP        TCGA-IB-A5SQ        TCGA-IB-A5SS 
"ZMYND19 WILD-TYPE" "ZMYND19 WILD-TYPE" "ZMYND19 WILD-TYPE" "ZMYND19 WILD-TYPE" 
       TCGA-IB-A5ST        TCGA-IB-A6UG        TCGA-LB-A7SX        TCGA-OE-A75W 
"ZMYND19 WILD-TYPE" "ZMYND19 WILD-TYPE" "ZMYND19 WILD-TYPE" "ZMYND19 WILD-TYPE" 
       TCGA-PZ-A5RE        TCGA-Q3-A5QY        TCGA-US-A779        TCGA-US-A77E 
"ZMYND19 WILD-TYPE" "ZMYND19 WILD-TYPE"   "ZMYND19 MUTATED" "ZMYND19 WILD-TYPE" 
       TCGA-US-A77J 
"ZMYND19 WILD-TYPE" 
       TCGA-F2-6879        TCGA-F2-6880        TCGA-F2-7273        TCGA-F2-7276 
"ZMYND19 WILD-TYPE" "ZMYND19 WILD-TYPE" "ZMYND19 WILD-TYPE" "ZMYND19 WILD-TYPE" 
       TCGA-F2-A44G        TCGA-F2-A44H        TCGA-FB-A4P5        TCGA-FB-A4P6 
"ZMYND19 WILD-TYPE" "ZMYND19 WILD-TYPE" "ZMYND19 WILD-TYPE" "ZMYND19 WILD-TYPE" 
       TCGA-FB-A545        TCGA-FB-A5VM        TCGA-FB-A78T        TCGA-FB-A7DR 
"ZMYND19 WILD-TYPE" "ZMYND19 WILD-TYPE" "ZMYND19 WILD-TYPE" "ZMYND19 WILD-TYPE" 
       TCGA-FZ-5920        TCGA-FZ-5922        TCGA-FZ-5923        TCGA-H6-8124 
"ZMYND19 WILD-TYPE" "ZMYND19 WILD-TYPE" "ZMYND19 WILD-TYPE" "ZMYND19 WILD-TYPE" 
       TCGA-H6-A45N        TCGA-H8-A6C1        TCGA-HZ-7289        TCGA-HZ-7918 
"ZMYND19 WILD-TYPE" "ZMYND19 WILD-TYPE" "ZMYND19 WILD-TYPE" "ZMYND19 WILD-TYPE" 
       TCGA-HZ-7919        TCGA-HZ-7922        TCGA-HZ-7923        TCGA-HZ-7924 
"ZMYND19 WILD-TYPE" "ZMYND19 WILD-TYPE" "ZMYND19 WILD-TYPE" "ZMYND19 WILD-TYPE" 
       TCGA-HZ-7925        TCGA-HZ-7926        TCGA-HZ-8001        TCGA-HZ-8002 
"ZMYND19 WILD-TYPE" "ZMYND19 WILD-TYPE" "ZMYND19 WILD-TYPE" "ZMYND19 WILD-TYPE" 
       TCGA-HZ-8003        TCGA-HZ-8005        TCGA-HZ-8315        TCGA-HZ-8317 
"ZMYND19 WILD-TYPE" "ZMYND19 WILD-TYPE" "ZMYND19 WILD-TYPE" "ZMYND19 WILD-TYPE" 
       TCGA-HZ-8636        TCGA-HZ-8638        TCGA-HZ-A49G        TCGA-HZ-A49H 
"ZMYND19 WILD-TYPE" "ZMYND19 WILD-TYPE" "ZMYND19 WILD-TYPE" "ZMYND19 WILD-TYPE" 
       TCGA-HZ-A4BH        TCGA-HZ-A4BK        TCGA-IB-7644        TCGA-IB-7645 
"ZMYND19 WILD-TYPE" "ZMYND19 WILD-TYPE" "ZMYND19 WILD-TYPE" "ZMYND19 WILD-TYPE" 
       TCGA-IB-7646        TCGA-IB-7647        TCGA-IB-7649        TCGA-IB-7651 
"ZMYND19 WILD-TYPE" "ZMYND19 WILD-TYPE" "ZMYND19 WILD-TYPE"   "ZMYND19 MUTATED" 
       TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-7886        TCGA-IB-7887 
"ZMYND19 WILD-TYPE" "ZMYND19 WILD-TYPE" "ZMYND19 WILD-TYPE" "ZMYND19 WILD-TYPE" 
       TCGA-IB-7888        TCGA-IB-7889        TCGA-IB-7890        TCGA-IB-7891 
  "ZMYND19 MUTATED" "ZMYND19 WILD-TYPE" "ZMYND19 WILD-TYPE" "ZMYND19 WILD-TYPE" 
       TCGA-IB-7893        TCGA-IB-7897        TCGA-IB-8126        TCGA-IB-8127 
"ZMYND19 WILD-TYPE" "ZMYND19 WILD-TYPE" "ZMYND19 WILD-TYPE"   "ZMYND19 MUTATED" 
       TCGA-IB-A5SO        TCGA-IB-A5SP        TCGA-IB-A5SQ        TCGA-IB-A5SS 
"ZMYND19 WILD-TYPE" "ZMYND19 WILD-TYPE" "ZMYND19 WILD-TYPE" "ZMYND19 WILD-TYPE" 
       TCGA-IB-A5ST        TCGA-IB-A6UG        TCGA-LB-A7SX        TCGA-OE-A75W 
"ZMYND19 WILD-TYPE" "ZMYND19 WILD-TYPE" "ZMYND19 WILD-TYPE" "ZMYND19 WILD-TYPE" 
       TCGA-PZ-A5RE        TCGA-Q3-A5QY        TCGA-US-A779        TCGA-US-A77E 
"ZMYND19 WILD-TYPE" "ZMYND19 WILD-TYPE"   "ZMYND19 MUTATED" "ZMYND19 WILD-TYPE" 
       TCGA-US-A77J 
"ZMYND19 WILD-TYPE" 
       TCGA-F2-6879        TCGA-F2-6880        TCGA-F2-7273        TCGA-F2-7276 
"ZMYND19 WILD-TYPE" "ZMYND19 WILD-TYPE" "ZMYND19 WILD-TYPE" "ZMYND19 WILD-TYPE" 
       TCGA-F2-A44G        TCGA-F2-A44H        TCGA-FB-A4P5        TCGA-FB-A4P6 
"ZMYND19 WILD-TYPE" "ZMYND19 WILD-TYPE" "ZMYND19 WILD-TYPE" "ZMYND19 WILD-TYPE" 
       TCGA-FB-A545        TCGA-FB-A5VM        TCGA-FB-A78T        TCGA-FB-A7DR 
"ZMYND19 WILD-TYPE" "ZMYND19 WILD-TYPE" "ZMYND19 WILD-TYPE" "ZMYND19 WILD-TYPE" 
       TCGA-FZ-5920        TCGA-FZ-5922        TCGA-FZ-5923        TCGA-H6-8124 
"ZMYND19 WILD-TYPE" "ZMYND19 WILD-TYPE" "ZMYND19 WILD-TYPE" "ZMYND19 WILD-TYPE" 
       TCGA-H6-A45N        TCGA-H8-A6C1        TCGA-HZ-7289        TCGA-HZ-7918 
"ZMYND19 WILD-TYPE" "ZMYND19 WILD-TYPE" "ZMYND19 WILD-TYPE" "ZMYND19 WILD-TYPE" 
       TCGA-HZ-7919        TCGA-HZ-7922        TCGA-HZ-7923        TCGA-HZ-7924 
"ZMYND19 WILD-TYPE" "ZMYND19 WILD-TYPE" "ZMYND19 WILD-TYPE" "ZMYND19 WILD-TYPE" 
       TCGA-HZ-7925        TCGA-HZ-7926        TCGA-HZ-8001        TCGA-HZ-8002 
"ZMYND19 WILD-TYPE" "ZMYND19 WILD-TYPE" "ZMYND19 WILD-TYPE" "ZMYND19 WILD-TYPE" 
       TCGA-HZ-8003        TCGA-HZ-8005        TCGA-HZ-8315        TCGA-HZ-8317 
"ZMYND19 WILD-TYPE" "ZMYND19 WILD-TYPE" "ZMYND19 WILD-TYPE" "ZMYND19 WILD-TYPE" 
       TCGA-HZ-8636        TCGA-HZ-8638        TCGA-HZ-A49G        TCGA-HZ-A49H 
"ZMYND19 WILD-TYPE" "ZMYND19 WILD-TYPE" "ZMYND19 WILD-TYPE" "ZMYND19 WILD-TYPE" 
       TCGA-HZ-A4BH        TCGA-HZ-A4BK        TCGA-IB-7644        TCGA-IB-7645 
"ZMYND19 WILD-TYPE" "ZMYND19 WILD-TYPE" "ZMYND19 WILD-TYPE" "ZMYND19 WILD-TYPE" 
       TCGA-IB-7646        TCGA-IB-7647        TCGA-IB-7649        TCGA-IB-7651 
"ZMYND19 WILD-TYPE" "ZMYND19 WILD-TYPE" "ZMYND19 WILD-TYPE"   "ZMYND19 MUTATED" 
       TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-7886        TCGA-IB-7887 
"ZMYND19 WILD-TYPE" "ZMYND19 WILD-TYPE" "ZMYND19 WILD-TYPE" "ZMYND19 WILD-TYPE" 
       TCGA-IB-7888        TCGA-IB-7889        TCGA-IB-7890        TCGA-IB-7891 
  "ZMYND19 MUTATED" "ZMYND19 WILD-TYPE" "ZMYND19 WILD-TYPE" "ZMYND19 WILD-TYPE" 
       TCGA-IB-7893        TCGA-IB-7897        TCGA-IB-8126        TCGA-IB-8127 
"ZMYND19 WILD-TYPE" "ZMYND19 WILD-TYPE" "ZMYND19 WILD-TYPE"   "ZMYND19 MUTATED" 
       TCGA-IB-A5SO        TCGA-IB-A5SP        TCGA-IB-A5SQ        TCGA-IB-A5SS 
"ZMYND19 WILD-TYPE" "ZMYND19 WILD-TYPE" "ZMYND19 WILD-TYPE" "ZMYND19 WILD-TYPE" 
       TCGA-IB-A5ST        TCGA-IB-A6UG        TCGA-LB-A7SX        TCGA-OE-A75W 
"ZMYND19 WILD-TYPE" "ZMYND19 WILD-TYPE" "ZMYND19 WILD-TYPE" "ZMYND19 WILD-TYPE" 
       TCGA-PZ-A5RE        TCGA-Q3-A5QY        TCGA-US-A779        TCGA-US-A77E 
"ZMYND19 WILD-TYPE" "ZMYND19 WILD-TYPE"   "ZMYND19 MUTATED" "ZMYND19 WILD-TYPE" 
       TCGA-US-A77J 
"ZMYND19 WILD-TYPE" 
[1] "hr=" "1.9"
D260V2, continuous
                   vv
clus                STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  ZMYND19 MUTATED          0        0         1         3         0        0
  ZMYND19 WILD-TYPE        1        4        10        48         2        3
D260V3, multiclass
                   vv
clus                T1+T2 T3+T4
  ZMYND19 MUTATED       0     4
  ZMYND19 WILD-TYPE     6    62
D260V4, multiclass
       clus
vv      ZMYND19 MUTATED ZMYND19 WILD-TYPE
  T1+T2               0                 6
  T3+T4               4                62
D260V5, binary
                   cls
clus                 0  1
  ZMYND19 MUTATED    1  3
  ZMYND19 WILD-TYPE 16 51
[1] "tbl2"
                   cls
clus                [,1] [,2]
  ZMYND19 MUTATED      1    3
  ZMYND19 WILD-TYPE   16   51
   clus
vv  ZMYND19 MUTATED ZMYND19 WILD-TYPE
  0               1                16
  1               3                51
                   vv
clus                M0 M1 MX
  ZMYND19 MUTATED    3  0  1
  ZMYND19 WILD-TYPE 36  3 29
D260V6, multiclass
    clus
vv   ZMYND19 MUTATED ZMYND19 WILD-TYPE
  M0               3                36
  M1               0                 3
  MX               1                29
D260V7, binary
                   cls
clus                 0  1
  ZMYND19 MUTATED    3  1
  ZMYND19 WILD-TYPE 33 35
[1] "tbl2"
                   cls
clus                [,1] [,2]
  ZMYND19 MUTATED      3    1
  ZMYND19 WILD-TYPE   33   35
        clus
vv       ZMYND19 MUTATED ZMYND19 WILD-TYPE
  FEMALE               3                33
  MALE                 1                35
                   vv
clus                PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  ZMYND19 MUTATED                                     4
  ZMYND19 WILD-TYPE                                  61
                   vv
clus                PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  ZMYND19 MUTATED                                       0
  ZMYND19 WILD-TYPE                                     4
                   vv
clus                PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  ZMYND19 MUTATED                                                  0
  ZMYND19 WILD-TYPE                                                2
D260V8, multiclass
                                                  clus
vv                                                 ZMYND19 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                            4
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                          0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA               0
                                                  clus
vv                                                 ZMYND19 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                             61
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                            4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                 2
D260V9, continuous
[1] "Remove cluster labels:" "ZMYND19 MUTATED"       
clus
  ZMYND19 MUTATED ZMYND19 WILD-TYPE 
                2                20 
       TCGA-F2-6880        TCGA-FB-A4P5        TCGA-FB-A4P6        TCGA-FB-A5VM 
"ZMYND19 WILD-TYPE" "ZMYND19 WILD-TYPE" "ZMYND19 WILD-TYPE" "ZMYND19 WILD-TYPE" 
       TCGA-FB-A78T        TCGA-FB-A7DR        TCGA-H6-8124        TCGA-H6-A45N 
"ZMYND19 WILD-TYPE" "ZMYND19 WILD-TYPE" "ZMYND19 WILD-TYPE" "ZMYND19 WILD-TYPE" 
       TCGA-H8-A6C1        TCGA-IB-7644        TCGA-IB-7649        TCGA-IB-7885 
"ZMYND19 WILD-TYPE" "ZMYND19 WILD-TYPE" "ZMYND19 WILD-TYPE" "ZMYND19 WILD-TYPE" 
       TCGA-IB-7886        TCGA-IB-7887        TCGA-IB-7891        TCGA-IB-8126 
"ZMYND19 WILD-TYPE" "ZMYND19 WILD-TYPE" "ZMYND19 WILD-TYPE" "ZMYND19 WILD-TYPE" 
       TCGA-IB-A5SS        TCGA-IB-A6UG        TCGA-LB-A7SX        TCGA-OE-A75W 
"ZMYND19 WILD-TYPE" "ZMYND19 WILD-TYPE" "ZMYND19 WILD-TYPE" "ZMYND19 WILD-TYPE" 
D260V10, continuous
[1] "Remove cluster labels:" "ZMYND19 MUTATED"       
clus
  ZMYND19 MUTATED ZMYND19 WILD-TYPE 
                2                17 
       TCGA-FB-A4P5        TCGA-FB-A4P6        TCGA-FB-A5VM        TCGA-FB-A78T 
"ZMYND19 WILD-TYPE" "ZMYND19 WILD-TYPE" "ZMYND19 WILD-TYPE" "ZMYND19 WILD-TYPE" 
       TCGA-FB-A7DR        TCGA-H6-8124        TCGA-H8-A6C1        TCGA-IB-7644 
"ZMYND19 WILD-TYPE" "ZMYND19 WILD-TYPE" "ZMYND19 WILD-TYPE" "ZMYND19 WILD-TYPE" 
       TCGA-IB-7649        TCGA-IB-7885        TCGA-IB-7886        TCGA-IB-7891 
"ZMYND19 WILD-TYPE" "ZMYND19 WILD-TYPE" "ZMYND19 WILD-TYPE" "ZMYND19 WILD-TYPE" 
       TCGA-IB-8126        TCGA-IB-A5SS        TCGA-IB-A6UG        TCGA-LB-A7SX 
"ZMYND19 WILD-TYPE" "ZMYND19 WILD-TYPE" "ZMYND19 WILD-TYPE" "ZMYND19 WILD-TYPE" 
       TCGA-OE-A75W 
"ZMYND19 WILD-TYPE" 
                   vv
clus                R0 R1 RX
  ZMYND19 MUTATED    3  1  0
  ZMYND19 WILD-TYPE 39 23  2
D260V11, multiclass
    clus
vv   ZMYND19 MUTATED ZMYND19 WILD-TYPE
  R0               3                39
  R1               1                23
  RX               0                 2
D260V12, continuous

Clustering(261) Variable = SULT1B1 MUTATION ANALYSIS
D261V1, survival
                   sevent
clus2                0  1
  SULT1B1 MUTATED    1  2
  SULT1B1 WILD-TYPE 39 27
  SULT1B1 MUTATED SULT1B1 WILD-TYPE 
                3                66 
  SULT1B1 MUTATED SULT1B1 WILD-TYPE 
                2                27 
$`SULT1B1 MUTATED`
TCGA-IB-7651 TCGA-IB-7891 TCGA-IB-7893 
       19.82        16.04         3.85 

$`SULT1B1 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P5 TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR 
        0.13        11.93        12.66         2.47         0.03         5.46 
TCGA-FZ-5920 TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 
        2.01        36.20        20.81        12.89         7.66        13.02 
TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 
        7.89         0.92         0.66         0.13         0.26        12.13 
TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 
       11.87         0.26         0.62         0.79         0.69         3.95 
TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H 
        0.92         0.53         0.16         2.99         0.76         0.95 
TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 
        6.38         1.51        11.41        49.38         4.77        21.90 
TCGA-IB-7649 TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7888 
       15.35        15.65        27.98         4.04         3.62        43.79 
TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO 
       15.81        19.66        15.98         0.56        17.16        10.82 
TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX 
        9.86         7.20        15.12         0.26         1.35         4.18 
TCGA-OE-A75W TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
        3.62         8.12        13.68        16.80        14.14        18.67 

  SULT1B1 MUTATED SULT1B1 WILD-TYPE 
             3.85              0.03 
  SULT1B1 MUTATED SULT1B1 WILD-TYPE 
            19.82             49.38 
  SULT1B1 MUTATED SULT1B1 WILD-TYPE 
            16.04              7.43 
[1] "3.9 - 19.8 (16.0)" "0.0 - 49.4 (7.4)" 
       TCGA-F2-6879        TCGA-F2-6880        TCGA-F2-7273        TCGA-F2-7276 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-F2-A44G        TCGA-F2-A44H        TCGA-FB-A4P5        TCGA-FB-A4P6 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-FB-A545        TCGA-FB-A5VM        TCGA-FB-A78T        TCGA-FB-A7DR 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-FZ-5920        TCGA-FZ-5922        TCGA-FZ-5923        TCGA-H6-8124 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-H6-A45N        TCGA-H8-A6C1        TCGA-HZ-7289        TCGA-HZ-7918 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-HZ-7919        TCGA-HZ-7922        TCGA-HZ-7923        TCGA-HZ-7924 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-HZ-7925        TCGA-HZ-7926        TCGA-HZ-8001        TCGA-HZ-8002 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-HZ-8003        TCGA-HZ-8005        TCGA-HZ-8315        TCGA-HZ-8317 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-HZ-8636        TCGA-HZ-8638        TCGA-HZ-A49G        TCGA-HZ-A49H 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-HZ-A4BH        TCGA-HZ-A4BK        TCGA-IB-7644        TCGA-IB-7645 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-IB-7646        TCGA-IB-7647        TCGA-IB-7649        TCGA-IB-7651 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE"   "SULT1B1 MUTATED" 
       TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-7886        TCGA-IB-7887 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-IB-7888        TCGA-IB-7889        TCGA-IB-7890        TCGA-IB-7891 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE"   "SULT1B1 MUTATED" 
       TCGA-IB-7893        TCGA-IB-7897        TCGA-IB-8126        TCGA-IB-8127 
  "SULT1B1 MUTATED" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-IB-A5SO        TCGA-IB-A5SP        TCGA-IB-A5SQ        TCGA-IB-A5SS 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-IB-A5ST        TCGA-IB-A6UG        TCGA-LB-A7SX        TCGA-OE-A75W 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-PZ-A5RE        TCGA-Q3-A5QY        TCGA-US-A779        TCGA-US-A77E 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-US-A77J 
"SULT1B1 WILD-TYPE" 
       TCGA-F2-6879        TCGA-F2-6880        TCGA-F2-7273        TCGA-F2-7276 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-F2-A44G        TCGA-F2-A44H        TCGA-FB-A4P5        TCGA-FB-A4P6 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-FB-A545        TCGA-FB-A5VM        TCGA-FB-A78T        TCGA-FB-A7DR 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-FZ-5920        TCGA-FZ-5922        TCGA-FZ-5923        TCGA-H6-8124 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-H6-A45N        TCGA-H8-A6C1        TCGA-HZ-7289        TCGA-HZ-7918 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-HZ-7919        TCGA-HZ-7922        TCGA-HZ-7923        TCGA-HZ-7924 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-HZ-7925        TCGA-HZ-7926        TCGA-HZ-8001        TCGA-HZ-8002 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-HZ-8003        TCGA-HZ-8005        TCGA-HZ-8315        TCGA-HZ-8317 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-HZ-8636        TCGA-HZ-8638        TCGA-HZ-A49G        TCGA-HZ-A49H 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-HZ-A4BH        TCGA-HZ-A4BK        TCGA-IB-7644        TCGA-IB-7645 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-IB-7646        TCGA-IB-7647        TCGA-IB-7649        TCGA-IB-7651 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE"   "SULT1B1 MUTATED" 
       TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-7886        TCGA-IB-7887 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-IB-7888        TCGA-IB-7889        TCGA-IB-7890        TCGA-IB-7891 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE"   "SULT1B1 MUTATED" 
       TCGA-IB-7893        TCGA-IB-7897        TCGA-IB-8126        TCGA-IB-8127 
  "SULT1B1 MUTATED" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-IB-A5SO        TCGA-IB-A5SP        TCGA-IB-A5SQ        TCGA-IB-A5SS 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-IB-A5ST        TCGA-IB-A6UG        TCGA-LB-A7SX        TCGA-OE-A75W 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-PZ-A5RE        TCGA-Q3-A5QY        TCGA-US-A779        TCGA-US-A77E 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-US-A77J 
"SULT1B1 WILD-TYPE" 
       TCGA-F2-6879        TCGA-F2-6880        TCGA-F2-7273        TCGA-F2-7276 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-F2-A44G        TCGA-F2-A44H        TCGA-FB-A4P5        TCGA-FB-A4P6 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-FB-A545        TCGA-FB-A5VM        TCGA-FB-A78T        TCGA-FB-A7DR 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-FZ-5920        TCGA-FZ-5922        TCGA-FZ-5923        TCGA-H6-8124 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-H6-A45N        TCGA-H8-A6C1        TCGA-HZ-7289        TCGA-HZ-7918 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-HZ-7919        TCGA-HZ-7922        TCGA-HZ-7923        TCGA-HZ-7924 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-HZ-7925        TCGA-HZ-7926        TCGA-HZ-8001        TCGA-HZ-8002 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-HZ-8003        TCGA-HZ-8005        TCGA-HZ-8315        TCGA-HZ-8317 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-HZ-8636        TCGA-HZ-8638        TCGA-HZ-A49G        TCGA-HZ-A49H 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-HZ-A4BH        TCGA-HZ-A4BK        TCGA-IB-7644        TCGA-IB-7645 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-IB-7646        TCGA-IB-7647        TCGA-IB-7649        TCGA-IB-7651 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE"   "SULT1B1 MUTATED" 
       TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-7886        TCGA-IB-7887 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-IB-7888        TCGA-IB-7889        TCGA-IB-7890        TCGA-IB-7891 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE"   "SULT1B1 MUTATED" 
       TCGA-IB-7893        TCGA-IB-7897        TCGA-IB-8126        TCGA-IB-8127 
  "SULT1B1 MUTATED" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-IB-A5SO        TCGA-IB-A5SP        TCGA-IB-A5SQ        TCGA-IB-A5SS 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-IB-A5ST        TCGA-IB-A6UG        TCGA-LB-A7SX        TCGA-OE-A75W 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-PZ-A5RE        TCGA-Q3-A5QY        TCGA-US-A779        TCGA-US-A77E 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-US-A77J 
"SULT1B1 WILD-TYPE" 
[1] "hr=" "1"  
D261V2, continuous
                   vv
clus                STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  SULT1B1 MUTATED          0        0         1         2         0        0
  SULT1B1 WILD-TYPE        1        4        10        49         2        3
D261V3, multiclass
                   vv
clus                T1+T2 T3+T4
  SULT1B1 MUTATED       0     3
  SULT1B1 WILD-TYPE     6    63
D261V4, multiclass
       clus
vv      SULT1B1 MUTATED SULT1B1 WILD-TYPE
  T1+T2               0                 6
  T3+T4               3                63
D261V5, binary
                   cls
clus                 0  1
  SULT1B1 MUTATED    1  2
  SULT1B1 WILD-TYPE 16 52
[1] "tbl2"
                   cls
clus                [,1] [,2]
  SULT1B1 MUTATED      1    2
  SULT1B1 WILD-TYPE   16   52
   clus
vv  SULT1B1 MUTATED SULT1B1 WILD-TYPE
  0               1                16
  1               2                52
                   vv
clus                M0 M1 MX
  SULT1B1 MUTATED    3  0  0
  SULT1B1 WILD-TYPE 36  3 30
D261V6, multiclass
    clus
vv   SULT1B1 MUTATED SULT1B1 WILD-TYPE
  M0               3                36
  M1               0                 3
  MX               0                30
D261V7, binary
                   cls
clus                 0  1
  SULT1B1 MUTATED    1  2
  SULT1B1 WILD-TYPE 35 34
[1] "tbl2"
                   cls
clus                [,1] [,2]
  SULT1B1 MUTATED      1    2
  SULT1B1 WILD-TYPE   35   34
        clus
vv       SULT1B1 MUTATED SULT1B1 WILD-TYPE
  FEMALE               1                35
  MALE                 2                34
                   vv
clus                PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  SULT1B1 MUTATED                                     3
  SULT1B1 WILD-TYPE                                  62
                   vv
clus                PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  SULT1B1 MUTATED                                       0
  SULT1B1 WILD-TYPE                                     4
                   vv
clus                PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  SULT1B1 MUTATED                                                  0
  SULT1B1 WILD-TYPE                                                2
D261V8, multiclass
                                                  clus
vv                                                 SULT1B1 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                            3
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                          0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA               0
                                                  clus
vv                                                 SULT1B1 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                             62
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                            4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                 2
D261V9, continuous
[1] "Remove cluster labels:" "SULT1B1 MUTATED"       
clus
  SULT1B1 MUTATED SULT1B1 WILD-TYPE 
                2                20 
       TCGA-F2-6880        TCGA-FB-A4P5        TCGA-FB-A4P6        TCGA-FB-A5VM 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-FB-A78T        TCGA-FB-A7DR        TCGA-H6-8124        TCGA-H6-A45N 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-H8-A6C1        TCGA-IB-7644        TCGA-IB-7649        TCGA-IB-7885 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-IB-7886        TCGA-IB-7887        TCGA-IB-8126        TCGA-IB-8127 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-IB-A5SS        TCGA-IB-A6UG        TCGA-LB-A7SX        TCGA-OE-A75W 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
D261V10, continuous
[1] "Remove cluster labels:" "SULT1B1 MUTATED"       
clus
  SULT1B1 MUTATED SULT1B1 WILD-TYPE 
                2                17 
       TCGA-FB-A4P5        TCGA-FB-A4P6        TCGA-FB-A5VM        TCGA-FB-A78T 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-FB-A7DR        TCGA-H6-8124        TCGA-H8-A6C1        TCGA-IB-7644 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-IB-7649        TCGA-IB-7885        TCGA-IB-7886        TCGA-IB-8126 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-IB-8127        TCGA-IB-A5SS        TCGA-IB-A6UG        TCGA-LB-A7SX 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-OE-A75W 
"SULT1B1 WILD-TYPE" 
                   vv
clus                R0 R1 RX
  SULT1B1 MUTATED    3  0  0
  SULT1B1 WILD-TYPE 39 24  2
D261V11, multiclass
    clus
vv   SULT1B1 MUTATED SULT1B1 WILD-TYPE
  R0               3                39
  R1               0                24
  RX               0                 2
D261V12, continuous

Clustering(262) Variable = WDR88 MUTATION ANALYSIS
D262V1, survival
                 sevent
clus2              0  1
  WDR88 MUTATED    1  4
  WDR88 WILD-TYPE 39 25
  WDR88 MUTATED WDR88 WILD-TYPE 
              5              64 
  WDR88 MUTATED WDR88 WILD-TYPE 
              4              25 
$`WDR88 MUTATED`
TCGA-H6-8124 TCGA-HZ-8005 TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7651 
       12.89         3.95        11.41        49.38        19.82 

$`WDR88 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P5 TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR 
        0.13        11.93        12.66         2.47         0.03         5.46 
TCGA-FZ-5920 TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7289 
        2.01        36.20        20.81         7.66        13.02         7.89 
TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 
        0.92         0.66         0.13         0.26        12.13        11.87 
TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8315 TCGA-HZ-8317 
        0.26         0.62         0.79         0.69         0.92         0.53 
TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK 
        0.16         2.99         0.76         0.95         6.38         1.51 
TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7886 
        4.77        21.90        15.35        15.65        27.98         4.04 
TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-7893 
        3.62        43.79        15.81        19.66        16.04         3.85 
TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ 
       15.98         0.56        17.16        10.82         9.86         7.20 
TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W TCGA-PZ-A5RE 
       15.12         0.26         1.35         4.18         3.62         8.12 
TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
       13.68        16.80        14.14        18.67 

  WDR88 MUTATED WDR88 WILD-TYPE 
           3.95            0.03 
  WDR88 MUTATED WDR88 WILD-TYPE 
          49.38           43.79 
  WDR88 MUTATED WDR88 WILD-TYPE 
          12.89            7.15 
[1] "4.0 - 49.4 (12.9)" "0.0 - 43.8 (7.2)" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"WDR88 WILD-TYPE" "WDR88 WILD-TYPE" "WDR88 WILD-TYPE" "WDR88 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"WDR88 WILD-TYPE" "WDR88 WILD-TYPE" "WDR88 WILD-TYPE" "WDR88 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"WDR88 WILD-TYPE" "WDR88 WILD-TYPE" "WDR88 WILD-TYPE" "WDR88 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"WDR88 WILD-TYPE" "WDR88 WILD-TYPE" "WDR88 WILD-TYPE"   "WDR88 MUTATED" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"WDR88 WILD-TYPE" "WDR88 WILD-TYPE" "WDR88 WILD-TYPE" "WDR88 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"WDR88 WILD-TYPE" "WDR88 WILD-TYPE" "WDR88 WILD-TYPE" "WDR88 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"WDR88 WILD-TYPE" "WDR88 WILD-TYPE" "WDR88 WILD-TYPE" "WDR88 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"WDR88 WILD-TYPE"   "WDR88 MUTATED" "WDR88 WILD-TYPE" "WDR88 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"WDR88 WILD-TYPE" "WDR88 WILD-TYPE" "WDR88 WILD-TYPE" "WDR88 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"WDR88 WILD-TYPE" "WDR88 WILD-TYPE"   "WDR88 MUTATED"   "WDR88 MUTATED" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"WDR88 WILD-TYPE" "WDR88 WILD-TYPE" "WDR88 WILD-TYPE"   "WDR88 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"WDR88 WILD-TYPE" "WDR88 WILD-TYPE" "WDR88 WILD-TYPE" "WDR88 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"WDR88 WILD-TYPE" "WDR88 WILD-TYPE" "WDR88 WILD-TYPE" "WDR88 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"WDR88 WILD-TYPE" "WDR88 WILD-TYPE" "WDR88 WILD-TYPE" "WDR88 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"WDR88 WILD-TYPE" "WDR88 WILD-TYPE" "WDR88 WILD-TYPE" "WDR88 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"WDR88 WILD-TYPE" "WDR88 WILD-TYPE" "WDR88 WILD-TYPE" "WDR88 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"WDR88 WILD-TYPE" "WDR88 WILD-TYPE" "WDR88 WILD-TYPE" "WDR88 WILD-TYPE" 
     TCGA-US-A77J 
"WDR88 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"WDR88 WILD-TYPE" "WDR88 WILD-TYPE" "WDR88 WILD-TYPE" "WDR88 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"WDR88 WILD-TYPE" "WDR88 WILD-TYPE" "WDR88 WILD-TYPE" "WDR88 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"WDR88 WILD-TYPE" "WDR88 WILD-TYPE" "WDR88 WILD-TYPE" "WDR88 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"WDR88 WILD-TYPE" "WDR88 WILD-TYPE" "WDR88 WILD-TYPE"   "WDR88 MUTATED" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"WDR88 WILD-TYPE" "WDR88 WILD-TYPE" "WDR88 WILD-TYPE" "WDR88 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"WDR88 WILD-TYPE" "WDR88 WILD-TYPE" "WDR88 WILD-TYPE" "WDR88 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"WDR88 WILD-TYPE" "WDR88 WILD-TYPE" "WDR88 WILD-TYPE" "WDR88 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"WDR88 WILD-TYPE"   "WDR88 MUTATED" "WDR88 WILD-TYPE" "WDR88 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"WDR88 WILD-TYPE" "WDR88 WILD-TYPE" "WDR88 WILD-TYPE" "WDR88 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"WDR88 WILD-TYPE" "WDR88 WILD-TYPE"   "WDR88 MUTATED"   "WDR88 MUTATED" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"WDR88 WILD-TYPE" "WDR88 WILD-TYPE" "WDR88 WILD-TYPE"   "WDR88 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"WDR88 WILD-TYPE" "WDR88 WILD-TYPE" "WDR88 WILD-TYPE" "WDR88 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"WDR88 WILD-TYPE" "WDR88 WILD-TYPE" "WDR88 WILD-TYPE" "WDR88 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"WDR88 WILD-TYPE" "WDR88 WILD-TYPE" "WDR88 WILD-TYPE" "WDR88 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"WDR88 WILD-TYPE" "WDR88 WILD-TYPE" "WDR88 WILD-TYPE" "WDR88 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"WDR88 WILD-TYPE" "WDR88 WILD-TYPE" "WDR88 WILD-TYPE" "WDR88 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"WDR88 WILD-TYPE" "WDR88 WILD-TYPE" "WDR88 WILD-TYPE" "WDR88 WILD-TYPE" 
     TCGA-US-A77J 
"WDR88 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"WDR88 WILD-TYPE" "WDR88 WILD-TYPE" "WDR88 WILD-TYPE" "WDR88 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"WDR88 WILD-TYPE" "WDR88 WILD-TYPE" "WDR88 WILD-TYPE" "WDR88 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"WDR88 WILD-TYPE" "WDR88 WILD-TYPE" "WDR88 WILD-TYPE" "WDR88 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"WDR88 WILD-TYPE" "WDR88 WILD-TYPE" "WDR88 WILD-TYPE"   "WDR88 MUTATED" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"WDR88 WILD-TYPE" "WDR88 WILD-TYPE" "WDR88 WILD-TYPE" "WDR88 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"WDR88 WILD-TYPE" "WDR88 WILD-TYPE" "WDR88 WILD-TYPE" "WDR88 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"WDR88 WILD-TYPE" "WDR88 WILD-TYPE" "WDR88 WILD-TYPE" "WDR88 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"WDR88 WILD-TYPE"   "WDR88 MUTATED" "WDR88 WILD-TYPE" "WDR88 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"WDR88 WILD-TYPE" "WDR88 WILD-TYPE" "WDR88 WILD-TYPE" "WDR88 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"WDR88 WILD-TYPE" "WDR88 WILD-TYPE"   "WDR88 MUTATED"   "WDR88 MUTATED" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"WDR88 WILD-TYPE" "WDR88 WILD-TYPE" "WDR88 WILD-TYPE"   "WDR88 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"WDR88 WILD-TYPE" "WDR88 WILD-TYPE" "WDR88 WILD-TYPE" "WDR88 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"WDR88 WILD-TYPE" "WDR88 WILD-TYPE" "WDR88 WILD-TYPE" "WDR88 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"WDR88 WILD-TYPE" "WDR88 WILD-TYPE" "WDR88 WILD-TYPE" "WDR88 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"WDR88 WILD-TYPE" "WDR88 WILD-TYPE" "WDR88 WILD-TYPE" "WDR88 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"WDR88 WILD-TYPE" "WDR88 WILD-TYPE" "WDR88 WILD-TYPE" "WDR88 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"WDR88 WILD-TYPE" "WDR88 WILD-TYPE" "WDR88 WILD-TYPE" "WDR88 WILD-TYPE" 
     TCGA-US-A77J 
"WDR88 WILD-TYPE" 
[1] "hr=" "1.6"
D262V2, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  WDR88 MUTATED          0        0         0         4         0        1
  WDR88 WILD-TYPE        1        4        11        47         2        2
D262V3, multiclass
                 vv
clus              T1+T2 T3+T4
  WDR88 MUTATED       0     5
  WDR88 WILD-TYPE     6    61
D262V4, multiclass
       clus
vv      WDR88 MUTATED WDR88 WILD-TYPE
  T1+T2             0               6
  T3+T4             5              61
D262V5, binary
                 cls
clus               0  1
  WDR88 MUTATED    0  5
  WDR88 WILD-TYPE 17 49
[1] "tbl2"
                 cls
clus              [,1] [,2]
  WDR88 MUTATED      0    5
  WDR88 WILD-TYPE   17   49
   clus
vv  WDR88 MUTATED WDR88 WILD-TYPE
  0             0              17
  1             5              49
                 vv
clus              M0 M1 MX
  WDR88 MUTATED    3  1  1
  WDR88 WILD-TYPE 36  2 29
D262V6, multiclass
    clus
vv   WDR88 MUTATED WDR88 WILD-TYPE
  M0             3              36
  M1             1               2
  MX             1              29
D262V7, binary
                 cls
clus               0  1
  WDR88 MUTATED    4  1
  WDR88 WILD-TYPE 32 35
[1] "tbl2"
                 cls
clus              [,1] [,2]
  WDR88 MUTATED      4    1
  WDR88 WILD-TYPE   32   35
        clus
vv       WDR88 MUTATED WDR88 WILD-TYPE
  FEMALE             4              32
  MALE               1              35
                 vv
clus              PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  WDR88 MUTATED                                     5
  WDR88 WILD-TYPE                                  60
                 vv
clus              PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  WDR88 MUTATED                                       0
  WDR88 WILD-TYPE                                     4
                 vv
clus              PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  WDR88 MUTATED                                                  0
  WDR88 WILD-TYPE                                                2
D262V8, multiclass
                                                  clus
vv                                                 WDR88 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                          5
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                        0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA             0
                                                  clus
vv                                                 WDR88 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                           60
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                          4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA               2
D262V9, continuous
D262V10, continuous
                 vv
clus              R0 R1 RX
  WDR88 MUTATED    3  2  0
  WDR88 WILD-TYPE 39 22  2
D262V11, multiclass
    clus
vv   WDR88 MUTATED WDR88 WILD-TYPE
  R0             3              39
  R1             2              22
  RX             0               2
D262V12, continuous

Clustering(263) Variable = PSME4 MUTATION ANALYSIS
D263V1, survival
                 sevent
clus2              0  1
  PSME4 MUTATED    2  4
  PSME4 WILD-TYPE 38 25
  PSME4 MUTATED PSME4 WILD-TYPE 
              6              63 
  PSME4 MUTATED PSME4 WILD-TYPE 
              4              25 
$`PSME4 MUTATED`
TCGA-HZ-8005 TCGA-HZ-8317 TCGA-HZ-A4BH TCGA-IB-7651 TCGA-IB-7886 TCGA-IB-7897 
        3.95         0.53         6.38        19.82         4.04        15.98 

$`PSME4 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P5 TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR 
        0.13        11.93        12.66         2.47         0.03         5.46 
TCGA-FZ-5920 TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 
        2.01        36.20        20.81        12.89         7.66        13.02 
TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 
        7.89         0.92         0.66         0.13         0.26        12.13 
TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8315 
       11.87         0.26         0.62         0.79         0.69         0.92 
TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BK TCGA-IB-7644 
        0.16         2.99         0.76         0.95         1.51        11.41 
TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7652 TCGA-IB-7885 
       49.38         4.77        21.90        15.35        15.65        27.98 
TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-7893 
        3.62        43.79        15.81        19.66        16.04         3.85 
TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS 
        0.56        17.16        10.82         9.86         7.20        15.12 
TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W TCGA-PZ-A5RE TCGA-Q3-A5QY 
        0.26         1.35         4.18         3.62         8.12        13.68 
TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
       16.80        14.14        18.67 

  PSME4 MUTATED PSME4 WILD-TYPE 
           0.53            0.03 
  PSME4 MUTATED PSME4 WILD-TYPE 
          19.82           49.38 
  PSME4 MUTATED PSME4 WILD-TYPE 
           5.21            7.89 
[1] "0.5 - 19.8 (5.2)" "0.0 - 49.4 (7.9)"
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"PSME4 WILD-TYPE" "PSME4 WILD-TYPE" "PSME4 WILD-TYPE" "PSME4 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"PSME4 WILD-TYPE" "PSME4 WILD-TYPE" "PSME4 WILD-TYPE" "PSME4 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"PSME4 WILD-TYPE" "PSME4 WILD-TYPE" "PSME4 WILD-TYPE" "PSME4 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"PSME4 WILD-TYPE" "PSME4 WILD-TYPE" "PSME4 WILD-TYPE" "PSME4 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"PSME4 WILD-TYPE" "PSME4 WILD-TYPE" "PSME4 WILD-TYPE" "PSME4 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"PSME4 WILD-TYPE" "PSME4 WILD-TYPE" "PSME4 WILD-TYPE" "PSME4 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"PSME4 WILD-TYPE" "PSME4 WILD-TYPE" "PSME4 WILD-TYPE" "PSME4 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"PSME4 WILD-TYPE"   "PSME4 MUTATED" "PSME4 WILD-TYPE"   "PSME4 MUTATED" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"PSME4 WILD-TYPE" "PSME4 WILD-TYPE" "PSME4 WILD-TYPE" "PSME4 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
  "PSME4 MUTATED" "PSME4 WILD-TYPE" "PSME4 WILD-TYPE" "PSME4 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"PSME4 WILD-TYPE" "PSME4 WILD-TYPE" "PSME4 WILD-TYPE"   "PSME4 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"PSME4 WILD-TYPE" "PSME4 WILD-TYPE"   "PSME4 MUTATED" "PSME4 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"PSME4 WILD-TYPE" "PSME4 WILD-TYPE" "PSME4 WILD-TYPE" "PSME4 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"PSME4 WILD-TYPE"   "PSME4 MUTATED" "PSME4 WILD-TYPE" "PSME4 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"PSME4 WILD-TYPE" "PSME4 WILD-TYPE" "PSME4 WILD-TYPE" "PSME4 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"PSME4 WILD-TYPE" "PSME4 WILD-TYPE" "PSME4 WILD-TYPE" "PSME4 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"PSME4 WILD-TYPE" "PSME4 WILD-TYPE" "PSME4 WILD-TYPE" "PSME4 WILD-TYPE" 
     TCGA-US-A77J 
"PSME4 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"PSME4 WILD-TYPE" "PSME4 WILD-TYPE" "PSME4 WILD-TYPE" "PSME4 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"PSME4 WILD-TYPE" "PSME4 WILD-TYPE" "PSME4 WILD-TYPE" "PSME4 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"PSME4 WILD-TYPE" "PSME4 WILD-TYPE" "PSME4 WILD-TYPE" "PSME4 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"PSME4 WILD-TYPE" "PSME4 WILD-TYPE" "PSME4 WILD-TYPE" "PSME4 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"PSME4 WILD-TYPE" "PSME4 WILD-TYPE" "PSME4 WILD-TYPE" "PSME4 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"PSME4 WILD-TYPE" "PSME4 WILD-TYPE" "PSME4 WILD-TYPE" "PSME4 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"PSME4 WILD-TYPE" "PSME4 WILD-TYPE" "PSME4 WILD-TYPE" "PSME4 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"PSME4 WILD-TYPE"   "PSME4 MUTATED" "PSME4 WILD-TYPE"   "PSME4 MUTATED" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"PSME4 WILD-TYPE" "PSME4 WILD-TYPE" "PSME4 WILD-TYPE" "PSME4 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
  "PSME4 MUTATED" "PSME4 WILD-TYPE" "PSME4 WILD-TYPE" "PSME4 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"PSME4 WILD-TYPE" "PSME4 WILD-TYPE" "PSME4 WILD-TYPE"   "PSME4 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"PSME4 WILD-TYPE" "PSME4 WILD-TYPE"   "PSME4 MUTATED" "PSME4 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"PSME4 WILD-TYPE" "PSME4 WILD-TYPE" "PSME4 WILD-TYPE" "PSME4 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"PSME4 WILD-TYPE"   "PSME4 MUTATED" "PSME4 WILD-TYPE" "PSME4 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"PSME4 WILD-TYPE" "PSME4 WILD-TYPE" "PSME4 WILD-TYPE" "PSME4 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"PSME4 WILD-TYPE" "PSME4 WILD-TYPE" "PSME4 WILD-TYPE" "PSME4 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"PSME4 WILD-TYPE" "PSME4 WILD-TYPE" "PSME4 WILD-TYPE" "PSME4 WILD-TYPE" 
     TCGA-US-A77J 
"PSME4 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"PSME4 WILD-TYPE" "PSME4 WILD-TYPE" "PSME4 WILD-TYPE" "PSME4 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"PSME4 WILD-TYPE" "PSME4 WILD-TYPE" "PSME4 WILD-TYPE" "PSME4 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"PSME4 WILD-TYPE" "PSME4 WILD-TYPE" "PSME4 WILD-TYPE" "PSME4 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"PSME4 WILD-TYPE" "PSME4 WILD-TYPE" "PSME4 WILD-TYPE" "PSME4 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"PSME4 WILD-TYPE" "PSME4 WILD-TYPE" "PSME4 WILD-TYPE" "PSME4 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"PSME4 WILD-TYPE" "PSME4 WILD-TYPE" "PSME4 WILD-TYPE" "PSME4 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"PSME4 WILD-TYPE" "PSME4 WILD-TYPE" "PSME4 WILD-TYPE" "PSME4 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"PSME4 WILD-TYPE"   "PSME4 MUTATED" "PSME4 WILD-TYPE"   "PSME4 MUTATED" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"PSME4 WILD-TYPE" "PSME4 WILD-TYPE" "PSME4 WILD-TYPE" "PSME4 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
  "PSME4 MUTATED" "PSME4 WILD-TYPE" "PSME4 WILD-TYPE" "PSME4 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"PSME4 WILD-TYPE" "PSME4 WILD-TYPE" "PSME4 WILD-TYPE"   "PSME4 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"PSME4 WILD-TYPE" "PSME4 WILD-TYPE"   "PSME4 MUTATED" "PSME4 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"PSME4 WILD-TYPE" "PSME4 WILD-TYPE" "PSME4 WILD-TYPE" "PSME4 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"PSME4 WILD-TYPE"   "PSME4 MUTATED" "PSME4 WILD-TYPE" "PSME4 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"PSME4 WILD-TYPE" "PSME4 WILD-TYPE" "PSME4 WILD-TYPE" "PSME4 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"PSME4 WILD-TYPE" "PSME4 WILD-TYPE" "PSME4 WILD-TYPE" "PSME4 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"PSME4 WILD-TYPE" "PSME4 WILD-TYPE" "PSME4 WILD-TYPE" "PSME4 WILD-TYPE" 
     TCGA-US-A77J 
"PSME4 WILD-TYPE" 
[1] "hr=" "1.9"
D263V2, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  PSME4 MUTATED          0        0         0         6         0        0
  PSME4 WILD-TYPE        1        4        11        45         2        3
D263V3, multiclass
                 vv
clus              T1+T2 T3+T4
  PSME4 MUTATED       0     6
  PSME4 WILD-TYPE     6    60
D263V4, multiclass
       clus
vv      PSME4 MUTATED PSME4 WILD-TYPE
  T1+T2             0               6
  T3+T4             6              60
D263V5, binary
                 cls
clus               0  1
  PSME4 MUTATED    0  6
  PSME4 WILD-TYPE 17 48
[1] "tbl2"
                 cls
clus              [,1] [,2]
  PSME4 MUTATED      0    6
  PSME4 WILD-TYPE   17   48
   clus
vv  PSME4 MUTATED PSME4 WILD-TYPE
  0             0              17
  1             6              48
                 vv
clus              M0 M1 MX
  PSME4 MUTATED    3  0  3
  PSME4 WILD-TYPE 36  3 27
D263V6, multiclass
    clus
vv   PSME4 MUTATED PSME4 WILD-TYPE
  M0             3              36
  M1             0               3
  MX             3              27
D263V7, binary
                 cls
clus               0  1
  PSME4 MUTATED    3  3
  PSME4 WILD-TYPE 33 33
[1] "tbl2"
                 cls
clus              [,1] [,2]
  PSME4 MUTATED      3    3
  PSME4 WILD-TYPE   33   33
        clus
vv       PSME4 MUTATED PSME4 WILD-TYPE
  FEMALE             3              33
  MALE               3              33
                 vv
clus              PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  PSME4 MUTATED                                     6
  PSME4 WILD-TYPE                                  59
                 vv
clus              PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  PSME4 MUTATED                                       0
  PSME4 WILD-TYPE                                     4
                 vv
clus              PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  PSME4 MUTATED                                                  0
  PSME4 WILD-TYPE                                                2
D263V8, multiclass
                                                  clus
vv                                                 PSME4 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                          6
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                        0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA             0
                                                  clus
vv                                                 PSME4 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                           59
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                          4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA               2
D263V9, continuous
[1] "Remove cluster labels:" "PSME4 MUTATED"         
clus
  PSME4 MUTATED PSME4 WILD-TYPE 
              2              20 
     TCGA-F2-6880      TCGA-FB-A4P5      TCGA-FB-A4P6      TCGA-FB-A5VM 
"PSME4 WILD-TYPE" "PSME4 WILD-TYPE" "PSME4 WILD-TYPE" "PSME4 WILD-TYPE" 
     TCGA-FB-A78T      TCGA-FB-A7DR      TCGA-H6-8124      TCGA-H6-A45N 
"PSME4 WILD-TYPE" "PSME4 WILD-TYPE" "PSME4 WILD-TYPE" "PSME4 WILD-TYPE" 
     TCGA-H8-A6C1      TCGA-IB-7644      TCGA-IB-7649      TCGA-IB-7885 
"PSME4 WILD-TYPE" "PSME4 WILD-TYPE" "PSME4 WILD-TYPE" "PSME4 WILD-TYPE" 
     TCGA-IB-7887      TCGA-IB-7891      TCGA-IB-8126      TCGA-IB-8127 
"PSME4 WILD-TYPE" "PSME4 WILD-TYPE" "PSME4 WILD-TYPE" "PSME4 WILD-TYPE" 
     TCGA-IB-A5SS      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"PSME4 WILD-TYPE" "PSME4 WILD-TYPE" "PSME4 WILD-TYPE" "PSME4 WILD-TYPE" 
D263V10, continuous
[1] "Remove cluster labels:" "PSME4 MUTATED"         
clus
  PSME4 MUTATED PSME4 WILD-TYPE 
              2              17 
     TCGA-FB-A4P5      TCGA-FB-A4P6      TCGA-FB-A5VM      TCGA-FB-A78T 
"PSME4 WILD-TYPE" "PSME4 WILD-TYPE" "PSME4 WILD-TYPE" "PSME4 WILD-TYPE" 
     TCGA-FB-A7DR      TCGA-H6-8124      TCGA-H8-A6C1      TCGA-IB-7644 
"PSME4 WILD-TYPE" "PSME4 WILD-TYPE" "PSME4 WILD-TYPE" "PSME4 WILD-TYPE" 
     TCGA-IB-7649      TCGA-IB-7885      TCGA-IB-7891      TCGA-IB-8126 
"PSME4 WILD-TYPE" "PSME4 WILD-TYPE" "PSME4 WILD-TYPE" "PSME4 WILD-TYPE" 
     TCGA-IB-8127      TCGA-IB-A5SS      TCGA-IB-A6UG      TCGA-LB-A7SX 
"PSME4 WILD-TYPE" "PSME4 WILD-TYPE" "PSME4 WILD-TYPE" "PSME4 WILD-TYPE" 
     TCGA-OE-A75W 
"PSME4 WILD-TYPE" 
                 vv
clus              R0 R1 RX
  PSME4 MUTATED    2  4  0
  PSME4 WILD-TYPE 40 20  2
D263V11, multiclass
    clus
vv   PSME4 MUTATED PSME4 WILD-TYPE
  R0             2              40
  R1             4              20
  RX             0               2
D263V12, continuous

Clustering(264) Variable = TMC7 MUTATION ANALYSIS
D264V1, survival
                sevent
clus2             0  1
  TMC7 MUTATED    1  2
  TMC7 WILD-TYPE 39 27
  TMC7 MUTATED TMC7 WILD-TYPE 
             3             66 
  TMC7 MUTATED TMC7 WILD-TYPE 
             2             27 
$`TMC7 MUTATED`
TCGA-H8-A6C1 TCGA-IB-7651 TCGA-IB-7888 
       13.02        19.82        43.79 

$`TMC7 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P5 TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR 
        0.13        11.93        12.66         2.47         0.03         5.46 
TCGA-FZ-5920 TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-HZ-7289 
        2.01        36.20        20.81        12.89         7.66         7.89 
TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 
        0.92         0.66         0.13         0.26        12.13        11.87 
TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 
        0.26         0.62         0.79         0.69         3.95         0.92 
TCGA-HZ-8317 TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH 
        0.53         0.16         2.99         0.76         0.95         6.38 
TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 
        1.51        11.41        49.38         4.77        21.90        15.35 
TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7889 TCGA-IB-7890 
       15.65        27.98         4.04         3.62        15.81        19.66 
TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO 
       16.04         3.85        15.98         0.56        17.16        10.82 
TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX 
        9.86         7.20        15.12         0.26         1.35         4.18 
TCGA-OE-A75W TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
        3.62         8.12        13.68        16.80        14.14        18.67 

  TMC7 MUTATED TMC7 WILD-TYPE 
         13.02           0.03 
  TMC7 MUTATED TMC7 WILD-TYPE 
         43.79          49.38 
  TMC7 MUTATED TMC7 WILD-TYPE 
         19.82           7.15 
[1] "13.0 - 43.8 (19.8)" "0.0 - 49.4 (7.2)"  
    TCGA-F2-6879     TCGA-F2-6880     TCGA-F2-7273     TCGA-F2-7276 
"TMC7 WILD-TYPE" "TMC7 WILD-TYPE" "TMC7 WILD-TYPE" "TMC7 WILD-TYPE" 
    TCGA-F2-A44G     TCGA-F2-A44H     TCGA-FB-A4P5     TCGA-FB-A4P6 
"TMC7 WILD-TYPE" "TMC7 WILD-TYPE" "TMC7 WILD-TYPE" "TMC7 WILD-TYPE" 
    TCGA-FB-A545     TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-FB-A7DR 
"TMC7 WILD-TYPE" "TMC7 WILD-TYPE" "TMC7 WILD-TYPE" "TMC7 WILD-TYPE" 
    TCGA-FZ-5920     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-H6-8124 
"TMC7 WILD-TYPE" "TMC7 WILD-TYPE" "TMC7 WILD-TYPE" "TMC7 WILD-TYPE" 
    TCGA-H6-A45N     TCGA-H8-A6C1     TCGA-HZ-7289     TCGA-HZ-7918 
"TMC7 WILD-TYPE"   "TMC7 MUTATED" "TMC7 WILD-TYPE" "TMC7 WILD-TYPE" 
    TCGA-HZ-7919     TCGA-HZ-7922     TCGA-HZ-7923     TCGA-HZ-7924 
"TMC7 WILD-TYPE" "TMC7 WILD-TYPE" "TMC7 WILD-TYPE" "TMC7 WILD-TYPE" 
    TCGA-HZ-7925     TCGA-HZ-7926     TCGA-HZ-8001     TCGA-HZ-8002 
"TMC7 WILD-TYPE" "TMC7 WILD-TYPE" "TMC7 WILD-TYPE" "TMC7 WILD-TYPE" 
    TCGA-HZ-8003     TCGA-HZ-8005     TCGA-HZ-8315     TCGA-HZ-8317 
"TMC7 WILD-TYPE" "TMC7 WILD-TYPE" "TMC7 WILD-TYPE" "TMC7 WILD-TYPE" 
    TCGA-HZ-8636     TCGA-HZ-8638     TCGA-HZ-A49G     TCGA-HZ-A49H 
"TMC7 WILD-TYPE" "TMC7 WILD-TYPE" "TMC7 WILD-TYPE" "TMC7 WILD-TYPE" 
    TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-IB-7644     TCGA-IB-7645 
"TMC7 WILD-TYPE" "TMC7 WILD-TYPE" "TMC7 WILD-TYPE" "TMC7 WILD-TYPE" 
    TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7651 
"TMC7 WILD-TYPE" "TMC7 WILD-TYPE" "TMC7 WILD-TYPE"   "TMC7 MUTATED" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887 
"TMC7 WILD-TYPE" "TMC7 WILD-TYPE" "TMC7 WILD-TYPE" "TMC7 WILD-TYPE" 
    TCGA-IB-7888     TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891 
  "TMC7 MUTATED" "TMC7 WILD-TYPE" "TMC7 WILD-TYPE" "TMC7 WILD-TYPE" 
    TCGA-IB-7893     TCGA-IB-7897     TCGA-IB-8126     TCGA-IB-8127 
"TMC7 WILD-TYPE" "TMC7 WILD-TYPE" "TMC7 WILD-TYPE" "TMC7 WILD-TYPE" 
    TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS 
"TMC7 WILD-TYPE" "TMC7 WILD-TYPE" "TMC7 WILD-TYPE" "TMC7 WILD-TYPE" 
    TCGA-IB-A5ST     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
"TMC7 WILD-TYPE" "TMC7 WILD-TYPE" "TMC7 WILD-TYPE" "TMC7 WILD-TYPE" 
    TCGA-PZ-A5RE     TCGA-Q3-A5QY     TCGA-US-A779     TCGA-US-A77E 
"TMC7 WILD-TYPE" "TMC7 WILD-TYPE" "TMC7 WILD-TYPE" "TMC7 WILD-TYPE" 
    TCGA-US-A77J 
"TMC7 WILD-TYPE" 
    TCGA-F2-6879     TCGA-F2-6880     TCGA-F2-7273     TCGA-F2-7276 
"TMC7 WILD-TYPE" "TMC7 WILD-TYPE" "TMC7 WILD-TYPE" "TMC7 WILD-TYPE" 
    TCGA-F2-A44G     TCGA-F2-A44H     TCGA-FB-A4P5     TCGA-FB-A4P6 
"TMC7 WILD-TYPE" "TMC7 WILD-TYPE" "TMC7 WILD-TYPE" "TMC7 WILD-TYPE" 
    TCGA-FB-A545     TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-FB-A7DR 
"TMC7 WILD-TYPE" "TMC7 WILD-TYPE" "TMC7 WILD-TYPE" "TMC7 WILD-TYPE" 
    TCGA-FZ-5920     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-H6-8124 
"TMC7 WILD-TYPE" "TMC7 WILD-TYPE" "TMC7 WILD-TYPE" "TMC7 WILD-TYPE" 
    TCGA-H6-A45N     TCGA-H8-A6C1     TCGA-HZ-7289     TCGA-HZ-7918 
"TMC7 WILD-TYPE"   "TMC7 MUTATED" "TMC7 WILD-TYPE" "TMC7 WILD-TYPE" 
    TCGA-HZ-7919     TCGA-HZ-7922     TCGA-HZ-7923     TCGA-HZ-7924 
"TMC7 WILD-TYPE" "TMC7 WILD-TYPE" "TMC7 WILD-TYPE" "TMC7 WILD-TYPE" 
    TCGA-HZ-7925     TCGA-HZ-7926     TCGA-HZ-8001     TCGA-HZ-8002 
"TMC7 WILD-TYPE" "TMC7 WILD-TYPE" "TMC7 WILD-TYPE" "TMC7 WILD-TYPE" 
    TCGA-HZ-8003     TCGA-HZ-8005     TCGA-HZ-8315     TCGA-HZ-8317 
"TMC7 WILD-TYPE" "TMC7 WILD-TYPE" "TMC7 WILD-TYPE" "TMC7 WILD-TYPE" 
    TCGA-HZ-8636     TCGA-HZ-8638     TCGA-HZ-A49G     TCGA-HZ-A49H 
"TMC7 WILD-TYPE" "TMC7 WILD-TYPE" "TMC7 WILD-TYPE" "TMC7 WILD-TYPE" 
    TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-IB-7644     TCGA-IB-7645 
"TMC7 WILD-TYPE" "TMC7 WILD-TYPE" "TMC7 WILD-TYPE" "TMC7 WILD-TYPE" 
    TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7651 
"TMC7 WILD-TYPE" "TMC7 WILD-TYPE" "TMC7 WILD-TYPE"   "TMC7 MUTATED" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887 
"TMC7 WILD-TYPE" "TMC7 WILD-TYPE" "TMC7 WILD-TYPE" "TMC7 WILD-TYPE" 
    TCGA-IB-7888     TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891 
  "TMC7 MUTATED" "TMC7 WILD-TYPE" "TMC7 WILD-TYPE" "TMC7 WILD-TYPE" 
    TCGA-IB-7893     TCGA-IB-7897     TCGA-IB-8126     TCGA-IB-8127 
"TMC7 WILD-TYPE" "TMC7 WILD-TYPE" "TMC7 WILD-TYPE" "TMC7 WILD-TYPE" 
    TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS 
"TMC7 WILD-TYPE" "TMC7 WILD-TYPE" "TMC7 WILD-TYPE" "TMC7 WILD-TYPE" 
    TCGA-IB-A5ST     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
"TMC7 WILD-TYPE" "TMC7 WILD-TYPE" "TMC7 WILD-TYPE" "TMC7 WILD-TYPE" 
    TCGA-PZ-A5RE     TCGA-Q3-A5QY     TCGA-US-A779     TCGA-US-A77E 
"TMC7 WILD-TYPE" "TMC7 WILD-TYPE" "TMC7 WILD-TYPE" "TMC7 WILD-TYPE" 
    TCGA-US-A77J 
"TMC7 WILD-TYPE" 
    TCGA-F2-6879     TCGA-F2-6880     TCGA-F2-7273     TCGA-F2-7276 
"TMC7 WILD-TYPE" "TMC7 WILD-TYPE" "TMC7 WILD-TYPE" "TMC7 WILD-TYPE" 
    TCGA-F2-A44G     TCGA-F2-A44H     TCGA-FB-A4P5     TCGA-FB-A4P6 
"TMC7 WILD-TYPE" "TMC7 WILD-TYPE" "TMC7 WILD-TYPE" "TMC7 WILD-TYPE" 
    TCGA-FB-A545     TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-FB-A7DR 
"TMC7 WILD-TYPE" "TMC7 WILD-TYPE" "TMC7 WILD-TYPE" "TMC7 WILD-TYPE" 
    TCGA-FZ-5920     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-H6-8124 
"TMC7 WILD-TYPE" "TMC7 WILD-TYPE" "TMC7 WILD-TYPE" "TMC7 WILD-TYPE" 
    TCGA-H6-A45N     TCGA-H8-A6C1     TCGA-HZ-7289     TCGA-HZ-7918 
"TMC7 WILD-TYPE"   "TMC7 MUTATED" "TMC7 WILD-TYPE" "TMC7 WILD-TYPE" 
    TCGA-HZ-7919     TCGA-HZ-7922     TCGA-HZ-7923     TCGA-HZ-7924 
"TMC7 WILD-TYPE" "TMC7 WILD-TYPE" "TMC7 WILD-TYPE" "TMC7 WILD-TYPE" 
    TCGA-HZ-7925     TCGA-HZ-7926     TCGA-HZ-8001     TCGA-HZ-8002 
"TMC7 WILD-TYPE" "TMC7 WILD-TYPE" "TMC7 WILD-TYPE" "TMC7 WILD-TYPE" 
    TCGA-HZ-8003     TCGA-HZ-8005     TCGA-HZ-8315     TCGA-HZ-8317 
"TMC7 WILD-TYPE" "TMC7 WILD-TYPE" "TMC7 WILD-TYPE" "TMC7 WILD-TYPE" 
    TCGA-HZ-8636     TCGA-HZ-8638     TCGA-HZ-A49G     TCGA-HZ-A49H 
"TMC7 WILD-TYPE" "TMC7 WILD-TYPE" "TMC7 WILD-TYPE" "TMC7 WILD-TYPE" 
    TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-IB-7644     TCGA-IB-7645 
"TMC7 WILD-TYPE" "TMC7 WILD-TYPE" "TMC7 WILD-TYPE" "TMC7 WILD-TYPE" 
    TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7651 
"TMC7 WILD-TYPE" "TMC7 WILD-TYPE" "TMC7 WILD-TYPE"   "TMC7 MUTATED" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887 
"TMC7 WILD-TYPE" "TMC7 WILD-TYPE" "TMC7 WILD-TYPE" "TMC7 WILD-TYPE" 
    TCGA-IB-7888     TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891 
  "TMC7 MUTATED" "TMC7 WILD-TYPE" "TMC7 WILD-TYPE" "TMC7 WILD-TYPE" 
    TCGA-IB-7893     TCGA-IB-7897     TCGA-IB-8126     TCGA-IB-8127 
"TMC7 WILD-TYPE" "TMC7 WILD-TYPE" "TMC7 WILD-TYPE" "TMC7 WILD-TYPE" 
    TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS 
"TMC7 WILD-TYPE" "TMC7 WILD-TYPE" "TMC7 WILD-TYPE" "TMC7 WILD-TYPE" 
    TCGA-IB-A5ST     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
"TMC7 WILD-TYPE" "TMC7 WILD-TYPE" "TMC7 WILD-TYPE" "TMC7 WILD-TYPE" 
    TCGA-PZ-A5RE     TCGA-Q3-A5QY     TCGA-US-A779     TCGA-US-A77E 
"TMC7 WILD-TYPE" "TMC7 WILD-TYPE" "TMC7 WILD-TYPE" "TMC7 WILD-TYPE" 
    TCGA-US-A77J 
"TMC7 WILD-TYPE" 
[1] "hr=" "2.2"
D264V2, continuous
                vv
clus             STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  TMC7 MUTATED          0        0         2         1         0        0
  TMC7 WILD-TYPE        1        4         9        50         2        3
D264V3, multiclass
                vv
clus             T1+T2 T3+T4
  TMC7 MUTATED       0     3
  TMC7 WILD-TYPE     6    63
D264V4, multiclass
       clus
vv      TMC7 MUTATED TMC7 WILD-TYPE
  T1+T2            0              6
  T3+T4            3             63
D264V5, binary
                cls
clus              0  1
  TMC7 MUTATED    2  1
  TMC7 WILD-TYPE 15 53
[1] "tbl2"
                cls
clus             [,1] [,2]
  TMC7 MUTATED      2    1
  TMC7 WILD-TYPE   15   53
   clus
vv  TMC7 MUTATED TMC7 WILD-TYPE
  0            2             15
  1            1             53
                vv
clus             M0 M1 MX
  TMC7 MUTATED    2  0  1
  TMC7 WILD-TYPE 37  3 29
D264V6, multiclass
    clus
vv   TMC7 MUTATED TMC7 WILD-TYPE
  M0            2             37
  M1            0              3
  MX            1             29
D264V7, binary
                cls
clus              0  1
  TMC7 MUTATED    2  1
  TMC7 WILD-TYPE 34 35
[1] "tbl2"
                cls
clus             [,1] [,2]
  TMC7 MUTATED      2    1
  TMC7 WILD-TYPE   34   35
        clus
vv       TMC7 MUTATED TMC7 WILD-TYPE
  FEMALE            2             34
  MALE              1             35
                vv
clus             PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  TMC7 MUTATED                                     2
  TMC7 WILD-TYPE                                  63
                vv
clus             PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  TMC7 MUTATED                                       1
  TMC7 WILD-TYPE                                     3
                vv
clus             PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  TMC7 MUTATED                                                  0
  TMC7 WILD-TYPE                                                2
D264V8, multiclass
                                                  clus
vv                                                 TMC7 MUTATED TMC7 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                         2             63
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                       1              3
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA            0              2
D264V9, continuous
[1] "Remove cluster labels:" "TMC7 MUTATED"          
clus
  TMC7 MUTATED TMC7 WILD-TYPE 
             2             20 
    TCGA-F2-6880     TCGA-FB-A4P5     TCGA-FB-A4P6     TCGA-FB-A5VM 
"TMC7 WILD-TYPE" "TMC7 WILD-TYPE" "TMC7 WILD-TYPE" "TMC7 WILD-TYPE" 
    TCGA-FB-A78T     TCGA-FB-A7DR     TCGA-H6-8124     TCGA-H6-A45N 
"TMC7 WILD-TYPE" "TMC7 WILD-TYPE" "TMC7 WILD-TYPE" "TMC7 WILD-TYPE" 
    TCGA-IB-7644     TCGA-IB-7649     TCGA-IB-7885     TCGA-IB-7886 
"TMC7 WILD-TYPE" "TMC7 WILD-TYPE" "TMC7 WILD-TYPE" "TMC7 WILD-TYPE" 
    TCGA-IB-7887     TCGA-IB-7891     TCGA-IB-8126     TCGA-IB-8127 
"TMC7 WILD-TYPE" "TMC7 WILD-TYPE" "TMC7 WILD-TYPE" "TMC7 WILD-TYPE" 
    TCGA-IB-A5SS     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
"TMC7 WILD-TYPE" "TMC7 WILD-TYPE" "TMC7 WILD-TYPE" "TMC7 WILD-TYPE" 
D264V10, continuous
[1] "Remove cluster labels:" "TMC7 MUTATED"          
clus
  TMC7 MUTATED TMC7 WILD-TYPE 
             2             17 
    TCGA-FB-A4P5     TCGA-FB-A4P6     TCGA-FB-A5VM     TCGA-FB-A78T 
"TMC7 WILD-TYPE" "TMC7 WILD-TYPE" "TMC7 WILD-TYPE" "TMC7 WILD-TYPE" 
    TCGA-FB-A7DR     TCGA-H6-8124     TCGA-IB-7644     TCGA-IB-7649 
"TMC7 WILD-TYPE" "TMC7 WILD-TYPE" "TMC7 WILD-TYPE" "TMC7 WILD-TYPE" 
    TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7891     TCGA-IB-8126 
"TMC7 WILD-TYPE" "TMC7 WILD-TYPE" "TMC7 WILD-TYPE" "TMC7 WILD-TYPE" 
    TCGA-IB-8127     TCGA-IB-A5SS     TCGA-IB-A6UG     TCGA-LB-A7SX 
"TMC7 WILD-TYPE" "TMC7 WILD-TYPE" "TMC7 WILD-TYPE" "TMC7 WILD-TYPE" 
    TCGA-OE-A75W 
"TMC7 WILD-TYPE" 
                vv
clus             R0 R1 RX
  TMC7 MUTATED    3  0  0
  TMC7 WILD-TYPE 39 24  2
D264V11, multiclass
    clus
vv   TMC7 MUTATED TMC7 WILD-TYPE
  R0            3             39
  R1            0             24
  RX            0              2
D264V12, continuous

Clustering(265) Variable = FTH1 MUTATION ANALYSIS
D265V1, survival
                sevent
clus2             0  1
  FTH1 MUTATED    2  1
  FTH1 WILD-TYPE 38 28
  FTH1 MUTATED FTH1 WILD-TYPE 
             3             66 
  FTH1 MUTATED FTH1 WILD-TYPE 
             1             28 
$`FTH1 MUTATED`
TCGA-FB-A545 TCGA-HZ-7922 TCGA-US-A77J 
       12.66         0.13        18.67 

$`FTH1 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P5 TCGA-FB-A4P6 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR TCGA-FZ-5920 
        0.13        11.93         2.47         0.03         5.46         2.01 
TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7289 
       36.20        20.81        12.89         7.66        13.02         7.89 
TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 
        0.92         0.66         0.26        12.13        11.87         0.26 
TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 
        0.62         0.79         0.69         3.95         0.92         0.53 
TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK 
        0.16         2.99         0.76         0.95         6.38         1.51 
TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7651 
       11.41        49.38         4.77        21.90        15.35        19.82 
TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 
       15.65        27.98         4.04         3.62        43.79        15.81 
TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-8127 
       19.66        16.04         3.85        15.98         0.56        17.16 
TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG 
       10.82         9.86         7.20        15.12         0.26         1.35 
TCGA-LB-A7SX TCGA-OE-A75W TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E 
        4.18         3.62         8.12        13.68        16.80        14.14 

  FTH1 MUTATED FTH1 WILD-TYPE 
          0.13           0.03 
  FTH1 MUTATED FTH1 WILD-TYPE 
         18.67          49.38 
  FTH1 MUTATED FTH1 WILD-TYPE 
         12.66           7.43 
[1] "0.1 - 18.7 (12.7)" "0.0 - 49.4 (7.4)" 
    TCGA-F2-6879     TCGA-F2-6880     TCGA-F2-7273     TCGA-F2-7276 
"FTH1 WILD-TYPE" "FTH1 WILD-TYPE" "FTH1 WILD-TYPE" "FTH1 WILD-TYPE" 
    TCGA-F2-A44G     TCGA-F2-A44H     TCGA-FB-A4P5     TCGA-FB-A4P6 
"FTH1 WILD-TYPE" "FTH1 WILD-TYPE" "FTH1 WILD-TYPE" "FTH1 WILD-TYPE" 
    TCGA-FB-A545     TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-FB-A7DR 
  "FTH1 MUTATED" "FTH1 WILD-TYPE" "FTH1 WILD-TYPE" "FTH1 WILD-TYPE" 
    TCGA-FZ-5920     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-H6-8124 
"FTH1 WILD-TYPE" "FTH1 WILD-TYPE" "FTH1 WILD-TYPE" "FTH1 WILD-TYPE" 
    TCGA-H6-A45N     TCGA-H8-A6C1     TCGA-HZ-7289     TCGA-HZ-7918 
"FTH1 WILD-TYPE" "FTH1 WILD-TYPE" "FTH1 WILD-TYPE" "FTH1 WILD-TYPE" 
    TCGA-HZ-7919     TCGA-HZ-7922     TCGA-HZ-7923     TCGA-HZ-7924 
"FTH1 WILD-TYPE"   "FTH1 MUTATED" "FTH1 WILD-TYPE" "FTH1 WILD-TYPE" 
    TCGA-HZ-7925     TCGA-HZ-7926     TCGA-HZ-8001     TCGA-HZ-8002 
"FTH1 WILD-TYPE" "FTH1 WILD-TYPE" "FTH1 WILD-TYPE" "FTH1 WILD-TYPE" 
    TCGA-HZ-8003     TCGA-HZ-8005     TCGA-HZ-8315     TCGA-HZ-8317 
"FTH1 WILD-TYPE" "FTH1 WILD-TYPE" "FTH1 WILD-TYPE" "FTH1 WILD-TYPE" 
    TCGA-HZ-8636     TCGA-HZ-8638     TCGA-HZ-A49G     TCGA-HZ-A49H 
"FTH1 WILD-TYPE" "FTH1 WILD-TYPE" "FTH1 WILD-TYPE" "FTH1 WILD-TYPE" 
    TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-IB-7644     TCGA-IB-7645 
"FTH1 WILD-TYPE" "FTH1 WILD-TYPE" "FTH1 WILD-TYPE" "FTH1 WILD-TYPE" 
    TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7651 
"FTH1 WILD-TYPE" "FTH1 WILD-TYPE" "FTH1 WILD-TYPE" "FTH1 WILD-TYPE" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887 
"FTH1 WILD-TYPE" "FTH1 WILD-TYPE" "FTH1 WILD-TYPE" "FTH1 WILD-TYPE" 
    TCGA-IB-7888     TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891 
"FTH1 WILD-TYPE" "FTH1 WILD-TYPE" "FTH1 WILD-TYPE" "FTH1 WILD-TYPE" 
    TCGA-IB-7893     TCGA-IB-7897     TCGA-IB-8126     TCGA-IB-8127 
"FTH1 WILD-TYPE" "FTH1 WILD-TYPE" "FTH1 WILD-TYPE" "FTH1 WILD-TYPE" 
    TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS 
"FTH1 WILD-TYPE" "FTH1 WILD-TYPE" "FTH1 WILD-TYPE" "FTH1 WILD-TYPE" 
    TCGA-IB-A5ST     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
"FTH1 WILD-TYPE" "FTH1 WILD-TYPE" "FTH1 WILD-TYPE" "FTH1 WILD-TYPE" 
    TCGA-PZ-A5RE     TCGA-Q3-A5QY     TCGA-US-A779     TCGA-US-A77E 
"FTH1 WILD-TYPE" "FTH1 WILD-TYPE" "FTH1 WILD-TYPE" "FTH1 WILD-TYPE" 
    TCGA-US-A77J 
  "FTH1 MUTATED" 
    TCGA-F2-6879     TCGA-F2-6880     TCGA-F2-7273     TCGA-F2-7276 
"FTH1 WILD-TYPE" "FTH1 WILD-TYPE" "FTH1 WILD-TYPE" "FTH1 WILD-TYPE" 
    TCGA-F2-A44G     TCGA-F2-A44H     TCGA-FB-A4P5     TCGA-FB-A4P6 
"FTH1 WILD-TYPE" "FTH1 WILD-TYPE" "FTH1 WILD-TYPE" "FTH1 WILD-TYPE" 
    TCGA-FB-A545     TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-FB-A7DR 
  "FTH1 MUTATED" "FTH1 WILD-TYPE" "FTH1 WILD-TYPE" "FTH1 WILD-TYPE" 
    TCGA-FZ-5920     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-H6-8124 
"FTH1 WILD-TYPE" "FTH1 WILD-TYPE" "FTH1 WILD-TYPE" "FTH1 WILD-TYPE" 
    TCGA-H6-A45N     TCGA-H8-A6C1     TCGA-HZ-7289     TCGA-HZ-7918 
"FTH1 WILD-TYPE" "FTH1 WILD-TYPE" "FTH1 WILD-TYPE" "FTH1 WILD-TYPE" 
    TCGA-HZ-7919     TCGA-HZ-7922     TCGA-HZ-7923     TCGA-HZ-7924 
"FTH1 WILD-TYPE"   "FTH1 MUTATED" "FTH1 WILD-TYPE" "FTH1 WILD-TYPE" 
    TCGA-HZ-7925     TCGA-HZ-7926     TCGA-HZ-8001     TCGA-HZ-8002 
"FTH1 WILD-TYPE" "FTH1 WILD-TYPE" "FTH1 WILD-TYPE" "FTH1 WILD-TYPE" 
    TCGA-HZ-8003     TCGA-HZ-8005     TCGA-HZ-8315     TCGA-HZ-8317 
"FTH1 WILD-TYPE" "FTH1 WILD-TYPE" "FTH1 WILD-TYPE" "FTH1 WILD-TYPE" 
    TCGA-HZ-8636     TCGA-HZ-8638     TCGA-HZ-A49G     TCGA-HZ-A49H 
"FTH1 WILD-TYPE" "FTH1 WILD-TYPE" "FTH1 WILD-TYPE" "FTH1 WILD-TYPE" 
    TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-IB-7644     TCGA-IB-7645 
"FTH1 WILD-TYPE" "FTH1 WILD-TYPE" "FTH1 WILD-TYPE" "FTH1 WILD-TYPE" 
    TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7651 
"FTH1 WILD-TYPE" "FTH1 WILD-TYPE" "FTH1 WILD-TYPE" "FTH1 WILD-TYPE" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887 
"FTH1 WILD-TYPE" "FTH1 WILD-TYPE" "FTH1 WILD-TYPE" "FTH1 WILD-TYPE" 
    TCGA-IB-7888     TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891 
"FTH1 WILD-TYPE" "FTH1 WILD-TYPE" "FTH1 WILD-TYPE" "FTH1 WILD-TYPE" 
    TCGA-IB-7893     TCGA-IB-7897     TCGA-IB-8126     TCGA-IB-8127 
"FTH1 WILD-TYPE" "FTH1 WILD-TYPE" "FTH1 WILD-TYPE" "FTH1 WILD-TYPE" 
    TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS 
"FTH1 WILD-TYPE" "FTH1 WILD-TYPE" "FTH1 WILD-TYPE" "FTH1 WILD-TYPE" 
    TCGA-IB-A5ST     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
"FTH1 WILD-TYPE" "FTH1 WILD-TYPE" "FTH1 WILD-TYPE" "FTH1 WILD-TYPE" 
    TCGA-PZ-A5RE     TCGA-Q3-A5QY     TCGA-US-A779     TCGA-US-A77E 
"FTH1 WILD-TYPE" "FTH1 WILD-TYPE" "FTH1 WILD-TYPE" "FTH1 WILD-TYPE" 
    TCGA-US-A77J 
  "FTH1 MUTATED" 
    TCGA-F2-6879     TCGA-F2-6880     TCGA-F2-7273     TCGA-F2-7276 
"FTH1 WILD-TYPE" "FTH1 WILD-TYPE" "FTH1 WILD-TYPE" "FTH1 WILD-TYPE" 
    TCGA-F2-A44G     TCGA-F2-A44H     TCGA-FB-A4P5     TCGA-FB-A4P6 
"FTH1 WILD-TYPE" "FTH1 WILD-TYPE" "FTH1 WILD-TYPE" "FTH1 WILD-TYPE" 
    TCGA-FB-A545     TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-FB-A7DR 
  "FTH1 MUTATED" "FTH1 WILD-TYPE" "FTH1 WILD-TYPE" "FTH1 WILD-TYPE" 
    TCGA-FZ-5920     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-H6-8124 
"FTH1 WILD-TYPE" "FTH1 WILD-TYPE" "FTH1 WILD-TYPE" "FTH1 WILD-TYPE" 
    TCGA-H6-A45N     TCGA-H8-A6C1     TCGA-HZ-7289     TCGA-HZ-7918 
"FTH1 WILD-TYPE" "FTH1 WILD-TYPE" "FTH1 WILD-TYPE" "FTH1 WILD-TYPE" 
    TCGA-HZ-7919     TCGA-HZ-7922     TCGA-HZ-7923     TCGA-HZ-7924 
"FTH1 WILD-TYPE"   "FTH1 MUTATED" "FTH1 WILD-TYPE" "FTH1 WILD-TYPE" 
    TCGA-HZ-7925     TCGA-HZ-7926     TCGA-HZ-8001     TCGA-HZ-8002 
"FTH1 WILD-TYPE" "FTH1 WILD-TYPE" "FTH1 WILD-TYPE" "FTH1 WILD-TYPE" 
    TCGA-HZ-8003     TCGA-HZ-8005     TCGA-HZ-8315     TCGA-HZ-8317 
"FTH1 WILD-TYPE" "FTH1 WILD-TYPE" "FTH1 WILD-TYPE" "FTH1 WILD-TYPE" 
    TCGA-HZ-8636     TCGA-HZ-8638     TCGA-HZ-A49G     TCGA-HZ-A49H 
"FTH1 WILD-TYPE" "FTH1 WILD-TYPE" "FTH1 WILD-TYPE" "FTH1 WILD-TYPE" 
    TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-IB-7644     TCGA-IB-7645 
"FTH1 WILD-TYPE" "FTH1 WILD-TYPE" "FTH1 WILD-TYPE" "FTH1 WILD-TYPE" 
    TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7651 
"FTH1 WILD-TYPE" "FTH1 WILD-TYPE" "FTH1 WILD-TYPE" "FTH1 WILD-TYPE" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887 
"FTH1 WILD-TYPE" "FTH1 WILD-TYPE" "FTH1 WILD-TYPE" "FTH1 WILD-TYPE" 
    TCGA-IB-7888     TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891 
"FTH1 WILD-TYPE" "FTH1 WILD-TYPE" "FTH1 WILD-TYPE" "FTH1 WILD-TYPE" 
    TCGA-IB-7893     TCGA-IB-7897     TCGA-IB-8126     TCGA-IB-8127 
"FTH1 WILD-TYPE" "FTH1 WILD-TYPE" "FTH1 WILD-TYPE" "FTH1 WILD-TYPE" 
    TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS 
"FTH1 WILD-TYPE" "FTH1 WILD-TYPE" "FTH1 WILD-TYPE" "FTH1 WILD-TYPE" 
    TCGA-IB-A5ST     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
"FTH1 WILD-TYPE" "FTH1 WILD-TYPE" "FTH1 WILD-TYPE" "FTH1 WILD-TYPE" 
    TCGA-PZ-A5RE     TCGA-Q3-A5QY     TCGA-US-A779     TCGA-US-A77E 
"FTH1 WILD-TYPE" "FTH1 WILD-TYPE" "FTH1 WILD-TYPE" "FTH1 WILD-TYPE" 
    TCGA-US-A77J 
  "FTH1 MUTATED" 
[1] "hr=" "1.3"
D265V2, continuous
                vv
clus             STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  FTH1 MUTATED          0        0         0         3         0        0
  FTH1 WILD-TYPE        1        4        11        48         2        3
D265V3, multiclass
                vv
clus             T1+T2 T3+T4
  FTH1 MUTATED       0     3
  FTH1 WILD-TYPE     6    63
D265V4, multiclass
       clus
vv      FTH1 MUTATED FTH1 WILD-TYPE
  T1+T2            0              6
  T3+T4            3             63
D265V5, binary
                cls
clus              0  1
  FTH1 MUTATED    0  3
  FTH1 WILD-TYPE 17 51
[1] "tbl2"
                cls
clus             [,1] [,2]
  FTH1 MUTATED      0    3
  FTH1 WILD-TYPE   17   51
   clus
vv  FTH1 MUTATED FTH1 WILD-TYPE
  0            0             17
  1            3             51
                vv
clus             M0 M1 MX
  FTH1 MUTATED    1  0  2
  FTH1 WILD-TYPE 38  3 28
D265V6, multiclass
    clus
vv   FTH1 MUTATED FTH1 WILD-TYPE
  M0            1             38
  M1            0              3
  MX            2             28
D265V7, binary
                cls
clus              0  1
  FTH1 MUTATED    3  0
  FTH1 WILD-TYPE 33 36
[1] "tbl2"
                cls
clus             [,1] [,2]
  FTH1 MUTATED      3    0
  FTH1 WILD-TYPE   33   36
        clus
vv       FTH1 MUTATED FTH1 WILD-TYPE
  FEMALE            3             33
  MALE              0             36
                vv
clus             PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  FTH1 MUTATED                                     3
  FTH1 WILD-TYPE                                  62
                vv
clus             PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  FTH1 MUTATED                                       0
  FTH1 WILD-TYPE                                     4
                vv
clus             PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  FTH1 MUTATED                                                  0
  FTH1 WILD-TYPE                                                2
D265V8, multiclass
                                                  clus
vv                                                 FTH1 MUTATED FTH1 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                         3             62
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                       0              4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA            0              2
D265V9, continuous
D265V10, continuous
                vv
clus             R0 R1 RX
  FTH1 MUTATED    2  0  0
  FTH1 WILD-TYPE 40 24  2
D265V11, multiclass
[1] "Remove cluster labels:" "FTH1 MUTATED"          
clus
  FTH1 MUTATED FTH1 WILD-TYPE 
             2             66 
    TCGA-F2-6879     TCGA-F2-6880     TCGA-F2-7273     TCGA-F2-7276 
"FTH1 WILD-TYPE" "FTH1 WILD-TYPE" "FTH1 WILD-TYPE" "FTH1 WILD-TYPE" 
    TCGA-F2-A44G     TCGA-F2-A44H     TCGA-FB-A4P5     TCGA-FB-A5VM 
"FTH1 WILD-TYPE" "FTH1 WILD-TYPE" "FTH1 WILD-TYPE" "FTH1 WILD-TYPE" 
    TCGA-FB-A78T     TCGA-FB-A7DR     TCGA-FZ-5920     TCGA-FZ-5922 
"FTH1 WILD-TYPE" "FTH1 WILD-TYPE" "FTH1 WILD-TYPE" "FTH1 WILD-TYPE" 
    TCGA-FZ-5923     TCGA-H6-8124     TCGA-H8-A6C1     TCGA-HZ-7289 
"FTH1 WILD-TYPE" "FTH1 WILD-TYPE" "FTH1 WILD-TYPE" "FTH1 WILD-TYPE" 
    TCGA-HZ-7918     TCGA-HZ-7919     TCGA-HZ-7920     TCGA-HZ-7923 
"FTH1 WILD-TYPE" "FTH1 WILD-TYPE" "FTH1 WILD-TYPE" "FTH1 WILD-TYPE" 
    TCGA-HZ-7924     TCGA-HZ-7925     TCGA-HZ-7926     TCGA-HZ-8001 
"FTH1 WILD-TYPE" "FTH1 WILD-TYPE" "FTH1 WILD-TYPE" "FTH1 WILD-TYPE" 
    TCGA-HZ-8002     TCGA-HZ-8003     TCGA-HZ-8005     TCGA-HZ-8315 
"FTH1 WILD-TYPE" "FTH1 WILD-TYPE" "FTH1 WILD-TYPE" "FTH1 WILD-TYPE" 
    TCGA-HZ-8317     TCGA-HZ-8636     TCGA-HZ-8637     TCGA-HZ-8638 
"FTH1 WILD-TYPE" "FTH1 WILD-TYPE" "FTH1 WILD-TYPE" "FTH1 WILD-TYPE" 
    TCGA-HZ-A49G     TCGA-HZ-A49H     TCGA-HZ-A49I     TCGA-HZ-A4BH 
"FTH1 WILD-TYPE" "FTH1 WILD-TYPE" "FTH1 WILD-TYPE" "FTH1 WILD-TYPE" 
    TCGA-HZ-A4BK     TCGA-IB-7644     TCGA-IB-7645     TCGA-IB-7646 
"FTH1 WILD-TYPE" "FTH1 WILD-TYPE" "FTH1 WILD-TYPE" "FTH1 WILD-TYPE" 
    TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7651     TCGA-IB-7652 
"FTH1 WILD-TYPE" "FTH1 WILD-TYPE" "FTH1 WILD-TYPE" "FTH1 WILD-TYPE" 
    TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887     TCGA-IB-7888 
"FTH1 WILD-TYPE" "FTH1 WILD-TYPE" "FTH1 WILD-TYPE" "FTH1 WILD-TYPE" 
    TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891     TCGA-IB-7893 
"FTH1 WILD-TYPE" "FTH1 WILD-TYPE" "FTH1 WILD-TYPE" "FTH1 WILD-TYPE" 
    TCGA-IB-7897     TCGA-IB-8126     TCGA-IB-8127     TCGA-IB-A5SO 
"FTH1 WILD-TYPE" "FTH1 WILD-TYPE" "FTH1 WILD-TYPE" "FTH1 WILD-TYPE" 
    TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS     TCGA-IB-A5ST 
"FTH1 WILD-TYPE" "FTH1 WILD-TYPE" "FTH1 WILD-TYPE" "FTH1 WILD-TYPE" 
    TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W     TCGA-Q3-A5QY 
"FTH1 WILD-TYPE" "FTH1 WILD-TYPE" "FTH1 WILD-TYPE" "FTH1 WILD-TYPE" 
    TCGA-US-A779     TCGA-US-A77E 
"FTH1 WILD-TYPE" "FTH1 WILD-TYPE" 
D265V12, continuous

Clustering(266) Variable = MRPS5 MUTATION ANALYSIS
D266V1, survival
                 sevent
clus2              0  1
  MRPS5 MUTATED    3  3
  MRPS5 WILD-TYPE 37 26
  MRPS5 MUTATED MRPS5 WILD-TYPE 
              6              63 
  MRPS5 MUTATED MRPS5 WILD-TYPE 
              3              26 
$`MRPS5 MUTATED`
TCGA-FB-A545 TCGA-HZ-A49G TCGA-IB-7651 TCGA-IB-7886 TCGA-IB-8127 TCGA-IB-A5SQ 
       12.66         0.76        19.82         4.04        17.16         7.20 

$`MRPS5 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P5 TCGA-FB-A4P6 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR TCGA-FZ-5920 
        0.13        11.93         2.47         0.03         5.46         2.01 
TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7289 
       36.20        20.81        12.89         7.66        13.02         7.89 
TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 
        0.92         0.66         0.13         0.26        12.13        11.87 
TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 
        0.26         0.62         0.79         0.69         3.95         0.92 
TCGA-HZ-8317 TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK 
        0.53         0.16         2.99         0.95         6.38         1.51 
TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7652 
       11.41        49.38         4.77        21.90        15.35        15.65 
TCGA-IB-7885 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 
       27.98         3.62        43.79        15.81        19.66        16.04 
TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SS 
        3.85        15.98         0.56        10.82         9.86        15.12 
TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W TCGA-PZ-A5RE TCGA-Q3-A5QY 
        0.26         1.35         4.18         3.62         8.12        13.68 
TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
       16.80        14.14        18.67 

  MRPS5 MUTATED MRPS5 WILD-TYPE 
           0.76            0.03 
  MRPS5 MUTATED MRPS5 WILD-TYPE 
          19.82           49.38 
  MRPS5 MUTATED MRPS5 WILD-TYPE 
           9.93            7.66 
[1] "0.8 - 19.8 (9.9)" "0.0 - 49.4 (7.7)"
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
  "MRPS5 MUTATED" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE"   "MRPS5 MUTATED" "MRPS5 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE"   "MRPS5 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE"   "MRPS5 MUTATED" "MRPS5 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE"   "MRPS5 MUTATED" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE"   "MRPS5 MUTATED" "MRPS5 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" 
     TCGA-US-A77J 
"MRPS5 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
  "MRPS5 MUTATED" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE"   "MRPS5 MUTATED" "MRPS5 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE"   "MRPS5 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE"   "MRPS5 MUTATED" "MRPS5 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE"   "MRPS5 MUTATED" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE"   "MRPS5 MUTATED" "MRPS5 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" 
     TCGA-US-A77J 
"MRPS5 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
  "MRPS5 MUTATED" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE"   "MRPS5 MUTATED" "MRPS5 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE"   "MRPS5 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE"   "MRPS5 MUTATED" "MRPS5 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE"   "MRPS5 MUTATED" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE"   "MRPS5 MUTATED" "MRPS5 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" "MRPS5 WILD-TYPE" 
     TCGA-US-A77J 
"MRPS5 WILD-TYPE" 
[1] "hr=" "1.1"
D266V2, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  MRPS5 MUTATED          0        1         0         5         0        0
  MRPS5 WILD-TYPE        1        3        11        46         2        3
D266V3, multiclass
                 vv
clus              T1+T2 T3+T4
  MRPS5 MUTATED       2     4
  MRPS5 WILD-TYPE     4    62
D266V4, multiclass
       clus
vv      MRPS5 MUTATED MRPS5 WILD-TYPE
  T1+T2             2               4
  T3+T4             4              62
D266V5, binary
                 cls
clus               0  1
  MRPS5 MUTATED    1  5
  MRPS5 WILD-TYPE 16 49
[1] "tbl2"
                 cls
clus              [,1] [,2]
  MRPS5 MUTATED      1    5
  MRPS5 WILD-TYPE   16   49
   clus
vv  MRPS5 MUTATED MRPS5 WILD-TYPE
  0             1              16
  1             5              49
                 vv
clus              M0 M1 MX
  MRPS5 MUTATED    5  0  1
  MRPS5 WILD-TYPE 34  3 29
D266V6, multiclass
    clus
vv   MRPS5 MUTATED MRPS5 WILD-TYPE
  M0             5              34
  M1             0               3
  MX             1              29
D266V7, binary
                 cls
clus               0  1
  MRPS5 MUTATED    4  2
  MRPS5 WILD-TYPE 32 34
[1] "tbl2"
                 cls
clus              [,1] [,2]
  MRPS5 MUTATED      4    2
  MRPS5 WILD-TYPE   32   34
        clus
vv       MRPS5 MUTATED MRPS5 WILD-TYPE
  FEMALE             4              32
  MALE               2              34
                 vv
clus              PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  MRPS5 MUTATED                                     6
  MRPS5 WILD-TYPE                                  59
                 vv
clus              PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  MRPS5 MUTATED                                       0
  MRPS5 WILD-TYPE                                     4
                 vv
clus              PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  MRPS5 MUTATED                                                  0
  MRPS5 WILD-TYPE                                                2
D266V8, multiclass
                                                  clus
vv                                                 MRPS5 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                          6
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                        0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA             0
                                                  clus
vv                                                 MRPS5 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                           59
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                          4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA               2
D266V9, continuous
D266V10, continuous
                 vv
clus              R0 R1 RX
  MRPS5 MUTATED    2  3  0
  MRPS5 WILD-TYPE 40 21  2
D266V11, multiclass
    clus
vv   MRPS5 MUTATED MRPS5 WILD-TYPE
  R0             2              40
  R1             3              21
  RX             0               2
D266V12, continuous

Clustering(267) Variable = RAI1 MUTATION ANALYSIS
D267V1, survival
                sevent
clus2             0  1
  RAI1 MUTATED    6  2
  RAI1 WILD-TYPE 34 27
  RAI1 MUTATED RAI1 WILD-TYPE 
             8             61 
  RAI1 MUTATED RAI1 WILD-TYPE 
             2             27 
$`RAI1 MUTATED`
TCGA-H6-8124 TCGA-HZ-8002 TCGA-HZ-8317 TCGA-HZ-A4BH TCGA-IB-7651 TCGA-IB-7652 
       12.89         0.79         0.53         6.38        19.82        15.65 
TCGA-IB-7888 TCGA-PZ-A5RE 
       43.79         8.12 

$`RAI1 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P5 TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR 
        0.13        11.93        12.66         2.47         0.03         5.46 
TCGA-FZ-5920 TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7289 
        2.01        36.20        20.81         7.66        13.02         7.89 
TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 
        0.92         0.66         0.13         0.26        12.13        11.87 
TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8636 
        0.26         0.62         0.69         3.95         0.92         0.16 
TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7645 
        2.99         0.76         0.95         1.51        11.41        49.38 
TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 
        4.77        21.90        15.35        27.98         4.04         3.62 
TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-8126 
       15.81        19.66        16.04         3.85        15.98         0.56 
TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST 
       17.16        10.82         9.86         7.20        15.12         0.26 
TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E 
        1.35         4.18         3.62        13.68        16.80        14.14 
TCGA-US-A77J 
       18.67 

  RAI1 MUTATED RAI1 WILD-TYPE 
          0.53           0.03 
  RAI1 MUTATED RAI1 WILD-TYPE 
         43.79          49.38 
  RAI1 MUTATED RAI1 WILD-TYPE 
        10.505          7.200 
[1] "0.5 - 43.8 (10.5)" "0.0 - 49.4 (7.2)" 
    TCGA-F2-6879     TCGA-F2-6880     TCGA-F2-7273     TCGA-F2-7276 
"RAI1 WILD-TYPE" "RAI1 WILD-TYPE" "RAI1 WILD-TYPE" "RAI1 WILD-TYPE" 
    TCGA-F2-A44G     TCGA-F2-A44H     TCGA-FB-A4P5     TCGA-FB-A4P6 
"RAI1 WILD-TYPE" "RAI1 WILD-TYPE" "RAI1 WILD-TYPE" "RAI1 WILD-TYPE" 
    TCGA-FB-A545     TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-FB-A7DR 
"RAI1 WILD-TYPE" "RAI1 WILD-TYPE" "RAI1 WILD-TYPE" "RAI1 WILD-TYPE" 
    TCGA-FZ-5920     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-H6-8124 
"RAI1 WILD-TYPE" "RAI1 WILD-TYPE" "RAI1 WILD-TYPE"   "RAI1 MUTATED" 
    TCGA-H6-A45N     TCGA-H8-A6C1     TCGA-HZ-7289     TCGA-HZ-7918 
"RAI1 WILD-TYPE" "RAI1 WILD-TYPE" "RAI1 WILD-TYPE" "RAI1 WILD-TYPE" 
    TCGA-HZ-7919     TCGA-HZ-7922     TCGA-HZ-7923     TCGA-HZ-7924 
"RAI1 WILD-TYPE" "RAI1 WILD-TYPE" "RAI1 WILD-TYPE" "RAI1 WILD-TYPE" 
    TCGA-HZ-7925     TCGA-HZ-7926     TCGA-HZ-8001     TCGA-HZ-8002 
"RAI1 WILD-TYPE" "RAI1 WILD-TYPE" "RAI1 WILD-TYPE"   "RAI1 MUTATED" 
    TCGA-HZ-8003     TCGA-HZ-8005     TCGA-HZ-8315     TCGA-HZ-8317 
"RAI1 WILD-TYPE" "RAI1 WILD-TYPE" "RAI1 WILD-TYPE"   "RAI1 MUTATED" 
    TCGA-HZ-8636     TCGA-HZ-8638     TCGA-HZ-A49G     TCGA-HZ-A49H 
"RAI1 WILD-TYPE" "RAI1 WILD-TYPE" "RAI1 WILD-TYPE" "RAI1 WILD-TYPE" 
    TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-IB-7644     TCGA-IB-7645 
  "RAI1 MUTATED" "RAI1 WILD-TYPE" "RAI1 WILD-TYPE" "RAI1 WILD-TYPE" 
    TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7651 
"RAI1 WILD-TYPE" "RAI1 WILD-TYPE" "RAI1 WILD-TYPE"   "RAI1 MUTATED" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887 
  "RAI1 MUTATED" "RAI1 WILD-TYPE" "RAI1 WILD-TYPE" "RAI1 WILD-TYPE" 
    TCGA-IB-7888     TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891 
  "RAI1 MUTATED" "RAI1 WILD-TYPE" "RAI1 WILD-TYPE" "RAI1 WILD-TYPE" 
    TCGA-IB-7893     TCGA-IB-7897     TCGA-IB-8126     TCGA-IB-8127 
"RAI1 WILD-TYPE" "RAI1 WILD-TYPE" "RAI1 WILD-TYPE" "RAI1 WILD-TYPE" 
    TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS 
"RAI1 WILD-TYPE" "RAI1 WILD-TYPE" "RAI1 WILD-TYPE" "RAI1 WILD-TYPE" 
    TCGA-IB-A5ST     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
"RAI1 WILD-TYPE" "RAI1 WILD-TYPE" "RAI1 WILD-TYPE" "RAI1 WILD-TYPE" 
    TCGA-PZ-A5RE     TCGA-Q3-A5QY     TCGA-US-A779     TCGA-US-A77E 
  "RAI1 MUTATED" "RAI1 WILD-TYPE" "RAI1 WILD-TYPE" "RAI1 WILD-TYPE" 
    TCGA-US-A77J 
"RAI1 WILD-TYPE" 
    TCGA-F2-6879     TCGA-F2-6880     TCGA-F2-7273     TCGA-F2-7276 
"RAI1 WILD-TYPE" "RAI1 WILD-TYPE" "RAI1 WILD-TYPE" "RAI1 WILD-TYPE" 
    TCGA-F2-A44G     TCGA-F2-A44H     TCGA-FB-A4P5     TCGA-FB-A4P6 
"RAI1 WILD-TYPE" "RAI1 WILD-TYPE" "RAI1 WILD-TYPE" "RAI1 WILD-TYPE" 
    TCGA-FB-A545     TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-FB-A7DR 
"RAI1 WILD-TYPE" "RAI1 WILD-TYPE" "RAI1 WILD-TYPE" "RAI1 WILD-TYPE" 
    TCGA-FZ-5920     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-H6-8124 
"RAI1 WILD-TYPE" "RAI1 WILD-TYPE" "RAI1 WILD-TYPE"   "RAI1 MUTATED" 
    TCGA-H6-A45N     TCGA-H8-A6C1     TCGA-HZ-7289     TCGA-HZ-7918 
"RAI1 WILD-TYPE" "RAI1 WILD-TYPE" "RAI1 WILD-TYPE" "RAI1 WILD-TYPE" 
    TCGA-HZ-7919     TCGA-HZ-7922     TCGA-HZ-7923     TCGA-HZ-7924 
"RAI1 WILD-TYPE" "RAI1 WILD-TYPE" "RAI1 WILD-TYPE" "RAI1 WILD-TYPE" 
    TCGA-HZ-7925     TCGA-HZ-7926     TCGA-HZ-8001     TCGA-HZ-8002 
"RAI1 WILD-TYPE" "RAI1 WILD-TYPE" "RAI1 WILD-TYPE"   "RAI1 MUTATED" 
    TCGA-HZ-8003     TCGA-HZ-8005     TCGA-HZ-8315     TCGA-HZ-8317 
"RAI1 WILD-TYPE" "RAI1 WILD-TYPE" "RAI1 WILD-TYPE"   "RAI1 MUTATED" 
    TCGA-HZ-8636     TCGA-HZ-8638     TCGA-HZ-A49G     TCGA-HZ-A49H 
"RAI1 WILD-TYPE" "RAI1 WILD-TYPE" "RAI1 WILD-TYPE" "RAI1 WILD-TYPE" 
    TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-IB-7644     TCGA-IB-7645 
  "RAI1 MUTATED" "RAI1 WILD-TYPE" "RAI1 WILD-TYPE" "RAI1 WILD-TYPE" 
    TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7651 
"RAI1 WILD-TYPE" "RAI1 WILD-TYPE" "RAI1 WILD-TYPE"   "RAI1 MUTATED" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887 
  "RAI1 MUTATED" "RAI1 WILD-TYPE" "RAI1 WILD-TYPE" "RAI1 WILD-TYPE" 
    TCGA-IB-7888     TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891 
  "RAI1 MUTATED" "RAI1 WILD-TYPE" "RAI1 WILD-TYPE" "RAI1 WILD-TYPE" 
    TCGA-IB-7893     TCGA-IB-7897     TCGA-IB-8126     TCGA-IB-8127 
"RAI1 WILD-TYPE" "RAI1 WILD-TYPE" "RAI1 WILD-TYPE" "RAI1 WILD-TYPE" 
    TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS 
"RAI1 WILD-TYPE" "RAI1 WILD-TYPE" "RAI1 WILD-TYPE" "RAI1 WILD-TYPE" 
    TCGA-IB-A5ST     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
"RAI1 WILD-TYPE" "RAI1 WILD-TYPE" "RAI1 WILD-TYPE" "RAI1 WILD-TYPE" 
    TCGA-PZ-A5RE     TCGA-Q3-A5QY     TCGA-US-A779     TCGA-US-A77E 
  "RAI1 MUTATED" "RAI1 WILD-TYPE" "RAI1 WILD-TYPE" "RAI1 WILD-TYPE" 
    TCGA-US-A77J 
"RAI1 WILD-TYPE" 
    TCGA-F2-6879     TCGA-F2-6880     TCGA-F2-7273     TCGA-F2-7276 
"RAI1 WILD-TYPE" "RAI1 WILD-TYPE" "RAI1 WILD-TYPE" "RAI1 WILD-TYPE" 
    TCGA-F2-A44G     TCGA-F2-A44H     TCGA-FB-A4P5     TCGA-FB-A4P6 
"RAI1 WILD-TYPE" "RAI1 WILD-TYPE" "RAI1 WILD-TYPE" "RAI1 WILD-TYPE" 
    TCGA-FB-A545     TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-FB-A7DR 
"RAI1 WILD-TYPE" "RAI1 WILD-TYPE" "RAI1 WILD-TYPE" "RAI1 WILD-TYPE" 
    TCGA-FZ-5920     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-H6-8124 
"RAI1 WILD-TYPE" "RAI1 WILD-TYPE" "RAI1 WILD-TYPE"   "RAI1 MUTATED" 
    TCGA-H6-A45N     TCGA-H8-A6C1     TCGA-HZ-7289     TCGA-HZ-7918 
"RAI1 WILD-TYPE" "RAI1 WILD-TYPE" "RAI1 WILD-TYPE" "RAI1 WILD-TYPE" 
    TCGA-HZ-7919     TCGA-HZ-7922     TCGA-HZ-7923     TCGA-HZ-7924 
"RAI1 WILD-TYPE" "RAI1 WILD-TYPE" "RAI1 WILD-TYPE" "RAI1 WILD-TYPE" 
    TCGA-HZ-7925     TCGA-HZ-7926     TCGA-HZ-8001     TCGA-HZ-8002 
"RAI1 WILD-TYPE" "RAI1 WILD-TYPE" "RAI1 WILD-TYPE"   "RAI1 MUTATED" 
    TCGA-HZ-8003     TCGA-HZ-8005     TCGA-HZ-8315     TCGA-HZ-8317 
"RAI1 WILD-TYPE" "RAI1 WILD-TYPE" "RAI1 WILD-TYPE"   "RAI1 MUTATED" 
    TCGA-HZ-8636     TCGA-HZ-8638     TCGA-HZ-A49G     TCGA-HZ-A49H 
"RAI1 WILD-TYPE" "RAI1 WILD-TYPE" "RAI1 WILD-TYPE" "RAI1 WILD-TYPE" 
    TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-IB-7644     TCGA-IB-7645 
  "RAI1 MUTATED" "RAI1 WILD-TYPE" "RAI1 WILD-TYPE" "RAI1 WILD-TYPE" 
    TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7651 
"RAI1 WILD-TYPE" "RAI1 WILD-TYPE" "RAI1 WILD-TYPE"   "RAI1 MUTATED" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887 
  "RAI1 MUTATED" "RAI1 WILD-TYPE" "RAI1 WILD-TYPE" "RAI1 WILD-TYPE" 
    TCGA-IB-7888     TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891 
  "RAI1 MUTATED" "RAI1 WILD-TYPE" "RAI1 WILD-TYPE" "RAI1 WILD-TYPE" 
    TCGA-IB-7893     TCGA-IB-7897     TCGA-IB-8126     TCGA-IB-8127 
"RAI1 WILD-TYPE" "RAI1 WILD-TYPE" "RAI1 WILD-TYPE" "RAI1 WILD-TYPE" 
    TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS 
"RAI1 WILD-TYPE" "RAI1 WILD-TYPE" "RAI1 WILD-TYPE" "RAI1 WILD-TYPE" 
    TCGA-IB-A5ST     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
"RAI1 WILD-TYPE" "RAI1 WILD-TYPE" "RAI1 WILD-TYPE" "RAI1 WILD-TYPE" 
    TCGA-PZ-A5RE     TCGA-Q3-A5QY     TCGA-US-A779     TCGA-US-A77E 
  "RAI1 MUTATED" "RAI1 WILD-TYPE" "RAI1 WILD-TYPE" "RAI1 WILD-TYPE" 
    TCGA-US-A77J 
"RAI1 WILD-TYPE" 
[1] "hr=" "2.9"
D267V2, continuous
                vv
clus             STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  RAI1 MUTATED          0        0         1         7         0        0
  RAI1 WILD-TYPE        1        4        10        44         2        3
D267V3, multiclass
                vv
clus             T1+T2 T3+T4
  RAI1 MUTATED       0     8
  RAI1 WILD-TYPE     6    58
D267V4, multiclass
       clus
vv      RAI1 MUTATED RAI1 WILD-TYPE
  T1+T2            0              6
  T3+T4            8             58
D267V5, binary
                cls
clus              0  1
  RAI1 MUTATED    1  7
  RAI1 WILD-TYPE 16 47
[1] "tbl2"
                cls
clus             [,1] [,2]
  RAI1 MUTATED      1    7
  RAI1 WILD-TYPE   16   47
   clus
vv  RAI1 MUTATED RAI1 WILD-TYPE
  0            1             16
  1            7             47
                vv
clus             M0 M1 MX
  RAI1 MUTATED    4  0  4
  RAI1 WILD-TYPE 35  3 26
D267V6, multiclass
    clus
vv   RAI1 MUTATED RAI1 WILD-TYPE
  M0            4             35
  M1            0              3
  MX            4             26
D267V7, binary
                cls
clus              0  1
  RAI1 MUTATED    6  2
  RAI1 WILD-TYPE 30 34
[1] "tbl2"
                cls
clus             [,1] [,2]
  RAI1 MUTATED      6    2
  RAI1 WILD-TYPE   30   34
        clus
vv       RAI1 MUTATED RAI1 WILD-TYPE
  FEMALE            6             30
  MALE              2             34
                vv
clus             PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  RAI1 MUTATED                                     8
  RAI1 WILD-TYPE                                  57
                vv
clus             PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  RAI1 MUTATED                                       0
  RAI1 WILD-TYPE                                     4
                vv
clus             PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  RAI1 MUTATED                                                  0
  RAI1 WILD-TYPE                                                2
D267V8, multiclass
                                                  clus
vv                                                 RAI1 MUTATED RAI1 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                         8             57
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                       0              4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA            0              2
D267V9, continuous
[1] "Remove cluster labels:" "RAI1 MUTATED"          
clus
  RAI1 MUTATED RAI1 WILD-TYPE 
             2             20 
    TCGA-F2-6880     TCGA-FB-A4P5     TCGA-FB-A4P6     TCGA-FB-A5VM 
"RAI1 WILD-TYPE" "RAI1 WILD-TYPE" "RAI1 WILD-TYPE" "RAI1 WILD-TYPE" 
    TCGA-FB-A78T     TCGA-FB-A7DR     TCGA-H6-A45N     TCGA-H8-A6C1 
"RAI1 WILD-TYPE" "RAI1 WILD-TYPE" "RAI1 WILD-TYPE" "RAI1 WILD-TYPE" 
    TCGA-IB-7644     TCGA-IB-7649     TCGA-IB-7885     TCGA-IB-7886 
"RAI1 WILD-TYPE" "RAI1 WILD-TYPE" "RAI1 WILD-TYPE" "RAI1 WILD-TYPE" 
    TCGA-IB-7887     TCGA-IB-7891     TCGA-IB-8126     TCGA-IB-8127 
"RAI1 WILD-TYPE" "RAI1 WILD-TYPE" "RAI1 WILD-TYPE" "RAI1 WILD-TYPE" 
    TCGA-IB-A5SS     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
"RAI1 WILD-TYPE" "RAI1 WILD-TYPE" "RAI1 WILD-TYPE" "RAI1 WILD-TYPE" 
D267V10, continuous
[1] "Remove cluster labels:" "RAI1 MUTATED"          
clus
  RAI1 MUTATED RAI1 WILD-TYPE 
             2             17 
    TCGA-FB-A4P5     TCGA-FB-A4P6     TCGA-FB-A5VM     TCGA-FB-A78T 
"RAI1 WILD-TYPE" "RAI1 WILD-TYPE" "RAI1 WILD-TYPE" "RAI1 WILD-TYPE" 
    TCGA-FB-A7DR     TCGA-H8-A6C1     TCGA-IB-7644     TCGA-IB-7649 
"RAI1 WILD-TYPE" "RAI1 WILD-TYPE" "RAI1 WILD-TYPE" "RAI1 WILD-TYPE" 
    TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7891     TCGA-IB-8126 
"RAI1 WILD-TYPE" "RAI1 WILD-TYPE" "RAI1 WILD-TYPE" "RAI1 WILD-TYPE" 
    TCGA-IB-8127     TCGA-IB-A5SS     TCGA-IB-A6UG     TCGA-LB-A7SX 
"RAI1 WILD-TYPE" "RAI1 WILD-TYPE" "RAI1 WILD-TYPE" "RAI1 WILD-TYPE" 
    TCGA-OE-A75W 
"RAI1 WILD-TYPE" 
                vv
clus             R0 R1 RX
  RAI1 MUTATED    4  3  0
  RAI1 WILD-TYPE 38 21  2
D267V11, multiclass
    clus
vv   RAI1 MUTATED RAI1 WILD-TYPE
  R0            4             38
  R1            3             21
  RX            0              2
D267V12, continuous

Clustering(268) Variable = RUNX1T1 MUTATION ANALYSIS
D268V1, survival
                   sevent
clus2                0  1
  RUNX1T1 MUTATED    4  3
  RUNX1T1 WILD-TYPE 36 26
  RUNX1T1 MUTATED RUNX1T1 WILD-TYPE 
                7                62 
  RUNX1T1 MUTATED RUNX1T1 WILD-TYPE 
                3                26 
$`RUNX1T1 MUTATED`
TCGA-F2-6879 TCGA-FB-A545 TCGA-H6-A45N TCGA-HZ-8002 TCGA-HZ-8315 TCGA-IB-7651 
       10.98        12.66         7.66         0.79         0.92        19.82 
TCGA-PZ-A5RE 
        8.12 

$`RUNX1T1 WILD-TYPE`
TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H TCGA-FB-A4P5 
        9.70        11.84         7.10         5.03        19.27         0.13 
TCGA-FB-A4P6 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR TCGA-FZ-5920 TCGA-FZ-5922 
       11.93         2.47         0.03         5.46         2.01        36.20 
TCGA-FZ-5923 TCGA-H6-8124 TCGA-H8-A6C1 TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-7919 
       20.81        12.89        13.02         7.89         0.92         0.66 
TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8001 
        0.13         0.26        12.13        11.87         0.26         0.62 
TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8317 TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G 
        0.69         3.95         0.53         0.16         2.99         0.76 
TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7646 
        0.95         6.38         1.51        11.41        49.38         4.77 
TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 
       21.90        15.35        15.65        27.98         4.04         3.62 
TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-7897 
       43.79        15.81        19.66        16.04         3.85        15.98 
TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS 
        0.56        17.16        10.82         9.86         7.20        15.12 
TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W TCGA-Q3-A5QY TCGA-US-A779 
        0.26         1.35         4.18         3.62        13.68        16.80 
TCGA-US-A77E TCGA-US-A77J 
       14.14        18.67 

  RUNX1T1 MUTATED RUNX1T1 WILD-TYPE 
             0.79              0.03 
  RUNX1T1 MUTATED RUNX1T1 WILD-TYPE 
            19.82             49.38 
  RUNX1T1 MUTATED RUNX1T1 WILD-TYPE 
             8.12              7.15 
[1] "0.8 - 19.8 (8.1)" "0.0 - 49.4 (7.2)"
       TCGA-F2-6879        TCGA-F2-6880        TCGA-F2-7273        TCGA-F2-7276 
  "RUNX1T1 MUTATED" "RUNX1T1 WILD-TYPE" "RUNX1T1 WILD-TYPE" "RUNX1T1 WILD-TYPE" 
       TCGA-F2-A44G        TCGA-F2-A44H        TCGA-FB-A4P5        TCGA-FB-A4P6 
"RUNX1T1 WILD-TYPE" "RUNX1T1 WILD-TYPE" "RUNX1T1 WILD-TYPE" "RUNX1T1 WILD-TYPE" 
       TCGA-FB-A545        TCGA-FB-A5VM        TCGA-FB-A78T        TCGA-FB-A7DR 
  "RUNX1T1 MUTATED" "RUNX1T1 WILD-TYPE" "RUNX1T1 WILD-TYPE" "RUNX1T1 WILD-TYPE" 
       TCGA-FZ-5920        TCGA-FZ-5922        TCGA-FZ-5923        TCGA-H6-8124 
"RUNX1T1 WILD-TYPE" "RUNX1T1 WILD-TYPE" "RUNX1T1 WILD-TYPE" "RUNX1T1 WILD-TYPE" 
       TCGA-H6-A45N        TCGA-H8-A6C1        TCGA-HZ-7289        TCGA-HZ-7918 
  "RUNX1T1 MUTATED" "RUNX1T1 WILD-TYPE" "RUNX1T1 WILD-TYPE" "RUNX1T1 WILD-TYPE" 
       TCGA-HZ-7919        TCGA-HZ-7922        TCGA-HZ-7923        TCGA-HZ-7924 
"RUNX1T1 WILD-TYPE" "RUNX1T1 WILD-TYPE" "RUNX1T1 WILD-TYPE" "RUNX1T1 WILD-TYPE" 
       TCGA-HZ-7925        TCGA-HZ-7926        TCGA-HZ-8001        TCGA-HZ-8002 
"RUNX1T1 WILD-TYPE" "RUNX1T1 WILD-TYPE" "RUNX1T1 WILD-TYPE"   "RUNX1T1 MUTATED" 
       TCGA-HZ-8003        TCGA-HZ-8005        TCGA-HZ-8315        TCGA-HZ-8317 
"RUNX1T1 WILD-TYPE" "RUNX1T1 WILD-TYPE"   "RUNX1T1 MUTATED" "RUNX1T1 WILD-TYPE" 
       TCGA-HZ-8636        TCGA-HZ-8638        TCGA-HZ-A49G        TCGA-HZ-A49H 
"RUNX1T1 WILD-TYPE" "RUNX1T1 WILD-TYPE" "RUNX1T1 WILD-TYPE" "RUNX1T1 WILD-TYPE" 
       TCGA-HZ-A4BH        TCGA-HZ-A4BK        TCGA-IB-7644        TCGA-IB-7645 
"RUNX1T1 WILD-TYPE" "RUNX1T1 WILD-TYPE" "RUNX1T1 WILD-TYPE" "RUNX1T1 WILD-TYPE" 
       TCGA-IB-7646        TCGA-IB-7647        TCGA-IB-7649        TCGA-IB-7651 
"RUNX1T1 WILD-TYPE" "RUNX1T1 WILD-TYPE" "RUNX1T1 WILD-TYPE"   "RUNX1T1 MUTATED" 
       TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-7886        TCGA-IB-7887 
"RUNX1T1 WILD-TYPE" "RUNX1T1 WILD-TYPE" "RUNX1T1 WILD-TYPE" "RUNX1T1 WILD-TYPE" 
       TCGA-IB-7888        TCGA-IB-7889        TCGA-IB-7890        TCGA-IB-7891 
"RUNX1T1 WILD-TYPE" "RUNX1T1 WILD-TYPE" "RUNX1T1 WILD-TYPE" "RUNX1T1 WILD-TYPE" 
       TCGA-IB-7893        TCGA-IB-7897        TCGA-IB-8126        TCGA-IB-8127 
"RUNX1T1 WILD-TYPE" "RUNX1T1 WILD-TYPE" "RUNX1T1 WILD-TYPE" "RUNX1T1 WILD-TYPE" 
       TCGA-IB-A5SO        TCGA-IB-A5SP        TCGA-IB-A5SQ        TCGA-IB-A5SS 
"RUNX1T1 WILD-TYPE" "RUNX1T1 WILD-TYPE" "RUNX1T1 WILD-TYPE" "RUNX1T1 WILD-TYPE" 
       TCGA-IB-A5ST        TCGA-IB-A6UG        TCGA-LB-A7SX        TCGA-OE-A75W 
"RUNX1T1 WILD-TYPE" "RUNX1T1 WILD-TYPE" "RUNX1T1 WILD-TYPE" "RUNX1T1 WILD-TYPE" 
       TCGA-PZ-A5RE        TCGA-Q3-A5QY        TCGA-US-A779        TCGA-US-A77E 
  "RUNX1T1 MUTATED" "RUNX1T1 WILD-TYPE" "RUNX1T1 WILD-TYPE" "RUNX1T1 WILD-TYPE" 
       TCGA-US-A77J 
"RUNX1T1 WILD-TYPE" 
       TCGA-F2-6879        TCGA-F2-6880        TCGA-F2-7273        TCGA-F2-7276 
  "RUNX1T1 MUTATED" "RUNX1T1 WILD-TYPE" "RUNX1T1 WILD-TYPE" "RUNX1T1 WILD-TYPE" 
       TCGA-F2-A44G        TCGA-F2-A44H        TCGA-FB-A4P5        TCGA-FB-A4P6 
"RUNX1T1 WILD-TYPE" "RUNX1T1 WILD-TYPE" "RUNX1T1 WILD-TYPE" "RUNX1T1 WILD-TYPE" 
       TCGA-FB-A545        TCGA-FB-A5VM        TCGA-FB-A78T        TCGA-FB-A7DR 
  "RUNX1T1 MUTATED" "RUNX1T1 WILD-TYPE" "RUNX1T1 WILD-TYPE" "RUNX1T1 WILD-TYPE" 
       TCGA-FZ-5920        TCGA-FZ-5922        TCGA-FZ-5923        TCGA-H6-8124 
"RUNX1T1 WILD-TYPE" "RUNX1T1 WILD-TYPE" "RUNX1T1 WILD-TYPE" "RUNX1T1 WILD-TYPE" 
       TCGA-H6-A45N        TCGA-H8-A6C1        TCGA-HZ-7289        TCGA-HZ-7918 
  "RUNX1T1 MUTATED" "RUNX1T1 WILD-TYPE" "RUNX1T1 WILD-TYPE" "RUNX1T1 WILD-TYPE" 
       TCGA-HZ-7919        TCGA-HZ-7922        TCGA-HZ-7923        TCGA-HZ-7924 
"RUNX1T1 WILD-TYPE" "RUNX1T1 WILD-TYPE" "RUNX1T1 WILD-TYPE" "RUNX1T1 WILD-TYPE" 
       TCGA-HZ-7925        TCGA-HZ-7926        TCGA-HZ-8001        TCGA-HZ-8002 
"RUNX1T1 WILD-TYPE" "RUNX1T1 WILD-TYPE" "RUNX1T1 WILD-TYPE"   "RUNX1T1 MUTATED" 
       TCGA-HZ-8003        TCGA-HZ-8005        TCGA-HZ-8315        TCGA-HZ-8317 
"RUNX1T1 WILD-TYPE" "RUNX1T1 WILD-TYPE"   "RUNX1T1 MUTATED" "RUNX1T1 WILD-TYPE" 
       TCGA-HZ-8636        TCGA-HZ-8638        TCGA-HZ-A49G        TCGA-HZ-A49H 
"RUNX1T1 WILD-TYPE" "RUNX1T1 WILD-TYPE" "RUNX1T1 WILD-TYPE" "RUNX1T1 WILD-TYPE" 
       TCGA-HZ-A4BH        TCGA-HZ-A4BK        TCGA-IB-7644        TCGA-IB-7645 
"RUNX1T1 WILD-TYPE" "RUNX1T1 WILD-TYPE" "RUNX1T1 WILD-TYPE" "RUNX1T1 WILD-TYPE" 
       TCGA-IB-7646        TCGA-IB-7647        TCGA-IB-7649        TCGA-IB-7651 
"RUNX1T1 WILD-TYPE" "RUNX1T1 WILD-TYPE" "RUNX1T1 WILD-TYPE"   "RUNX1T1 MUTATED" 
       TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-7886        TCGA-IB-7887 
"RUNX1T1 WILD-TYPE" "RUNX1T1 WILD-TYPE" "RUNX1T1 WILD-TYPE" "RUNX1T1 WILD-TYPE" 
       TCGA-IB-7888        TCGA-IB-7889        TCGA-IB-7890        TCGA-IB-7891 
"RUNX1T1 WILD-TYPE" "RUNX1T1 WILD-TYPE" "RUNX1T1 WILD-TYPE" "RUNX1T1 WILD-TYPE" 
       TCGA-IB-7893        TCGA-IB-7897        TCGA-IB-8126        TCGA-IB-8127 
"RUNX1T1 WILD-TYPE" "RUNX1T1 WILD-TYPE" "RUNX1T1 WILD-TYPE" "RUNX1T1 WILD-TYPE" 
       TCGA-IB-A5SO        TCGA-IB-A5SP        TCGA-IB-A5SQ        TCGA-IB-A5SS 
"RUNX1T1 WILD-TYPE" "RUNX1T1 WILD-TYPE" "RUNX1T1 WILD-TYPE" "RUNX1T1 WILD-TYPE" 
       TCGA-IB-A5ST        TCGA-IB-A6UG        TCGA-LB-A7SX        TCGA-OE-A75W 
"RUNX1T1 WILD-TYPE" "RUNX1T1 WILD-TYPE" "RUNX1T1 WILD-TYPE" "RUNX1T1 WILD-TYPE" 
       TCGA-PZ-A5RE        TCGA-Q3-A5QY        TCGA-US-A779        TCGA-US-A77E 
  "RUNX1T1 MUTATED" "RUNX1T1 WILD-TYPE" "RUNX1T1 WILD-TYPE" "RUNX1T1 WILD-TYPE" 
       TCGA-US-A77J 
"RUNX1T1 WILD-TYPE" 
       TCGA-F2-6879        TCGA-F2-6880        TCGA-F2-7273        TCGA-F2-7276 
  "RUNX1T1 MUTATED" "RUNX1T1 WILD-TYPE" "RUNX1T1 WILD-TYPE" "RUNX1T1 WILD-TYPE" 
       TCGA-F2-A44G        TCGA-F2-A44H        TCGA-FB-A4P5        TCGA-FB-A4P6 
"RUNX1T1 WILD-TYPE" "RUNX1T1 WILD-TYPE" "RUNX1T1 WILD-TYPE" "RUNX1T1 WILD-TYPE" 
       TCGA-FB-A545        TCGA-FB-A5VM        TCGA-FB-A78T        TCGA-FB-A7DR 
  "RUNX1T1 MUTATED" "RUNX1T1 WILD-TYPE" "RUNX1T1 WILD-TYPE" "RUNX1T1 WILD-TYPE" 
       TCGA-FZ-5920        TCGA-FZ-5922        TCGA-FZ-5923        TCGA-H6-8124 
"RUNX1T1 WILD-TYPE" "RUNX1T1 WILD-TYPE" "RUNX1T1 WILD-TYPE" "RUNX1T1 WILD-TYPE" 
       TCGA-H6-A45N        TCGA-H8-A6C1        TCGA-HZ-7289        TCGA-HZ-7918 
  "RUNX1T1 MUTATED" "RUNX1T1 WILD-TYPE" "RUNX1T1 WILD-TYPE" "RUNX1T1 WILD-TYPE" 
       TCGA-HZ-7919        TCGA-HZ-7922        TCGA-HZ-7923        TCGA-HZ-7924 
"RUNX1T1 WILD-TYPE" "RUNX1T1 WILD-TYPE" "RUNX1T1 WILD-TYPE" "RUNX1T1 WILD-TYPE" 
       TCGA-HZ-7925        TCGA-HZ-7926        TCGA-HZ-8001        TCGA-HZ-8002 
"RUNX1T1 WILD-TYPE" "RUNX1T1 WILD-TYPE" "RUNX1T1 WILD-TYPE"   "RUNX1T1 MUTATED" 
       TCGA-HZ-8003        TCGA-HZ-8005        TCGA-HZ-8315        TCGA-HZ-8317 
"RUNX1T1 WILD-TYPE" "RUNX1T1 WILD-TYPE"   "RUNX1T1 MUTATED" "RUNX1T1 WILD-TYPE" 
       TCGA-HZ-8636        TCGA-HZ-8638        TCGA-HZ-A49G        TCGA-HZ-A49H 
"RUNX1T1 WILD-TYPE" "RUNX1T1 WILD-TYPE" "RUNX1T1 WILD-TYPE" "RUNX1T1 WILD-TYPE" 
       TCGA-HZ-A4BH        TCGA-HZ-A4BK        TCGA-IB-7644        TCGA-IB-7645 
"RUNX1T1 WILD-TYPE" "RUNX1T1 WILD-TYPE" "RUNX1T1 WILD-TYPE" "RUNX1T1 WILD-TYPE" 
       TCGA-IB-7646        TCGA-IB-7647        TCGA-IB-7649        TCGA-IB-7651 
"RUNX1T1 WILD-TYPE" "RUNX1T1 WILD-TYPE" "RUNX1T1 WILD-TYPE"   "RUNX1T1 MUTATED" 
       TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-7886        TCGA-IB-7887 
"RUNX1T1 WILD-TYPE" "RUNX1T1 WILD-TYPE" "RUNX1T1 WILD-TYPE" "RUNX1T1 WILD-TYPE" 
       TCGA-IB-7888        TCGA-IB-7889        TCGA-IB-7890        TCGA-IB-7891 
"RUNX1T1 WILD-TYPE" "RUNX1T1 WILD-TYPE" "RUNX1T1 WILD-TYPE" "RUNX1T1 WILD-TYPE" 
       TCGA-IB-7893        TCGA-IB-7897        TCGA-IB-8126        TCGA-IB-8127 
"RUNX1T1 WILD-TYPE" "RUNX1T1 WILD-TYPE" "RUNX1T1 WILD-TYPE" "RUNX1T1 WILD-TYPE" 
       TCGA-IB-A5SO        TCGA-IB-A5SP        TCGA-IB-A5SQ        TCGA-IB-A5SS 
"RUNX1T1 WILD-TYPE" "RUNX1T1 WILD-TYPE" "RUNX1T1 WILD-TYPE" "RUNX1T1 WILD-TYPE" 
       TCGA-IB-A5ST        TCGA-IB-A6UG        TCGA-LB-A7SX        TCGA-OE-A75W 
"RUNX1T1 WILD-TYPE" "RUNX1T1 WILD-TYPE" "RUNX1T1 WILD-TYPE" "RUNX1T1 WILD-TYPE" 
       TCGA-PZ-A5RE        TCGA-Q3-A5QY        TCGA-US-A779        TCGA-US-A77E 
  "RUNX1T1 MUTATED" "RUNX1T1 WILD-TYPE" "RUNX1T1 WILD-TYPE" "RUNX1T1 WILD-TYPE" 
       TCGA-US-A77J 
"RUNX1T1 WILD-TYPE" 
[1] "hr=" "1.3"
D268V2, continuous
                   vv
clus                STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  RUNX1T1 MUTATED          0        0         1         6         0        0
  RUNX1T1 WILD-TYPE        1        4        10        45         2        3
D268V3, multiclass
                   vv
clus                T1+T2 T3+T4
  RUNX1T1 MUTATED       0     7
  RUNX1T1 WILD-TYPE     6    59
D268V4, multiclass
       clus
vv      RUNX1T1 MUTATED RUNX1T1 WILD-TYPE
  T1+T2               0                 6
  T3+T4               7                59
D268V5, binary
                   cls
clus                 0  1
  RUNX1T1 MUTATED    1  6
  RUNX1T1 WILD-TYPE 16 48
[1] "tbl2"
                   cls
clus                [,1] [,2]
  RUNX1T1 MUTATED      1    6
  RUNX1T1 WILD-TYPE   16   48
   clus
vv  RUNX1T1 MUTATED RUNX1T1 WILD-TYPE
  0               1                16
  1               6                48
                   vv
clus                M0 M1 MX
  RUNX1T1 MUTATED    3  0  4
  RUNX1T1 WILD-TYPE 36  3 26
D268V6, multiclass
    clus
vv   RUNX1T1 MUTATED RUNX1T1 WILD-TYPE
  M0               3                36
  M1               0                 3
  MX               4                26
D268V7, binary
                   cls
clus                 0  1
  RUNX1T1 MUTATED    5  2
  RUNX1T1 WILD-TYPE 31 34
[1] "tbl2"
                   cls
clus                [,1] [,2]
  RUNX1T1 MUTATED      5    2
  RUNX1T1 WILD-TYPE   31   34
        clus
vv       RUNX1T1 MUTATED RUNX1T1 WILD-TYPE
  FEMALE               5                31
  MALE                 2                34
                   vv
clus                PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  RUNX1T1 MUTATED                                     5
  RUNX1T1 WILD-TYPE                                  60
                   vv
clus                PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  RUNX1T1 MUTATED                                       1
  RUNX1T1 WILD-TYPE                                     3
                   vv
clus                PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  RUNX1T1 MUTATED                                                  0
  RUNX1T1 WILD-TYPE                                                2
D268V8, multiclass
                                                  clus
vv                                                 RUNX1T1 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                            5
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                          1
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA               0
                                                  clus
vv                                                 RUNX1T1 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                             60
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                            3
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                 2
D268V9, continuous
[1] "Remove cluster labels:" "RUNX1T1 MUTATED"       
clus
  RUNX1T1 MUTATED RUNX1T1 WILD-TYPE 
                2                20 
       TCGA-F2-6880        TCGA-FB-A4P5        TCGA-FB-A4P6        TCGA-FB-A5VM 
"RUNX1T1 WILD-TYPE" "RUNX1T1 WILD-TYPE" "RUNX1T1 WILD-TYPE" "RUNX1T1 WILD-TYPE" 
       TCGA-FB-A78T        TCGA-FB-A7DR        TCGA-H6-8124        TCGA-H8-A6C1 
"RUNX1T1 WILD-TYPE" "RUNX1T1 WILD-TYPE" "RUNX1T1 WILD-TYPE" "RUNX1T1 WILD-TYPE" 
       TCGA-IB-7644        TCGA-IB-7649        TCGA-IB-7885        TCGA-IB-7886 
"RUNX1T1 WILD-TYPE" "RUNX1T1 WILD-TYPE" "RUNX1T1 WILD-TYPE" "RUNX1T1 WILD-TYPE" 
       TCGA-IB-7887        TCGA-IB-7891        TCGA-IB-8126        TCGA-IB-8127 
"RUNX1T1 WILD-TYPE" "RUNX1T1 WILD-TYPE" "RUNX1T1 WILD-TYPE" "RUNX1T1 WILD-TYPE" 
       TCGA-IB-A5SS        TCGA-IB-A6UG        TCGA-LB-A7SX        TCGA-OE-A75W 
"RUNX1T1 WILD-TYPE" "RUNX1T1 WILD-TYPE" "RUNX1T1 WILD-TYPE" "RUNX1T1 WILD-TYPE" 
D268V10, continuous
[1] "Remove cluster labels:" "RUNX1T1 MUTATED"       
clus
  RUNX1T1 MUTATED RUNX1T1 WILD-TYPE 
                1                18 
       TCGA-FB-A4P5        TCGA-FB-A4P6        TCGA-FB-A5VM        TCGA-FB-A78T 
"RUNX1T1 WILD-TYPE" "RUNX1T1 WILD-TYPE" "RUNX1T1 WILD-TYPE" "RUNX1T1 WILD-TYPE" 
       TCGA-FB-A7DR        TCGA-H6-8124        TCGA-H8-A6C1        TCGA-IB-7644 
"RUNX1T1 WILD-TYPE" "RUNX1T1 WILD-TYPE" "RUNX1T1 WILD-TYPE" "RUNX1T1 WILD-TYPE" 
       TCGA-IB-7649        TCGA-IB-7885        TCGA-IB-7886        TCGA-IB-7891 
"RUNX1T1 WILD-TYPE" "RUNX1T1 WILD-TYPE" "RUNX1T1 WILD-TYPE" "RUNX1T1 WILD-TYPE" 
       TCGA-IB-8126        TCGA-IB-8127        TCGA-IB-A5SS        TCGA-IB-A6UG 
"RUNX1T1 WILD-TYPE" "RUNX1T1 WILD-TYPE" "RUNX1T1 WILD-TYPE" "RUNX1T1 WILD-TYPE" 
       TCGA-LB-A7SX        TCGA-OE-A75W 
"RUNX1T1 WILD-TYPE" "RUNX1T1 WILD-TYPE" 
                   vv
clus                R0 R1 RX
  RUNX1T1 MUTATED    3  1  0
  RUNX1T1 WILD-TYPE 39 23  2
D268V11, multiclass
    clus
vv   RUNX1T1 MUTATED RUNX1T1 WILD-TYPE
  R0               3                39
  R1               1                23
  RX               0                 2
D268V12, continuous

Clustering(269) Variable = CCDC130 MUTATION ANALYSIS
D269V1, survival
                   sevent
clus2                0  1
  CCDC130 MUTATED    2  3
  CCDC130 WILD-TYPE 38 26
  CCDC130 MUTATED CCDC130 WILD-TYPE 
                5                64 
  CCDC130 MUTATED CCDC130 WILD-TYPE 
                3                26 
$`CCDC130 MUTATED`
TCGA-HZ-8005 TCGA-HZ-8317 TCGA-HZ-8638 TCGA-IB-7646 TCGA-IB-7651 
        3.95         0.53         2.99         4.77        19.82 

$`CCDC130 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P5 TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR 
        0.13        11.93        12.66         2.47         0.03         5.46 
TCGA-FZ-5920 TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 
        2.01        36.20        20.81        12.89         7.66        13.02 
TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 
        7.89         0.92         0.66         0.13         0.26        12.13 
TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8315 
       11.87         0.26         0.62         0.79         0.69         0.92 
TCGA-HZ-8636 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 
        0.16         0.76         0.95         6.38         1.51        11.41 
TCGA-IB-7645 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7886 
       49.38        21.90        15.35        15.65        27.98         4.04 
TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-7893 
        3.62        43.79        15.81        19.66        16.04         3.85 
TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ 
       15.98         0.56        17.16        10.82         9.86         7.20 
TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W TCGA-PZ-A5RE 
       15.12         0.26         1.35         4.18         3.62         8.12 
TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
       13.68        16.80        14.14        18.67 

  CCDC130 MUTATED CCDC130 WILD-TYPE 
             0.53              0.03 
  CCDC130 MUTATED CCDC130 WILD-TYPE 
            19.82             49.38 
  CCDC130 MUTATED CCDC130 WILD-TYPE 
            3.950             8.005 
[1] "0.5 - 19.8 (4.0)" "0.0 - 49.4 (8.0)"
       TCGA-F2-6879        TCGA-F2-6880        TCGA-F2-7273        TCGA-F2-7276 
"CCDC130 WILD-TYPE" "CCDC130 WILD-TYPE" "CCDC130 WILD-TYPE" "CCDC130 WILD-TYPE" 
       TCGA-F2-A44G        TCGA-F2-A44H        TCGA-FB-A4P5        TCGA-FB-A4P6 
"CCDC130 WILD-TYPE" "CCDC130 WILD-TYPE" "CCDC130 WILD-TYPE" "CCDC130 WILD-TYPE" 
       TCGA-FB-A545        TCGA-FB-A5VM        TCGA-FB-A78T        TCGA-FB-A7DR 
"CCDC130 WILD-TYPE" "CCDC130 WILD-TYPE" "CCDC130 WILD-TYPE" "CCDC130 WILD-TYPE" 
       TCGA-FZ-5920        TCGA-FZ-5922        TCGA-FZ-5923        TCGA-H6-8124 
"CCDC130 WILD-TYPE" "CCDC130 WILD-TYPE" "CCDC130 WILD-TYPE" "CCDC130 WILD-TYPE" 
       TCGA-H6-A45N        TCGA-H8-A6C1        TCGA-HZ-7289        TCGA-HZ-7918 
"CCDC130 WILD-TYPE" "CCDC130 WILD-TYPE" "CCDC130 WILD-TYPE" "CCDC130 WILD-TYPE" 
       TCGA-HZ-7919        TCGA-HZ-7922        TCGA-HZ-7923        TCGA-HZ-7924 
"CCDC130 WILD-TYPE" "CCDC130 WILD-TYPE" "CCDC130 WILD-TYPE" "CCDC130 WILD-TYPE" 
       TCGA-HZ-7925        TCGA-HZ-7926        TCGA-HZ-8001        TCGA-HZ-8002 
"CCDC130 WILD-TYPE" "CCDC130 WILD-TYPE" "CCDC130 WILD-TYPE" "CCDC130 WILD-TYPE" 
       TCGA-HZ-8003        TCGA-HZ-8005        TCGA-HZ-8315        TCGA-HZ-8317 
"CCDC130 WILD-TYPE"   "CCDC130 MUTATED" "CCDC130 WILD-TYPE"   "CCDC130 MUTATED" 
       TCGA-HZ-8636        TCGA-HZ-8638        TCGA-HZ-A49G        TCGA-HZ-A49H 
"CCDC130 WILD-TYPE"   "CCDC130 MUTATED" "CCDC130 WILD-TYPE" "CCDC130 WILD-TYPE" 
       TCGA-HZ-A4BH        TCGA-HZ-A4BK        TCGA-IB-7644        TCGA-IB-7645 
"CCDC130 WILD-TYPE" "CCDC130 WILD-TYPE" "CCDC130 WILD-TYPE" "CCDC130 WILD-TYPE" 
       TCGA-IB-7646        TCGA-IB-7647        TCGA-IB-7649        TCGA-IB-7651 
  "CCDC130 MUTATED" "CCDC130 WILD-TYPE" "CCDC130 WILD-TYPE"   "CCDC130 MUTATED" 
       TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-7886        TCGA-IB-7887 
"CCDC130 WILD-TYPE" "CCDC130 WILD-TYPE" "CCDC130 WILD-TYPE" "CCDC130 WILD-TYPE" 
       TCGA-IB-7888        TCGA-IB-7889        TCGA-IB-7890        TCGA-IB-7891 
"CCDC130 WILD-TYPE" "CCDC130 WILD-TYPE" "CCDC130 WILD-TYPE" "CCDC130 WILD-TYPE" 
       TCGA-IB-7893        TCGA-IB-7897        TCGA-IB-8126        TCGA-IB-8127 
"CCDC130 WILD-TYPE" "CCDC130 WILD-TYPE" "CCDC130 WILD-TYPE" "CCDC130 WILD-TYPE" 
       TCGA-IB-A5SO        TCGA-IB-A5SP        TCGA-IB-A5SQ        TCGA-IB-A5SS 
"CCDC130 WILD-TYPE" "CCDC130 WILD-TYPE" "CCDC130 WILD-TYPE" "CCDC130 WILD-TYPE" 
       TCGA-IB-A5ST        TCGA-IB-A6UG        TCGA-LB-A7SX        TCGA-OE-A75W 
"CCDC130 WILD-TYPE" "CCDC130 WILD-TYPE" "CCDC130 WILD-TYPE" "CCDC130 WILD-TYPE" 
       TCGA-PZ-A5RE        TCGA-Q3-A5QY        TCGA-US-A779        TCGA-US-A77E 
"CCDC130 WILD-TYPE" "CCDC130 WILD-TYPE" "CCDC130 WILD-TYPE" "CCDC130 WILD-TYPE" 
       TCGA-US-A77J 
"CCDC130 WILD-TYPE" 
       TCGA-F2-6879        TCGA-F2-6880        TCGA-F2-7273        TCGA-F2-7276 
"CCDC130 WILD-TYPE" "CCDC130 WILD-TYPE" "CCDC130 WILD-TYPE" "CCDC130 WILD-TYPE" 
       TCGA-F2-A44G        TCGA-F2-A44H        TCGA-FB-A4P5        TCGA-FB-A4P6 
"CCDC130 WILD-TYPE" "CCDC130 WILD-TYPE" "CCDC130 WILD-TYPE" "CCDC130 WILD-TYPE" 
       TCGA-FB-A545        TCGA-FB-A5VM        TCGA-FB-A78T        TCGA-FB-A7DR 
"CCDC130 WILD-TYPE" "CCDC130 WILD-TYPE" "CCDC130 WILD-TYPE" "CCDC130 WILD-TYPE" 
       TCGA-FZ-5920        TCGA-FZ-5922        TCGA-FZ-5923        TCGA-H6-8124 
"CCDC130 WILD-TYPE" "CCDC130 WILD-TYPE" "CCDC130 WILD-TYPE" "CCDC130 WILD-TYPE" 
       TCGA-H6-A45N        TCGA-H8-A6C1        TCGA-HZ-7289        TCGA-HZ-7918 
"CCDC130 WILD-TYPE" "CCDC130 WILD-TYPE" "CCDC130 WILD-TYPE" "CCDC130 WILD-TYPE" 
       TCGA-HZ-7919        TCGA-HZ-7922        TCGA-HZ-7923        TCGA-HZ-7924 
"CCDC130 WILD-TYPE" "CCDC130 WILD-TYPE" "CCDC130 WILD-TYPE" "CCDC130 WILD-TYPE" 
       TCGA-HZ-7925        TCGA-HZ-7926        TCGA-HZ-8001        TCGA-HZ-8002 
"CCDC130 WILD-TYPE" "CCDC130 WILD-TYPE" "CCDC130 WILD-TYPE" "CCDC130 WILD-TYPE" 
       TCGA-HZ-8003        TCGA-HZ-8005        TCGA-HZ-8315        TCGA-HZ-8317 
"CCDC130 WILD-TYPE"   "CCDC130 MUTATED" "CCDC130 WILD-TYPE"   "CCDC130 MUTATED" 
       TCGA-HZ-8636        TCGA-HZ-8638        TCGA-HZ-A49G        TCGA-HZ-A49H 
"CCDC130 WILD-TYPE"   "CCDC130 MUTATED" "CCDC130 WILD-TYPE" "CCDC130 WILD-TYPE" 
       TCGA-HZ-A4BH        TCGA-HZ-A4BK        TCGA-IB-7644        TCGA-IB-7645 
"CCDC130 WILD-TYPE" "CCDC130 WILD-TYPE" "CCDC130 WILD-TYPE" "CCDC130 WILD-TYPE" 
       TCGA-IB-7646        TCGA-IB-7647        TCGA-IB-7649        TCGA-IB-7651 
  "CCDC130 MUTATED" "CCDC130 WILD-TYPE" "CCDC130 WILD-TYPE"   "CCDC130 MUTATED" 
       TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-7886        TCGA-IB-7887 
"CCDC130 WILD-TYPE" "CCDC130 WILD-TYPE" "CCDC130 WILD-TYPE" "CCDC130 WILD-TYPE" 
       TCGA-IB-7888        TCGA-IB-7889        TCGA-IB-7890        TCGA-IB-7891 
"CCDC130 WILD-TYPE" "CCDC130 WILD-TYPE" "CCDC130 WILD-TYPE" "CCDC130 WILD-TYPE" 
       TCGA-IB-7893        TCGA-IB-7897        TCGA-IB-8126        TCGA-IB-8127 
"CCDC130 WILD-TYPE" "CCDC130 WILD-TYPE" "CCDC130 WILD-TYPE" "CCDC130 WILD-TYPE" 
       TCGA-IB-A5SO        TCGA-IB-A5SP        TCGA-IB-A5SQ        TCGA-IB-A5SS 
"CCDC130 WILD-TYPE" "CCDC130 WILD-TYPE" "CCDC130 WILD-TYPE" "CCDC130 WILD-TYPE" 
       TCGA-IB-A5ST        TCGA-IB-A6UG        TCGA-LB-A7SX        TCGA-OE-A75W 
"CCDC130 WILD-TYPE" "CCDC130 WILD-TYPE" "CCDC130 WILD-TYPE" "CCDC130 WILD-TYPE" 
       TCGA-PZ-A5RE        TCGA-Q3-A5QY        TCGA-US-A779        TCGA-US-A77E 
"CCDC130 WILD-TYPE" "CCDC130 WILD-TYPE" "CCDC130 WILD-TYPE" "CCDC130 WILD-TYPE" 
       TCGA-US-A77J 
"CCDC130 WILD-TYPE" 
       TCGA-F2-6879        TCGA-F2-6880        TCGA-F2-7273        TCGA-F2-7276 
"CCDC130 WILD-TYPE" "CCDC130 WILD-TYPE" "CCDC130 WILD-TYPE" "CCDC130 WILD-TYPE" 
       TCGA-F2-A44G        TCGA-F2-A44H        TCGA-FB-A4P5        TCGA-FB-A4P6 
"CCDC130 WILD-TYPE" "CCDC130 WILD-TYPE" "CCDC130 WILD-TYPE" "CCDC130 WILD-TYPE" 
       TCGA-FB-A545        TCGA-FB-A5VM        TCGA-FB-A78T        TCGA-FB-A7DR 
"CCDC130 WILD-TYPE" "CCDC130 WILD-TYPE" "CCDC130 WILD-TYPE" "CCDC130 WILD-TYPE" 
       TCGA-FZ-5920        TCGA-FZ-5922        TCGA-FZ-5923        TCGA-H6-8124 
"CCDC130 WILD-TYPE" "CCDC130 WILD-TYPE" "CCDC130 WILD-TYPE" "CCDC130 WILD-TYPE" 
       TCGA-H6-A45N        TCGA-H8-A6C1        TCGA-HZ-7289        TCGA-HZ-7918 
"CCDC130 WILD-TYPE" "CCDC130 WILD-TYPE" "CCDC130 WILD-TYPE" "CCDC130 WILD-TYPE" 
       TCGA-HZ-7919        TCGA-HZ-7922        TCGA-HZ-7923        TCGA-HZ-7924 
"CCDC130 WILD-TYPE" "CCDC130 WILD-TYPE" "CCDC130 WILD-TYPE" "CCDC130 WILD-TYPE" 
       TCGA-HZ-7925        TCGA-HZ-7926        TCGA-HZ-8001        TCGA-HZ-8002 
"CCDC130 WILD-TYPE" "CCDC130 WILD-TYPE" "CCDC130 WILD-TYPE" "CCDC130 WILD-TYPE" 
       TCGA-HZ-8003        TCGA-HZ-8005        TCGA-HZ-8315        TCGA-HZ-8317 
"CCDC130 WILD-TYPE"   "CCDC130 MUTATED" "CCDC130 WILD-TYPE"   "CCDC130 MUTATED" 
       TCGA-HZ-8636        TCGA-HZ-8638        TCGA-HZ-A49G        TCGA-HZ-A49H 
"CCDC130 WILD-TYPE"   "CCDC130 MUTATED" "CCDC130 WILD-TYPE" "CCDC130 WILD-TYPE" 
       TCGA-HZ-A4BH        TCGA-HZ-A4BK        TCGA-IB-7644        TCGA-IB-7645 
"CCDC130 WILD-TYPE" "CCDC130 WILD-TYPE" "CCDC130 WILD-TYPE" "CCDC130 WILD-TYPE" 
       TCGA-IB-7646        TCGA-IB-7647        TCGA-IB-7649        TCGA-IB-7651 
  "CCDC130 MUTATED" "CCDC130 WILD-TYPE" "CCDC130 WILD-TYPE"   "CCDC130 MUTATED" 
       TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-7886        TCGA-IB-7887 
"CCDC130 WILD-TYPE" "CCDC130 WILD-TYPE" "CCDC130 WILD-TYPE" "CCDC130 WILD-TYPE" 
       TCGA-IB-7888        TCGA-IB-7889        TCGA-IB-7890        TCGA-IB-7891 
"CCDC130 WILD-TYPE" "CCDC130 WILD-TYPE" "CCDC130 WILD-TYPE" "CCDC130 WILD-TYPE" 
       TCGA-IB-7893        TCGA-IB-7897        TCGA-IB-8126        TCGA-IB-8127 
"CCDC130 WILD-TYPE" "CCDC130 WILD-TYPE" "CCDC130 WILD-TYPE" "CCDC130 WILD-TYPE" 
       TCGA-IB-A5SO        TCGA-IB-A5SP        TCGA-IB-A5SQ        TCGA-IB-A5SS 
"CCDC130 WILD-TYPE" "CCDC130 WILD-TYPE" "CCDC130 WILD-TYPE" "CCDC130 WILD-TYPE" 
       TCGA-IB-A5ST        TCGA-IB-A6UG        TCGA-LB-A7SX        TCGA-OE-A75W 
"CCDC130 WILD-TYPE" "CCDC130 WILD-TYPE" "CCDC130 WILD-TYPE" "CCDC130 WILD-TYPE" 
       TCGA-PZ-A5RE        TCGA-Q3-A5QY        TCGA-US-A779        TCGA-US-A77E 
"CCDC130 WILD-TYPE" "CCDC130 WILD-TYPE" "CCDC130 WILD-TYPE" "CCDC130 WILD-TYPE" 
       TCGA-US-A77J 
"CCDC130 WILD-TYPE" 
[1] "hr=" "2.2"
D269V2, continuous
                   vv
clus                STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  CCDC130 MUTATED          1        0         0         4         0        0
  CCDC130 WILD-TYPE        0        4        11        47         2        3
D269V3, multiclass
                   vv
clus                T1+T2 T3+T4
  CCDC130 MUTATED       1     4
  CCDC130 WILD-TYPE     5    62
D269V4, multiclass
       clus
vv      CCDC130 MUTATED CCDC130 WILD-TYPE
  T1+T2               1                 5
  T3+T4               4                62
D269V5, binary
                   cls
clus                 0  1
  CCDC130 MUTATED    1  4
  CCDC130 WILD-TYPE 16 50
[1] "tbl2"
                   cls
clus                [,1] [,2]
  CCDC130 MUTATED      1    4
  CCDC130 WILD-TYPE   16   50
   clus
vv  CCDC130 MUTATED CCDC130 WILD-TYPE
  0               1                16
  1               4                50
                   vv
clus                M0 M1 MX
  CCDC130 MUTATED    2  0  3
  CCDC130 WILD-TYPE 37  3 27
D269V6, multiclass
    clus
vv   CCDC130 MUTATED CCDC130 WILD-TYPE
  M0               2                37
  M1               0                 3
  MX               3                27
D269V7, binary
                   cls
clus                 0  1
  CCDC130 MUTATED    3  2
  CCDC130 WILD-TYPE 33 34
[1] "tbl2"
                   cls
clus                [,1] [,2]
  CCDC130 MUTATED      3    2
  CCDC130 WILD-TYPE   33   34
        clus
vv       CCDC130 MUTATED CCDC130 WILD-TYPE
  FEMALE               3                33
  MALE                 2                34
                   vv
clus                PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  CCDC130 MUTATED                                     4
  CCDC130 WILD-TYPE                                  61
                   vv
clus                PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  CCDC130 MUTATED                                       0
  CCDC130 WILD-TYPE                                     4
                   vv
clus                PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  CCDC130 MUTATED                                                  1
  CCDC130 WILD-TYPE                                                1
D269V8, multiclass
                                                  clus
vv                                                 CCDC130 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                            4
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                          0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA               1
                                                  clus
vv                                                 CCDC130 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                             61
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                            4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                 1
D269V9, continuous
[1] "Remove cluster labels:" "CCDC130 MUTATED"       
clus
  CCDC130 MUTATED CCDC130 WILD-TYPE 
                1                21 
       TCGA-F2-6880        TCGA-FB-A4P5        TCGA-FB-A4P6        TCGA-FB-A5VM 
"CCDC130 WILD-TYPE" "CCDC130 WILD-TYPE" "CCDC130 WILD-TYPE" "CCDC130 WILD-TYPE" 
       TCGA-FB-A78T        TCGA-FB-A7DR        TCGA-H6-8124        TCGA-H6-A45N 
"CCDC130 WILD-TYPE" "CCDC130 WILD-TYPE" "CCDC130 WILD-TYPE" "CCDC130 WILD-TYPE" 
       TCGA-H8-A6C1        TCGA-IB-7644        TCGA-IB-7649        TCGA-IB-7885 
"CCDC130 WILD-TYPE" "CCDC130 WILD-TYPE" "CCDC130 WILD-TYPE" "CCDC130 WILD-TYPE" 
       TCGA-IB-7886        TCGA-IB-7887        TCGA-IB-7891        TCGA-IB-8126 
"CCDC130 WILD-TYPE" "CCDC130 WILD-TYPE" "CCDC130 WILD-TYPE" "CCDC130 WILD-TYPE" 
       TCGA-IB-8127        TCGA-IB-A5SS        TCGA-IB-A6UG        TCGA-LB-A7SX 
"CCDC130 WILD-TYPE" "CCDC130 WILD-TYPE" "CCDC130 WILD-TYPE" "CCDC130 WILD-TYPE" 
       TCGA-OE-A75W 
"CCDC130 WILD-TYPE" 
D269V10, continuous
[1] "Remove cluster labels:" "CCDC130 MUTATED"       
clus
  CCDC130 MUTATED CCDC130 WILD-TYPE 
                1                18 
       TCGA-FB-A4P5        TCGA-FB-A4P6        TCGA-FB-A5VM        TCGA-FB-A78T 
"CCDC130 WILD-TYPE" "CCDC130 WILD-TYPE" "CCDC130 WILD-TYPE" "CCDC130 WILD-TYPE" 
       TCGA-FB-A7DR        TCGA-H6-8124        TCGA-H8-A6C1        TCGA-IB-7644 
"CCDC130 WILD-TYPE" "CCDC130 WILD-TYPE" "CCDC130 WILD-TYPE" "CCDC130 WILD-TYPE" 
       TCGA-IB-7649        TCGA-IB-7885        TCGA-IB-7886        TCGA-IB-7891 
"CCDC130 WILD-TYPE" "CCDC130 WILD-TYPE" "CCDC130 WILD-TYPE" "CCDC130 WILD-TYPE" 
       TCGA-IB-8126        TCGA-IB-8127        TCGA-IB-A5SS        TCGA-IB-A6UG 
"CCDC130 WILD-TYPE" "CCDC130 WILD-TYPE" "CCDC130 WILD-TYPE" "CCDC130 WILD-TYPE" 
       TCGA-LB-A7SX        TCGA-OE-A75W 
"CCDC130 WILD-TYPE" "CCDC130 WILD-TYPE" 
                   vv
clus                R0 R1 RX
  CCDC130 MUTATED    2  3  0
  CCDC130 WILD-TYPE 40 21  2
D269V11, multiclass
    clus
vv   CCDC130 MUTATED CCDC130 WILD-TYPE
  R0               2                40
  R1               3                21
  RX               0                 2
D269V12, continuous

Clustering(270) Variable = ADAL MUTATION ANALYSIS
D270V1, survival
                sevent
clus2             0  1
  ADAL MUTATED    2  1
  ADAL WILD-TYPE 38 28
  ADAL MUTATED ADAL WILD-TYPE 
             3             66 
  ADAL MUTATED ADAL WILD-TYPE 
             1             28 
$`ADAL MUTATED`
TCGA-FZ-5922 TCGA-HZ-8003 TCGA-HZ-A49G 
       36.20         0.69         0.76 

$`ADAL WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P5 TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR 
        0.13        11.93        12.66         2.47         0.03         5.46 
TCGA-FZ-5920 TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7289 
        2.01        20.81        12.89         7.66        13.02         7.89 
TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 
        0.92         0.66         0.13         0.26        12.13        11.87 
TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 
        0.26         0.62         0.79         3.95         0.92         0.53 
TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 
        0.16         2.99         0.95         6.38         1.51        11.41 
TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7651 TCGA-IB-7652 
       49.38         4.77        21.90        15.35        19.82        15.65 
TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 
       27.98         4.04         3.62        43.79        15.81        19.66 
TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO 
       16.04         3.85        15.98         0.56        17.16        10.82 
TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX 
        9.86         7.20        15.12         0.26         1.35         4.18 
TCGA-OE-A75W TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
        3.62         8.12        13.68        16.80        14.14        18.67 

  ADAL MUTATED ADAL WILD-TYPE 
          0.69           0.03 
  ADAL MUTATED ADAL WILD-TYPE 
         36.20          49.38 
  ADAL MUTATED ADAL WILD-TYPE 
         0.760          7.775 
[1] "0.7 - 36.2 (0.8)" "0.0 - 49.4 (7.8)"
    TCGA-F2-6879     TCGA-F2-6880     TCGA-F2-7273     TCGA-F2-7276 
"ADAL WILD-TYPE" "ADAL WILD-TYPE" "ADAL WILD-TYPE" "ADAL WILD-TYPE" 
    TCGA-F2-A44G     TCGA-F2-A44H     TCGA-FB-A4P5     TCGA-FB-A4P6 
"ADAL WILD-TYPE" "ADAL WILD-TYPE" "ADAL WILD-TYPE" "ADAL WILD-TYPE" 
    TCGA-FB-A545     TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-FB-A7DR 
"ADAL WILD-TYPE" "ADAL WILD-TYPE" "ADAL WILD-TYPE" "ADAL WILD-TYPE" 
    TCGA-FZ-5920     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-H6-8124 
"ADAL WILD-TYPE"   "ADAL MUTATED" "ADAL WILD-TYPE" "ADAL WILD-TYPE" 
    TCGA-H6-A45N     TCGA-H8-A6C1     TCGA-HZ-7289     TCGA-HZ-7918 
"ADAL WILD-TYPE" "ADAL WILD-TYPE" "ADAL WILD-TYPE" "ADAL WILD-TYPE" 
    TCGA-HZ-7919     TCGA-HZ-7922     TCGA-HZ-7923     TCGA-HZ-7924 
"ADAL WILD-TYPE" "ADAL WILD-TYPE" "ADAL WILD-TYPE" "ADAL WILD-TYPE" 
    TCGA-HZ-7925     TCGA-HZ-7926     TCGA-HZ-8001     TCGA-HZ-8002 
"ADAL WILD-TYPE" "ADAL WILD-TYPE" "ADAL WILD-TYPE" "ADAL WILD-TYPE" 
    TCGA-HZ-8003     TCGA-HZ-8005     TCGA-HZ-8315     TCGA-HZ-8317 
  "ADAL MUTATED" "ADAL WILD-TYPE" "ADAL WILD-TYPE" "ADAL WILD-TYPE" 
    TCGA-HZ-8636     TCGA-HZ-8638     TCGA-HZ-A49G     TCGA-HZ-A49H 
"ADAL WILD-TYPE" "ADAL WILD-TYPE"   "ADAL MUTATED" "ADAL WILD-TYPE" 
    TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-IB-7644     TCGA-IB-7645 
"ADAL WILD-TYPE" "ADAL WILD-TYPE" "ADAL WILD-TYPE" "ADAL WILD-TYPE" 
    TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7651 
"ADAL WILD-TYPE" "ADAL WILD-TYPE" "ADAL WILD-TYPE" "ADAL WILD-TYPE" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887 
"ADAL WILD-TYPE" "ADAL WILD-TYPE" "ADAL WILD-TYPE" "ADAL WILD-TYPE" 
    TCGA-IB-7888     TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891 
"ADAL WILD-TYPE" "ADAL WILD-TYPE" "ADAL WILD-TYPE" "ADAL WILD-TYPE" 
    TCGA-IB-7893     TCGA-IB-7897     TCGA-IB-8126     TCGA-IB-8127 
"ADAL WILD-TYPE" "ADAL WILD-TYPE" "ADAL WILD-TYPE" "ADAL WILD-TYPE" 
    TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS 
"ADAL WILD-TYPE" "ADAL WILD-TYPE" "ADAL WILD-TYPE" "ADAL WILD-TYPE" 
    TCGA-IB-A5ST     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
"ADAL WILD-TYPE" "ADAL WILD-TYPE" "ADAL WILD-TYPE" "ADAL WILD-TYPE" 
    TCGA-PZ-A5RE     TCGA-Q3-A5QY     TCGA-US-A779     TCGA-US-A77E 
"ADAL WILD-TYPE" "ADAL WILD-TYPE" "ADAL WILD-TYPE" "ADAL WILD-TYPE" 
    TCGA-US-A77J 
"ADAL WILD-TYPE" 
    TCGA-F2-6879     TCGA-F2-6880     TCGA-F2-7273     TCGA-F2-7276 
"ADAL WILD-TYPE" "ADAL WILD-TYPE" "ADAL WILD-TYPE" "ADAL WILD-TYPE" 
    TCGA-F2-A44G     TCGA-F2-A44H     TCGA-FB-A4P5     TCGA-FB-A4P6 
"ADAL WILD-TYPE" "ADAL WILD-TYPE" "ADAL WILD-TYPE" "ADAL WILD-TYPE" 
    TCGA-FB-A545     TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-FB-A7DR 
"ADAL WILD-TYPE" "ADAL WILD-TYPE" "ADAL WILD-TYPE" "ADAL WILD-TYPE" 
    TCGA-FZ-5920     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-H6-8124 
"ADAL WILD-TYPE"   "ADAL MUTATED" "ADAL WILD-TYPE" "ADAL WILD-TYPE" 
    TCGA-H6-A45N     TCGA-H8-A6C1     TCGA-HZ-7289     TCGA-HZ-7918 
"ADAL WILD-TYPE" "ADAL WILD-TYPE" "ADAL WILD-TYPE" "ADAL WILD-TYPE" 
    TCGA-HZ-7919     TCGA-HZ-7922     TCGA-HZ-7923     TCGA-HZ-7924 
"ADAL WILD-TYPE" "ADAL WILD-TYPE" "ADAL WILD-TYPE" "ADAL WILD-TYPE" 
    TCGA-HZ-7925     TCGA-HZ-7926     TCGA-HZ-8001     TCGA-HZ-8002 
"ADAL WILD-TYPE" "ADAL WILD-TYPE" "ADAL WILD-TYPE" "ADAL WILD-TYPE" 
    TCGA-HZ-8003     TCGA-HZ-8005     TCGA-HZ-8315     TCGA-HZ-8317 
  "ADAL MUTATED" "ADAL WILD-TYPE" "ADAL WILD-TYPE" "ADAL WILD-TYPE" 
    TCGA-HZ-8636     TCGA-HZ-8638     TCGA-HZ-A49G     TCGA-HZ-A49H 
"ADAL WILD-TYPE" "ADAL WILD-TYPE"   "ADAL MUTATED" "ADAL WILD-TYPE" 
    TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-IB-7644     TCGA-IB-7645 
"ADAL WILD-TYPE" "ADAL WILD-TYPE" "ADAL WILD-TYPE" "ADAL WILD-TYPE" 
    TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7651 
"ADAL WILD-TYPE" "ADAL WILD-TYPE" "ADAL WILD-TYPE" "ADAL WILD-TYPE" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887 
"ADAL WILD-TYPE" "ADAL WILD-TYPE" "ADAL WILD-TYPE" "ADAL WILD-TYPE" 
    TCGA-IB-7888     TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891 
"ADAL WILD-TYPE" "ADAL WILD-TYPE" "ADAL WILD-TYPE" "ADAL WILD-TYPE" 
    TCGA-IB-7893     TCGA-IB-7897     TCGA-IB-8126     TCGA-IB-8127 
"ADAL WILD-TYPE" "ADAL WILD-TYPE" "ADAL WILD-TYPE" "ADAL WILD-TYPE" 
    TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS 
"ADAL WILD-TYPE" "ADAL WILD-TYPE" "ADAL WILD-TYPE" "ADAL WILD-TYPE" 
    TCGA-IB-A5ST     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
"ADAL WILD-TYPE" "ADAL WILD-TYPE" "ADAL WILD-TYPE" "ADAL WILD-TYPE" 
    TCGA-PZ-A5RE     TCGA-Q3-A5QY     TCGA-US-A779     TCGA-US-A77E 
"ADAL WILD-TYPE" "ADAL WILD-TYPE" "ADAL WILD-TYPE" "ADAL WILD-TYPE" 
    TCGA-US-A77J 
"ADAL WILD-TYPE" 
    TCGA-F2-6879     TCGA-F2-6880     TCGA-F2-7273     TCGA-F2-7276 
"ADAL WILD-TYPE" "ADAL WILD-TYPE" "ADAL WILD-TYPE" "ADAL WILD-TYPE" 
    TCGA-F2-A44G     TCGA-F2-A44H     TCGA-FB-A4P5     TCGA-FB-A4P6 
"ADAL WILD-TYPE" "ADAL WILD-TYPE" "ADAL WILD-TYPE" "ADAL WILD-TYPE" 
    TCGA-FB-A545     TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-FB-A7DR 
"ADAL WILD-TYPE" "ADAL WILD-TYPE" "ADAL WILD-TYPE" "ADAL WILD-TYPE" 
    TCGA-FZ-5920     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-H6-8124 
"ADAL WILD-TYPE"   "ADAL MUTATED" "ADAL WILD-TYPE" "ADAL WILD-TYPE" 
    TCGA-H6-A45N     TCGA-H8-A6C1     TCGA-HZ-7289     TCGA-HZ-7918 
"ADAL WILD-TYPE" "ADAL WILD-TYPE" "ADAL WILD-TYPE" "ADAL WILD-TYPE" 
    TCGA-HZ-7919     TCGA-HZ-7922     TCGA-HZ-7923     TCGA-HZ-7924 
"ADAL WILD-TYPE" "ADAL WILD-TYPE" "ADAL WILD-TYPE" "ADAL WILD-TYPE" 
    TCGA-HZ-7925     TCGA-HZ-7926     TCGA-HZ-8001     TCGA-HZ-8002 
"ADAL WILD-TYPE" "ADAL WILD-TYPE" "ADAL WILD-TYPE" "ADAL WILD-TYPE" 
    TCGA-HZ-8003     TCGA-HZ-8005     TCGA-HZ-8315     TCGA-HZ-8317 
  "ADAL MUTATED" "ADAL WILD-TYPE" "ADAL WILD-TYPE" "ADAL WILD-TYPE" 
    TCGA-HZ-8636     TCGA-HZ-8638     TCGA-HZ-A49G     TCGA-HZ-A49H 
"ADAL WILD-TYPE" "ADAL WILD-TYPE"   "ADAL MUTATED" "ADAL WILD-TYPE" 
    TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-IB-7644     TCGA-IB-7645 
"ADAL WILD-TYPE" "ADAL WILD-TYPE" "ADAL WILD-TYPE" "ADAL WILD-TYPE" 
    TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7651 
"ADAL WILD-TYPE" "ADAL WILD-TYPE" "ADAL WILD-TYPE" "ADAL WILD-TYPE" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887 
"ADAL WILD-TYPE" "ADAL WILD-TYPE" "ADAL WILD-TYPE" "ADAL WILD-TYPE" 
    TCGA-IB-7888     TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891 
"ADAL WILD-TYPE" "ADAL WILD-TYPE" "ADAL WILD-TYPE" "ADAL WILD-TYPE" 
    TCGA-IB-7893     TCGA-IB-7897     TCGA-IB-8126     TCGA-IB-8127 
"ADAL WILD-TYPE" "ADAL WILD-TYPE" "ADAL WILD-TYPE" "ADAL WILD-TYPE" 
    TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS 
"ADAL WILD-TYPE" "ADAL WILD-TYPE" "ADAL WILD-TYPE" "ADAL WILD-TYPE" 
    TCGA-IB-A5ST     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
"ADAL WILD-TYPE" "ADAL WILD-TYPE" "ADAL WILD-TYPE" "ADAL WILD-TYPE" 
    TCGA-PZ-A5RE     TCGA-Q3-A5QY     TCGA-US-A779     TCGA-US-A77E 
"ADAL WILD-TYPE" "ADAL WILD-TYPE" "ADAL WILD-TYPE" "ADAL WILD-TYPE" 
    TCGA-US-A77J 
"ADAL WILD-TYPE" 
[1] "hr=" "2"  
D270V2, continuous
                vv
clus             STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  ADAL MUTATED          0        0         1         2         0        0
  ADAL WILD-TYPE        1        4        10        49         2        3
D270V3, multiclass
                vv
clus             T1+T2 T3+T4
  ADAL MUTATED       1     2
  ADAL WILD-TYPE     5    64
D270V4, multiclass
       clus
vv      ADAL MUTATED ADAL WILD-TYPE
  T1+T2            1              5
  T3+T4            2             64
D270V5, binary
                cls
clus              0  1
  ADAL MUTATED    1  2
  ADAL WILD-TYPE 16 52
[1] "tbl2"
                cls
clus             [,1] [,2]
  ADAL MUTATED      1    2
  ADAL WILD-TYPE   16   52
   clus
vv  ADAL MUTATED ADAL WILD-TYPE
  0            1             16
  1            2             52
                vv
clus             M0 M1 MX
  ADAL MUTATED    1  0  2
  ADAL WILD-TYPE 38  3 28
D270V6, multiclass
    clus
vv   ADAL MUTATED ADAL WILD-TYPE
  M0            1             38
  M1            0              3
  MX            2             28
D270V7, binary
                cls
clus              0  1
  ADAL MUTATED    2  1
  ADAL WILD-TYPE 34 35
[1] "tbl2"
                cls
clus             [,1] [,2]
  ADAL MUTATED      2    1
  ADAL WILD-TYPE   34   35
        clus
vv       ADAL MUTATED ADAL WILD-TYPE
  FEMALE            2             34
  MALE              1             35
                vv
clus             PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  ADAL MUTATED                                     3
  ADAL WILD-TYPE                                  62
                vv
clus             PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  ADAL MUTATED                                       0
  ADAL WILD-TYPE                                     4
                vv
clus             PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  ADAL MUTATED                                                  0
  ADAL WILD-TYPE                                                2
D270V8, multiclass
                                                  clus
vv                                                 ADAL MUTATED ADAL WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                         3             62
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                       0              4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA            0              2
D270V9, continuous
D270V10, continuous
                vv
clus             R0 R1 RX
  ADAL MUTATED    2  1  0
  ADAL WILD-TYPE 40 23  2
D270V11, multiclass
    clus
vv   ADAL MUTATED ADAL WILD-TYPE
  R0            2             40
  R1            1             23
  RX            0              2
D270V12, continuous

Clustering(271) Variable = TWISTNB MUTATION ANALYSIS
D271V1, survival
                   sevent
clus2                0  1
  TWISTNB MUTATED    2  3
  TWISTNB WILD-TYPE 38 26
  TWISTNB MUTATED TWISTNB WILD-TYPE 
                5                64 
  TWISTNB MUTATED TWISTNB WILD-TYPE 
                3                26 
$`TWISTNB MUTATED`
TCGA-F2-7276 TCGA-F2-A44G TCGA-FB-A7DR TCGA-HZ-7922 TCGA-IB-7651 
        7.10         5.03         5.46         0.13        19.82 

$`TWISTNB WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-A44H TCGA-FB-A4P5 TCGA-FB-A4P6 
       10.98         9.70        11.84        19.27         0.13        11.93 
TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FZ-5920 TCGA-FZ-5922 TCGA-FZ-5923 
       12.66         2.47         0.03         2.01        36.20        20.81 
TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-7919 
       12.89         7.66        13.02         7.89         0.92         0.66 
TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 
        0.26        12.13        11.87         0.26         0.62         0.79 
TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8636 TCGA-HZ-8638 
        0.69         3.95         0.92         0.53         0.16         2.99 
TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7645 
        0.76         0.95         6.38         1.51        11.41        49.38 
TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7886 
        4.77        21.90        15.35        15.65        27.98         4.04 
TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-7893 
        3.62        43.79        15.81        19.66        16.04         3.85 
TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ 
       15.98         0.56        17.16        10.82         9.86         7.20 
TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W TCGA-PZ-A5RE 
       15.12         0.26         1.35         4.18         3.62         8.12 
TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
       13.68        16.80        14.14        18.67 

  TWISTNB MUTATED TWISTNB WILD-TYPE 
             0.13              0.03 
  TWISTNB MUTATED TWISTNB WILD-TYPE 
            19.82             49.38 
  TWISTNB MUTATED TWISTNB WILD-TYPE 
            5.460             8.005 
[1] "0.1 - 19.8 (5.5)" "0.0 - 49.4 (8.0)"
       TCGA-F2-6879        TCGA-F2-6880        TCGA-F2-7273        TCGA-F2-7276 
"TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE"   "TWISTNB MUTATED" 
       TCGA-F2-A44G        TCGA-F2-A44H        TCGA-FB-A4P5        TCGA-FB-A4P6 
  "TWISTNB MUTATED" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" 
       TCGA-FB-A545        TCGA-FB-A5VM        TCGA-FB-A78T        TCGA-FB-A7DR 
"TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE"   "TWISTNB MUTATED" 
       TCGA-FZ-5920        TCGA-FZ-5922        TCGA-FZ-5923        TCGA-H6-8124 
"TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" 
       TCGA-H6-A45N        TCGA-H8-A6C1        TCGA-HZ-7289        TCGA-HZ-7918 
"TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" 
       TCGA-HZ-7919        TCGA-HZ-7922        TCGA-HZ-7923        TCGA-HZ-7924 
"TWISTNB WILD-TYPE"   "TWISTNB MUTATED" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" 
       TCGA-HZ-7925        TCGA-HZ-7926        TCGA-HZ-8001        TCGA-HZ-8002 
"TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" 
       TCGA-HZ-8003        TCGA-HZ-8005        TCGA-HZ-8315        TCGA-HZ-8317 
"TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" 
       TCGA-HZ-8636        TCGA-HZ-8638        TCGA-HZ-A49G        TCGA-HZ-A49H 
"TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" 
       TCGA-HZ-A4BH        TCGA-HZ-A4BK        TCGA-IB-7644        TCGA-IB-7645 
"TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" 
       TCGA-IB-7646        TCGA-IB-7647        TCGA-IB-7649        TCGA-IB-7651 
"TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE"   "TWISTNB MUTATED" 
       TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-7886        TCGA-IB-7887 
"TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" 
       TCGA-IB-7888        TCGA-IB-7889        TCGA-IB-7890        TCGA-IB-7891 
"TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" 
       TCGA-IB-7893        TCGA-IB-7897        TCGA-IB-8126        TCGA-IB-8127 
"TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" 
       TCGA-IB-A5SO        TCGA-IB-A5SP        TCGA-IB-A5SQ        TCGA-IB-A5SS 
"TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" 
       TCGA-IB-A5ST        TCGA-IB-A6UG        TCGA-LB-A7SX        TCGA-OE-A75W 
"TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" 
       TCGA-PZ-A5RE        TCGA-Q3-A5QY        TCGA-US-A779        TCGA-US-A77E 
"TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" 
       TCGA-US-A77J 
"TWISTNB WILD-TYPE" 
       TCGA-F2-6879        TCGA-F2-6880        TCGA-F2-7273        TCGA-F2-7276 
"TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE"   "TWISTNB MUTATED" 
       TCGA-F2-A44G        TCGA-F2-A44H        TCGA-FB-A4P5        TCGA-FB-A4P6 
  "TWISTNB MUTATED" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" 
       TCGA-FB-A545        TCGA-FB-A5VM        TCGA-FB-A78T        TCGA-FB-A7DR 
"TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE"   "TWISTNB MUTATED" 
       TCGA-FZ-5920        TCGA-FZ-5922        TCGA-FZ-5923        TCGA-H6-8124 
"TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" 
       TCGA-H6-A45N        TCGA-H8-A6C1        TCGA-HZ-7289        TCGA-HZ-7918 
"TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" 
       TCGA-HZ-7919        TCGA-HZ-7922        TCGA-HZ-7923        TCGA-HZ-7924 
"TWISTNB WILD-TYPE"   "TWISTNB MUTATED" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" 
       TCGA-HZ-7925        TCGA-HZ-7926        TCGA-HZ-8001        TCGA-HZ-8002 
"TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" 
       TCGA-HZ-8003        TCGA-HZ-8005        TCGA-HZ-8315        TCGA-HZ-8317 
"TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" 
       TCGA-HZ-8636        TCGA-HZ-8638        TCGA-HZ-A49G        TCGA-HZ-A49H 
"TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" 
       TCGA-HZ-A4BH        TCGA-HZ-A4BK        TCGA-IB-7644        TCGA-IB-7645 
"TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" 
       TCGA-IB-7646        TCGA-IB-7647        TCGA-IB-7649        TCGA-IB-7651 
"TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE"   "TWISTNB MUTATED" 
       TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-7886        TCGA-IB-7887 
"TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" 
       TCGA-IB-7888        TCGA-IB-7889        TCGA-IB-7890        TCGA-IB-7891 
"TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" 
       TCGA-IB-7893        TCGA-IB-7897        TCGA-IB-8126        TCGA-IB-8127 
"TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" 
       TCGA-IB-A5SO        TCGA-IB-A5SP        TCGA-IB-A5SQ        TCGA-IB-A5SS 
"TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" 
       TCGA-IB-A5ST        TCGA-IB-A6UG        TCGA-LB-A7SX        TCGA-OE-A75W 
"TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" 
       TCGA-PZ-A5RE        TCGA-Q3-A5QY        TCGA-US-A779        TCGA-US-A77E 
"TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" 
       TCGA-US-A77J 
"TWISTNB WILD-TYPE" 
       TCGA-F2-6879        TCGA-F2-6880        TCGA-F2-7273        TCGA-F2-7276 
"TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE"   "TWISTNB MUTATED" 
       TCGA-F2-A44G        TCGA-F2-A44H        TCGA-FB-A4P5        TCGA-FB-A4P6 
  "TWISTNB MUTATED" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" 
       TCGA-FB-A545        TCGA-FB-A5VM        TCGA-FB-A78T        TCGA-FB-A7DR 
"TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE"   "TWISTNB MUTATED" 
       TCGA-FZ-5920        TCGA-FZ-5922        TCGA-FZ-5923        TCGA-H6-8124 
"TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" 
       TCGA-H6-A45N        TCGA-H8-A6C1        TCGA-HZ-7289        TCGA-HZ-7918 
"TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" 
       TCGA-HZ-7919        TCGA-HZ-7922        TCGA-HZ-7923        TCGA-HZ-7924 
"TWISTNB WILD-TYPE"   "TWISTNB MUTATED" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" 
       TCGA-HZ-7925        TCGA-HZ-7926        TCGA-HZ-8001        TCGA-HZ-8002 
"TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" 
       TCGA-HZ-8003        TCGA-HZ-8005        TCGA-HZ-8315        TCGA-HZ-8317 
"TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" 
       TCGA-HZ-8636        TCGA-HZ-8638        TCGA-HZ-A49G        TCGA-HZ-A49H 
"TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" 
       TCGA-HZ-A4BH        TCGA-HZ-A4BK        TCGA-IB-7644        TCGA-IB-7645 
"TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" 
       TCGA-IB-7646        TCGA-IB-7647        TCGA-IB-7649        TCGA-IB-7651 
"TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE"   "TWISTNB MUTATED" 
       TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-7886        TCGA-IB-7887 
"TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" 
       TCGA-IB-7888        TCGA-IB-7889        TCGA-IB-7890        TCGA-IB-7891 
"TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" 
       TCGA-IB-7893        TCGA-IB-7897        TCGA-IB-8126        TCGA-IB-8127 
"TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" 
       TCGA-IB-A5SO        TCGA-IB-A5SP        TCGA-IB-A5SQ        TCGA-IB-A5SS 
"TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" 
       TCGA-IB-A5ST        TCGA-IB-A6UG        TCGA-LB-A7SX        TCGA-OE-A75W 
"TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" 
       TCGA-PZ-A5RE        TCGA-Q3-A5QY        TCGA-US-A779        TCGA-US-A77E 
"TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" 
       TCGA-US-A77J 
"TWISTNB WILD-TYPE" 
[1] "hr=" "1.8"
D271V2, continuous
                   vv
clus                STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  TWISTNB MUTATED          0        0         1         4         0        0
  TWISTNB WILD-TYPE        1        4        10        47         2        3
D271V3, multiclass
                   vv
clus                T1+T2 T3+T4
  TWISTNB MUTATED       0     5
  TWISTNB WILD-TYPE     6    61
D271V4, multiclass
       clus
vv      TWISTNB MUTATED TWISTNB WILD-TYPE
  T1+T2               0                 6
  T3+T4               5                61
D271V5, binary
                   cls
clus                 0  1
  TWISTNB MUTATED    0  4
  TWISTNB WILD-TYPE 17 50
[1] "tbl2"
                   cls
clus                [,1] [,2]
  TWISTNB MUTATED      0    4
  TWISTNB WILD-TYPE   17   50
   clus
vv  TWISTNB MUTATED TWISTNB WILD-TYPE
  0               0                17
  1               4                50
                   vv
clus                M0 M1 MX
  TWISTNB MUTATED    4  0  1
  TWISTNB WILD-TYPE 35  3 29
D271V6, multiclass
    clus
vv   TWISTNB MUTATED TWISTNB WILD-TYPE
  M0               4                35
  M1               0                 3
  MX               1                29
D271V7, binary
                   cls
clus                 0  1
  TWISTNB MUTATED    3  2
  TWISTNB WILD-TYPE 33 34
[1] "tbl2"
                   cls
clus                [,1] [,2]
  TWISTNB MUTATED      3    2
  TWISTNB WILD-TYPE   33   34
        clus
vv       TWISTNB MUTATED TWISTNB WILD-TYPE
  FEMALE               3                33
  MALE                 2                34
                   vv
clus                PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  TWISTNB MUTATED                                     4
  TWISTNB WILD-TYPE                                  61
                   vv
clus                PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  TWISTNB MUTATED                                       0
  TWISTNB WILD-TYPE                                     4
                   vv
clus                PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  TWISTNB MUTATED                                                  1
  TWISTNB WILD-TYPE                                                1
D271V8, multiclass
                                                  clus
vv                                                 TWISTNB MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                            4
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                          0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA               1
                                                  clus
vv                                                 TWISTNB WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                             61
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                            4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                 1
D271V9, continuous
[1] "Remove cluster labels:" "TWISTNB MUTATED"       
clus
  TWISTNB MUTATED TWISTNB WILD-TYPE 
                2                20 
       TCGA-F2-6880        TCGA-FB-A4P5        TCGA-FB-A4P6        TCGA-FB-A5VM 
"TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" 
       TCGA-FB-A78T        TCGA-H6-8124        TCGA-H6-A45N        TCGA-H8-A6C1 
"TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" 
       TCGA-IB-7644        TCGA-IB-7649        TCGA-IB-7885        TCGA-IB-7886 
"TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" 
       TCGA-IB-7887        TCGA-IB-7891        TCGA-IB-8126        TCGA-IB-8127 
"TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" 
       TCGA-IB-A5SS        TCGA-IB-A6UG        TCGA-LB-A7SX        TCGA-OE-A75W 
"TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" 
D271V10, continuous
[1] "Remove cluster labels:" "TWISTNB MUTATED"       
clus
  TWISTNB MUTATED TWISTNB WILD-TYPE 
                2                17 
       TCGA-FB-A4P5        TCGA-FB-A4P6        TCGA-FB-A5VM        TCGA-FB-A78T 
"TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" 
       TCGA-H6-8124        TCGA-H8-A6C1        TCGA-IB-7644        TCGA-IB-7649 
"TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" 
       TCGA-IB-7885        TCGA-IB-7886        TCGA-IB-7891        TCGA-IB-8126 
"TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" 
       TCGA-IB-8127        TCGA-IB-A5SS        TCGA-IB-A6UG        TCGA-LB-A7SX 
"TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" 
       TCGA-OE-A75W 
"TWISTNB WILD-TYPE" 
                   vv
clus                R0 R1 RX
  TWISTNB MUTATED    4  1  0
  TWISTNB WILD-TYPE 38 23  2
D271V11, multiclass
    clus
vv   TWISTNB MUTATED TWISTNB WILD-TYPE
  R0               4                38
  R1               1                23
  RX               0                 2
D271V12, continuous

Clustering(272) Variable = CSNK1G3 MUTATION ANALYSIS
D272V1, survival
                   sevent
clus2                0  1
  CSNK1G3 MUTATED    5  0
  CSNK1G3 WILD-TYPE 35 29
  CSNK1G3 MUTATED CSNK1G3 WILD-TYPE 
                5                64 
  CSNK1G3 MUTATED CSNK1G3 WILD-TYPE 
                0                29 
$`CSNK1G3 MUTATED`
TCGA-FB-A4P6 TCGA-HZ-7924 TCGA-HZ-8317 TCGA-HZ-A4BH TCGA-IB-8126 
       11.93        12.13         0.53         6.38         0.56 

$`CSNK1G3 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P5 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR TCGA-FZ-5920 
        0.13        12.66         2.47         0.03         5.46         2.01 
TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7289 
       36.20        20.81        12.89         7.66        13.02         7.89 
TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7925 TCGA-HZ-7926 
        0.92         0.66         0.13         0.26        11.87         0.26 
TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8636 
        0.62         0.79         0.69         3.95         0.92         0.16 
TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7645 
        2.99         0.76         0.95         1.51        11.41        49.38 
TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7651 TCGA-IB-7652 TCGA-IB-7885 
        4.77        21.90        15.35        19.82        15.65        27.98 
TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 
        4.04         3.62        43.79        15.81        19.66        16.04 
TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ 
        3.85        15.98        17.16        10.82         9.86         7.20 
TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W TCGA-PZ-A5RE 
       15.12         0.26         1.35         4.18         3.62         8.12 
TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
       13.68        16.80        14.14        18.67 

  CSNK1G3 MUTATED CSNK1G3 WILD-TYPE 
             0.53              0.03 
  CSNK1G3 MUTATED CSNK1G3 WILD-TYPE 
            12.13             49.38 
  CSNK1G3 MUTATED CSNK1G3 WILD-TYPE 
            6.380             7.775 
[1] "0.5 - 12.1 (6.4)" "0.0 - 49.4 (7.8)"
       TCGA-F2-6879        TCGA-F2-6880        TCGA-F2-7273        TCGA-F2-7276 
"CSNK1G3 WILD-TYPE" "CSNK1G3 WILD-TYPE" "CSNK1G3 WILD-TYPE" "CSNK1G3 WILD-TYPE" 
       TCGA-F2-A44G        TCGA-F2-A44H        TCGA-FB-A4P5        TCGA-FB-A4P6 
"CSNK1G3 WILD-TYPE" "CSNK1G3 WILD-TYPE" "CSNK1G3 WILD-TYPE"   "CSNK1G3 MUTATED" 
       TCGA-FB-A545        TCGA-FB-A5VM        TCGA-FB-A78T        TCGA-FB-A7DR 
"CSNK1G3 WILD-TYPE" "CSNK1G3 WILD-TYPE" "CSNK1G3 WILD-TYPE" "CSNK1G3 WILD-TYPE" 
       TCGA-FZ-5920        TCGA-FZ-5922        TCGA-FZ-5923        TCGA-H6-8124 
"CSNK1G3 WILD-TYPE" "CSNK1G3 WILD-TYPE" "CSNK1G3 WILD-TYPE" "CSNK1G3 WILD-TYPE" 
       TCGA-H6-A45N        TCGA-H8-A6C1        TCGA-HZ-7289        TCGA-HZ-7918 
"CSNK1G3 WILD-TYPE" "CSNK1G3 WILD-TYPE" "CSNK1G3 WILD-TYPE" "CSNK1G3 WILD-TYPE" 
       TCGA-HZ-7919        TCGA-HZ-7922        TCGA-HZ-7923        TCGA-HZ-7924 
"CSNK1G3 WILD-TYPE" "CSNK1G3 WILD-TYPE" "CSNK1G3 WILD-TYPE"   "CSNK1G3 MUTATED" 
       TCGA-HZ-7925        TCGA-HZ-7926        TCGA-HZ-8001        TCGA-HZ-8002 
"CSNK1G3 WILD-TYPE" "CSNK1G3 WILD-TYPE" "CSNK1G3 WILD-TYPE" "CSNK1G3 WILD-TYPE" 
       TCGA-HZ-8003        TCGA-HZ-8005        TCGA-HZ-8315        TCGA-HZ-8317 
"CSNK1G3 WILD-TYPE" "CSNK1G3 WILD-TYPE" "CSNK1G3 WILD-TYPE"   "CSNK1G3 MUTATED" 
       TCGA-HZ-8636        TCGA-HZ-8638        TCGA-HZ-A49G        TCGA-HZ-A49H 
"CSNK1G3 WILD-TYPE" "CSNK1G3 WILD-TYPE" "CSNK1G3 WILD-TYPE" "CSNK1G3 WILD-TYPE" 
       TCGA-HZ-A4BH        TCGA-HZ-A4BK        TCGA-IB-7644        TCGA-IB-7645 
  "CSNK1G3 MUTATED" "CSNK1G3 WILD-TYPE" "CSNK1G3 WILD-TYPE" "CSNK1G3 WILD-TYPE" 
       TCGA-IB-7646        TCGA-IB-7647        TCGA-IB-7649        TCGA-IB-7651 
"CSNK1G3 WILD-TYPE" "CSNK1G3 WILD-TYPE" "CSNK1G3 WILD-TYPE" "CSNK1G3 WILD-TYPE" 
       TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-7886        TCGA-IB-7887 
"CSNK1G3 WILD-TYPE" "CSNK1G3 WILD-TYPE" "CSNK1G3 WILD-TYPE" "CSNK1G3 WILD-TYPE" 
       TCGA-IB-7888        TCGA-IB-7889        TCGA-IB-7890        TCGA-IB-7891 
"CSNK1G3 WILD-TYPE" "CSNK1G3 WILD-TYPE" "CSNK1G3 WILD-TYPE" "CSNK1G3 WILD-TYPE" 
       TCGA-IB-7893        TCGA-IB-7897        TCGA-IB-8126        TCGA-IB-8127 
"CSNK1G3 WILD-TYPE" "CSNK1G3 WILD-TYPE"   "CSNK1G3 MUTATED" "CSNK1G3 WILD-TYPE" 
       TCGA-IB-A5SO        TCGA-IB-A5SP        TCGA-IB-A5SQ        TCGA-IB-A5SS 
"CSNK1G3 WILD-TYPE" "CSNK1G3 WILD-TYPE" "CSNK1G3 WILD-TYPE" "CSNK1G3 WILD-TYPE" 
       TCGA-IB-A5ST        TCGA-IB-A6UG        TCGA-LB-A7SX        TCGA-OE-A75W 
"CSNK1G3 WILD-TYPE" "CSNK1G3 WILD-TYPE" "CSNK1G3 WILD-TYPE" "CSNK1G3 WILD-TYPE" 
       TCGA-PZ-A5RE        TCGA-Q3-A5QY        TCGA-US-A779        TCGA-US-A77E 
"CSNK1G3 WILD-TYPE" "CSNK1G3 WILD-TYPE" "CSNK1G3 WILD-TYPE" "CSNK1G3 WILD-TYPE" 
       TCGA-US-A77J 
"CSNK1G3 WILD-TYPE" 
       TCGA-F2-6879        TCGA-F2-6880        TCGA-F2-7273        TCGA-F2-7276 
"CSNK1G3 WILD-TYPE" "CSNK1G3 WILD-TYPE" "CSNK1G3 WILD-TYPE" "CSNK1G3 WILD-TYPE" 
       TCGA-F2-A44G        TCGA-F2-A44H        TCGA-FB-A4P5        TCGA-FB-A4P6 
"CSNK1G3 WILD-TYPE" "CSNK1G3 WILD-TYPE" "CSNK1G3 WILD-TYPE"   "CSNK1G3 MUTATED" 
       TCGA-FB-A545        TCGA-FB-A5VM        TCGA-FB-A78T        TCGA-FB-A7DR 
"CSNK1G3 WILD-TYPE" "CSNK1G3 WILD-TYPE" "CSNK1G3 WILD-TYPE" "CSNK1G3 WILD-TYPE" 
       TCGA-FZ-5920        TCGA-FZ-5922        TCGA-FZ-5923        TCGA-H6-8124 
"CSNK1G3 WILD-TYPE" "CSNK1G3 WILD-TYPE" "CSNK1G3 WILD-TYPE" "CSNK1G3 WILD-TYPE" 
       TCGA-H6-A45N        TCGA-H8-A6C1        TCGA-HZ-7289        TCGA-HZ-7918 
"CSNK1G3 WILD-TYPE" "CSNK1G3 WILD-TYPE" "CSNK1G3 WILD-TYPE" "CSNK1G3 WILD-TYPE" 
       TCGA-HZ-7919        TCGA-HZ-7922        TCGA-HZ-7923        TCGA-HZ-7924 
"CSNK1G3 WILD-TYPE" "CSNK1G3 WILD-TYPE" "CSNK1G3 WILD-TYPE"   "CSNK1G3 MUTATED" 
       TCGA-HZ-7925        TCGA-HZ-7926        TCGA-HZ-8001        TCGA-HZ-8002 
"CSNK1G3 WILD-TYPE" "CSNK1G3 WILD-TYPE" "CSNK1G3 WILD-TYPE" "CSNK1G3 WILD-TYPE" 
       TCGA-HZ-8003        TCGA-HZ-8005        TCGA-HZ-8315        TCGA-HZ-8317 
"CSNK1G3 WILD-TYPE" "CSNK1G3 WILD-TYPE" "CSNK1G3 WILD-TYPE"   "CSNK1G3 MUTATED" 
       TCGA-HZ-8636        TCGA-HZ-8638        TCGA-HZ-A49G        TCGA-HZ-A49H 
"CSNK1G3 WILD-TYPE" "CSNK1G3 WILD-TYPE" "CSNK1G3 WILD-TYPE" "CSNK1G3 WILD-TYPE" 
       TCGA-HZ-A4BH        TCGA-HZ-A4BK        TCGA-IB-7644        TCGA-IB-7645 
  "CSNK1G3 MUTATED" "CSNK1G3 WILD-TYPE" "CSNK1G3 WILD-TYPE" "CSNK1G3 WILD-TYPE" 
       TCGA-IB-7646        TCGA-IB-7647        TCGA-IB-7649        TCGA-IB-7651 
"CSNK1G3 WILD-TYPE" "CSNK1G3 WILD-TYPE" "CSNK1G3 WILD-TYPE" "CSNK1G3 WILD-TYPE" 
       TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-7886        TCGA-IB-7887 
"CSNK1G3 WILD-TYPE" "CSNK1G3 WILD-TYPE" "CSNK1G3 WILD-TYPE" "CSNK1G3 WILD-TYPE" 
       TCGA-IB-7888        TCGA-IB-7889        TCGA-IB-7890        TCGA-IB-7891 
"CSNK1G3 WILD-TYPE" "CSNK1G3 WILD-TYPE" "CSNK1G3 WILD-TYPE" "CSNK1G3 WILD-TYPE" 
       TCGA-IB-7893        TCGA-IB-7897        TCGA-IB-8126        TCGA-IB-8127 
"CSNK1G3 WILD-TYPE" "CSNK1G3 WILD-TYPE"   "CSNK1G3 MUTATED" "CSNK1G3 WILD-TYPE" 
       TCGA-IB-A5SO        TCGA-IB-A5SP        TCGA-IB-A5SQ        TCGA-IB-A5SS 
"CSNK1G3 WILD-TYPE" "CSNK1G3 WILD-TYPE" "CSNK1G3 WILD-TYPE" "CSNK1G3 WILD-TYPE" 
       TCGA-IB-A5ST        TCGA-IB-A6UG        TCGA-LB-A7SX        TCGA-OE-A75W 
"CSNK1G3 WILD-TYPE" "CSNK1G3 WILD-TYPE" "CSNK1G3 WILD-TYPE" "CSNK1G3 WILD-TYPE" 
       TCGA-PZ-A5RE        TCGA-Q3-A5QY        TCGA-US-A779        TCGA-US-A77E 
"CSNK1G3 WILD-TYPE" "CSNK1G3 WILD-TYPE" "CSNK1G3 WILD-TYPE" "CSNK1G3 WILD-TYPE" 
       TCGA-US-A77J 
"CSNK1G3 WILD-TYPE" 
       TCGA-F2-6879        TCGA-F2-6880        TCGA-F2-7273        TCGA-F2-7276 
"CSNK1G3 WILD-TYPE" "CSNK1G3 WILD-TYPE" "CSNK1G3 WILD-TYPE" "CSNK1G3 WILD-TYPE" 
       TCGA-F2-A44G        TCGA-F2-A44H        TCGA-FB-A4P5        TCGA-FB-A4P6 
"CSNK1G3 WILD-TYPE" "CSNK1G3 WILD-TYPE" "CSNK1G3 WILD-TYPE"   "CSNK1G3 MUTATED" 
       TCGA-FB-A545        TCGA-FB-A5VM        TCGA-FB-A78T        TCGA-FB-A7DR 
"CSNK1G3 WILD-TYPE" "CSNK1G3 WILD-TYPE" "CSNK1G3 WILD-TYPE" "CSNK1G3 WILD-TYPE" 
       TCGA-FZ-5920        TCGA-FZ-5922        TCGA-FZ-5923        TCGA-H6-8124 
"CSNK1G3 WILD-TYPE" "CSNK1G3 WILD-TYPE" "CSNK1G3 WILD-TYPE" "CSNK1G3 WILD-TYPE" 
       TCGA-H6-A45N        TCGA-H8-A6C1        TCGA-HZ-7289        TCGA-HZ-7918 
"CSNK1G3 WILD-TYPE" "CSNK1G3 WILD-TYPE" "CSNK1G3 WILD-TYPE" "CSNK1G3 WILD-TYPE" 
       TCGA-HZ-7919        TCGA-HZ-7922        TCGA-HZ-7923        TCGA-HZ-7924 
"CSNK1G3 WILD-TYPE" "CSNK1G3 WILD-TYPE" "CSNK1G3 WILD-TYPE"   "CSNK1G3 MUTATED" 
       TCGA-HZ-7925        TCGA-HZ-7926        TCGA-HZ-8001        TCGA-HZ-8002 
"CSNK1G3 WILD-TYPE" "CSNK1G3 WILD-TYPE" "CSNK1G3 WILD-TYPE" "CSNK1G3 WILD-TYPE" 
       TCGA-HZ-8003        TCGA-HZ-8005        TCGA-HZ-8315        TCGA-HZ-8317 
"CSNK1G3 WILD-TYPE" "CSNK1G3 WILD-TYPE" "CSNK1G3 WILD-TYPE"   "CSNK1G3 MUTATED" 
       TCGA-HZ-8636        TCGA-HZ-8638        TCGA-HZ-A49G        TCGA-HZ-A49H 
"CSNK1G3 WILD-TYPE" "CSNK1G3 WILD-TYPE" "CSNK1G3 WILD-TYPE" "CSNK1G3 WILD-TYPE" 
       TCGA-HZ-A4BH        TCGA-HZ-A4BK        TCGA-IB-7644        TCGA-IB-7645 
  "CSNK1G3 MUTATED" "CSNK1G3 WILD-TYPE" "CSNK1G3 WILD-TYPE" "CSNK1G3 WILD-TYPE" 
       TCGA-IB-7646        TCGA-IB-7647        TCGA-IB-7649        TCGA-IB-7651 
"CSNK1G3 WILD-TYPE" "CSNK1G3 WILD-TYPE" "CSNK1G3 WILD-TYPE" "CSNK1G3 WILD-TYPE" 
       TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-7886        TCGA-IB-7887 
"CSNK1G3 WILD-TYPE" "CSNK1G3 WILD-TYPE" "CSNK1G3 WILD-TYPE" "CSNK1G3 WILD-TYPE" 
       TCGA-IB-7888        TCGA-IB-7889        TCGA-IB-7890        TCGA-IB-7891 
"CSNK1G3 WILD-TYPE" "CSNK1G3 WILD-TYPE" "CSNK1G3 WILD-TYPE" "CSNK1G3 WILD-TYPE" 
       TCGA-IB-7893        TCGA-IB-7897        TCGA-IB-8126        TCGA-IB-8127 
"CSNK1G3 WILD-TYPE" "CSNK1G3 WILD-TYPE"   "CSNK1G3 MUTATED" "CSNK1G3 WILD-TYPE" 
       TCGA-IB-A5SO        TCGA-IB-A5SP        TCGA-IB-A5SQ        TCGA-IB-A5SS 
"CSNK1G3 WILD-TYPE" "CSNK1G3 WILD-TYPE" "CSNK1G3 WILD-TYPE" "CSNK1G3 WILD-TYPE" 
       TCGA-IB-A5ST        TCGA-IB-A6UG        TCGA-LB-A7SX        TCGA-OE-A75W 
"CSNK1G3 WILD-TYPE" "CSNK1G3 WILD-TYPE" "CSNK1G3 WILD-TYPE" "CSNK1G3 WILD-TYPE" 
       TCGA-PZ-A5RE        TCGA-Q3-A5QY        TCGA-US-A779        TCGA-US-A77E 
"CSNK1G3 WILD-TYPE" "CSNK1G3 WILD-TYPE" "CSNK1G3 WILD-TYPE" "CSNK1G3 WILD-TYPE" 
       TCGA-US-A77J 
"CSNK1G3 WILD-TYPE" 
[1] "hr="     "2.7e+07"
D272V2, continuous
                   vv
clus                STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  CSNK1G3 MUTATED          0        0         1         3         1        0
  CSNK1G3 WILD-TYPE        1        4        10        48         1        3
D272V3, multiclass
                   vv
clus                T1+T2 T3+T4
  CSNK1G3 MUTATED       0     5
  CSNK1G3 WILD-TYPE     6    61
D272V4, multiclass
       clus
vv      CSNK1G3 MUTATED CSNK1G3 WILD-TYPE
  T1+T2               0                 6
  T3+T4               5                61
D272V5, binary
                   cls
clus                 0  1
  CSNK1G3 MUTATED    1  4
  CSNK1G3 WILD-TYPE 16 50
[1] "tbl2"
                   cls
clus                [,1] [,2]
  CSNK1G3 MUTATED      1    4
  CSNK1G3 WILD-TYPE   16   50
   clus
vv  CSNK1G3 MUTATED CSNK1G3 WILD-TYPE
  0               1                16
  1               4                50
                   vv
clus                M0 M1 MX
  CSNK1G3 MUTATED    1  0  4
  CSNK1G3 WILD-TYPE 38  3 26
D272V6, multiclass
    clus
vv   CSNK1G3 MUTATED CSNK1G3 WILD-TYPE
  M0               1                38
  M1               0                 3
  MX               4                26
D272V7, binary
                   cls
clus                 0  1
  CSNK1G3 MUTATED    3  2
  CSNK1G3 WILD-TYPE 33 34
[1] "tbl2"
                   cls
clus                [,1] [,2]
  CSNK1G3 MUTATED      3    2
  CSNK1G3 WILD-TYPE   33   34
        clus
vv       CSNK1G3 MUTATED CSNK1G3 WILD-TYPE
  FEMALE               3                33
  MALE                 2                34
                   vv
clus                PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  CSNK1G3 MUTATED                                     5
  CSNK1G3 WILD-TYPE                                  60
                   vv
clus                PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  CSNK1G3 MUTATED                                       0
  CSNK1G3 WILD-TYPE                                     4
                   vv
clus                PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  CSNK1G3 MUTATED                                                  0
  CSNK1G3 WILD-TYPE                                                2
D272V8, multiclass
                                                  clus
vv                                                 CSNK1G3 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                            5
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                          0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA               0
                                                  clus
vv                                                 CSNK1G3 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                             60
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                            4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                 2
D272V9, continuous
[1] "Remove cluster labels:" "CSNK1G3 MUTATED"       
clus
  CSNK1G3 MUTATED CSNK1G3 WILD-TYPE 
                2                20 
       TCGA-F2-6880        TCGA-FB-A4P5        TCGA-FB-A5VM        TCGA-FB-A78T 
"CSNK1G3 WILD-TYPE" "CSNK1G3 WILD-TYPE" "CSNK1G3 WILD-TYPE" "CSNK1G3 WILD-TYPE" 
       TCGA-FB-A7DR        TCGA-H6-8124        TCGA-H6-A45N        TCGA-H8-A6C1 
"CSNK1G3 WILD-TYPE" "CSNK1G3 WILD-TYPE" "CSNK1G3 WILD-TYPE" "CSNK1G3 WILD-TYPE" 
       TCGA-IB-7644        TCGA-IB-7649        TCGA-IB-7651        TCGA-IB-7885 
"CSNK1G3 WILD-TYPE" "CSNK1G3 WILD-TYPE" "CSNK1G3 WILD-TYPE" "CSNK1G3 WILD-TYPE" 
       TCGA-IB-7886        TCGA-IB-7887        TCGA-IB-7891        TCGA-IB-8127 
"CSNK1G3 WILD-TYPE" "CSNK1G3 WILD-TYPE" "CSNK1G3 WILD-TYPE" "CSNK1G3 WILD-TYPE" 
       TCGA-IB-A5SS        TCGA-IB-A6UG        TCGA-LB-A7SX        TCGA-OE-A75W 
"CSNK1G3 WILD-TYPE" "CSNK1G3 WILD-TYPE" "CSNK1G3 WILD-TYPE" "CSNK1G3 WILD-TYPE" 
D272V10, continuous
[1] "Remove cluster labels:" "CSNK1G3 MUTATED"       
clus
  CSNK1G3 MUTATED CSNK1G3 WILD-TYPE 
                2                17 
       TCGA-FB-A4P5        TCGA-FB-A5VM        TCGA-FB-A78T        TCGA-FB-A7DR 
"CSNK1G3 WILD-TYPE" "CSNK1G3 WILD-TYPE" "CSNK1G3 WILD-TYPE" "CSNK1G3 WILD-TYPE" 
       TCGA-H6-8124        TCGA-H8-A6C1        TCGA-IB-7644        TCGA-IB-7649 
"CSNK1G3 WILD-TYPE" "CSNK1G3 WILD-TYPE" "CSNK1G3 WILD-TYPE" "CSNK1G3 WILD-TYPE" 
       TCGA-IB-7651        TCGA-IB-7885        TCGA-IB-7886        TCGA-IB-7891 
"CSNK1G3 WILD-TYPE" "CSNK1G3 WILD-TYPE" "CSNK1G3 WILD-TYPE" "CSNK1G3 WILD-TYPE" 
       TCGA-IB-8127        TCGA-IB-A5SS        TCGA-IB-A6UG        TCGA-LB-A7SX 
"CSNK1G3 WILD-TYPE" "CSNK1G3 WILD-TYPE" "CSNK1G3 WILD-TYPE" "CSNK1G3 WILD-TYPE" 
       TCGA-OE-A75W 
"CSNK1G3 WILD-TYPE" 
                   vv
clus                R0 R1 RX
  CSNK1G3 MUTATED    1  3  0
  CSNK1G3 WILD-TYPE 41 21  2
D272V11, multiclass
    clus
vv   CSNK1G3 MUTATED CSNK1G3 WILD-TYPE
  R0               1                41
  R1               3                21
  RX               0                 2
D272V12, continuous

Clustering(273) Variable = PLCZ1 MUTATION ANALYSIS
D273V1, survival
                 sevent
clus2              0  1
  PLCZ1 MUTATED    3  1
  PLCZ1 WILD-TYPE 37 28
  PLCZ1 MUTATED PLCZ1 WILD-TYPE 
              4              65 
  PLCZ1 MUTATED PLCZ1 WILD-TYPE 
              1              28 
$`PLCZ1 MUTATED`
TCGA-H6-8124 TCGA-HZ-8001 TCGA-HZ-8003 TCGA-IB-7890 
       12.89         0.62         0.69        19.66 

$`PLCZ1 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P5 TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR 
        0.13        11.93        12.66         2.47         0.03         5.46 
TCGA-FZ-5920 TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7289 
        2.01        36.20        20.81         7.66        13.02         7.89 
TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 
        0.92         0.66         0.13         0.26        12.13        11.87 
TCGA-HZ-7926 TCGA-HZ-8002 TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8636 
        0.26         0.79         3.95         0.92         0.53         0.16 
TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 
        2.99         0.76         0.95         6.38         1.51        11.41 
TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7651 TCGA-IB-7652 
       49.38         4.77        21.90        15.35        19.82        15.65 
TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7891 
       27.98         4.04         3.62        43.79        15.81        16.04 
TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP 
        3.85        15.98         0.56        17.16        10.82         9.86 
TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W 
        7.20        15.12         0.26         1.35         4.18         3.62 
TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
        8.12        13.68        16.80        14.14        18.67 

  PLCZ1 MUTATED PLCZ1 WILD-TYPE 
           0.62            0.03 
  PLCZ1 MUTATED PLCZ1 WILD-TYPE 
          19.66           49.38 
  PLCZ1 MUTATED PLCZ1 WILD-TYPE 
           6.79            7.66 
[1] "0.6 - 19.7 (6.8)" "0.0 - 49.4 (7.7)"
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"PLCZ1 WILD-TYPE" "PLCZ1 WILD-TYPE" "PLCZ1 WILD-TYPE" "PLCZ1 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"PLCZ1 WILD-TYPE" "PLCZ1 WILD-TYPE" "PLCZ1 WILD-TYPE" "PLCZ1 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"PLCZ1 WILD-TYPE" "PLCZ1 WILD-TYPE" "PLCZ1 WILD-TYPE" "PLCZ1 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"PLCZ1 WILD-TYPE" "PLCZ1 WILD-TYPE" "PLCZ1 WILD-TYPE"   "PLCZ1 MUTATED" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"PLCZ1 WILD-TYPE" "PLCZ1 WILD-TYPE" "PLCZ1 WILD-TYPE" "PLCZ1 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"PLCZ1 WILD-TYPE" "PLCZ1 WILD-TYPE" "PLCZ1 WILD-TYPE" "PLCZ1 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"PLCZ1 WILD-TYPE" "PLCZ1 WILD-TYPE"   "PLCZ1 MUTATED" "PLCZ1 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
  "PLCZ1 MUTATED" "PLCZ1 WILD-TYPE" "PLCZ1 WILD-TYPE" "PLCZ1 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"PLCZ1 WILD-TYPE" "PLCZ1 WILD-TYPE" "PLCZ1 WILD-TYPE" "PLCZ1 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"PLCZ1 WILD-TYPE" "PLCZ1 WILD-TYPE" "PLCZ1 WILD-TYPE" "PLCZ1 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"PLCZ1 WILD-TYPE" "PLCZ1 WILD-TYPE" "PLCZ1 WILD-TYPE" "PLCZ1 WILD-TYPE" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"PLCZ1 WILD-TYPE" "PLCZ1 WILD-TYPE" "PLCZ1 WILD-TYPE" "PLCZ1 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"PLCZ1 WILD-TYPE" "PLCZ1 WILD-TYPE"   "PLCZ1 MUTATED" "PLCZ1 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"PLCZ1 WILD-TYPE" "PLCZ1 WILD-TYPE" "PLCZ1 WILD-TYPE" "PLCZ1 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"PLCZ1 WILD-TYPE" "PLCZ1 WILD-TYPE" "PLCZ1 WILD-TYPE" "PLCZ1 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"PLCZ1 WILD-TYPE" "PLCZ1 WILD-TYPE" "PLCZ1 WILD-TYPE" "PLCZ1 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"PLCZ1 WILD-TYPE" "PLCZ1 WILD-TYPE" "PLCZ1 WILD-TYPE" "PLCZ1 WILD-TYPE" 
     TCGA-US-A77J 
"PLCZ1 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"PLCZ1 WILD-TYPE" "PLCZ1 WILD-TYPE" "PLCZ1 WILD-TYPE" "PLCZ1 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"PLCZ1 WILD-TYPE" "PLCZ1 WILD-TYPE" "PLCZ1 WILD-TYPE" "PLCZ1 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"PLCZ1 WILD-TYPE" "PLCZ1 WILD-TYPE" "PLCZ1 WILD-TYPE" "PLCZ1 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"PLCZ1 WILD-TYPE" "PLCZ1 WILD-TYPE" "PLCZ1 WILD-TYPE"   "PLCZ1 MUTATED" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"PLCZ1 WILD-TYPE" "PLCZ1 WILD-TYPE" "PLCZ1 WILD-TYPE" "PLCZ1 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"PLCZ1 WILD-TYPE" "PLCZ1 WILD-TYPE" "PLCZ1 WILD-TYPE" "PLCZ1 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"PLCZ1 WILD-TYPE" "PLCZ1 WILD-TYPE"   "PLCZ1 MUTATED" "PLCZ1 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
  "PLCZ1 MUTATED" "PLCZ1 WILD-TYPE" "PLCZ1 WILD-TYPE" "PLCZ1 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"PLCZ1 WILD-TYPE" "PLCZ1 WILD-TYPE" "PLCZ1 WILD-TYPE" "PLCZ1 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"PLCZ1 WILD-TYPE" "PLCZ1 WILD-TYPE" "PLCZ1 WILD-TYPE" "PLCZ1 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"PLCZ1 WILD-TYPE" "PLCZ1 WILD-TYPE" "PLCZ1 WILD-TYPE" "PLCZ1 WILD-TYPE" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"PLCZ1 WILD-TYPE" "PLCZ1 WILD-TYPE" "PLCZ1 WILD-TYPE" "PLCZ1 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"PLCZ1 WILD-TYPE" "PLCZ1 WILD-TYPE"   "PLCZ1 MUTATED" "PLCZ1 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"PLCZ1 WILD-TYPE" "PLCZ1 WILD-TYPE" "PLCZ1 WILD-TYPE" "PLCZ1 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"PLCZ1 WILD-TYPE" "PLCZ1 WILD-TYPE" "PLCZ1 WILD-TYPE" "PLCZ1 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"PLCZ1 WILD-TYPE" "PLCZ1 WILD-TYPE" "PLCZ1 WILD-TYPE" "PLCZ1 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"PLCZ1 WILD-TYPE" "PLCZ1 WILD-TYPE" "PLCZ1 WILD-TYPE" "PLCZ1 WILD-TYPE" 
     TCGA-US-A77J 
"PLCZ1 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"PLCZ1 WILD-TYPE" "PLCZ1 WILD-TYPE" "PLCZ1 WILD-TYPE" "PLCZ1 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"PLCZ1 WILD-TYPE" "PLCZ1 WILD-TYPE" "PLCZ1 WILD-TYPE" "PLCZ1 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"PLCZ1 WILD-TYPE" "PLCZ1 WILD-TYPE" "PLCZ1 WILD-TYPE" "PLCZ1 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"PLCZ1 WILD-TYPE" "PLCZ1 WILD-TYPE" "PLCZ1 WILD-TYPE"   "PLCZ1 MUTATED" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"PLCZ1 WILD-TYPE" "PLCZ1 WILD-TYPE" "PLCZ1 WILD-TYPE" "PLCZ1 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"PLCZ1 WILD-TYPE" "PLCZ1 WILD-TYPE" "PLCZ1 WILD-TYPE" "PLCZ1 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"PLCZ1 WILD-TYPE" "PLCZ1 WILD-TYPE"   "PLCZ1 MUTATED" "PLCZ1 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
  "PLCZ1 MUTATED" "PLCZ1 WILD-TYPE" "PLCZ1 WILD-TYPE" "PLCZ1 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"PLCZ1 WILD-TYPE" "PLCZ1 WILD-TYPE" "PLCZ1 WILD-TYPE" "PLCZ1 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"PLCZ1 WILD-TYPE" "PLCZ1 WILD-TYPE" "PLCZ1 WILD-TYPE" "PLCZ1 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"PLCZ1 WILD-TYPE" "PLCZ1 WILD-TYPE" "PLCZ1 WILD-TYPE" "PLCZ1 WILD-TYPE" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"PLCZ1 WILD-TYPE" "PLCZ1 WILD-TYPE" "PLCZ1 WILD-TYPE" "PLCZ1 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"PLCZ1 WILD-TYPE" "PLCZ1 WILD-TYPE"   "PLCZ1 MUTATED" "PLCZ1 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"PLCZ1 WILD-TYPE" "PLCZ1 WILD-TYPE" "PLCZ1 WILD-TYPE" "PLCZ1 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"PLCZ1 WILD-TYPE" "PLCZ1 WILD-TYPE" "PLCZ1 WILD-TYPE" "PLCZ1 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"PLCZ1 WILD-TYPE" "PLCZ1 WILD-TYPE" "PLCZ1 WILD-TYPE" "PLCZ1 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"PLCZ1 WILD-TYPE" "PLCZ1 WILD-TYPE" "PLCZ1 WILD-TYPE" "PLCZ1 WILD-TYPE" 
     TCGA-US-A77J 
"PLCZ1 WILD-TYPE" 
[1] "hr=" "1.4"
D273V2, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  PLCZ1 MUTATED          0        1         0         2         1        0
  PLCZ1 WILD-TYPE        1        3        11        49         1        3
D273V3, multiclass
                 vv
clus              T1+T2 T3+T4
  PLCZ1 MUTATED       1     3
  PLCZ1 WILD-TYPE     5    63
D273V4, multiclass
       clus
vv      PLCZ1 MUTATED PLCZ1 WILD-TYPE
  T1+T2             1               5
  T3+T4             3              63
D273V5, binary
                 cls
clus               0  1
  PLCZ1 MUTATED    2  2
  PLCZ1 WILD-TYPE 15 52
[1] "tbl2"
                 cls
clus              [,1] [,2]
  PLCZ1 MUTATED      2    2
  PLCZ1 WILD-TYPE   15   52
   clus
vv  PLCZ1 MUTATED PLCZ1 WILD-TYPE
  0             2              15
  1             2              52
                 vv
clus              M0 M1 MX
  PLCZ1 MUTATED    2  0  2
  PLCZ1 WILD-TYPE 37  3 28
D273V6, multiclass
    clus
vv   PLCZ1 MUTATED PLCZ1 WILD-TYPE
  M0             2              37
  M1             0               3
  MX             2              28
D273V7, binary
                 cls
clus               0  1
  PLCZ1 MUTATED    2  2
  PLCZ1 WILD-TYPE 34 34
[1] "tbl2"
                 cls
clus              [,1] [,2]
  PLCZ1 MUTATED      2    2
  PLCZ1 WILD-TYPE   34   34
        clus
vv       PLCZ1 MUTATED PLCZ1 WILD-TYPE
  FEMALE             2              34
  MALE               2              34
                 vv
clus              PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  PLCZ1 MUTATED                                     4
  PLCZ1 WILD-TYPE                                  61
                 vv
clus              PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  PLCZ1 MUTATED                                       0
  PLCZ1 WILD-TYPE                                     4
                 vv
clus              PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  PLCZ1 MUTATED                                                  0
  PLCZ1 WILD-TYPE                                                2
D273V8, multiclass
                                                  clus
vv                                                 PLCZ1 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                          4
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                        0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA             0
                                                  clus
vv                                                 PLCZ1 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                           61
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                          4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA               2
D273V9, continuous
[1] "Remove cluster labels:" "PLCZ1 MUTATED"         
clus
  PLCZ1 MUTATED PLCZ1 WILD-TYPE 
              1              21 
     TCGA-F2-6880      TCGA-FB-A4P5      TCGA-FB-A4P6      TCGA-FB-A5VM 
"PLCZ1 WILD-TYPE" "PLCZ1 WILD-TYPE" "PLCZ1 WILD-TYPE" "PLCZ1 WILD-TYPE" 
     TCGA-FB-A78T      TCGA-FB-A7DR      TCGA-H6-A45N      TCGA-H8-A6C1 
"PLCZ1 WILD-TYPE" "PLCZ1 WILD-TYPE" "PLCZ1 WILD-TYPE" "PLCZ1 WILD-TYPE" 
     TCGA-IB-7644      TCGA-IB-7649      TCGA-IB-7651      TCGA-IB-7885 
"PLCZ1 WILD-TYPE" "PLCZ1 WILD-TYPE" "PLCZ1 WILD-TYPE" "PLCZ1 WILD-TYPE" 
     TCGA-IB-7886      TCGA-IB-7887      TCGA-IB-7891      TCGA-IB-8126 
"PLCZ1 WILD-TYPE" "PLCZ1 WILD-TYPE" "PLCZ1 WILD-TYPE" "PLCZ1 WILD-TYPE" 
     TCGA-IB-8127      TCGA-IB-A5SS      TCGA-IB-A6UG      TCGA-LB-A7SX 
"PLCZ1 WILD-TYPE" "PLCZ1 WILD-TYPE" "PLCZ1 WILD-TYPE" "PLCZ1 WILD-TYPE" 
     TCGA-OE-A75W 
"PLCZ1 WILD-TYPE" 
D273V10, continuous
[1] "Remove cluster labels:" "PLCZ1 MUTATED"         
clus
  PLCZ1 MUTATED PLCZ1 WILD-TYPE 
              1              18 
     TCGA-FB-A4P5      TCGA-FB-A4P6      TCGA-FB-A5VM      TCGA-FB-A78T 
"PLCZ1 WILD-TYPE" "PLCZ1 WILD-TYPE" "PLCZ1 WILD-TYPE" "PLCZ1 WILD-TYPE" 
     TCGA-FB-A7DR      TCGA-H8-A6C1      TCGA-IB-7644      TCGA-IB-7649 
"PLCZ1 WILD-TYPE" "PLCZ1 WILD-TYPE" "PLCZ1 WILD-TYPE" "PLCZ1 WILD-TYPE" 
     TCGA-IB-7651      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7891 
"PLCZ1 WILD-TYPE" "PLCZ1 WILD-TYPE" "PLCZ1 WILD-TYPE" "PLCZ1 WILD-TYPE" 
     TCGA-IB-8126      TCGA-IB-8127      TCGA-IB-A5SS      TCGA-IB-A6UG 
"PLCZ1 WILD-TYPE" "PLCZ1 WILD-TYPE" "PLCZ1 WILD-TYPE" "PLCZ1 WILD-TYPE" 
     TCGA-LB-A7SX      TCGA-OE-A75W 
"PLCZ1 WILD-TYPE" "PLCZ1 WILD-TYPE" 
                 vv
clus              R0 R1 RX
  PLCZ1 MUTATED    4  0  0
  PLCZ1 WILD-TYPE 38 24  2
D273V11, multiclass
    clus
vv   PLCZ1 MUTATED PLCZ1 WILD-TYPE
  R0             4              38
  R1             0              24
  RX             0               2
D273V12, continuous

Clustering(274) Variable = CDC25A MUTATION ANALYSIS
D274V1, survival
                  sevent
clus2               0  1
  CDC25A MUTATED    1  1
  CDC25A WILD-TYPE 39 28
  CDC25A MUTATED CDC25A WILD-TYPE 
               2               67 
  CDC25A MUTATED CDC25A WILD-TYPE 
               1               28 
$`CDC25A MUTATED`
TCGA-H6-8124 TCGA-HZ-8005 
       12.89         3.95 

$`CDC25A WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P5 TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR 
        0.13        11.93        12.66         2.47         0.03         5.46 
TCGA-FZ-5920 TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7289 
        2.01        36.20        20.81         7.66        13.02         7.89 
TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 
        0.92         0.66         0.13         0.26        12.13        11.87 
TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8315 TCGA-HZ-8317 
        0.26         0.62         0.79         0.69         0.92         0.53 
TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK 
        0.16         2.99         0.76         0.95         6.38         1.51 
TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7651 
       11.41        49.38         4.77        21.90        15.35        19.82 
TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 
       15.65        27.98         4.04         3.62        43.79        15.81 
TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-8127 
       19.66        16.04         3.85        15.98         0.56        17.16 
TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG 
       10.82         9.86         7.20        15.12         0.26         1.35 
TCGA-LB-A7SX TCGA-OE-A75W TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E 
        4.18         3.62         8.12        13.68        16.80        14.14 
TCGA-US-A77J 
       18.67 

  CDC25A MUTATED CDC25A WILD-TYPE 
            3.95             0.03 
  CDC25A MUTATED CDC25A WILD-TYPE 
           12.89            49.38 
  CDC25A MUTATED CDC25A WILD-TYPE 
            8.42             7.66 
[1] "4.0 - 12.9 (8.4)" "0.0 - 49.4 (7.7)"
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
"CDC25A WILD-TYPE" "CDC25A WILD-TYPE" "CDC25A WILD-TYPE" "CDC25A WILD-TYPE" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"CDC25A WILD-TYPE" "CDC25A WILD-TYPE" "CDC25A WILD-TYPE" "CDC25A WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
"CDC25A WILD-TYPE" "CDC25A WILD-TYPE" "CDC25A WILD-TYPE" "CDC25A WILD-TYPE" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"CDC25A WILD-TYPE" "CDC25A WILD-TYPE" "CDC25A WILD-TYPE"   "CDC25A MUTATED" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
"CDC25A WILD-TYPE" "CDC25A WILD-TYPE" "CDC25A WILD-TYPE" "CDC25A WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
"CDC25A WILD-TYPE" "CDC25A WILD-TYPE" "CDC25A WILD-TYPE" "CDC25A WILD-TYPE" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"CDC25A WILD-TYPE" "CDC25A WILD-TYPE" "CDC25A WILD-TYPE" "CDC25A WILD-TYPE" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
"CDC25A WILD-TYPE"   "CDC25A MUTATED" "CDC25A WILD-TYPE" "CDC25A WILD-TYPE" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
"CDC25A WILD-TYPE" "CDC25A WILD-TYPE" "CDC25A WILD-TYPE" "CDC25A WILD-TYPE" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
"CDC25A WILD-TYPE" "CDC25A WILD-TYPE" "CDC25A WILD-TYPE" "CDC25A WILD-TYPE" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
"CDC25A WILD-TYPE" "CDC25A WILD-TYPE" "CDC25A WILD-TYPE" "CDC25A WILD-TYPE" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
"CDC25A WILD-TYPE" "CDC25A WILD-TYPE" "CDC25A WILD-TYPE" "CDC25A WILD-TYPE" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
"CDC25A WILD-TYPE" "CDC25A WILD-TYPE" "CDC25A WILD-TYPE" "CDC25A WILD-TYPE" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
"CDC25A WILD-TYPE" "CDC25A WILD-TYPE" "CDC25A WILD-TYPE" "CDC25A WILD-TYPE" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"CDC25A WILD-TYPE" "CDC25A WILD-TYPE" "CDC25A WILD-TYPE" "CDC25A WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"CDC25A WILD-TYPE" "CDC25A WILD-TYPE" "CDC25A WILD-TYPE" "CDC25A WILD-TYPE" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
"CDC25A WILD-TYPE" "CDC25A WILD-TYPE" "CDC25A WILD-TYPE" "CDC25A WILD-TYPE" 
      TCGA-US-A77J 
"CDC25A WILD-TYPE" 
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
"CDC25A WILD-TYPE" "CDC25A WILD-TYPE" "CDC25A WILD-TYPE" "CDC25A WILD-TYPE" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"CDC25A WILD-TYPE" "CDC25A WILD-TYPE" "CDC25A WILD-TYPE" "CDC25A WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
"CDC25A WILD-TYPE" "CDC25A WILD-TYPE" "CDC25A WILD-TYPE" "CDC25A WILD-TYPE" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"CDC25A WILD-TYPE" "CDC25A WILD-TYPE" "CDC25A WILD-TYPE"   "CDC25A MUTATED" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
"CDC25A WILD-TYPE" "CDC25A WILD-TYPE" "CDC25A WILD-TYPE" "CDC25A WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
"CDC25A WILD-TYPE" "CDC25A WILD-TYPE" "CDC25A WILD-TYPE" "CDC25A WILD-TYPE" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"CDC25A WILD-TYPE" "CDC25A WILD-TYPE" "CDC25A WILD-TYPE" "CDC25A WILD-TYPE" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
"CDC25A WILD-TYPE"   "CDC25A MUTATED" "CDC25A WILD-TYPE" "CDC25A WILD-TYPE" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
"CDC25A WILD-TYPE" "CDC25A WILD-TYPE" "CDC25A WILD-TYPE" "CDC25A WILD-TYPE" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
"CDC25A WILD-TYPE" "CDC25A WILD-TYPE" "CDC25A WILD-TYPE" "CDC25A WILD-TYPE" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
"CDC25A WILD-TYPE" "CDC25A WILD-TYPE" "CDC25A WILD-TYPE" "CDC25A WILD-TYPE" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
"CDC25A WILD-TYPE" "CDC25A WILD-TYPE" "CDC25A WILD-TYPE" "CDC25A WILD-TYPE" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
"CDC25A WILD-TYPE" "CDC25A WILD-TYPE" "CDC25A WILD-TYPE" "CDC25A WILD-TYPE" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
"CDC25A WILD-TYPE" "CDC25A WILD-TYPE" "CDC25A WILD-TYPE" "CDC25A WILD-TYPE" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"CDC25A WILD-TYPE" "CDC25A WILD-TYPE" "CDC25A WILD-TYPE" "CDC25A WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"CDC25A WILD-TYPE" "CDC25A WILD-TYPE" "CDC25A WILD-TYPE" "CDC25A WILD-TYPE" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
"CDC25A WILD-TYPE" "CDC25A WILD-TYPE" "CDC25A WILD-TYPE" "CDC25A WILD-TYPE" 
      TCGA-US-A77J 
"CDC25A WILD-TYPE" 
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
"CDC25A WILD-TYPE" "CDC25A WILD-TYPE" "CDC25A WILD-TYPE" "CDC25A WILD-TYPE" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"CDC25A WILD-TYPE" "CDC25A WILD-TYPE" "CDC25A WILD-TYPE" "CDC25A WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
"CDC25A WILD-TYPE" "CDC25A WILD-TYPE" "CDC25A WILD-TYPE" "CDC25A WILD-TYPE" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"CDC25A WILD-TYPE" "CDC25A WILD-TYPE" "CDC25A WILD-TYPE"   "CDC25A MUTATED" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
"CDC25A WILD-TYPE" "CDC25A WILD-TYPE" "CDC25A WILD-TYPE" "CDC25A WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
"CDC25A WILD-TYPE" "CDC25A WILD-TYPE" "CDC25A WILD-TYPE" "CDC25A WILD-TYPE" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"CDC25A WILD-TYPE" "CDC25A WILD-TYPE" "CDC25A WILD-TYPE" "CDC25A WILD-TYPE" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
"CDC25A WILD-TYPE"   "CDC25A MUTATED" "CDC25A WILD-TYPE" "CDC25A WILD-TYPE" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
"CDC25A WILD-TYPE" "CDC25A WILD-TYPE" "CDC25A WILD-TYPE" "CDC25A WILD-TYPE" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
"CDC25A WILD-TYPE" "CDC25A WILD-TYPE" "CDC25A WILD-TYPE" "CDC25A WILD-TYPE" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
"CDC25A WILD-TYPE" "CDC25A WILD-TYPE" "CDC25A WILD-TYPE" "CDC25A WILD-TYPE" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
"CDC25A WILD-TYPE" "CDC25A WILD-TYPE" "CDC25A WILD-TYPE" "CDC25A WILD-TYPE" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
"CDC25A WILD-TYPE" "CDC25A WILD-TYPE" "CDC25A WILD-TYPE" "CDC25A WILD-TYPE" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
"CDC25A WILD-TYPE" "CDC25A WILD-TYPE" "CDC25A WILD-TYPE" "CDC25A WILD-TYPE" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"CDC25A WILD-TYPE" "CDC25A WILD-TYPE" "CDC25A WILD-TYPE" "CDC25A WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"CDC25A WILD-TYPE" "CDC25A WILD-TYPE" "CDC25A WILD-TYPE" "CDC25A WILD-TYPE" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
"CDC25A WILD-TYPE" "CDC25A WILD-TYPE" "CDC25A WILD-TYPE" "CDC25A WILD-TYPE" 
      TCGA-US-A77J 
"CDC25A WILD-TYPE" 
[1] "Remove cluster labels:" "CDC25A MUTATED"        
clus
  CDC25A MUTATED CDC25A WILD-TYPE 
               2               67 
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
"CDC25A WILD-TYPE" "CDC25A WILD-TYPE" "CDC25A WILD-TYPE" "CDC25A WILD-TYPE" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"CDC25A WILD-TYPE" "CDC25A WILD-TYPE" "CDC25A WILD-TYPE" "CDC25A WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
"CDC25A WILD-TYPE" "CDC25A WILD-TYPE" "CDC25A WILD-TYPE" "CDC25A WILD-TYPE" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-A45N 
"CDC25A WILD-TYPE" "CDC25A WILD-TYPE" "CDC25A WILD-TYPE" "CDC25A WILD-TYPE" 
      TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918       TCGA-HZ-7919 
"CDC25A WILD-TYPE" "CDC25A WILD-TYPE" "CDC25A WILD-TYPE" "CDC25A WILD-TYPE" 
      TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924       TCGA-HZ-7925 
"CDC25A WILD-TYPE" "CDC25A WILD-TYPE" "CDC25A WILD-TYPE" "CDC25A WILD-TYPE" 
      TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002       TCGA-HZ-8003 
"CDC25A WILD-TYPE" "CDC25A WILD-TYPE" "CDC25A WILD-TYPE" "CDC25A WILD-TYPE" 
      TCGA-HZ-8315       TCGA-HZ-8317       TCGA-HZ-8636       TCGA-HZ-8638 
"CDC25A WILD-TYPE" "CDC25A WILD-TYPE" "CDC25A WILD-TYPE" "CDC25A WILD-TYPE" 
      TCGA-HZ-A49G       TCGA-HZ-A49H       TCGA-HZ-A4BH       TCGA-HZ-A4BK 
"CDC25A WILD-TYPE" "CDC25A WILD-TYPE" "CDC25A WILD-TYPE" "CDC25A WILD-TYPE" 
      TCGA-IB-7644       TCGA-IB-7645       TCGA-IB-7646       TCGA-IB-7647 
"CDC25A WILD-TYPE" "CDC25A WILD-TYPE" "CDC25A WILD-TYPE" "CDC25A WILD-TYPE" 
      TCGA-IB-7649       TCGA-IB-7651       TCGA-IB-7652       TCGA-IB-7885 
"CDC25A WILD-TYPE" "CDC25A WILD-TYPE" "CDC25A WILD-TYPE" "CDC25A WILD-TYPE" 
      TCGA-IB-7886       TCGA-IB-7887       TCGA-IB-7888       TCGA-IB-7889 
"CDC25A WILD-TYPE" "CDC25A WILD-TYPE" "CDC25A WILD-TYPE" "CDC25A WILD-TYPE" 
      TCGA-IB-7890       TCGA-IB-7891       TCGA-IB-7893       TCGA-IB-7897 
"CDC25A WILD-TYPE" "CDC25A WILD-TYPE" "CDC25A WILD-TYPE" "CDC25A WILD-TYPE" 
      TCGA-IB-8126       TCGA-IB-8127       TCGA-IB-A5SO       TCGA-IB-A5SP 
"CDC25A WILD-TYPE" "CDC25A WILD-TYPE" "CDC25A WILD-TYPE" "CDC25A WILD-TYPE" 
      TCGA-IB-A5SQ       TCGA-IB-A5SS       TCGA-IB-A5ST       TCGA-IB-A6UG 
"CDC25A WILD-TYPE" "CDC25A WILD-TYPE" "CDC25A WILD-TYPE" "CDC25A WILD-TYPE" 
      TCGA-LB-A7SX       TCGA-OE-A75W       TCGA-PZ-A5RE       TCGA-Q3-A5QY 
"CDC25A WILD-TYPE" "CDC25A WILD-TYPE" "CDC25A WILD-TYPE" "CDC25A WILD-TYPE" 
      TCGA-US-A779       TCGA-US-A77E       TCGA-US-A77J 
"CDC25A WILD-TYPE" "CDC25A WILD-TYPE" "CDC25A WILD-TYPE" 
D274V2, continuous
                  vv
clus               STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  CDC25A MUTATED          0        1         0         2         0        0
  CDC25A WILD-TYPE        1        3        11        49         2        3
D274V3, multiclass
                  vv
clus               T1+T2 T3+T4
  CDC25A MUTATED       1     2
  CDC25A WILD-TYPE     5    64
D274V4, multiclass
       clus
vv      CDC25A MUTATED CDC25A WILD-TYPE
  T1+T2              1                5
  T3+T4              2               64
D274V5, binary
                  cls
clus                0  1
  CDC25A MUTATED    1  2
  CDC25A WILD-TYPE 16 52
[1] "tbl2"
                  cls
clus               [,1] [,2]
  CDC25A MUTATED      1    2
  CDC25A WILD-TYPE   16   52
   clus
vv  CDC25A MUTATED CDC25A WILD-TYPE
  0              1               16
  1              2               52
                  vv
clus               M0 M1 MX
  CDC25A MUTATED    1  0  2
  CDC25A WILD-TYPE 38  3 28
D274V6, multiclass
    clus
vv   CDC25A MUTATED CDC25A WILD-TYPE
  M0              1               38
  M1              0                3
  MX              2               28
D274V7, binary
                  cls
clus                0  1
  CDC25A MUTATED    1  2
  CDC25A WILD-TYPE 35 34
[1] "tbl2"
                  cls
clus               [,1] [,2]
  CDC25A MUTATED      1    2
  CDC25A WILD-TYPE   35   34
        clus
vv       CDC25A MUTATED CDC25A WILD-TYPE
  FEMALE              1               35
  MALE                2               34
                  vv
clus               PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  CDC25A MUTATED                                     3
  CDC25A WILD-TYPE                                  62
                  vv
clus               PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  CDC25A MUTATED                                       0
  CDC25A WILD-TYPE                                     4
                  vv
clus               PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  CDC25A MUTATED                                                  0
  CDC25A WILD-TYPE                                                2
D274V8, multiclass
                                                  clus
vv                                                 CDC25A MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                           3
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                         0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA              0
                                                  clus
vv                                                 CDC25A WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                            62
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                           4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                2
D274V9, continuous
[1] "Remove cluster labels:" "CDC25A MUTATED"        
clus
  CDC25A MUTATED CDC25A WILD-TYPE 
               1               21 
      TCGA-F2-6880       TCGA-FB-A4P5       TCGA-FB-A4P6       TCGA-FB-A5VM 
"CDC25A WILD-TYPE" "CDC25A WILD-TYPE" "CDC25A WILD-TYPE" "CDC25A WILD-TYPE" 
      TCGA-FB-A78T       TCGA-FB-A7DR       TCGA-H6-A45N       TCGA-H8-A6C1 
"CDC25A WILD-TYPE" "CDC25A WILD-TYPE" "CDC25A WILD-TYPE" "CDC25A WILD-TYPE" 
      TCGA-IB-7644       TCGA-IB-7649       TCGA-IB-7651       TCGA-IB-7885 
"CDC25A WILD-TYPE" "CDC25A WILD-TYPE" "CDC25A WILD-TYPE" "CDC25A WILD-TYPE" 
      TCGA-IB-7886       TCGA-IB-7887       TCGA-IB-7891       TCGA-IB-8126 
"CDC25A WILD-TYPE" "CDC25A WILD-TYPE" "CDC25A WILD-TYPE" "CDC25A WILD-TYPE" 
      TCGA-IB-8127       TCGA-IB-A5SS       TCGA-IB-A6UG       TCGA-LB-A7SX 
"CDC25A WILD-TYPE" "CDC25A WILD-TYPE" "CDC25A WILD-TYPE" "CDC25A WILD-TYPE" 
      TCGA-OE-A75W 
"CDC25A WILD-TYPE" 
D274V10, continuous
[1] "Remove cluster labels:" "CDC25A MUTATED"        
clus
  CDC25A MUTATED CDC25A WILD-TYPE 
               1               18 
      TCGA-FB-A4P5       TCGA-FB-A4P6       TCGA-FB-A5VM       TCGA-FB-A78T 
"CDC25A WILD-TYPE" "CDC25A WILD-TYPE" "CDC25A WILD-TYPE" "CDC25A WILD-TYPE" 
      TCGA-FB-A7DR       TCGA-H8-A6C1       TCGA-IB-7644       TCGA-IB-7649 
"CDC25A WILD-TYPE" "CDC25A WILD-TYPE" "CDC25A WILD-TYPE" "CDC25A WILD-TYPE" 
      TCGA-IB-7651       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7891 
"CDC25A WILD-TYPE" "CDC25A WILD-TYPE" "CDC25A WILD-TYPE" "CDC25A WILD-TYPE" 
      TCGA-IB-8126       TCGA-IB-8127       TCGA-IB-A5SS       TCGA-IB-A6UG 
"CDC25A WILD-TYPE" "CDC25A WILD-TYPE" "CDC25A WILD-TYPE" "CDC25A WILD-TYPE" 
      TCGA-LB-A7SX       TCGA-OE-A75W 
"CDC25A WILD-TYPE" "CDC25A WILD-TYPE" 
                  vv
clus               R0 R1 RX
  CDC25A MUTATED    2  1  0
  CDC25A WILD-TYPE 40 23  2
D274V11, multiclass
    clus
vv   CDC25A MUTATED CDC25A WILD-TYPE
  R0              2               40
  R1              1               23
  RX              0                2
D274V12, continuous

Clustering(275) Variable = UNC5D MUTATION ANALYSIS
D275V1, survival
                 sevent
clus2              0  1
  UNC5D MUTATED    4  3
  UNC5D WILD-TYPE 36 26
  UNC5D MUTATED UNC5D WILD-TYPE 
              7              62 
  UNC5D MUTATED UNC5D WILD-TYPE 
              3              26 
$`UNC5D MUTATED`
TCGA-F2-6880 TCGA-IB-7644 TCGA-IB-7646 TCGA-IB-7651 TCGA-IB-7891 TCGA-IB-8126 
        9.70        11.41         4.77        19.82        16.04         0.56 
TCGA-LB-A7SX 
        4.18 

$`UNC5D WILD-TYPE`
TCGA-F2-6879 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H TCGA-FB-A4P5 
       10.98        11.84         7.10         5.03        19.27         0.13 
TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR TCGA-FZ-5920 
       11.93        12.66         2.47         0.03         5.46         2.01 
TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7289 
       36.20        20.81        12.89         7.66        13.02         7.89 
TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 
        0.92         0.66         0.13         0.26        12.13        11.87 
TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 
        0.26         0.62         0.79         0.69         3.95         0.92 
TCGA-HZ-8317 TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH 
        0.53         0.16         2.99         0.76         0.95         6.38 
TCGA-HZ-A4BK TCGA-IB-7645 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7652 TCGA-IB-7885 
        1.51        49.38        21.90        15.35        15.65        27.98 
TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7893 
        4.04         3.62        43.79        15.81        19.66         3.85 
TCGA-IB-7897 TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS 
       15.98        17.16        10.82         9.86         7.20        15.12 
TCGA-IB-A5ST TCGA-IB-A6UG TCGA-OE-A75W TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 
        0.26         1.35         3.62         8.12        13.68        16.80 
TCGA-US-A77E TCGA-US-A77J 
       14.14        18.67 

  UNC5D MUTATED UNC5D WILD-TYPE 
           0.56            0.03 
  UNC5D MUTATED UNC5D WILD-TYPE 
          19.82           49.38 
  UNC5D MUTATED UNC5D WILD-TYPE 
           9.70            7.43 
[1] "0.6 - 19.8 (9.7)" "0.0 - 49.4 (7.4)"
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"UNC5D WILD-TYPE"   "UNC5D MUTATED" "UNC5D WILD-TYPE" "UNC5D WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"UNC5D WILD-TYPE" "UNC5D WILD-TYPE" "UNC5D WILD-TYPE" "UNC5D WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"UNC5D WILD-TYPE" "UNC5D WILD-TYPE" "UNC5D WILD-TYPE" "UNC5D WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"UNC5D WILD-TYPE" "UNC5D WILD-TYPE" "UNC5D WILD-TYPE" "UNC5D WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"UNC5D WILD-TYPE" "UNC5D WILD-TYPE" "UNC5D WILD-TYPE" "UNC5D WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"UNC5D WILD-TYPE" "UNC5D WILD-TYPE" "UNC5D WILD-TYPE" "UNC5D WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"UNC5D WILD-TYPE" "UNC5D WILD-TYPE" "UNC5D WILD-TYPE" "UNC5D WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"UNC5D WILD-TYPE" "UNC5D WILD-TYPE" "UNC5D WILD-TYPE" "UNC5D WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"UNC5D WILD-TYPE" "UNC5D WILD-TYPE" "UNC5D WILD-TYPE" "UNC5D WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"UNC5D WILD-TYPE" "UNC5D WILD-TYPE"   "UNC5D MUTATED" "UNC5D WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
  "UNC5D MUTATED" "UNC5D WILD-TYPE" "UNC5D WILD-TYPE"   "UNC5D MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"UNC5D WILD-TYPE" "UNC5D WILD-TYPE" "UNC5D WILD-TYPE" "UNC5D WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"UNC5D WILD-TYPE" "UNC5D WILD-TYPE" "UNC5D WILD-TYPE"   "UNC5D MUTATED" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"UNC5D WILD-TYPE" "UNC5D WILD-TYPE"   "UNC5D MUTATED" "UNC5D WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"UNC5D WILD-TYPE" "UNC5D WILD-TYPE" "UNC5D WILD-TYPE" "UNC5D WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"UNC5D WILD-TYPE" "UNC5D WILD-TYPE"   "UNC5D MUTATED" "UNC5D WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"UNC5D WILD-TYPE" "UNC5D WILD-TYPE" "UNC5D WILD-TYPE" "UNC5D WILD-TYPE" 
     TCGA-US-A77J 
"UNC5D WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"UNC5D WILD-TYPE"   "UNC5D MUTATED" "UNC5D WILD-TYPE" "UNC5D WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"UNC5D WILD-TYPE" "UNC5D WILD-TYPE" "UNC5D WILD-TYPE" "UNC5D WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"UNC5D WILD-TYPE" "UNC5D WILD-TYPE" "UNC5D WILD-TYPE" "UNC5D WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"UNC5D WILD-TYPE" "UNC5D WILD-TYPE" "UNC5D WILD-TYPE" "UNC5D WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"UNC5D WILD-TYPE" "UNC5D WILD-TYPE" "UNC5D WILD-TYPE" "UNC5D WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"UNC5D WILD-TYPE" "UNC5D WILD-TYPE" "UNC5D WILD-TYPE" "UNC5D WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"UNC5D WILD-TYPE" "UNC5D WILD-TYPE" "UNC5D WILD-TYPE" "UNC5D WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"UNC5D WILD-TYPE" "UNC5D WILD-TYPE" "UNC5D WILD-TYPE" "UNC5D WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"UNC5D WILD-TYPE" "UNC5D WILD-TYPE" "UNC5D WILD-TYPE" "UNC5D WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"UNC5D WILD-TYPE" "UNC5D WILD-TYPE"   "UNC5D MUTATED" "UNC5D WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
  "UNC5D MUTATED" "UNC5D WILD-TYPE" "UNC5D WILD-TYPE"   "UNC5D MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"UNC5D WILD-TYPE" "UNC5D WILD-TYPE" "UNC5D WILD-TYPE" "UNC5D WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"UNC5D WILD-TYPE" "UNC5D WILD-TYPE" "UNC5D WILD-TYPE"   "UNC5D MUTATED" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"UNC5D WILD-TYPE" "UNC5D WILD-TYPE"   "UNC5D MUTATED" "UNC5D WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"UNC5D WILD-TYPE" "UNC5D WILD-TYPE" "UNC5D WILD-TYPE" "UNC5D WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"UNC5D WILD-TYPE" "UNC5D WILD-TYPE"   "UNC5D MUTATED" "UNC5D WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"UNC5D WILD-TYPE" "UNC5D WILD-TYPE" "UNC5D WILD-TYPE" "UNC5D WILD-TYPE" 
     TCGA-US-A77J 
"UNC5D WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"UNC5D WILD-TYPE"   "UNC5D MUTATED" "UNC5D WILD-TYPE" "UNC5D WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"UNC5D WILD-TYPE" "UNC5D WILD-TYPE" "UNC5D WILD-TYPE" "UNC5D WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"UNC5D WILD-TYPE" "UNC5D WILD-TYPE" "UNC5D WILD-TYPE" "UNC5D WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"UNC5D WILD-TYPE" "UNC5D WILD-TYPE" "UNC5D WILD-TYPE" "UNC5D WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"UNC5D WILD-TYPE" "UNC5D WILD-TYPE" "UNC5D WILD-TYPE" "UNC5D WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"UNC5D WILD-TYPE" "UNC5D WILD-TYPE" "UNC5D WILD-TYPE" "UNC5D WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"UNC5D WILD-TYPE" "UNC5D WILD-TYPE" "UNC5D WILD-TYPE" "UNC5D WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"UNC5D WILD-TYPE" "UNC5D WILD-TYPE" "UNC5D WILD-TYPE" "UNC5D WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"UNC5D WILD-TYPE" "UNC5D WILD-TYPE" "UNC5D WILD-TYPE" "UNC5D WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"UNC5D WILD-TYPE" "UNC5D WILD-TYPE"   "UNC5D MUTATED" "UNC5D WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
  "UNC5D MUTATED" "UNC5D WILD-TYPE" "UNC5D WILD-TYPE"   "UNC5D MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"UNC5D WILD-TYPE" "UNC5D WILD-TYPE" "UNC5D WILD-TYPE" "UNC5D WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"UNC5D WILD-TYPE" "UNC5D WILD-TYPE" "UNC5D WILD-TYPE"   "UNC5D MUTATED" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"UNC5D WILD-TYPE" "UNC5D WILD-TYPE"   "UNC5D MUTATED" "UNC5D WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"UNC5D WILD-TYPE" "UNC5D WILD-TYPE" "UNC5D WILD-TYPE" "UNC5D WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"UNC5D WILD-TYPE" "UNC5D WILD-TYPE"   "UNC5D MUTATED" "UNC5D WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"UNC5D WILD-TYPE" "UNC5D WILD-TYPE" "UNC5D WILD-TYPE" "UNC5D WILD-TYPE" 
     TCGA-US-A77J 
"UNC5D WILD-TYPE" 
[1] "hr=" "1.1"
D275V2, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  UNC5D MUTATED          0        0         0         5         1        1
  UNC5D WILD-TYPE        1        4        11        46         1        2
D275V3, multiclass
                 vv
clus              T1+T2 T3+T4
  UNC5D MUTATED       0     7
  UNC5D WILD-TYPE     6    59
D275V4, multiclass
       clus
vv      UNC5D MUTATED UNC5D WILD-TYPE
  T1+T2             0               6
  T3+T4             7              59
D275V5, binary
                 cls
clus               0  1
  UNC5D MUTATED    0  7
  UNC5D WILD-TYPE 17 47
[1] "tbl2"
                 cls
clus              [,1] [,2]
  UNC5D MUTATED      0    7
  UNC5D WILD-TYPE   17   47
   clus
vv  UNC5D MUTATED UNC5D WILD-TYPE
  0             0              17
  1             7              47
                 vv
clus              M0 M1 MX
  UNC5D MUTATED    5  1  1
  UNC5D WILD-TYPE 34  2 29
D275V6, multiclass
    clus
vv   UNC5D MUTATED UNC5D WILD-TYPE
  M0             5              34
  M1             1               2
  MX             1              29
D275V7, binary
                 cls
clus               0  1
  UNC5D MUTATED    4  3
  UNC5D WILD-TYPE 32 33
[1] "tbl2"
                 cls
clus              [,1] [,2]
  UNC5D MUTATED      4    3
  UNC5D WILD-TYPE   32   33
        clus
vv       UNC5D MUTATED UNC5D WILD-TYPE
  FEMALE             4              32
  MALE               3              33
                 vv
clus              PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  UNC5D MUTATED                                     7
  UNC5D WILD-TYPE                                  58
                 vv
clus              PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  UNC5D MUTATED                                       0
  UNC5D WILD-TYPE                                     4
                 vv
clus              PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  UNC5D MUTATED                                                  0
  UNC5D WILD-TYPE                                                2
D275V8, multiclass
                                                  clus
vv                                                 UNC5D MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                          7
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                        0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA             0
                                                  clus
vv                                                 UNC5D WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                           58
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                          4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA               2
D275V9, continuous
D275V10, continuous
                 vv
clus              R0 R1 RX
  UNC5D MUTATED    3  4  0
  UNC5D WILD-TYPE 39 20  2
D275V11, multiclass
    clus
vv   UNC5D MUTATED UNC5D WILD-TYPE
  R0             3              39
  R1             4              20
  RX             0               2
D275V12, continuous

Clustering(276) Variable = CPSF3 MUTATION ANALYSIS
D276V1, survival
                 sevent
clus2              0  1
  CPSF3 MUTATED    1  2
  CPSF3 WILD-TYPE 39 27
  CPSF3 MUTATED CPSF3 WILD-TYPE 
              3              66 
  CPSF3 MUTATED CPSF3 WILD-TYPE 
              2              27 
$`CPSF3 MUTATED`
TCGA-IB-7649 TCGA-IB-7891 TCGA-IB-7897 
       15.35        16.04        15.98 

$`CPSF3 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P5 TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR 
        0.13        11.93        12.66         2.47         0.03         5.46 
TCGA-FZ-5920 TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 
        2.01        36.20        20.81        12.89         7.66        13.02 
TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 
        7.89         0.92         0.66         0.13         0.26        12.13 
TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 
       11.87         0.26         0.62         0.79         0.69         3.95 
TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H 
        0.92         0.53         0.16         2.99         0.76         0.95 
TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 
        6.38         1.51        11.41        49.38         4.77        21.90 
TCGA-IB-7651 TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7888 
       19.82        15.65        27.98         4.04         3.62        43.79 
TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7893 TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO 
       15.81        19.66         3.85         0.56        17.16        10.82 
TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX 
        9.86         7.20        15.12         0.26         1.35         4.18 
TCGA-OE-A75W TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
        3.62         8.12        13.68        16.80        14.14        18.67 

  CPSF3 MUTATED CPSF3 WILD-TYPE 
          15.35            0.03 
  CPSF3 MUTATED CPSF3 WILD-TYPE 
          16.04           49.38 
  CPSF3 MUTATED CPSF3 WILD-TYPE 
          15.98            7.15 
[1] "15.3 - 16.0 (16.0)" "0.0 - 49.4 (7.2)"  
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"CPSF3 WILD-TYPE" "CPSF3 WILD-TYPE" "CPSF3 WILD-TYPE" "CPSF3 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"CPSF3 WILD-TYPE" "CPSF3 WILD-TYPE" "CPSF3 WILD-TYPE" "CPSF3 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"CPSF3 WILD-TYPE" "CPSF3 WILD-TYPE" "CPSF3 WILD-TYPE" "CPSF3 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"CPSF3 WILD-TYPE" "CPSF3 WILD-TYPE" "CPSF3 WILD-TYPE" "CPSF3 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"CPSF3 WILD-TYPE" "CPSF3 WILD-TYPE" "CPSF3 WILD-TYPE" "CPSF3 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"CPSF3 WILD-TYPE" "CPSF3 WILD-TYPE" "CPSF3 WILD-TYPE" "CPSF3 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"CPSF3 WILD-TYPE" "CPSF3 WILD-TYPE" "CPSF3 WILD-TYPE" "CPSF3 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"CPSF3 WILD-TYPE" "CPSF3 WILD-TYPE" "CPSF3 WILD-TYPE" "CPSF3 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"CPSF3 WILD-TYPE" "CPSF3 WILD-TYPE" "CPSF3 WILD-TYPE" "CPSF3 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"CPSF3 WILD-TYPE" "CPSF3 WILD-TYPE" "CPSF3 WILD-TYPE" "CPSF3 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"CPSF3 WILD-TYPE" "CPSF3 WILD-TYPE"   "CPSF3 MUTATED" "CPSF3 WILD-TYPE" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"CPSF3 WILD-TYPE" "CPSF3 WILD-TYPE" "CPSF3 WILD-TYPE" "CPSF3 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"CPSF3 WILD-TYPE" "CPSF3 WILD-TYPE" "CPSF3 WILD-TYPE"   "CPSF3 MUTATED" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"CPSF3 WILD-TYPE"   "CPSF3 MUTATED" "CPSF3 WILD-TYPE" "CPSF3 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"CPSF3 WILD-TYPE" "CPSF3 WILD-TYPE" "CPSF3 WILD-TYPE" "CPSF3 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"CPSF3 WILD-TYPE" "CPSF3 WILD-TYPE" "CPSF3 WILD-TYPE" "CPSF3 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"CPSF3 WILD-TYPE" "CPSF3 WILD-TYPE" "CPSF3 WILD-TYPE" "CPSF3 WILD-TYPE" 
     TCGA-US-A77J 
"CPSF3 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"CPSF3 WILD-TYPE" "CPSF3 WILD-TYPE" "CPSF3 WILD-TYPE" "CPSF3 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"CPSF3 WILD-TYPE" "CPSF3 WILD-TYPE" "CPSF3 WILD-TYPE" "CPSF3 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"CPSF3 WILD-TYPE" "CPSF3 WILD-TYPE" "CPSF3 WILD-TYPE" "CPSF3 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"CPSF3 WILD-TYPE" "CPSF3 WILD-TYPE" "CPSF3 WILD-TYPE" "CPSF3 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"CPSF3 WILD-TYPE" "CPSF3 WILD-TYPE" "CPSF3 WILD-TYPE" "CPSF3 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"CPSF3 WILD-TYPE" "CPSF3 WILD-TYPE" "CPSF3 WILD-TYPE" "CPSF3 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"CPSF3 WILD-TYPE" "CPSF3 WILD-TYPE" "CPSF3 WILD-TYPE" "CPSF3 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"CPSF3 WILD-TYPE" "CPSF3 WILD-TYPE" "CPSF3 WILD-TYPE" "CPSF3 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"CPSF3 WILD-TYPE" "CPSF3 WILD-TYPE" "CPSF3 WILD-TYPE" "CPSF3 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"CPSF3 WILD-TYPE" "CPSF3 WILD-TYPE" "CPSF3 WILD-TYPE" "CPSF3 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"CPSF3 WILD-TYPE" "CPSF3 WILD-TYPE"   "CPSF3 MUTATED" "CPSF3 WILD-TYPE" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"CPSF3 WILD-TYPE" "CPSF3 WILD-TYPE" "CPSF3 WILD-TYPE" "CPSF3 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"CPSF3 WILD-TYPE" "CPSF3 WILD-TYPE" "CPSF3 WILD-TYPE"   "CPSF3 MUTATED" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"CPSF3 WILD-TYPE"   "CPSF3 MUTATED" "CPSF3 WILD-TYPE" "CPSF3 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"CPSF3 WILD-TYPE" "CPSF3 WILD-TYPE" "CPSF3 WILD-TYPE" "CPSF3 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"CPSF3 WILD-TYPE" "CPSF3 WILD-TYPE" "CPSF3 WILD-TYPE" "CPSF3 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"CPSF3 WILD-TYPE" "CPSF3 WILD-TYPE" "CPSF3 WILD-TYPE" "CPSF3 WILD-TYPE" 
     TCGA-US-A77J 
"CPSF3 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"CPSF3 WILD-TYPE" "CPSF3 WILD-TYPE" "CPSF3 WILD-TYPE" "CPSF3 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"CPSF3 WILD-TYPE" "CPSF3 WILD-TYPE" "CPSF3 WILD-TYPE" "CPSF3 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"CPSF3 WILD-TYPE" "CPSF3 WILD-TYPE" "CPSF3 WILD-TYPE" "CPSF3 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"CPSF3 WILD-TYPE" "CPSF3 WILD-TYPE" "CPSF3 WILD-TYPE" "CPSF3 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"CPSF3 WILD-TYPE" "CPSF3 WILD-TYPE" "CPSF3 WILD-TYPE" "CPSF3 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"CPSF3 WILD-TYPE" "CPSF3 WILD-TYPE" "CPSF3 WILD-TYPE" "CPSF3 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"CPSF3 WILD-TYPE" "CPSF3 WILD-TYPE" "CPSF3 WILD-TYPE" "CPSF3 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"CPSF3 WILD-TYPE" "CPSF3 WILD-TYPE" "CPSF3 WILD-TYPE" "CPSF3 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"CPSF3 WILD-TYPE" "CPSF3 WILD-TYPE" "CPSF3 WILD-TYPE" "CPSF3 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"CPSF3 WILD-TYPE" "CPSF3 WILD-TYPE" "CPSF3 WILD-TYPE" "CPSF3 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"CPSF3 WILD-TYPE" "CPSF3 WILD-TYPE"   "CPSF3 MUTATED" "CPSF3 WILD-TYPE" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"CPSF3 WILD-TYPE" "CPSF3 WILD-TYPE" "CPSF3 WILD-TYPE" "CPSF3 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"CPSF3 WILD-TYPE" "CPSF3 WILD-TYPE" "CPSF3 WILD-TYPE"   "CPSF3 MUTATED" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"CPSF3 WILD-TYPE"   "CPSF3 MUTATED" "CPSF3 WILD-TYPE" "CPSF3 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"CPSF3 WILD-TYPE" "CPSF3 WILD-TYPE" "CPSF3 WILD-TYPE" "CPSF3 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"CPSF3 WILD-TYPE" "CPSF3 WILD-TYPE" "CPSF3 WILD-TYPE" "CPSF3 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"CPSF3 WILD-TYPE" "CPSF3 WILD-TYPE" "CPSF3 WILD-TYPE" "CPSF3 WILD-TYPE" 
     TCGA-US-A77J 
"CPSF3 WILD-TYPE" 
[1] "hr=" "1"  
D276V2, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  CPSF3 MUTATED          0        0         0         3         0        0
  CPSF3 WILD-TYPE        1        4        11        48         2        3
D276V3, multiclass
                 vv
clus              T1+T2 T3+T4
  CPSF3 MUTATED       0     3
  CPSF3 WILD-TYPE     6    63
D276V4, multiclass
       clus
vv      CPSF3 MUTATED CPSF3 WILD-TYPE
  T1+T2             0               6
  T3+T4             3              63
D276V5, binary
                 cls
clus               0  1
  CPSF3 MUTATED    0  3
  CPSF3 WILD-TYPE 17 51
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CPSF3 MUTATED      0    3
  CPSF3 WILD-TYPE   17   51
   clus
vv  CPSF3 MUTATED CPSF3 WILD-TYPE
  0             0              17
  1             3              51
                 vv
clus              M0 M1 MX
  CPSF3 MUTATED    3  0  0
  CPSF3 WILD-TYPE 36  3 30
D276V6, multiclass
    clus
vv   CPSF3 MUTATED CPSF3 WILD-TYPE
  M0             3              36
  M1             0               3
  MX             0              30
D276V7, binary
                 cls
clus               0  1
  CPSF3 MUTATED    2  1
  CPSF3 WILD-TYPE 34 35
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CPSF3 MUTATED      2    1
  CPSF3 WILD-TYPE   34   35
        clus
vv       CPSF3 MUTATED CPSF3 WILD-TYPE
  FEMALE             2              34
  MALE               1              35
                 vv
clus              PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  CPSF3 MUTATED                                     3
  CPSF3 WILD-TYPE                                  62
                 vv
clus              PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  CPSF3 MUTATED                                       0
  CPSF3 WILD-TYPE                                     4
                 vv
clus              PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  CPSF3 MUTATED                                                  0
  CPSF3 WILD-TYPE                                                2
D276V8, multiclass
                                                  clus
vv                                                 CPSF3 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                          3
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                        0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA             0
                                                  clus
vv                                                 CPSF3 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                           62
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                          4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA               2
D276V9, continuous
[1] "Remove cluster labels:" "CPSF3 MUTATED"         
clus
  CPSF3 MUTATED CPSF3 WILD-TYPE 
              2              20 
     TCGA-F2-6880      TCGA-FB-A4P5      TCGA-FB-A4P6      TCGA-FB-A5VM 
"CPSF3 WILD-TYPE" "CPSF3 WILD-TYPE" "CPSF3 WILD-TYPE" "CPSF3 WILD-TYPE" 
     TCGA-FB-A78T      TCGA-FB-A7DR      TCGA-H6-8124      TCGA-H6-A45N 
"CPSF3 WILD-TYPE" "CPSF3 WILD-TYPE" "CPSF3 WILD-TYPE" "CPSF3 WILD-TYPE" 
     TCGA-H8-A6C1      TCGA-IB-7644      TCGA-IB-7651      TCGA-IB-7885 
"CPSF3 WILD-TYPE" "CPSF3 WILD-TYPE" "CPSF3 WILD-TYPE" "CPSF3 WILD-TYPE" 
     TCGA-IB-7886      TCGA-IB-7887      TCGA-IB-8126      TCGA-IB-8127 
"CPSF3 WILD-TYPE" "CPSF3 WILD-TYPE" "CPSF3 WILD-TYPE" "CPSF3 WILD-TYPE" 
     TCGA-IB-A5SS      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"CPSF3 WILD-TYPE" "CPSF3 WILD-TYPE" "CPSF3 WILD-TYPE" "CPSF3 WILD-TYPE" 
D276V10, continuous
[1] "Remove cluster labels:" "CPSF3 MUTATED"         
clus
  CPSF3 MUTATED CPSF3 WILD-TYPE 
              2              17 
     TCGA-FB-A4P5      TCGA-FB-A4P6      TCGA-FB-A5VM      TCGA-FB-A78T 
"CPSF3 WILD-TYPE" "CPSF3 WILD-TYPE" "CPSF3 WILD-TYPE" "CPSF3 WILD-TYPE" 
     TCGA-FB-A7DR      TCGA-H6-8124      TCGA-H8-A6C1      TCGA-IB-7644 
"CPSF3 WILD-TYPE" "CPSF3 WILD-TYPE" "CPSF3 WILD-TYPE" "CPSF3 WILD-TYPE" 
     TCGA-IB-7651      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-8126 
"CPSF3 WILD-TYPE" "CPSF3 WILD-TYPE" "CPSF3 WILD-TYPE" "CPSF3 WILD-TYPE" 
     TCGA-IB-8127      TCGA-IB-A5SS      TCGA-IB-A6UG      TCGA-LB-A7SX 
"CPSF3 WILD-TYPE" "CPSF3 WILD-TYPE" "CPSF3 WILD-TYPE" "CPSF3 WILD-TYPE" 
     TCGA-OE-A75W 
"CPSF3 WILD-TYPE" 
                 vv
clus              R0 R1 RX
  CPSF3 MUTATED    2  1  0
  CPSF3 WILD-TYPE 40 23  2
D276V11, multiclass
    clus
vv   CPSF3 MUTATED CPSF3 WILD-TYPE
  R0             2              40
  R1             1              23
  RX             0               2
D276V12, continuous

Clustering(277) Variable = TSFM MUTATION ANALYSIS
D277V1, survival
                sevent
clus2             0  1
  TSFM MUTATED    3  1
  TSFM WILD-TYPE 37 28
  TSFM MUTATED TSFM WILD-TYPE 
             4             65 
  TSFM MUTATED TSFM WILD-TYPE 
             1             28 
$`TSFM MUTATED`
TCGA-H6-8124 TCGA-HZ-8005 TCGA-HZ-8317 TCGA-IB-8126 
       12.89         3.95         0.53         0.56 

$`TSFM WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P5 TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR 
        0.13        11.93        12.66         2.47         0.03         5.46 
TCGA-FZ-5920 TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7289 
        2.01        36.20        20.81         7.66        13.02         7.89 
TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 
        0.92         0.66         0.13         0.26        12.13        11.87 
TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8315 TCGA-HZ-8636 
        0.26         0.62         0.79         0.69         0.92         0.16 
TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 
        2.99         0.76         0.95         6.38         1.51        11.41 
TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7651 TCGA-IB-7652 
       49.38         4.77        21.90        15.35        19.82        15.65 
TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 
       27.98         4.04         3.62        43.79        15.81        19.66 
TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP 
       16.04         3.85        15.98        17.16        10.82         9.86 
TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W 
        7.20        15.12         0.26         1.35         4.18         3.62 
TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
        8.12        13.68        16.80        14.14        18.67 

  TSFM MUTATED TSFM WILD-TYPE 
          0.53           0.03 
  TSFM MUTATED TSFM WILD-TYPE 
         12.89          49.38 
  TSFM MUTATED TSFM WILD-TYPE 
         2.255          7.890 
[1] "0.5 - 12.9 (2.3)" "0.0 - 49.4 (7.9)"
    TCGA-F2-6879     TCGA-F2-6880     TCGA-F2-7273     TCGA-F2-7276 
"TSFM WILD-TYPE" "TSFM WILD-TYPE" "TSFM WILD-TYPE" "TSFM WILD-TYPE" 
    TCGA-F2-A44G     TCGA-F2-A44H     TCGA-FB-A4P5     TCGA-FB-A4P6 
"TSFM WILD-TYPE" "TSFM WILD-TYPE" "TSFM WILD-TYPE" "TSFM WILD-TYPE" 
    TCGA-FB-A545     TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-FB-A7DR 
"TSFM WILD-TYPE" "TSFM WILD-TYPE" "TSFM WILD-TYPE" "TSFM WILD-TYPE" 
    TCGA-FZ-5920     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-H6-8124 
"TSFM WILD-TYPE" "TSFM WILD-TYPE" "TSFM WILD-TYPE"   "TSFM MUTATED" 
    TCGA-H6-A45N     TCGA-H8-A6C1     TCGA-HZ-7289     TCGA-HZ-7918 
"TSFM WILD-TYPE" "TSFM WILD-TYPE" "TSFM WILD-TYPE" "TSFM WILD-TYPE" 
    TCGA-HZ-7919     TCGA-HZ-7922     TCGA-HZ-7923     TCGA-HZ-7924 
"TSFM WILD-TYPE" "TSFM WILD-TYPE" "TSFM WILD-TYPE" "TSFM WILD-TYPE" 
    TCGA-HZ-7925     TCGA-HZ-7926     TCGA-HZ-8001     TCGA-HZ-8002 
"TSFM WILD-TYPE" "TSFM WILD-TYPE" "TSFM WILD-TYPE" "TSFM WILD-TYPE" 
    TCGA-HZ-8003     TCGA-HZ-8005     TCGA-HZ-8315     TCGA-HZ-8317 
"TSFM WILD-TYPE"   "TSFM MUTATED" "TSFM WILD-TYPE"   "TSFM MUTATED" 
    TCGA-HZ-8636     TCGA-HZ-8638     TCGA-HZ-A49G     TCGA-HZ-A49H 
"TSFM WILD-TYPE" "TSFM WILD-TYPE" "TSFM WILD-TYPE" "TSFM WILD-TYPE" 
    TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-IB-7644     TCGA-IB-7645 
"TSFM WILD-TYPE" "TSFM WILD-TYPE" "TSFM WILD-TYPE" "TSFM WILD-TYPE" 
    TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7651 
"TSFM WILD-TYPE" "TSFM WILD-TYPE" "TSFM WILD-TYPE" "TSFM WILD-TYPE" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887 
"TSFM WILD-TYPE" "TSFM WILD-TYPE" "TSFM WILD-TYPE" "TSFM WILD-TYPE" 
    TCGA-IB-7888     TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891 
"TSFM WILD-TYPE" "TSFM WILD-TYPE" "TSFM WILD-TYPE" "TSFM WILD-TYPE" 
    TCGA-IB-7893     TCGA-IB-7897     TCGA-IB-8126     TCGA-IB-8127 
"TSFM WILD-TYPE" "TSFM WILD-TYPE"   "TSFM MUTATED" "TSFM WILD-TYPE" 
    TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS 
"TSFM WILD-TYPE" "TSFM WILD-TYPE" "TSFM WILD-TYPE" "TSFM WILD-TYPE" 
    TCGA-IB-A5ST     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
"TSFM WILD-TYPE" "TSFM WILD-TYPE" "TSFM WILD-TYPE" "TSFM WILD-TYPE" 
    TCGA-PZ-A5RE     TCGA-Q3-A5QY     TCGA-US-A779     TCGA-US-A77E 
"TSFM WILD-TYPE" "TSFM WILD-TYPE" "TSFM WILD-TYPE" "TSFM WILD-TYPE" 
    TCGA-US-A77J 
"TSFM WILD-TYPE" 
    TCGA-F2-6879     TCGA-F2-6880     TCGA-F2-7273     TCGA-F2-7276 
"TSFM WILD-TYPE" "TSFM WILD-TYPE" "TSFM WILD-TYPE" "TSFM WILD-TYPE" 
    TCGA-F2-A44G     TCGA-F2-A44H     TCGA-FB-A4P5     TCGA-FB-A4P6 
"TSFM WILD-TYPE" "TSFM WILD-TYPE" "TSFM WILD-TYPE" "TSFM WILD-TYPE" 
    TCGA-FB-A545     TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-FB-A7DR 
"TSFM WILD-TYPE" "TSFM WILD-TYPE" "TSFM WILD-TYPE" "TSFM WILD-TYPE" 
    TCGA-FZ-5920     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-H6-8124 
"TSFM WILD-TYPE" "TSFM WILD-TYPE" "TSFM WILD-TYPE"   "TSFM MUTATED" 
    TCGA-H6-A45N     TCGA-H8-A6C1     TCGA-HZ-7289     TCGA-HZ-7918 
"TSFM WILD-TYPE" "TSFM WILD-TYPE" "TSFM WILD-TYPE" "TSFM WILD-TYPE" 
    TCGA-HZ-7919     TCGA-HZ-7922     TCGA-HZ-7923     TCGA-HZ-7924 
"TSFM WILD-TYPE" "TSFM WILD-TYPE" "TSFM WILD-TYPE" "TSFM WILD-TYPE" 
    TCGA-HZ-7925     TCGA-HZ-7926     TCGA-HZ-8001     TCGA-HZ-8002 
"TSFM WILD-TYPE" "TSFM WILD-TYPE" "TSFM WILD-TYPE" "TSFM WILD-TYPE" 
    TCGA-HZ-8003     TCGA-HZ-8005     TCGA-HZ-8315     TCGA-HZ-8317 
"TSFM WILD-TYPE"   "TSFM MUTATED" "TSFM WILD-TYPE"   "TSFM MUTATED" 
    TCGA-HZ-8636     TCGA-HZ-8638     TCGA-HZ-A49G     TCGA-HZ-A49H 
"TSFM WILD-TYPE" "TSFM WILD-TYPE" "TSFM WILD-TYPE" "TSFM WILD-TYPE" 
    TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-IB-7644     TCGA-IB-7645 
"TSFM WILD-TYPE" "TSFM WILD-TYPE" "TSFM WILD-TYPE" "TSFM WILD-TYPE" 
    TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7651 
"TSFM WILD-TYPE" "TSFM WILD-TYPE" "TSFM WILD-TYPE" "TSFM WILD-TYPE" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887 
"TSFM WILD-TYPE" "TSFM WILD-TYPE" "TSFM WILD-TYPE" "TSFM WILD-TYPE" 
    TCGA-IB-7888     TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891 
"TSFM WILD-TYPE" "TSFM WILD-TYPE" "TSFM WILD-TYPE" "TSFM WILD-TYPE" 
    TCGA-IB-7893     TCGA-IB-7897     TCGA-IB-8126     TCGA-IB-8127 
"TSFM WILD-TYPE" "TSFM WILD-TYPE"   "TSFM MUTATED" "TSFM WILD-TYPE" 
    TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS 
"TSFM WILD-TYPE" "TSFM WILD-TYPE" "TSFM WILD-TYPE" "TSFM WILD-TYPE" 
    TCGA-IB-A5ST     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
"TSFM WILD-TYPE" "TSFM WILD-TYPE" "TSFM WILD-TYPE" "TSFM WILD-TYPE" 
    TCGA-PZ-A5RE     TCGA-Q3-A5QY     TCGA-US-A779     TCGA-US-A77E 
"TSFM WILD-TYPE" "TSFM WILD-TYPE" "TSFM WILD-TYPE" "TSFM WILD-TYPE" 
    TCGA-US-A77J 
"TSFM WILD-TYPE" 
    TCGA-F2-6879     TCGA-F2-6880     TCGA-F2-7273     TCGA-F2-7276 
"TSFM WILD-TYPE" "TSFM WILD-TYPE" "TSFM WILD-TYPE" "TSFM WILD-TYPE" 
    TCGA-F2-A44G     TCGA-F2-A44H     TCGA-FB-A4P5     TCGA-FB-A4P6 
"TSFM WILD-TYPE" "TSFM WILD-TYPE" "TSFM WILD-TYPE" "TSFM WILD-TYPE" 
    TCGA-FB-A545     TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-FB-A7DR 
"TSFM WILD-TYPE" "TSFM WILD-TYPE" "TSFM WILD-TYPE" "TSFM WILD-TYPE" 
    TCGA-FZ-5920     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-H6-8124 
"TSFM WILD-TYPE" "TSFM WILD-TYPE" "TSFM WILD-TYPE"   "TSFM MUTATED" 
    TCGA-H6-A45N     TCGA-H8-A6C1     TCGA-HZ-7289     TCGA-HZ-7918 
"TSFM WILD-TYPE" "TSFM WILD-TYPE" "TSFM WILD-TYPE" "TSFM WILD-TYPE" 
    TCGA-HZ-7919     TCGA-HZ-7922     TCGA-HZ-7923     TCGA-HZ-7924 
"TSFM WILD-TYPE" "TSFM WILD-TYPE" "TSFM WILD-TYPE" "TSFM WILD-TYPE" 
    TCGA-HZ-7925     TCGA-HZ-7926     TCGA-HZ-8001     TCGA-HZ-8002 
"TSFM WILD-TYPE" "TSFM WILD-TYPE" "TSFM WILD-TYPE" "TSFM WILD-TYPE" 
    TCGA-HZ-8003     TCGA-HZ-8005     TCGA-HZ-8315     TCGA-HZ-8317 
"TSFM WILD-TYPE"   "TSFM MUTATED" "TSFM WILD-TYPE"   "TSFM MUTATED" 
    TCGA-HZ-8636     TCGA-HZ-8638     TCGA-HZ-A49G     TCGA-HZ-A49H 
"TSFM WILD-TYPE" "TSFM WILD-TYPE" "TSFM WILD-TYPE" "TSFM WILD-TYPE" 
    TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-IB-7644     TCGA-IB-7645 
"TSFM WILD-TYPE" "TSFM WILD-TYPE" "TSFM WILD-TYPE" "TSFM WILD-TYPE" 
    TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7651 
"TSFM WILD-TYPE" "TSFM WILD-TYPE" "TSFM WILD-TYPE" "TSFM WILD-TYPE" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887 
"TSFM WILD-TYPE" "TSFM WILD-TYPE" "TSFM WILD-TYPE" "TSFM WILD-TYPE" 
    TCGA-IB-7888     TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891 
"TSFM WILD-TYPE" "TSFM WILD-TYPE" "TSFM WILD-TYPE" "TSFM WILD-TYPE" 
    TCGA-IB-7893     TCGA-IB-7897     TCGA-IB-8126     TCGA-IB-8127 
"TSFM WILD-TYPE" "TSFM WILD-TYPE"   "TSFM MUTATED" "TSFM WILD-TYPE" 
    TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS 
"TSFM WILD-TYPE" "TSFM WILD-TYPE" "TSFM WILD-TYPE" "TSFM WILD-TYPE" 
    TCGA-IB-A5ST     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
"TSFM WILD-TYPE" "TSFM WILD-TYPE" "TSFM WILD-TYPE" "TSFM WILD-TYPE" 
    TCGA-PZ-A5RE     TCGA-Q3-A5QY     TCGA-US-A779     TCGA-US-A77E 
"TSFM WILD-TYPE" "TSFM WILD-TYPE" "TSFM WILD-TYPE" "TSFM WILD-TYPE" 
    TCGA-US-A77J 
"TSFM WILD-TYPE" 
[1] "hr=" "1.9"
D277V2, continuous
                vv
clus             STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  TSFM MUTATED          0        0         0         3         1        0
  TSFM WILD-TYPE        1        4        11        48         1        3
D277V3, multiclass
                vv
clus             T1+T2 T3+T4
  TSFM MUTATED       0     4
  TSFM WILD-TYPE     6    62
D277V4, multiclass
       clus
vv      TSFM MUTATED TSFM WILD-TYPE
  T1+T2            0              6
  T3+T4            4             62
D277V5, binary
                cls
clus              0  1
  TSFM MUTATED    0  4
  TSFM WILD-TYPE 17 50
[1] "tbl2"
                cls
clus             [,1] [,2]
  TSFM MUTATED      0    4
  TSFM WILD-TYPE   17   50
   clus
vv  TSFM MUTATED TSFM WILD-TYPE
  0            0             17
  1            4             50
                vv
clus             M0 M1 MX
  TSFM MUTATED    2  0  2
  TSFM WILD-TYPE 37  3 28
D277V6, multiclass
    clus
vv   TSFM MUTATED TSFM WILD-TYPE
  M0            2             37
  M1            0              3
  MX            2             28
D277V7, binary
                cls
clus              0  1
  TSFM MUTATED    3  1
  TSFM WILD-TYPE 33 35
[1] "tbl2"
                cls
clus             [,1] [,2]
  TSFM MUTATED      3    1
  TSFM WILD-TYPE   33   35
        clus
vv       TSFM MUTATED TSFM WILD-TYPE
  FEMALE            3             33
  MALE              1             35
                vv
clus             PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  TSFM MUTATED                                     4
  TSFM WILD-TYPE                                  61
                vv
clus             PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  TSFM MUTATED                                       0
  TSFM WILD-TYPE                                     4
                vv
clus             PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  TSFM MUTATED                                                  0
  TSFM WILD-TYPE                                                2
D277V8, multiclass
                                                  clus
vv                                                 TSFM MUTATED TSFM WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                         4             61
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                       0              4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA            0              2
D277V9, continuous
[1] "Remove cluster labels:" "TSFM MUTATED"          
clus
  TSFM MUTATED TSFM WILD-TYPE 
             2             20 
    TCGA-F2-6880     TCGA-FB-A4P5     TCGA-FB-A4P6     TCGA-FB-A5VM 
"TSFM WILD-TYPE" "TSFM WILD-TYPE" "TSFM WILD-TYPE" "TSFM WILD-TYPE" 
    TCGA-FB-A78T     TCGA-FB-A7DR     TCGA-H6-A45N     TCGA-H8-A6C1 
"TSFM WILD-TYPE" "TSFM WILD-TYPE" "TSFM WILD-TYPE" "TSFM WILD-TYPE" 
    TCGA-IB-7644     TCGA-IB-7649     TCGA-IB-7651     TCGA-IB-7885 
"TSFM WILD-TYPE" "TSFM WILD-TYPE" "TSFM WILD-TYPE" "TSFM WILD-TYPE" 
    TCGA-IB-7886     TCGA-IB-7887     TCGA-IB-7891     TCGA-IB-8127 
"TSFM WILD-TYPE" "TSFM WILD-TYPE" "TSFM WILD-TYPE" "TSFM WILD-TYPE" 
    TCGA-IB-A5SS     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
"TSFM WILD-TYPE" "TSFM WILD-TYPE" "TSFM WILD-TYPE" "TSFM WILD-TYPE" 
D277V10, continuous
[1] "Remove cluster labels:" "TSFM MUTATED"          
clus
  TSFM MUTATED TSFM WILD-TYPE 
             2             17 
    TCGA-FB-A4P5     TCGA-FB-A4P6     TCGA-FB-A5VM     TCGA-FB-A78T 
"TSFM WILD-TYPE" "TSFM WILD-TYPE" "TSFM WILD-TYPE" "TSFM WILD-TYPE" 
    TCGA-FB-A7DR     TCGA-H8-A6C1     TCGA-IB-7644     TCGA-IB-7649 
"TSFM WILD-TYPE" "TSFM WILD-TYPE" "TSFM WILD-TYPE" "TSFM WILD-TYPE" 
    TCGA-IB-7651     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7891 
"TSFM WILD-TYPE" "TSFM WILD-TYPE" "TSFM WILD-TYPE" "TSFM WILD-TYPE" 
    TCGA-IB-8127     TCGA-IB-A5SS     TCGA-IB-A6UG     TCGA-LB-A7SX 
"TSFM WILD-TYPE" "TSFM WILD-TYPE" "TSFM WILD-TYPE" "TSFM WILD-TYPE" 
    TCGA-OE-A75W 
"TSFM WILD-TYPE" 
                vv
clus             R0 R1 RX
  TSFM MUTATED    1  3  0
  TSFM WILD-TYPE 41 21  2
D277V11, multiclass
    clus
vv   TSFM MUTATED TSFM WILD-TYPE
  R0            1             41
  R1            3             21
  RX            0              2
D277V12, continuous

Clustering(278) Variable = APOA1BP MUTATION ANALYSIS
D278V1, survival
                   sevent
clus2                0  1
  APOA1BP MUTATED    4  1
  APOA1BP WILD-TYPE 36 28
  APOA1BP MUTATED APOA1BP WILD-TYPE 
                5                64 
  APOA1BP MUTATED APOA1BP WILD-TYPE 
                1                28 
$`APOA1BP MUTATED`
TCGA-F2-A44H TCGA-HZ-8636 TCGA-HZ-A4BH TCGA-IB-7651 TCGA-IB-8127 
       19.27         0.16         6.38        19.82        17.16 

$`APOA1BP WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-FB-A4P5 
       10.98         9.70        11.84         7.10         5.03         0.13 
TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR TCGA-FZ-5920 
       11.93        12.66         2.47         0.03         5.46         2.01 
TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7289 
       36.20        20.81        12.89         7.66        13.02         7.89 
TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 
        0.92         0.66         0.13         0.26        12.13        11.87 
TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 
        0.26         0.62         0.79         0.69         3.95         0.92 
TCGA-HZ-8317 TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BK TCGA-IB-7644 
        0.53         2.99         0.76         0.95         1.51        11.41 
TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7652 TCGA-IB-7885 
       49.38         4.77        21.90        15.35        15.65        27.98 
TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 
        4.04         3.62        43.79        15.81        19.66        16.04 
TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ 
        3.85        15.98         0.56        10.82         9.86         7.20 
TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W TCGA-PZ-A5RE 
       15.12         0.26         1.35         4.18         3.62         8.12 
TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
       13.68        16.80        14.14        18.67 

  APOA1BP MUTATED APOA1BP WILD-TYPE 
             0.16              0.03 
  APOA1BP MUTATED APOA1BP WILD-TYPE 
            19.82             49.38 
  APOA1BP MUTATED APOA1BP WILD-TYPE 
            17.16              7.43 
[1] "0.2 - 19.8 (17.2)" "0.0 - 49.4 (7.4)" 
       TCGA-F2-6879        TCGA-F2-6880        TCGA-F2-7273        TCGA-F2-7276 
"APOA1BP WILD-TYPE" "APOA1BP WILD-TYPE" "APOA1BP WILD-TYPE" "APOA1BP WILD-TYPE" 
       TCGA-F2-A44G        TCGA-F2-A44H        TCGA-FB-A4P5        TCGA-FB-A4P6 
"APOA1BP WILD-TYPE"   "APOA1BP MUTATED" "APOA1BP WILD-TYPE" "APOA1BP WILD-TYPE" 
       TCGA-FB-A545        TCGA-FB-A5VM        TCGA-FB-A78T        TCGA-FB-A7DR 
"APOA1BP WILD-TYPE" "APOA1BP WILD-TYPE" "APOA1BP WILD-TYPE" "APOA1BP WILD-TYPE" 
       TCGA-FZ-5920        TCGA-FZ-5922        TCGA-FZ-5923        TCGA-H6-8124 
"APOA1BP WILD-TYPE" "APOA1BP WILD-TYPE" "APOA1BP WILD-TYPE" "APOA1BP WILD-TYPE" 
       TCGA-H6-A45N        TCGA-H8-A6C1        TCGA-HZ-7289        TCGA-HZ-7918 
"APOA1BP WILD-TYPE" "APOA1BP WILD-TYPE" "APOA1BP WILD-TYPE" "APOA1BP WILD-TYPE" 
       TCGA-HZ-7919        TCGA-HZ-7922        TCGA-HZ-7923        TCGA-HZ-7924 
"APOA1BP WILD-TYPE" "APOA1BP WILD-TYPE" "APOA1BP WILD-TYPE" "APOA1BP WILD-TYPE" 
       TCGA-HZ-7925        TCGA-HZ-7926        TCGA-HZ-8001        TCGA-HZ-8002 
"APOA1BP WILD-TYPE" "APOA1BP WILD-TYPE" "APOA1BP WILD-TYPE" "APOA1BP WILD-TYPE" 
       TCGA-HZ-8003        TCGA-HZ-8005        TCGA-HZ-8315        TCGA-HZ-8317 
"APOA1BP WILD-TYPE" "APOA1BP WILD-TYPE" "APOA1BP WILD-TYPE" "APOA1BP WILD-TYPE" 
       TCGA-HZ-8636        TCGA-HZ-8638        TCGA-HZ-A49G        TCGA-HZ-A49H 
  "APOA1BP MUTATED" "APOA1BP WILD-TYPE" "APOA1BP WILD-TYPE" "APOA1BP WILD-TYPE" 
       TCGA-HZ-A4BH        TCGA-HZ-A4BK        TCGA-IB-7644        TCGA-IB-7645 
  "APOA1BP MUTATED" "APOA1BP WILD-TYPE" "APOA1BP WILD-TYPE" "APOA1BP WILD-TYPE" 
       TCGA-IB-7646        TCGA-IB-7647        TCGA-IB-7649        TCGA-IB-7651 
"APOA1BP WILD-TYPE" "APOA1BP WILD-TYPE" "APOA1BP WILD-TYPE"   "APOA1BP MUTATED" 
       TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-7886        TCGA-IB-7887 
"APOA1BP WILD-TYPE" "APOA1BP WILD-TYPE" "APOA1BP WILD-TYPE" "APOA1BP WILD-TYPE" 
       TCGA-IB-7888        TCGA-IB-7889        TCGA-IB-7890        TCGA-IB-7891 
"APOA1BP WILD-TYPE" "APOA1BP WILD-TYPE" "APOA1BP WILD-TYPE" "APOA1BP WILD-TYPE" 
       TCGA-IB-7893        TCGA-IB-7897        TCGA-IB-8126        TCGA-IB-8127 
"APOA1BP WILD-TYPE" "APOA1BP WILD-TYPE" "APOA1BP WILD-TYPE"   "APOA1BP MUTATED" 
       TCGA-IB-A5SO        TCGA-IB-A5SP        TCGA-IB-A5SQ        TCGA-IB-A5SS 
"APOA1BP WILD-TYPE" "APOA1BP WILD-TYPE" "APOA1BP WILD-TYPE" "APOA1BP WILD-TYPE" 
       TCGA-IB-A5ST        TCGA-IB-A6UG        TCGA-LB-A7SX        TCGA-OE-A75W 
"APOA1BP WILD-TYPE" "APOA1BP WILD-TYPE" "APOA1BP WILD-TYPE" "APOA1BP WILD-TYPE" 
       TCGA-PZ-A5RE        TCGA-Q3-A5QY        TCGA-US-A779        TCGA-US-A77E 
"APOA1BP WILD-TYPE" "APOA1BP WILD-TYPE" "APOA1BP WILD-TYPE" "APOA1BP WILD-TYPE" 
       TCGA-US-A77J 
"APOA1BP WILD-TYPE" 
       TCGA-F2-6879        TCGA-F2-6880        TCGA-F2-7273        TCGA-F2-7276 
"APOA1BP WILD-TYPE" "APOA1BP WILD-TYPE" "APOA1BP WILD-TYPE" "APOA1BP WILD-TYPE" 
       TCGA-F2-A44G        TCGA-F2-A44H        TCGA-FB-A4P5        TCGA-FB-A4P6 
"APOA1BP WILD-TYPE"   "APOA1BP MUTATED" "APOA1BP WILD-TYPE" "APOA1BP WILD-TYPE" 
       TCGA-FB-A545        TCGA-FB-A5VM        TCGA-FB-A78T        TCGA-FB-A7DR 
"APOA1BP WILD-TYPE" "APOA1BP WILD-TYPE" "APOA1BP WILD-TYPE" "APOA1BP WILD-TYPE" 
       TCGA-FZ-5920        TCGA-FZ-5922        TCGA-FZ-5923        TCGA-H6-8124 
"APOA1BP WILD-TYPE" "APOA1BP WILD-TYPE" "APOA1BP WILD-TYPE" "APOA1BP WILD-TYPE" 
       TCGA-H6-A45N        TCGA-H8-A6C1        TCGA-HZ-7289        TCGA-HZ-7918 
"APOA1BP WILD-TYPE" "APOA1BP WILD-TYPE" "APOA1BP WILD-TYPE" "APOA1BP WILD-TYPE" 
       TCGA-HZ-7919        TCGA-HZ-7922        TCGA-HZ-7923        TCGA-HZ-7924 
"APOA1BP WILD-TYPE" "APOA1BP WILD-TYPE" "APOA1BP WILD-TYPE" "APOA1BP WILD-TYPE" 
       TCGA-HZ-7925        TCGA-HZ-7926        TCGA-HZ-8001        TCGA-HZ-8002 
"APOA1BP WILD-TYPE" "APOA1BP WILD-TYPE" "APOA1BP WILD-TYPE" "APOA1BP WILD-TYPE" 
       TCGA-HZ-8003        TCGA-HZ-8005        TCGA-HZ-8315        TCGA-HZ-8317 
"APOA1BP WILD-TYPE" "APOA1BP WILD-TYPE" "APOA1BP WILD-TYPE" "APOA1BP WILD-TYPE" 
       TCGA-HZ-8636        TCGA-HZ-8638        TCGA-HZ-A49G        TCGA-HZ-A49H 
  "APOA1BP MUTATED" "APOA1BP WILD-TYPE" "APOA1BP WILD-TYPE" "APOA1BP WILD-TYPE" 
       TCGA-HZ-A4BH        TCGA-HZ-A4BK        TCGA-IB-7644        TCGA-IB-7645 
  "APOA1BP MUTATED" "APOA1BP WILD-TYPE" "APOA1BP WILD-TYPE" "APOA1BP WILD-TYPE" 
       TCGA-IB-7646        TCGA-IB-7647        TCGA-IB-7649        TCGA-IB-7651 
"APOA1BP WILD-TYPE" "APOA1BP WILD-TYPE" "APOA1BP WILD-TYPE"   "APOA1BP MUTATED" 
       TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-7886        TCGA-IB-7887 
"APOA1BP WILD-TYPE" "APOA1BP WILD-TYPE" "APOA1BP WILD-TYPE" "APOA1BP WILD-TYPE" 
       TCGA-IB-7888        TCGA-IB-7889        TCGA-IB-7890        TCGA-IB-7891 
"APOA1BP WILD-TYPE" "APOA1BP WILD-TYPE" "APOA1BP WILD-TYPE" "APOA1BP WILD-TYPE" 
       TCGA-IB-7893        TCGA-IB-7897        TCGA-IB-8126        TCGA-IB-8127 
"APOA1BP WILD-TYPE" "APOA1BP WILD-TYPE" "APOA1BP WILD-TYPE"   "APOA1BP MUTATED" 
       TCGA-IB-A5SO        TCGA-IB-A5SP        TCGA-IB-A5SQ        TCGA-IB-A5SS 
"APOA1BP WILD-TYPE" "APOA1BP WILD-TYPE" "APOA1BP WILD-TYPE" "APOA1BP WILD-TYPE" 
       TCGA-IB-A5ST        TCGA-IB-A6UG        TCGA-LB-A7SX        TCGA-OE-A75W 
"APOA1BP WILD-TYPE" "APOA1BP WILD-TYPE" "APOA1BP WILD-TYPE" "APOA1BP WILD-TYPE" 
       TCGA-PZ-A5RE        TCGA-Q3-A5QY        TCGA-US-A779        TCGA-US-A77E 
"APOA1BP WILD-TYPE" "APOA1BP WILD-TYPE" "APOA1BP WILD-TYPE" "APOA1BP WILD-TYPE" 
       TCGA-US-A77J 
"APOA1BP WILD-TYPE" 
       TCGA-F2-6879        TCGA-F2-6880        TCGA-F2-7273        TCGA-F2-7276 
"APOA1BP WILD-TYPE" "APOA1BP WILD-TYPE" "APOA1BP WILD-TYPE" "APOA1BP WILD-TYPE" 
       TCGA-F2-A44G        TCGA-F2-A44H        TCGA-FB-A4P5        TCGA-FB-A4P6 
"APOA1BP WILD-TYPE"   "APOA1BP MUTATED" "APOA1BP WILD-TYPE" "APOA1BP WILD-TYPE" 
       TCGA-FB-A545        TCGA-FB-A5VM        TCGA-FB-A78T        TCGA-FB-A7DR 
"APOA1BP WILD-TYPE" "APOA1BP WILD-TYPE" "APOA1BP WILD-TYPE" "APOA1BP WILD-TYPE" 
       TCGA-FZ-5920        TCGA-FZ-5922        TCGA-FZ-5923        TCGA-H6-8124 
"APOA1BP WILD-TYPE" "APOA1BP WILD-TYPE" "APOA1BP WILD-TYPE" "APOA1BP WILD-TYPE" 
       TCGA-H6-A45N        TCGA-H8-A6C1        TCGA-HZ-7289        TCGA-HZ-7918 
"APOA1BP WILD-TYPE" "APOA1BP WILD-TYPE" "APOA1BP WILD-TYPE" "APOA1BP WILD-TYPE" 
       TCGA-HZ-7919        TCGA-HZ-7922        TCGA-HZ-7923        TCGA-HZ-7924 
"APOA1BP WILD-TYPE" "APOA1BP WILD-TYPE" "APOA1BP WILD-TYPE" "APOA1BP WILD-TYPE" 
       TCGA-HZ-7925        TCGA-HZ-7926        TCGA-HZ-8001        TCGA-HZ-8002 
"APOA1BP WILD-TYPE" "APOA1BP WILD-TYPE" "APOA1BP WILD-TYPE" "APOA1BP WILD-TYPE" 
       TCGA-HZ-8003        TCGA-HZ-8005        TCGA-HZ-8315        TCGA-HZ-8317 
"APOA1BP WILD-TYPE" "APOA1BP WILD-TYPE" "APOA1BP WILD-TYPE" "APOA1BP WILD-TYPE" 
       TCGA-HZ-8636        TCGA-HZ-8638        TCGA-HZ-A49G        TCGA-HZ-A49H 
  "APOA1BP MUTATED" "APOA1BP WILD-TYPE" "APOA1BP WILD-TYPE" "APOA1BP WILD-TYPE" 
       TCGA-HZ-A4BH        TCGA-HZ-A4BK        TCGA-IB-7644        TCGA-IB-7645 
  "APOA1BP MUTATED" "APOA1BP WILD-TYPE" "APOA1BP WILD-TYPE" "APOA1BP WILD-TYPE" 
       TCGA-IB-7646        TCGA-IB-7647        TCGA-IB-7649        TCGA-IB-7651 
"APOA1BP WILD-TYPE" "APOA1BP WILD-TYPE" "APOA1BP WILD-TYPE"   "APOA1BP MUTATED" 
       TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-7886        TCGA-IB-7887 
"APOA1BP WILD-TYPE" "APOA1BP WILD-TYPE" "APOA1BP WILD-TYPE" "APOA1BP WILD-TYPE" 
       TCGA-IB-7888        TCGA-IB-7889        TCGA-IB-7890        TCGA-IB-7891 
"APOA1BP WILD-TYPE" "APOA1BP WILD-TYPE" "APOA1BP WILD-TYPE" "APOA1BP WILD-TYPE" 
       TCGA-IB-7893        TCGA-IB-7897        TCGA-IB-8126        TCGA-IB-8127 
"APOA1BP WILD-TYPE" "APOA1BP WILD-TYPE" "APOA1BP WILD-TYPE"   "APOA1BP MUTATED" 
       TCGA-IB-A5SO        TCGA-IB-A5SP        TCGA-IB-A5SQ        TCGA-IB-A5SS 
"APOA1BP WILD-TYPE" "APOA1BP WILD-TYPE" "APOA1BP WILD-TYPE" "APOA1BP WILD-TYPE" 
       TCGA-IB-A5ST        TCGA-IB-A6UG        TCGA-LB-A7SX        TCGA-OE-A75W 
"APOA1BP WILD-TYPE" "APOA1BP WILD-TYPE" "APOA1BP WILD-TYPE" "APOA1BP WILD-TYPE" 
       TCGA-PZ-A5RE        TCGA-Q3-A5QY        TCGA-US-A779        TCGA-US-A77E 
"APOA1BP WILD-TYPE" "APOA1BP WILD-TYPE" "APOA1BP WILD-TYPE" "APOA1BP WILD-TYPE" 
       TCGA-US-A77J 
"APOA1BP WILD-TYPE" 
[1] "hr=" "3.3"
D278V2, continuous
                   vv
clus                STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  APOA1BP MUTATED          0        0         1         3         0        1
  APOA1BP WILD-TYPE        1        4        10        48         2        2
D278V3, multiclass
                   vv
clus                T1+T2 T3+T4
  APOA1BP MUTATED       0     5
  APOA1BP WILD-TYPE     6    61
D278V4, multiclass
       clus
vv      APOA1BP MUTATED APOA1BP WILD-TYPE
  T1+T2               0                 6
  T3+T4               5                61
D278V5, binary
                   cls
clus                 0  1
  APOA1BP MUTATED    2  3
  APOA1BP WILD-TYPE 15 51
[1] "tbl2"
                   cls
clus                [,1] [,2]
  APOA1BP MUTATED      2    3
  APOA1BP WILD-TYPE   15   51
   clus
vv  APOA1BP MUTATED APOA1BP WILD-TYPE
  0               2                15
  1               3                51
                   vv
clus                M0 M1 MX
  APOA1BP MUTATED    3  1  1
  APOA1BP WILD-TYPE 36  2 29
D278V6, multiclass
    clus
vv   APOA1BP MUTATED APOA1BP WILD-TYPE
  M0               3                36
  M1               1                 2
  MX               1                29
D278V7, binary
                   cls
clus                 0  1
  APOA1BP MUTATED    2  3
  APOA1BP WILD-TYPE 34 33
[1] "tbl2"
                   cls
clus                [,1] [,2]
  APOA1BP MUTATED      2    3
  APOA1BP WILD-TYPE   34   33
        clus
vv       APOA1BP MUTATED APOA1BP WILD-TYPE
  FEMALE               2                34
  MALE                 3                33
                   vv
clus                PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  APOA1BP MUTATED                                     5
  APOA1BP WILD-TYPE                                  60
                   vv
clus                PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  APOA1BP MUTATED                                       0
  APOA1BP WILD-TYPE                                     4
                   vv
clus                PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  APOA1BP MUTATED                                                  0
  APOA1BP WILD-TYPE                                                2
D278V8, multiclass
                                                  clus
vv                                                 APOA1BP MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                            5
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                          0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA               0
                                                  clus
vv                                                 APOA1BP WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                             60
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                            4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                 2
D278V9, continuous
[1] "Remove cluster labels:" "APOA1BP MUTATED"       
clus
  APOA1BP MUTATED APOA1BP WILD-TYPE 
                2                20 
       TCGA-F2-6880        TCGA-FB-A4P5        TCGA-FB-A4P6        TCGA-FB-A5VM 
"APOA1BP WILD-TYPE" "APOA1BP WILD-TYPE" "APOA1BP WILD-TYPE" "APOA1BP WILD-TYPE" 
       TCGA-FB-A78T        TCGA-FB-A7DR        TCGA-H6-8124        TCGA-H6-A45N 
"APOA1BP WILD-TYPE" "APOA1BP WILD-TYPE" "APOA1BP WILD-TYPE" "APOA1BP WILD-TYPE" 
       TCGA-H8-A6C1        TCGA-IB-7644        TCGA-IB-7649        TCGA-IB-7885 
"APOA1BP WILD-TYPE" "APOA1BP WILD-TYPE" "APOA1BP WILD-TYPE" "APOA1BP WILD-TYPE" 
       TCGA-IB-7886        TCGA-IB-7887        TCGA-IB-7891        TCGA-IB-8126 
"APOA1BP WILD-TYPE" "APOA1BP WILD-TYPE" "APOA1BP WILD-TYPE" "APOA1BP WILD-TYPE" 
       TCGA-IB-A5SS        TCGA-IB-A6UG        TCGA-LB-A7SX        TCGA-OE-A75W 
"APOA1BP WILD-TYPE" "APOA1BP WILD-TYPE" "APOA1BP WILD-TYPE" "APOA1BP WILD-TYPE" 
D278V10, continuous
[1] "Remove cluster labels:" "APOA1BP MUTATED"       
clus
  APOA1BP MUTATED APOA1BP WILD-TYPE 
                2                17 
       TCGA-FB-A4P5        TCGA-FB-A4P6        TCGA-FB-A5VM        TCGA-FB-A78T 
"APOA1BP WILD-TYPE" "APOA1BP WILD-TYPE" "APOA1BP WILD-TYPE" "APOA1BP WILD-TYPE" 
       TCGA-FB-A7DR        TCGA-H6-8124        TCGA-H8-A6C1        TCGA-IB-7644 
"APOA1BP WILD-TYPE" "APOA1BP WILD-TYPE" "APOA1BP WILD-TYPE" "APOA1BP WILD-TYPE" 
       TCGA-IB-7649        TCGA-IB-7885        TCGA-IB-7886        TCGA-IB-7891 
"APOA1BP WILD-TYPE" "APOA1BP WILD-TYPE" "APOA1BP WILD-TYPE" "APOA1BP WILD-TYPE" 
       TCGA-IB-8126        TCGA-IB-A5SS        TCGA-IB-A6UG        TCGA-LB-A7SX 
"APOA1BP WILD-TYPE" "APOA1BP WILD-TYPE" "APOA1BP WILD-TYPE" "APOA1BP WILD-TYPE" 
       TCGA-OE-A75W 
"APOA1BP WILD-TYPE" 
                   vv
clus                R0 R1 RX
  APOA1BP MUTATED    2  3  0
  APOA1BP WILD-TYPE 40 21  2
D278V11, multiclass
    clus
vv   APOA1BP MUTATED APOA1BP WILD-TYPE
  R0               2                40
  R1               3                21
  RX               0                 2
D278V12, continuous

Clustering(279) Variable = DDX10 MUTATION ANALYSIS
D279V1, survival
                 sevent
clus2              0  1
  DDX10 MUTATED    3  2
  DDX10 WILD-TYPE 37 27
  DDX10 MUTATED DDX10 WILD-TYPE 
              5              64 
  DDX10 MUTATED DDX10 WILD-TYPE 
              2              27 
$`DDX10 MUTATED`
TCGA-HZ-7924 TCGA-HZ-8003 TCGA-HZ-8317 TCGA-IB-7651 TCGA-IB-7888 
       12.13         0.69         0.53        19.82        43.79 

$`DDX10 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P5 TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR 
        0.13        11.93        12.66         2.47         0.03         5.46 
TCGA-FZ-5920 TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 
        2.01        36.20        20.81        12.89         7.66        13.02 
TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7925 
        7.89         0.92         0.66         0.13         0.26        11.87 
TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8636 
        0.26         0.62         0.79         3.95         0.92         0.16 
TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 
        2.99         0.76         0.95         6.38         1.51        11.41 
TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7652 TCGA-IB-7885 
       49.38         4.77        21.90        15.35        15.65        27.98 
TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-7893 
        4.04         3.62        15.81        19.66        16.04         3.85 
TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ 
       15.98         0.56        17.16        10.82         9.86         7.20 
TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W TCGA-PZ-A5RE 
       15.12         0.26         1.35         4.18         3.62         8.12 
TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
       13.68        16.80        14.14        18.67 

  DDX10 MUTATED DDX10 WILD-TYPE 
           0.53            0.03 
  DDX10 MUTATED DDX10 WILD-TYPE 
          43.79           49.38 
  DDX10 MUTATED DDX10 WILD-TYPE 
          12.13            7.43 
[1] "0.5 - 43.8 (12.1)" "0.0 - 49.4 (7.4)" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"DDX10 WILD-TYPE" "DDX10 WILD-TYPE" "DDX10 WILD-TYPE" "DDX10 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"DDX10 WILD-TYPE" "DDX10 WILD-TYPE" "DDX10 WILD-TYPE" "DDX10 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"DDX10 WILD-TYPE" "DDX10 WILD-TYPE" "DDX10 WILD-TYPE" "DDX10 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"DDX10 WILD-TYPE" "DDX10 WILD-TYPE" "DDX10 WILD-TYPE" "DDX10 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"DDX10 WILD-TYPE" "DDX10 WILD-TYPE" "DDX10 WILD-TYPE" "DDX10 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"DDX10 WILD-TYPE" "DDX10 WILD-TYPE" "DDX10 WILD-TYPE"   "DDX10 MUTATED" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"DDX10 WILD-TYPE" "DDX10 WILD-TYPE" "DDX10 WILD-TYPE" "DDX10 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
  "DDX10 MUTATED" "DDX10 WILD-TYPE" "DDX10 WILD-TYPE"   "DDX10 MUTATED" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"DDX10 WILD-TYPE" "DDX10 WILD-TYPE" "DDX10 WILD-TYPE" "DDX10 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"DDX10 WILD-TYPE" "DDX10 WILD-TYPE" "DDX10 WILD-TYPE" "DDX10 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"DDX10 WILD-TYPE" "DDX10 WILD-TYPE" "DDX10 WILD-TYPE"   "DDX10 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"DDX10 WILD-TYPE" "DDX10 WILD-TYPE" "DDX10 WILD-TYPE" "DDX10 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
  "DDX10 MUTATED" "DDX10 WILD-TYPE" "DDX10 WILD-TYPE" "DDX10 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"DDX10 WILD-TYPE" "DDX10 WILD-TYPE" "DDX10 WILD-TYPE" "DDX10 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"DDX10 WILD-TYPE" "DDX10 WILD-TYPE" "DDX10 WILD-TYPE" "DDX10 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"DDX10 WILD-TYPE" "DDX10 WILD-TYPE" "DDX10 WILD-TYPE" "DDX10 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"DDX10 WILD-TYPE" "DDX10 WILD-TYPE" "DDX10 WILD-TYPE" "DDX10 WILD-TYPE" 
     TCGA-US-A77J 
"DDX10 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"DDX10 WILD-TYPE" "DDX10 WILD-TYPE" "DDX10 WILD-TYPE" "DDX10 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"DDX10 WILD-TYPE" "DDX10 WILD-TYPE" "DDX10 WILD-TYPE" "DDX10 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"DDX10 WILD-TYPE" "DDX10 WILD-TYPE" "DDX10 WILD-TYPE" "DDX10 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"DDX10 WILD-TYPE" "DDX10 WILD-TYPE" "DDX10 WILD-TYPE" "DDX10 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"DDX10 WILD-TYPE" "DDX10 WILD-TYPE" "DDX10 WILD-TYPE" "DDX10 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"DDX10 WILD-TYPE" "DDX10 WILD-TYPE" "DDX10 WILD-TYPE"   "DDX10 MUTATED" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"DDX10 WILD-TYPE" "DDX10 WILD-TYPE" "DDX10 WILD-TYPE" "DDX10 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
  "DDX10 MUTATED" "DDX10 WILD-TYPE" "DDX10 WILD-TYPE"   "DDX10 MUTATED" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"DDX10 WILD-TYPE" "DDX10 WILD-TYPE" "DDX10 WILD-TYPE" "DDX10 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"DDX10 WILD-TYPE" "DDX10 WILD-TYPE" "DDX10 WILD-TYPE" "DDX10 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"DDX10 WILD-TYPE" "DDX10 WILD-TYPE" "DDX10 WILD-TYPE"   "DDX10 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"DDX10 WILD-TYPE" "DDX10 WILD-TYPE" "DDX10 WILD-TYPE" "DDX10 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
  "DDX10 MUTATED" "DDX10 WILD-TYPE" "DDX10 WILD-TYPE" "DDX10 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"DDX10 WILD-TYPE" "DDX10 WILD-TYPE" "DDX10 WILD-TYPE" "DDX10 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"DDX10 WILD-TYPE" "DDX10 WILD-TYPE" "DDX10 WILD-TYPE" "DDX10 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"DDX10 WILD-TYPE" "DDX10 WILD-TYPE" "DDX10 WILD-TYPE" "DDX10 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"DDX10 WILD-TYPE" "DDX10 WILD-TYPE" "DDX10 WILD-TYPE" "DDX10 WILD-TYPE" 
     TCGA-US-A77J 
"DDX10 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"DDX10 WILD-TYPE" "DDX10 WILD-TYPE" "DDX10 WILD-TYPE" "DDX10 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"DDX10 WILD-TYPE" "DDX10 WILD-TYPE" "DDX10 WILD-TYPE" "DDX10 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"DDX10 WILD-TYPE" "DDX10 WILD-TYPE" "DDX10 WILD-TYPE" "DDX10 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"DDX10 WILD-TYPE" "DDX10 WILD-TYPE" "DDX10 WILD-TYPE" "DDX10 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"DDX10 WILD-TYPE" "DDX10 WILD-TYPE" "DDX10 WILD-TYPE" "DDX10 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"DDX10 WILD-TYPE" "DDX10 WILD-TYPE" "DDX10 WILD-TYPE"   "DDX10 MUTATED" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"DDX10 WILD-TYPE" "DDX10 WILD-TYPE" "DDX10 WILD-TYPE" "DDX10 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
  "DDX10 MUTATED" "DDX10 WILD-TYPE" "DDX10 WILD-TYPE"   "DDX10 MUTATED" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"DDX10 WILD-TYPE" "DDX10 WILD-TYPE" "DDX10 WILD-TYPE" "DDX10 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"DDX10 WILD-TYPE" "DDX10 WILD-TYPE" "DDX10 WILD-TYPE" "DDX10 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"DDX10 WILD-TYPE" "DDX10 WILD-TYPE" "DDX10 WILD-TYPE"   "DDX10 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"DDX10 WILD-TYPE" "DDX10 WILD-TYPE" "DDX10 WILD-TYPE" "DDX10 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
  "DDX10 MUTATED" "DDX10 WILD-TYPE" "DDX10 WILD-TYPE" "DDX10 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"DDX10 WILD-TYPE" "DDX10 WILD-TYPE" "DDX10 WILD-TYPE" "DDX10 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"DDX10 WILD-TYPE" "DDX10 WILD-TYPE" "DDX10 WILD-TYPE" "DDX10 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"DDX10 WILD-TYPE" "DDX10 WILD-TYPE" "DDX10 WILD-TYPE" "DDX10 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"DDX10 WILD-TYPE" "DDX10 WILD-TYPE" "DDX10 WILD-TYPE" "DDX10 WILD-TYPE" 
     TCGA-US-A77J 
"DDX10 WILD-TYPE" 
[1] "hr=" "2.2"
D279V2, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  DDX10 MUTATED          0        1         2         3         0        0
  DDX10 WILD-TYPE        1        3         9        48         2        3
D279V3, multiclass
                 vv
clus              T1+T2 T3+T4
  DDX10 MUTATED       1     5
  DDX10 WILD-TYPE     5    61
D279V4, multiclass
       clus
vv      DDX10 MUTATED DDX10 WILD-TYPE
  T1+T2             1               5
  T3+T4             5              61
D279V5, binary
                 cls
clus               0  1
  DDX10 MUTATED    3  3
  DDX10 WILD-TYPE 14 51
[1] "tbl2"
                 cls
clus              [,1] [,2]
  DDX10 MUTATED      3    3
  DDX10 WILD-TYPE   14   51
   clus
vv  DDX10 MUTATED DDX10 WILD-TYPE
  0             3              14
  1             3              51
                 vv
clus              M0 M1 MX
  DDX10 MUTATED    2  0  4
  DDX10 WILD-TYPE 37  3 26
D279V6, multiclass
    clus
vv   DDX10 MUTATED DDX10 WILD-TYPE
  M0             2              37
  M1             0               3
  MX             4              26
D279V7, binary
                 cls
clus               0  1
  DDX10 MUTATED    5  1
  DDX10 WILD-TYPE 31 35
[1] "tbl2"
                 cls
clus              [,1] [,2]
  DDX10 MUTATED      5    1
  DDX10 WILD-TYPE   31   35
        clus
vv       DDX10 MUTATED DDX10 WILD-TYPE
  FEMALE             5              31
  MALE               1              35
                 vv
clus              PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  DDX10 MUTATED                                     6
  DDX10 WILD-TYPE                                  59
                 vv
clus              PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  DDX10 MUTATED                                       0
  DDX10 WILD-TYPE                                     4
                 vv
clus              PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  DDX10 MUTATED                                                  0
  DDX10 WILD-TYPE                                                2
D279V8, multiclass
                                                  clus
vv                                                 DDX10 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                          6
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                        0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA             0
                                                  clus
vv                                                 DDX10 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                           59
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                          4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA               2
D279V9, continuous
[1] "Remove cluster labels:" "DDX10 MUTATED"         
clus
  DDX10 MUTATED DDX10 WILD-TYPE 
              1              21 
     TCGA-F2-6880      TCGA-FB-A4P5      TCGA-FB-A4P6      TCGA-FB-A5VM 
"DDX10 WILD-TYPE" "DDX10 WILD-TYPE" "DDX10 WILD-TYPE" "DDX10 WILD-TYPE" 
     TCGA-FB-A78T      TCGA-FB-A7DR      TCGA-H6-8124      TCGA-H6-A45N 
"DDX10 WILD-TYPE" "DDX10 WILD-TYPE" "DDX10 WILD-TYPE" "DDX10 WILD-TYPE" 
     TCGA-H8-A6C1      TCGA-IB-7644      TCGA-IB-7649      TCGA-IB-7885 
"DDX10 WILD-TYPE" "DDX10 WILD-TYPE" "DDX10 WILD-TYPE" "DDX10 WILD-TYPE" 
     TCGA-IB-7886      TCGA-IB-7887      TCGA-IB-7891      TCGA-IB-8126 
"DDX10 WILD-TYPE" "DDX10 WILD-TYPE" "DDX10 WILD-TYPE" "DDX10 WILD-TYPE" 
     TCGA-IB-8127      TCGA-IB-A5SS      TCGA-IB-A6UG      TCGA-LB-A7SX 
"DDX10 WILD-TYPE" "DDX10 WILD-TYPE" "DDX10 WILD-TYPE" "DDX10 WILD-TYPE" 
     TCGA-OE-A75W 
"DDX10 WILD-TYPE" 
D279V10, continuous
[1] "Remove cluster labels:" "DDX10 MUTATED"         
clus
  DDX10 MUTATED DDX10 WILD-TYPE 
              1              18 
     TCGA-FB-A4P5      TCGA-FB-A4P6      TCGA-FB-A5VM      TCGA-FB-A78T 
"DDX10 WILD-TYPE" "DDX10 WILD-TYPE" "DDX10 WILD-TYPE" "DDX10 WILD-TYPE" 
     TCGA-FB-A7DR      TCGA-H6-8124      TCGA-H8-A6C1      TCGA-IB-7644 
"DDX10 WILD-TYPE" "DDX10 WILD-TYPE" "DDX10 WILD-TYPE" "DDX10 WILD-TYPE" 
     TCGA-IB-7649      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7891 
"DDX10 WILD-TYPE" "DDX10 WILD-TYPE" "DDX10 WILD-TYPE" "DDX10 WILD-TYPE" 
     TCGA-IB-8126      TCGA-IB-8127      TCGA-IB-A5SS      TCGA-IB-A6UG 
"DDX10 WILD-TYPE" "DDX10 WILD-TYPE" "DDX10 WILD-TYPE" "DDX10 WILD-TYPE" 
     TCGA-LB-A7SX      TCGA-OE-A75W 
"DDX10 WILD-TYPE" "DDX10 WILD-TYPE" 
                 vv
clus              R0 R1 RX
  DDX10 MUTATED    5  1  0
  DDX10 WILD-TYPE 37 23  2
D279V11, multiclass
    clus
vv   DDX10 MUTATED DDX10 WILD-TYPE
  R0             5              37
  R1             1              23
  RX             0               2
D279V12, continuous

Clustering(280) Variable = USP4 MUTATION ANALYSIS
D280V1, survival
                sevent
clus2             0  1
  USP4 MUTATED    4  4
  USP4 WILD-TYPE 36 25
  USP4 MUTATED USP4 WILD-TYPE 
             8             61 
  USP4 MUTATED USP4 WILD-TYPE 
             4             25 
$`USP4 MUTATED`
TCGA-F2-7276 TCGA-H6-8124 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-IB-7651 TCGA-IB-7887 
        7.10        12.89         0.79         0.69        19.82         3.62 
TCGA-IB-7897 TCGA-Q3-A5QY 
       15.98        13.68 

$`USP4 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-A44G TCGA-F2-A44H TCGA-FB-A4P5 
       10.98         9.70        11.84         5.03        19.27         0.13 
TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR TCGA-FZ-5920 
       11.93        12.66         2.47         0.03         5.46         2.01 
TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7289 TCGA-HZ-7918 
       36.20        20.81         7.66        13.02         7.89         0.92 
TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 
        0.66         0.13         0.26        12.13        11.87         0.26 
TCGA-HZ-8001 TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8636 TCGA-HZ-8638 
        0.62         3.95         0.92         0.53         0.16         2.99 
TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7645 
        0.76         0.95         6.38         1.51        11.41        49.38 
TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7886 
        4.77        21.90        15.35        15.65        27.98         4.04 
TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-8126 
       43.79        15.81        19.66        16.04         3.85         0.56 
TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST 
       17.16        10.82         9.86         7.20        15.12         0.26 
TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W TCGA-PZ-A5RE TCGA-US-A779 TCGA-US-A77E 
        1.35         4.18         3.62         8.12        16.80        14.14 
TCGA-US-A77J 
       18.67 

  USP4 MUTATED USP4 WILD-TYPE 
          0.69           0.03 
  USP4 MUTATED USP4 WILD-TYPE 
         19.82          49.38 
  USP4 MUTATED USP4 WILD-TYPE 
         9.995          7.660 
[1] "0.7 - 19.8 (10.0)" "0.0 - 49.4 (7.7)" 
    TCGA-F2-6879     TCGA-F2-6880     TCGA-F2-7273     TCGA-F2-7276 
"USP4 WILD-TYPE" "USP4 WILD-TYPE" "USP4 WILD-TYPE"   "USP4 MUTATED" 
    TCGA-F2-A44G     TCGA-F2-A44H     TCGA-FB-A4P5     TCGA-FB-A4P6 
"USP4 WILD-TYPE" "USP4 WILD-TYPE" "USP4 WILD-TYPE" "USP4 WILD-TYPE" 
    TCGA-FB-A545     TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-FB-A7DR 
"USP4 WILD-TYPE" "USP4 WILD-TYPE" "USP4 WILD-TYPE" "USP4 WILD-TYPE" 
    TCGA-FZ-5920     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-H6-8124 
"USP4 WILD-TYPE" "USP4 WILD-TYPE" "USP4 WILD-TYPE"   "USP4 MUTATED" 
    TCGA-H6-A45N     TCGA-H8-A6C1     TCGA-HZ-7289     TCGA-HZ-7918 
"USP4 WILD-TYPE" "USP4 WILD-TYPE" "USP4 WILD-TYPE" "USP4 WILD-TYPE" 
    TCGA-HZ-7919     TCGA-HZ-7922     TCGA-HZ-7923     TCGA-HZ-7924 
"USP4 WILD-TYPE" "USP4 WILD-TYPE" "USP4 WILD-TYPE" "USP4 WILD-TYPE" 
    TCGA-HZ-7925     TCGA-HZ-7926     TCGA-HZ-8001     TCGA-HZ-8002 
"USP4 WILD-TYPE" "USP4 WILD-TYPE" "USP4 WILD-TYPE"   "USP4 MUTATED" 
    TCGA-HZ-8003     TCGA-HZ-8005     TCGA-HZ-8315     TCGA-HZ-8317 
  "USP4 MUTATED" "USP4 WILD-TYPE" "USP4 WILD-TYPE" "USP4 WILD-TYPE" 
    TCGA-HZ-8636     TCGA-HZ-8638     TCGA-HZ-A49G     TCGA-HZ-A49H 
"USP4 WILD-TYPE" "USP4 WILD-TYPE" "USP4 WILD-TYPE" "USP4 WILD-TYPE" 
    TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-IB-7644     TCGA-IB-7645 
"USP4 WILD-TYPE" "USP4 WILD-TYPE" "USP4 WILD-TYPE" "USP4 WILD-TYPE" 
    TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7651 
"USP4 WILD-TYPE" "USP4 WILD-TYPE" "USP4 WILD-TYPE"   "USP4 MUTATED" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887 
"USP4 WILD-TYPE" "USP4 WILD-TYPE" "USP4 WILD-TYPE"   "USP4 MUTATED" 
    TCGA-IB-7888     TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891 
"USP4 WILD-TYPE" "USP4 WILD-TYPE" "USP4 WILD-TYPE" "USP4 WILD-TYPE" 
    TCGA-IB-7893     TCGA-IB-7897     TCGA-IB-8126     TCGA-IB-8127 
"USP4 WILD-TYPE"   "USP4 MUTATED" "USP4 WILD-TYPE" "USP4 WILD-TYPE" 
    TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS 
"USP4 WILD-TYPE" "USP4 WILD-TYPE" "USP4 WILD-TYPE" "USP4 WILD-TYPE" 
    TCGA-IB-A5ST     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
"USP4 WILD-TYPE" "USP4 WILD-TYPE" "USP4 WILD-TYPE" "USP4 WILD-TYPE" 
    TCGA-PZ-A5RE     TCGA-Q3-A5QY     TCGA-US-A779     TCGA-US-A77E 
"USP4 WILD-TYPE"   "USP4 MUTATED" "USP4 WILD-TYPE" "USP4 WILD-TYPE" 
    TCGA-US-A77J 
"USP4 WILD-TYPE" 
    TCGA-F2-6879     TCGA-F2-6880     TCGA-F2-7273     TCGA-F2-7276 
"USP4 WILD-TYPE" "USP4 WILD-TYPE" "USP4 WILD-TYPE"   "USP4 MUTATED" 
    TCGA-F2-A44G     TCGA-F2-A44H     TCGA-FB-A4P5     TCGA-FB-A4P6 
"USP4 WILD-TYPE" "USP4 WILD-TYPE" "USP4 WILD-TYPE" "USP4 WILD-TYPE" 
    TCGA-FB-A545     TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-FB-A7DR 
"USP4 WILD-TYPE" "USP4 WILD-TYPE" "USP4 WILD-TYPE" "USP4 WILD-TYPE" 
    TCGA-FZ-5920     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-H6-8124 
"USP4 WILD-TYPE" "USP4 WILD-TYPE" "USP4 WILD-TYPE"   "USP4 MUTATED" 
    TCGA-H6-A45N     TCGA-H8-A6C1     TCGA-HZ-7289     TCGA-HZ-7918 
"USP4 WILD-TYPE" "USP4 WILD-TYPE" "USP4 WILD-TYPE" "USP4 WILD-TYPE" 
    TCGA-HZ-7919     TCGA-HZ-7922     TCGA-HZ-7923     TCGA-HZ-7924 
"USP4 WILD-TYPE" "USP4 WILD-TYPE" "USP4 WILD-TYPE" "USP4 WILD-TYPE" 
    TCGA-HZ-7925     TCGA-HZ-7926     TCGA-HZ-8001     TCGA-HZ-8002 
"USP4 WILD-TYPE" "USP4 WILD-TYPE" "USP4 WILD-TYPE"   "USP4 MUTATED" 
    TCGA-HZ-8003     TCGA-HZ-8005     TCGA-HZ-8315     TCGA-HZ-8317 
  "USP4 MUTATED" "USP4 WILD-TYPE" "USP4 WILD-TYPE" "USP4 WILD-TYPE" 
    TCGA-HZ-8636     TCGA-HZ-8638     TCGA-HZ-A49G     TCGA-HZ-A49H 
"USP4 WILD-TYPE" "USP4 WILD-TYPE" "USP4 WILD-TYPE" "USP4 WILD-TYPE" 
    TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-IB-7644     TCGA-IB-7645 
"USP4 WILD-TYPE" "USP4 WILD-TYPE" "USP4 WILD-TYPE" "USP4 WILD-TYPE" 
    TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7651 
"USP4 WILD-TYPE" "USP4 WILD-TYPE" "USP4 WILD-TYPE"   "USP4 MUTATED" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887 
"USP4 WILD-TYPE" "USP4 WILD-TYPE" "USP4 WILD-TYPE"   "USP4 MUTATED" 
    TCGA-IB-7888     TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891 
"USP4 WILD-TYPE" "USP4 WILD-TYPE" "USP4 WILD-TYPE" "USP4 WILD-TYPE" 
    TCGA-IB-7893     TCGA-IB-7897     TCGA-IB-8126     TCGA-IB-8127 
"USP4 WILD-TYPE"   "USP4 MUTATED" "USP4 WILD-TYPE" "USP4 WILD-TYPE" 
    TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS 
"USP4 WILD-TYPE" "USP4 WILD-TYPE" "USP4 WILD-TYPE" "USP4 WILD-TYPE" 
    TCGA-IB-A5ST     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
"USP4 WILD-TYPE" "USP4 WILD-TYPE" "USP4 WILD-TYPE" "USP4 WILD-TYPE" 
    TCGA-PZ-A5RE     TCGA-Q3-A5QY     TCGA-US-A779     TCGA-US-A77E 
"USP4 WILD-TYPE"   "USP4 MUTATED" "USP4 WILD-TYPE" "USP4 WILD-TYPE" 
    TCGA-US-A77J 
"USP4 WILD-TYPE" 
    TCGA-F2-6879     TCGA-F2-6880     TCGA-F2-7273     TCGA-F2-7276 
"USP4 WILD-TYPE" "USP4 WILD-TYPE" "USP4 WILD-TYPE"   "USP4 MUTATED" 
    TCGA-F2-A44G     TCGA-F2-A44H     TCGA-FB-A4P5     TCGA-FB-A4P6 
"USP4 WILD-TYPE" "USP4 WILD-TYPE" "USP4 WILD-TYPE" "USP4 WILD-TYPE" 
    TCGA-FB-A545     TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-FB-A7DR 
"USP4 WILD-TYPE" "USP4 WILD-TYPE" "USP4 WILD-TYPE" "USP4 WILD-TYPE" 
    TCGA-FZ-5920     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-H6-8124 
"USP4 WILD-TYPE" "USP4 WILD-TYPE" "USP4 WILD-TYPE"   "USP4 MUTATED" 
    TCGA-H6-A45N     TCGA-H8-A6C1     TCGA-HZ-7289     TCGA-HZ-7918 
"USP4 WILD-TYPE" "USP4 WILD-TYPE" "USP4 WILD-TYPE" "USP4 WILD-TYPE" 
    TCGA-HZ-7919     TCGA-HZ-7922     TCGA-HZ-7923     TCGA-HZ-7924 
"USP4 WILD-TYPE" "USP4 WILD-TYPE" "USP4 WILD-TYPE" "USP4 WILD-TYPE" 
    TCGA-HZ-7925     TCGA-HZ-7926     TCGA-HZ-8001     TCGA-HZ-8002 
"USP4 WILD-TYPE" "USP4 WILD-TYPE" "USP4 WILD-TYPE"   "USP4 MUTATED" 
    TCGA-HZ-8003     TCGA-HZ-8005     TCGA-HZ-8315     TCGA-HZ-8317 
  "USP4 MUTATED" "USP4 WILD-TYPE" "USP4 WILD-TYPE" "USP4 WILD-TYPE" 
    TCGA-HZ-8636     TCGA-HZ-8638     TCGA-HZ-A49G     TCGA-HZ-A49H 
"USP4 WILD-TYPE" "USP4 WILD-TYPE" "USP4 WILD-TYPE" "USP4 WILD-TYPE" 
    TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-IB-7644     TCGA-IB-7645 
"USP4 WILD-TYPE" "USP4 WILD-TYPE" "USP4 WILD-TYPE" "USP4 WILD-TYPE" 
    TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7651 
"USP4 WILD-TYPE" "USP4 WILD-TYPE" "USP4 WILD-TYPE"   "USP4 MUTATED" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887 
"USP4 WILD-TYPE" "USP4 WILD-TYPE" "USP4 WILD-TYPE"   "USP4 MUTATED" 
    TCGA-IB-7888     TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891 
"USP4 WILD-TYPE" "USP4 WILD-TYPE" "USP4 WILD-TYPE" "USP4 WILD-TYPE" 
    TCGA-IB-7893     TCGA-IB-7897     TCGA-IB-8126     TCGA-IB-8127 
"USP4 WILD-TYPE"   "USP4 MUTATED" "USP4 WILD-TYPE" "USP4 WILD-TYPE" 
    TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS 
"USP4 WILD-TYPE" "USP4 WILD-TYPE" "USP4 WILD-TYPE" "USP4 WILD-TYPE" 
    TCGA-IB-A5ST     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
"USP4 WILD-TYPE" "USP4 WILD-TYPE" "USP4 WILD-TYPE" "USP4 WILD-TYPE" 
    TCGA-PZ-A5RE     TCGA-Q3-A5QY     TCGA-US-A779     TCGA-US-A77E 
"USP4 WILD-TYPE"   "USP4 MUTATED" "USP4 WILD-TYPE" "USP4 WILD-TYPE" 
    TCGA-US-A77J 
"USP4 WILD-TYPE" 
[1] "hr=" "1.4"
D280V2, continuous
                vv
clus             STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  USP4 MUTATED          0        1         0         8         0        0
  USP4 WILD-TYPE        1        3        11        43         2        3
D280V3, multiclass
                vv
clus             T1+T2 T3+T4
  USP4 MUTATED       1     8
  USP4 WILD-TYPE     5    58
D280V4, multiclass
       clus
vv      USP4 MUTATED USP4 WILD-TYPE
  T1+T2            1              5
  T3+T4            8             58
D280V5, binary
                cls
clus              0  1
  USP4 MUTATED    1  8
  USP4 WILD-TYPE 16 46
[1] "tbl2"
                cls
clus             [,1] [,2]
  USP4 MUTATED      1    8
  USP4 WILD-TYPE   16   46
   clus
vv  USP4 MUTATED USP4 WILD-TYPE
  0            1             16
  1            8             46
                vv
clus             M0 M1 MX
  USP4 MUTATED    5  0  4
  USP4 WILD-TYPE 34  3 26
D280V6, multiclass
    clus
vv   USP4 MUTATED USP4 WILD-TYPE
  M0            5             34
  M1            0              3
  MX            4             26
D280V7, binary
                cls
clus              0  1
  USP4 MUTATED    5  4
  USP4 WILD-TYPE 31 32
[1] "tbl2"
                cls
clus             [,1] [,2]
  USP4 MUTATED      5    4
  USP4 WILD-TYPE   31   32
        clus
vv       USP4 MUTATED USP4 WILD-TYPE
  FEMALE            5             31
  MALE              4             32
                vv
clus             PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  USP4 MUTATED                                     9
  USP4 WILD-TYPE                                  56
                vv
clus             PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  USP4 MUTATED                                       0
  USP4 WILD-TYPE                                     4
                vv
clus             PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  USP4 MUTATED                                                  0
  USP4 WILD-TYPE                                                2
D280V8, multiclass
                                                  clus
vv                                                 USP4 MUTATED USP4 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                         9             56
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                       0              4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA            0              2
D280V9, continuous
D280V10, continuous
[1] "Remove cluster labels:" "USP4 MUTATED"          
clus
  USP4 MUTATED USP4 WILD-TYPE 
             2             17 
    TCGA-FB-A4P5     TCGA-FB-A4P6     TCGA-FB-A5VM     TCGA-FB-A78T 
"USP4 WILD-TYPE" "USP4 WILD-TYPE" "USP4 WILD-TYPE" "USP4 WILD-TYPE" 
    TCGA-FB-A7DR     TCGA-H8-A6C1     TCGA-IB-7644     TCGA-IB-7649 
"USP4 WILD-TYPE" "USP4 WILD-TYPE" "USP4 WILD-TYPE" "USP4 WILD-TYPE" 
    TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7891     TCGA-IB-8126 
"USP4 WILD-TYPE" "USP4 WILD-TYPE" "USP4 WILD-TYPE" "USP4 WILD-TYPE" 
    TCGA-IB-8127     TCGA-IB-A5SS     TCGA-IB-A6UG     TCGA-LB-A7SX 
"USP4 WILD-TYPE" "USP4 WILD-TYPE" "USP4 WILD-TYPE" "USP4 WILD-TYPE" 
    TCGA-OE-A75W 
"USP4 WILD-TYPE" 
                vv
clus             R0 R1 RX
  USP4 MUTATED    8  1  0
  USP4 WILD-TYPE 34 23  2
D280V11, multiclass
    clus
vv   USP4 MUTATED USP4 WILD-TYPE
  R0            8             34
  R1            1             23
  RX            0              2
D280V12, continuous

Clustering(281) Variable = SLC7A9 MUTATION ANALYSIS
D281V1, survival
                  sevent
clus2               0  1
  SLC7A9 MUTATED    3  3
  SLC7A9 WILD-TYPE 37 26
  SLC7A9 MUTATED SLC7A9 WILD-TYPE 
               6               63 
  SLC7A9 MUTATED SLC7A9 WILD-TYPE 
               3               26 
$`SLC7A9 MUTATED`
TCGA-HZ-7919 TCGA-HZ-8638 TCGA-IB-7651 TCGA-IB-7886 TCGA-IB-7891 TCGA-IB-7893 
        0.66         2.99        19.82         4.04        16.04         3.85 

$`SLC7A9 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P5 TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR 
        0.13        11.93        12.66         2.47         0.03         5.46 
TCGA-FZ-5920 TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 
        2.01        36.20        20.81        12.89         7.66        13.02 
TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 
        7.89         0.92         0.13         0.26        12.13        11.87 
TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 
        0.26         0.62         0.79         0.69         3.95         0.92 
TCGA-HZ-8317 TCGA-HZ-8636 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK 
        0.53         0.16         0.76         0.95         6.38         1.51 
TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7652 
       11.41        49.38         4.77        21.90        15.35        15.65 
TCGA-IB-7885 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7897 
       27.98         3.62        43.79        15.81        19.66        15.98 
TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS 
        0.56        17.16        10.82         9.86         7.20        15.12 
TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W TCGA-PZ-A5RE TCGA-Q3-A5QY 
        0.26         1.35         4.18         3.62         8.12        13.68 
TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
       16.80        14.14        18.67 

  SLC7A9 MUTATED SLC7A9 WILD-TYPE 
            0.66             0.03 
  SLC7A9 MUTATED SLC7A9 WILD-TYPE 
           19.82            49.38 
  SLC7A9 MUTATED SLC7A9 WILD-TYPE 
           3.945            7.890 
[1] "0.7 - 19.8 (3.9)" "0.0 - 49.4 (7.9)"
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
"SLC7A9 WILD-TYPE" "SLC7A9 WILD-TYPE" "SLC7A9 WILD-TYPE" "SLC7A9 WILD-TYPE" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"SLC7A9 WILD-TYPE" "SLC7A9 WILD-TYPE" "SLC7A9 WILD-TYPE" "SLC7A9 WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
"SLC7A9 WILD-TYPE" "SLC7A9 WILD-TYPE" "SLC7A9 WILD-TYPE" "SLC7A9 WILD-TYPE" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"SLC7A9 WILD-TYPE" "SLC7A9 WILD-TYPE" "SLC7A9 WILD-TYPE" "SLC7A9 WILD-TYPE" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
"SLC7A9 WILD-TYPE" "SLC7A9 WILD-TYPE" "SLC7A9 WILD-TYPE" "SLC7A9 WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
  "SLC7A9 MUTATED" "SLC7A9 WILD-TYPE" "SLC7A9 WILD-TYPE" "SLC7A9 WILD-TYPE" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"SLC7A9 WILD-TYPE" "SLC7A9 WILD-TYPE" "SLC7A9 WILD-TYPE" "SLC7A9 WILD-TYPE" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
"SLC7A9 WILD-TYPE" "SLC7A9 WILD-TYPE" "SLC7A9 WILD-TYPE" "SLC7A9 WILD-TYPE" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
"SLC7A9 WILD-TYPE"   "SLC7A9 MUTATED" "SLC7A9 WILD-TYPE" "SLC7A9 WILD-TYPE" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
"SLC7A9 WILD-TYPE" "SLC7A9 WILD-TYPE" "SLC7A9 WILD-TYPE" "SLC7A9 WILD-TYPE" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
"SLC7A9 WILD-TYPE" "SLC7A9 WILD-TYPE" "SLC7A9 WILD-TYPE"   "SLC7A9 MUTATED" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
"SLC7A9 WILD-TYPE" "SLC7A9 WILD-TYPE"   "SLC7A9 MUTATED" "SLC7A9 WILD-TYPE" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
"SLC7A9 WILD-TYPE" "SLC7A9 WILD-TYPE" "SLC7A9 WILD-TYPE"   "SLC7A9 MUTATED" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
  "SLC7A9 MUTATED" "SLC7A9 WILD-TYPE" "SLC7A9 WILD-TYPE" "SLC7A9 WILD-TYPE" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"SLC7A9 WILD-TYPE" "SLC7A9 WILD-TYPE" "SLC7A9 WILD-TYPE" "SLC7A9 WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"SLC7A9 WILD-TYPE" "SLC7A9 WILD-TYPE" "SLC7A9 WILD-TYPE" "SLC7A9 WILD-TYPE" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
"SLC7A9 WILD-TYPE" "SLC7A9 WILD-TYPE" "SLC7A9 WILD-TYPE" "SLC7A9 WILD-TYPE" 
      TCGA-US-A77J 
"SLC7A9 WILD-TYPE" 
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
"SLC7A9 WILD-TYPE" "SLC7A9 WILD-TYPE" "SLC7A9 WILD-TYPE" "SLC7A9 WILD-TYPE" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"SLC7A9 WILD-TYPE" "SLC7A9 WILD-TYPE" "SLC7A9 WILD-TYPE" "SLC7A9 WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
"SLC7A9 WILD-TYPE" "SLC7A9 WILD-TYPE" "SLC7A9 WILD-TYPE" "SLC7A9 WILD-TYPE" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"SLC7A9 WILD-TYPE" "SLC7A9 WILD-TYPE" "SLC7A9 WILD-TYPE" "SLC7A9 WILD-TYPE" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
"SLC7A9 WILD-TYPE" "SLC7A9 WILD-TYPE" "SLC7A9 WILD-TYPE" "SLC7A9 WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
  "SLC7A9 MUTATED" "SLC7A9 WILD-TYPE" "SLC7A9 WILD-TYPE" "SLC7A9 WILD-TYPE" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"SLC7A9 WILD-TYPE" "SLC7A9 WILD-TYPE" "SLC7A9 WILD-TYPE" "SLC7A9 WILD-TYPE" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
"SLC7A9 WILD-TYPE" "SLC7A9 WILD-TYPE" "SLC7A9 WILD-TYPE" "SLC7A9 WILD-TYPE" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
"SLC7A9 WILD-TYPE"   "SLC7A9 MUTATED" "SLC7A9 WILD-TYPE" "SLC7A9 WILD-TYPE" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
"SLC7A9 WILD-TYPE" "SLC7A9 WILD-TYPE" "SLC7A9 WILD-TYPE" "SLC7A9 WILD-TYPE" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
"SLC7A9 WILD-TYPE" "SLC7A9 WILD-TYPE" "SLC7A9 WILD-TYPE"   "SLC7A9 MUTATED" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
"SLC7A9 WILD-TYPE" "SLC7A9 WILD-TYPE"   "SLC7A9 MUTATED" "SLC7A9 WILD-TYPE" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
"SLC7A9 WILD-TYPE" "SLC7A9 WILD-TYPE" "SLC7A9 WILD-TYPE"   "SLC7A9 MUTATED" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
  "SLC7A9 MUTATED" "SLC7A9 WILD-TYPE" "SLC7A9 WILD-TYPE" "SLC7A9 WILD-TYPE" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"SLC7A9 WILD-TYPE" "SLC7A9 WILD-TYPE" "SLC7A9 WILD-TYPE" "SLC7A9 WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"SLC7A9 WILD-TYPE" "SLC7A9 WILD-TYPE" "SLC7A9 WILD-TYPE" "SLC7A9 WILD-TYPE" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
"SLC7A9 WILD-TYPE" "SLC7A9 WILD-TYPE" "SLC7A9 WILD-TYPE" "SLC7A9 WILD-TYPE" 
      TCGA-US-A77J 
"SLC7A9 WILD-TYPE" 
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
"SLC7A9 WILD-TYPE" "SLC7A9 WILD-TYPE" "SLC7A9 WILD-TYPE" "SLC7A9 WILD-TYPE" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"SLC7A9 WILD-TYPE" "SLC7A9 WILD-TYPE" "SLC7A9 WILD-TYPE" "SLC7A9 WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
"SLC7A9 WILD-TYPE" "SLC7A9 WILD-TYPE" "SLC7A9 WILD-TYPE" "SLC7A9 WILD-TYPE" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"SLC7A9 WILD-TYPE" "SLC7A9 WILD-TYPE" "SLC7A9 WILD-TYPE" "SLC7A9 WILD-TYPE" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
"SLC7A9 WILD-TYPE" "SLC7A9 WILD-TYPE" "SLC7A9 WILD-TYPE" "SLC7A9 WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
  "SLC7A9 MUTATED" "SLC7A9 WILD-TYPE" "SLC7A9 WILD-TYPE" "SLC7A9 WILD-TYPE" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"SLC7A9 WILD-TYPE" "SLC7A9 WILD-TYPE" "SLC7A9 WILD-TYPE" "SLC7A9 WILD-TYPE" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
"SLC7A9 WILD-TYPE" "SLC7A9 WILD-TYPE" "SLC7A9 WILD-TYPE" "SLC7A9 WILD-TYPE" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
"SLC7A9 WILD-TYPE"   "SLC7A9 MUTATED" "SLC7A9 WILD-TYPE" "SLC7A9 WILD-TYPE" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
"SLC7A9 WILD-TYPE" "SLC7A9 WILD-TYPE" "SLC7A9 WILD-TYPE" "SLC7A9 WILD-TYPE" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
"SLC7A9 WILD-TYPE" "SLC7A9 WILD-TYPE" "SLC7A9 WILD-TYPE"   "SLC7A9 MUTATED" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
"SLC7A9 WILD-TYPE" "SLC7A9 WILD-TYPE"   "SLC7A9 MUTATED" "SLC7A9 WILD-TYPE" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
"SLC7A9 WILD-TYPE" "SLC7A9 WILD-TYPE" "SLC7A9 WILD-TYPE"   "SLC7A9 MUTATED" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
  "SLC7A9 MUTATED" "SLC7A9 WILD-TYPE" "SLC7A9 WILD-TYPE" "SLC7A9 WILD-TYPE" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"SLC7A9 WILD-TYPE" "SLC7A9 WILD-TYPE" "SLC7A9 WILD-TYPE" "SLC7A9 WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"SLC7A9 WILD-TYPE" "SLC7A9 WILD-TYPE" "SLC7A9 WILD-TYPE" "SLC7A9 WILD-TYPE" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
"SLC7A9 WILD-TYPE" "SLC7A9 WILD-TYPE" "SLC7A9 WILD-TYPE" "SLC7A9 WILD-TYPE" 
      TCGA-US-A77J 
"SLC7A9 WILD-TYPE" 
[1] "hr=" "1.5"
D281V2, continuous
                  vv
clus               STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  SLC7A9 MUTATED          1        0         1         4         0        0
  SLC7A9 WILD-TYPE        0        4        10        47         2        3
D281V3, multiclass
                  vv
clus               T1+T2 T3+T4
  SLC7A9 MUTATED       1     5
  SLC7A9 WILD-TYPE     5    61
D281V4, multiclass
       clus
vv      SLC7A9 MUTATED SLC7A9 WILD-TYPE
  T1+T2              1                5
  T3+T4              5               61
D281V5, binary
                  cls
clus                0  1
  SLC7A9 MUTATED    2  4
  SLC7A9 WILD-TYPE 15 50
[1] "tbl2"
                  cls
clus               [,1] [,2]
  SLC7A9 MUTATED      2    4
  SLC7A9 WILD-TYPE   15   50
   clus
vv  SLC7A9 MUTATED SLC7A9 WILD-TYPE
  0              2               15
  1              4               50
                  vv
clus               M0 M1 MX
  SLC7A9 MUTATED    5  0  1
  SLC7A9 WILD-TYPE 34  3 29
D281V6, multiclass
    clus
vv   SLC7A9 MUTATED SLC7A9 WILD-TYPE
  M0              5               34
  M1              0                3
  MX              1               29
D281V7, binary
                  cls
clus                0  1
  SLC7A9 MUTATED    3  3
  SLC7A9 WILD-TYPE 33 33
[1] "tbl2"
                  cls
clus               [,1] [,2]
  SLC7A9 MUTATED      3    3
  SLC7A9 WILD-TYPE   33   33
        clus
vv       SLC7A9 MUTATED SLC7A9 WILD-TYPE
  FEMALE              3               33
  MALE                3               33
                  vv
clus               PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  SLC7A9 MUTATED                                     5
  SLC7A9 WILD-TYPE                                  60
                  vv
clus               PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  SLC7A9 MUTATED                                       0
  SLC7A9 WILD-TYPE                                     4
                  vv
clus               PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  SLC7A9 MUTATED                                                  1
  SLC7A9 WILD-TYPE                                                1
D281V8, multiclass
                                                  clus
vv                                                 SLC7A9 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                           5
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                         0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA              1
                                                  clus
vv                                                 SLC7A9 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                            60
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                           4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                1
D281V9, continuous
D281V10, continuous
                  vv
clus               R0 R1 RX
  SLC7A9 MUTATED    4  2  0
  SLC7A9 WILD-TYPE 38 22  2
D281V11, multiclass
    clus
vv   SLC7A9 MUTATED SLC7A9 WILD-TYPE
  R0              4               38
  R1              2               22
  RX              0                2
D281V12, continuous

Clustering(282) Variable = CDH10 MUTATION ANALYSIS
D282V1, survival
                 sevent
clus2              0  1
  CDH10 MUTATED    5  6
  CDH10 WILD-TYPE 35 23
  CDH10 MUTATED CDH10 WILD-TYPE 
             11              58 
  CDH10 MUTATED CDH10 WILD-TYPE 
              6              23 
$`CDH10 MUTATED`
TCGA-H6-8124 TCGA-HZ-7924 TCGA-HZ-7926 TCGA-HZ-8005 TCGA-HZ-A4BH TCGA-IB-7651 
       12.89        12.13         0.26         3.95         6.38        19.82 
TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7897 TCGA-PZ-A5RE 
       43.79        15.81        19.66        15.98         8.12 

$`CDH10 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P5 TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR 
        0.13        11.93        12.66         2.47         0.03         5.46 
TCGA-FZ-5920 TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7289 
        2.01        36.20        20.81         7.66        13.02         7.89 
TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7925 TCGA-HZ-8001 
        0.92         0.66         0.13         0.26        11.87         0.62 
TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8636 TCGA-HZ-8638 
        0.79         0.69         0.92         0.53         0.16         2.99 
TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7646 
        0.76         0.95         1.51        11.41        49.38         4.77 
TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 
       21.90        15.35        15.65        27.98         4.04         3.62 
TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP 
       16.04         3.85         0.56        17.16        10.82         9.86 
TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W 
        7.20        15.12         0.26         1.35         4.18         3.62 
TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
       13.68        16.80        14.14        18.67 

  CDH10 MUTATED CDH10 WILD-TYPE 
           0.26            0.03 
  CDH10 MUTATED CDH10 WILD-TYPE 
          43.79           49.38 
  CDH10 MUTATED CDH10 WILD-TYPE 
          12.89            6.28 
[1] "0.3 - 43.8 (12.9)" "0.0 - 49.4 (6.3)" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE"   "CDH10 MUTATED" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE"   "CDH10 MUTATED" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"CDH10 WILD-TYPE"   "CDH10 MUTATED" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"CDH10 WILD-TYPE"   "CDH10 MUTATED" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
  "CDH10 MUTATED" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE"   "CDH10 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
  "CDH10 MUTATED"   "CDH10 MUTATED"   "CDH10 MUTATED" "CDH10 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"CDH10 WILD-TYPE"   "CDH10 MUTATED" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
  "CDH10 MUTATED" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-US-A77J 
"CDH10 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE"   "CDH10 MUTATED" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE"   "CDH10 MUTATED" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"CDH10 WILD-TYPE"   "CDH10 MUTATED" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"CDH10 WILD-TYPE"   "CDH10 MUTATED" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
  "CDH10 MUTATED" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE"   "CDH10 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
  "CDH10 MUTATED"   "CDH10 MUTATED"   "CDH10 MUTATED" "CDH10 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"CDH10 WILD-TYPE"   "CDH10 MUTATED" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
  "CDH10 MUTATED" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-US-A77J 
"CDH10 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE"   "CDH10 MUTATED" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE"   "CDH10 MUTATED" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"CDH10 WILD-TYPE"   "CDH10 MUTATED" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"CDH10 WILD-TYPE"   "CDH10 MUTATED" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
  "CDH10 MUTATED" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE"   "CDH10 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
  "CDH10 MUTATED"   "CDH10 MUTATED"   "CDH10 MUTATED" "CDH10 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"CDH10 WILD-TYPE"   "CDH10 MUTATED" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
  "CDH10 MUTATED" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-US-A77J 
"CDH10 WILD-TYPE" 
[1] "hr=" "1.3"
D282V2, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  CDH10 MUTATED          0        1         2         8         0        0
  CDH10 WILD-TYPE        1        3         9        43         2        3
D282V3, multiclass
                 vv
clus              T1+T2 T3+T4
  CDH10 MUTATED       1    10
  CDH10 WILD-TYPE     5    56
D282V4, multiclass
       clus
vv      CDH10 MUTATED CDH10 WILD-TYPE
  T1+T2             1               5
  T3+T4            10              56
D282V5, binary
                 cls
clus               0  1
  CDH10 MUTATED    3  8
  CDH10 WILD-TYPE 14 46
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CDH10 MUTATED      3    8
  CDH10 WILD-TYPE   14   46
   clus
vv  CDH10 MUTATED CDH10 WILD-TYPE
  0             3              14
  1             8              46
                 vv
clus              M0 M1 MX
  CDH10 MUTATED    6  0  5
  CDH10 WILD-TYPE 33  3 25
D282V6, multiclass
    clus
vv   CDH10 MUTATED CDH10 WILD-TYPE
  M0             6              33
  M1             0               3
  MX             5              25
D282V7, binary
                 cls
clus               0  1
  CDH10 MUTATED    7  4
  CDH10 WILD-TYPE 29 32
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CDH10 MUTATED      7    4
  CDH10 WILD-TYPE   29   32
        clus
vv       CDH10 MUTATED CDH10 WILD-TYPE
  FEMALE             7              29
  MALE               4              32
                 vv
clus              PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  CDH10 MUTATED                                    11
  CDH10 WILD-TYPE                                  54
                 vv
clus              PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  CDH10 MUTATED                                       0
  CDH10 WILD-TYPE                                     4
                 vv
clus              PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  CDH10 MUTATED                                                  0
  CDH10 WILD-TYPE                                                2
D282V8, multiclass
                                                  clus
vv                                                 CDH10 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                         11
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                        0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA             0
                                                  clus
vv                                                 CDH10 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                           54
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                          4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA               2
D282V9, continuous
[1] "Remove cluster labels:" "CDH10 MUTATED"         
clus
  CDH10 MUTATED CDH10 WILD-TYPE 
              2              20 
     TCGA-F2-6880      TCGA-FB-A4P5      TCGA-FB-A4P6      TCGA-FB-A5VM 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-FB-A78T      TCGA-FB-A7DR      TCGA-H6-A45N      TCGA-H8-A6C1 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-IB-7644      TCGA-IB-7649      TCGA-IB-7885      TCGA-IB-7886 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-IB-7887      TCGA-IB-7891      TCGA-IB-8126      TCGA-IB-8127 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-IB-A5SS      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
D282V10, continuous
[1] "Remove cluster labels:" "CDH10 MUTATED"         
clus
  CDH10 MUTATED CDH10 WILD-TYPE 
              2              17 
     TCGA-FB-A4P5      TCGA-FB-A4P6      TCGA-FB-A5VM      TCGA-FB-A78T 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-FB-A7DR      TCGA-H8-A6C1      TCGA-IB-7644      TCGA-IB-7649 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7891      TCGA-IB-8126 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-IB-8127      TCGA-IB-A5SS      TCGA-IB-A6UG      TCGA-LB-A7SX 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-OE-A75W 
"CDH10 WILD-TYPE" 
                 vv
clus              R0 R1 RX
  CDH10 MUTATED    7  2  1
  CDH10 WILD-TYPE 35 22  1
D282V11, multiclass
    clus
vv   CDH10 MUTATED CDH10 WILD-TYPE
  R0             7              35
  R1             2              22
  RX             1               1
D282V12, continuous

Clustering(283) Variable = SNRNP35 MUTATION ANALYSIS
D283V1, survival
                   sevent
clus2                0  1
  SNRNP35 MUTATED    2  2
  SNRNP35 WILD-TYPE 38 27
  SNRNP35 MUTATED SNRNP35 WILD-TYPE 
                4                65 
  SNRNP35 MUTATED SNRNP35 WILD-TYPE 
                2                27 
$`SNRNP35 MUTATED`
TCGA-F2-7276 TCGA-HZ-7918 TCGA-IB-7651 TCGA-IB-7885 
        7.10         0.92        19.82        27.98 

$`SNRNP35 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-A44G TCGA-F2-A44H TCGA-FB-A4P5 
       10.98         9.70        11.84         5.03        19.27         0.13 
TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR TCGA-FZ-5920 
       11.93        12.66         2.47         0.03         5.46         2.01 
TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7289 
       36.20        20.81        12.89         7.66        13.02         7.89 
TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 
        0.66         0.13         0.26        12.13        11.87         0.26 
TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 
        0.62         0.79         0.69         3.95         0.92         0.53 
TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK 
        0.16         2.99         0.76         0.95         6.38         1.51 
TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7652 
       11.41        49.38         4.77        21.90        15.35        15.65 
TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 
        4.04         3.62        43.79        15.81        19.66        16.04 
TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP 
        3.85        15.98         0.56        17.16        10.82         9.86 
TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W 
        7.20        15.12         0.26         1.35         4.18         3.62 
TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
        8.12        13.68        16.80        14.14        18.67 

  SNRNP35 MUTATED SNRNP35 WILD-TYPE 
             0.92              0.03 
  SNRNP35 MUTATED SNRNP35 WILD-TYPE 
            27.98             49.38 
  SNRNP35 MUTATED SNRNP35 WILD-TYPE 
            13.46              7.66 
[1] "0.9 - 28.0 (13.5)" "0.0 - 49.4 (7.7)" 
       TCGA-F2-6879        TCGA-F2-6880        TCGA-F2-7273        TCGA-F2-7276 
"SNRNP35 WILD-TYPE" "SNRNP35 WILD-TYPE" "SNRNP35 WILD-TYPE"   "SNRNP35 MUTATED" 
       TCGA-F2-A44G        TCGA-F2-A44H        TCGA-FB-A4P5        TCGA-FB-A4P6 
"SNRNP35 WILD-TYPE" "SNRNP35 WILD-TYPE" "SNRNP35 WILD-TYPE" "SNRNP35 WILD-TYPE" 
       TCGA-FB-A545        TCGA-FB-A5VM        TCGA-FB-A78T        TCGA-FB-A7DR 
"SNRNP35 WILD-TYPE" "SNRNP35 WILD-TYPE" "SNRNP35 WILD-TYPE" "SNRNP35 WILD-TYPE" 
       TCGA-FZ-5920        TCGA-FZ-5922        TCGA-FZ-5923        TCGA-H6-8124 
"SNRNP35 WILD-TYPE" "SNRNP35 WILD-TYPE" "SNRNP35 WILD-TYPE" "SNRNP35 WILD-TYPE" 
       TCGA-H6-A45N        TCGA-H8-A6C1        TCGA-HZ-7289        TCGA-HZ-7918 
"SNRNP35 WILD-TYPE" "SNRNP35 WILD-TYPE" "SNRNP35 WILD-TYPE"   "SNRNP35 MUTATED" 
       TCGA-HZ-7919        TCGA-HZ-7922        TCGA-HZ-7923        TCGA-HZ-7924 
"SNRNP35 WILD-TYPE" "SNRNP35 WILD-TYPE" "SNRNP35 WILD-TYPE" "SNRNP35 WILD-TYPE" 
       TCGA-HZ-7925        TCGA-HZ-7926        TCGA-HZ-8001        TCGA-HZ-8002 
"SNRNP35 WILD-TYPE" "SNRNP35 WILD-TYPE" "SNRNP35 WILD-TYPE" "SNRNP35 WILD-TYPE" 
       TCGA-HZ-8003        TCGA-HZ-8005        TCGA-HZ-8315        TCGA-HZ-8317 
"SNRNP35 WILD-TYPE" "SNRNP35 WILD-TYPE" "SNRNP35 WILD-TYPE" "SNRNP35 WILD-TYPE" 
       TCGA-HZ-8636        TCGA-HZ-8638        TCGA-HZ-A49G        TCGA-HZ-A49H 
"SNRNP35 WILD-TYPE" "SNRNP35 WILD-TYPE" "SNRNP35 WILD-TYPE" "SNRNP35 WILD-TYPE" 
       TCGA-HZ-A4BH        TCGA-HZ-A4BK        TCGA-IB-7644        TCGA-IB-7645 
"SNRNP35 WILD-TYPE" "SNRNP35 WILD-TYPE" "SNRNP35 WILD-TYPE" "SNRNP35 WILD-TYPE" 
       TCGA-IB-7646        TCGA-IB-7647        TCGA-IB-7649        TCGA-IB-7651 
"SNRNP35 WILD-TYPE" "SNRNP35 WILD-TYPE" "SNRNP35 WILD-TYPE"   "SNRNP35 MUTATED" 
       TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-7886        TCGA-IB-7887 
"SNRNP35 WILD-TYPE"   "SNRNP35 MUTATED" "SNRNP35 WILD-TYPE" "SNRNP35 WILD-TYPE" 
       TCGA-IB-7888        TCGA-IB-7889        TCGA-IB-7890        TCGA-IB-7891 
"SNRNP35 WILD-TYPE" "SNRNP35 WILD-TYPE" "SNRNP35 WILD-TYPE" "SNRNP35 WILD-TYPE" 
       TCGA-IB-7893        TCGA-IB-7897        TCGA-IB-8126        TCGA-IB-8127 
"SNRNP35 WILD-TYPE" "SNRNP35 WILD-TYPE" "SNRNP35 WILD-TYPE" "SNRNP35 WILD-TYPE" 
       TCGA-IB-A5SO        TCGA-IB-A5SP        TCGA-IB-A5SQ        TCGA-IB-A5SS 
"SNRNP35 WILD-TYPE" "SNRNP35 WILD-TYPE" "SNRNP35 WILD-TYPE" "SNRNP35 WILD-TYPE" 
       TCGA-IB-A5ST        TCGA-IB-A6UG        TCGA-LB-A7SX        TCGA-OE-A75W 
"SNRNP35 WILD-TYPE" "SNRNP35 WILD-TYPE" "SNRNP35 WILD-TYPE" "SNRNP35 WILD-TYPE" 
       TCGA-PZ-A5RE        TCGA-Q3-A5QY        TCGA-US-A779        TCGA-US-A77E 
"SNRNP35 WILD-TYPE" "SNRNP35 WILD-TYPE" "SNRNP35 WILD-TYPE" "SNRNP35 WILD-TYPE" 
       TCGA-US-A77J 
"SNRNP35 WILD-TYPE" 
       TCGA-F2-6879        TCGA-F2-6880        TCGA-F2-7273        TCGA-F2-7276 
"SNRNP35 WILD-TYPE" "SNRNP35 WILD-TYPE" "SNRNP35 WILD-TYPE"   "SNRNP35 MUTATED" 
       TCGA-F2-A44G        TCGA-F2-A44H        TCGA-FB-A4P5        TCGA-FB-A4P6 
"SNRNP35 WILD-TYPE" "SNRNP35 WILD-TYPE" "SNRNP35 WILD-TYPE" "SNRNP35 WILD-TYPE" 
       TCGA-FB-A545        TCGA-FB-A5VM        TCGA-FB-A78T        TCGA-FB-A7DR 
"SNRNP35 WILD-TYPE" "SNRNP35 WILD-TYPE" "SNRNP35 WILD-TYPE" "SNRNP35 WILD-TYPE" 
       TCGA-FZ-5920        TCGA-FZ-5922        TCGA-FZ-5923        TCGA-H6-8124 
"SNRNP35 WILD-TYPE" "SNRNP35 WILD-TYPE" "SNRNP35 WILD-TYPE" "SNRNP35 WILD-TYPE" 
       TCGA-H6-A45N        TCGA-H8-A6C1        TCGA-HZ-7289        TCGA-HZ-7918 
"SNRNP35 WILD-TYPE" "SNRNP35 WILD-TYPE" "SNRNP35 WILD-TYPE"   "SNRNP35 MUTATED" 
       TCGA-HZ-7919        TCGA-HZ-7922        TCGA-HZ-7923        TCGA-HZ-7924 
"SNRNP35 WILD-TYPE" "SNRNP35 WILD-TYPE" "SNRNP35 WILD-TYPE" "SNRNP35 WILD-TYPE" 
       TCGA-HZ-7925        TCGA-HZ-7926        TCGA-HZ-8001        TCGA-HZ-8002 
"SNRNP35 WILD-TYPE" "SNRNP35 WILD-TYPE" "SNRNP35 WILD-TYPE" "SNRNP35 WILD-TYPE" 
       TCGA-HZ-8003        TCGA-HZ-8005        TCGA-HZ-8315        TCGA-HZ-8317 
"SNRNP35 WILD-TYPE" "SNRNP35 WILD-TYPE" "SNRNP35 WILD-TYPE" "SNRNP35 WILD-TYPE" 
       TCGA-HZ-8636        TCGA-HZ-8638        TCGA-HZ-A49G        TCGA-HZ-A49H 
"SNRNP35 WILD-TYPE" "SNRNP35 WILD-TYPE" "SNRNP35 WILD-TYPE" "SNRNP35 WILD-TYPE" 
       TCGA-HZ-A4BH        TCGA-HZ-A4BK        TCGA-IB-7644        TCGA-IB-7645 
"SNRNP35 WILD-TYPE" "SNRNP35 WILD-TYPE" "SNRNP35 WILD-TYPE" "SNRNP35 WILD-TYPE" 
       TCGA-IB-7646        TCGA-IB-7647        TCGA-IB-7649        TCGA-IB-7651 
"SNRNP35 WILD-TYPE" "SNRNP35 WILD-TYPE" "SNRNP35 WILD-TYPE"   "SNRNP35 MUTATED" 
       TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-7886        TCGA-IB-7887 
"SNRNP35 WILD-TYPE"   "SNRNP35 MUTATED" "SNRNP35 WILD-TYPE" "SNRNP35 WILD-TYPE" 
       TCGA-IB-7888        TCGA-IB-7889        TCGA-IB-7890        TCGA-IB-7891 
"SNRNP35 WILD-TYPE" "SNRNP35 WILD-TYPE" "SNRNP35 WILD-TYPE" "SNRNP35 WILD-TYPE" 
       TCGA-IB-7893        TCGA-IB-7897        TCGA-IB-8126        TCGA-IB-8127 
"SNRNP35 WILD-TYPE" "SNRNP35 WILD-TYPE" "SNRNP35 WILD-TYPE" "SNRNP35 WILD-TYPE" 
       TCGA-IB-A5SO        TCGA-IB-A5SP        TCGA-IB-A5SQ        TCGA-IB-A5SS 
"SNRNP35 WILD-TYPE" "SNRNP35 WILD-TYPE" "SNRNP35 WILD-TYPE" "SNRNP35 WILD-TYPE" 
       TCGA-IB-A5ST        TCGA-IB-A6UG        TCGA-LB-A7SX        TCGA-OE-A75W 
"SNRNP35 WILD-TYPE" "SNRNP35 WILD-TYPE" "SNRNP35 WILD-TYPE" "SNRNP35 WILD-TYPE" 
       TCGA-PZ-A5RE        TCGA-Q3-A5QY        TCGA-US-A779        TCGA-US-A77E 
"SNRNP35 WILD-TYPE" "SNRNP35 WILD-TYPE" "SNRNP35 WILD-TYPE" "SNRNP35 WILD-TYPE" 
       TCGA-US-A77J 
"SNRNP35 WILD-TYPE" 
       TCGA-F2-6879        TCGA-F2-6880        TCGA-F2-7273        TCGA-F2-7276 
"SNRNP35 WILD-TYPE" "SNRNP35 WILD-TYPE" "SNRNP35 WILD-TYPE"   "SNRNP35 MUTATED" 
       TCGA-F2-A44G        TCGA-F2-A44H        TCGA-FB-A4P5        TCGA-FB-A4P6 
"SNRNP35 WILD-TYPE" "SNRNP35 WILD-TYPE" "SNRNP35 WILD-TYPE" "SNRNP35 WILD-TYPE" 
       TCGA-FB-A545        TCGA-FB-A5VM        TCGA-FB-A78T        TCGA-FB-A7DR 
"SNRNP35 WILD-TYPE" "SNRNP35 WILD-TYPE" "SNRNP35 WILD-TYPE" "SNRNP35 WILD-TYPE" 
       TCGA-FZ-5920        TCGA-FZ-5922        TCGA-FZ-5923        TCGA-H6-8124 
"SNRNP35 WILD-TYPE" "SNRNP35 WILD-TYPE" "SNRNP35 WILD-TYPE" "SNRNP35 WILD-TYPE" 
       TCGA-H6-A45N        TCGA-H8-A6C1        TCGA-HZ-7289        TCGA-HZ-7918 
"SNRNP35 WILD-TYPE" "SNRNP35 WILD-TYPE" "SNRNP35 WILD-TYPE"   "SNRNP35 MUTATED" 
       TCGA-HZ-7919        TCGA-HZ-7922        TCGA-HZ-7923        TCGA-HZ-7924 
"SNRNP35 WILD-TYPE" "SNRNP35 WILD-TYPE" "SNRNP35 WILD-TYPE" "SNRNP35 WILD-TYPE" 
       TCGA-HZ-7925        TCGA-HZ-7926        TCGA-HZ-8001        TCGA-HZ-8002 
"SNRNP35 WILD-TYPE" "SNRNP35 WILD-TYPE" "SNRNP35 WILD-TYPE" "SNRNP35 WILD-TYPE" 
       TCGA-HZ-8003        TCGA-HZ-8005        TCGA-HZ-8315        TCGA-HZ-8317 
"SNRNP35 WILD-TYPE" "SNRNP35 WILD-TYPE" "SNRNP35 WILD-TYPE" "SNRNP35 WILD-TYPE" 
       TCGA-HZ-8636        TCGA-HZ-8638        TCGA-HZ-A49G        TCGA-HZ-A49H 
"SNRNP35 WILD-TYPE" "SNRNP35 WILD-TYPE" "SNRNP35 WILD-TYPE" "SNRNP35 WILD-TYPE" 
       TCGA-HZ-A4BH        TCGA-HZ-A4BK        TCGA-IB-7644        TCGA-IB-7645 
"SNRNP35 WILD-TYPE" "SNRNP35 WILD-TYPE" "SNRNP35 WILD-TYPE" "SNRNP35 WILD-TYPE" 
       TCGA-IB-7646        TCGA-IB-7647        TCGA-IB-7649        TCGA-IB-7651 
"SNRNP35 WILD-TYPE" "SNRNP35 WILD-TYPE" "SNRNP35 WILD-TYPE"   "SNRNP35 MUTATED" 
       TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-7886        TCGA-IB-7887 
"SNRNP35 WILD-TYPE"   "SNRNP35 MUTATED" "SNRNP35 WILD-TYPE" "SNRNP35 WILD-TYPE" 
       TCGA-IB-7888        TCGA-IB-7889        TCGA-IB-7890        TCGA-IB-7891 
"SNRNP35 WILD-TYPE" "SNRNP35 WILD-TYPE" "SNRNP35 WILD-TYPE" "SNRNP35 WILD-TYPE" 
       TCGA-IB-7893        TCGA-IB-7897        TCGA-IB-8126        TCGA-IB-8127 
"SNRNP35 WILD-TYPE" "SNRNP35 WILD-TYPE" "SNRNP35 WILD-TYPE" "SNRNP35 WILD-TYPE" 
       TCGA-IB-A5SO        TCGA-IB-A5SP        TCGA-IB-A5SQ        TCGA-IB-A5SS 
"SNRNP35 WILD-TYPE" "SNRNP35 WILD-TYPE" "SNRNP35 WILD-TYPE" "SNRNP35 WILD-TYPE" 
       TCGA-IB-A5ST        TCGA-IB-A6UG        TCGA-LB-A7SX        TCGA-OE-A75W 
"SNRNP35 WILD-TYPE" "SNRNP35 WILD-TYPE" "SNRNP35 WILD-TYPE" "SNRNP35 WILD-TYPE" 
       TCGA-PZ-A5RE        TCGA-Q3-A5QY        TCGA-US-A779        TCGA-US-A77E 
"SNRNP35 WILD-TYPE" "SNRNP35 WILD-TYPE" "SNRNP35 WILD-TYPE" "SNRNP35 WILD-TYPE" 
       TCGA-US-A77J 
"SNRNP35 WILD-TYPE" 
[1] "hr=" "1.5"
D283V2, continuous
                   vv
clus                STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  SNRNP35 MUTATED          0        0         0         4         0        0
  SNRNP35 WILD-TYPE        1        4        11        47         2        3
D283V3, multiclass
                   vv
clus                T1+T2 T3+T4
  SNRNP35 MUTATED       0     4
  SNRNP35 WILD-TYPE     6    62
D283V4, multiclass
       clus
vv      SNRNP35 MUTATED SNRNP35 WILD-TYPE
  T1+T2               0                 6
  T3+T4               4                62
D283V5, binary
                   cls
clus                 0  1
  SNRNP35 MUTATED    0  4
  SNRNP35 WILD-TYPE 17 50
[1] "tbl2"
                   cls
clus                [,1] [,2]
  SNRNP35 MUTATED      0    4
  SNRNP35 WILD-TYPE   17   50
   clus
vv  SNRNP35 MUTATED SNRNP35 WILD-TYPE
  0               0                17
  1               4                50
                   vv
clus                M0 M1 MX
  SNRNP35 MUTATED    4  0  0
  SNRNP35 WILD-TYPE 35  3 30
D283V6, multiclass
    clus
vv   SNRNP35 MUTATED SNRNP35 WILD-TYPE
  M0               4                35
  M1               0                 3
  MX               0                30
D283V7, binary
                   cls
clus                 0  1
  SNRNP35 MUTATED    2  2
  SNRNP35 WILD-TYPE 34 34
[1] "tbl2"
                   cls
clus                [,1] [,2]
  SNRNP35 MUTATED      2    2
  SNRNP35 WILD-TYPE   34   34
        clus
vv       SNRNP35 MUTATED SNRNP35 WILD-TYPE
  FEMALE               2                34
  MALE                 2                34
                   vv
clus                PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  SNRNP35 MUTATED                                     4
  SNRNP35 WILD-TYPE                                  61
                   vv
clus                PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  SNRNP35 MUTATED                                       0
  SNRNP35 WILD-TYPE                                     4
                   vv
clus                PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  SNRNP35 MUTATED                                                  0
  SNRNP35 WILD-TYPE                                                2
D283V8, multiclass
                                                  clus
vv                                                 SNRNP35 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                            4
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                          0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA               0
                                                  clus
vv                                                 SNRNP35 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                             61
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                            4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                 2
D283V9, continuous
[1] "Remove cluster labels:" "SNRNP35 MUTATED"       
clus
  SNRNP35 MUTATED SNRNP35 WILD-TYPE 
                2                20 
       TCGA-F2-6880        TCGA-FB-A4P5        TCGA-FB-A4P6        TCGA-FB-A5VM 
"SNRNP35 WILD-TYPE" "SNRNP35 WILD-TYPE" "SNRNP35 WILD-TYPE" "SNRNP35 WILD-TYPE" 
       TCGA-FB-A78T        TCGA-FB-A7DR        TCGA-H6-8124        TCGA-H6-A45N 
"SNRNP35 WILD-TYPE" "SNRNP35 WILD-TYPE" "SNRNP35 WILD-TYPE" "SNRNP35 WILD-TYPE" 
       TCGA-H8-A6C1        TCGA-IB-7644        TCGA-IB-7649        TCGA-IB-7886 
"SNRNP35 WILD-TYPE" "SNRNP35 WILD-TYPE" "SNRNP35 WILD-TYPE" "SNRNP35 WILD-TYPE" 
       TCGA-IB-7887        TCGA-IB-7891        TCGA-IB-8126        TCGA-IB-8127 
"SNRNP35 WILD-TYPE" "SNRNP35 WILD-TYPE" "SNRNP35 WILD-TYPE" "SNRNP35 WILD-TYPE" 
       TCGA-IB-A5SS        TCGA-IB-A6UG        TCGA-LB-A7SX        TCGA-OE-A75W 
"SNRNP35 WILD-TYPE" "SNRNP35 WILD-TYPE" "SNRNP35 WILD-TYPE" "SNRNP35 WILD-TYPE" 
D283V10, continuous
[1] "Remove cluster labels:" "SNRNP35 MUTATED"       
clus
  SNRNP35 MUTATED SNRNP35 WILD-TYPE 
                2                17 
       TCGA-FB-A4P5        TCGA-FB-A4P6        TCGA-FB-A5VM        TCGA-FB-A78T 
"SNRNP35 WILD-TYPE" "SNRNP35 WILD-TYPE" "SNRNP35 WILD-TYPE" "SNRNP35 WILD-TYPE" 
       TCGA-FB-A7DR        TCGA-H6-8124        TCGA-H8-A6C1        TCGA-IB-7644 
"SNRNP35 WILD-TYPE" "SNRNP35 WILD-TYPE" "SNRNP35 WILD-TYPE" "SNRNP35 WILD-TYPE" 
       TCGA-IB-7649        TCGA-IB-7886        TCGA-IB-7891        TCGA-IB-8126 
"SNRNP35 WILD-TYPE" "SNRNP35 WILD-TYPE" "SNRNP35 WILD-TYPE" "SNRNP35 WILD-TYPE" 
       TCGA-IB-8127        TCGA-IB-A5SS        TCGA-IB-A6UG        TCGA-LB-A7SX 
"SNRNP35 WILD-TYPE" "SNRNP35 WILD-TYPE" "SNRNP35 WILD-TYPE" "SNRNP35 WILD-TYPE" 
       TCGA-OE-A75W 
"SNRNP35 WILD-TYPE" 
                   vv
clus                R0 R1 RX
  SNRNP35 MUTATED    4  0  0
  SNRNP35 WILD-TYPE 38 24  2
D283V11, multiclass
    clus
vv   SNRNP35 MUTATED SNRNP35 WILD-TYPE
  R0               4                38
  R1               0                24
  RX               0                 2
D283V12, continuous

Clustering(284) Variable = SPINT1 MUTATION ANALYSIS
D284V1, survival
                  sevent
clus2               0  1
  SPINT1 MUTATED    4  1
  SPINT1 WILD-TYPE 36 28
  SPINT1 MUTATED SPINT1 WILD-TYPE 
               5               64 
  SPINT1 MUTATED SPINT1 WILD-TYPE 
               1               28 
$`SPINT1 MUTATED`
TCGA-HZ-8317 TCGA-IB-7652 TCGA-IB-7897 TCGA-IB-8127 TCGA-OE-A75W 
        0.53        15.65        15.98        17.16         3.62 

$`SPINT1 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P5 TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR 
        0.13        11.93        12.66         2.47         0.03         5.46 
TCGA-FZ-5920 TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 
        2.01        36.20        20.81        12.89         7.66        13.02 
TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 
        7.89         0.92         0.66         0.13         0.26        12.13 
TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 
       11.87         0.26         0.62         0.79         0.69         3.95 
TCGA-HZ-8315 TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH 
        0.92         0.16         2.99         0.76         0.95         6.38 
TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 
        1.51        11.41        49.38         4.77        21.90        15.35 
TCGA-IB-7651 TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 
       19.82        27.98         4.04         3.62        43.79        15.81 
TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-8126 TCGA-IB-A5SO TCGA-IB-A5SP 
       19.66        16.04         3.85         0.56        10.82         9.86 
TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX TCGA-PZ-A5RE 
        7.20        15.12         0.26         1.35         4.18         8.12 
TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
       13.68        16.80        14.14        18.67 

  SPINT1 MUTATED SPINT1 WILD-TYPE 
            0.53             0.03 
  SPINT1 MUTATED SPINT1 WILD-TYPE 
           17.16            49.38 
  SPINT1 MUTATED SPINT1 WILD-TYPE 
           15.65             7.43 
[1] "0.5 - 17.2 (15.7)" "0.0 - 49.4 (7.4)" 
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
"SPINT1 WILD-TYPE" "SPINT1 WILD-TYPE" "SPINT1 WILD-TYPE" "SPINT1 WILD-TYPE" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"SPINT1 WILD-TYPE" "SPINT1 WILD-TYPE" "SPINT1 WILD-TYPE" "SPINT1 WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
"SPINT1 WILD-TYPE" "SPINT1 WILD-TYPE" "SPINT1 WILD-TYPE" "SPINT1 WILD-TYPE" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"SPINT1 WILD-TYPE" "SPINT1 WILD-TYPE" "SPINT1 WILD-TYPE" "SPINT1 WILD-TYPE" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
"SPINT1 WILD-TYPE" "SPINT1 WILD-TYPE" "SPINT1 WILD-TYPE" "SPINT1 WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
"SPINT1 WILD-TYPE" "SPINT1 WILD-TYPE" "SPINT1 WILD-TYPE" "SPINT1 WILD-TYPE" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"SPINT1 WILD-TYPE" "SPINT1 WILD-TYPE" "SPINT1 WILD-TYPE" "SPINT1 WILD-TYPE" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
"SPINT1 WILD-TYPE" "SPINT1 WILD-TYPE" "SPINT1 WILD-TYPE"   "SPINT1 MUTATED" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
"SPINT1 WILD-TYPE" "SPINT1 WILD-TYPE" "SPINT1 WILD-TYPE" "SPINT1 WILD-TYPE" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
"SPINT1 WILD-TYPE" "SPINT1 WILD-TYPE" "SPINT1 WILD-TYPE" "SPINT1 WILD-TYPE" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
"SPINT1 WILD-TYPE" "SPINT1 WILD-TYPE" "SPINT1 WILD-TYPE" "SPINT1 WILD-TYPE" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
  "SPINT1 MUTATED" "SPINT1 WILD-TYPE" "SPINT1 WILD-TYPE" "SPINT1 WILD-TYPE" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
"SPINT1 WILD-TYPE" "SPINT1 WILD-TYPE" "SPINT1 WILD-TYPE" "SPINT1 WILD-TYPE" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
"SPINT1 WILD-TYPE"   "SPINT1 MUTATED" "SPINT1 WILD-TYPE"   "SPINT1 MUTATED" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"SPINT1 WILD-TYPE" "SPINT1 WILD-TYPE" "SPINT1 WILD-TYPE" "SPINT1 WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"SPINT1 WILD-TYPE" "SPINT1 WILD-TYPE" "SPINT1 WILD-TYPE"   "SPINT1 MUTATED" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
"SPINT1 WILD-TYPE" "SPINT1 WILD-TYPE" "SPINT1 WILD-TYPE" "SPINT1 WILD-TYPE" 
      TCGA-US-A77J 
"SPINT1 WILD-TYPE" 
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
"SPINT1 WILD-TYPE" "SPINT1 WILD-TYPE" "SPINT1 WILD-TYPE" "SPINT1 WILD-TYPE" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"SPINT1 WILD-TYPE" "SPINT1 WILD-TYPE" "SPINT1 WILD-TYPE" "SPINT1 WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
"SPINT1 WILD-TYPE" "SPINT1 WILD-TYPE" "SPINT1 WILD-TYPE" "SPINT1 WILD-TYPE" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"SPINT1 WILD-TYPE" "SPINT1 WILD-TYPE" "SPINT1 WILD-TYPE" "SPINT1 WILD-TYPE" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
"SPINT1 WILD-TYPE" "SPINT1 WILD-TYPE" "SPINT1 WILD-TYPE" "SPINT1 WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
"SPINT1 WILD-TYPE" "SPINT1 WILD-TYPE" "SPINT1 WILD-TYPE" "SPINT1 WILD-TYPE" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"SPINT1 WILD-TYPE" "SPINT1 WILD-TYPE" "SPINT1 WILD-TYPE" "SPINT1 WILD-TYPE" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
"SPINT1 WILD-TYPE" "SPINT1 WILD-TYPE" "SPINT1 WILD-TYPE"   "SPINT1 MUTATED" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
"SPINT1 WILD-TYPE" "SPINT1 WILD-TYPE" "SPINT1 WILD-TYPE" "SPINT1 WILD-TYPE" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
"SPINT1 WILD-TYPE" "SPINT1 WILD-TYPE" "SPINT1 WILD-TYPE" "SPINT1 WILD-TYPE" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
"SPINT1 WILD-TYPE" "SPINT1 WILD-TYPE" "SPINT1 WILD-TYPE" "SPINT1 WILD-TYPE" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
  "SPINT1 MUTATED" "SPINT1 WILD-TYPE" "SPINT1 WILD-TYPE" "SPINT1 WILD-TYPE" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
"SPINT1 WILD-TYPE" "SPINT1 WILD-TYPE" "SPINT1 WILD-TYPE" "SPINT1 WILD-TYPE" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
"SPINT1 WILD-TYPE"   "SPINT1 MUTATED" "SPINT1 WILD-TYPE"   "SPINT1 MUTATED" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"SPINT1 WILD-TYPE" "SPINT1 WILD-TYPE" "SPINT1 WILD-TYPE" "SPINT1 WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"SPINT1 WILD-TYPE" "SPINT1 WILD-TYPE" "SPINT1 WILD-TYPE"   "SPINT1 MUTATED" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
"SPINT1 WILD-TYPE" "SPINT1 WILD-TYPE" "SPINT1 WILD-TYPE" "SPINT1 WILD-TYPE" 
      TCGA-US-A77J 
"SPINT1 WILD-TYPE" 
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
"SPINT1 WILD-TYPE" "SPINT1 WILD-TYPE" "SPINT1 WILD-TYPE" "SPINT1 WILD-TYPE" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"SPINT1 WILD-TYPE" "SPINT1 WILD-TYPE" "SPINT1 WILD-TYPE" "SPINT1 WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
"SPINT1 WILD-TYPE" "SPINT1 WILD-TYPE" "SPINT1 WILD-TYPE" "SPINT1 WILD-TYPE" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"SPINT1 WILD-TYPE" "SPINT1 WILD-TYPE" "SPINT1 WILD-TYPE" "SPINT1 WILD-TYPE" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
"SPINT1 WILD-TYPE" "SPINT1 WILD-TYPE" "SPINT1 WILD-TYPE" "SPINT1 WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
"SPINT1 WILD-TYPE" "SPINT1 WILD-TYPE" "SPINT1 WILD-TYPE" "SPINT1 WILD-TYPE" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"SPINT1 WILD-TYPE" "SPINT1 WILD-TYPE" "SPINT1 WILD-TYPE" "SPINT1 WILD-TYPE" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
"SPINT1 WILD-TYPE" "SPINT1 WILD-TYPE" "SPINT1 WILD-TYPE"   "SPINT1 MUTATED" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
"SPINT1 WILD-TYPE" "SPINT1 WILD-TYPE" "SPINT1 WILD-TYPE" "SPINT1 WILD-TYPE" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
"SPINT1 WILD-TYPE" "SPINT1 WILD-TYPE" "SPINT1 WILD-TYPE" "SPINT1 WILD-TYPE" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
"SPINT1 WILD-TYPE" "SPINT1 WILD-TYPE" "SPINT1 WILD-TYPE" "SPINT1 WILD-TYPE" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
  "SPINT1 MUTATED" "SPINT1 WILD-TYPE" "SPINT1 WILD-TYPE" "SPINT1 WILD-TYPE" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
"SPINT1 WILD-TYPE" "SPINT1 WILD-TYPE" "SPINT1 WILD-TYPE" "SPINT1 WILD-TYPE" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
"SPINT1 WILD-TYPE"   "SPINT1 MUTATED" "SPINT1 WILD-TYPE"   "SPINT1 MUTATED" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"SPINT1 WILD-TYPE" "SPINT1 WILD-TYPE" "SPINT1 WILD-TYPE" "SPINT1 WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"SPINT1 WILD-TYPE" "SPINT1 WILD-TYPE" "SPINT1 WILD-TYPE"   "SPINT1 MUTATED" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
"SPINT1 WILD-TYPE" "SPINT1 WILD-TYPE" "SPINT1 WILD-TYPE" "SPINT1 WILD-TYPE" 
      TCGA-US-A77J 
"SPINT1 WILD-TYPE" 
[1] "hr=" "2.2"
D284V2, continuous
                  vv
clus               STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  SPINT1 MUTATED          0        0         1         4         0        0
  SPINT1 WILD-TYPE        1        4        10        47         2        3
D284V3, multiclass
                  vv
clus               T1+T2 T3+T4
  SPINT1 MUTATED       0     5
  SPINT1 WILD-TYPE     6    61
D284V4, multiclass
       clus
vv      SPINT1 MUTATED SPINT1 WILD-TYPE
  T1+T2              0                6
  T3+T4              5               61
D284V5, binary
                  cls
clus                0  1
  SPINT1 MUTATED    1  4
  SPINT1 WILD-TYPE 16 50
[1] "tbl2"
                  cls
clus               [,1] [,2]
  SPINT1 MUTATED      1    4
  SPINT1 WILD-TYPE   16   50
   clus
vv  SPINT1 MUTATED SPINT1 WILD-TYPE
  0              1               16
  1              4               50
                  vv
clus               M0 M1 MX
  SPINT1 MUTATED    4  0  1
  SPINT1 WILD-TYPE 35  3 29
D284V6, multiclass
    clus
vv   SPINT1 MUTATED SPINT1 WILD-TYPE
  M0              4               35
  M1              0                3
  MX              1               29
D284V7, binary
                  cls
clus                0  1
  SPINT1 MUTATED    3  2
  SPINT1 WILD-TYPE 33 34
[1] "tbl2"
                  cls
clus               [,1] [,2]
  SPINT1 MUTATED      3    2
  SPINT1 WILD-TYPE   33   34
        clus
vv       SPINT1 MUTATED SPINT1 WILD-TYPE
  FEMALE              3               33
  MALE                2               34
                  vv
clus               PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  SPINT1 MUTATED                                     5
  SPINT1 WILD-TYPE                                  60
                  vv
clus               PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  SPINT1 MUTATED                                       0
  SPINT1 WILD-TYPE                                     4
                  vv
clus               PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  SPINT1 MUTATED                                                  0
  SPINT1 WILD-TYPE                                                2
D284V8, multiclass
                                                  clus
vv                                                 SPINT1 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                           5
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                         0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA              0
                                                  clus
vv                                                 SPINT1 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                            60
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                           4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                2
D284V9, continuous
[1] "Remove cluster labels:" "SPINT1 MUTATED"        
clus
  SPINT1 MUTATED SPINT1 WILD-TYPE 
               2               20 
      TCGA-F2-6880       TCGA-FB-A4P5       TCGA-FB-A4P6       TCGA-FB-A5VM 
"SPINT1 WILD-TYPE" "SPINT1 WILD-TYPE" "SPINT1 WILD-TYPE" "SPINT1 WILD-TYPE" 
      TCGA-FB-A78T       TCGA-FB-A7DR       TCGA-H6-8124       TCGA-H6-A45N 
"SPINT1 WILD-TYPE" "SPINT1 WILD-TYPE" "SPINT1 WILD-TYPE" "SPINT1 WILD-TYPE" 
      TCGA-H8-A6C1       TCGA-IB-7644       TCGA-IB-7649       TCGA-IB-7651 
"SPINT1 WILD-TYPE" "SPINT1 WILD-TYPE" "SPINT1 WILD-TYPE" "SPINT1 WILD-TYPE" 
      TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887       TCGA-IB-7891 
"SPINT1 WILD-TYPE" "SPINT1 WILD-TYPE" "SPINT1 WILD-TYPE" "SPINT1 WILD-TYPE" 
      TCGA-IB-8126       TCGA-IB-A5SS       TCGA-IB-A6UG       TCGA-LB-A7SX 
"SPINT1 WILD-TYPE" "SPINT1 WILD-TYPE" "SPINT1 WILD-TYPE" "SPINT1 WILD-TYPE" 
D284V10, continuous
[1] "Remove cluster labels:" "SPINT1 MUTATED"        
clus
  SPINT1 MUTATED SPINT1 WILD-TYPE 
               2               17 
      TCGA-FB-A4P5       TCGA-FB-A4P6       TCGA-FB-A5VM       TCGA-FB-A78T 
"SPINT1 WILD-TYPE" "SPINT1 WILD-TYPE" "SPINT1 WILD-TYPE" "SPINT1 WILD-TYPE" 
      TCGA-FB-A7DR       TCGA-H6-8124       TCGA-H8-A6C1       TCGA-IB-7644 
"SPINT1 WILD-TYPE" "SPINT1 WILD-TYPE" "SPINT1 WILD-TYPE" "SPINT1 WILD-TYPE" 
      TCGA-IB-7649       TCGA-IB-7651       TCGA-IB-7885       TCGA-IB-7886 
"SPINT1 WILD-TYPE" "SPINT1 WILD-TYPE" "SPINT1 WILD-TYPE" "SPINT1 WILD-TYPE" 
      TCGA-IB-7891       TCGA-IB-8126       TCGA-IB-A5SS       TCGA-IB-A6UG 
"SPINT1 WILD-TYPE" "SPINT1 WILD-TYPE" "SPINT1 WILD-TYPE" "SPINT1 WILD-TYPE" 
      TCGA-LB-A7SX 
"SPINT1 WILD-TYPE" 
                  vv
clus               R0 R1 RX
  SPINT1 MUTATED    2  3  0
  SPINT1 WILD-TYPE 40 21  2
D284V11, multiclass
    clus
vv   SPINT1 MUTATED SPINT1 WILD-TYPE
  R0              2               40
  R1              3               21
  RX              0                2
D284V12, continuous

Clustering(285) Variable = SMARCA2 MUTATION ANALYSIS
D285V1, survival
                   sevent
clus2                0  1
  SMARCA2 MUTATED    4  2
  SMARCA2 WILD-TYPE 36 27
  SMARCA2 MUTATED SMARCA2 WILD-TYPE 
                6                63 
  SMARCA2 MUTATED SMARCA2 WILD-TYPE 
                2                27 
$`SMARCA2 MUTATED`
TCGA-FB-A5VM TCGA-HZ-7923 TCGA-HZ-8317 TCGA-IB-7651 TCGA-PZ-A5RE TCGA-US-A77J 
        2.47         0.26         0.53        19.82         8.12        18.67 

$`SMARCA2 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P5 TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A78T TCGA-FB-A7DR TCGA-FZ-5920 
        0.13        11.93        12.66         0.03         5.46         2.01 
TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7289 
       36.20        20.81        12.89         7.66        13.02         7.89 
TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 
        0.92         0.66         0.13        12.13        11.87         0.26 
TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8636 
        0.62         0.79         0.69         3.95         0.92         0.16 
TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 
        2.99         0.76         0.95         6.38         1.51        11.41 
TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7652 TCGA-IB-7885 
       49.38         4.77        21.90        15.35        15.65        27.98 
TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 
        4.04         3.62        43.79        15.81        19.66        16.04 
TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP 
        3.85        15.98         0.56        17.16        10.82         9.86 
TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W 
        7.20        15.12         0.26         1.35         4.18         3.62 
TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E 
       13.68        16.80        14.14 

  SMARCA2 MUTATED SMARCA2 WILD-TYPE 
             0.26              0.03 
  SMARCA2 MUTATED SMARCA2 WILD-TYPE 
            19.82             49.38 
  SMARCA2 MUTATED SMARCA2 WILD-TYPE 
            5.295             7.660 
[1] "0.3 - 19.8 (5.3)" "0.0 - 49.4 (7.7)"
       TCGA-F2-6879        TCGA-F2-6880        TCGA-F2-7273        TCGA-F2-7276 
"SMARCA2 WILD-TYPE" "SMARCA2 WILD-TYPE" "SMARCA2 WILD-TYPE" "SMARCA2 WILD-TYPE" 
       TCGA-F2-A44G        TCGA-F2-A44H        TCGA-FB-A4P5        TCGA-FB-A4P6 
"SMARCA2 WILD-TYPE" "SMARCA2 WILD-TYPE" "SMARCA2 WILD-TYPE" "SMARCA2 WILD-TYPE" 
       TCGA-FB-A545        TCGA-FB-A5VM        TCGA-FB-A78T        TCGA-FB-A7DR 
"SMARCA2 WILD-TYPE"   "SMARCA2 MUTATED" "SMARCA2 WILD-TYPE" "SMARCA2 WILD-TYPE" 
       TCGA-FZ-5920        TCGA-FZ-5922        TCGA-FZ-5923        TCGA-H6-8124 
"SMARCA2 WILD-TYPE" "SMARCA2 WILD-TYPE" "SMARCA2 WILD-TYPE" "SMARCA2 WILD-TYPE" 
       TCGA-H6-A45N        TCGA-H8-A6C1        TCGA-HZ-7289        TCGA-HZ-7918 
"SMARCA2 WILD-TYPE" "SMARCA2 WILD-TYPE" "SMARCA2 WILD-TYPE" "SMARCA2 WILD-TYPE" 
       TCGA-HZ-7919        TCGA-HZ-7922        TCGA-HZ-7923        TCGA-HZ-7924 
"SMARCA2 WILD-TYPE" "SMARCA2 WILD-TYPE"   "SMARCA2 MUTATED" "SMARCA2 WILD-TYPE" 
       TCGA-HZ-7925        TCGA-HZ-7926        TCGA-HZ-8001        TCGA-HZ-8002 
"SMARCA2 WILD-TYPE" "SMARCA2 WILD-TYPE" "SMARCA2 WILD-TYPE" "SMARCA2 WILD-TYPE" 
       TCGA-HZ-8003        TCGA-HZ-8005        TCGA-HZ-8315        TCGA-HZ-8317 
"SMARCA2 WILD-TYPE" "SMARCA2 WILD-TYPE" "SMARCA2 WILD-TYPE"   "SMARCA2 MUTATED" 
       TCGA-HZ-8636        TCGA-HZ-8638        TCGA-HZ-A49G        TCGA-HZ-A49H 
"SMARCA2 WILD-TYPE" "SMARCA2 WILD-TYPE" "SMARCA2 WILD-TYPE" "SMARCA2 WILD-TYPE" 
       TCGA-HZ-A4BH        TCGA-HZ-A4BK        TCGA-IB-7644        TCGA-IB-7645 
"SMARCA2 WILD-TYPE" "SMARCA2 WILD-TYPE" "SMARCA2 WILD-TYPE" "SMARCA2 WILD-TYPE" 
       TCGA-IB-7646        TCGA-IB-7647        TCGA-IB-7649        TCGA-IB-7651 
"SMARCA2 WILD-TYPE" "SMARCA2 WILD-TYPE" "SMARCA2 WILD-TYPE"   "SMARCA2 MUTATED" 
       TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-7886        TCGA-IB-7887 
"SMARCA2 WILD-TYPE" "SMARCA2 WILD-TYPE" "SMARCA2 WILD-TYPE" "SMARCA2 WILD-TYPE" 
       TCGA-IB-7888        TCGA-IB-7889        TCGA-IB-7890        TCGA-IB-7891 
"SMARCA2 WILD-TYPE" "SMARCA2 WILD-TYPE" "SMARCA2 WILD-TYPE" "SMARCA2 WILD-TYPE" 
       TCGA-IB-7893        TCGA-IB-7897        TCGA-IB-8126        TCGA-IB-8127 
"SMARCA2 WILD-TYPE" "SMARCA2 WILD-TYPE" "SMARCA2 WILD-TYPE" "SMARCA2 WILD-TYPE" 
       TCGA-IB-A5SO        TCGA-IB-A5SP        TCGA-IB-A5SQ        TCGA-IB-A5SS 
"SMARCA2 WILD-TYPE" "SMARCA2 WILD-TYPE" "SMARCA2 WILD-TYPE" "SMARCA2 WILD-TYPE" 
       TCGA-IB-A5ST        TCGA-IB-A6UG        TCGA-LB-A7SX        TCGA-OE-A75W 
"SMARCA2 WILD-TYPE" "SMARCA2 WILD-TYPE" "SMARCA2 WILD-TYPE" "SMARCA2 WILD-TYPE" 
       TCGA-PZ-A5RE        TCGA-Q3-A5QY        TCGA-US-A779        TCGA-US-A77E 
  "SMARCA2 MUTATED" "SMARCA2 WILD-TYPE" "SMARCA2 WILD-TYPE" "SMARCA2 WILD-TYPE" 
       TCGA-US-A77J 
  "SMARCA2 MUTATED" 
       TCGA-F2-6879        TCGA-F2-6880        TCGA-F2-7273        TCGA-F2-7276 
"SMARCA2 WILD-TYPE" "SMARCA2 WILD-TYPE" "SMARCA2 WILD-TYPE" "SMARCA2 WILD-TYPE" 
       TCGA-F2-A44G        TCGA-F2-A44H        TCGA-FB-A4P5        TCGA-FB-A4P6 
"SMARCA2 WILD-TYPE" "SMARCA2 WILD-TYPE" "SMARCA2 WILD-TYPE" "SMARCA2 WILD-TYPE" 
       TCGA-FB-A545        TCGA-FB-A5VM        TCGA-FB-A78T        TCGA-FB-A7DR 
"SMARCA2 WILD-TYPE"   "SMARCA2 MUTATED" "SMARCA2 WILD-TYPE" "SMARCA2 WILD-TYPE" 
       TCGA-FZ-5920        TCGA-FZ-5922        TCGA-FZ-5923        TCGA-H6-8124 
"SMARCA2 WILD-TYPE" "SMARCA2 WILD-TYPE" "SMARCA2 WILD-TYPE" "SMARCA2 WILD-TYPE" 
       TCGA-H6-A45N        TCGA-H8-A6C1        TCGA-HZ-7289        TCGA-HZ-7918 
"SMARCA2 WILD-TYPE" "SMARCA2 WILD-TYPE" "SMARCA2 WILD-TYPE" "SMARCA2 WILD-TYPE" 
       TCGA-HZ-7919        TCGA-HZ-7922        TCGA-HZ-7923        TCGA-HZ-7924 
"SMARCA2 WILD-TYPE" "SMARCA2 WILD-TYPE"   "SMARCA2 MUTATED" "SMARCA2 WILD-TYPE" 
       TCGA-HZ-7925        TCGA-HZ-7926        TCGA-HZ-8001        TCGA-HZ-8002 
"SMARCA2 WILD-TYPE" "SMARCA2 WILD-TYPE" "SMARCA2 WILD-TYPE" "SMARCA2 WILD-TYPE" 
       TCGA-HZ-8003        TCGA-HZ-8005        TCGA-HZ-8315        TCGA-HZ-8317 
"SMARCA2 WILD-TYPE" "SMARCA2 WILD-TYPE" "SMARCA2 WILD-TYPE"   "SMARCA2 MUTATED" 
       TCGA-HZ-8636        TCGA-HZ-8638        TCGA-HZ-A49G        TCGA-HZ-A49H 
"SMARCA2 WILD-TYPE" "SMARCA2 WILD-TYPE" "SMARCA2 WILD-TYPE" "SMARCA2 WILD-TYPE" 
       TCGA-HZ-A4BH        TCGA-HZ-A4BK        TCGA-IB-7644        TCGA-IB-7645 
"SMARCA2 WILD-TYPE" "SMARCA2 WILD-TYPE" "SMARCA2 WILD-TYPE" "SMARCA2 WILD-TYPE" 
       TCGA-IB-7646        TCGA-IB-7647        TCGA-IB-7649        TCGA-IB-7651 
"SMARCA2 WILD-TYPE" "SMARCA2 WILD-TYPE" "SMARCA2 WILD-TYPE"   "SMARCA2 MUTATED" 
       TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-7886        TCGA-IB-7887 
"SMARCA2 WILD-TYPE" "SMARCA2 WILD-TYPE" "SMARCA2 WILD-TYPE" "SMARCA2 WILD-TYPE" 
       TCGA-IB-7888        TCGA-IB-7889        TCGA-IB-7890        TCGA-IB-7891 
"SMARCA2 WILD-TYPE" "SMARCA2 WILD-TYPE" "SMARCA2 WILD-TYPE" "SMARCA2 WILD-TYPE" 
       TCGA-IB-7893        TCGA-IB-7897        TCGA-IB-8126        TCGA-IB-8127 
"SMARCA2 WILD-TYPE" "SMARCA2 WILD-TYPE" "SMARCA2 WILD-TYPE" "SMARCA2 WILD-TYPE" 
       TCGA-IB-A5SO        TCGA-IB-A5SP        TCGA-IB-A5SQ        TCGA-IB-A5SS 
"SMARCA2 WILD-TYPE" "SMARCA2 WILD-TYPE" "SMARCA2 WILD-TYPE" "SMARCA2 WILD-TYPE" 
       TCGA-IB-A5ST        TCGA-IB-A6UG        TCGA-LB-A7SX        TCGA-OE-A75W 
"SMARCA2 WILD-TYPE" "SMARCA2 WILD-TYPE" "SMARCA2 WILD-TYPE" "SMARCA2 WILD-TYPE" 
       TCGA-PZ-A5RE        TCGA-Q3-A5QY        TCGA-US-A779        TCGA-US-A77E 
  "SMARCA2 MUTATED" "SMARCA2 WILD-TYPE" "SMARCA2 WILD-TYPE" "SMARCA2 WILD-TYPE" 
       TCGA-US-A77J 
  "SMARCA2 MUTATED" 
       TCGA-F2-6879        TCGA-F2-6880        TCGA-F2-7273        TCGA-F2-7276 
"SMARCA2 WILD-TYPE" "SMARCA2 WILD-TYPE" "SMARCA2 WILD-TYPE" "SMARCA2 WILD-TYPE" 
       TCGA-F2-A44G        TCGA-F2-A44H        TCGA-FB-A4P5        TCGA-FB-A4P6 
"SMARCA2 WILD-TYPE" "SMARCA2 WILD-TYPE" "SMARCA2 WILD-TYPE" "SMARCA2 WILD-TYPE" 
       TCGA-FB-A545        TCGA-FB-A5VM        TCGA-FB-A78T        TCGA-FB-A7DR 
"SMARCA2 WILD-TYPE"   "SMARCA2 MUTATED" "SMARCA2 WILD-TYPE" "SMARCA2 WILD-TYPE" 
       TCGA-FZ-5920        TCGA-FZ-5922        TCGA-FZ-5923        TCGA-H6-8124 
"SMARCA2 WILD-TYPE" "SMARCA2 WILD-TYPE" "SMARCA2 WILD-TYPE" "SMARCA2 WILD-TYPE" 
       TCGA-H6-A45N        TCGA-H8-A6C1        TCGA-HZ-7289        TCGA-HZ-7918 
"SMARCA2 WILD-TYPE" "SMARCA2 WILD-TYPE" "SMARCA2 WILD-TYPE" "SMARCA2 WILD-TYPE" 
       TCGA-HZ-7919        TCGA-HZ-7922        TCGA-HZ-7923        TCGA-HZ-7924 
"SMARCA2 WILD-TYPE" "SMARCA2 WILD-TYPE"   "SMARCA2 MUTATED" "SMARCA2 WILD-TYPE" 
       TCGA-HZ-7925        TCGA-HZ-7926        TCGA-HZ-8001        TCGA-HZ-8002 
"SMARCA2 WILD-TYPE" "SMARCA2 WILD-TYPE" "SMARCA2 WILD-TYPE" "SMARCA2 WILD-TYPE" 
       TCGA-HZ-8003        TCGA-HZ-8005        TCGA-HZ-8315        TCGA-HZ-8317 
"SMARCA2 WILD-TYPE" "SMARCA2 WILD-TYPE" "SMARCA2 WILD-TYPE"   "SMARCA2 MUTATED" 
       TCGA-HZ-8636        TCGA-HZ-8638        TCGA-HZ-A49G        TCGA-HZ-A49H 
"SMARCA2 WILD-TYPE" "SMARCA2 WILD-TYPE" "SMARCA2 WILD-TYPE" "SMARCA2 WILD-TYPE" 
       TCGA-HZ-A4BH        TCGA-HZ-A4BK        TCGA-IB-7644        TCGA-IB-7645 
"SMARCA2 WILD-TYPE" "SMARCA2 WILD-TYPE" "SMARCA2 WILD-TYPE" "SMARCA2 WILD-TYPE" 
       TCGA-IB-7646        TCGA-IB-7647        TCGA-IB-7649        TCGA-IB-7651 
"SMARCA2 WILD-TYPE" "SMARCA2 WILD-TYPE" "SMARCA2 WILD-TYPE"   "SMARCA2 MUTATED" 
       TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-7886        TCGA-IB-7887 
"SMARCA2 WILD-TYPE" "SMARCA2 WILD-TYPE" "SMARCA2 WILD-TYPE" "SMARCA2 WILD-TYPE" 
       TCGA-IB-7888        TCGA-IB-7889        TCGA-IB-7890        TCGA-IB-7891 
"SMARCA2 WILD-TYPE" "SMARCA2 WILD-TYPE" "SMARCA2 WILD-TYPE" "SMARCA2 WILD-TYPE" 
       TCGA-IB-7893        TCGA-IB-7897        TCGA-IB-8126        TCGA-IB-8127 
"SMARCA2 WILD-TYPE" "SMARCA2 WILD-TYPE" "SMARCA2 WILD-TYPE" "SMARCA2 WILD-TYPE" 
       TCGA-IB-A5SO        TCGA-IB-A5SP        TCGA-IB-A5SQ        TCGA-IB-A5SS 
"SMARCA2 WILD-TYPE" "SMARCA2 WILD-TYPE" "SMARCA2 WILD-TYPE" "SMARCA2 WILD-TYPE" 
       TCGA-IB-A5ST        TCGA-IB-A6UG        TCGA-LB-A7SX        TCGA-OE-A75W 
"SMARCA2 WILD-TYPE" "SMARCA2 WILD-TYPE" "SMARCA2 WILD-TYPE" "SMARCA2 WILD-TYPE" 
       TCGA-PZ-A5RE        TCGA-Q3-A5QY        TCGA-US-A779        TCGA-US-A77E 
  "SMARCA2 MUTATED" "SMARCA2 WILD-TYPE" "SMARCA2 WILD-TYPE" "SMARCA2 WILD-TYPE" 
       TCGA-US-A77J 
  "SMARCA2 MUTATED" 
[1] "hr=" "1.2"
D285V2, continuous
                   vv
clus                STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  SMARCA2 MUTATED          0        1         1         4         0        0
  SMARCA2 WILD-TYPE        1        3        10        47         2        3
D285V3, multiclass
                   vv
clus                T1+T2 T3+T4
  SMARCA2 MUTATED       1     5
  SMARCA2 WILD-TYPE     5    61
D285V4, multiclass
       clus
vv      SMARCA2 MUTATED SMARCA2 WILD-TYPE
  T1+T2               1                 5
  T3+T4               5                61
D285V5, binary
                   cls
clus                 0  1
  SMARCA2 MUTATED    2  4
  SMARCA2 WILD-TYPE 15 50
[1] "tbl2"
                   cls
clus                [,1] [,2]
  SMARCA2 MUTATED      2    4
  SMARCA2 WILD-TYPE   15   50
   clus
vv  SMARCA2 MUTATED SMARCA2 WILD-TYPE
  0               2                15
  1               4                50
                   vv
clus                M0 M1 MX
  SMARCA2 MUTATED    2  0  4
  SMARCA2 WILD-TYPE 37  3 26
D285V6, multiclass
    clus
vv   SMARCA2 MUTATED SMARCA2 WILD-TYPE
  M0               2                37
  M1               0                 3
  MX               4                26
D285V7, binary
                   cls
clus                 0  1
  SMARCA2 MUTATED    4  2
  SMARCA2 WILD-TYPE 32 34
[1] "tbl2"
                   cls
clus                [,1] [,2]
  SMARCA2 MUTATED      4    2
  SMARCA2 WILD-TYPE   32   34
        clus
vv       SMARCA2 MUTATED SMARCA2 WILD-TYPE
  FEMALE               4                32
  MALE                 2                34
                   vv
clus                PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  SMARCA2 MUTATED                                     6
  SMARCA2 WILD-TYPE                                  59
                   vv
clus                PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  SMARCA2 MUTATED                                       0
  SMARCA2 WILD-TYPE                                     4
                   vv
clus                PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  SMARCA2 MUTATED                                                  0
  SMARCA2 WILD-TYPE                                                2
D285V8, multiclass
                                                  clus
vv                                                 SMARCA2 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                            6
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                          0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA               0
                                                  clus
vv                                                 SMARCA2 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                             59
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                            4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                 2
D285V9, continuous
[1] "Remove cluster labels:" "SMARCA2 MUTATED"       
clus
  SMARCA2 MUTATED SMARCA2 WILD-TYPE 
                2                20 
       TCGA-F2-6880        TCGA-FB-A4P5        TCGA-FB-A4P6        TCGA-FB-A78T 
"SMARCA2 WILD-TYPE" "SMARCA2 WILD-TYPE" "SMARCA2 WILD-TYPE" "SMARCA2 WILD-TYPE" 
       TCGA-FB-A7DR        TCGA-H6-8124        TCGA-H6-A45N        TCGA-H8-A6C1 
"SMARCA2 WILD-TYPE" "SMARCA2 WILD-TYPE" "SMARCA2 WILD-TYPE" "SMARCA2 WILD-TYPE" 
       TCGA-IB-7644        TCGA-IB-7649        TCGA-IB-7885        TCGA-IB-7886 
"SMARCA2 WILD-TYPE" "SMARCA2 WILD-TYPE" "SMARCA2 WILD-TYPE" "SMARCA2 WILD-TYPE" 
       TCGA-IB-7887        TCGA-IB-7891        TCGA-IB-8126        TCGA-IB-8127 
"SMARCA2 WILD-TYPE" "SMARCA2 WILD-TYPE" "SMARCA2 WILD-TYPE" "SMARCA2 WILD-TYPE" 
       TCGA-IB-A5SS        TCGA-IB-A6UG        TCGA-LB-A7SX        TCGA-OE-A75W 
"SMARCA2 WILD-TYPE" "SMARCA2 WILD-TYPE" "SMARCA2 WILD-TYPE" "SMARCA2 WILD-TYPE" 
D285V10, continuous
[1] "Remove cluster labels:" "SMARCA2 MUTATED"       
clus
  SMARCA2 MUTATED SMARCA2 WILD-TYPE 
                2                17 
       TCGA-FB-A4P5        TCGA-FB-A4P6        TCGA-FB-A78T        TCGA-FB-A7DR 
"SMARCA2 WILD-TYPE" "SMARCA2 WILD-TYPE" "SMARCA2 WILD-TYPE" "SMARCA2 WILD-TYPE" 
       TCGA-H6-8124        TCGA-H8-A6C1        TCGA-IB-7644        TCGA-IB-7649 
"SMARCA2 WILD-TYPE" "SMARCA2 WILD-TYPE" "SMARCA2 WILD-TYPE" "SMARCA2 WILD-TYPE" 
       TCGA-IB-7885        TCGA-IB-7886        TCGA-IB-7891        TCGA-IB-8126 
"SMARCA2 WILD-TYPE" "SMARCA2 WILD-TYPE" "SMARCA2 WILD-TYPE" "SMARCA2 WILD-TYPE" 
       TCGA-IB-8127        TCGA-IB-A5SS        TCGA-IB-A6UG        TCGA-LB-A7SX 
"SMARCA2 WILD-TYPE" "SMARCA2 WILD-TYPE" "SMARCA2 WILD-TYPE" "SMARCA2 WILD-TYPE" 
       TCGA-OE-A75W 
"SMARCA2 WILD-TYPE" 
                   vv
clus                R0 R1 RX
  SMARCA2 MUTATED    4  1  0
  SMARCA2 WILD-TYPE 38 23  2
D285V11, multiclass
    clus
vv   SMARCA2 MUTATED SMARCA2 WILD-TYPE
  R0               4                38
  R1               1                23
  RX               0                 2
D285V12, continuous

Clustering(286) Variable = RHOU MUTATION ANALYSIS
D286V1, survival
                sevent
clus2             0  1
  RHOU MUTATED    1  1
  RHOU WILD-TYPE 39 28
  RHOU MUTATED RHOU WILD-TYPE 
             2             67 
  RHOU MUTATED RHOU WILD-TYPE 
             1             28 
$`RHOU MUTATED`
TCGA-F2-6879 TCGA-H6-8124 
       10.98        12.89 

$`RHOU WILD-TYPE`
TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H TCGA-FB-A4P5 
        9.70        11.84         7.10         5.03        19.27         0.13 
TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR TCGA-FZ-5920 
       11.93        12.66         2.47         0.03         5.46         2.01 
TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7289 TCGA-HZ-7918 
       36.20        20.81         7.66        13.02         7.89         0.92 
TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 
        0.66         0.13         0.26        12.13        11.87         0.26 
TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 
        0.62         0.79         0.69         3.95         0.92         0.53 
TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK 
        0.16         2.99         0.76         0.95         6.38         1.51 
TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7651 
       11.41        49.38         4.77        21.90        15.35        19.82 
TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 
       15.65        27.98         4.04         3.62        43.79        15.81 
TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-8127 
       19.66        16.04         3.85        15.98         0.56        17.16 
TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG 
       10.82         9.86         7.20        15.12         0.26         1.35 
TCGA-LB-A7SX TCGA-OE-A75W TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E 
        4.18         3.62         8.12        13.68        16.80        14.14 
TCGA-US-A77J 
       18.67 

  RHOU MUTATED RHOU WILD-TYPE 
         10.98           0.03 
  RHOU MUTATED RHOU WILD-TYPE 
         12.89          49.38 
  RHOU MUTATED RHOU WILD-TYPE 
        11.935          7.200 
[1] "11.0 - 12.9 (11.9)" "0.0 - 49.4 (7.2)"  
    TCGA-F2-6879     TCGA-F2-6880     TCGA-F2-7273     TCGA-F2-7276 
  "RHOU MUTATED" "RHOU WILD-TYPE" "RHOU WILD-TYPE" "RHOU WILD-TYPE" 
    TCGA-F2-A44G     TCGA-F2-A44H     TCGA-FB-A4P5     TCGA-FB-A4P6 
"RHOU WILD-TYPE" "RHOU WILD-TYPE" "RHOU WILD-TYPE" "RHOU WILD-TYPE" 
    TCGA-FB-A545     TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-FB-A7DR 
"RHOU WILD-TYPE" "RHOU WILD-TYPE" "RHOU WILD-TYPE" "RHOU WILD-TYPE" 
    TCGA-FZ-5920     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-H6-8124 
"RHOU WILD-TYPE" "RHOU WILD-TYPE" "RHOU WILD-TYPE"   "RHOU MUTATED" 
    TCGA-H6-A45N     TCGA-H8-A6C1     TCGA-HZ-7289     TCGA-HZ-7918 
"RHOU WILD-TYPE" "RHOU WILD-TYPE" "RHOU WILD-TYPE" "RHOU WILD-TYPE" 
    TCGA-HZ-7919     TCGA-HZ-7922     TCGA-HZ-7923     TCGA-HZ-7924 
"RHOU WILD-TYPE" "RHOU WILD-TYPE" "RHOU WILD-TYPE" "RHOU WILD-TYPE" 
    TCGA-HZ-7925     TCGA-HZ-7926     TCGA-HZ-8001     TCGA-HZ-8002 
"RHOU WILD-TYPE" "RHOU WILD-TYPE" "RHOU WILD-TYPE" "RHOU WILD-TYPE" 
    TCGA-HZ-8003     TCGA-HZ-8005     TCGA-HZ-8315     TCGA-HZ-8317 
"RHOU WILD-TYPE" "RHOU WILD-TYPE" "RHOU WILD-TYPE" "RHOU WILD-TYPE" 
    TCGA-HZ-8636     TCGA-HZ-8638     TCGA-HZ-A49G     TCGA-HZ-A49H 
"RHOU WILD-TYPE" "RHOU WILD-TYPE" "RHOU WILD-TYPE" "RHOU WILD-TYPE" 
    TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-IB-7644     TCGA-IB-7645 
"RHOU WILD-TYPE" "RHOU WILD-TYPE" "RHOU WILD-TYPE" "RHOU WILD-TYPE" 
    TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7651 
"RHOU WILD-TYPE" "RHOU WILD-TYPE" "RHOU WILD-TYPE" "RHOU WILD-TYPE" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887 
"RHOU WILD-TYPE" "RHOU WILD-TYPE" "RHOU WILD-TYPE" "RHOU WILD-TYPE" 
    TCGA-IB-7888     TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891 
"RHOU WILD-TYPE" "RHOU WILD-TYPE" "RHOU WILD-TYPE" "RHOU WILD-TYPE" 
    TCGA-IB-7893     TCGA-IB-7897     TCGA-IB-8126     TCGA-IB-8127 
"RHOU WILD-TYPE" "RHOU WILD-TYPE" "RHOU WILD-TYPE" "RHOU WILD-TYPE" 
    TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS 
"RHOU WILD-TYPE" "RHOU WILD-TYPE" "RHOU WILD-TYPE" "RHOU WILD-TYPE" 
    TCGA-IB-A5ST     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
"RHOU WILD-TYPE" "RHOU WILD-TYPE" "RHOU WILD-TYPE" "RHOU WILD-TYPE" 
    TCGA-PZ-A5RE     TCGA-Q3-A5QY     TCGA-US-A779     TCGA-US-A77E 
"RHOU WILD-TYPE" "RHOU WILD-TYPE" "RHOU WILD-TYPE" "RHOU WILD-TYPE" 
    TCGA-US-A77J 
"RHOU WILD-TYPE" 
    TCGA-F2-6879     TCGA-F2-6880     TCGA-F2-7273     TCGA-F2-7276 
  "RHOU MUTATED" "RHOU WILD-TYPE" "RHOU WILD-TYPE" "RHOU WILD-TYPE" 
    TCGA-F2-A44G     TCGA-F2-A44H     TCGA-FB-A4P5     TCGA-FB-A4P6 
"RHOU WILD-TYPE" "RHOU WILD-TYPE" "RHOU WILD-TYPE" "RHOU WILD-TYPE" 
    TCGA-FB-A545     TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-FB-A7DR 
"RHOU WILD-TYPE" "RHOU WILD-TYPE" "RHOU WILD-TYPE" "RHOU WILD-TYPE" 
    TCGA-FZ-5920     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-H6-8124 
"RHOU WILD-TYPE" "RHOU WILD-TYPE" "RHOU WILD-TYPE"   "RHOU MUTATED" 
    TCGA-H6-A45N     TCGA-H8-A6C1     TCGA-HZ-7289     TCGA-HZ-7918 
"RHOU WILD-TYPE" "RHOU WILD-TYPE" "RHOU WILD-TYPE" "RHOU WILD-TYPE" 
    TCGA-HZ-7919     TCGA-HZ-7922     TCGA-HZ-7923     TCGA-HZ-7924 
"RHOU WILD-TYPE" "RHOU WILD-TYPE" "RHOU WILD-TYPE" "RHOU WILD-TYPE" 
    TCGA-HZ-7925     TCGA-HZ-7926     TCGA-HZ-8001     TCGA-HZ-8002 
"RHOU WILD-TYPE" "RHOU WILD-TYPE" "RHOU WILD-TYPE" "RHOU WILD-TYPE" 
    TCGA-HZ-8003     TCGA-HZ-8005     TCGA-HZ-8315     TCGA-HZ-8317 
"RHOU WILD-TYPE" "RHOU WILD-TYPE" "RHOU WILD-TYPE" "RHOU WILD-TYPE" 
    TCGA-HZ-8636     TCGA-HZ-8638     TCGA-HZ-A49G     TCGA-HZ-A49H 
"RHOU WILD-TYPE" "RHOU WILD-TYPE" "RHOU WILD-TYPE" "RHOU WILD-TYPE" 
    TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-IB-7644     TCGA-IB-7645 
"RHOU WILD-TYPE" "RHOU WILD-TYPE" "RHOU WILD-TYPE" "RHOU WILD-TYPE" 
    TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7651 
"RHOU WILD-TYPE" "RHOU WILD-TYPE" "RHOU WILD-TYPE" "RHOU WILD-TYPE" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887 
"RHOU WILD-TYPE" "RHOU WILD-TYPE" "RHOU WILD-TYPE" "RHOU WILD-TYPE" 
    TCGA-IB-7888     TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891 
"RHOU WILD-TYPE" "RHOU WILD-TYPE" "RHOU WILD-TYPE" "RHOU WILD-TYPE" 
    TCGA-IB-7893     TCGA-IB-7897     TCGA-IB-8126     TCGA-IB-8127 
"RHOU WILD-TYPE" "RHOU WILD-TYPE" "RHOU WILD-TYPE" "RHOU WILD-TYPE" 
    TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS 
"RHOU WILD-TYPE" "RHOU WILD-TYPE" "RHOU WILD-TYPE" "RHOU WILD-TYPE" 
    TCGA-IB-A5ST     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
"RHOU WILD-TYPE" "RHOU WILD-TYPE" "RHOU WILD-TYPE" "RHOU WILD-TYPE" 
    TCGA-PZ-A5RE     TCGA-Q3-A5QY     TCGA-US-A779     TCGA-US-A77E 
"RHOU WILD-TYPE" "RHOU WILD-TYPE" "RHOU WILD-TYPE" "RHOU WILD-TYPE" 
    TCGA-US-A77J 
"RHOU WILD-TYPE" 
    TCGA-F2-6879     TCGA-F2-6880     TCGA-F2-7273     TCGA-F2-7276 
  "RHOU MUTATED" "RHOU WILD-TYPE" "RHOU WILD-TYPE" "RHOU WILD-TYPE" 
    TCGA-F2-A44G     TCGA-F2-A44H     TCGA-FB-A4P5     TCGA-FB-A4P6 
"RHOU WILD-TYPE" "RHOU WILD-TYPE" "RHOU WILD-TYPE" "RHOU WILD-TYPE" 
    TCGA-FB-A545     TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-FB-A7DR 
"RHOU WILD-TYPE" "RHOU WILD-TYPE" "RHOU WILD-TYPE" "RHOU WILD-TYPE" 
    TCGA-FZ-5920     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-H6-8124 
"RHOU WILD-TYPE" "RHOU WILD-TYPE" "RHOU WILD-TYPE"   "RHOU MUTATED" 
    TCGA-H6-A45N     TCGA-H8-A6C1     TCGA-HZ-7289     TCGA-HZ-7918 
"RHOU WILD-TYPE" "RHOU WILD-TYPE" "RHOU WILD-TYPE" "RHOU WILD-TYPE" 
    TCGA-HZ-7919     TCGA-HZ-7922     TCGA-HZ-7923     TCGA-HZ-7924 
"RHOU WILD-TYPE" "RHOU WILD-TYPE" "RHOU WILD-TYPE" "RHOU WILD-TYPE" 
    TCGA-HZ-7925     TCGA-HZ-7926     TCGA-HZ-8001     TCGA-HZ-8002 
"RHOU WILD-TYPE" "RHOU WILD-TYPE" "RHOU WILD-TYPE" "RHOU WILD-TYPE" 
    TCGA-HZ-8003     TCGA-HZ-8005     TCGA-HZ-8315     TCGA-HZ-8317 
"RHOU WILD-TYPE" "RHOU WILD-TYPE" "RHOU WILD-TYPE" "RHOU WILD-TYPE" 
    TCGA-HZ-8636     TCGA-HZ-8638     TCGA-HZ-A49G     TCGA-HZ-A49H 
"RHOU WILD-TYPE" "RHOU WILD-TYPE" "RHOU WILD-TYPE" "RHOU WILD-TYPE" 
    TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-IB-7644     TCGA-IB-7645 
"RHOU WILD-TYPE" "RHOU WILD-TYPE" "RHOU WILD-TYPE" "RHOU WILD-TYPE" 
    TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7651 
"RHOU WILD-TYPE" "RHOU WILD-TYPE" "RHOU WILD-TYPE" "RHOU WILD-TYPE" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887 
"RHOU WILD-TYPE" "RHOU WILD-TYPE" "RHOU WILD-TYPE" "RHOU WILD-TYPE" 
    TCGA-IB-7888     TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891 
"RHOU WILD-TYPE" "RHOU WILD-TYPE" "RHOU WILD-TYPE" "RHOU WILD-TYPE" 
    TCGA-IB-7893     TCGA-IB-7897     TCGA-IB-8126     TCGA-IB-8127 
"RHOU WILD-TYPE" "RHOU WILD-TYPE" "RHOU WILD-TYPE" "RHOU WILD-TYPE" 
    TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS 
"RHOU WILD-TYPE" "RHOU WILD-TYPE" "RHOU WILD-TYPE" "RHOU WILD-TYPE" 
    TCGA-IB-A5ST     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
"RHOU WILD-TYPE" "RHOU WILD-TYPE" "RHOU WILD-TYPE" "RHOU WILD-TYPE" 
    TCGA-PZ-A5RE     TCGA-Q3-A5QY     TCGA-US-A779     TCGA-US-A77E 
"RHOU WILD-TYPE" "RHOU WILD-TYPE" "RHOU WILD-TYPE" "RHOU WILD-TYPE" 
    TCGA-US-A77J 
"RHOU WILD-TYPE" 
[1] "Remove cluster labels:" "RHOU MUTATED"          
clus
  RHOU MUTATED RHOU WILD-TYPE 
             2             67 
    TCGA-F2-6880     TCGA-F2-7273     TCGA-F2-7276     TCGA-F2-A44G 
"RHOU WILD-TYPE" "RHOU WILD-TYPE" "RHOU WILD-TYPE" "RHOU WILD-TYPE" 
    TCGA-F2-A44H     TCGA-FB-A4P5     TCGA-FB-A4P6     TCGA-FB-A545 
"RHOU WILD-TYPE" "RHOU WILD-TYPE" "RHOU WILD-TYPE" "RHOU WILD-TYPE" 
    TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-FB-A7DR     TCGA-FZ-5920 
"RHOU WILD-TYPE" "RHOU WILD-TYPE" "RHOU WILD-TYPE" "RHOU WILD-TYPE" 
    TCGA-FZ-5922     TCGA-FZ-5923     TCGA-H6-A45N     TCGA-H8-A6C1 
"RHOU WILD-TYPE" "RHOU WILD-TYPE" "RHOU WILD-TYPE" "RHOU WILD-TYPE" 
    TCGA-HZ-7289     TCGA-HZ-7918     TCGA-HZ-7919     TCGA-HZ-7922 
"RHOU WILD-TYPE" "RHOU WILD-TYPE" "RHOU WILD-TYPE" "RHOU WILD-TYPE" 
    TCGA-HZ-7923     TCGA-HZ-7924     TCGA-HZ-7925     TCGA-HZ-7926 
"RHOU WILD-TYPE" "RHOU WILD-TYPE" "RHOU WILD-TYPE" "RHOU WILD-TYPE" 
    TCGA-HZ-8001     TCGA-HZ-8002     TCGA-HZ-8003     TCGA-HZ-8005 
"RHOU WILD-TYPE" "RHOU WILD-TYPE" "RHOU WILD-TYPE" "RHOU WILD-TYPE" 
    TCGA-HZ-8315     TCGA-HZ-8317     TCGA-HZ-8636     TCGA-HZ-8638 
"RHOU WILD-TYPE" "RHOU WILD-TYPE" "RHOU WILD-TYPE" "RHOU WILD-TYPE" 
    TCGA-HZ-A49G     TCGA-HZ-A49H     TCGA-HZ-A4BH     TCGA-HZ-A4BK 
"RHOU WILD-TYPE" "RHOU WILD-TYPE" "RHOU WILD-TYPE" "RHOU WILD-TYPE" 
    TCGA-IB-7644     TCGA-IB-7645     TCGA-IB-7646     TCGA-IB-7647 
"RHOU WILD-TYPE" "RHOU WILD-TYPE" "RHOU WILD-TYPE" "RHOU WILD-TYPE" 
    TCGA-IB-7649     TCGA-IB-7651     TCGA-IB-7652     TCGA-IB-7885 
"RHOU WILD-TYPE" "RHOU WILD-TYPE" "RHOU WILD-TYPE" "RHOU WILD-TYPE" 
    TCGA-IB-7886     TCGA-IB-7887     TCGA-IB-7888     TCGA-IB-7889 
"RHOU WILD-TYPE" "RHOU WILD-TYPE" "RHOU WILD-TYPE" "RHOU WILD-TYPE" 
    TCGA-IB-7890     TCGA-IB-7891     TCGA-IB-7893     TCGA-IB-7897 
"RHOU WILD-TYPE" "RHOU WILD-TYPE" "RHOU WILD-TYPE" "RHOU WILD-TYPE" 
    TCGA-IB-8126     TCGA-IB-8127     TCGA-IB-A5SO     TCGA-IB-A5SP 
"RHOU WILD-TYPE" "RHOU WILD-TYPE" "RHOU WILD-TYPE" "RHOU WILD-TYPE" 
    TCGA-IB-A5SQ     TCGA-IB-A5SS     TCGA-IB-A5ST     TCGA-IB-A6UG 
"RHOU WILD-TYPE" "RHOU WILD-TYPE" "RHOU WILD-TYPE" "RHOU WILD-TYPE" 
    TCGA-LB-A7SX     TCGA-OE-A75W     TCGA-PZ-A5RE     TCGA-Q3-A5QY 
"RHOU WILD-TYPE" "RHOU WILD-TYPE" "RHOU WILD-TYPE" "RHOU WILD-TYPE" 
    TCGA-US-A779     TCGA-US-A77E     TCGA-US-A77J 
"RHOU WILD-TYPE" "RHOU WILD-TYPE" "RHOU WILD-TYPE" 
D286V2, continuous
                vv
clus             STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  RHOU MUTATED          0        0         0         3         0        0
  RHOU WILD-TYPE        1        4        11        48         2        3
D286V3, multiclass
                vv
clus             T1+T2 T3+T4
  RHOU MUTATED       0     3
  RHOU WILD-TYPE     6    63
D286V4, multiclass
       clus
vv      RHOU MUTATED RHOU WILD-TYPE
  T1+T2            0              6
  T3+T4            3             63
D286V5, binary
                cls
clus              0  1
  RHOU MUTATED    0  3
  RHOU WILD-TYPE 17 51
[1] "tbl2"
                cls
clus             [,1] [,2]
  RHOU MUTATED      0    3
  RHOU WILD-TYPE   17   51
   clus
vv  RHOU MUTATED RHOU WILD-TYPE
  0            0             17
  1            3             51
                vv
clus             M0 M1 MX
  RHOU MUTATED    2  0  1
  RHOU WILD-TYPE 37  3 29
D286V6, multiclass
    clus
vv   RHOU MUTATED RHOU WILD-TYPE
  M0            2             37
  M1            0              3
  MX            1             29
D286V7, binary
                cls
clus              0  1
  RHOU MUTATED    1  2
  RHOU WILD-TYPE 35 34
[1] "tbl2"
                cls
clus             [,1] [,2]
  RHOU MUTATED      1    2
  RHOU WILD-TYPE   35   34
        clus
vv       RHOU MUTATED RHOU WILD-TYPE
  FEMALE            1             35
  MALE              2             34
                vv
clus             PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  RHOU MUTATED                                     2
  RHOU WILD-TYPE                                  63
                vv
clus             PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  RHOU MUTATED                                       0
  RHOU WILD-TYPE                                     4
                vv
clus             PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  RHOU MUTATED                                                  0
  RHOU WILD-TYPE                                                2
D286V8, multiclass
[1] "Remove cluster labels:" "RHOU MUTATED"          
clus
  RHOU MUTATED RHOU WILD-TYPE 
             2             69 
    TCGA-F2-6880     TCGA-F2-7273     TCGA-F2-7276     TCGA-F2-A44G 
"RHOU WILD-TYPE" "RHOU WILD-TYPE" "RHOU WILD-TYPE" "RHOU WILD-TYPE" 
    TCGA-F2-A44H     TCGA-FB-A4P5     TCGA-FB-A4P6     TCGA-FB-A545 
"RHOU WILD-TYPE" "RHOU WILD-TYPE" "RHOU WILD-TYPE" "RHOU WILD-TYPE" 
    TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-FB-A7DR     TCGA-FZ-5920 
"RHOU WILD-TYPE" "RHOU WILD-TYPE" "RHOU WILD-TYPE" "RHOU WILD-TYPE" 
    TCGA-FZ-5922     TCGA-FZ-5923     TCGA-H6-A45N     TCGA-H8-A6C1 
"RHOU WILD-TYPE" "RHOU WILD-TYPE" "RHOU WILD-TYPE" "RHOU WILD-TYPE" 
    TCGA-HZ-7289     TCGA-HZ-7918     TCGA-HZ-7919     TCGA-HZ-7920 
"RHOU WILD-TYPE" "RHOU WILD-TYPE" "RHOU WILD-TYPE" "RHOU WILD-TYPE" 
    TCGA-HZ-7922     TCGA-HZ-7923     TCGA-HZ-7924     TCGA-HZ-7925 
"RHOU WILD-TYPE" "RHOU WILD-TYPE" "RHOU WILD-TYPE" "RHOU WILD-TYPE" 
    TCGA-HZ-7926     TCGA-HZ-8001     TCGA-HZ-8002     TCGA-HZ-8003 
"RHOU WILD-TYPE" "RHOU WILD-TYPE" "RHOU WILD-TYPE" "RHOU WILD-TYPE" 
    TCGA-HZ-8005     TCGA-HZ-8315     TCGA-HZ-8317     TCGA-HZ-8636 
"RHOU WILD-TYPE" "RHOU WILD-TYPE" "RHOU WILD-TYPE" "RHOU WILD-TYPE" 
    TCGA-HZ-8637     TCGA-HZ-8638     TCGA-HZ-A49G     TCGA-HZ-A49H 
"RHOU WILD-TYPE" "RHOU WILD-TYPE" "RHOU WILD-TYPE" "RHOU WILD-TYPE" 
    TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-IB-7644     TCGA-IB-7645 
"RHOU WILD-TYPE" "RHOU WILD-TYPE" "RHOU WILD-TYPE" "RHOU WILD-TYPE" 
    TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7651 
"RHOU WILD-TYPE" "RHOU WILD-TYPE" "RHOU WILD-TYPE" "RHOU WILD-TYPE" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887 
"RHOU WILD-TYPE" "RHOU WILD-TYPE" "RHOU WILD-TYPE" "RHOU WILD-TYPE" 
    TCGA-IB-7888     TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891 
"RHOU WILD-TYPE" "RHOU WILD-TYPE" "RHOU WILD-TYPE" "RHOU WILD-TYPE" 
    TCGA-IB-7893     TCGA-IB-7897     TCGA-IB-8126     TCGA-IB-8127 
"RHOU WILD-TYPE" "RHOU WILD-TYPE" "RHOU WILD-TYPE" "RHOU WILD-TYPE" 
    TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS 
"RHOU WILD-TYPE" "RHOU WILD-TYPE" "RHOU WILD-TYPE" "RHOU WILD-TYPE" 
    TCGA-IB-A5ST     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
"RHOU WILD-TYPE" "RHOU WILD-TYPE" "RHOU WILD-TYPE" "RHOU WILD-TYPE" 
    TCGA-PZ-A5RE     TCGA-Q3-A5QY     TCGA-US-A779     TCGA-US-A77E 
"RHOU WILD-TYPE" "RHOU WILD-TYPE" "RHOU WILD-TYPE" "RHOU WILD-TYPE" 
    TCGA-US-A77J 
"RHOU WILD-TYPE" 
D286V9, continuous
[1] "Remove cluster labels:" "RHOU MUTATED"          
clus
  RHOU MUTATED RHOU WILD-TYPE 
             1             21 
    TCGA-F2-6880     TCGA-FB-A4P5     TCGA-FB-A4P6     TCGA-FB-A5VM 
"RHOU WILD-TYPE" "RHOU WILD-TYPE" "RHOU WILD-TYPE" "RHOU WILD-TYPE" 
    TCGA-FB-A78T     TCGA-FB-A7DR     TCGA-H6-A45N     TCGA-H8-A6C1 
"RHOU WILD-TYPE" "RHOU WILD-TYPE" "RHOU WILD-TYPE" "RHOU WILD-TYPE" 
    TCGA-IB-7644     TCGA-IB-7649     TCGA-IB-7651     TCGA-IB-7885 
"RHOU WILD-TYPE" "RHOU WILD-TYPE" "RHOU WILD-TYPE" "RHOU WILD-TYPE" 
    TCGA-IB-7886     TCGA-IB-7887     TCGA-IB-7891     TCGA-IB-8126 
"RHOU WILD-TYPE" "RHOU WILD-TYPE" "RHOU WILD-TYPE" "RHOU WILD-TYPE" 
    TCGA-IB-8127     TCGA-IB-A5SS     TCGA-IB-A6UG     TCGA-LB-A7SX 
"RHOU WILD-TYPE" "RHOU WILD-TYPE" "RHOU WILD-TYPE" "RHOU WILD-TYPE" 
    TCGA-OE-A75W 
"RHOU WILD-TYPE" 
D286V10, continuous
[1] "Remove cluster labels:" "RHOU MUTATED"          
clus
  RHOU MUTATED RHOU WILD-TYPE 
             1             18 
    TCGA-FB-A4P5     TCGA-FB-A4P6     TCGA-FB-A5VM     TCGA-FB-A78T 
"RHOU WILD-TYPE" "RHOU WILD-TYPE" "RHOU WILD-TYPE" "RHOU WILD-TYPE" 
    TCGA-FB-A7DR     TCGA-H8-A6C1     TCGA-IB-7644     TCGA-IB-7649 
"RHOU WILD-TYPE" "RHOU WILD-TYPE" "RHOU WILD-TYPE" "RHOU WILD-TYPE" 
    TCGA-IB-7651     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7891 
"RHOU WILD-TYPE" "RHOU WILD-TYPE" "RHOU WILD-TYPE" "RHOU WILD-TYPE" 
    TCGA-IB-8126     TCGA-IB-8127     TCGA-IB-A5SS     TCGA-IB-A6UG 
"RHOU WILD-TYPE" "RHOU WILD-TYPE" "RHOU WILD-TYPE" "RHOU WILD-TYPE" 
    TCGA-LB-A7SX     TCGA-OE-A75W 
"RHOU WILD-TYPE" "RHOU WILD-TYPE" 
                vv
clus             R0 R1 RX
  RHOU MUTATED    2  1  0
  RHOU WILD-TYPE 40 23  2
D286V11, multiclass
    clus
vv   RHOU MUTATED RHOU WILD-TYPE
  R0            2             40
  R1            1             23
  RX            0              2
D286V12, continuous

Clustering(287) Variable = NOLC1 MUTATION ANALYSIS
D287V1, survival
                 sevent
clus2              0  1
  NOLC1 MUTATED    0  3
  NOLC1 WILD-TYPE 40 26
  NOLC1 MUTATED NOLC1 WILD-TYPE 
              3              66 
  NOLC1 MUTATED NOLC1 WILD-TYPE 
              3              26 
$`NOLC1 MUTATED`
TCGA-IB-7649 TCGA-IB-7890 TCGA-IB-7897 
       15.35        19.66        15.98 

$`NOLC1 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P5 TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR 
        0.13        11.93        12.66         2.47         0.03         5.46 
TCGA-FZ-5920 TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 
        2.01        36.20        20.81        12.89         7.66        13.02 
TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 
        7.89         0.92         0.66         0.13         0.26        12.13 
TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 
       11.87         0.26         0.62         0.79         0.69         3.95 
TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H 
        0.92         0.53         0.16         2.99         0.76         0.95 
TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 
        6.38         1.51        11.41        49.38         4.77        21.90 
TCGA-IB-7651 TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7888 
       19.82        15.65        27.98         4.04         3.62        43.79 
TCGA-IB-7889 TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO 
       15.81        16.04         3.85         0.56        17.16        10.82 
TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX 
        9.86         7.20        15.12         0.26         1.35         4.18 
TCGA-OE-A75W TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
        3.62         8.12        13.68        16.80        14.14        18.67 

  NOLC1 MUTATED NOLC1 WILD-TYPE 
          15.35            0.03 
  NOLC1 MUTATED NOLC1 WILD-TYPE 
          19.66           49.38 
  NOLC1 MUTATED NOLC1 WILD-TYPE 
          15.98            7.15 
[1] "15.3 - 19.7 (16.0)" "0.0 - 49.4 (7.2)"  
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"NOLC1 WILD-TYPE" "NOLC1 WILD-TYPE" "NOLC1 WILD-TYPE" "NOLC1 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"NOLC1 WILD-TYPE" "NOLC1 WILD-TYPE" "NOLC1 WILD-TYPE" "NOLC1 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"NOLC1 WILD-TYPE" "NOLC1 WILD-TYPE" "NOLC1 WILD-TYPE" "NOLC1 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"NOLC1 WILD-TYPE" "NOLC1 WILD-TYPE" "NOLC1 WILD-TYPE" "NOLC1 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"NOLC1 WILD-TYPE" "NOLC1 WILD-TYPE" "NOLC1 WILD-TYPE" "NOLC1 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"NOLC1 WILD-TYPE" "NOLC1 WILD-TYPE" "NOLC1 WILD-TYPE" "NOLC1 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"NOLC1 WILD-TYPE" "NOLC1 WILD-TYPE" "NOLC1 WILD-TYPE" "NOLC1 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"NOLC1 WILD-TYPE" "NOLC1 WILD-TYPE" "NOLC1 WILD-TYPE" "NOLC1 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"NOLC1 WILD-TYPE" "NOLC1 WILD-TYPE" "NOLC1 WILD-TYPE" "NOLC1 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"NOLC1 WILD-TYPE" "NOLC1 WILD-TYPE" "NOLC1 WILD-TYPE" "NOLC1 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"NOLC1 WILD-TYPE" "NOLC1 WILD-TYPE"   "NOLC1 MUTATED" "NOLC1 WILD-TYPE" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"NOLC1 WILD-TYPE" "NOLC1 WILD-TYPE" "NOLC1 WILD-TYPE" "NOLC1 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"NOLC1 WILD-TYPE" "NOLC1 WILD-TYPE"   "NOLC1 MUTATED" "NOLC1 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"NOLC1 WILD-TYPE"   "NOLC1 MUTATED" "NOLC1 WILD-TYPE" "NOLC1 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"NOLC1 WILD-TYPE" "NOLC1 WILD-TYPE" "NOLC1 WILD-TYPE" "NOLC1 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"NOLC1 WILD-TYPE" "NOLC1 WILD-TYPE" "NOLC1 WILD-TYPE" "NOLC1 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"NOLC1 WILD-TYPE" "NOLC1 WILD-TYPE" "NOLC1 WILD-TYPE" "NOLC1 WILD-TYPE" 
     TCGA-US-A77J 
"NOLC1 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"NOLC1 WILD-TYPE" "NOLC1 WILD-TYPE" "NOLC1 WILD-TYPE" "NOLC1 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"NOLC1 WILD-TYPE" "NOLC1 WILD-TYPE" "NOLC1 WILD-TYPE" "NOLC1 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"NOLC1 WILD-TYPE" "NOLC1 WILD-TYPE" "NOLC1 WILD-TYPE" "NOLC1 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"NOLC1 WILD-TYPE" "NOLC1 WILD-TYPE" "NOLC1 WILD-TYPE" "NOLC1 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"NOLC1 WILD-TYPE" "NOLC1 WILD-TYPE" "NOLC1 WILD-TYPE" "NOLC1 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"NOLC1 WILD-TYPE" "NOLC1 WILD-TYPE" "NOLC1 WILD-TYPE" "NOLC1 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"NOLC1 WILD-TYPE" "NOLC1 WILD-TYPE" "NOLC1 WILD-TYPE" "NOLC1 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"NOLC1 WILD-TYPE" "NOLC1 WILD-TYPE" "NOLC1 WILD-TYPE" "NOLC1 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"NOLC1 WILD-TYPE" "NOLC1 WILD-TYPE" "NOLC1 WILD-TYPE" "NOLC1 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"NOLC1 WILD-TYPE" "NOLC1 WILD-TYPE" "NOLC1 WILD-TYPE" "NOLC1 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"NOLC1 WILD-TYPE" "NOLC1 WILD-TYPE"   "NOLC1 MUTATED" "NOLC1 WILD-TYPE" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"NOLC1 WILD-TYPE" "NOLC1 WILD-TYPE" "NOLC1 WILD-TYPE" "NOLC1 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"NOLC1 WILD-TYPE" "NOLC1 WILD-TYPE"   "NOLC1 MUTATED" "NOLC1 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"NOLC1 WILD-TYPE"   "NOLC1 MUTATED" "NOLC1 WILD-TYPE" "NOLC1 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"NOLC1 WILD-TYPE" "NOLC1 WILD-TYPE" "NOLC1 WILD-TYPE" "NOLC1 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"NOLC1 WILD-TYPE" "NOLC1 WILD-TYPE" "NOLC1 WILD-TYPE" "NOLC1 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"NOLC1 WILD-TYPE" "NOLC1 WILD-TYPE" "NOLC1 WILD-TYPE" "NOLC1 WILD-TYPE" 
     TCGA-US-A77J 
"NOLC1 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"NOLC1 WILD-TYPE" "NOLC1 WILD-TYPE" "NOLC1 WILD-TYPE" "NOLC1 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"NOLC1 WILD-TYPE" "NOLC1 WILD-TYPE" "NOLC1 WILD-TYPE" "NOLC1 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"NOLC1 WILD-TYPE" "NOLC1 WILD-TYPE" "NOLC1 WILD-TYPE" "NOLC1 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"NOLC1 WILD-TYPE" "NOLC1 WILD-TYPE" "NOLC1 WILD-TYPE" "NOLC1 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"NOLC1 WILD-TYPE" "NOLC1 WILD-TYPE" "NOLC1 WILD-TYPE" "NOLC1 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"NOLC1 WILD-TYPE" "NOLC1 WILD-TYPE" "NOLC1 WILD-TYPE" "NOLC1 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"NOLC1 WILD-TYPE" "NOLC1 WILD-TYPE" "NOLC1 WILD-TYPE" "NOLC1 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"NOLC1 WILD-TYPE" "NOLC1 WILD-TYPE" "NOLC1 WILD-TYPE" "NOLC1 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"NOLC1 WILD-TYPE" "NOLC1 WILD-TYPE" "NOLC1 WILD-TYPE" "NOLC1 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"NOLC1 WILD-TYPE" "NOLC1 WILD-TYPE" "NOLC1 WILD-TYPE" "NOLC1 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"NOLC1 WILD-TYPE" "NOLC1 WILD-TYPE"   "NOLC1 MUTATED" "NOLC1 WILD-TYPE" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"NOLC1 WILD-TYPE" "NOLC1 WILD-TYPE" "NOLC1 WILD-TYPE" "NOLC1 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"NOLC1 WILD-TYPE" "NOLC1 WILD-TYPE"   "NOLC1 MUTATED" "NOLC1 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"NOLC1 WILD-TYPE"   "NOLC1 MUTATED" "NOLC1 WILD-TYPE" "NOLC1 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"NOLC1 WILD-TYPE" "NOLC1 WILD-TYPE" "NOLC1 WILD-TYPE" "NOLC1 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"NOLC1 WILD-TYPE" "NOLC1 WILD-TYPE" "NOLC1 WILD-TYPE" "NOLC1 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"NOLC1 WILD-TYPE" "NOLC1 WILD-TYPE" "NOLC1 WILD-TYPE" "NOLC1 WILD-TYPE" 
     TCGA-US-A77J 
"NOLC1 WILD-TYPE" 
[1] "hr=" "1.4"
D287V2, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  NOLC1 MUTATED          0        1         0         2         0        0
  NOLC1 WILD-TYPE        1        3        11        49         2        3
D287V3, multiclass
                 vv
clus              T1+T2 T3+T4
  NOLC1 MUTATED       1     2
  NOLC1 WILD-TYPE     5    64
D287V4, multiclass
       clus
vv      NOLC1 MUTATED NOLC1 WILD-TYPE
  T1+T2             1               5
  T3+T4             2              64
D287V5, binary
                 cls
clus               0  1
  NOLC1 MUTATED    1  2
  NOLC1 WILD-TYPE 16 52
[1] "tbl2"
                 cls
clus              [,1] [,2]
  NOLC1 MUTATED      1    2
  NOLC1 WILD-TYPE   16   52
   clus
vv  NOLC1 MUTATED NOLC1 WILD-TYPE
  0             1              16
  1             2              52
                 vv
clus              M0 M1 MX
  NOLC1 MUTATED    3  0  0
  NOLC1 WILD-TYPE 36  3 30
D287V6, multiclass
    clus
vv   NOLC1 MUTATED NOLC1 WILD-TYPE
  M0             3              36
  M1             0               3
  MX             0              30
D287V7, binary
                 cls
clus               0  1
  NOLC1 MUTATED    2  1
  NOLC1 WILD-TYPE 34 35
[1] "tbl2"
                 cls
clus              [,1] [,2]
  NOLC1 MUTATED      2    1
  NOLC1 WILD-TYPE   34   35
        clus
vv       NOLC1 MUTATED NOLC1 WILD-TYPE
  FEMALE             2              34
  MALE               1              35
                 vv
clus              PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  NOLC1 MUTATED                                     3
  NOLC1 WILD-TYPE                                  62
                 vv
clus              PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  NOLC1 MUTATED                                       0
  NOLC1 WILD-TYPE                                     4
                 vv
clus              PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  NOLC1 MUTATED                                                  0
  NOLC1 WILD-TYPE                                                2
D287V8, multiclass
                                                  clus
vv                                                 NOLC1 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                          3
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                        0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA             0
                                                  clus
vv                                                 NOLC1 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                           62
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                          4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA               2
D287V9, continuous
[1] "Remove cluster labels:" "NOLC1 MUTATED"         
clus
  NOLC1 MUTATED NOLC1 WILD-TYPE 
              1              21 
     TCGA-F2-6880      TCGA-FB-A4P5      TCGA-FB-A4P6      TCGA-FB-A5VM 
"NOLC1 WILD-TYPE" "NOLC1 WILD-TYPE" "NOLC1 WILD-TYPE" "NOLC1 WILD-TYPE" 
     TCGA-FB-A78T      TCGA-FB-A7DR      TCGA-H6-8124      TCGA-H6-A45N 
"NOLC1 WILD-TYPE" "NOLC1 WILD-TYPE" "NOLC1 WILD-TYPE" "NOLC1 WILD-TYPE" 
     TCGA-H8-A6C1      TCGA-IB-7644      TCGA-IB-7651      TCGA-IB-7885 
"NOLC1 WILD-TYPE" "NOLC1 WILD-TYPE" "NOLC1 WILD-TYPE" "NOLC1 WILD-TYPE" 
     TCGA-IB-7886      TCGA-IB-7887      TCGA-IB-7891      TCGA-IB-8126 
"NOLC1 WILD-TYPE" "NOLC1 WILD-TYPE" "NOLC1 WILD-TYPE" "NOLC1 WILD-TYPE" 
     TCGA-IB-8127      TCGA-IB-A5SS      TCGA-IB-A6UG      TCGA-LB-A7SX 
"NOLC1 WILD-TYPE" "NOLC1 WILD-TYPE" "NOLC1 WILD-TYPE" "NOLC1 WILD-TYPE" 
     TCGA-OE-A75W 
"NOLC1 WILD-TYPE" 
D287V10, continuous
[1] "Remove cluster labels:" "NOLC1 MUTATED"         
clus
  NOLC1 MUTATED NOLC1 WILD-TYPE 
              1              18 
     TCGA-FB-A4P5      TCGA-FB-A4P6      TCGA-FB-A5VM      TCGA-FB-A78T 
"NOLC1 WILD-TYPE" "NOLC1 WILD-TYPE" "NOLC1 WILD-TYPE" "NOLC1 WILD-TYPE" 
     TCGA-FB-A7DR      TCGA-H6-8124      TCGA-H8-A6C1      TCGA-IB-7644 
"NOLC1 WILD-TYPE" "NOLC1 WILD-TYPE" "NOLC1 WILD-TYPE" "NOLC1 WILD-TYPE" 
     TCGA-IB-7651      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7891 
"NOLC1 WILD-TYPE" "NOLC1 WILD-TYPE" "NOLC1 WILD-TYPE" "NOLC1 WILD-TYPE" 
     TCGA-IB-8126      TCGA-IB-8127      TCGA-IB-A5SS      TCGA-IB-A6UG 
"NOLC1 WILD-TYPE" "NOLC1 WILD-TYPE" "NOLC1 WILD-TYPE" "NOLC1 WILD-TYPE" 
     TCGA-LB-A7SX      TCGA-OE-A75W 
"NOLC1 WILD-TYPE" "NOLC1 WILD-TYPE" 
                 vv
clus              R0 R1 RX
  NOLC1 MUTATED    2  1  0
  NOLC1 WILD-TYPE 40 23  2
D287V11, multiclass
    clus
vv   NOLC1 MUTATED NOLC1 WILD-TYPE
  R0             2              40
  R1             1              23
  RX             0               2
D287V12, continuous

Clustering(288) Variable = CDK5 MUTATION ANALYSIS
D288V1, survival
                sevent
clus2             0  1
  CDK5 MUTATED    3  0
  CDK5 WILD-TYPE 37 29
  CDK5 MUTATED CDK5 WILD-TYPE 
             3             66 
  CDK5 MUTATED CDK5 WILD-TYPE 
             0             29 
$`CDK5 MUTATED`
TCGA-F2-A44H TCGA-IB-7891 TCGA-IB-8127 
       19.27        16.04        17.16 

$`CDK5 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-FB-A4P5 
       10.98         9.70        11.84         7.10         5.03         0.13 
TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR TCGA-FZ-5920 
       11.93        12.66         2.47         0.03         5.46         2.01 
TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7289 
       36.20        20.81        12.89         7.66        13.02         7.89 
TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 
        0.92         0.66         0.13         0.26        12.13        11.87 
TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 
        0.26         0.62         0.79         0.69         3.95         0.92 
TCGA-HZ-8317 TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH 
        0.53         0.16         2.99         0.76         0.95         6.38 
TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 
        1.51        11.41        49.38         4.77        21.90        15.35 
TCGA-IB-7651 TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7888 
       19.82        15.65        27.98         4.04         3.62        43.79 
TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-A5SO 
       15.81        19.66         3.85        15.98         0.56        10.82 
TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX 
        9.86         7.20        15.12         0.26         1.35         4.18 
TCGA-OE-A75W TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
        3.62         8.12        13.68        16.80        14.14        18.67 

  CDK5 MUTATED CDK5 WILD-TYPE 
         16.04           0.03 
  CDK5 MUTATED CDK5 WILD-TYPE 
         19.27          49.38 
  CDK5 MUTATED CDK5 WILD-TYPE 
         17.16           7.15 
[1] "16.0 - 19.3 (17.2)" "0.0 - 49.4 (7.2)"  
    TCGA-F2-6879     TCGA-F2-6880     TCGA-F2-7273     TCGA-F2-7276 
"CDK5 WILD-TYPE" "CDK5 WILD-TYPE" "CDK5 WILD-TYPE" "CDK5 WILD-TYPE" 
    TCGA-F2-A44G     TCGA-F2-A44H     TCGA-FB-A4P5     TCGA-FB-A4P6 
"CDK5 WILD-TYPE"   "CDK5 MUTATED" "CDK5 WILD-TYPE" "CDK5 WILD-TYPE" 
    TCGA-FB-A545     TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-FB-A7DR 
"CDK5 WILD-TYPE" "CDK5 WILD-TYPE" "CDK5 WILD-TYPE" "CDK5 WILD-TYPE" 
    TCGA-FZ-5920     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-H6-8124 
"CDK5 WILD-TYPE" "CDK5 WILD-TYPE" "CDK5 WILD-TYPE" "CDK5 WILD-TYPE" 
    TCGA-H6-A45N     TCGA-H8-A6C1     TCGA-HZ-7289     TCGA-HZ-7918 
"CDK5 WILD-TYPE" "CDK5 WILD-TYPE" "CDK5 WILD-TYPE" "CDK5 WILD-TYPE" 
    TCGA-HZ-7919     TCGA-HZ-7922     TCGA-HZ-7923     TCGA-HZ-7924 
"CDK5 WILD-TYPE" "CDK5 WILD-TYPE" "CDK5 WILD-TYPE" "CDK5 WILD-TYPE" 
    TCGA-HZ-7925     TCGA-HZ-7926     TCGA-HZ-8001     TCGA-HZ-8002 
"CDK5 WILD-TYPE" "CDK5 WILD-TYPE" "CDK5 WILD-TYPE" "CDK5 WILD-TYPE" 
    TCGA-HZ-8003     TCGA-HZ-8005     TCGA-HZ-8315     TCGA-HZ-8317 
"CDK5 WILD-TYPE" "CDK5 WILD-TYPE" "CDK5 WILD-TYPE" "CDK5 WILD-TYPE" 
    TCGA-HZ-8636     TCGA-HZ-8638     TCGA-HZ-A49G     TCGA-HZ-A49H 
"CDK5 WILD-TYPE" "CDK5 WILD-TYPE" "CDK5 WILD-TYPE" "CDK5 WILD-TYPE" 
    TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-IB-7644     TCGA-IB-7645 
"CDK5 WILD-TYPE" "CDK5 WILD-TYPE" "CDK5 WILD-TYPE" "CDK5 WILD-TYPE" 
    TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7651 
"CDK5 WILD-TYPE" "CDK5 WILD-TYPE" "CDK5 WILD-TYPE" "CDK5 WILD-TYPE" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887 
"CDK5 WILD-TYPE" "CDK5 WILD-TYPE" "CDK5 WILD-TYPE" "CDK5 WILD-TYPE" 
    TCGA-IB-7888     TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891 
"CDK5 WILD-TYPE" "CDK5 WILD-TYPE" "CDK5 WILD-TYPE"   "CDK5 MUTATED" 
    TCGA-IB-7893     TCGA-IB-7897     TCGA-IB-8126     TCGA-IB-8127 
"CDK5 WILD-TYPE" "CDK5 WILD-TYPE" "CDK5 WILD-TYPE"   "CDK5 MUTATED" 
    TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS 
"CDK5 WILD-TYPE" "CDK5 WILD-TYPE" "CDK5 WILD-TYPE" "CDK5 WILD-TYPE" 
    TCGA-IB-A5ST     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
"CDK5 WILD-TYPE" "CDK5 WILD-TYPE" "CDK5 WILD-TYPE" "CDK5 WILD-TYPE" 
    TCGA-PZ-A5RE     TCGA-Q3-A5QY     TCGA-US-A779     TCGA-US-A77E 
"CDK5 WILD-TYPE" "CDK5 WILD-TYPE" "CDK5 WILD-TYPE" "CDK5 WILD-TYPE" 
    TCGA-US-A77J 
"CDK5 WILD-TYPE" 
    TCGA-F2-6879     TCGA-F2-6880     TCGA-F2-7273     TCGA-F2-7276 
"CDK5 WILD-TYPE" "CDK5 WILD-TYPE" "CDK5 WILD-TYPE" "CDK5 WILD-TYPE" 
    TCGA-F2-A44G     TCGA-F2-A44H     TCGA-FB-A4P5     TCGA-FB-A4P6 
"CDK5 WILD-TYPE"   "CDK5 MUTATED" "CDK5 WILD-TYPE" "CDK5 WILD-TYPE" 
    TCGA-FB-A545     TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-FB-A7DR 
"CDK5 WILD-TYPE" "CDK5 WILD-TYPE" "CDK5 WILD-TYPE" "CDK5 WILD-TYPE" 
    TCGA-FZ-5920     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-H6-8124 
"CDK5 WILD-TYPE" "CDK5 WILD-TYPE" "CDK5 WILD-TYPE" "CDK5 WILD-TYPE" 
    TCGA-H6-A45N     TCGA-H8-A6C1     TCGA-HZ-7289     TCGA-HZ-7918 
"CDK5 WILD-TYPE" "CDK5 WILD-TYPE" "CDK5 WILD-TYPE" "CDK5 WILD-TYPE" 
    TCGA-HZ-7919     TCGA-HZ-7922     TCGA-HZ-7923     TCGA-HZ-7924 
"CDK5 WILD-TYPE" "CDK5 WILD-TYPE" "CDK5 WILD-TYPE" "CDK5 WILD-TYPE" 
    TCGA-HZ-7925     TCGA-HZ-7926     TCGA-HZ-8001     TCGA-HZ-8002 
"CDK5 WILD-TYPE" "CDK5 WILD-TYPE" "CDK5 WILD-TYPE" "CDK5 WILD-TYPE" 
    TCGA-HZ-8003     TCGA-HZ-8005     TCGA-HZ-8315     TCGA-HZ-8317 
"CDK5 WILD-TYPE" "CDK5 WILD-TYPE" "CDK5 WILD-TYPE" "CDK5 WILD-TYPE" 
    TCGA-HZ-8636     TCGA-HZ-8638     TCGA-HZ-A49G     TCGA-HZ-A49H 
"CDK5 WILD-TYPE" "CDK5 WILD-TYPE" "CDK5 WILD-TYPE" "CDK5 WILD-TYPE" 
    TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-IB-7644     TCGA-IB-7645 
"CDK5 WILD-TYPE" "CDK5 WILD-TYPE" "CDK5 WILD-TYPE" "CDK5 WILD-TYPE" 
    TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7651 
"CDK5 WILD-TYPE" "CDK5 WILD-TYPE" "CDK5 WILD-TYPE" "CDK5 WILD-TYPE" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887 
"CDK5 WILD-TYPE" "CDK5 WILD-TYPE" "CDK5 WILD-TYPE" "CDK5 WILD-TYPE" 
    TCGA-IB-7888     TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891 
"CDK5 WILD-TYPE" "CDK5 WILD-TYPE" "CDK5 WILD-TYPE"   "CDK5 MUTATED" 
    TCGA-IB-7893     TCGA-IB-7897     TCGA-IB-8126     TCGA-IB-8127 
"CDK5 WILD-TYPE" "CDK5 WILD-TYPE" "CDK5 WILD-TYPE"   "CDK5 MUTATED" 
    TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS 
"CDK5 WILD-TYPE" "CDK5 WILD-TYPE" "CDK5 WILD-TYPE" "CDK5 WILD-TYPE" 
    TCGA-IB-A5ST     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
"CDK5 WILD-TYPE" "CDK5 WILD-TYPE" "CDK5 WILD-TYPE" "CDK5 WILD-TYPE" 
    TCGA-PZ-A5RE     TCGA-Q3-A5QY     TCGA-US-A779     TCGA-US-A77E 
"CDK5 WILD-TYPE" "CDK5 WILD-TYPE" "CDK5 WILD-TYPE" "CDK5 WILD-TYPE" 
    TCGA-US-A77J 
"CDK5 WILD-TYPE" 
    TCGA-F2-6879     TCGA-F2-6880     TCGA-F2-7273     TCGA-F2-7276 
"CDK5 WILD-TYPE" "CDK5 WILD-TYPE" "CDK5 WILD-TYPE" "CDK5 WILD-TYPE" 
    TCGA-F2-A44G     TCGA-F2-A44H     TCGA-FB-A4P5     TCGA-FB-A4P6 
"CDK5 WILD-TYPE"   "CDK5 MUTATED" "CDK5 WILD-TYPE" "CDK5 WILD-TYPE" 
    TCGA-FB-A545     TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-FB-A7DR 
"CDK5 WILD-TYPE" "CDK5 WILD-TYPE" "CDK5 WILD-TYPE" "CDK5 WILD-TYPE" 
    TCGA-FZ-5920     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-H6-8124 
"CDK5 WILD-TYPE" "CDK5 WILD-TYPE" "CDK5 WILD-TYPE" "CDK5 WILD-TYPE" 
    TCGA-H6-A45N     TCGA-H8-A6C1     TCGA-HZ-7289     TCGA-HZ-7918 
"CDK5 WILD-TYPE" "CDK5 WILD-TYPE" "CDK5 WILD-TYPE" "CDK5 WILD-TYPE" 
    TCGA-HZ-7919     TCGA-HZ-7922     TCGA-HZ-7923     TCGA-HZ-7924 
"CDK5 WILD-TYPE" "CDK5 WILD-TYPE" "CDK5 WILD-TYPE" "CDK5 WILD-TYPE" 
    TCGA-HZ-7925     TCGA-HZ-7926     TCGA-HZ-8001     TCGA-HZ-8002 
"CDK5 WILD-TYPE" "CDK5 WILD-TYPE" "CDK5 WILD-TYPE" "CDK5 WILD-TYPE" 
    TCGA-HZ-8003     TCGA-HZ-8005     TCGA-HZ-8315     TCGA-HZ-8317 
"CDK5 WILD-TYPE" "CDK5 WILD-TYPE" "CDK5 WILD-TYPE" "CDK5 WILD-TYPE" 
    TCGA-HZ-8636     TCGA-HZ-8638     TCGA-HZ-A49G     TCGA-HZ-A49H 
"CDK5 WILD-TYPE" "CDK5 WILD-TYPE" "CDK5 WILD-TYPE" "CDK5 WILD-TYPE" 
    TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-IB-7644     TCGA-IB-7645 
"CDK5 WILD-TYPE" "CDK5 WILD-TYPE" "CDK5 WILD-TYPE" "CDK5 WILD-TYPE" 
    TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7651 
"CDK5 WILD-TYPE" "CDK5 WILD-TYPE" "CDK5 WILD-TYPE" "CDK5 WILD-TYPE" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887 
"CDK5 WILD-TYPE" "CDK5 WILD-TYPE" "CDK5 WILD-TYPE" "CDK5 WILD-TYPE" 
    TCGA-IB-7888     TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891 
"CDK5 WILD-TYPE" "CDK5 WILD-TYPE" "CDK5 WILD-TYPE"   "CDK5 MUTATED" 
    TCGA-IB-7893     TCGA-IB-7897     TCGA-IB-8126     TCGA-IB-8127 
"CDK5 WILD-TYPE" "CDK5 WILD-TYPE" "CDK5 WILD-TYPE"   "CDK5 MUTATED" 
    TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS 
"CDK5 WILD-TYPE" "CDK5 WILD-TYPE" "CDK5 WILD-TYPE" "CDK5 WILD-TYPE" 
    TCGA-IB-A5ST     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
"CDK5 WILD-TYPE" "CDK5 WILD-TYPE" "CDK5 WILD-TYPE" "CDK5 WILD-TYPE" 
    TCGA-PZ-A5RE     TCGA-Q3-A5QY     TCGA-US-A779     TCGA-US-A77E 
"CDK5 WILD-TYPE" "CDK5 WILD-TYPE" "CDK5 WILD-TYPE" "CDK5 WILD-TYPE" 
    TCGA-US-A77J 
"CDK5 WILD-TYPE" 
[1] "hr="     "8.2e+07"
D288V2, continuous
                vv
clus             STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  CDK5 MUTATED          0        0         1         2         0        0
  CDK5 WILD-TYPE        1        4        10        49         2        3
D288V3, multiclass
                vv
clus             T1+T2 T3+T4
  CDK5 MUTATED       0     3
  CDK5 WILD-TYPE     6    63
D288V4, multiclass
       clus
vv      CDK5 MUTATED CDK5 WILD-TYPE
  T1+T2            0              6
  T3+T4            3             63
D288V5, binary
                cls
clus              0  1
  CDK5 MUTATED    1  2
  CDK5 WILD-TYPE 16 52
[1] "tbl2"
                cls
clus             [,1] [,2]
  CDK5 MUTATED      1    2
  CDK5 WILD-TYPE   16   52
   clus
vv  CDK5 MUTATED CDK5 WILD-TYPE
  0            1             16
  1            2             52
                vv
clus             M0 M1 MX
  CDK5 MUTATED    3  0  0
  CDK5 WILD-TYPE 36  3 30
D288V6, multiclass
    clus
vv   CDK5 MUTATED CDK5 WILD-TYPE
  M0            3             36
  M1            0              3
  MX            0             30
D288V7, binary
                cls
clus              0  1
  CDK5 MUTATED    0  3
  CDK5 WILD-TYPE 36 33
[1] "tbl2"
                cls
clus             [,1] [,2]
  CDK5 MUTATED      0    3
  CDK5 WILD-TYPE   36   33
        clus
vv       CDK5 MUTATED CDK5 WILD-TYPE
  FEMALE            0             36
  MALE              3             33
                vv
clus             PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  CDK5 MUTATED                                     3
  CDK5 WILD-TYPE                                  62
                vv
clus             PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  CDK5 MUTATED                                       0
  CDK5 WILD-TYPE                                     4
                vv
clus             PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  CDK5 MUTATED                                                  0
  CDK5 WILD-TYPE                                                2
D288V8, multiclass
                                                  clus
vv                                                 CDK5 MUTATED CDK5 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                         3             62
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                       0              4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA            0              2
D288V9, continuous
[1] "Remove cluster labels:" "CDK5 MUTATED"          
clus
  CDK5 MUTATED CDK5 WILD-TYPE 
             2             20 
    TCGA-F2-6880     TCGA-FB-A4P5     TCGA-FB-A4P6     TCGA-FB-A5VM 
"CDK5 WILD-TYPE" "CDK5 WILD-TYPE" "CDK5 WILD-TYPE" "CDK5 WILD-TYPE" 
    TCGA-FB-A78T     TCGA-FB-A7DR     TCGA-H6-8124     TCGA-H6-A45N 
"CDK5 WILD-TYPE" "CDK5 WILD-TYPE" "CDK5 WILD-TYPE" "CDK5 WILD-TYPE" 
    TCGA-H8-A6C1     TCGA-IB-7644     TCGA-IB-7649     TCGA-IB-7651 
"CDK5 WILD-TYPE" "CDK5 WILD-TYPE" "CDK5 WILD-TYPE" "CDK5 WILD-TYPE" 
    TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887     TCGA-IB-8126 
"CDK5 WILD-TYPE" "CDK5 WILD-TYPE" "CDK5 WILD-TYPE" "CDK5 WILD-TYPE" 
    TCGA-IB-A5SS     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
"CDK5 WILD-TYPE" "CDK5 WILD-TYPE" "CDK5 WILD-TYPE" "CDK5 WILD-TYPE" 
D288V10, continuous
[1] "Remove cluster labels:" "CDK5 MUTATED"          
clus
  CDK5 MUTATED CDK5 WILD-TYPE 
             2             17 
    TCGA-FB-A4P5     TCGA-FB-A4P6     TCGA-FB-A5VM     TCGA-FB-A78T 
"CDK5 WILD-TYPE" "CDK5 WILD-TYPE" "CDK5 WILD-TYPE" "CDK5 WILD-TYPE" 
    TCGA-FB-A7DR     TCGA-H6-8124     TCGA-H8-A6C1     TCGA-IB-7644 
"CDK5 WILD-TYPE" "CDK5 WILD-TYPE" "CDK5 WILD-TYPE" "CDK5 WILD-TYPE" 
    TCGA-IB-7649     TCGA-IB-7651     TCGA-IB-7885     TCGA-IB-7886 
"CDK5 WILD-TYPE" "CDK5 WILD-TYPE" "CDK5 WILD-TYPE" "CDK5 WILD-TYPE" 
    TCGA-IB-8126     TCGA-IB-A5SS     TCGA-IB-A6UG     TCGA-LB-A7SX 
"CDK5 WILD-TYPE" "CDK5 WILD-TYPE" "CDK5 WILD-TYPE" "CDK5 WILD-TYPE" 
    TCGA-OE-A75W 
"CDK5 WILD-TYPE" 
                vv
clus             R0 R1 RX
  CDK5 MUTATED    2  1  0
  CDK5 WILD-TYPE 40 23  2
D288V11, multiclass
    clus
vv   CDK5 MUTATED CDK5 WILD-TYPE
  R0            2             40
  R1            1             23
  RX            0              2
D288V12, continuous

Clustering(289) Variable = HIRA MUTATION ANALYSIS
D289V1, survival
                sevent
clus2             0  1
  HIRA MUTATED    5  2
  HIRA WILD-TYPE 35 27
  HIRA MUTATED HIRA WILD-TYPE 
             7             62 
  HIRA MUTATED HIRA WILD-TYPE 
             2             27 
$`HIRA MUTATED`
TCGA-F2-7276 TCGA-FB-A5VM TCGA-H6-8124 TCGA-HZ-7919 TCGA-HZ-8002 TCGA-HZ-8003 
        7.10         2.47        12.89         0.66         0.79         0.69 
TCGA-US-A77J 
       18.67 

$`HIRA WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-A44G TCGA-F2-A44H TCGA-FB-A4P5 
       10.98         9.70        11.84         5.03        19.27         0.13 
TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A78T TCGA-FB-A7DR TCGA-FZ-5920 TCGA-FZ-5922 
       11.93        12.66         0.03         5.46         2.01        36.20 
TCGA-FZ-5923 TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-7922 
       20.81         7.66        13.02         7.89         0.92         0.13 
TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8005 
        0.26        12.13        11.87         0.26         0.62         3.95 
TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H 
        0.92         0.53         0.16         2.99         0.76         0.95 
TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 
        6.38         1.51        11.41        49.38         4.77        21.90 
TCGA-IB-7649 TCGA-IB-7651 TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 
       15.35        19.82        15.65        27.98         4.04         3.62 
TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-7897 
       43.79        15.81        19.66        16.04         3.85        15.98 
TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS 
        0.56        17.16        10.82         9.86         7.20        15.12 
TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W TCGA-PZ-A5RE TCGA-Q3-A5QY 
        0.26         1.35         4.18         3.62         8.12        13.68 
TCGA-US-A779 TCGA-US-A77E 
       16.80        14.14 

  HIRA MUTATED HIRA WILD-TYPE 
          0.66           0.03 
  HIRA MUTATED HIRA WILD-TYPE 
         18.67          49.38 
  HIRA MUTATED HIRA WILD-TYPE 
         2.470          8.005 
[1] "0.7 - 18.7 (2.5)" "0.0 - 49.4 (8.0)"
    TCGA-F2-6879     TCGA-F2-6880     TCGA-F2-7273     TCGA-F2-7276 
"HIRA WILD-TYPE" "HIRA WILD-TYPE" "HIRA WILD-TYPE"   "HIRA MUTATED" 
    TCGA-F2-A44G     TCGA-F2-A44H     TCGA-FB-A4P5     TCGA-FB-A4P6 
"HIRA WILD-TYPE" "HIRA WILD-TYPE" "HIRA WILD-TYPE" "HIRA WILD-TYPE" 
    TCGA-FB-A545     TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-FB-A7DR 
"HIRA WILD-TYPE"   "HIRA MUTATED" "HIRA WILD-TYPE" "HIRA WILD-TYPE" 
    TCGA-FZ-5920     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-H6-8124 
"HIRA WILD-TYPE" "HIRA WILD-TYPE" "HIRA WILD-TYPE"   "HIRA MUTATED" 
    TCGA-H6-A45N     TCGA-H8-A6C1     TCGA-HZ-7289     TCGA-HZ-7918 
"HIRA WILD-TYPE" "HIRA WILD-TYPE" "HIRA WILD-TYPE" "HIRA WILD-TYPE" 
    TCGA-HZ-7919     TCGA-HZ-7922     TCGA-HZ-7923     TCGA-HZ-7924 
  "HIRA MUTATED" "HIRA WILD-TYPE" "HIRA WILD-TYPE" "HIRA WILD-TYPE" 
    TCGA-HZ-7925     TCGA-HZ-7926     TCGA-HZ-8001     TCGA-HZ-8002 
"HIRA WILD-TYPE" "HIRA WILD-TYPE" "HIRA WILD-TYPE"   "HIRA MUTATED" 
    TCGA-HZ-8003     TCGA-HZ-8005     TCGA-HZ-8315     TCGA-HZ-8317 
  "HIRA MUTATED" "HIRA WILD-TYPE" "HIRA WILD-TYPE" "HIRA WILD-TYPE" 
    TCGA-HZ-8636     TCGA-HZ-8638     TCGA-HZ-A49G     TCGA-HZ-A49H 
"HIRA WILD-TYPE" "HIRA WILD-TYPE" "HIRA WILD-TYPE" "HIRA WILD-TYPE" 
    TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-IB-7644     TCGA-IB-7645 
"HIRA WILD-TYPE" "HIRA WILD-TYPE" "HIRA WILD-TYPE" "HIRA WILD-TYPE" 
    TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7651 
"HIRA WILD-TYPE" "HIRA WILD-TYPE" "HIRA WILD-TYPE" "HIRA WILD-TYPE" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887 
"HIRA WILD-TYPE" "HIRA WILD-TYPE" "HIRA WILD-TYPE" "HIRA WILD-TYPE" 
    TCGA-IB-7888     TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891 
"HIRA WILD-TYPE" "HIRA WILD-TYPE" "HIRA WILD-TYPE" "HIRA WILD-TYPE" 
    TCGA-IB-7893     TCGA-IB-7897     TCGA-IB-8126     TCGA-IB-8127 
"HIRA WILD-TYPE" "HIRA WILD-TYPE" "HIRA WILD-TYPE" "HIRA WILD-TYPE" 
    TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS 
"HIRA WILD-TYPE" "HIRA WILD-TYPE" "HIRA WILD-TYPE" "HIRA WILD-TYPE" 
    TCGA-IB-A5ST     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
"HIRA WILD-TYPE" "HIRA WILD-TYPE" "HIRA WILD-TYPE" "HIRA WILD-TYPE" 
    TCGA-PZ-A5RE     TCGA-Q3-A5QY     TCGA-US-A779     TCGA-US-A77E 
"HIRA WILD-TYPE" "HIRA WILD-TYPE" "HIRA WILD-TYPE" "HIRA WILD-TYPE" 
    TCGA-US-A77J 
  "HIRA MUTATED" 
    TCGA-F2-6879     TCGA-F2-6880     TCGA-F2-7273     TCGA-F2-7276 
"HIRA WILD-TYPE" "HIRA WILD-TYPE" "HIRA WILD-TYPE"   "HIRA MUTATED" 
    TCGA-F2-A44G     TCGA-F2-A44H     TCGA-FB-A4P5     TCGA-FB-A4P6 
"HIRA WILD-TYPE" "HIRA WILD-TYPE" "HIRA WILD-TYPE" "HIRA WILD-TYPE" 
    TCGA-FB-A545     TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-FB-A7DR 
"HIRA WILD-TYPE"   "HIRA MUTATED" "HIRA WILD-TYPE" "HIRA WILD-TYPE" 
    TCGA-FZ-5920     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-H6-8124 
"HIRA WILD-TYPE" "HIRA WILD-TYPE" "HIRA WILD-TYPE"   "HIRA MUTATED" 
    TCGA-H6-A45N     TCGA-H8-A6C1     TCGA-HZ-7289     TCGA-HZ-7918 
"HIRA WILD-TYPE" "HIRA WILD-TYPE" "HIRA WILD-TYPE" "HIRA WILD-TYPE" 
    TCGA-HZ-7919     TCGA-HZ-7922     TCGA-HZ-7923     TCGA-HZ-7924 
  "HIRA MUTATED" "HIRA WILD-TYPE" "HIRA WILD-TYPE" "HIRA WILD-TYPE" 
    TCGA-HZ-7925     TCGA-HZ-7926     TCGA-HZ-8001     TCGA-HZ-8002 
"HIRA WILD-TYPE" "HIRA WILD-TYPE" "HIRA WILD-TYPE"   "HIRA MUTATED" 
    TCGA-HZ-8003     TCGA-HZ-8005     TCGA-HZ-8315     TCGA-HZ-8317 
  "HIRA MUTATED" "HIRA WILD-TYPE" "HIRA WILD-TYPE" "HIRA WILD-TYPE" 
    TCGA-HZ-8636     TCGA-HZ-8638     TCGA-HZ-A49G     TCGA-HZ-A49H 
"HIRA WILD-TYPE" "HIRA WILD-TYPE" "HIRA WILD-TYPE" "HIRA WILD-TYPE" 
    TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-IB-7644     TCGA-IB-7645 
"HIRA WILD-TYPE" "HIRA WILD-TYPE" "HIRA WILD-TYPE" "HIRA WILD-TYPE" 
    TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7651 
"HIRA WILD-TYPE" "HIRA WILD-TYPE" "HIRA WILD-TYPE" "HIRA WILD-TYPE" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887 
"HIRA WILD-TYPE" "HIRA WILD-TYPE" "HIRA WILD-TYPE" "HIRA WILD-TYPE" 
    TCGA-IB-7888     TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891 
"HIRA WILD-TYPE" "HIRA WILD-TYPE" "HIRA WILD-TYPE" "HIRA WILD-TYPE" 
    TCGA-IB-7893     TCGA-IB-7897     TCGA-IB-8126     TCGA-IB-8127 
"HIRA WILD-TYPE" "HIRA WILD-TYPE" "HIRA WILD-TYPE" "HIRA WILD-TYPE" 
    TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS 
"HIRA WILD-TYPE" "HIRA WILD-TYPE" "HIRA WILD-TYPE" "HIRA WILD-TYPE" 
    TCGA-IB-A5ST     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
"HIRA WILD-TYPE" "HIRA WILD-TYPE" "HIRA WILD-TYPE" "HIRA WILD-TYPE" 
    TCGA-PZ-A5RE     TCGA-Q3-A5QY     TCGA-US-A779     TCGA-US-A77E 
"HIRA WILD-TYPE" "HIRA WILD-TYPE" "HIRA WILD-TYPE" "HIRA WILD-TYPE" 
    TCGA-US-A77J 
  "HIRA MUTATED" 
    TCGA-F2-6879     TCGA-F2-6880     TCGA-F2-7273     TCGA-F2-7276 
"HIRA WILD-TYPE" "HIRA WILD-TYPE" "HIRA WILD-TYPE"   "HIRA MUTATED" 
    TCGA-F2-A44G     TCGA-F2-A44H     TCGA-FB-A4P5     TCGA-FB-A4P6 
"HIRA WILD-TYPE" "HIRA WILD-TYPE" "HIRA WILD-TYPE" "HIRA WILD-TYPE" 
    TCGA-FB-A545     TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-FB-A7DR 
"HIRA WILD-TYPE"   "HIRA MUTATED" "HIRA WILD-TYPE" "HIRA WILD-TYPE" 
    TCGA-FZ-5920     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-H6-8124 
"HIRA WILD-TYPE" "HIRA WILD-TYPE" "HIRA WILD-TYPE"   "HIRA MUTATED" 
    TCGA-H6-A45N     TCGA-H8-A6C1     TCGA-HZ-7289     TCGA-HZ-7918 
"HIRA WILD-TYPE" "HIRA WILD-TYPE" "HIRA WILD-TYPE" "HIRA WILD-TYPE" 
    TCGA-HZ-7919     TCGA-HZ-7922     TCGA-HZ-7923     TCGA-HZ-7924 
  "HIRA MUTATED" "HIRA WILD-TYPE" "HIRA WILD-TYPE" "HIRA WILD-TYPE" 
    TCGA-HZ-7925     TCGA-HZ-7926     TCGA-HZ-8001     TCGA-HZ-8002 
"HIRA WILD-TYPE" "HIRA WILD-TYPE" "HIRA WILD-TYPE"   "HIRA MUTATED" 
    TCGA-HZ-8003     TCGA-HZ-8005     TCGA-HZ-8315     TCGA-HZ-8317 
  "HIRA MUTATED" "HIRA WILD-TYPE" "HIRA WILD-TYPE" "HIRA WILD-TYPE" 
    TCGA-HZ-8636     TCGA-HZ-8638     TCGA-HZ-A49G     TCGA-HZ-A49H 
"HIRA WILD-TYPE" "HIRA WILD-TYPE" "HIRA WILD-TYPE" "HIRA WILD-TYPE" 
    TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-IB-7644     TCGA-IB-7645 
"HIRA WILD-TYPE" "HIRA WILD-TYPE" "HIRA WILD-TYPE" "HIRA WILD-TYPE" 
    TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7651 
"HIRA WILD-TYPE" "HIRA WILD-TYPE" "HIRA WILD-TYPE" "HIRA WILD-TYPE" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887 
"HIRA WILD-TYPE" "HIRA WILD-TYPE" "HIRA WILD-TYPE" "HIRA WILD-TYPE" 
    TCGA-IB-7888     TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891 
"HIRA WILD-TYPE" "HIRA WILD-TYPE" "HIRA WILD-TYPE" "HIRA WILD-TYPE" 
    TCGA-IB-7893     TCGA-IB-7897     TCGA-IB-8126     TCGA-IB-8127 
"HIRA WILD-TYPE" "HIRA WILD-TYPE" "HIRA WILD-TYPE" "HIRA WILD-TYPE" 
    TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS 
"HIRA WILD-TYPE" "HIRA WILD-TYPE" "HIRA WILD-TYPE" "HIRA WILD-TYPE" 
    TCGA-IB-A5ST     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
"HIRA WILD-TYPE" "HIRA WILD-TYPE" "HIRA WILD-TYPE" "HIRA WILD-TYPE" 
    TCGA-PZ-A5RE     TCGA-Q3-A5QY     TCGA-US-A779     TCGA-US-A77E 
"HIRA WILD-TYPE" "HIRA WILD-TYPE" "HIRA WILD-TYPE" "HIRA WILD-TYPE" 
    TCGA-US-A77J 
  "HIRA MUTATED" 
[1] "hr=" "1.3"
D289V2, continuous
                vv
clus             STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  HIRA MUTATED          0        1         0         6         0        0
  HIRA WILD-TYPE        1        3        11        45         2        3
D289V3, multiclass
                vv
clus             T1+T2 T3+T4
  HIRA MUTATED       1     6
  HIRA WILD-TYPE     5    60
D289V4, multiclass
       clus
vv      HIRA MUTATED HIRA WILD-TYPE
  T1+T2            1              5
  T3+T4            6             60
D289V5, binary
                cls
clus              0  1
  HIRA MUTATED    1  6
  HIRA WILD-TYPE 16 48
[1] "tbl2"
                cls
clus             [,1] [,2]
  HIRA MUTATED      1    6
  HIRA WILD-TYPE   16   48
   clus
vv  HIRA MUTATED HIRA WILD-TYPE
  0            1             16
  1            6             48
                vv
clus             M0 M1 MX
  HIRA MUTATED    4  0  3
  HIRA WILD-TYPE 35  3 27
D289V6, multiclass
    clus
vv   HIRA MUTATED HIRA WILD-TYPE
  M0            4             35
  M1            0              3
  MX            3             27
D289V7, binary
                cls
clus              0  1
  HIRA MUTATED    4  3
  HIRA WILD-TYPE 32 33
[1] "tbl2"
                cls
clus             [,1] [,2]
  HIRA MUTATED      4    3
  HIRA WILD-TYPE   32   33
        clus
vv       HIRA MUTATED HIRA WILD-TYPE
  FEMALE            4             32
  MALE              3             33
                vv
clus             PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  HIRA MUTATED                                     7
  HIRA WILD-TYPE                                  58
                vv
clus             PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  HIRA MUTATED                                       0
  HIRA WILD-TYPE                                     4
                vv
clus             PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  HIRA MUTATED                                                  0
  HIRA WILD-TYPE                                                2
D289V8, multiclass
                                                  clus
vv                                                 HIRA MUTATED HIRA WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                         7             58
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                       0              4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA            0              2
D289V9, continuous
[1] "Remove cluster labels:" "HIRA MUTATED"          
clus
  HIRA MUTATED HIRA WILD-TYPE 
             2             20 
    TCGA-F2-6880     TCGA-FB-A4P5     TCGA-FB-A4P6     TCGA-FB-A78T 
"HIRA WILD-TYPE" "HIRA WILD-TYPE" "HIRA WILD-TYPE" "HIRA WILD-TYPE" 
    TCGA-FB-A7DR     TCGA-H6-A45N     TCGA-H8-A6C1     TCGA-IB-7644 
"HIRA WILD-TYPE" "HIRA WILD-TYPE" "HIRA WILD-TYPE" "HIRA WILD-TYPE" 
    TCGA-IB-7649     TCGA-IB-7651     TCGA-IB-7885     TCGA-IB-7886 
"HIRA WILD-TYPE" "HIRA WILD-TYPE" "HIRA WILD-TYPE" "HIRA WILD-TYPE" 
    TCGA-IB-7887     TCGA-IB-7891     TCGA-IB-8126     TCGA-IB-8127 
"HIRA WILD-TYPE" "HIRA WILD-TYPE" "HIRA WILD-TYPE" "HIRA WILD-TYPE" 
    TCGA-IB-A5SS     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
"HIRA WILD-TYPE" "HIRA WILD-TYPE" "HIRA WILD-TYPE" "HIRA WILD-TYPE" 
D289V10, continuous
[1] "Remove cluster labels:" "HIRA MUTATED"          
clus
  HIRA MUTATED HIRA WILD-TYPE 
             2             17 
    TCGA-FB-A4P5     TCGA-FB-A4P6     TCGA-FB-A78T     TCGA-FB-A7DR 
"HIRA WILD-TYPE" "HIRA WILD-TYPE" "HIRA WILD-TYPE" "HIRA WILD-TYPE" 
    TCGA-H8-A6C1     TCGA-IB-7644     TCGA-IB-7649     TCGA-IB-7651 
"HIRA WILD-TYPE" "HIRA WILD-TYPE" "HIRA WILD-TYPE" "HIRA WILD-TYPE" 
    TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7891     TCGA-IB-8126 
"HIRA WILD-TYPE" "HIRA WILD-TYPE" "HIRA WILD-TYPE" "HIRA WILD-TYPE" 
    TCGA-IB-8127     TCGA-IB-A5SS     TCGA-IB-A6UG     TCGA-LB-A7SX 
"HIRA WILD-TYPE" "HIRA WILD-TYPE" "HIRA WILD-TYPE" "HIRA WILD-TYPE" 
    TCGA-OE-A75W 
"HIRA WILD-TYPE" 
                vv
clus             R0 R1 RX
  HIRA MUTATED    6  1  0
  HIRA WILD-TYPE 36 23  2
D289V11, multiclass
    clus
vv   HIRA MUTATED HIRA WILD-TYPE
  R0            6             36
  R1            1             23
  RX            0              2
D289V12, continuous

Clustering(290) Variable = GIGYF2 MUTATION ANALYSIS
D290V1, survival
                  sevent
clus2               0  1
  GIGYF2 MUTATED    3  4
  GIGYF2 WILD-TYPE 37 25
  GIGYF2 MUTATED GIGYF2 WILD-TYPE 
               7               62 
  GIGYF2 MUTATED GIGYF2 WILD-TYPE 
               4               25 
$`GIGYF2 MUTATED`
TCGA-FB-A7DR TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8638 TCGA-IB-7645 TCGA-IB-7887 
        5.46         0.69         3.95         2.99        49.38         3.62 
TCGA-IB-7897 
       15.98 

$`GIGYF2 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P5 TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FZ-5920 
        0.13        11.93        12.66         2.47         0.03         2.01 
TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7289 
       36.20        20.81        12.89         7.66        13.02         7.89 
TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 
        0.92         0.66         0.13         0.26        12.13        11.87 
TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8636 
        0.26         0.62         0.79         0.92         0.53         0.16 
TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7646 
        0.76         0.95         6.38         1.51        11.41         4.77 
TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7651 TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7886 
       21.90        15.35        19.82        15.65        27.98         4.04 
TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-8126 
       43.79        15.81        19.66        16.04         3.85         0.56 
TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST 
       17.16        10.82         9.86         7.20        15.12         0.26 
TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 
        1.35         4.18         3.62         8.12        13.68        16.80 
TCGA-US-A77E TCGA-US-A77J 
       14.14        18.67 

  GIGYF2 MUTATED GIGYF2 WILD-TYPE 
            0.69             0.03 
  GIGYF2 MUTATED GIGYF2 WILD-TYPE 
           49.38            43.79 
  GIGYF2 MUTATED GIGYF2 WILD-TYPE 
           3.950            8.005 
[1] "0.7 - 49.4 (4.0)" "0.0 - 43.8 (8.0)"
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
"GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
"GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE"   "GIGYF2 MUTATED" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
"GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
"GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
  "GIGYF2 MUTATED"   "GIGYF2 MUTATED" "GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
"GIGYF2 WILD-TYPE"   "GIGYF2 MUTATED" "GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
"GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE"   "GIGYF2 MUTATED" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
"GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
"GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE"   "GIGYF2 MUTATED" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
"GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
"GIGYF2 WILD-TYPE"   "GIGYF2 MUTATED" "GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
"GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" 
      TCGA-US-A77J 
"GIGYF2 WILD-TYPE" 
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
"GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
"GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE"   "GIGYF2 MUTATED" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
"GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
"GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
  "GIGYF2 MUTATED"   "GIGYF2 MUTATED" "GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
"GIGYF2 WILD-TYPE"   "GIGYF2 MUTATED" "GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
"GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE"   "GIGYF2 MUTATED" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
"GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
"GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE"   "GIGYF2 MUTATED" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
"GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
"GIGYF2 WILD-TYPE"   "GIGYF2 MUTATED" "GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
"GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" 
      TCGA-US-A77J 
"GIGYF2 WILD-TYPE" 
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
"GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
"GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE"   "GIGYF2 MUTATED" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
"GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
"GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
  "GIGYF2 MUTATED"   "GIGYF2 MUTATED" "GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
"GIGYF2 WILD-TYPE"   "GIGYF2 MUTATED" "GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
"GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE"   "GIGYF2 MUTATED" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
"GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
"GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE"   "GIGYF2 MUTATED" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
"GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
"GIGYF2 WILD-TYPE"   "GIGYF2 MUTATED" "GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
"GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" 
      TCGA-US-A77J 
"GIGYF2 WILD-TYPE" 
[1] "hr=" "1.2"
D290V2, continuous
                  vv
clus               STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  GIGYF2 MUTATED          1        0         1         5         0        0
  GIGYF2 WILD-TYPE        0        4        10        46         2        3
D290V3, multiclass
                  vv
clus               T1+T2 T3+T4
  GIGYF2 MUTATED       1     6
  GIGYF2 WILD-TYPE     5    60
D290V4, multiclass
       clus
vv      GIGYF2 MUTATED GIGYF2 WILD-TYPE
  T1+T2              1                5
  T3+T4              6               60
D290V5, binary
                  cls
clus                0  1
  GIGYF2 MUTATED    1  5
  GIGYF2 WILD-TYPE 16 49
[1] "tbl2"
                  cls
clus               [,1] [,2]
  GIGYF2 MUTATED      1    5
  GIGYF2 WILD-TYPE   16   49
   clus
vv  GIGYF2 MUTATED GIGYF2 WILD-TYPE
  0              1               16
  1              5               49
                  vv
clus               M0 M1 MX
  GIGYF2 MUTATED    4  0  3
  GIGYF2 WILD-TYPE 35  3 27
D290V6, multiclass
    clus
vv   GIGYF2 MUTATED GIGYF2 WILD-TYPE
  M0              4               35
  M1              0                3
  MX              3               27
D290V7, binary
                  cls
clus                0  1
  GIGYF2 MUTATED    5  2
  GIGYF2 WILD-TYPE 31 34
[1] "tbl2"
                  cls
clus               [,1] [,2]
  GIGYF2 MUTATED      5    2
  GIGYF2 WILD-TYPE   31   34
        clus
vv       GIGYF2 MUTATED GIGYF2 WILD-TYPE
  FEMALE              5               31
  MALE                2               34
                  vv
clus               PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  GIGYF2 MUTATED                                     5
  GIGYF2 WILD-TYPE                                  60
                  vv
clus               PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  GIGYF2 MUTATED                                       0
  GIGYF2 WILD-TYPE                                     4
                  vv
clus               PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  GIGYF2 MUTATED                                                  2
  GIGYF2 WILD-TYPE                                                0
D290V8, multiclass
                                                  clus
vv                                                 GIGYF2 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                           5
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                         0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA              2
                                                  clus
vv                                                 GIGYF2 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                            60
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                           4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                0
D290V9, continuous
[1] "Remove cluster labels:" "GIGYF2 MUTATED"        
clus
  GIGYF2 MUTATED GIGYF2 WILD-TYPE 
               2               20 
      TCGA-F2-6880       TCGA-FB-A4P5       TCGA-FB-A4P6       TCGA-FB-A5VM 
"GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" 
      TCGA-FB-A78T       TCGA-H6-8124       TCGA-H6-A45N       TCGA-H8-A6C1 
"GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" 
      TCGA-IB-7644       TCGA-IB-7649       TCGA-IB-7651       TCGA-IB-7885 
"GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" 
      TCGA-IB-7886       TCGA-IB-7891       TCGA-IB-8126       TCGA-IB-8127 
"GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" 
      TCGA-IB-A5SS       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" 
D290V10, continuous
[1] "Remove cluster labels:" "GIGYF2 MUTATED"        
clus
  GIGYF2 MUTATED GIGYF2 WILD-TYPE 
               1               18 
      TCGA-FB-A4P5       TCGA-FB-A4P6       TCGA-FB-A5VM       TCGA-FB-A78T 
"GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" 
      TCGA-H6-8124       TCGA-H8-A6C1       TCGA-IB-7644       TCGA-IB-7649 
"GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" 
      TCGA-IB-7651       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7891 
"GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" 
      TCGA-IB-8126       TCGA-IB-8127       TCGA-IB-A5SS       TCGA-IB-A6UG 
"GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" 
      TCGA-LB-A7SX       TCGA-OE-A75W 
"GIGYF2 WILD-TYPE" "GIGYF2 WILD-TYPE" 
                  vv
clus               R0 R1 RX
  GIGYF2 MUTATED    5  2  0
  GIGYF2 WILD-TYPE 37 22  2
D290V11, multiclass
    clus
vv   GIGYF2 MUTATED GIGYF2 WILD-TYPE
  R0              5               37
  R1              2               22
  RX              0                2
D290V12, continuous

Clustering(291) Variable = KCNA4 MUTATION ANALYSIS
D291V1, survival
                 sevent
clus2              0  1
  KCNA4 MUTATED    5  4
  KCNA4 WILD-TYPE 35 25
  KCNA4 MUTATED KCNA4 WILD-TYPE 
              9              60 
  KCNA4 MUTATED KCNA4 WILD-TYPE 
              4              25 
$`KCNA4 MUTATED`
TCGA-FB-A7DR TCGA-HZ-8001 TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-A4BH TCGA-IB-7644 
        5.46         0.62         0.69         3.95         6.38        11.41 
TCGA-IB-7646 TCGA-IB-7651 TCGA-OE-A75W 
        4.77        19.82         3.62 

$`KCNA4 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P5 TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FZ-5920 
        0.13        11.93        12.66         2.47         0.03         2.01 
TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7289 
       36.20        20.81        12.89         7.66        13.02         7.89 
TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 
        0.92         0.66         0.13         0.26        12.13        11.87 
TCGA-HZ-7926 TCGA-HZ-8002 TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8636 TCGA-HZ-8638 
        0.26         0.79         0.92         0.53         0.16         2.99 
TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BK TCGA-IB-7645 TCGA-IB-7647 TCGA-IB-7649 
        0.76         0.95         1.51        49.38        21.90        15.35 
TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 
       15.65        27.98         4.04         3.62        43.79        15.81 
TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-8127 
       19.66        16.04         3.85        15.98         0.56        17.16 
TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG 
       10.82         9.86         7.20        15.12         0.26         1.35 
TCGA-LB-A7SX TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
        4.18         8.12        13.68        16.80        14.14        18.67 

  KCNA4 MUTATED KCNA4 WILD-TYPE 
           0.62            0.03 
  KCNA4 MUTATED KCNA4 WILD-TYPE 
          19.82           49.38 
  KCNA4 MUTATED KCNA4 WILD-TYPE 
           4.77            8.91 
[1] "0.6 - 19.8 (4.8)" "0.0 - 49.4 (8.9)"
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE"   "KCNA4 MUTATED" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE"   "KCNA4 MUTATED" "KCNA4 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
  "KCNA4 MUTATED"   "KCNA4 MUTATED" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
  "KCNA4 MUTATED" "KCNA4 WILD-TYPE"   "KCNA4 MUTATED" "KCNA4 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
  "KCNA4 MUTATED" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE"   "KCNA4 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE"   "KCNA4 MUTATED" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-US-A77J 
"KCNA4 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE"   "KCNA4 MUTATED" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE"   "KCNA4 MUTATED" "KCNA4 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
  "KCNA4 MUTATED"   "KCNA4 MUTATED" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
  "KCNA4 MUTATED" "KCNA4 WILD-TYPE"   "KCNA4 MUTATED" "KCNA4 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
  "KCNA4 MUTATED" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE"   "KCNA4 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE"   "KCNA4 MUTATED" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-US-A77J 
"KCNA4 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE"   "KCNA4 MUTATED" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE"   "KCNA4 MUTATED" "KCNA4 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
  "KCNA4 MUTATED"   "KCNA4 MUTATED" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
  "KCNA4 MUTATED" "KCNA4 WILD-TYPE"   "KCNA4 MUTATED" "KCNA4 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
  "KCNA4 MUTATED" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE"   "KCNA4 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE"   "KCNA4 MUTATED" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-US-A77J 
"KCNA4 WILD-TYPE" 
[1] "hr=" "1.9"
D291V2, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  KCNA4 MUTATED          0        0         2         5         1        1
  KCNA4 WILD-TYPE        1        4         9        46         1        2
D291V3, multiclass
                 vv
clus              T1+T2 T3+T4
  KCNA4 MUTATED       0     9
  KCNA4 WILD-TYPE     6    57
D291V4, multiclass
       clus
vv      KCNA4 MUTATED KCNA4 WILD-TYPE
  T1+T2             0               6
  T3+T4             9              57
D291V5, binary
                 cls
clus               0  1
  KCNA4 MUTATED    2  6
  KCNA4 WILD-TYPE 15 48
[1] "tbl2"
                 cls
clus              [,1] [,2]
  KCNA4 MUTATED      2    6
  KCNA4 WILD-TYPE   15   48
   clus
vv  KCNA4 MUTATED KCNA4 WILD-TYPE
  0             2              15
  1             6              48
                 vv
clus              M0 M1 MX
  KCNA4 MUTATED    4  1  4
  KCNA4 WILD-TYPE 35  2 26
D291V6, multiclass
    clus
vv   KCNA4 MUTATED KCNA4 WILD-TYPE
  M0             4              35
  M1             1               2
  MX             4              26
D291V7, binary
                 cls
clus               0  1
  KCNA4 MUTATED    3  6
  KCNA4 WILD-TYPE 33 30
[1] "tbl2"
                 cls
clus              [,1] [,2]
  KCNA4 MUTATED      3    6
  KCNA4 WILD-TYPE   33   30
        clus
vv       KCNA4 MUTATED KCNA4 WILD-TYPE
  FEMALE             3              33
  MALE               6              30
                 vv
clus              PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  KCNA4 MUTATED                                     8
  KCNA4 WILD-TYPE                                  57
                 vv
clus              PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  KCNA4 MUTATED                                       0
  KCNA4 WILD-TYPE                                     4
                 vv
clus              PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  KCNA4 MUTATED                                                  1
  KCNA4 WILD-TYPE                                                1
D291V8, multiclass
                                                  clus
vv                                                 KCNA4 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                          8
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                        0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA             1
                                                  clus
vv                                                 KCNA4 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                           57
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                          4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA               1
D291V9, continuous
D291V10, continuous
                 vv
clus              R0 R1 RX
  KCNA4 MUTATED    5  4  0
  KCNA4 WILD-TYPE 37 20  2
D291V11, multiclass
    clus
vv   KCNA4 MUTATED KCNA4 WILD-TYPE
  R0             5              37
  R1             4              20
  RX             0               2
D291V12, continuous

Clustering(292) Variable = COL22A1 MUTATION ANALYSIS
D292V1, survival
                   sevent
clus2                0  1
  COL22A1 MUTATED    5  3
  COL22A1 WILD-TYPE 35 26
  COL22A1 MUTATED COL22A1 WILD-TYPE 
                8                61 
  COL22A1 MUTATED COL22A1 WILD-TYPE 
                3                26 
$`COL22A1 MUTATED`
TCGA-F2-7273 TCGA-H6-8124 TCGA-HZ-7924 TCGA-HZ-8003 TCGA-IB-7651 TCGA-IB-7886 
       11.84        12.89        12.13         0.69        19.82         4.04 
TCGA-IB-7891 TCGA-IB-A5SP 
       16.04         9.86 

$`COL22A1 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H TCGA-FB-A4P5 
       10.98         9.70         7.10         5.03        19.27         0.13 
TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR TCGA-FZ-5920 
       11.93        12.66         2.47         0.03         5.46         2.01 
TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7289 TCGA-HZ-7918 
       36.20        20.81         7.66        13.02         7.89         0.92 
TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8001 
        0.66         0.13         0.26        11.87         0.26         0.62 
TCGA-HZ-8002 TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8636 TCGA-HZ-8638 
        0.79         3.95         0.92         0.53         0.16         2.99 
TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7645 
        0.76         0.95         6.38         1.51        11.41        49.38 
TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7887 
        4.77        21.90        15.35        15.65        27.98         3.62 
TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-8126 
       43.79        15.81        19.66         3.85        15.98         0.56 
TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG 
       17.16        10.82         7.20        15.12         0.26         1.35 
TCGA-LB-A7SX TCGA-OE-A75W TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E 
        4.18         3.62         8.12        13.68        16.80        14.14 
TCGA-US-A77J 
       18.67 

  COL22A1 MUTATED COL22A1 WILD-TYPE 
             0.69              0.03 
  COL22A1 MUTATED COL22A1 WILD-TYPE 
            19.82             49.38 
  COL22A1 MUTATED COL22A1 WILD-TYPE 
           11.985             7.100 
[1] "0.7 - 19.8 (12.0)" "0.0 - 49.4 (7.1)" 
       TCGA-F2-6879        TCGA-F2-6880        TCGA-F2-7273        TCGA-F2-7276 
"COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE"   "COL22A1 MUTATED" "COL22A1 WILD-TYPE" 
       TCGA-F2-A44G        TCGA-F2-A44H        TCGA-FB-A4P5        TCGA-FB-A4P6 
"COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" 
       TCGA-FB-A545        TCGA-FB-A5VM        TCGA-FB-A78T        TCGA-FB-A7DR 
"COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" 
       TCGA-FZ-5920        TCGA-FZ-5922        TCGA-FZ-5923        TCGA-H6-8124 
"COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE"   "COL22A1 MUTATED" 
       TCGA-H6-A45N        TCGA-H8-A6C1        TCGA-HZ-7289        TCGA-HZ-7918 
"COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" 
       TCGA-HZ-7919        TCGA-HZ-7922        TCGA-HZ-7923        TCGA-HZ-7924 
"COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE"   "COL22A1 MUTATED" 
       TCGA-HZ-7925        TCGA-HZ-7926        TCGA-HZ-8001        TCGA-HZ-8002 
"COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" 
       TCGA-HZ-8003        TCGA-HZ-8005        TCGA-HZ-8315        TCGA-HZ-8317 
  "COL22A1 MUTATED" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" 
       TCGA-HZ-8636        TCGA-HZ-8638        TCGA-HZ-A49G        TCGA-HZ-A49H 
"COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" 
       TCGA-HZ-A4BH        TCGA-HZ-A4BK        TCGA-IB-7644        TCGA-IB-7645 
"COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" 
       TCGA-IB-7646        TCGA-IB-7647        TCGA-IB-7649        TCGA-IB-7651 
"COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE"   "COL22A1 MUTATED" 
       TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-7886        TCGA-IB-7887 
"COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE"   "COL22A1 MUTATED" "COL22A1 WILD-TYPE" 
       TCGA-IB-7888        TCGA-IB-7889        TCGA-IB-7890        TCGA-IB-7891 
"COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE"   "COL22A1 MUTATED" 
       TCGA-IB-7893        TCGA-IB-7897        TCGA-IB-8126        TCGA-IB-8127 
"COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" 
       TCGA-IB-A5SO        TCGA-IB-A5SP        TCGA-IB-A5SQ        TCGA-IB-A5SS 
"COL22A1 WILD-TYPE"   "COL22A1 MUTATED" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" 
       TCGA-IB-A5ST        TCGA-IB-A6UG        TCGA-LB-A7SX        TCGA-OE-A75W 
"COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" 
       TCGA-PZ-A5RE        TCGA-Q3-A5QY        TCGA-US-A779        TCGA-US-A77E 
"COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" 
       TCGA-US-A77J 
"COL22A1 WILD-TYPE" 
       TCGA-F2-6879        TCGA-F2-6880        TCGA-F2-7273        TCGA-F2-7276 
"COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE"   "COL22A1 MUTATED" "COL22A1 WILD-TYPE" 
       TCGA-F2-A44G        TCGA-F2-A44H        TCGA-FB-A4P5        TCGA-FB-A4P6 
"COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" 
       TCGA-FB-A545        TCGA-FB-A5VM        TCGA-FB-A78T        TCGA-FB-A7DR 
"COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" 
       TCGA-FZ-5920        TCGA-FZ-5922        TCGA-FZ-5923        TCGA-H6-8124 
"COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE"   "COL22A1 MUTATED" 
       TCGA-H6-A45N        TCGA-H8-A6C1        TCGA-HZ-7289        TCGA-HZ-7918 
"COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" 
       TCGA-HZ-7919        TCGA-HZ-7922        TCGA-HZ-7923        TCGA-HZ-7924 
"COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE"   "COL22A1 MUTATED" 
       TCGA-HZ-7925        TCGA-HZ-7926        TCGA-HZ-8001        TCGA-HZ-8002 
"COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" 
       TCGA-HZ-8003        TCGA-HZ-8005        TCGA-HZ-8315        TCGA-HZ-8317 
  "COL22A1 MUTATED" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" 
       TCGA-HZ-8636        TCGA-HZ-8638        TCGA-HZ-A49G        TCGA-HZ-A49H 
"COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" 
       TCGA-HZ-A4BH        TCGA-HZ-A4BK        TCGA-IB-7644        TCGA-IB-7645 
"COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" 
       TCGA-IB-7646        TCGA-IB-7647        TCGA-IB-7649        TCGA-IB-7651 
"COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE"   "COL22A1 MUTATED" 
       TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-7886        TCGA-IB-7887 
"COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE"   "COL22A1 MUTATED" "COL22A1 WILD-TYPE" 
       TCGA-IB-7888        TCGA-IB-7889        TCGA-IB-7890        TCGA-IB-7891 
"COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE"   "COL22A1 MUTATED" 
       TCGA-IB-7893        TCGA-IB-7897        TCGA-IB-8126        TCGA-IB-8127 
"COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" 
       TCGA-IB-A5SO        TCGA-IB-A5SP        TCGA-IB-A5SQ        TCGA-IB-A5SS 
"COL22A1 WILD-TYPE"   "COL22A1 MUTATED" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" 
       TCGA-IB-A5ST        TCGA-IB-A6UG        TCGA-LB-A7SX        TCGA-OE-A75W 
"COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" 
       TCGA-PZ-A5RE        TCGA-Q3-A5QY        TCGA-US-A779        TCGA-US-A77E 
"COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" 
       TCGA-US-A77J 
"COL22A1 WILD-TYPE" 
       TCGA-F2-6879        TCGA-F2-6880        TCGA-F2-7273        TCGA-F2-7276 
"COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE"   "COL22A1 MUTATED" "COL22A1 WILD-TYPE" 
       TCGA-F2-A44G        TCGA-F2-A44H        TCGA-FB-A4P5        TCGA-FB-A4P6 
"COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" 
       TCGA-FB-A545        TCGA-FB-A5VM        TCGA-FB-A78T        TCGA-FB-A7DR 
"COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" 
       TCGA-FZ-5920        TCGA-FZ-5922        TCGA-FZ-5923        TCGA-H6-8124 
"COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE"   "COL22A1 MUTATED" 
       TCGA-H6-A45N        TCGA-H8-A6C1        TCGA-HZ-7289        TCGA-HZ-7918 
"COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" 
       TCGA-HZ-7919        TCGA-HZ-7922        TCGA-HZ-7923        TCGA-HZ-7924 
"COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE"   "COL22A1 MUTATED" 
       TCGA-HZ-7925        TCGA-HZ-7926        TCGA-HZ-8001        TCGA-HZ-8002 
"COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" 
       TCGA-HZ-8003        TCGA-HZ-8005        TCGA-HZ-8315        TCGA-HZ-8317 
  "COL22A1 MUTATED" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" 
       TCGA-HZ-8636        TCGA-HZ-8638        TCGA-HZ-A49G        TCGA-HZ-A49H 
"COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" 
       TCGA-HZ-A4BH        TCGA-HZ-A4BK        TCGA-IB-7644        TCGA-IB-7645 
"COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" 
       TCGA-IB-7646        TCGA-IB-7647        TCGA-IB-7649        TCGA-IB-7651 
"COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE"   "COL22A1 MUTATED" 
       TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-7886        TCGA-IB-7887 
"COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE"   "COL22A1 MUTATED" "COL22A1 WILD-TYPE" 
       TCGA-IB-7888        TCGA-IB-7889        TCGA-IB-7890        TCGA-IB-7891 
"COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE"   "COL22A1 MUTATED" 
       TCGA-IB-7893        TCGA-IB-7897        TCGA-IB-8126        TCGA-IB-8127 
"COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" 
       TCGA-IB-A5SO        TCGA-IB-A5SP        TCGA-IB-A5SQ        TCGA-IB-A5SS 
"COL22A1 WILD-TYPE"   "COL22A1 MUTATED" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" 
       TCGA-IB-A5ST        TCGA-IB-A6UG        TCGA-LB-A7SX        TCGA-OE-A75W 
"COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" 
       TCGA-PZ-A5RE        TCGA-Q3-A5QY        TCGA-US-A779        TCGA-US-A77E 
"COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" 
       TCGA-US-A77J 
"COL22A1 WILD-TYPE" 
[1] "hr=" "1.2"
D292V2, continuous
                   vv
clus                STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  COL22A1 MUTATED          0        0         2         6         0        0
  COL22A1 WILD-TYPE        1        4         9        45         2        3
D292V3, multiclass
                   vv
clus                T1+T2 T3+T4
  COL22A1 MUTATED       0     8
  COL22A1 WILD-TYPE     6    58
D292V4, multiclass
       clus
vv      COL22A1 MUTATED COL22A1 WILD-TYPE
  T1+T2               0                 6
  T3+T4               8                58
D292V5, binary
                   cls
clus                 0  1
  COL22A1 MUTATED    2  6
  COL22A1 WILD-TYPE 15 48
[1] "tbl2"
                   cls
clus                [,1] [,2]
  COL22A1 MUTATED      2    6
  COL22A1 WILD-TYPE   15   48
   clus
vv  COL22A1 MUTATED COL22A1 WILD-TYPE
  0               2                15
  1               6                48
                   vv
clus                M0 M1 MX
  COL22A1 MUTATED    6  0  2
  COL22A1 WILD-TYPE 33  3 28
D292V6, multiclass
    clus
vv   COL22A1 MUTATED COL22A1 WILD-TYPE
  M0               6                33
  M1               0                 3
  MX               2                28
D292V7, binary
                   cls
clus                 0  1
  COL22A1 MUTATED    4  4
  COL22A1 WILD-TYPE 32 32
[1] "tbl2"
                   cls
clus                [,1] [,2]
  COL22A1 MUTATED      4    4
  COL22A1 WILD-TYPE   32   32
        clus
vv       COL22A1 MUTATED COL22A1 WILD-TYPE
  FEMALE               4                32
  MALE                 4                32
                   vv
clus                PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  COL22A1 MUTATED                                     8
  COL22A1 WILD-TYPE                                  57
                   vv
clus                PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  COL22A1 MUTATED                                       0
  COL22A1 WILD-TYPE                                     4
                   vv
clus                PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  COL22A1 MUTATED                                                  0
  COL22A1 WILD-TYPE                                                2
D292V8, multiclass
                                                  clus
vv                                                 COL22A1 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                            8
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                          0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA               0
                                                  clus
vv                                                 COL22A1 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                             57
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                            4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                 2
D292V9, continuous
D292V10, continuous
                   vv
clus                R0 R1 RX
  COL22A1 MUTATED    5  3  0
  COL22A1 WILD-TYPE 37 21  2
D292V11, multiclass
    clus
vv   COL22A1 MUTATED COL22A1 WILD-TYPE
  R0               5                37
  R1               3                21
  RX               0                 2
D292V12, continuous

Clustering(293) Variable = RBM43 MUTATION ANALYSIS
D293V1, survival
                 sevent
clus2              0  1
  RBM43 MUTATED    2  1
  RBM43 WILD-TYPE 38 28
  RBM43 MUTATED RBM43 WILD-TYPE 
              3              66 
  RBM43 MUTATED RBM43 WILD-TYPE 
              1              28 
$`RBM43 MUTATED`
TCGA-FB-A78T TCGA-FZ-5922 TCGA-HZ-8001 
        0.03        36.20         0.62 

$`RBM43 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P5 TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A7DR TCGA-FZ-5920 
        0.13        11.93        12.66         2.47         5.46         2.01 
TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7289 TCGA-HZ-7918 
       20.81        12.89         7.66        13.02         7.89         0.92 
TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 
        0.66         0.13         0.26        12.13        11.87         0.26 
TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8636 
        0.79         0.69         3.95         0.92         0.53         0.16 
TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 
        2.99         0.76         0.95         6.38         1.51        11.41 
TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7651 TCGA-IB-7652 
       49.38         4.77        21.90        15.35        19.82        15.65 
TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 
       27.98         4.04         3.62        43.79        15.81        19.66 
TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO 
       16.04         3.85        15.98         0.56        17.16        10.82 
TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX 
        9.86         7.20        15.12         0.26         1.35         4.18 
TCGA-OE-A75W TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
        3.62         8.12        13.68        16.80        14.14        18.67 

  RBM43 MUTATED RBM43 WILD-TYPE 
           0.03            0.13 
  RBM43 MUTATED RBM43 WILD-TYPE 
          36.20           49.38 
  RBM43 MUTATED RBM43 WILD-TYPE 
          0.620           7.775 
[1] "0.0 - 36.2 (0.6)" "0.1 - 49.4 (7.8)"
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"RBM43 WILD-TYPE" "RBM43 WILD-TYPE" "RBM43 WILD-TYPE" "RBM43 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"RBM43 WILD-TYPE" "RBM43 WILD-TYPE" "RBM43 WILD-TYPE" "RBM43 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"RBM43 WILD-TYPE" "RBM43 WILD-TYPE"   "RBM43 MUTATED" "RBM43 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"RBM43 WILD-TYPE"   "RBM43 MUTATED" "RBM43 WILD-TYPE" "RBM43 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"RBM43 WILD-TYPE" "RBM43 WILD-TYPE" "RBM43 WILD-TYPE" "RBM43 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"RBM43 WILD-TYPE" "RBM43 WILD-TYPE" "RBM43 WILD-TYPE" "RBM43 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"RBM43 WILD-TYPE" "RBM43 WILD-TYPE"   "RBM43 MUTATED" "RBM43 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"RBM43 WILD-TYPE" "RBM43 WILD-TYPE" "RBM43 WILD-TYPE" "RBM43 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"RBM43 WILD-TYPE" "RBM43 WILD-TYPE" "RBM43 WILD-TYPE" "RBM43 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"RBM43 WILD-TYPE" "RBM43 WILD-TYPE" "RBM43 WILD-TYPE" "RBM43 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"RBM43 WILD-TYPE" "RBM43 WILD-TYPE" "RBM43 WILD-TYPE" "RBM43 WILD-TYPE" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"RBM43 WILD-TYPE" "RBM43 WILD-TYPE" "RBM43 WILD-TYPE" "RBM43 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"RBM43 WILD-TYPE" "RBM43 WILD-TYPE" "RBM43 WILD-TYPE" "RBM43 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"RBM43 WILD-TYPE" "RBM43 WILD-TYPE" "RBM43 WILD-TYPE" "RBM43 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"RBM43 WILD-TYPE" "RBM43 WILD-TYPE" "RBM43 WILD-TYPE" "RBM43 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"RBM43 WILD-TYPE" "RBM43 WILD-TYPE" "RBM43 WILD-TYPE" "RBM43 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"RBM43 WILD-TYPE" "RBM43 WILD-TYPE" "RBM43 WILD-TYPE" "RBM43 WILD-TYPE" 
     TCGA-US-A77J 
"RBM43 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"RBM43 WILD-TYPE" "RBM43 WILD-TYPE" "RBM43 WILD-TYPE" "RBM43 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"RBM43 WILD-TYPE" "RBM43 WILD-TYPE" "RBM43 WILD-TYPE" "RBM43 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"RBM43 WILD-TYPE" "RBM43 WILD-TYPE"   "RBM43 MUTATED" "RBM43 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"RBM43 WILD-TYPE"   "RBM43 MUTATED" "RBM43 WILD-TYPE" "RBM43 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"RBM43 WILD-TYPE" "RBM43 WILD-TYPE" "RBM43 WILD-TYPE" "RBM43 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"RBM43 WILD-TYPE" "RBM43 WILD-TYPE" "RBM43 WILD-TYPE" "RBM43 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"RBM43 WILD-TYPE" "RBM43 WILD-TYPE"   "RBM43 MUTATED" "RBM43 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"RBM43 WILD-TYPE" "RBM43 WILD-TYPE" "RBM43 WILD-TYPE" "RBM43 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"RBM43 WILD-TYPE" "RBM43 WILD-TYPE" "RBM43 WILD-TYPE" "RBM43 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"RBM43 WILD-TYPE" "RBM43 WILD-TYPE" "RBM43 WILD-TYPE" "RBM43 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"RBM43 WILD-TYPE" "RBM43 WILD-TYPE" "RBM43 WILD-TYPE" "RBM43 WILD-TYPE" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"RBM43 WILD-TYPE" "RBM43 WILD-TYPE" "RBM43 WILD-TYPE" "RBM43 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"RBM43 WILD-TYPE" "RBM43 WILD-TYPE" "RBM43 WILD-TYPE" "RBM43 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"RBM43 WILD-TYPE" "RBM43 WILD-TYPE" "RBM43 WILD-TYPE" "RBM43 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"RBM43 WILD-TYPE" "RBM43 WILD-TYPE" "RBM43 WILD-TYPE" "RBM43 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"RBM43 WILD-TYPE" "RBM43 WILD-TYPE" "RBM43 WILD-TYPE" "RBM43 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"RBM43 WILD-TYPE" "RBM43 WILD-TYPE" "RBM43 WILD-TYPE" "RBM43 WILD-TYPE" 
     TCGA-US-A77J 
"RBM43 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"RBM43 WILD-TYPE" "RBM43 WILD-TYPE" "RBM43 WILD-TYPE" "RBM43 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"RBM43 WILD-TYPE" "RBM43 WILD-TYPE" "RBM43 WILD-TYPE" "RBM43 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"RBM43 WILD-TYPE" "RBM43 WILD-TYPE"   "RBM43 MUTATED" "RBM43 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"RBM43 WILD-TYPE"   "RBM43 MUTATED" "RBM43 WILD-TYPE" "RBM43 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"RBM43 WILD-TYPE" "RBM43 WILD-TYPE" "RBM43 WILD-TYPE" "RBM43 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"RBM43 WILD-TYPE" "RBM43 WILD-TYPE" "RBM43 WILD-TYPE" "RBM43 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"RBM43 WILD-TYPE" "RBM43 WILD-TYPE"   "RBM43 MUTATED" "RBM43 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"RBM43 WILD-TYPE" "RBM43 WILD-TYPE" "RBM43 WILD-TYPE" "RBM43 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"RBM43 WILD-TYPE" "RBM43 WILD-TYPE" "RBM43 WILD-TYPE" "RBM43 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"RBM43 WILD-TYPE" "RBM43 WILD-TYPE" "RBM43 WILD-TYPE" "RBM43 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"RBM43 WILD-TYPE" "RBM43 WILD-TYPE" "RBM43 WILD-TYPE" "RBM43 WILD-TYPE" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"RBM43 WILD-TYPE" "RBM43 WILD-TYPE" "RBM43 WILD-TYPE" "RBM43 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"RBM43 WILD-TYPE" "RBM43 WILD-TYPE" "RBM43 WILD-TYPE" "RBM43 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"RBM43 WILD-TYPE" "RBM43 WILD-TYPE" "RBM43 WILD-TYPE" "RBM43 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"RBM43 WILD-TYPE" "RBM43 WILD-TYPE" "RBM43 WILD-TYPE" "RBM43 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"RBM43 WILD-TYPE" "RBM43 WILD-TYPE" "RBM43 WILD-TYPE" "RBM43 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"RBM43 WILD-TYPE" "RBM43 WILD-TYPE" "RBM43 WILD-TYPE" "RBM43 WILD-TYPE" 
     TCGA-US-A77J 
"RBM43 WILD-TYPE" 
[1] "hr=" "2"  
D293V2, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  RBM43 MUTATED          0        0         1         2         1        0
  RBM43 WILD-TYPE        1        4        10        49         1        3
D293V3, multiclass
                 vv
clus              T1+T2 T3+T4
  RBM43 MUTATED       0     4
  RBM43 WILD-TYPE     6    62
D293V4, multiclass
       clus
vv      RBM43 MUTATED RBM43 WILD-TYPE
  T1+T2             0               6
  T3+T4             4              62
D293V5, binary
                 cls
clus               0  1
  RBM43 MUTATED    2  2
  RBM43 WILD-TYPE 15 52
[1] "tbl2"
                 cls
clus              [,1] [,2]
  RBM43 MUTATED      2    2
  RBM43 WILD-TYPE   15   52
   clus
vv  RBM43 MUTATED RBM43 WILD-TYPE
  0             2              15
  1             2              52
                 vv
clus              M0 M1 MX
  RBM43 MUTATED    2  0  2
  RBM43 WILD-TYPE 37  3 28
D293V6, multiclass
    clus
vv   RBM43 MUTATED RBM43 WILD-TYPE
  M0             2              37
  M1             0               3
  MX             2              28
D293V7, binary
                 cls
clus               0  1
  RBM43 MUTATED    1  3
  RBM43 WILD-TYPE 35 33
[1] "tbl2"
                 cls
clus              [,1] [,2]
  RBM43 MUTATED      1    3
  RBM43 WILD-TYPE   35   33
        clus
vv       RBM43 MUTATED RBM43 WILD-TYPE
  FEMALE             1              35
  MALE               3              33
                 vv
clus              PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  RBM43 MUTATED                                     4
  RBM43 WILD-TYPE                                  61
                 vv
clus              PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  RBM43 MUTATED                                       0
  RBM43 WILD-TYPE                                     4
                 vv
clus              PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  RBM43 MUTATED                                                  0
  RBM43 WILD-TYPE                                                2
D293V8, multiclass
                                                  clus
vv                                                 RBM43 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                          4
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                        0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA             0
                                                  clus
vv                                                 RBM43 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                           61
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                          4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA               2
D293V9, continuous
[1] "Remove cluster labels:" "RBM43 MUTATED"         
clus
  RBM43 MUTATED RBM43 WILD-TYPE 
              1              21 
     TCGA-F2-6880      TCGA-FB-A4P5      TCGA-FB-A4P6      TCGA-FB-A5VM 
"RBM43 WILD-TYPE" "RBM43 WILD-TYPE" "RBM43 WILD-TYPE" "RBM43 WILD-TYPE" 
     TCGA-FB-A7DR      TCGA-H6-8124      TCGA-H6-A45N      TCGA-H8-A6C1 
"RBM43 WILD-TYPE" "RBM43 WILD-TYPE" "RBM43 WILD-TYPE" "RBM43 WILD-TYPE" 
     TCGA-IB-7644      TCGA-IB-7649      TCGA-IB-7651      TCGA-IB-7885 
"RBM43 WILD-TYPE" "RBM43 WILD-TYPE" "RBM43 WILD-TYPE" "RBM43 WILD-TYPE" 
     TCGA-IB-7886      TCGA-IB-7887      TCGA-IB-7891      TCGA-IB-8126 
"RBM43 WILD-TYPE" "RBM43 WILD-TYPE" "RBM43 WILD-TYPE" "RBM43 WILD-TYPE" 
     TCGA-IB-8127      TCGA-IB-A5SS      TCGA-IB-A6UG      TCGA-LB-A7SX 
"RBM43 WILD-TYPE" "RBM43 WILD-TYPE" "RBM43 WILD-TYPE" "RBM43 WILD-TYPE" 
     TCGA-OE-A75W 
"RBM43 WILD-TYPE" 
D293V10, continuous
[1] "Remove cluster labels:" "RBM43 MUTATED"         
clus
  RBM43 MUTATED RBM43 WILD-TYPE 
              1              18 
     TCGA-FB-A4P5      TCGA-FB-A4P6      TCGA-FB-A5VM      TCGA-FB-A7DR 
"RBM43 WILD-TYPE" "RBM43 WILD-TYPE" "RBM43 WILD-TYPE" "RBM43 WILD-TYPE" 
     TCGA-H6-8124      TCGA-H8-A6C1      TCGA-IB-7644      TCGA-IB-7649 
"RBM43 WILD-TYPE" "RBM43 WILD-TYPE" "RBM43 WILD-TYPE" "RBM43 WILD-TYPE" 
     TCGA-IB-7651      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7891 
"RBM43 WILD-TYPE" "RBM43 WILD-TYPE" "RBM43 WILD-TYPE" "RBM43 WILD-TYPE" 
     TCGA-IB-8126      TCGA-IB-8127      TCGA-IB-A5SS      TCGA-IB-A6UG 
"RBM43 WILD-TYPE" "RBM43 WILD-TYPE" "RBM43 WILD-TYPE" "RBM43 WILD-TYPE" 
     TCGA-LB-A7SX      TCGA-OE-A75W 
"RBM43 WILD-TYPE" "RBM43 WILD-TYPE" 
                 vv
clus              R0 R1 RX
  RBM43 MUTATED    3  1  0
  RBM43 WILD-TYPE 39 23  2
D293V11, multiclass
    clus
vv   RBM43 MUTATED RBM43 WILD-TYPE
  R0             3              39
  R1             1              23
  RX             0               2
D293V12, continuous

Clustering(294) Variable = ZNF880 MUTATION ANALYSIS
D294V1, survival
                  sevent
clus2               0  1
  ZNF880 MUTATED    2  2
  ZNF880 WILD-TYPE 38 27
  ZNF880 MUTATED ZNF880 WILD-TYPE 
               4               65 
  ZNF880 MUTATED ZNF880 WILD-TYPE 
               2               27 
$`ZNF880 MUTATED`
TCGA-HZ-7919 TCGA-HZ-8002 TCGA-IB-7647 TCGA-IB-7887 
        0.66         0.79        21.90         3.62 

$`ZNF880 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P5 TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR 
        0.13        11.93        12.66         2.47         0.03         5.46 
TCGA-FZ-5920 TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 
        2.01        36.20        20.81        12.89         7.66        13.02 
TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 
        7.89         0.92         0.13         0.26        12.13        11.87 
TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 
        0.26         0.62         0.69         3.95         0.92         0.53 
TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK 
        0.16         2.99         0.76         0.95         6.38         1.51 
TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7649 TCGA-IB-7651 TCGA-IB-7652 
       11.41        49.38         4.77        15.35        19.82        15.65 
TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 
       27.98         4.04        43.79        15.81        19.66        16.04 
TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP 
        3.85        15.98         0.56        17.16        10.82         9.86 
TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W 
        7.20        15.12         0.26         1.35         4.18         3.62 
TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
        8.12        13.68        16.80        14.14        18.67 

  ZNF880 MUTATED ZNF880 WILD-TYPE 
            0.66             0.03 
  ZNF880 MUTATED ZNF880 WILD-TYPE 
           21.90            49.38 
  ZNF880 MUTATED ZNF880 WILD-TYPE 
           2.205            7.890 
[1] "0.7 - 21.9 (2.2)" "0.0 - 49.4 (7.9)"
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
"ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
"ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
"ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
  "ZNF880 MUTATED" "ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE"   "ZNF880 MUTATED" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
"ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
"ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
"ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
"ZNF880 WILD-TYPE"   "ZNF880 MUTATED" "ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
"ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE"   "ZNF880 MUTATED" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
"ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
"ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
"ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE" 
      TCGA-US-A77J 
"ZNF880 WILD-TYPE" 
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
"ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
"ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
"ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
  "ZNF880 MUTATED" "ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE"   "ZNF880 MUTATED" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
"ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
"ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
"ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
"ZNF880 WILD-TYPE"   "ZNF880 MUTATED" "ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
"ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE"   "ZNF880 MUTATED" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
"ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
"ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
"ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE" 
      TCGA-US-A77J 
"ZNF880 WILD-TYPE" 
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
"ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
"ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
"ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
  "ZNF880 MUTATED" "ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE"   "ZNF880 MUTATED" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
"ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
"ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
"ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
"ZNF880 WILD-TYPE"   "ZNF880 MUTATED" "ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
"ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE"   "ZNF880 MUTATED" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
"ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
"ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
"ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE" 
      TCGA-US-A77J 
"ZNF880 WILD-TYPE" 
[1] "hr=" "1.3"
D294V2, continuous
                  vv
clus               STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  ZNF880 MUTATED          0        0         0         4         0        0
  ZNF880 WILD-TYPE        1        4        11        47         2        3
D294V3, multiclass
                  vv
clus               T1+T2 T3+T4
  ZNF880 MUTATED       0     4
  ZNF880 WILD-TYPE     6    62
D294V4, multiclass
       clus
vv      ZNF880 MUTATED ZNF880 WILD-TYPE
  T1+T2              0                6
  T3+T4              4               62
D294V5, binary
                  cls
clus                0  1
  ZNF880 MUTATED    0  4
  ZNF880 WILD-TYPE 17 50
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ZNF880 MUTATED      0    4
  ZNF880 WILD-TYPE   17   50
   clus
vv  ZNF880 MUTATED ZNF880 WILD-TYPE
  0              0               17
  1              4               50
                  vv
clus               M0 M1 MX
  ZNF880 MUTATED    3  0  1
  ZNF880 WILD-TYPE 36  3 29
D294V6, multiclass
    clus
vv   ZNF880 MUTATED ZNF880 WILD-TYPE
  M0              3               36
  M1              0                3
  MX              1               29
D294V7, binary
                  cls
clus                0  1
  ZNF880 MUTATED    3  1
  ZNF880 WILD-TYPE 33 35
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ZNF880 MUTATED      3    1
  ZNF880 WILD-TYPE   33   35
        clus
vv       ZNF880 MUTATED ZNF880 WILD-TYPE
  FEMALE              3               33
  MALE                1               35
                  vv
clus               PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  ZNF880 MUTATED                                     4
  ZNF880 WILD-TYPE                                  61
                  vv
clus               PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  ZNF880 MUTATED                                       0
  ZNF880 WILD-TYPE                                     4
                  vv
clus               PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  ZNF880 MUTATED                                                  0
  ZNF880 WILD-TYPE                                                2
D294V8, multiclass
                                                  clus
vv                                                 ZNF880 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                           4
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                         0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA              0
                                                  clus
vv                                                 ZNF880 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                            61
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                           4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                2
D294V9, continuous
[1] "Remove cluster labels:" "ZNF880 MUTATED"        
clus
  ZNF880 MUTATED ZNF880 WILD-TYPE 
               1               21 
      TCGA-F2-6880       TCGA-FB-A4P5       TCGA-FB-A4P6       TCGA-FB-A5VM 
"ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE" 
      TCGA-FB-A78T       TCGA-FB-A7DR       TCGA-H6-8124       TCGA-H6-A45N 
"ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE" 
      TCGA-H8-A6C1       TCGA-IB-7644       TCGA-IB-7649       TCGA-IB-7651 
"ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE" 
      TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7891       TCGA-IB-8126 
"ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE" 
      TCGA-IB-8127       TCGA-IB-A5SS       TCGA-IB-A6UG       TCGA-LB-A7SX 
"ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE" "ZNF880 WILD-TYPE" 
      TCGA-OE-A75W 
"ZNF880 WILD-TYPE" 
D294V10, continuous
                  vv
clus               R0 R1 RX
  ZNF880 MUTATED    1  3  0
  ZNF880 WILD-TYPE 41 21  2
D294V11, multiclass
    clus
vv   ZNF880 MUTATED ZNF880 WILD-TYPE
  R0              1               41
  R1              3               21
  RX              0                2
D294V12, continuous

Clustering(295) Variable = ACE MUTATION ANALYSIS
D295V1, survival
               sevent
clus2            0  1
  ACE MUTATED    2  4
  ACE WILD-TYPE 38 25
  ACE MUTATED ACE WILD-TYPE 
            6            63 
  ACE MUTATED ACE WILD-TYPE 
            4            25 
$`ACE MUTATED`
TCGA-HZ-8005 TCGA-HZ-A4BK TCGA-IB-7646 TCGA-IB-7651 TCGA-IB-7885 TCGA-IB-7893 
        3.95         1.51         4.77        19.82        27.98         3.85 

$`ACE WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P5 TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR 
        0.13        11.93        12.66         2.47         0.03         5.46 
TCGA-FZ-5920 TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 
        2.01        36.20        20.81        12.89         7.66        13.02 
TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 
        7.89         0.92         0.66         0.13         0.26        12.13 
TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8315 
       11.87         0.26         0.62         0.79         0.69         0.92 
TCGA-HZ-8317 TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH 
        0.53         0.16         2.99         0.76         0.95         6.38 
TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7652 TCGA-IB-7886 
       11.41        49.38        21.90        15.35        15.65         4.04 
TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-7897 
        3.62        43.79        15.81        19.66        16.04        15.98 
TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS 
        0.56        17.16        10.82         9.86         7.20        15.12 
TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W TCGA-PZ-A5RE TCGA-Q3-A5QY 
        0.26         1.35         4.18         3.62         8.12        13.68 
TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
       16.80        14.14        18.67 

  ACE MUTATED ACE WILD-TYPE 
         1.51          0.03 
  ACE MUTATED ACE WILD-TYPE 
        27.98         49.38 
  ACE MUTATED ACE WILD-TYPE 
         4.36          7.89 
[1] "1.5 - 28.0 (4.4)" "0.0 - 49.4 (7.9)"
   TCGA-F2-6879    TCGA-F2-6880    TCGA-F2-7273    TCGA-F2-7276    TCGA-F2-A44G 
"ACE WILD-TYPE" "ACE WILD-TYPE" "ACE WILD-TYPE" "ACE WILD-TYPE" "ACE WILD-TYPE" 
   TCGA-F2-A44H    TCGA-FB-A4P5    TCGA-FB-A4P6    TCGA-FB-A545    TCGA-FB-A5VM 
"ACE WILD-TYPE" "ACE WILD-TYPE" "ACE WILD-TYPE" "ACE WILD-TYPE" "ACE WILD-TYPE" 
   TCGA-FB-A78T    TCGA-FB-A7DR    TCGA-FZ-5920    TCGA-FZ-5922    TCGA-FZ-5923 
"ACE WILD-TYPE" "ACE WILD-TYPE" "ACE WILD-TYPE" "ACE WILD-TYPE" "ACE WILD-TYPE" 
   TCGA-H6-8124    TCGA-H6-A45N    TCGA-H8-A6C1    TCGA-HZ-7289    TCGA-HZ-7918 
"ACE WILD-TYPE" "ACE WILD-TYPE" "ACE WILD-TYPE" "ACE WILD-TYPE" "ACE WILD-TYPE" 
   TCGA-HZ-7919    TCGA-HZ-7922    TCGA-HZ-7923    TCGA-HZ-7924    TCGA-HZ-7925 
"ACE WILD-TYPE" "ACE WILD-TYPE" "ACE WILD-TYPE" "ACE WILD-TYPE" "ACE WILD-TYPE" 
   TCGA-HZ-7926    TCGA-HZ-8001    TCGA-HZ-8002    TCGA-HZ-8003    TCGA-HZ-8005 
"ACE WILD-TYPE" "ACE WILD-TYPE" "ACE WILD-TYPE" "ACE WILD-TYPE"   "ACE MUTATED" 
   TCGA-HZ-8315    TCGA-HZ-8317    TCGA-HZ-8636    TCGA-HZ-8638    TCGA-HZ-A49G 
"ACE WILD-TYPE" "ACE WILD-TYPE" "ACE WILD-TYPE" "ACE WILD-TYPE" "ACE WILD-TYPE" 
   TCGA-HZ-A49H    TCGA-HZ-A4BH    TCGA-HZ-A4BK    TCGA-IB-7644    TCGA-IB-7645 
"ACE WILD-TYPE" "ACE WILD-TYPE"   "ACE MUTATED" "ACE WILD-TYPE" "ACE WILD-TYPE" 
   TCGA-IB-7646    TCGA-IB-7647    TCGA-IB-7649    TCGA-IB-7651    TCGA-IB-7652 
  "ACE MUTATED" "ACE WILD-TYPE" "ACE WILD-TYPE"   "ACE MUTATED" "ACE WILD-TYPE" 
   TCGA-IB-7885    TCGA-IB-7886    TCGA-IB-7887    TCGA-IB-7888    TCGA-IB-7889 
  "ACE MUTATED" "ACE WILD-TYPE" "ACE WILD-TYPE" "ACE WILD-TYPE" "ACE WILD-TYPE" 
   TCGA-IB-7890    TCGA-IB-7891    TCGA-IB-7893    TCGA-IB-7897    TCGA-IB-8126 
"ACE WILD-TYPE" "ACE WILD-TYPE"   "ACE MUTATED" "ACE WILD-TYPE" "ACE WILD-TYPE" 
   TCGA-IB-8127    TCGA-IB-A5SO    TCGA-IB-A5SP    TCGA-IB-A5SQ    TCGA-IB-A5SS 
"ACE WILD-TYPE" "ACE WILD-TYPE" "ACE WILD-TYPE" "ACE WILD-TYPE" "ACE WILD-TYPE" 
   TCGA-IB-A5ST    TCGA-IB-A6UG    TCGA-LB-A7SX    TCGA-OE-A75W    TCGA-PZ-A5RE 
"ACE WILD-TYPE" "ACE WILD-TYPE" "ACE WILD-TYPE" "ACE WILD-TYPE" "ACE WILD-TYPE" 
   TCGA-Q3-A5QY    TCGA-US-A779    TCGA-US-A77E    TCGA-US-A77J 
"ACE WILD-TYPE" "ACE WILD-TYPE" "ACE WILD-TYPE" "ACE WILD-TYPE" 
   TCGA-F2-6879    TCGA-F2-6880    TCGA-F2-7273    TCGA-F2-7276    TCGA-F2-A44G 
"ACE WILD-TYPE" "ACE WILD-TYPE" "ACE WILD-TYPE" "ACE WILD-TYPE" "ACE WILD-TYPE" 
   TCGA-F2-A44H    TCGA-FB-A4P5    TCGA-FB-A4P6    TCGA-FB-A545    TCGA-FB-A5VM 
"ACE WILD-TYPE" "ACE WILD-TYPE" "ACE WILD-TYPE" "ACE WILD-TYPE" "ACE WILD-TYPE" 
   TCGA-FB-A78T    TCGA-FB-A7DR    TCGA-FZ-5920    TCGA-FZ-5922    TCGA-FZ-5923 
"ACE WILD-TYPE" "ACE WILD-TYPE" "ACE WILD-TYPE" "ACE WILD-TYPE" "ACE WILD-TYPE" 
   TCGA-H6-8124    TCGA-H6-A45N    TCGA-H8-A6C1    TCGA-HZ-7289    TCGA-HZ-7918 
"ACE WILD-TYPE" "ACE WILD-TYPE" "ACE WILD-TYPE" "ACE WILD-TYPE" "ACE WILD-TYPE" 
   TCGA-HZ-7919    TCGA-HZ-7922    TCGA-HZ-7923    TCGA-HZ-7924    TCGA-HZ-7925 
"ACE WILD-TYPE" "ACE WILD-TYPE" "ACE WILD-TYPE" "ACE WILD-TYPE" "ACE WILD-TYPE" 
   TCGA-HZ-7926    TCGA-HZ-8001    TCGA-HZ-8002    TCGA-HZ-8003    TCGA-HZ-8005 
"ACE WILD-TYPE" "ACE WILD-TYPE" "ACE WILD-TYPE" "ACE WILD-TYPE"   "ACE MUTATED" 
   TCGA-HZ-8315    TCGA-HZ-8317    TCGA-HZ-8636    TCGA-HZ-8638    TCGA-HZ-A49G 
"ACE WILD-TYPE" "ACE WILD-TYPE" "ACE WILD-TYPE" "ACE WILD-TYPE" "ACE WILD-TYPE" 
   TCGA-HZ-A49H    TCGA-HZ-A4BH    TCGA-HZ-A4BK    TCGA-IB-7644    TCGA-IB-7645 
"ACE WILD-TYPE" "ACE WILD-TYPE"   "ACE MUTATED" "ACE WILD-TYPE" "ACE WILD-TYPE" 
   TCGA-IB-7646    TCGA-IB-7647    TCGA-IB-7649    TCGA-IB-7651    TCGA-IB-7652 
  "ACE MUTATED" "ACE WILD-TYPE" "ACE WILD-TYPE"   "ACE MUTATED" "ACE WILD-TYPE" 
   TCGA-IB-7885    TCGA-IB-7886    TCGA-IB-7887    TCGA-IB-7888    TCGA-IB-7889 
  "ACE MUTATED" "ACE WILD-TYPE" "ACE WILD-TYPE" "ACE WILD-TYPE" "ACE WILD-TYPE" 
   TCGA-IB-7890    TCGA-IB-7891    TCGA-IB-7893    TCGA-IB-7897    TCGA-IB-8126 
"ACE WILD-TYPE" "ACE WILD-TYPE"   "ACE MUTATED" "ACE WILD-TYPE" "ACE WILD-TYPE" 
   TCGA-IB-8127    TCGA-IB-A5SO    TCGA-IB-A5SP    TCGA-IB-A5SQ    TCGA-IB-A5SS 
"ACE WILD-TYPE" "ACE WILD-TYPE" "ACE WILD-TYPE" "ACE WILD-TYPE" "ACE WILD-TYPE" 
   TCGA-IB-A5ST    TCGA-IB-A6UG    TCGA-LB-A7SX    TCGA-OE-A75W    TCGA-PZ-A5RE 
"ACE WILD-TYPE" "ACE WILD-TYPE" "ACE WILD-TYPE" "ACE WILD-TYPE" "ACE WILD-TYPE" 
   TCGA-Q3-A5QY    TCGA-US-A779    TCGA-US-A77E    TCGA-US-A77J 
"ACE WILD-TYPE" "ACE WILD-TYPE" "ACE WILD-TYPE" "ACE WILD-TYPE" 
   TCGA-F2-6879    TCGA-F2-6880    TCGA-F2-7273    TCGA-F2-7276    TCGA-F2-A44G 
"ACE WILD-TYPE" "ACE WILD-TYPE" "ACE WILD-TYPE" "ACE WILD-TYPE" "ACE WILD-TYPE" 
   TCGA-F2-A44H    TCGA-FB-A4P5    TCGA-FB-A4P6    TCGA-FB-A545    TCGA-FB-A5VM 
"ACE WILD-TYPE" "ACE WILD-TYPE" "ACE WILD-TYPE" "ACE WILD-TYPE" "ACE WILD-TYPE" 
   TCGA-FB-A78T    TCGA-FB-A7DR    TCGA-FZ-5920    TCGA-FZ-5922    TCGA-FZ-5923 
"ACE WILD-TYPE" "ACE WILD-TYPE" "ACE WILD-TYPE" "ACE WILD-TYPE" "ACE WILD-TYPE" 
   TCGA-H6-8124    TCGA-H6-A45N    TCGA-H8-A6C1    TCGA-HZ-7289    TCGA-HZ-7918 
"ACE WILD-TYPE" "ACE WILD-TYPE" "ACE WILD-TYPE" "ACE WILD-TYPE" "ACE WILD-TYPE" 
   TCGA-HZ-7919    TCGA-HZ-7922    TCGA-HZ-7923    TCGA-HZ-7924    TCGA-HZ-7925 
"ACE WILD-TYPE" "ACE WILD-TYPE" "ACE WILD-TYPE" "ACE WILD-TYPE" "ACE WILD-TYPE" 
   TCGA-HZ-7926    TCGA-HZ-8001    TCGA-HZ-8002    TCGA-HZ-8003    TCGA-HZ-8005 
"ACE WILD-TYPE" "ACE WILD-TYPE" "ACE WILD-TYPE" "ACE WILD-TYPE"   "ACE MUTATED" 
   TCGA-HZ-8315    TCGA-HZ-8317    TCGA-HZ-8636    TCGA-HZ-8638    TCGA-HZ-A49G 
"ACE WILD-TYPE" "ACE WILD-TYPE" "ACE WILD-TYPE" "ACE WILD-TYPE" "ACE WILD-TYPE" 
   TCGA-HZ-A49H    TCGA-HZ-A4BH    TCGA-HZ-A4BK    TCGA-IB-7644    TCGA-IB-7645 
"ACE WILD-TYPE" "ACE WILD-TYPE"   "ACE MUTATED" "ACE WILD-TYPE" "ACE WILD-TYPE" 
   TCGA-IB-7646    TCGA-IB-7647    TCGA-IB-7649    TCGA-IB-7651    TCGA-IB-7652 
  "ACE MUTATED" "ACE WILD-TYPE" "ACE WILD-TYPE"   "ACE MUTATED" "ACE WILD-TYPE" 
   TCGA-IB-7885    TCGA-IB-7886    TCGA-IB-7887    TCGA-IB-7888    TCGA-IB-7889 
  "ACE MUTATED" "ACE WILD-TYPE" "ACE WILD-TYPE" "ACE WILD-TYPE" "ACE WILD-TYPE" 
   TCGA-IB-7890    TCGA-IB-7891    TCGA-IB-7893    TCGA-IB-7897    TCGA-IB-8126 
"ACE WILD-TYPE" "ACE WILD-TYPE"   "ACE MUTATED" "ACE WILD-TYPE" "ACE WILD-TYPE" 
   TCGA-IB-8127    TCGA-IB-A5SO    TCGA-IB-A5SP    TCGA-IB-A5SQ    TCGA-IB-A5SS 
"ACE WILD-TYPE" "ACE WILD-TYPE" "ACE WILD-TYPE" "ACE WILD-TYPE" "ACE WILD-TYPE" 
   TCGA-IB-A5ST    TCGA-IB-A6UG    TCGA-LB-A7SX    TCGA-OE-A75W    TCGA-PZ-A5RE 
"ACE WILD-TYPE" "ACE WILD-TYPE" "ACE WILD-TYPE" "ACE WILD-TYPE" "ACE WILD-TYPE" 
   TCGA-Q3-A5QY    TCGA-US-A779    TCGA-US-A77E    TCGA-US-A77J 
"ACE WILD-TYPE" "ACE WILD-TYPE" "ACE WILD-TYPE" "ACE WILD-TYPE" 
[1] "hr=" "1.4"
D295V2, continuous
               vv
clus            STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  ACE MUTATED          0        0         1         5         0        0
  ACE WILD-TYPE        1        4        10        46         2        3
D295V3, multiclass
               vv
clus            T1+T2 T3+T4
  ACE MUTATED       0     6
  ACE WILD-TYPE     6    60
D295V4, multiclass
       clus
vv      ACE MUTATED ACE WILD-TYPE
  T1+T2           0             6
  T3+T4           6            60
D295V5, binary
               cls
clus             0  1
  ACE MUTATED    1  5
  ACE WILD-TYPE 16 49
[1] "tbl2"
               cls
clus            [,1] [,2]
  ACE MUTATED      1    5
  ACE WILD-TYPE   16   49
   clus
vv  ACE MUTATED ACE WILD-TYPE
  0           1            16
  1           5            49
               vv
clus            M0 M1 MX
  ACE MUTATED    4  0  2
  ACE WILD-TYPE 35  3 28
D295V6, multiclass
    clus
vv   ACE MUTATED ACE WILD-TYPE
  M0           4            35
  M1           0             3
  MX           2            28
D295V7, binary
               cls
clus             0  1
  ACE MUTATED    2  4
  ACE WILD-TYPE 34 32
[1] "tbl2"
               cls
clus            [,1] [,2]
  ACE MUTATED      2    4
  ACE WILD-TYPE   34   32
        clus
vv       ACE MUTATED ACE WILD-TYPE
  FEMALE           2            34
  MALE             4            32
               vv
clus            PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  ACE MUTATED                                     5
  ACE WILD-TYPE                                  60
               vv
clus            PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  ACE MUTATED                                       1
  ACE WILD-TYPE                                     3
               vv
clus            PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  ACE MUTATED                                                  0
  ACE WILD-TYPE                                                2
D295V8, multiclass
                                                  clus
vv                                                 ACE MUTATED ACE WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                        5            60
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                      1             3
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA           0             2
D295V9, continuous
[1] "Remove cluster labels:" "ACE MUTATED"           
clus
  ACE MUTATED ACE WILD-TYPE 
            2            20 
   TCGA-F2-6880    TCGA-FB-A4P5    TCGA-FB-A4P6    TCGA-FB-A5VM    TCGA-FB-A78T 
"ACE WILD-TYPE" "ACE WILD-TYPE" "ACE WILD-TYPE" "ACE WILD-TYPE" "ACE WILD-TYPE" 
   TCGA-FB-A7DR    TCGA-H6-8124    TCGA-H6-A45N    TCGA-H8-A6C1    TCGA-IB-7644 
"ACE WILD-TYPE" "ACE WILD-TYPE" "ACE WILD-TYPE" "ACE WILD-TYPE" "ACE WILD-TYPE" 
   TCGA-IB-7649    TCGA-IB-7886    TCGA-IB-7887    TCGA-IB-7891    TCGA-IB-8126 
"ACE WILD-TYPE" "ACE WILD-TYPE" "ACE WILD-TYPE" "ACE WILD-TYPE" "ACE WILD-TYPE" 
   TCGA-IB-8127    TCGA-IB-A5SS    TCGA-IB-A6UG    TCGA-LB-A7SX    TCGA-OE-A75W 
"ACE WILD-TYPE" "ACE WILD-TYPE" "ACE WILD-TYPE" "ACE WILD-TYPE" "ACE WILD-TYPE" 
D295V10, continuous
[1] "Remove cluster labels:" "ACE MUTATED"           
clus
  ACE MUTATED ACE WILD-TYPE 
            2            17 
   TCGA-FB-A4P5    TCGA-FB-A4P6    TCGA-FB-A5VM    TCGA-FB-A78T    TCGA-FB-A7DR 
"ACE WILD-TYPE" "ACE WILD-TYPE" "ACE WILD-TYPE" "ACE WILD-TYPE" "ACE WILD-TYPE" 
   TCGA-H6-8124    TCGA-H8-A6C1    TCGA-IB-7644    TCGA-IB-7649    TCGA-IB-7886 
"ACE WILD-TYPE" "ACE WILD-TYPE" "ACE WILD-TYPE" "ACE WILD-TYPE" "ACE WILD-TYPE" 
   TCGA-IB-7891    TCGA-IB-8126    TCGA-IB-8127    TCGA-IB-A5SS    TCGA-IB-A6UG 
"ACE WILD-TYPE" "ACE WILD-TYPE" "ACE WILD-TYPE" "ACE WILD-TYPE" "ACE WILD-TYPE" 
   TCGA-LB-A7SX    TCGA-OE-A75W 
"ACE WILD-TYPE" "ACE WILD-TYPE" 
               vv
clus            R0 R1 RX
  ACE MUTATED    3  3  0
  ACE WILD-TYPE 39 21  2
D295V11, multiclass
    clus
vv   ACE MUTATED ACE WILD-TYPE
  R0           3            39
  R1           3            21
  RX           0             2
D295V12, continuous

Clustering(296) Variable = CDK8 MUTATION ANALYSIS
D296V1, survival
                sevent
clus2             0  1
  CDK8 MUTATED    3  2
  CDK8 WILD-TYPE 37 27
  CDK8 MUTATED CDK8 WILD-TYPE 
             5             64 
  CDK8 MUTATED CDK8 WILD-TYPE 
             2             27 
$`CDK8 MUTATED`
TCGA-H6-8124 TCGA-HZ-8001 TCGA-HZ-A4BK TCGA-IB-7651 TCGA-IB-7893 
       12.89         0.62         1.51        19.82         3.85 

$`CDK8 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P5 TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR 
        0.13        11.93        12.66         2.47         0.03         5.46 
TCGA-FZ-5920 TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7289 
        2.01        36.20        20.81         7.66        13.02         7.89 
TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 
        0.92         0.66         0.13         0.26        12.13        11.87 
TCGA-HZ-7926 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 
        0.26         0.79         0.69         3.95         0.92         0.53 
TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-IB-7644 
        0.16         2.99         0.76         0.95         6.38        11.41 
TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7652 TCGA-IB-7885 
       49.38         4.77        21.90        15.35        15.65        27.98 
TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 
        4.04         3.62        43.79        15.81        19.66        16.04 
TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ 
       15.98         0.56        17.16        10.82         9.86         7.20 
TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W TCGA-PZ-A5RE 
       15.12         0.26         1.35         4.18         3.62         8.12 
TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
       13.68        16.80        14.14        18.67 

  CDK8 MUTATED CDK8 WILD-TYPE 
          0.62           0.03 
  CDK8 MUTATED CDK8 WILD-TYPE 
         19.82          49.38 
  CDK8 MUTATED CDK8 WILD-TYPE 
         3.850          7.775 
[1] "0.6 - 19.8 (3.9)" "0.0 - 49.4 (7.8)"
    TCGA-F2-6879     TCGA-F2-6880     TCGA-F2-7273     TCGA-F2-7276 
"CDK8 WILD-TYPE" "CDK8 WILD-TYPE" "CDK8 WILD-TYPE" "CDK8 WILD-TYPE" 
    TCGA-F2-A44G     TCGA-F2-A44H     TCGA-FB-A4P5     TCGA-FB-A4P6 
"CDK8 WILD-TYPE" "CDK8 WILD-TYPE" "CDK8 WILD-TYPE" "CDK8 WILD-TYPE" 
    TCGA-FB-A545     TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-FB-A7DR 
"CDK8 WILD-TYPE" "CDK8 WILD-TYPE" "CDK8 WILD-TYPE" "CDK8 WILD-TYPE" 
    TCGA-FZ-5920     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-H6-8124 
"CDK8 WILD-TYPE" "CDK8 WILD-TYPE" "CDK8 WILD-TYPE"   "CDK8 MUTATED" 
    TCGA-H6-A45N     TCGA-H8-A6C1     TCGA-HZ-7289     TCGA-HZ-7918 
"CDK8 WILD-TYPE" "CDK8 WILD-TYPE" "CDK8 WILD-TYPE" "CDK8 WILD-TYPE" 
    TCGA-HZ-7919     TCGA-HZ-7922     TCGA-HZ-7923     TCGA-HZ-7924 
"CDK8 WILD-TYPE" "CDK8 WILD-TYPE" "CDK8 WILD-TYPE" "CDK8 WILD-TYPE" 
    TCGA-HZ-7925     TCGA-HZ-7926     TCGA-HZ-8001     TCGA-HZ-8002 
"CDK8 WILD-TYPE" "CDK8 WILD-TYPE"   "CDK8 MUTATED" "CDK8 WILD-TYPE" 
    TCGA-HZ-8003     TCGA-HZ-8005     TCGA-HZ-8315     TCGA-HZ-8317 
"CDK8 WILD-TYPE" "CDK8 WILD-TYPE" "CDK8 WILD-TYPE" "CDK8 WILD-TYPE" 
    TCGA-HZ-8636     TCGA-HZ-8638     TCGA-HZ-A49G     TCGA-HZ-A49H 
"CDK8 WILD-TYPE" "CDK8 WILD-TYPE" "CDK8 WILD-TYPE" "CDK8 WILD-TYPE" 
    TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-IB-7644     TCGA-IB-7645 
"CDK8 WILD-TYPE"   "CDK8 MUTATED" "CDK8 WILD-TYPE" "CDK8 WILD-TYPE" 
    TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7651 
"CDK8 WILD-TYPE" "CDK8 WILD-TYPE" "CDK8 WILD-TYPE"   "CDK8 MUTATED" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887 
"CDK8 WILD-TYPE" "CDK8 WILD-TYPE" "CDK8 WILD-TYPE" "CDK8 WILD-TYPE" 
    TCGA-IB-7888     TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891 
"CDK8 WILD-TYPE" "CDK8 WILD-TYPE" "CDK8 WILD-TYPE" "CDK8 WILD-TYPE" 
    TCGA-IB-7893     TCGA-IB-7897     TCGA-IB-8126     TCGA-IB-8127 
  "CDK8 MUTATED" "CDK8 WILD-TYPE" "CDK8 WILD-TYPE" "CDK8 WILD-TYPE" 
    TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS 
"CDK8 WILD-TYPE" "CDK8 WILD-TYPE" "CDK8 WILD-TYPE" "CDK8 WILD-TYPE" 
    TCGA-IB-A5ST     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
"CDK8 WILD-TYPE" "CDK8 WILD-TYPE" "CDK8 WILD-TYPE" "CDK8 WILD-TYPE" 
    TCGA-PZ-A5RE     TCGA-Q3-A5QY     TCGA-US-A779     TCGA-US-A77E 
"CDK8 WILD-TYPE" "CDK8 WILD-TYPE" "CDK8 WILD-TYPE" "CDK8 WILD-TYPE" 
    TCGA-US-A77J 
"CDK8 WILD-TYPE" 
    TCGA-F2-6879     TCGA-F2-6880     TCGA-F2-7273     TCGA-F2-7276 
"CDK8 WILD-TYPE" "CDK8 WILD-TYPE" "CDK8 WILD-TYPE" "CDK8 WILD-TYPE" 
    TCGA-F2-A44G     TCGA-F2-A44H     TCGA-FB-A4P5     TCGA-FB-A4P6 
"CDK8 WILD-TYPE" "CDK8 WILD-TYPE" "CDK8 WILD-TYPE" "CDK8 WILD-TYPE" 
    TCGA-FB-A545     TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-FB-A7DR 
"CDK8 WILD-TYPE" "CDK8 WILD-TYPE" "CDK8 WILD-TYPE" "CDK8 WILD-TYPE" 
    TCGA-FZ-5920     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-H6-8124 
"CDK8 WILD-TYPE" "CDK8 WILD-TYPE" "CDK8 WILD-TYPE"   "CDK8 MUTATED" 
    TCGA-H6-A45N     TCGA-H8-A6C1     TCGA-HZ-7289     TCGA-HZ-7918 
"CDK8 WILD-TYPE" "CDK8 WILD-TYPE" "CDK8 WILD-TYPE" "CDK8 WILD-TYPE" 
    TCGA-HZ-7919     TCGA-HZ-7922     TCGA-HZ-7923     TCGA-HZ-7924 
"CDK8 WILD-TYPE" "CDK8 WILD-TYPE" "CDK8 WILD-TYPE" "CDK8 WILD-TYPE" 
    TCGA-HZ-7925     TCGA-HZ-7926     TCGA-HZ-8001     TCGA-HZ-8002 
"CDK8 WILD-TYPE" "CDK8 WILD-TYPE"   "CDK8 MUTATED" "CDK8 WILD-TYPE" 
    TCGA-HZ-8003     TCGA-HZ-8005     TCGA-HZ-8315     TCGA-HZ-8317 
"CDK8 WILD-TYPE" "CDK8 WILD-TYPE" "CDK8 WILD-TYPE" "CDK8 WILD-TYPE" 
    TCGA-HZ-8636     TCGA-HZ-8638     TCGA-HZ-A49G     TCGA-HZ-A49H 
"CDK8 WILD-TYPE" "CDK8 WILD-TYPE" "CDK8 WILD-TYPE" "CDK8 WILD-TYPE" 
    TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-IB-7644     TCGA-IB-7645 
"CDK8 WILD-TYPE"   "CDK8 MUTATED" "CDK8 WILD-TYPE" "CDK8 WILD-TYPE" 
    TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7651 
"CDK8 WILD-TYPE" "CDK8 WILD-TYPE" "CDK8 WILD-TYPE"   "CDK8 MUTATED" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887 
"CDK8 WILD-TYPE" "CDK8 WILD-TYPE" "CDK8 WILD-TYPE" "CDK8 WILD-TYPE" 
    TCGA-IB-7888     TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891 
"CDK8 WILD-TYPE" "CDK8 WILD-TYPE" "CDK8 WILD-TYPE" "CDK8 WILD-TYPE" 
    TCGA-IB-7893     TCGA-IB-7897     TCGA-IB-8126     TCGA-IB-8127 
  "CDK8 MUTATED" "CDK8 WILD-TYPE" "CDK8 WILD-TYPE" "CDK8 WILD-TYPE" 
    TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS 
"CDK8 WILD-TYPE" "CDK8 WILD-TYPE" "CDK8 WILD-TYPE" "CDK8 WILD-TYPE" 
    TCGA-IB-A5ST     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
"CDK8 WILD-TYPE" "CDK8 WILD-TYPE" "CDK8 WILD-TYPE" "CDK8 WILD-TYPE" 
    TCGA-PZ-A5RE     TCGA-Q3-A5QY     TCGA-US-A779     TCGA-US-A77E 
"CDK8 WILD-TYPE" "CDK8 WILD-TYPE" "CDK8 WILD-TYPE" "CDK8 WILD-TYPE" 
    TCGA-US-A77J 
"CDK8 WILD-TYPE" 
    TCGA-F2-6879     TCGA-F2-6880     TCGA-F2-7273     TCGA-F2-7276 
"CDK8 WILD-TYPE" "CDK8 WILD-TYPE" "CDK8 WILD-TYPE" "CDK8 WILD-TYPE" 
    TCGA-F2-A44G     TCGA-F2-A44H     TCGA-FB-A4P5     TCGA-FB-A4P6 
"CDK8 WILD-TYPE" "CDK8 WILD-TYPE" "CDK8 WILD-TYPE" "CDK8 WILD-TYPE" 
    TCGA-FB-A545     TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-FB-A7DR 
"CDK8 WILD-TYPE" "CDK8 WILD-TYPE" "CDK8 WILD-TYPE" "CDK8 WILD-TYPE" 
    TCGA-FZ-5920     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-H6-8124 
"CDK8 WILD-TYPE" "CDK8 WILD-TYPE" "CDK8 WILD-TYPE"   "CDK8 MUTATED" 
    TCGA-H6-A45N     TCGA-H8-A6C1     TCGA-HZ-7289     TCGA-HZ-7918 
"CDK8 WILD-TYPE" "CDK8 WILD-TYPE" "CDK8 WILD-TYPE" "CDK8 WILD-TYPE" 
    TCGA-HZ-7919     TCGA-HZ-7922     TCGA-HZ-7923     TCGA-HZ-7924 
"CDK8 WILD-TYPE" "CDK8 WILD-TYPE" "CDK8 WILD-TYPE" "CDK8 WILD-TYPE" 
    TCGA-HZ-7925     TCGA-HZ-7926     TCGA-HZ-8001     TCGA-HZ-8002 
"CDK8 WILD-TYPE" "CDK8 WILD-TYPE"   "CDK8 MUTATED" "CDK8 WILD-TYPE" 
    TCGA-HZ-8003     TCGA-HZ-8005     TCGA-HZ-8315     TCGA-HZ-8317 
"CDK8 WILD-TYPE" "CDK8 WILD-TYPE" "CDK8 WILD-TYPE" "CDK8 WILD-TYPE" 
    TCGA-HZ-8636     TCGA-HZ-8638     TCGA-HZ-A49G     TCGA-HZ-A49H 
"CDK8 WILD-TYPE" "CDK8 WILD-TYPE" "CDK8 WILD-TYPE" "CDK8 WILD-TYPE" 
    TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-IB-7644     TCGA-IB-7645 
"CDK8 WILD-TYPE"   "CDK8 MUTATED" "CDK8 WILD-TYPE" "CDK8 WILD-TYPE" 
    TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7651 
"CDK8 WILD-TYPE" "CDK8 WILD-TYPE" "CDK8 WILD-TYPE"   "CDK8 MUTATED" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887 
"CDK8 WILD-TYPE" "CDK8 WILD-TYPE" "CDK8 WILD-TYPE" "CDK8 WILD-TYPE" 
    TCGA-IB-7888     TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891 
"CDK8 WILD-TYPE" "CDK8 WILD-TYPE" "CDK8 WILD-TYPE" "CDK8 WILD-TYPE" 
    TCGA-IB-7893     TCGA-IB-7897     TCGA-IB-8126     TCGA-IB-8127 
  "CDK8 MUTATED" "CDK8 WILD-TYPE" "CDK8 WILD-TYPE" "CDK8 WILD-TYPE" 
    TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS 
"CDK8 WILD-TYPE" "CDK8 WILD-TYPE" "CDK8 WILD-TYPE" "CDK8 WILD-TYPE" 
    TCGA-IB-A5ST     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
"CDK8 WILD-TYPE" "CDK8 WILD-TYPE" "CDK8 WILD-TYPE" "CDK8 WILD-TYPE" 
    TCGA-PZ-A5RE     TCGA-Q3-A5QY     TCGA-US-A779     TCGA-US-A77E 
"CDK8 WILD-TYPE" "CDK8 WILD-TYPE" "CDK8 WILD-TYPE" "CDK8 WILD-TYPE" 
    TCGA-US-A77J 
"CDK8 WILD-TYPE" 
[1] "hr=" "1.2"
D296V2, continuous
                vv
clus             STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  CDK8 MUTATED          0        0         1         3         1        0
  CDK8 WILD-TYPE        1        4        10        48         1        3
D296V3, multiclass
                vv
clus             T1+T2 T3+T4
  CDK8 MUTATED       0     5
  CDK8 WILD-TYPE     6    61
D296V4, multiclass
       clus
vv      CDK8 MUTATED CDK8 WILD-TYPE
  T1+T2            0              6
  T3+T4            5             61
D296V5, binary
                cls
clus              0  1
  CDK8 MUTATED    2  3
  CDK8 WILD-TYPE 15 51
[1] "tbl2"
                cls
clus             [,1] [,2]
  CDK8 MUTATED      2    3
  CDK8 WILD-TYPE   15   51
   clus
vv  CDK8 MUTATED CDK8 WILD-TYPE
  0            2             15
  1            3             51
                vv
clus             M0 M1 MX
  CDK8 MUTATED    3  0  2
  CDK8 WILD-TYPE 36  3 28
D296V6, multiclass
    clus
vv   CDK8 MUTATED CDK8 WILD-TYPE
  M0            3             36
  M1            0              3
  MX            2             28
D296V7, binary
                cls
clus              0  1
  CDK8 MUTATED    2  3
  CDK8 WILD-TYPE 34 33
[1] "tbl2"
                cls
clus             [,1] [,2]
  CDK8 MUTATED      2    3
  CDK8 WILD-TYPE   34   33
        clus
vv       CDK8 MUTATED CDK8 WILD-TYPE
  FEMALE            2             34
  MALE              3             33
                vv
clus             PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  CDK8 MUTATED                                     4
  CDK8 WILD-TYPE                                  61
                vv
clus             PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  CDK8 MUTATED                                       1
  CDK8 WILD-TYPE                                     3
                vv
clus             PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  CDK8 MUTATED                                                  0
  CDK8 WILD-TYPE                                                2
D296V8, multiclass
                                                  clus
vv                                                 CDK8 MUTATED CDK8 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                         4             61
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                       1              3
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA            0              2
D296V9, continuous
[1] "Remove cluster labels:" "CDK8 MUTATED"          
clus
  CDK8 MUTATED CDK8 WILD-TYPE 
             2             20 
    TCGA-F2-6880     TCGA-FB-A4P5     TCGA-FB-A4P6     TCGA-FB-A5VM 
"CDK8 WILD-TYPE" "CDK8 WILD-TYPE" "CDK8 WILD-TYPE" "CDK8 WILD-TYPE" 
    TCGA-FB-A78T     TCGA-FB-A7DR     TCGA-H6-A45N     TCGA-H8-A6C1 
"CDK8 WILD-TYPE" "CDK8 WILD-TYPE" "CDK8 WILD-TYPE" "CDK8 WILD-TYPE" 
    TCGA-IB-7644     TCGA-IB-7649     TCGA-IB-7885     TCGA-IB-7886 
"CDK8 WILD-TYPE" "CDK8 WILD-TYPE" "CDK8 WILD-TYPE" "CDK8 WILD-TYPE" 
    TCGA-IB-7887     TCGA-IB-7891     TCGA-IB-8126     TCGA-IB-8127 
"CDK8 WILD-TYPE" "CDK8 WILD-TYPE" "CDK8 WILD-TYPE" "CDK8 WILD-TYPE" 
    TCGA-IB-A5SS     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
"CDK8 WILD-TYPE" "CDK8 WILD-TYPE" "CDK8 WILD-TYPE" "CDK8 WILD-TYPE" 
D296V10, continuous
[1] "Remove cluster labels:" "CDK8 MUTATED"          
clus
  CDK8 MUTATED CDK8 WILD-TYPE 
             2             17 
    TCGA-FB-A4P5     TCGA-FB-A4P6     TCGA-FB-A5VM     TCGA-FB-A78T 
"CDK8 WILD-TYPE" "CDK8 WILD-TYPE" "CDK8 WILD-TYPE" "CDK8 WILD-TYPE" 
    TCGA-FB-A7DR     TCGA-H8-A6C1     TCGA-IB-7644     TCGA-IB-7649 
"CDK8 WILD-TYPE" "CDK8 WILD-TYPE" "CDK8 WILD-TYPE" "CDK8 WILD-TYPE" 
    TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7891     TCGA-IB-8126 
"CDK8 WILD-TYPE" "CDK8 WILD-TYPE" "CDK8 WILD-TYPE" "CDK8 WILD-TYPE" 
    TCGA-IB-8127     TCGA-IB-A5SS     TCGA-IB-A6UG     TCGA-LB-A7SX 
"CDK8 WILD-TYPE" "CDK8 WILD-TYPE" "CDK8 WILD-TYPE" "CDK8 WILD-TYPE" 
    TCGA-OE-A75W 
"CDK8 WILD-TYPE" 
                vv
clus             R0 R1 RX
  CDK8 MUTATED    4  1  0
  CDK8 WILD-TYPE 38 23  2
D296V11, multiclass
    clus
vv   CDK8 MUTATED CDK8 WILD-TYPE
  R0            4             38
  R1            1             23
  RX            0              2
D296V12, continuous

Clustering(297) Variable = MGA MUTATION ANALYSIS
D297V1, survival
               sevent
clus2            0  1
  MGA MUTATED    5  4
  MGA WILD-TYPE 35 25
  MGA MUTATED MGA WILD-TYPE 
            9            60 
  MGA MUTATED MGA WILD-TYPE 
            4            25 
$`MGA MUTATED`
TCGA-F2-7276 TCGA-H8-A6C1 TCGA-HZ-7289 TCGA-HZ-7919 TCGA-HZ-7923 TCGA-HZ-8315 
        7.10        13.02         7.89         0.66         0.26         0.92 
TCGA-IB-7644 TCGA-IB-7651 TCGA-IB-7897 
       11.41        19.82        15.98 

$`MGA WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-A44G TCGA-F2-A44H TCGA-FB-A4P5 
       10.98         9.70        11.84         5.03        19.27         0.13 
TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR TCGA-FZ-5920 
       11.93        12.66         2.47         0.03         5.46         2.01 
TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-HZ-7918 TCGA-HZ-7922 
       36.20        20.81        12.89         7.66         0.92         0.13 
TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 
       12.13        11.87         0.26         0.62         0.79         0.69 
TCGA-HZ-8005 TCGA-HZ-8317 TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H 
        3.95         0.53         0.16         2.99         0.76         0.95 
TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 
        6.38         1.51        49.38         4.77        21.90        15.35 
TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 
       15.65        27.98         4.04         3.62        43.79        15.81 
TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO 
       19.66        16.04         3.85         0.56        17.16        10.82 
TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX 
        9.86         7.20        15.12         0.26         1.35         4.18 
TCGA-OE-A75W TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
        3.62         8.12        13.68        16.80        14.14        18.67 

  MGA MUTATED MGA WILD-TYPE 
         0.26          0.03 
  MGA MUTATED MGA WILD-TYPE 
        19.82         49.38 
  MGA MUTATED MGA WILD-TYPE 
         7.89          7.43 
[1] "0.3 - 19.8 (7.9)" "0.0 - 49.4 (7.4)"
   TCGA-F2-6879    TCGA-F2-6880    TCGA-F2-7273    TCGA-F2-7276    TCGA-F2-A44G 
"MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE"   "MGA MUTATED" "MGA WILD-TYPE" 
   TCGA-F2-A44H    TCGA-FB-A4P5    TCGA-FB-A4P6    TCGA-FB-A545    TCGA-FB-A5VM 
"MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" 
   TCGA-FB-A78T    TCGA-FB-A7DR    TCGA-FZ-5920    TCGA-FZ-5922    TCGA-FZ-5923 
"MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" 
   TCGA-H6-8124    TCGA-H6-A45N    TCGA-H8-A6C1    TCGA-HZ-7289    TCGA-HZ-7918 
"MGA WILD-TYPE" "MGA WILD-TYPE"   "MGA MUTATED"   "MGA MUTATED" "MGA WILD-TYPE" 
   TCGA-HZ-7919    TCGA-HZ-7922    TCGA-HZ-7923    TCGA-HZ-7924    TCGA-HZ-7925 
  "MGA MUTATED" "MGA WILD-TYPE"   "MGA MUTATED" "MGA WILD-TYPE" "MGA WILD-TYPE" 
   TCGA-HZ-7926    TCGA-HZ-8001    TCGA-HZ-8002    TCGA-HZ-8003    TCGA-HZ-8005 
"MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" 
   TCGA-HZ-8315    TCGA-HZ-8317    TCGA-HZ-8636    TCGA-HZ-8638    TCGA-HZ-A49G 
  "MGA MUTATED" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" 
   TCGA-HZ-A49H    TCGA-HZ-A4BH    TCGA-HZ-A4BK    TCGA-IB-7644    TCGA-IB-7645 
"MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE"   "MGA MUTATED" "MGA WILD-TYPE" 
   TCGA-IB-7646    TCGA-IB-7647    TCGA-IB-7649    TCGA-IB-7651    TCGA-IB-7652 
"MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE"   "MGA MUTATED" "MGA WILD-TYPE" 
   TCGA-IB-7885    TCGA-IB-7886    TCGA-IB-7887    TCGA-IB-7888    TCGA-IB-7889 
"MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" 
   TCGA-IB-7890    TCGA-IB-7891    TCGA-IB-7893    TCGA-IB-7897    TCGA-IB-8126 
"MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE"   "MGA MUTATED" "MGA WILD-TYPE" 
   TCGA-IB-8127    TCGA-IB-A5SO    TCGA-IB-A5SP    TCGA-IB-A5SQ    TCGA-IB-A5SS 
"MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" 
   TCGA-IB-A5ST    TCGA-IB-A6UG    TCGA-LB-A7SX    TCGA-OE-A75W    TCGA-PZ-A5RE 
"MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" 
   TCGA-Q3-A5QY    TCGA-US-A779    TCGA-US-A77E    TCGA-US-A77J 
"MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" 
   TCGA-F2-6879    TCGA-F2-6880    TCGA-F2-7273    TCGA-F2-7276    TCGA-F2-A44G 
"MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE"   "MGA MUTATED" "MGA WILD-TYPE" 
   TCGA-F2-A44H    TCGA-FB-A4P5    TCGA-FB-A4P6    TCGA-FB-A545    TCGA-FB-A5VM 
"MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" 
   TCGA-FB-A78T    TCGA-FB-A7DR    TCGA-FZ-5920    TCGA-FZ-5922    TCGA-FZ-5923 
"MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" 
   TCGA-H6-8124    TCGA-H6-A45N    TCGA-H8-A6C1    TCGA-HZ-7289    TCGA-HZ-7918 
"MGA WILD-TYPE" "MGA WILD-TYPE"   "MGA MUTATED"   "MGA MUTATED" "MGA WILD-TYPE" 
   TCGA-HZ-7919    TCGA-HZ-7922    TCGA-HZ-7923    TCGA-HZ-7924    TCGA-HZ-7925 
  "MGA MUTATED" "MGA WILD-TYPE"   "MGA MUTATED" "MGA WILD-TYPE" "MGA WILD-TYPE" 
   TCGA-HZ-7926    TCGA-HZ-8001    TCGA-HZ-8002    TCGA-HZ-8003    TCGA-HZ-8005 
"MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" 
   TCGA-HZ-8315    TCGA-HZ-8317    TCGA-HZ-8636    TCGA-HZ-8638    TCGA-HZ-A49G 
  "MGA MUTATED" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" 
   TCGA-HZ-A49H    TCGA-HZ-A4BH    TCGA-HZ-A4BK    TCGA-IB-7644    TCGA-IB-7645 
"MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE"   "MGA MUTATED" "MGA WILD-TYPE" 
   TCGA-IB-7646    TCGA-IB-7647    TCGA-IB-7649    TCGA-IB-7651    TCGA-IB-7652 
"MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE"   "MGA MUTATED" "MGA WILD-TYPE" 
   TCGA-IB-7885    TCGA-IB-7886    TCGA-IB-7887    TCGA-IB-7888    TCGA-IB-7889 
"MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" 
   TCGA-IB-7890    TCGA-IB-7891    TCGA-IB-7893    TCGA-IB-7897    TCGA-IB-8126 
"MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE"   "MGA MUTATED" "MGA WILD-TYPE" 
   TCGA-IB-8127    TCGA-IB-A5SO    TCGA-IB-A5SP    TCGA-IB-A5SQ    TCGA-IB-A5SS 
"MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" 
   TCGA-IB-A5ST    TCGA-IB-A6UG    TCGA-LB-A7SX    TCGA-OE-A75W    TCGA-PZ-A5RE 
"MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" 
   TCGA-Q3-A5QY    TCGA-US-A779    TCGA-US-A77E    TCGA-US-A77J 
"MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" 
   TCGA-F2-6879    TCGA-F2-6880    TCGA-F2-7273    TCGA-F2-7276    TCGA-F2-A44G 
"MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE"   "MGA MUTATED" "MGA WILD-TYPE" 
   TCGA-F2-A44H    TCGA-FB-A4P5    TCGA-FB-A4P6    TCGA-FB-A545    TCGA-FB-A5VM 
"MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" 
   TCGA-FB-A78T    TCGA-FB-A7DR    TCGA-FZ-5920    TCGA-FZ-5922    TCGA-FZ-5923 
"MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" 
   TCGA-H6-8124    TCGA-H6-A45N    TCGA-H8-A6C1    TCGA-HZ-7289    TCGA-HZ-7918 
"MGA WILD-TYPE" "MGA WILD-TYPE"   "MGA MUTATED"   "MGA MUTATED" "MGA WILD-TYPE" 
   TCGA-HZ-7919    TCGA-HZ-7922    TCGA-HZ-7923    TCGA-HZ-7924    TCGA-HZ-7925 
  "MGA MUTATED" "MGA WILD-TYPE"   "MGA MUTATED" "MGA WILD-TYPE" "MGA WILD-TYPE" 
   TCGA-HZ-7926    TCGA-HZ-8001    TCGA-HZ-8002    TCGA-HZ-8003    TCGA-HZ-8005 
"MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" 
   TCGA-HZ-8315    TCGA-HZ-8317    TCGA-HZ-8636    TCGA-HZ-8638    TCGA-HZ-A49G 
  "MGA MUTATED" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" 
   TCGA-HZ-A49H    TCGA-HZ-A4BH    TCGA-HZ-A4BK    TCGA-IB-7644    TCGA-IB-7645 
"MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE"   "MGA MUTATED" "MGA WILD-TYPE" 
   TCGA-IB-7646    TCGA-IB-7647    TCGA-IB-7649    TCGA-IB-7651    TCGA-IB-7652 
"MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE"   "MGA MUTATED" "MGA WILD-TYPE" 
   TCGA-IB-7885    TCGA-IB-7886    TCGA-IB-7887    TCGA-IB-7888    TCGA-IB-7889 
"MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" 
   TCGA-IB-7890    TCGA-IB-7891    TCGA-IB-7893    TCGA-IB-7897    TCGA-IB-8126 
"MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE"   "MGA MUTATED" "MGA WILD-TYPE" 
   TCGA-IB-8127    TCGA-IB-A5SO    TCGA-IB-A5SP    TCGA-IB-A5SQ    TCGA-IB-A5SS 
"MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" 
   TCGA-IB-A5ST    TCGA-IB-A6UG    TCGA-LB-A7SX    TCGA-OE-A75W    TCGA-PZ-A5RE 
"MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" 
   TCGA-Q3-A5QY    TCGA-US-A779    TCGA-US-A77E    TCGA-US-A77J 
"MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" 
[1] "hr=" "1.4"
D297V2, continuous
               vv
clus            STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  MGA MUTATED          0        0         3         5         0        1
  MGA WILD-TYPE        1        4         8        46         2        2
D297V3, multiclass
               vv
clus            T1+T2 T3+T4
  MGA MUTATED       0     9
  MGA WILD-TYPE     6    57
D297V4, multiclass
       clus
vv      MGA MUTATED MGA WILD-TYPE
  T1+T2           0             6
  T3+T4           9            57
D297V5, binary
               cls
clus             0  1
  MGA MUTATED    3  6
  MGA WILD-TYPE 14 48
[1] "tbl2"
               cls
clus            [,1] [,2]
  MGA MUTATED      3    6
  MGA WILD-TYPE   14   48
   clus
vv  MGA MUTATED MGA WILD-TYPE
  0           3            14
  1           6            48
               vv
clus            M0 M1 MX
  MGA MUTATED    4  1  4
  MGA WILD-TYPE 35  2 26
D297V6, multiclass
    clus
vv   MGA MUTATED MGA WILD-TYPE
  M0           4            35
  M1           1             2
  MX           4            26
D297V7, binary
               cls
clus             0  1
  MGA MUTATED    5  4
  MGA WILD-TYPE 31 32
[1] "tbl2"
               cls
clus            [,1] [,2]
  MGA MUTATED      5    4
  MGA WILD-TYPE   31   32
        clus
vv       MGA MUTATED MGA WILD-TYPE
  FEMALE           5            31
  MALE             4            32
               vv
clus            PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  MGA MUTATED                                     7
  MGA WILD-TYPE                                  58
               vv
clus            PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  MGA MUTATED                                       2
  MGA WILD-TYPE                                     2
               vv
clus            PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  MGA MUTATED                                                  0
  MGA WILD-TYPE                                                2
D297V8, multiclass
                                                  clus
vv                                                 MGA MUTATED MGA WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                        7            58
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                      2             2
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA           0             2
D297V9, continuous
D297V10, continuous
               vv
clus            R0 R1 RX
  MGA MUTATED    5  3  1
  MGA WILD-TYPE 37 21  1
D297V11, multiclass
    clus
vv   MGA MUTATED MGA WILD-TYPE
  R0           5            37
  R1           3            21
  RX           1             1
D297V12, continuous

Clustering(298) Variable = NUCB1 MUTATION ANALYSIS
D298V1, survival
                 sevent
clus2              0  1
  NUCB1 MUTATED    4  1
  NUCB1 WILD-TYPE 36 28
  NUCB1 MUTATED NUCB1 WILD-TYPE 
              5              64 
  NUCB1 MUTATED NUCB1 WILD-TYPE 
              1              28 
$`NUCB1 MUTATED`
TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8636 TCGA-IB-A5ST TCGA-Q3-A5QY 
        0.69         3.95         0.16         0.26        13.68 

$`NUCB1 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P5 TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR 
        0.13        11.93        12.66         2.47         0.03         5.46 
TCGA-FZ-5920 TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 
        2.01        36.20        20.81        12.89         7.66        13.02 
TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 
        7.89         0.92         0.66         0.13         0.26        12.13 
TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8315 TCGA-HZ-8317 
       11.87         0.26         0.62         0.79         0.92         0.53 
TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 
        2.99         0.76         0.95         6.38         1.51        11.41 
TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7651 TCGA-IB-7652 
       49.38         4.77        21.90        15.35        19.82        15.65 
TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 
       27.98         4.04         3.62        43.79        15.81        19.66 
TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO 
       16.04         3.85        15.98         0.56        17.16        10.82 
TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W 
        9.86         7.20        15.12         1.35         4.18         3.62 
TCGA-PZ-A5RE TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
        8.12        16.80        14.14        18.67 

  NUCB1 MUTATED NUCB1 WILD-TYPE 
           0.16            0.03 
  NUCB1 MUTATED NUCB1 WILD-TYPE 
          13.68           49.38 
  NUCB1 MUTATED NUCB1 WILD-TYPE 
          0.690           8.005 
[1] "0.2 - 13.7 (0.7)" "0.0 - 49.4 (8.0)"
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"NUCB1 WILD-TYPE" "NUCB1 WILD-TYPE" "NUCB1 WILD-TYPE" "NUCB1 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"NUCB1 WILD-TYPE" "NUCB1 WILD-TYPE" "NUCB1 WILD-TYPE" "NUCB1 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"NUCB1 WILD-TYPE" "NUCB1 WILD-TYPE" "NUCB1 WILD-TYPE" "NUCB1 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"NUCB1 WILD-TYPE" "NUCB1 WILD-TYPE" "NUCB1 WILD-TYPE" "NUCB1 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"NUCB1 WILD-TYPE" "NUCB1 WILD-TYPE" "NUCB1 WILD-TYPE" "NUCB1 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"NUCB1 WILD-TYPE" "NUCB1 WILD-TYPE" "NUCB1 WILD-TYPE" "NUCB1 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"NUCB1 WILD-TYPE" "NUCB1 WILD-TYPE" "NUCB1 WILD-TYPE" "NUCB1 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
  "NUCB1 MUTATED"   "NUCB1 MUTATED" "NUCB1 WILD-TYPE" "NUCB1 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
  "NUCB1 MUTATED" "NUCB1 WILD-TYPE" "NUCB1 WILD-TYPE" "NUCB1 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"NUCB1 WILD-TYPE" "NUCB1 WILD-TYPE" "NUCB1 WILD-TYPE" "NUCB1 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"NUCB1 WILD-TYPE" "NUCB1 WILD-TYPE" "NUCB1 WILD-TYPE" "NUCB1 WILD-TYPE" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"NUCB1 WILD-TYPE" "NUCB1 WILD-TYPE" "NUCB1 WILD-TYPE" "NUCB1 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"NUCB1 WILD-TYPE" "NUCB1 WILD-TYPE" "NUCB1 WILD-TYPE" "NUCB1 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"NUCB1 WILD-TYPE" "NUCB1 WILD-TYPE" "NUCB1 WILD-TYPE" "NUCB1 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"NUCB1 WILD-TYPE" "NUCB1 WILD-TYPE" "NUCB1 WILD-TYPE" "NUCB1 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
  "NUCB1 MUTATED" "NUCB1 WILD-TYPE" "NUCB1 WILD-TYPE" "NUCB1 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"NUCB1 WILD-TYPE"   "NUCB1 MUTATED" "NUCB1 WILD-TYPE" "NUCB1 WILD-TYPE" 
     TCGA-US-A77J 
"NUCB1 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"NUCB1 WILD-TYPE" "NUCB1 WILD-TYPE" "NUCB1 WILD-TYPE" "NUCB1 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"NUCB1 WILD-TYPE" "NUCB1 WILD-TYPE" "NUCB1 WILD-TYPE" "NUCB1 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"NUCB1 WILD-TYPE" "NUCB1 WILD-TYPE" "NUCB1 WILD-TYPE" "NUCB1 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"NUCB1 WILD-TYPE" "NUCB1 WILD-TYPE" "NUCB1 WILD-TYPE" "NUCB1 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"NUCB1 WILD-TYPE" "NUCB1 WILD-TYPE" "NUCB1 WILD-TYPE" "NUCB1 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"NUCB1 WILD-TYPE" "NUCB1 WILD-TYPE" "NUCB1 WILD-TYPE" "NUCB1 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"NUCB1 WILD-TYPE" "NUCB1 WILD-TYPE" "NUCB1 WILD-TYPE" "NUCB1 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
  "NUCB1 MUTATED"   "NUCB1 MUTATED" "NUCB1 WILD-TYPE" "NUCB1 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
  "NUCB1 MUTATED" "NUCB1 WILD-TYPE" "NUCB1 WILD-TYPE" "NUCB1 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"NUCB1 WILD-TYPE" "NUCB1 WILD-TYPE" "NUCB1 WILD-TYPE" "NUCB1 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"NUCB1 WILD-TYPE" "NUCB1 WILD-TYPE" "NUCB1 WILD-TYPE" "NUCB1 WILD-TYPE" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"NUCB1 WILD-TYPE" "NUCB1 WILD-TYPE" "NUCB1 WILD-TYPE" "NUCB1 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"NUCB1 WILD-TYPE" "NUCB1 WILD-TYPE" "NUCB1 WILD-TYPE" "NUCB1 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"NUCB1 WILD-TYPE" "NUCB1 WILD-TYPE" "NUCB1 WILD-TYPE" "NUCB1 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"NUCB1 WILD-TYPE" "NUCB1 WILD-TYPE" "NUCB1 WILD-TYPE" "NUCB1 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
  "NUCB1 MUTATED" "NUCB1 WILD-TYPE" "NUCB1 WILD-TYPE" "NUCB1 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"NUCB1 WILD-TYPE"   "NUCB1 MUTATED" "NUCB1 WILD-TYPE" "NUCB1 WILD-TYPE" 
     TCGA-US-A77J 
"NUCB1 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"NUCB1 WILD-TYPE" "NUCB1 WILD-TYPE" "NUCB1 WILD-TYPE" "NUCB1 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"NUCB1 WILD-TYPE" "NUCB1 WILD-TYPE" "NUCB1 WILD-TYPE" "NUCB1 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"NUCB1 WILD-TYPE" "NUCB1 WILD-TYPE" "NUCB1 WILD-TYPE" "NUCB1 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"NUCB1 WILD-TYPE" "NUCB1 WILD-TYPE" "NUCB1 WILD-TYPE" "NUCB1 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"NUCB1 WILD-TYPE" "NUCB1 WILD-TYPE" "NUCB1 WILD-TYPE" "NUCB1 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"NUCB1 WILD-TYPE" "NUCB1 WILD-TYPE" "NUCB1 WILD-TYPE" "NUCB1 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"NUCB1 WILD-TYPE" "NUCB1 WILD-TYPE" "NUCB1 WILD-TYPE" "NUCB1 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
  "NUCB1 MUTATED"   "NUCB1 MUTATED" "NUCB1 WILD-TYPE" "NUCB1 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
  "NUCB1 MUTATED" "NUCB1 WILD-TYPE" "NUCB1 WILD-TYPE" "NUCB1 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"NUCB1 WILD-TYPE" "NUCB1 WILD-TYPE" "NUCB1 WILD-TYPE" "NUCB1 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"NUCB1 WILD-TYPE" "NUCB1 WILD-TYPE" "NUCB1 WILD-TYPE" "NUCB1 WILD-TYPE" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"NUCB1 WILD-TYPE" "NUCB1 WILD-TYPE" "NUCB1 WILD-TYPE" "NUCB1 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"NUCB1 WILD-TYPE" "NUCB1 WILD-TYPE" "NUCB1 WILD-TYPE" "NUCB1 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"NUCB1 WILD-TYPE" "NUCB1 WILD-TYPE" "NUCB1 WILD-TYPE" "NUCB1 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"NUCB1 WILD-TYPE" "NUCB1 WILD-TYPE" "NUCB1 WILD-TYPE" "NUCB1 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
  "NUCB1 MUTATED" "NUCB1 WILD-TYPE" "NUCB1 WILD-TYPE" "NUCB1 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"NUCB1 WILD-TYPE"   "NUCB1 MUTATED" "NUCB1 WILD-TYPE" "NUCB1 WILD-TYPE" 
     TCGA-US-A77J 
"NUCB1 WILD-TYPE" 
[1] "hr=" "1.9"
D298V2, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  NUCB1 MUTATED          0        0         0         4         0        1
  NUCB1 WILD-TYPE        1        4        11        47         2        2
D298V3, multiclass
                 vv
clus              T1+T2 T3+T4
  NUCB1 MUTATED       0     5
  NUCB1 WILD-TYPE     6    61
D298V4, multiclass
       clus
vv      NUCB1 MUTATED NUCB1 WILD-TYPE
  T1+T2             0               6
  T3+T4             5              61
D298V5, binary
                 cls
clus               0  1
  NUCB1 MUTATED    1  4
  NUCB1 WILD-TYPE 16 50
[1] "tbl2"
                 cls
clus              [,1] [,2]
  NUCB1 MUTATED      1    4
  NUCB1 WILD-TYPE   16   50
   clus
vv  NUCB1 MUTATED NUCB1 WILD-TYPE
  0             1              16
  1             4              50
                 vv
clus              M0 M1 MX
  NUCB1 MUTATED    1  1  3
  NUCB1 WILD-TYPE 38  2 27
D298V6, multiclass
    clus
vv   NUCB1 MUTATED NUCB1 WILD-TYPE
  M0             1              38
  M1             1               2
  MX             3              27
D298V7, binary
                 cls
clus               0  1
  NUCB1 MUTATED    3  2
  NUCB1 WILD-TYPE 33 34
[1] "tbl2"
                 cls
clus              [,1] [,2]
  NUCB1 MUTATED      3    2
  NUCB1 WILD-TYPE   33   34
        clus
vv       NUCB1 MUTATED NUCB1 WILD-TYPE
  FEMALE             3              33
  MALE               2              34
                 vv
clus              PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  NUCB1 MUTATED                                     5
  NUCB1 WILD-TYPE                                  60
                 vv
clus              PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  NUCB1 MUTATED                                       0
  NUCB1 WILD-TYPE                                     4
                 vv
clus              PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  NUCB1 MUTATED                                                  0
  NUCB1 WILD-TYPE                                                2
D298V8, multiclass
                                                  clus
vv                                                 NUCB1 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                          5
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                        0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA             0
                                                  clus
vv                                                 NUCB1 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                           60
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                          4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA               2
D298V9, continuous
D298V10, continuous
                 vv
clus              R0 R1 RX
  NUCB1 MUTATED    3  2  0
  NUCB1 WILD-TYPE 39 22  2
D298V11, multiclass
    clus
vv   NUCB1 MUTATED NUCB1 WILD-TYPE
  R0             3              39
  R1             2              22
  RX             0               2
D298V12, continuous

Clustering(299) Variable = PPIL6 MUTATION ANALYSIS
D299V1, survival
                 sevent
clus2              0  1
  PPIL6 MUTATED    0  4
  PPIL6 WILD-TYPE 40 25
  PPIL6 MUTATED PPIL6 WILD-TYPE 
              4              65 
  PPIL6 MUTATED PPIL6 WILD-TYPE 
              4              25 
$`PPIL6 MUTATED`
TCGA-F2-7276 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 
        7.10         4.77        21.90        15.35 

$`PPIL6 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-A44G TCGA-F2-A44H TCGA-FB-A4P5 
       10.98         9.70        11.84         5.03        19.27         0.13 
TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR TCGA-FZ-5920 
       11.93        12.66         2.47         0.03         5.46         2.01 
TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7289 
       36.20        20.81        12.89         7.66        13.02         7.89 
TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 
        0.92         0.66         0.13         0.26        12.13        11.87 
TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 
        0.26         0.62         0.79         0.69         3.95         0.92 
TCGA-HZ-8317 TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH 
        0.53         0.16         2.99         0.76         0.95         6.38 
TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7651 TCGA-IB-7652 TCGA-IB-7885 
        1.51        11.41        49.38        19.82        15.65        27.98 
TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 
        4.04         3.62        43.79        15.81        19.66        16.04 
TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP 
        3.85        15.98         0.56        17.16        10.82         9.86 
TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W 
        7.20        15.12         0.26         1.35         4.18         3.62 
TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
        8.12        13.68        16.80        14.14        18.67 

  PPIL6 MUTATED PPIL6 WILD-TYPE 
           4.77            0.03 
  PPIL6 MUTATED PPIL6 WILD-TYPE 
          21.90           49.38 
  PPIL6 MUTATED PPIL6 WILD-TYPE 
         11.225           7.660 
[1] "4.8 - 21.9 (11.2)" "0.0 - 49.4 (7.7)" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"PPIL6 WILD-TYPE" "PPIL6 WILD-TYPE" "PPIL6 WILD-TYPE"   "PPIL6 MUTATED" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"PPIL6 WILD-TYPE" "PPIL6 WILD-TYPE" "PPIL6 WILD-TYPE" "PPIL6 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"PPIL6 WILD-TYPE" "PPIL6 WILD-TYPE" "PPIL6 WILD-TYPE" "PPIL6 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"PPIL6 WILD-TYPE" "PPIL6 WILD-TYPE" "PPIL6 WILD-TYPE" "PPIL6 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"PPIL6 WILD-TYPE" "PPIL6 WILD-TYPE" "PPIL6 WILD-TYPE" "PPIL6 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"PPIL6 WILD-TYPE" "PPIL6 WILD-TYPE" "PPIL6 WILD-TYPE" "PPIL6 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"PPIL6 WILD-TYPE" "PPIL6 WILD-TYPE" "PPIL6 WILD-TYPE" "PPIL6 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"PPIL6 WILD-TYPE" "PPIL6 WILD-TYPE" "PPIL6 WILD-TYPE" "PPIL6 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"PPIL6 WILD-TYPE" "PPIL6 WILD-TYPE" "PPIL6 WILD-TYPE" "PPIL6 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"PPIL6 WILD-TYPE" "PPIL6 WILD-TYPE" "PPIL6 WILD-TYPE" "PPIL6 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
  "PPIL6 MUTATED"   "PPIL6 MUTATED"   "PPIL6 MUTATED" "PPIL6 WILD-TYPE" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"PPIL6 WILD-TYPE" "PPIL6 WILD-TYPE" "PPIL6 WILD-TYPE" "PPIL6 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"PPIL6 WILD-TYPE" "PPIL6 WILD-TYPE" "PPIL6 WILD-TYPE" "PPIL6 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"PPIL6 WILD-TYPE" "PPIL6 WILD-TYPE" "PPIL6 WILD-TYPE" "PPIL6 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"PPIL6 WILD-TYPE" "PPIL6 WILD-TYPE" "PPIL6 WILD-TYPE" "PPIL6 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"PPIL6 WILD-TYPE" "PPIL6 WILD-TYPE" "PPIL6 WILD-TYPE" "PPIL6 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"PPIL6 WILD-TYPE" "PPIL6 WILD-TYPE" "PPIL6 WILD-TYPE" "PPIL6 WILD-TYPE" 
     TCGA-US-A77J 
"PPIL6 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"PPIL6 WILD-TYPE" "PPIL6 WILD-TYPE" "PPIL6 WILD-TYPE"   "PPIL6 MUTATED" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"PPIL6 WILD-TYPE" "PPIL6 WILD-TYPE" "PPIL6 WILD-TYPE" "PPIL6 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"PPIL6 WILD-TYPE" "PPIL6 WILD-TYPE" "PPIL6 WILD-TYPE" "PPIL6 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"PPIL6 WILD-TYPE" "PPIL6 WILD-TYPE" "PPIL6 WILD-TYPE" "PPIL6 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"PPIL6 WILD-TYPE" "PPIL6 WILD-TYPE" "PPIL6 WILD-TYPE" "PPIL6 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"PPIL6 WILD-TYPE" "PPIL6 WILD-TYPE" "PPIL6 WILD-TYPE" "PPIL6 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"PPIL6 WILD-TYPE" "PPIL6 WILD-TYPE" "PPIL6 WILD-TYPE" "PPIL6 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"PPIL6 WILD-TYPE" "PPIL6 WILD-TYPE" "PPIL6 WILD-TYPE" "PPIL6 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"PPIL6 WILD-TYPE" "PPIL6 WILD-TYPE" "PPIL6 WILD-TYPE" "PPIL6 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"PPIL6 WILD-TYPE" "PPIL6 WILD-TYPE" "PPIL6 WILD-TYPE" "PPIL6 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
  "PPIL6 MUTATED"   "PPIL6 MUTATED"   "PPIL6 MUTATED" "PPIL6 WILD-TYPE" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"PPIL6 WILD-TYPE" "PPIL6 WILD-TYPE" "PPIL6 WILD-TYPE" "PPIL6 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"PPIL6 WILD-TYPE" "PPIL6 WILD-TYPE" "PPIL6 WILD-TYPE" "PPIL6 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"PPIL6 WILD-TYPE" "PPIL6 WILD-TYPE" "PPIL6 WILD-TYPE" "PPIL6 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"PPIL6 WILD-TYPE" "PPIL6 WILD-TYPE" "PPIL6 WILD-TYPE" "PPIL6 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"PPIL6 WILD-TYPE" "PPIL6 WILD-TYPE" "PPIL6 WILD-TYPE" "PPIL6 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"PPIL6 WILD-TYPE" "PPIL6 WILD-TYPE" "PPIL6 WILD-TYPE" "PPIL6 WILD-TYPE" 
     TCGA-US-A77J 
"PPIL6 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"PPIL6 WILD-TYPE" "PPIL6 WILD-TYPE" "PPIL6 WILD-TYPE"   "PPIL6 MUTATED" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"PPIL6 WILD-TYPE" "PPIL6 WILD-TYPE" "PPIL6 WILD-TYPE" "PPIL6 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"PPIL6 WILD-TYPE" "PPIL6 WILD-TYPE" "PPIL6 WILD-TYPE" "PPIL6 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"PPIL6 WILD-TYPE" "PPIL6 WILD-TYPE" "PPIL6 WILD-TYPE" "PPIL6 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"PPIL6 WILD-TYPE" "PPIL6 WILD-TYPE" "PPIL6 WILD-TYPE" "PPIL6 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"PPIL6 WILD-TYPE" "PPIL6 WILD-TYPE" "PPIL6 WILD-TYPE" "PPIL6 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"PPIL6 WILD-TYPE" "PPIL6 WILD-TYPE" "PPIL6 WILD-TYPE" "PPIL6 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"PPIL6 WILD-TYPE" "PPIL6 WILD-TYPE" "PPIL6 WILD-TYPE" "PPIL6 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"PPIL6 WILD-TYPE" "PPIL6 WILD-TYPE" "PPIL6 WILD-TYPE" "PPIL6 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"PPIL6 WILD-TYPE" "PPIL6 WILD-TYPE" "PPIL6 WILD-TYPE" "PPIL6 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
  "PPIL6 MUTATED"   "PPIL6 MUTATED"   "PPIL6 MUTATED" "PPIL6 WILD-TYPE" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"PPIL6 WILD-TYPE" "PPIL6 WILD-TYPE" "PPIL6 WILD-TYPE" "PPIL6 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"PPIL6 WILD-TYPE" "PPIL6 WILD-TYPE" "PPIL6 WILD-TYPE" "PPIL6 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"PPIL6 WILD-TYPE" "PPIL6 WILD-TYPE" "PPIL6 WILD-TYPE" "PPIL6 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"PPIL6 WILD-TYPE" "PPIL6 WILD-TYPE" "PPIL6 WILD-TYPE" "PPIL6 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"PPIL6 WILD-TYPE" "PPIL6 WILD-TYPE" "PPIL6 WILD-TYPE" "PPIL6 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"PPIL6 WILD-TYPE" "PPIL6 WILD-TYPE" "PPIL6 WILD-TYPE" "PPIL6 WILD-TYPE" 
     TCGA-US-A77J 
"PPIL6 WILD-TYPE" 
[1] "hr=" "1.8"
D299V2, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  PPIL6 MUTATED          0        0         0         4         0        0
  PPIL6 WILD-TYPE        1        4        11        47         2        3
D299V3, multiclass
                 vv
clus              T1+T2 T3+T4
  PPIL6 MUTATED       0     4
  PPIL6 WILD-TYPE     6    62
D299V4, multiclass
       clus
vv      PPIL6 MUTATED PPIL6 WILD-TYPE
  T1+T2             0               6
  T3+T4             4              62
D299V5, binary
                 cls
clus               0  1
  PPIL6 MUTATED    0  4
  PPIL6 WILD-TYPE 17 50
[1] "tbl2"
                 cls
clus              [,1] [,2]
  PPIL6 MUTATED      0    4
  PPIL6 WILD-TYPE   17   50
   clus
vv  PPIL6 MUTATED PPIL6 WILD-TYPE
  0             0              17
  1             4              50
                 vv
clus              M0 M1 MX
  PPIL6 MUTATED    4  0  0
  PPIL6 WILD-TYPE 35  3 30
D299V6, multiclass
    clus
vv   PPIL6 MUTATED PPIL6 WILD-TYPE
  M0             4              35
  M1             0               3
  MX             0              30
D299V7, binary
                 cls
clus               0  1
  PPIL6 MUTATED    2  2
  PPIL6 WILD-TYPE 34 34
[1] "tbl2"
                 cls
clus              [,1] [,2]
  PPIL6 MUTATED      2    2
  PPIL6 WILD-TYPE   34   34
        clus
vv       PPIL6 MUTATED PPIL6 WILD-TYPE
  FEMALE             2              34
  MALE               2              34
                 vv
clus              PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  PPIL6 MUTATED                                     4
  PPIL6 WILD-TYPE                                  61
                 vv
clus              PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  PPIL6 MUTATED                                       0
  PPIL6 WILD-TYPE                                     4
                 vv
clus              PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  PPIL6 MUTATED                                                  0
  PPIL6 WILD-TYPE                                                2
D299V8, multiclass
                                                  clus
vv                                                 PPIL6 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                          4
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                        0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA             0
                                                  clus
vv                                                 PPIL6 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                           61
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                          4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA               2
D299V9, continuous
[1] "Remove cluster labels:" "PPIL6 MUTATED"         
clus
  PPIL6 MUTATED PPIL6 WILD-TYPE 
              1              21 
     TCGA-F2-6880      TCGA-FB-A4P5      TCGA-FB-A4P6      TCGA-FB-A5VM 
"PPIL6 WILD-TYPE" "PPIL6 WILD-TYPE" "PPIL6 WILD-TYPE" "PPIL6 WILD-TYPE" 
     TCGA-FB-A78T      TCGA-FB-A7DR      TCGA-H6-8124      TCGA-H6-A45N 
"PPIL6 WILD-TYPE" "PPIL6 WILD-TYPE" "PPIL6 WILD-TYPE" "PPIL6 WILD-TYPE" 
     TCGA-H8-A6C1      TCGA-IB-7644      TCGA-IB-7651      TCGA-IB-7885 
"PPIL6 WILD-TYPE" "PPIL6 WILD-TYPE" "PPIL6 WILD-TYPE" "PPIL6 WILD-TYPE" 
     TCGA-IB-7886      TCGA-IB-7887      TCGA-IB-7891      TCGA-IB-8126 
"PPIL6 WILD-TYPE" "PPIL6 WILD-TYPE" "PPIL6 WILD-TYPE" "PPIL6 WILD-TYPE" 
     TCGA-IB-8127      TCGA-IB-A5SS      TCGA-IB-A6UG      TCGA-LB-A7SX 
"PPIL6 WILD-TYPE" "PPIL6 WILD-TYPE" "PPIL6 WILD-TYPE" "PPIL6 WILD-TYPE" 
     TCGA-OE-A75W 
"PPIL6 WILD-TYPE" 
D299V10, continuous
[1] "Remove cluster labels:" "PPIL6 MUTATED"         
clus
  PPIL6 MUTATED PPIL6 WILD-TYPE 
              1              18 
     TCGA-FB-A4P5      TCGA-FB-A4P6      TCGA-FB-A5VM      TCGA-FB-A78T 
"PPIL6 WILD-TYPE" "PPIL6 WILD-TYPE" "PPIL6 WILD-TYPE" "PPIL6 WILD-TYPE" 
     TCGA-FB-A7DR      TCGA-H6-8124      TCGA-H8-A6C1      TCGA-IB-7644 
"PPIL6 WILD-TYPE" "PPIL6 WILD-TYPE" "PPIL6 WILD-TYPE" "PPIL6 WILD-TYPE" 
     TCGA-IB-7651      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7891 
"PPIL6 WILD-TYPE" "PPIL6 WILD-TYPE" "PPIL6 WILD-TYPE" "PPIL6 WILD-TYPE" 
     TCGA-IB-8126      TCGA-IB-8127      TCGA-IB-A5SS      TCGA-IB-A6UG 
"PPIL6 WILD-TYPE" "PPIL6 WILD-TYPE" "PPIL6 WILD-TYPE" "PPIL6 WILD-TYPE" 
     TCGA-LB-A7SX      TCGA-OE-A75W 
"PPIL6 WILD-TYPE" "PPIL6 WILD-TYPE" 
                 vv
clus              R0 R1 RX
  PPIL6 MUTATED    1  3  0
  PPIL6 WILD-TYPE 41 21  2
D299V11, multiclass
    clus
vv   PPIL6 MUTATED PPIL6 WILD-TYPE
  R0             1              41
  R1             3              21
  RX             0               2
D299V12, continuous

Clustering(300) Variable = FKBP7 MUTATION ANALYSIS
D300V1, survival
                 sevent
clus2              0  1
  FKBP7 MUTATED    0  4
  FKBP7 WILD-TYPE 40 25
  FKBP7 MUTATED FKBP7 WILD-TYPE 
              4              65 
  FKBP7 MUTATED FKBP7 WILD-TYPE 
              4              25 
$`FKBP7 MUTATED`
TCGA-FZ-5920 TCGA-IB-7646 TCGA-IB-7651 TCGA-IB-7890 
        2.01         4.77        19.82        19.66 

$`FKBP7 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P5 TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR 
        0.13        11.93        12.66         2.47         0.03         5.46 
TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7289 
       36.20        20.81        12.89         7.66        13.02         7.89 
TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 
        0.92         0.66         0.13         0.26        12.13        11.87 
TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 
        0.26         0.62         0.79         0.69         3.95         0.92 
TCGA-HZ-8317 TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH 
        0.53         0.16         2.99         0.76         0.95         6.38 
TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7652 
        1.51        11.41        49.38        21.90        15.35        15.65 
TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7891 
       27.98         4.04         3.62        43.79        15.81        16.04 
TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP 
        3.85        15.98         0.56        17.16        10.82         9.86 
TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W 
        7.20        15.12         0.26         1.35         4.18         3.62 
TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
        8.12        13.68        16.80        14.14        18.67 

  FKBP7 MUTATED FKBP7 WILD-TYPE 
           2.01            0.03 
  FKBP7 MUTATED FKBP7 WILD-TYPE 
          19.82           49.38 
  FKBP7 MUTATED FKBP7 WILD-TYPE 
         12.215           7.660 
[1] "2.0 - 19.8 (12.2)" "0.0 - 49.4 (7.7)" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"FKBP7 WILD-TYPE" "FKBP7 WILD-TYPE" "FKBP7 WILD-TYPE" "FKBP7 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"FKBP7 WILD-TYPE" "FKBP7 WILD-TYPE" "FKBP7 WILD-TYPE" "FKBP7 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"FKBP7 WILD-TYPE" "FKBP7 WILD-TYPE" "FKBP7 WILD-TYPE" "FKBP7 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
  "FKBP7 MUTATED" "FKBP7 WILD-TYPE" "FKBP7 WILD-TYPE" "FKBP7 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"FKBP7 WILD-TYPE" "FKBP7 WILD-TYPE" "FKBP7 WILD-TYPE" "FKBP7 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"FKBP7 WILD-TYPE" "FKBP7 WILD-TYPE" "FKBP7 WILD-TYPE" "FKBP7 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"FKBP7 WILD-TYPE" "FKBP7 WILD-TYPE" "FKBP7 WILD-TYPE" "FKBP7 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"FKBP7 WILD-TYPE" "FKBP7 WILD-TYPE" "FKBP7 WILD-TYPE" "FKBP7 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"FKBP7 WILD-TYPE" "FKBP7 WILD-TYPE" "FKBP7 WILD-TYPE" "FKBP7 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"FKBP7 WILD-TYPE" "FKBP7 WILD-TYPE" "FKBP7 WILD-TYPE" "FKBP7 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
  "FKBP7 MUTATED" "FKBP7 WILD-TYPE" "FKBP7 WILD-TYPE"   "FKBP7 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"FKBP7 WILD-TYPE" "FKBP7 WILD-TYPE" "FKBP7 WILD-TYPE" "FKBP7 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"FKBP7 WILD-TYPE" "FKBP7 WILD-TYPE"   "FKBP7 MUTATED" "FKBP7 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"FKBP7 WILD-TYPE" "FKBP7 WILD-TYPE" "FKBP7 WILD-TYPE" "FKBP7 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"FKBP7 WILD-TYPE" "FKBP7 WILD-TYPE" "FKBP7 WILD-TYPE" "FKBP7 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"FKBP7 WILD-TYPE" "FKBP7 WILD-TYPE" "FKBP7 WILD-TYPE" "FKBP7 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"FKBP7 WILD-TYPE" "FKBP7 WILD-TYPE" "FKBP7 WILD-TYPE" "FKBP7 WILD-TYPE" 
     TCGA-US-A77J 
"FKBP7 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"FKBP7 WILD-TYPE" "FKBP7 WILD-TYPE" "FKBP7 WILD-TYPE" "FKBP7 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"FKBP7 WILD-TYPE" "FKBP7 WILD-TYPE" "FKBP7 WILD-TYPE" "FKBP7 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"FKBP7 WILD-TYPE" "FKBP7 WILD-TYPE" "FKBP7 WILD-TYPE" "FKBP7 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
  "FKBP7 MUTATED" "FKBP7 WILD-TYPE" "FKBP7 WILD-TYPE" "FKBP7 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"FKBP7 WILD-TYPE" "FKBP7 WILD-TYPE" "FKBP7 WILD-TYPE" "FKBP7 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"FKBP7 WILD-TYPE" "FKBP7 WILD-TYPE" "FKBP7 WILD-TYPE" "FKBP7 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"FKBP7 WILD-TYPE" "FKBP7 WILD-TYPE" "FKBP7 WILD-TYPE" "FKBP7 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"FKBP7 WILD-TYPE" "FKBP7 WILD-TYPE" "FKBP7 WILD-TYPE" "FKBP7 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"FKBP7 WILD-TYPE" "FKBP7 WILD-TYPE" "FKBP7 WILD-TYPE" "FKBP7 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"FKBP7 WILD-TYPE" "FKBP7 WILD-TYPE" "FKBP7 WILD-TYPE" "FKBP7 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
  "FKBP7 MUTATED" "FKBP7 WILD-TYPE" "FKBP7 WILD-TYPE"   "FKBP7 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"FKBP7 WILD-TYPE" "FKBP7 WILD-TYPE" "FKBP7 WILD-TYPE" "FKBP7 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"FKBP7 WILD-TYPE" "FKBP7 WILD-TYPE"   "FKBP7 MUTATED" "FKBP7 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"FKBP7 WILD-TYPE" "FKBP7 WILD-TYPE" "FKBP7 WILD-TYPE" "FKBP7 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"FKBP7 WILD-TYPE" "FKBP7 WILD-TYPE" "FKBP7 WILD-TYPE" "FKBP7 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"FKBP7 WILD-TYPE" "FKBP7 WILD-TYPE" "FKBP7 WILD-TYPE" "FKBP7 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"FKBP7 WILD-TYPE" "FKBP7 WILD-TYPE" "FKBP7 WILD-TYPE" "FKBP7 WILD-TYPE" 
     TCGA-US-A77J 
"FKBP7 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"FKBP7 WILD-TYPE" "FKBP7 WILD-TYPE" "FKBP7 WILD-TYPE" "FKBP7 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"FKBP7 WILD-TYPE" "FKBP7 WILD-TYPE" "FKBP7 WILD-TYPE" "FKBP7 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"FKBP7 WILD-TYPE" "FKBP7 WILD-TYPE" "FKBP7 WILD-TYPE" "FKBP7 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
  "FKBP7 MUTATED" "FKBP7 WILD-TYPE" "FKBP7 WILD-TYPE" "FKBP7 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"FKBP7 WILD-TYPE" "FKBP7 WILD-TYPE" "FKBP7 WILD-TYPE" "FKBP7 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"FKBP7 WILD-TYPE" "FKBP7 WILD-TYPE" "FKBP7 WILD-TYPE" "FKBP7 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"FKBP7 WILD-TYPE" "FKBP7 WILD-TYPE" "FKBP7 WILD-TYPE" "FKBP7 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"FKBP7 WILD-TYPE" "FKBP7 WILD-TYPE" "FKBP7 WILD-TYPE" "FKBP7 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"FKBP7 WILD-TYPE" "FKBP7 WILD-TYPE" "FKBP7 WILD-TYPE" "FKBP7 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"FKBP7 WILD-TYPE" "FKBP7 WILD-TYPE" "FKBP7 WILD-TYPE" "FKBP7 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
  "FKBP7 MUTATED" "FKBP7 WILD-TYPE" "FKBP7 WILD-TYPE"   "FKBP7 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"FKBP7 WILD-TYPE" "FKBP7 WILD-TYPE" "FKBP7 WILD-TYPE" "FKBP7 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"FKBP7 WILD-TYPE" "FKBP7 WILD-TYPE"   "FKBP7 MUTATED" "FKBP7 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"FKBP7 WILD-TYPE" "FKBP7 WILD-TYPE" "FKBP7 WILD-TYPE" "FKBP7 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"FKBP7 WILD-TYPE" "FKBP7 WILD-TYPE" "FKBP7 WILD-TYPE" "FKBP7 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"FKBP7 WILD-TYPE" "FKBP7 WILD-TYPE" "FKBP7 WILD-TYPE" "FKBP7 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"FKBP7 WILD-TYPE" "FKBP7 WILD-TYPE" "FKBP7 WILD-TYPE" "FKBP7 WILD-TYPE" 
     TCGA-US-A77J 
"FKBP7 WILD-TYPE" 
[1] "hr=" "1.9"
D300V2, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  FKBP7 MUTATED          0        1         0         4         0        0
  FKBP7 WILD-TYPE        1        3        11        47         2        3
D300V3, multiclass
                 vv
clus              T1+T2 T3+T4
  FKBP7 MUTATED       1     4
  FKBP7 WILD-TYPE     5    62
D300V4, multiclass
       clus
vv      FKBP7 MUTATED FKBP7 WILD-TYPE
  T1+T2             1               5
  T3+T4             4              62
D300V5, binary
                 cls
clus               0  1
  FKBP7 MUTATED    1  4
  FKBP7 WILD-TYPE 16 50
[1] "tbl2"
                 cls
clus              [,1] [,2]
  FKBP7 MUTATED      1    4
  FKBP7 WILD-TYPE   16   50
   clus
vv  FKBP7 MUTATED FKBP7 WILD-TYPE
  0             1              16
  1             4              50
                 vv
clus              M0 M1 MX
  FKBP7 MUTATED    4  0  1
  FKBP7 WILD-TYPE 35  3 29
D300V6, multiclass
    clus
vv   FKBP7 MUTATED FKBP7 WILD-TYPE
  M0             4              35
  M1             0               3
  MX             1              29
D300V7, binary
                 cls
clus               0  1
  FKBP7 MUTATED    2  3
  FKBP7 WILD-TYPE 34 33
[1] "tbl2"
                 cls
clus              [,1] [,2]
  FKBP7 MUTATED      2    3
  FKBP7 WILD-TYPE   34   33
        clus
vv       FKBP7 MUTATED FKBP7 WILD-TYPE
  FEMALE             2              34
  MALE               3              33
                 vv
clus              PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  FKBP7 MUTATED                                     5
  FKBP7 WILD-TYPE                                  60
                 vv
clus              PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  FKBP7 MUTATED                                       0
  FKBP7 WILD-TYPE                                     4
                 vv
clus              PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  FKBP7 MUTATED                                                  0
  FKBP7 WILD-TYPE                                                2
D300V8, multiclass
                                                  clus
vv                                                 FKBP7 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                          5
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                        0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA             0
                                                  clus
vv                                                 FKBP7 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                           60
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                          4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA               2
D300V9, continuous
[1] "Remove cluster labels:" "FKBP7 MUTATED"         
clus
  FKBP7 MUTATED FKBP7 WILD-TYPE 
              1              21 
     TCGA-F2-6880      TCGA-FB-A4P5      TCGA-FB-A4P6      TCGA-FB-A5VM 
"FKBP7 WILD-TYPE" "FKBP7 WILD-TYPE" "FKBP7 WILD-TYPE" "FKBP7 WILD-TYPE" 
     TCGA-FB-A78T      TCGA-FB-A7DR      TCGA-H6-8124      TCGA-H6-A45N 
"FKBP7 WILD-TYPE" "FKBP7 WILD-TYPE" "FKBP7 WILD-TYPE" "FKBP7 WILD-TYPE" 
     TCGA-H8-A6C1      TCGA-IB-7644      TCGA-IB-7649      TCGA-IB-7885 
"FKBP7 WILD-TYPE" "FKBP7 WILD-TYPE" "FKBP7 WILD-TYPE" "FKBP7 WILD-TYPE" 
     TCGA-IB-7886      TCGA-IB-7887      TCGA-IB-7891      TCGA-IB-8126 
"FKBP7 WILD-TYPE" "FKBP7 WILD-TYPE" "FKBP7 WILD-TYPE" "FKBP7 WILD-TYPE" 
     TCGA-IB-8127      TCGA-IB-A5SS      TCGA-IB-A6UG      TCGA-LB-A7SX 
"FKBP7 WILD-TYPE" "FKBP7 WILD-TYPE" "FKBP7 WILD-TYPE" "FKBP7 WILD-TYPE" 
     TCGA-OE-A75W 
"FKBP7 WILD-TYPE" 
D300V10, continuous
[1] "Remove cluster labels:" "FKBP7 MUTATED"         
clus
  FKBP7 MUTATED FKBP7 WILD-TYPE 
              1              18 
     TCGA-FB-A4P5      TCGA-FB-A4P6      TCGA-FB-A5VM      TCGA-FB-A78T 
"FKBP7 WILD-TYPE" "FKBP7 WILD-TYPE" "FKBP7 WILD-TYPE" "FKBP7 WILD-TYPE" 
     TCGA-FB-A7DR      TCGA-H6-8124      TCGA-H8-A6C1      TCGA-IB-7644 
"FKBP7 WILD-TYPE" "FKBP7 WILD-TYPE" "FKBP7 WILD-TYPE" "FKBP7 WILD-TYPE" 
     TCGA-IB-7649      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7891 
"FKBP7 WILD-TYPE" "FKBP7 WILD-TYPE" "FKBP7 WILD-TYPE" "FKBP7 WILD-TYPE" 
     TCGA-IB-8126      TCGA-IB-8127      TCGA-IB-A5SS      TCGA-IB-A6UG 
"FKBP7 WILD-TYPE" "FKBP7 WILD-TYPE" "FKBP7 WILD-TYPE" "FKBP7 WILD-TYPE" 
     TCGA-LB-A7SX      TCGA-OE-A75W 
"FKBP7 WILD-TYPE" "FKBP7 WILD-TYPE" 
                 vv
clus              R0 R1 RX
  FKBP7 MUTATED    4  1  0
  FKBP7 WILD-TYPE 38 23  2
D300V11, multiclass
    clus
vv   FKBP7 MUTATED FKBP7 WILD-TYPE
  R0             4              38
  R1             1              23
  RX             0               2
D300V12, continuous

Clustering(301) Variable = NTAN1 MUTATION ANALYSIS
D301V1, survival
                 sevent
clus2              0  1
  NTAN1 MUTATED    1  1
  NTAN1 WILD-TYPE 39 28
  NTAN1 MUTATED NTAN1 WILD-TYPE 
              2              67 
  NTAN1 MUTATED NTAN1 WILD-TYPE 
              1              28 
$`NTAN1 MUTATED`
TCGA-FB-A4P5 TCGA-HZ-7926 
        0.13         0.26 

$`NTAN1 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR TCGA-FZ-5920 
       11.93        12.66         2.47         0.03         5.46         2.01 
TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7289 
       36.20        20.81        12.89         7.66        13.02         7.89 
TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 
        0.92         0.66         0.13         0.26        12.13        11.87 
TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 
        0.62         0.79         0.69         3.95         0.92         0.53 
TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK 
        0.16         2.99         0.76         0.95         6.38         1.51 
TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7651 
       11.41        49.38         4.77        21.90        15.35        19.82 
TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 
       15.65        27.98         4.04         3.62        43.79        15.81 
TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-8127 
       19.66        16.04         3.85        15.98         0.56        17.16 
TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG 
       10.82         9.86         7.20        15.12         0.26         1.35 
TCGA-LB-A7SX TCGA-OE-A75W TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E 
        4.18         3.62         8.12        13.68        16.80        14.14 
TCGA-US-A77J 
       18.67 

  NTAN1 MUTATED NTAN1 WILD-TYPE 
           0.13            0.03 
  NTAN1 MUTATED NTAN1 WILD-TYPE 
           0.26           49.38 
  NTAN1 MUTATED NTAN1 WILD-TYPE 
          0.195           7.890 
[1] "0.1 - 0.3 (0.2)"  "0.0 - 49.4 (7.9)"
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE"   "NTAN1 MUTATED" "NTAN1 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"NTAN1 WILD-TYPE"   "NTAN1 MUTATED" "NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" 
     TCGA-US-A77J 
"NTAN1 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE"   "NTAN1 MUTATED" "NTAN1 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"NTAN1 WILD-TYPE"   "NTAN1 MUTATED" "NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" 
     TCGA-US-A77J 
"NTAN1 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE"   "NTAN1 MUTATED" "NTAN1 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"NTAN1 WILD-TYPE"   "NTAN1 MUTATED" "NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" 
     TCGA-US-A77J 
"NTAN1 WILD-TYPE" 
[1] "Remove cluster labels:" "NTAN1 MUTATED"         
clus
  NTAN1 MUTATED NTAN1 WILD-TYPE 
              2              67 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P6      TCGA-FB-A545 
"NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" 
     TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR      TCGA-FZ-5920 
"NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" 
     TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124      TCGA-H6-A45N 
"NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" 
     TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918      TCGA-HZ-7919 
"NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" 
     TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924      TCGA-HZ-7925 
"NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" 
     TCGA-HZ-8001      TCGA-HZ-8002      TCGA-HZ-8003      TCGA-HZ-8005 
"NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" 
     TCGA-HZ-8315      TCGA-HZ-8317      TCGA-HZ-8636      TCGA-HZ-8638 
"NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" 
     TCGA-HZ-A49G      TCGA-HZ-A49H      TCGA-HZ-A4BH      TCGA-HZ-A4BK 
"NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" 
     TCGA-IB-7644      TCGA-IB-7645      TCGA-IB-7646      TCGA-IB-7647 
"NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" 
     TCGA-IB-7649      TCGA-IB-7651      TCGA-IB-7652      TCGA-IB-7885 
"NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" 
     TCGA-IB-7886      TCGA-IB-7887      TCGA-IB-7888      TCGA-IB-7889 
"NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" 
     TCGA-IB-7890      TCGA-IB-7891      TCGA-IB-7893      TCGA-IB-7897 
"NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" 
     TCGA-IB-8126      TCGA-IB-8127      TCGA-IB-A5SO      TCGA-IB-A5SP 
"NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" 
     TCGA-IB-A5SQ      TCGA-IB-A5SS      TCGA-IB-A5ST      TCGA-IB-A6UG 
"NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" 
     TCGA-LB-A7SX      TCGA-OE-A75W      TCGA-PZ-A5RE      TCGA-Q3-A5QY 
"NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" 
     TCGA-US-A779      TCGA-US-A77E      TCGA-US-A77J 
"NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" 
D301V2, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  NTAN1 MUTATED          0        1         0         2         0        0
  NTAN1 WILD-TYPE        1        3        11        49         2        3
D301V3, multiclass
                 vv
clus              T1+T2 T3+T4
  NTAN1 MUTATED       1     2
  NTAN1 WILD-TYPE     5    64
D301V4, multiclass
       clus
vv      NTAN1 MUTATED NTAN1 WILD-TYPE
  T1+T2             1               5
  T3+T4             2              64
D301V5, binary
                 cls
clus               0  1
  NTAN1 MUTATED    1  2
  NTAN1 WILD-TYPE 16 52
[1] "tbl2"
                 cls
clus              [,1] [,2]
  NTAN1 MUTATED      1    2
  NTAN1 WILD-TYPE   16   52
   clus
vv  NTAN1 MUTATED NTAN1 WILD-TYPE
  0             1              16
  1             2              52
                 vv
clus              M0 M1 MX
  NTAN1 MUTATED    0  0  3
  NTAN1 WILD-TYPE 39  3 27
D301V6, multiclass
    clus
vv   NTAN1 MUTATED NTAN1 WILD-TYPE
  M0             0              39
  M1             0               3
  MX             3              27
D301V7, binary
                 cls
clus               0  1
  NTAN1 MUTATED    1  2
  NTAN1 WILD-TYPE 35 34
[1] "tbl2"
                 cls
clus              [,1] [,2]
  NTAN1 MUTATED      1    2
  NTAN1 WILD-TYPE   35   34
        clus
vv       NTAN1 MUTATED NTAN1 WILD-TYPE
  FEMALE             1              35
  MALE               2              34
                 vv
clus              PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  NTAN1 MUTATED                                     3
  NTAN1 WILD-TYPE                                  62
                 vv
clus              PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  NTAN1 MUTATED                                       0
  NTAN1 WILD-TYPE                                     4
                 vv
clus              PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  NTAN1 MUTATED                                                  0
  NTAN1 WILD-TYPE                                                2
D301V8, multiclass
                                                  clus
vv                                                 NTAN1 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                          3
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                        0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA             0
                                                  clus
vv                                                 NTAN1 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                           62
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                          4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA               2
D301V9, continuous
[1] "Remove cluster labels:" "NTAN1 MUTATED"         
clus
  NTAN1 MUTATED NTAN1 WILD-TYPE 
              1              21 
     TCGA-F2-6880      TCGA-FB-A4P6      TCGA-FB-A5VM      TCGA-FB-A78T 
"NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" 
     TCGA-FB-A7DR      TCGA-H6-8124      TCGA-H6-A45N      TCGA-H8-A6C1 
"NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" 
     TCGA-IB-7644      TCGA-IB-7649      TCGA-IB-7651      TCGA-IB-7885 
"NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" 
     TCGA-IB-7886      TCGA-IB-7887      TCGA-IB-7891      TCGA-IB-8126 
"NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" 
     TCGA-IB-8127      TCGA-IB-A5SS      TCGA-IB-A6UG      TCGA-LB-A7SX 
"NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" 
     TCGA-OE-A75W 
"NTAN1 WILD-TYPE" 
D301V10, continuous
[1] "Remove cluster labels:" "NTAN1 MUTATED"         
clus
  NTAN1 MUTATED NTAN1 WILD-TYPE 
              1              18 
     TCGA-FB-A4P6      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" 
     TCGA-H6-8124      TCGA-H8-A6C1      TCGA-IB-7644      TCGA-IB-7649 
"NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" 
     TCGA-IB-7651      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7891 
"NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" 
     TCGA-IB-8126      TCGA-IB-8127      TCGA-IB-A5SS      TCGA-IB-A6UG 
"NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" 
     TCGA-LB-A7SX      TCGA-OE-A75W 
"NTAN1 WILD-TYPE" "NTAN1 WILD-TYPE" 
                 vv
clus              R0 R1 RX
  NTAN1 MUTATED    2  0  1
  NTAN1 WILD-TYPE 40 24  1
D301V11, multiclass
    clus
vv   NTAN1 MUTATED NTAN1 WILD-TYPE
  R0             2              40
  R1             0              24
  RX             1               1
D301V12, continuous

Clustering(302) Variable = PPP1R12C MUTATION ANALYSIS
D302V1, survival
                    sevent
clus2                 0  1
  PPP1R12C MUTATED    2  3
  PPP1R12C WILD-TYPE 38 26
  PPP1R12C MUTATED PPP1R12C WILD-TYPE 
                 5                 64 
  PPP1R12C MUTATED PPP1R12C WILD-TYPE 
                 3                 26 
$`PPP1R12C MUTATED`
TCGA-FB-A545 TCGA-H6-A45N TCGA-HZ-A4BK TCGA-IB-7651 TCGA-IB-7890 
       12.66         7.66         1.51        19.82        19.66 

$`PPP1R12C WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P5 TCGA-FB-A4P6 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR TCGA-FZ-5920 
        0.13        11.93         2.47         0.03         5.46         2.01 
TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 TCGA-H8-A6C1 TCGA-HZ-7289 TCGA-HZ-7918 
       36.20        20.81        12.89        13.02         7.89         0.92 
TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 
        0.66         0.13         0.26        12.13        11.87         0.26 
TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 
        0.62         0.79         0.69         3.95         0.92         0.53 
TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-IB-7644 
        0.16         2.99         0.76         0.95         6.38        11.41 
TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7652 TCGA-IB-7885 
       49.38         4.77        21.90        15.35        15.65        27.98 
TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7891 TCGA-IB-7893 
        4.04         3.62        43.79        15.81        16.04         3.85 
TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ 
       15.98         0.56        17.16        10.82         9.86         7.20 
TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W TCGA-PZ-A5RE 
       15.12         0.26         1.35         4.18         3.62         8.12 
TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
       13.68        16.80        14.14        18.67 

  PPP1R12C MUTATED PPP1R12C WILD-TYPE 
              1.51               0.03 
  PPP1R12C MUTATED PPP1R12C WILD-TYPE 
             19.82              49.38 
  PPP1R12C MUTATED PPP1R12C WILD-TYPE 
             12.66               7.15 
[1] "1.5 - 19.8 (12.7)" "0.0 - 49.4 (7.2)" 
        TCGA-F2-6879         TCGA-F2-6880         TCGA-F2-7273 
"PPP1R12C WILD-TYPE" "PPP1R12C WILD-TYPE" "PPP1R12C WILD-TYPE" 
        TCGA-F2-7276         TCGA-F2-A44G         TCGA-F2-A44H 
"PPP1R12C WILD-TYPE" "PPP1R12C WILD-TYPE" "PPP1R12C WILD-TYPE" 
        TCGA-FB-A4P5         TCGA-FB-A4P6         TCGA-FB-A545 
"PPP1R12C WILD-TYPE" "PPP1R12C WILD-TYPE"   "PPP1R12C MUTATED" 
        TCGA-FB-A5VM         TCGA-FB-A78T         TCGA-FB-A7DR 
"PPP1R12C WILD-TYPE" "PPP1R12C WILD-TYPE" "PPP1R12C WILD-TYPE" 
        TCGA-FZ-5920         TCGA-FZ-5922         TCGA-FZ-5923 
"PPP1R12C WILD-TYPE" "PPP1R12C WILD-TYPE" "PPP1R12C WILD-TYPE" 
        TCGA-H6-8124         TCGA-H6-A45N         TCGA-H8-A6C1 
"PPP1R12C WILD-TYPE"   "PPP1R12C MUTATED" "PPP1R12C WILD-TYPE" 
        TCGA-HZ-7289         TCGA-HZ-7918         TCGA-HZ-7919 
"PPP1R12C WILD-TYPE" "PPP1R12C WILD-TYPE" "PPP1R12C WILD-TYPE" 
        TCGA-HZ-7922         TCGA-HZ-7923         TCGA-HZ-7924 
"PPP1R12C WILD-TYPE" "PPP1R12C WILD-TYPE" "PPP1R12C WILD-TYPE" 
        TCGA-HZ-7925         TCGA-HZ-7926         TCGA-HZ-8001 
"PPP1R12C WILD-TYPE" "PPP1R12C WILD-TYPE" "PPP1R12C WILD-TYPE" 
        TCGA-HZ-8002         TCGA-HZ-8003         TCGA-HZ-8005 
"PPP1R12C WILD-TYPE" "PPP1R12C WILD-TYPE" "PPP1R12C WILD-TYPE" 
        TCGA-HZ-8315         TCGA-HZ-8317         TCGA-HZ-8636 
"PPP1R12C WILD-TYPE" "PPP1R12C WILD-TYPE" "PPP1R12C WILD-TYPE" 
        TCGA-HZ-8638         TCGA-HZ-A49G         TCGA-HZ-A49H 
"PPP1R12C WILD-TYPE" "PPP1R12C WILD-TYPE" "PPP1R12C WILD-TYPE" 
        TCGA-HZ-A4BH         TCGA-HZ-A4BK         TCGA-IB-7644 
"PPP1R12C WILD-TYPE"   "PPP1R12C MUTATED" "PPP1R12C WILD-TYPE" 
        TCGA-IB-7645         TCGA-IB-7646         TCGA-IB-7647 
"PPP1R12C WILD-TYPE" "PPP1R12C WILD-TYPE" "PPP1R12C WILD-TYPE" 
        TCGA-IB-7649         TCGA-IB-7651         TCGA-IB-7652 
"PPP1R12C WILD-TYPE"   "PPP1R12C MUTATED" "PPP1R12C WILD-TYPE" 
        TCGA-IB-7885         TCGA-IB-7886         TCGA-IB-7887 
"PPP1R12C WILD-TYPE" "PPP1R12C WILD-TYPE" "PPP1R12C WILD-TYPE" 
        TCGA-IB-7888         TCGA-IB-7889         TCGA-IB-7890 
"PPP1R12C WILD-TYPE" "PPP1R12C WILD-TYPE"   "PPP1R12C MUTATED" 
        TCGA-IB-7891         TCGA-IB-7893         TCGA-IB-7897 
"PPP1R12C WILD-TYPE" "PPP1R12C WILD-TYPE" "PPP1R12C WILD-TYPE" 
        TCGA-IB-8126         TCGA-IB-8127         TCGA-IB-A5SO 
"PPP1R12C WILD-TYPE" "PPP1R12C WILD-TYPE" "PPP1R12C WILD-TYPE" 
        TCGA-IB-A5SP         TCGA-IB-A5SQ         TCGA-IB-A5SS 
"PPP1R12C WILD-TYPE" "PPP1R12C WILD-TYPE" "PPP1R12C WILD-TYPE" 
        TCGA-IB-A5ST         TCGA-IB-A6UG         TCGA-LB-A7SX 
"PPP1R12C WILD-TYPE" "PPP1R12C WILD-TYPE" "PPP1R12C WILD-TYPE" 
        TCGA-OE-A75W         TCGA-PZ-A5RE         TCGA-Q3-A5QY 
"PPP1R12C WILD-TYPE" "PPP1R12C WILD-TYPE" "PPP1R12C WILD-TYPE" 
        TCGA-US-A779         TCGA-US-A77E         TCGA-US-A77J 
"PPP1R12C WILD-TYPE" "PPP1R12C WILD-TYPE" "PPP1R12C WILD-TYPE" 
        TCGA-F2-6879         TCGA-F2-6880         TCGA-F2-7273 
"PPP1R12C WILD-TYPE" "PPP1R12C WILD-TYPE" "PPP1R12C WILD-TYPE" 
        TCGA-F2-7276         TCGA-F2-A44G         TCGA-F2-A44H 
"PPP1R12C WILD-TYPE" "PPP1R12C WILD-TYPE" "PPP1R12C WILD-TYPE" 
        TCGA-FB-A4P5         TCGA-FB-A4P6         TCGA-FB-A545 
"PPP1R12C WILD-TYPE" "PPP1R12C WILD-TYPE"   "PPP1R12C MUTATED" 
        TCGA-FB-A5VM         TCGA-FB-A78T         TCGA-FB-A7DR 
"PPP1R12C WILD-TYPE" "PPP1R12C WILD-TYPE" "PPP1R12C WILD-TYPE" 
        TCGA-FZ-5920         TCGA-FZ-5922         TCGA-FZ-5923 
"PPP1R12C WILD-TYPE" "PPP1R12C WILD-TYPE" "PPP1R12C WILD-TYPE" 
        TCGA-H6-8124         TCGA-H6-A45N         TCGA-H8-A6C1 
"PPP1R12C WILD-TYPE"   "PPP1R12C MUTATED" "PPP1R12C WILD-TYPE" 
        TCGA-HZ-7289         TCGA-HZ-7918         TCGA-HZ-7919 
"PPP1R12C WILD-TYPE" "PPP1R12C WILD-TYPE" "PPP1R12C WILD-TYPE" 
        TCGA-HZ-7922         TCGA-HZ-7923         TCGA-HZ-7924 
"PPP1R12C WILD-TYPE" "PPP1R12C WILD-TYPE" "PPP1R12C WILD-TYPE" 
        TCGA-HZ-7925         TCGA-HZ-7926         TCGA-HZ-8001 
"PPP1R12C WILD-TYPE" "PPP1R12C WILD-TYPE" "PPP1R12C WILD-TYPE" 
        TCGA-HZ-8002         TCGA-HZ-8003         TCGA-HZ-8005 
"PPP1R12C WILD-TYPE" "PPP1R12C WILD-TYPE" "PPP1R12C WILD-TYPE" 
        TCGA-HZ-8315         TCGA-HZ-8317         TCGA-HZ-8636 
"PPP1R12C WILD-TYPE" "PPP1R12C WILD-TYPE" "PPP1R12C WILD-TYPE" 
        TCGA-HZ-8638         TCGA-HZ-A49G         TCGA-HZ-A49H 
"PPP1R12C WILD-TYPE" "PPP1R12C WILD-TYPE" "PPP1R12C WILD-TYPE" 
        TCGA-HZ-A4BH         TCGA-HZ-A4BK         TCGA-IB-7644 
"PPP1R12C WILD-TYPE"   "PPP1R12C MUTATED" "PPP1R12C WILD-TYPE" 
        TCGA-IB-7645         TCGA-IB-7646         TCGA-IB-7647 
"PPP1R12C WILD-TYPE" "PPP1R12C WILD-TYPE" "PPP1R12C WILD-TYPE" 
        TCGA-IB-7649         TCGA-IB-7651         TCGA-IB-7652 
"PPP1R12C WILD-TYPE"   "PPP1R12C MUTATED" "PPP1R12C WILD-TYPE" 
        TCGA-IB-7885         TCGA-IB-7886         TCGA-IB-7887 
"PPP1R12C WILD-TYPE" "PPP1R12C WILD-TYPE" "PPP1R12C WILD-TYPE" 
        TCGA-IB-7888         TCGA-IB-7889         TCGA-IB-7890 
"PPP1R12C WILD-TYPE" "PPP1R12C WILD-TYPE"   "PPP1R12C MUTATED" 
        TCGA-IB-7891         TCGA-IB-7893         TCGA-IB-7897 
"PPP1R12C WILD-TYPE" "PPP1R12C WILD-TYPE" "PPP1R12C WILD-TYPE" 
        TCGA-IB-8126         TCGA-IB-8127         TCGA-IB-A5SO 
"PPP1R12C WILD-TYPE" "PPP1R12C WILD-TYPE" "PPP1R12C WILD-TYPE" 
        TCGA-IB-A5SP         TCGA-IB-A5SQ         TCGA-IB-A5SS 
"PPP1R12C WILD-TYPE" "PPP1R12C WILD-TYPE" "PPP1R12C WILD-TYPE" 
        TCGA-IB-A5ST         TCGA-IB-A6UG         TCGA-LB-A7SX 
"PPP1R12C WILD-TYPE" "PPP1R12C WILD-TYPE" "PPP1R12C WILD-TYPE" 
        TCGA-OE-A75W         TCGA-PZ-A5RE         TCGA-Q3-A5QY 
"PPP1R12C WILD-TYPE" "PPP1R12C WILD-TYPE" "PPP1R12C WILD-TYPE" 
        TCGA-US-A779         TCGA-US-A77E         TCGA-US-A77J 
"PPP1R12C WILD-TYPE" "PPP1R12C WILD-TYPE" "PPP1R12C WILD-TYPE" 
        TCGA-F2-6879         TCGA-F2-6880         TCGA-F2-7273 
"PPP1R12C WILD-TYPE" "PPP1R12C WILD-TYPE" "PPP1R12C WILD-TYPE" 
        TCGA-F2-7276         TCGA-F2-A44G         TCGA-F2-A44H 
"PPP1R12C WILD-TYPE" "PPP1R12C WILD-TYPE" "PPP1R12C WILD-TYPE" 
        TCGA-FB-A4P5         TCGA-FB-A4P6         TCGA-FB-A545 
"PPP1R12C WILD-TYPE" "PPP1R12C WILD-TYPE"   "PPP1R12C MUTATED" 
        TCGA-FB-A5VM         TCGA-FB-A78T         TCGA-FB-A7DR 
"PPP1R12C WILD-TYPE" "PPP1R12C WILD-TYPE" "PPP1R12C WILD-TYPE" 
        TCGA-FZ-5920         TCGA-FZ-5922         TCGA-FZ-5923 
"PPP1R12C WILD-TYPE" "PPP1R12C WILD-TYPE" "PPP1R12C WILD-TYPE" 
        TCGA-H6-8124         TCGA-H6-A45N         TCGA-H8-A6C1 
"PPP1R12C WILD-TYPE"   "PPP1R12C MUTATED" "PPP1R12C WILD-TYPE" 
        TCGA-HZ-7289         TCGA-HZ-7918         TCGA-HZ-7919 
"PPP1R12C WILD-TYPE" "PPP1R12C WILD-TYPE" "PPP1R12C WILD-TYPE" 
        TCGA-HZ-7922         TCGA-HZ-7923         TCGA-HZ-7924 
"PPP1R12C WILD-TYPE" "PPP1R12C WILD-TYPE" "PPP1R12C WILD-TYPE" 
        TCGA-HZ-7925         TCGA-HZ-7926         TCGA-HZ-8001 
"PPP1R12C WILD-TYPE" "PPP1R12C WILD-TYPE" "PPP1R12C WILD-TYPE" 
        TCGA-HZ-8002         TCGA-HZ-8003         TCGA-HZ-8005 
"PPP1R12C WILD-TYPE" "PPP1R12C WILD-TYPE" "PPP1R12C WILD-TYPE" 
        TCGA-HZ-8315         TCGA-HZ-8317         TCGA-HZ-8636 
"PPP1R12C WILD-TYPE" "PPP1R12C WILD-TYPE" "PPP1R12C WILD-TYPE" 
        TCGA-HZ-8638         TCGA-HZ-A49G         TCGA-HZ-A49H 
"PPP1R12C WILD-TYPE" "PPP1R12C WILD-TYPE" "PPP1R12C WILD-TYPE" 
        TCGA-HZ-A4BH         TCGA-HZ-A4BK         TCGA-IB-7644 
"PPP1R12C WILD-TYPE"   "PPP1R12C MUTATED" "PPP1R12C WILD-TYPE" 
        TCGA-IB-7645         TCGA-IB-7646         TCGA-IB-7647 
"PPP1R12C WILD-TYPE" "PPP1R12C WILD-TYPE" "PPP1R12C WILD-TYPE" 
        TCGA-IB-7649         TCGA-IB-7651         TCGA-IB-7652 
"PPP1R12C WILD-TYPE"   "PPP1R12C MUTATED" "PPP1R12C WILD-TYPE" 
        TCGA-IB-7885         TCGA-IB-7886         TCGA-IB-7887 
"PPP1R12C WILD-TYPE" "PPP1R12C WILD-TYPE" "PPP1R12C WILD-TYPE" 
        TCGA-IB-7888         TCGA-IB-7889         TCGA-IB-7890 
"PPP1R12C WILD-TYPE" "PPP1R12C WILD-TYPE"   "PPP1R12C MUTATED" 
        TCGA-IB-7891         TCGA-IB-7893         TCGA-IB-7897 
"PPP1R12C WILD-TYPE" "PPP1R12C WILD-TYPE" "PPP1R12C WILD-TYPE" 
        TCGA-IB-8126         TCGA-IB-8127         TCGA-IB-A5SO 
"PPP1R12C WILD-TYPE" "PPP1R12C WILD-TYPE" "PPP1R12C WILD-TYPE" 
        TCGA-IB-A5SP         TCGA-IB-A5SQ         TCGA-IB-A5SS 
"PPP1R12C WILD-TYPE" "PPP1R12C WILD-TYPE" "PPP1R12C WILD-TYPE" 
        TCGA-IB-A5ST         TCGA-IB-A6UG         TCGA-LB-A7SX 
"PPP1R12C WILD-TYPE" "PPP1R12C WILD-TYPE" "PPP1R12C WILD-TYPE" 
        TCGA-OE-A75W         TCGA-PZ-A5RE         TCGA-Q3-A5QY 
"PPP1R12C WILD-TYPE" "PPP1R12C WILD-TYPE" "PPP1R12C WILD-TYPE" 
        TCGA-US-A779         TCGA-US-A77E         TCGA-US-A77J 
"PPP1R12C WILD-TYPE" "PPP1R12C WILD-TYPE" "PPP1R12C WILD-TYPE" 
[1] "hr=" "1.1"
D302V2, continuous
                    vv
clus                 STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  PPP1R12C MUTATED          0        1         0         5         0        0
  PPP1R12C WILD-TYPE        1        3        11        46         2        3
D302V3, multiclass
                    vv
clus                 T1+T2 T3+T4
  PPP1R12C MUTATED       1     5
  PPP1R12C WILD-TYPE     5    61
D302V4, multiclass
       clus
vv      PPP1R12C MUTATED PPP1R12C WILD-TYPE
  T1+T2                1                  5
  T3+T4                5                 61
D302V5, binary
                    cls
clus                  0  1
  PPP1R12C MUTATED    1  5
  PPP1R12C WILD-TYPE 16 49
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  PPP1R12C MUTATED      1    5
  PPP1R12C WILD-TYPE   16   49
   clus
vv  PPP1R12C MUTATED PPP1R12C WILD-TYPE
  0                1                 16
  1                5                 49
                    vv
clus                 M0 M1 MX
  PPP1R12C MUTATED    3  0  3
  PPP1R12C WILD-TYPE 36  3 27
D302V6, multiclass
    clus
vv   PPP1R12C MUTATED PPP1R12C WILD-TYPE
  M0                3                 36
  M1                0                  3
  MX                3                 27
D302V7, binary
                    cls
clus                  0  1
  PPP1R12C MUTATED    4  2
  PPP1R12C WILD-TYPE 32 34
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  PPP1R12C MUTATED      4    2
  PPP1R12C WILD-TYPE   32   34
        clus
vv       PPP1R12C MUTATED PPP1R12C WILD-TYPE
  FEMALE                4                 32
  MALE                  2                 34
                    vv
clus                 PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  PPP1R12C MUTATED                                     4
  PPP1R12C WILD-TYPE                                  61
                    vv
clus                 PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  PPP1R12C MUTATED                                       2
  PPP1R12C WILD-TYPE                                     2
                    vv
clus                 PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  PPP1R12C MUTATED                                                  0
  PPP1R12C WILD-TYPE                                                2
D302V8, multiclass
                                                  clus
vv                                                 PPP1R12C MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                             4
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                           2
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                0
                                                  clus
vv                                                 PPP1R12C WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                              61
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                             2
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                  2
D302V9, continuous
[1] "Remove cluster labels:" "PPP1R12C MUTATED"      
clus
  PPP1R12C MUTATED PPP1R12C WILD-TYPE 
                 2                 20 
        TCGA-F2-6880         TCGA-FB-A4P5         TCGA-FB-A4P6 
"PPP1R12C WILD-TYPE" "PPP1R12C WILD-TYPE" "PPP1R12C WILD-TYPE" 
        TCGA-FB-A5VM         TCGA-FB-A78T         TCGA-FB-A7DR 
"PPP1R12C WILD-TYPE" "PPP1R12C WILD-TYPE" "PPP1R12C WILD-TYPE" 
        TCGA-H6-8124         TCGA-H8-A6C1         TCGA-IB-7644 
"PPP1R12C WILD-TYPE" "PPP1R12C WILD-TYPE" "PPP1R12C WILD-TYPE" 
        TCGA-IB-7649         TCGA-IB-7885         TCGA-IB-7886 
"PPP1R12C WILD-TYPE" "PPP1R12C WILD-TYPE" "PPP1R12C WILD-TYPE" 
        TCGA-IB-7887         TCGA-IB-7891         TCGA-IB-8126 
"PPP1R12C WILD-TYPE" "PPP1R12C WILD-TYPE" "PPP1R12C WILD-TYPE" 
        TCGA-IB-8127         TCGA-IB-A5SS         TCGA-IB-A6UG 
"PPP1R12C WILD-TYPE" "PPP1R12C WILD-TYPE" "PPP1R12C WILD-TYPE" 
        TCGA-LB-A7SX         TCGA-OE-A75W 
"PPP1R12C WILD-TYPE" "PPP1R12C WILD-TYPE" 
D302V10, continuous
[1] "Remove cluster labels:" "PPP1R12C MUTATED"      
clus
  PPP1R12C MUTATED PPP1R12C WILD-TYPE 
                 1                 18 
        TCGA-FB-A4P5         TCGA-FB-A4P6         TCGA-FB-A5VM 
"PPP1R12C WILD-TYPE" "PPP1R12C WILD-TYPE" "PPP1R12C WILD-TYPE" 
        TCGA-FB-A78T         TCGA-FB-A7DR         TCGA-H6-8124 
"PPP1R12C WILD-TYPE" "PPP1R12C WILD-TYPE" "PPP1R12C WILD-TYPE" 
        TCGA-H8-A6C1         TCGA-IB-7644         TCGA-IB-7649 
"PPP1R12C WILD-TYPE" "PPP1R12C WILD-TYPE" "PPP1R12C WILD-TYPE" 
        TCGA-IB-7885         TCGA-IB-7886         TCGA-IB-7891 
"PPP1R12C WILD-TYPE" "PPP1R12C WILD-TYPE" "PPP1R12C WILD-TYPE" 
        TCGA-IB-8126         TCGA-IB-8127         TCGA-IB-A5SS 
"PPP1R12C WILD-TYPE" "PPP1R12C WILD-TYPE" "PPP1R12C WILD-TYPE" 
        TCGA-IB-A6UG         TCGA-LB-A7SX         TCGA-OE-A75W 
"PPP1R12C WILD-TYPE" "PPP1R12C WILD-TYPE" "PPP1R12C WILD-TYPE" 
                    vv
clus                 R0 R1 RX
  PPP1R12C MUTATED    3  1  0
  PPP1R12C WILD-TYPE 39 23  2
D302V11, multiclass
    clus
vv   PPP1R12C MUTATED PPP1R12C WILD-TYPE
  R0                3                 39
  R1                1                 23
  RX                0                  2
D302V12, continuous

Clustering(303) Variable = RAI2 MUTATION ANALYSIS
D303V1, survival
                sevent
clus2             0  1
  RAI2 MUTATED    3  0
  RAI2 WILD-TYPE 37 29
  RAI2 MUTATED RAI2 WILD-TYPE 
             3             66 
  RAI2 MUTATED RAI2 WILD-TYPE 
             0             29 
$`RAI2 MUTATED`
TCGA-HZ-8002 TCGA-HZ-8315 TCGA-IB-7885 
        0.79         0.92        27.98 

$`RAI2 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P5 TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR 
        0.13        11.93        12.66         2.47         0.03         5.46 
TCGA-FZ-5920 TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 
        2.01        36.20        20.81        12.89         7.66        13.02 
TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 
        7.89         0.92         0.66         0.13         0.26        12.13 
TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8317 
       11.87         0.26         0.62         0.69         3.95         0.53 
TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK 
        0.16         2.99         0.76         0.95         6.38         1.51 
TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7651 
       11.41        49.38         4.77        21.90        15.35        19.82 
TCGA-IB-7652 TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 
       15.65         4.04         3.62        43.79        15.81        19.66 
TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO 
       16.04         3.85        15.98         0.56        17.16        10.82 
TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX 
        9.86         7.20        15.12         0.26         1.35         4.18 
TCGA-OE-A75W TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
        3.62         8.12        13.68        16.80        14.14        18.67 

  RAI2 MUTATED RAI2 WILD-TYPE 
          0.79           0.03 
  RAI2 MUTATED RAI2 WILD-TYPE 
         27.98          49.38 
  RAI2 MUTATED RAI2 WILD-TYPE 
         0.920          7.775 
[1] "0.8 - 28.0 (0.9)" "0.0 - 49.4 (7.8)"
    TCGA-F2-6879     TCGA-F2-6880     TCGA-F2-7273     TCGA-F2-7276 
"RAI2 WILD-TYPE" "RAI2 WILD-TYPE" "RAI2 WILD-TYPE" "RAI2 WILD-TYPE" 
    TCGA-F2-A44G     TCGA-F2-A44H     TCGA-FB-A4P5     TCGA-FB-A4P6 
"RAI2 WILD-TYPE" "RAI2 WILD-TYPE" "RAI2 WILD-TYPE" "RAI2 WILD-TYPE" 
    TCGA-FB-A545     TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-FB-A7DR 
"RAI2 WILD-TYPE" "RAI2 WILD-TYPE" "RAI2 WILD-TYPE" "RAI2 WILD-TYPE" 
    TCGA-FZ-5920     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-H6-8124 
"RAI2 WILD-TYPE" "RAI2 WILD-TYPE" "RAI2 WILD-TYPE" "RAI2 WILD-TYPE" 
    TCGA-H6-A45N     TCGA-H8-A6C1     TCGA-HZ-7289     TCGA-HZ-7918 
"RAI2 WILD-TYPE" "RAI2 WILD-TYPE" "RAI2 WILD-TYPE" "RAI2 WILD-TYPE" 
    TCGA-HZ-7919     TCGA-HZ-7922     TCGA-HZ-7923     TCGA-HZ-7924 
"RAI2 WILD-TYPE" "RAI2 WILD-TYPE" "RAI2 WILD-TYPE" "RAI2 WILD-TYPE" 
    TCGA-HZ-7925     TCGA-HZ-7926     TCGA-HZ-8001     TCGA-HZ-8002 
"RAI2 WILD-TYPE" "RAI2 WILD-TYPE" "RAI2 WILD-TYPE"   "RAI2 MUTATED" 
    TCGA-HZ-8003     TCGA-HZ-8005     TCGA-HZ-8315     TCGA-HZ-8317 
"RAI2 WILD-TYPE" "RAI2 WILD-TYPE"   "RAI2 MUTATED" "RAI2 WILD-TYPE" 
    TCGA-HZ-8636     TCGA-HZ-8638     TCGA-HZ-A49G     TCGA-HZ-A49H 
"RAI2 WILD-TYPE" "RAI2 WILD-TYPE" "RAI2 WILD-TYPE" "RAI2 WILD-TYPE" 
    TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-IB-7644     TCGA-IB-7645 
"RAI2 WILD-TYPE" "RAI2 WILD-TYPE" "RAI2 WILD-TYPE" "RAI2 WILD-TYPE" 
    TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7651 
"RAI2 WILD-TYPE" "RAI2 WILD-TYPE" "RAI2 WILD-TYPE" "RAI2 WILD-TYPE" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887 
"RAI2 WILD-TYPE"   "RAI2 MUTATED" "RAI2 WILD-TYPE" "RAI2 WILD-TYPE" 
    TCGA-IB-7888     TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891 
"RAI2 WILD-TYPE" "RAI2 WILD-TYPE" "RAI2 WILD-TYPE" "RAI2 WILD-TYPE" 
    TCGA-IB-7893     TCGA-IB-7897     TCGA-IB-8126     TCGA-IB-8127 
"RAI2 WILD-TYPE" "RAI2 WILD-TYPE" "RAI2 WILD-TYPE" "RAI2 WILD-TYPE" 
    TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS 
"RAI2 WILD-TYPE" "RAI2 WILD-TYPE" "RAI2 WILD-TYPE" "RAI2 WILD-TYPE" 
    TCGA-IB-A5ST     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
"RAI2 WILD-TYPE" "RAI2 WILD-TYPE" "RAI2 WILD-TYPE" "RAI2 WILD-TYPE" 
    TCGA-PZ-A5RE     TCGA-Q3-A5QY     TCGA-US-A779     TCGA-US-A77E 
"RAI2 WILD-TYPE" "RAI2 WILD-TYPE" "RAI2 WILD-TYPE" "RAI2 WILD-TYPE" 
    TCGA-US-A77J 
"RAI2 WILD-TYPE" 
    TCGA-F2-6879     TCGA-F2-6880     TCGA-F2-7273     TCGA-F2-7276 
"RAI2 WILD-TYPE" "RAI2 WILD-TYPE" "RAI2 WILD-TYPE" "RAI2 WILD-TYPE" 
    TCGA-F2-A44G     TCGA-F2-A44H     TCGA-FB-A4P5     TCGA-FB-A4P6 
"RAI2 WILD-TYPE" "RAI2 WILD-TYPE" "RAI2 WILD-TYPE" "RAI2 WILD-TYPE" 
    TCGA-FB-A545     TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-FB-A7DR 
"RAI2 WILD-TYPE" "RAI2 WILD-TYPE" "RAI2 WILD-TYPE" "RAI2 WILD-TYPE" 
    TCGA-FZ-5920     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-H6-8124 
"RAI2 WILD-TYPE" "RAI2 WILD-TYPE" "RAI2 WILD-TYPE" "RAI2 WILD-TYPE" 
    TCGA-H6-A45N     TCGA-H8-A6C1     TCGA-HZ-7289     TCGA-HZ-7918 
"RAI2 WILD-TYPE" "RAI2 WILD-TYPE" "RAI2 WILD-TYPE" "RAI2 WILD-TYPE" 
    TCGA-HZ-7919     TCGA-HZ-7922     TCGA-HZ-7923     TCGA-HZ-7924 
"RAI2 WILD-TYPE" "RAI2 WILD-TYPE" "RAI2 WILD-TYPE" "RAI2 WILD-TYPE" 
    TCGA-HZ-7925     TCGA-HZ-7926     TCGA-HZ-8001     TCGA-HZ-8002 
"RAI2 WILD-TYPE" "RAI2 WILD-TYPE" "RAI2 WILD-TYPE"   "RAI2 MUTATED" 
    TCGA-HZ-8003     TCGA-HZ-8005     TCGA-HZ-8315     TCGA-HZ-8317 
"RAI2 WILD-TYPE" "RAI2 WILD-TYPE"   "RAI2 MUTATED" "RAI2 WILD-TYPE" 
    TCGA-HZ-8636     TCGA-HZ-8638     TCGA-HZ-A49G     TCGA-HZ-A49H 
"RAI2 WILD-TYPE" "RAI2 WILD-TYPE" "RAI2 WILD-TYPE" "RAI2 WILD-TYPE" 
    TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-IB-7644     TCGA-IB-7645 
"RAI2 WILD-TYPE" "RAI2 WILD-TYPE" "RAI2 WILD-TYPE" "RAI2 WILD-TYPE" 
    TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7651 
"RAI2 WILD-TYPE" "RAI2 WILD-TYPE" "RAI2 WILD-TYPE" "RAI2 WILD-TYPE" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887 
"RAI2 WILD-TYPE"   "RAI2 MUTATED" "RAI2 WILD-TYPE" "RAI2 WILD-TYPE" 
    TCGA-IB-7888     TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891 
"RAI2 WILD-TYPE" "RAI2 WILD-TYPE" "RAI2 WILD-TYPE" "RAI2 WILD-TYPE" 
    TCGA-IB-7893     TCGA-IB-7897     TCGA-IB-8126     TCGA-IB-8127 
"RAI2 WILD-TYPE" "RAI2 WILD-TYPE" "RAI2 WILD-TYPE" "RAI2 WILD-TYPE" 
    TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS 
"RAI2 WILD-TYPE" "RAI2 WILD-TYPE" "RAI2 WILD-TYPE" "RAI2 WILD-TYPE" 
    TCGA-IB-A5ST     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
"RAI2 WILD-TYPE" "RAI2 WILD-TYPE" "RAI2 WILD-TYPE" "RAI2 WILD-TYPE" 
    TCGA-PZ-A5RE     TCGA-Q3-A5QY     TCGA-US-A779     TCGA-US-A77E 
"RAI2 WILD-TYPE" "RAI2 WILD-TYPE" "RAI2 WILD-TYPE" "RAI2 WILD-TYPE" 
    TCGA-US-A77J 
"RAI2 WILD-TYPE" 
    TCGA-F2-6879     TCGA-F2-6880     TCGA-F2-7273     TCGA-F2-7276 
"RAI2 WILD-TYPE" "RAI2 WILD-TYPE" "RAI2 WILD-TYPE" "RAI2 WILD-TYPE" 
    TCGA-F2-A44G     TCGA-F2-A44H     TCGA-FB-A4P5     TCGA-FB-A4P6 
"RAI2 WILD-TYPE" "RAI2 WILD-TYPE" "RAI2 WILD-TYPE" "RAI2 WILD-TYPE" 
    TCGA-FB-A545     TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-FB-A7DR 
"RAI2 WILD-TYPE" "RAI2 WILD-TYPE" "RAI2 WILD-TYPE" "RAI2 WILD-TYPE" 
    TCGA-FZ-5920     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-H6-8124 
"RAI2 WILD-TYPE" "RAI2 WILD-TYPE" "RAI2 WILD-TYPE" "RAI2 WILD-TYPE" 
    TCGA-H6-A45N     TCGA-H8-A6C1     TCGA-HZ-7289     TCGA-HZ-7918 
"RAI2 WILD-TYPE" "RAI2 WILD-TYPE" "RAI2 WILD-TYPE" "RAI2 WILD-TYPE" 
    TCGA-HZ-7919     TCGA-HZ-7922     TCGA-HZ-7923     TCGA-HZ-7924 
"RAI2 WILD-TYPE" "RAI2 WILD-TYPE" "RAI2 WILD-TYPE" "RAI2 WILD-TYPE" 
    TCGA-HZ-7925     TCGA-HZ-7926     TCGA-HZ-8001     TCGA-HZ-8002 
"RAI2 WILD-TYPE" "RAI2 WILD-TYPE" "RAI2 WILD-TYPE"   "RAI2 MUTATED" 
    TCGA-HZ-8003     TCGA-HZ-8005     TCGA-HZ-8315     TCGA-HZ-8317 
"RAI2 WILD-TYPE" "RAI2 WILD-TYPE"   "RAI2 MUTATED" "RAI2 WILD-TYPE" 
    TCGA-HZ-8636     TCGA-HZ-8638     TCGA-HZ-A49G     TCGA-HZ-A49H 
"RAI2 WILD-TYPE" "RAI2 WILD-TYPE" "RAI2 WILD-TYPE" "RAI2 WILD-TYPE" 
    TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-IB-7644     TCGA-IB-7645 
"RAI2 WILD-TYPE" "RAI2 WILD-TYPE" "RAI2 WILD-TYPE" "RAI2 WILD-TYPE" 
    TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7651 
"RAI2 WILD-TYPE" "RAI2 WILD-TYPE" "RAI2 WILD-TYPE" "RAI2 WILD-TYPE" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887 
"RAI2 WILD-TYPE"   "RAI2 MUTATED" "RAI2 WILD-TYPE" "RAI2 WILD-TYPE" 
    TCGA-IB-7888     TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891 
"RAI2 WILD-TYPE" "RAI2 WILD-TYPE" "RAI2 WILD-TYPE" "RAI2 WILD-TYPE" 
    TCGA-IB-7893     TCGA-IB-7897     TCGA-IB-8126     TCGA-IB-8127 
"RAI2 WILD-TYPE" "RAI2 WILD-TYPE" "RAI2 WILD-TYPE" "RAI2 WILD-TYPE" 
    TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS 
"RAI2 WILD-TYPE" "RAI2 WILD-TYPE" "RAI2 WILD-TYPE" "RAI2 WILD-TYPE" 
    TCGA-IB-A5ST     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
"RAI2 WILD-TYPE" "RAI2 WILD-TYPE" "RAI2 WILD-TYPE" "RAI2 WILD-TYPE" 
    TCGA-PZ-A5RE     TCGA-Q3-A5QY     TCGA-US-A779     TCGA-US-A77E 
"RAI2 WILD-TYPE" "RAI2 WILD-TYPE" "RAI2 WILD-TYPE" "RAI2 WILD-TYPE" 
    TCGA-US-A77J 
"RAI2 WILD-TYPE" 
[1] "hr="     "7.8e+07"
D303V2, continuous
                vv
clus             STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  RAI2 MUTATED          0        0         1         2         0        0
  RAI2 WILD-TYPE        1        4        10        49         2        3
D303V3, multiclass
                vv
clus             T1+T2 T3+T4
  RAI2 MUTATED       0     3
  RAI2 WILD-TYPE     6    63
D303V4, multiclass
       clus
vv      RAI2 MUTATED RAI2 WILD-TYPE
  T1+T2            0              6
  T3+T4            3             63
D303V5, binary
                cls
clus              0  1
  RAI2 MUTATED    1  2
  RAI2 WILD-TYPE 16 52
[1] "tbl2"
                cls
clus             [,1] [,2]
  RAI2 MUTATED      1    2
  RAI2 WILD-TYPE   16   52
   clus
vv  RAI2 MUTATED RAI2 WILD-TYPE
  0            1             16
  1            2             52
                vv
clus             M0 M1 MX
  RAI2 MUTATED    1  0  2
  RAI2 WILD-TYPE 38  3 28
D303V6, multiclass
    clus
vv   RAI2 MUTATED RAI2 WILD-TYPE
  M0            1             38
  M1            0              3
  MX            2             28
D303V7, binary
                cls
clus              0  1
  RAI2 MUTATED    2  1
  RAI2 WILD-TYPE 34 35
[1] "tbl2"
                cls
clus             [,1] [,2]
  RAI2 MUTATED      2    1
  RAI2 WILD-TYPE   34   35
        clus
vv       RAI2 MUTATED RAI2 WILD-TYPE
  FEMALE            2             34
  MALE              1             35
                vv
clus             PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  RAI2 MUTATED                                     3
  RAI2 WILD-TYPE                                  62
                vv
clus             PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  RAI2 MUTATED                                       0
  RAI2 WILD-TYPE                                     4
                vv
clus             PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  RAI2 MUTATED                                                  0
  RAI2 WILD-TYPE                                                2
D303V8, multiclass
                                                  clus
vv                                                 RAI2 MUTATED RAI2 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                         3             62
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                       0              4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA            0              2
D303V9, continuous
[1] "Remove cluster labels:" "RAI2 MUTATED"          
clus
  RAI2 MUTATED RAI2 WILD-TYPE 
             1             21 
    TCGA-F2-6880     TCGA-FB-A4P5     TCGA-FB-A4P6     TCGA-FB-A5VM 
"RAI2 WILD-TYPE" "RAI2 WILD-TYPE" "RAI2 WILD-TYPE" "RAI2 WILD-TYPE" 
    TCGA-FB-A78T     TCGA-FB-A7DR     TCGA-H6-8124     TCGA-H6-A45N 
"RAI2 WILD-TYPE" "RAI2 WILD-TYPE" "RAI2 WILD-TYPE" "RAI2 WILD-TYPE" 
    TCGA-H8-A6C1     TCGA-IB-7644     TCGA-IB-7649     TCGA-IB-7651 
"RAI2 WILD-TYPE" "RAI2 WILD-TYPE" "RAI2 WILD-TYPE" "RAI2 WILD-TYPE" 
    TCGA-IB-7886     TCGA-IB-7887     TCGA-IB-7891     TCGA-IB-8126 
"RAI2 WILD-TYPE" "RAI2 WILD-TYPE" "RAI2 WILD-TYPE" "RAI2 WILD-TYPE" 
    TCGA-IB-8127     TCGA-IB-A5SS     TCGA-IB-A6UG     TCGA-LB-A7SX 
"RAI2 WILD-TYPE" "RAI2 WILD-TYPE" "RAI2 WILD-TYPE" "RAI2 WILD-TYPE" 
    TCGA-OE-A75W 
"RAI2 WILD-TYPE" 
D303V10, continuous
[1] "Remove cluster labels:" "RAI2 MUTATED"          
clus
  RAI2 MUTATED RAI2 WILD-TYPE 
             1             18 
    TCGA-FB-A4P5     TCGA-FB-A4P6     TCGA-FB-A5VM     TCGA-FB-A78T 
"RAI2 WILD-TYPE" "RAI2 WILD-TYPE" "RAI2 WILD-TYPE" "RAI2 WILD-TYPE" 
    TCGA-FB-A7DR     TCGA-H6-8124     TCGA-H8-A6C1     TCGA-IB-7644 
"RAI2 WILD-TYPE" "RAI2 WILD-TYPE" "RAI2 WILD-TYPE" "RAI2 WILD-TYPE" 
    TCGA-IB-7649     TCGA-IB-7651     TCGA-IB-7886     TCGA-IB-7891 
"RAI2 WILD-TYPE" "RAI2 WILD-TYPE" "RAI2 WILD-TYPE" "RAI2 WILD-TYPE" 
    TCGA-IB-8126     TCGA-IB-8127     TCGA-IB-A5SS     TCGA-IB-A6UG 
"RAI2 WILD-TYPE" "RAI2 WILD-TYPE" "RAI2 WILD-TYPE" "RAI2 WILD-TYPE" 
    TCGA-LB-A7SX     TCGA-OE-A75W 
"RAI2 WILD-TYPE" "RAI2 WILD-TYPE" 
                vv
clus             R0 R1 RX
  RAI2 MUTATED    2  1  0
  RAI2 WILD-TYPE 40 23  2
D303V11, multiclass
    clus
vv   RAI2 MUTATED RAI2 WILD-TYPE
  R0            2             40
  R1            1             23
  RX            0              2
D303V12, continuous

Clustering(304) Variable = SLAIN1 MUTATION ANALYSIS
D304V1, survival
                  sevent
clus2               0  1
  SLAIN1 MUTATED    2  1
  SLAIN1 WILD-TYPE 38 28
  SLAIN1 MUTATED SLAIN1 WILD-TYPE 
               3               66 
  SLAIN1 MUTATED SLAIN1 WILD-TYPE 
               1               28 
$`SLAIN1 MUTATED`
TCGA-HZ-8003 TCGA-HZ-A49G TCGA-IB-7651 
        0.69         0.76        19.82 

$`SLAIN1 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P5 TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR 
        0.13        11.93        12.66         2.47         0.03         5.46 
TCGA-FZ-5920 TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 
        2.01        36.20        20.81        12.89         7.66        13.02 
TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 
        7.89         0.92         0.66         0.13         0.26        12.13 
TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8005 TCGA-HZ-8315 
       11.87         0.26         0.62         0.79         3.95         0.92 
TCGA-HZ-8317 TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK 
        0.53         0.16         2.99         0.95         6.38         1.51 
TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7652 
       11.41        49.38         4.77        21.90        15.35        15.65 
TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 
       27.98         4.04         3.62        43.79        15.81        19.66 
TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO 
       16.04         3.85        15.98         0.56        17.16        10.82 
TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX 
        9.86         7.20        15.12         0.26         1.35         4.18 
TCGA-OE-A75W TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
        3.62         8.12        13.68        16.80        14.14        18.67 

  SLAIN1 MUTATED SLAIN1 WILD-TYPE 
            0.69             0.03 
  SLAIN1 MUTATED SLAIN1 WILD-TYPE 
           19.82            49.38 
  SLAIN1 MUTATED SLAIN1 WILD-TYPE 
           0.760            7.775 
[1] "0.7 - 19.8 (0.8)" "0.0 - 49.4 (7.8)"
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
"SLAIN1 WILD-TYPE" "SLAIN1 WILD-TYPE" "SLAIN1 WILD-TYPE" "SLAIN1 WILD-TYPE" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"SLAIN1 WILD-TYPE" "SLAIN1 WILD-TYPE" "SLAIN1 WILD-TYPE" "SLAIN1 WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
"SLAIN1 WILD-TYPE" "SLAIN1 WILD-TYPE" "SLAIN1 WILD-TYPE" "SLAIN1 WILD-TYPE" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"SLAIN1 WILD-TYPE" "SLAIN1 WILD-TYPE" "SLAIN1 WILD-TYPE" "SLAIN1 WILD-TYPE" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
"SLAIN1 WILD-TYPE" "SLAIN1 WILD-TYPE" "SLAIN1 WILD-TYPE" "SLAIN1 WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
"SLAIN1 WILD-TYPE" "SLAIN1 WILD-TYPE" "SLAIN1 WILD-TYPE" "SLAIN1 WILD-TYPE" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"SLAIN1 WILD-TYPE" "SLAIN1 WILD-TYPE" "SLAIN1 WILD-TYPE" "SLAIN1 WILD-TYPE" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
  "SLAIN1 MUTATED" "SLAIN1 WILD-TYPE" "SLAIN1 WILD-TYPE" "SLAIN1 WILD-TYPE" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
"SLAIN1 WILD-TYPE" "SLAIN1 WILD-TYPE"   "SLAIN1 MUTATED" "SLAIN1 WILD-TYPE" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
"SLAIN1 WILD-TYPE" "SLAIN1 WILD-TYPE" "SLAIN1 WILD-TYPE" "SLAIN1 WILD-TYPE" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
"SLAIN1 WILD-TYPE" "SLAIN1 WILD-TYPE" "SLAIN1 WILD-TYPE"   "SLAIN1 MUTATED" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
"SLAIN1 WILD-TYPE" "SLAIN1 WILD-TYPE" "SLAIN1 WILD-TYPE" "SLAIN1 WILD-TYPE" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
"SLAIN1 WILD-TYPE" "SLAIN1 WILD-TYPE" "SLAIN1 WILD-TYPE" "SLAIN1 WILD-TYPE" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
"SLAIN1 WILD-TYPE" "SLAIN1 WILD-TYPE" "SLAIN1 WILD-TYPE" "SLAIN1 WILD-TYPE" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"SLAIN1 WILD-TYPE" "SLAIN1 WILD-TYPE" "SLAIN1 WILD-TYPE" "SLAIN1 WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"SLAIN1 WILD-TYPE" "SLAIN1 WILD-TYPE" "SLAIN1 WILD-TYPE" "SLAIN1 WILD-TYPE" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
"SLAIN1 WILD-TYPE" "SLAIN1 WILD-TYPE" "SLAIN1 WILD-TYPE" "SLAIN1 WILD-TYPE" 
      TCGA-US-A77J 
"SLAIN1 WILD-TYPE" 
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
"SLAIN1 WILD-TYPE" "SLAIN1 WILD-TYPE" "SLAIN1 WILD-TYPE" "SLAIN1 WILD-TYPE" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"SLAIN1 WILD-TYPE" "SLAIN1 WILD-TYPE" "SLAIN1 WILD-TYPE" "SLAIN1 WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
"SLAIN1 WILD-TYPE" "SLAIN1 WILD-TYPE" "SLAIN1 WILD-TYPE" "SLAIN1 WILD-TYPE" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"SLAIN1 WILD-TYPE" "SLAIN1 WILD-TYPE" "SLAIN1 WILD-TYPE" "SLAIN1 WILD-TYPE" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
"SLAIN1 WILD-TYPE" "SLAIN1 WILD-TYPE" "SLAIN1 WILD-TYPE" "SLAIN1 WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
"SLAIN1 WILD-TYPE" "SLAIN1 WILD-TYPE" "SLAIN1 WILD-TYPE" "SLAIN1 WILD-TYPE" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"SLAIN1 WILD-TYPE" "SLAIN1 WILD-TYPE" "SLAIN1 WILD-TYPE" "SLAIN1 WILD-TYPE" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
  "SLAIN1 MUTATED" "SLAIN1 WILD-TYPE" "SLAIN1 WILD-TYPE" "SLAIN1 WILD-TYPE" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
"SLAIN1 WILD-TYPE" "SLAIN1 WILD-TYPE"   "SLAIN1 MUTATED" "SLAIN1 WILD-TYPE" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
"SLAIN1 WILD-TYPE" "SLAIN1 WILD-TYPE" "SLAIN1 WILD-TYPE" "SLAIN1 WILD-TYPE" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
"SLAIN1 WILD-TYPE" "SLAIN1 WILD-TYPE" "SLAIN1 WILD-TYPE"   "SLAIN1 MUTATED" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
"SLAIN1 WILD-TYPE" "SLAIN1 WILD-TYPE" "SLAIN1 WILD-TYPE" "SLAIN1 WILD-TYPE" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
"SLAIN1 WILD-TYPE" "SLAIN1 WILD-TYPE" "SLAIN1 WILD-TYPE" "SLAIN1 WILD-TYPE" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
"SLAIN1 WILD-TYPE" "SLAIN1 WILD-TYPE" "SLAIN1 WILD-TYPE" "SLAIN1 WILD-TYPE" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"SLAIN1 WILD-TYPE" "SLAIN1 WILD-TYPE" "SLAIN1 WILD-TYPE" "SLAIN1 WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"SLAIN1 WILD-TYPE" "SLAIN1 WILD-TYPE" "SLAIN1 WILD-TYPE" "SLAIN1 WILD-TYPE" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
"SLAIN1 WILD-TYPE" "SLAIN1 WILD-TYPE" "SLAIN1 WILD-TYPE" "SLAIN1 WILD-TYPE" 
      TCGA-US-A77J 
"SLAIN1 WILD-TYPE" 
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
"SLAIN1 WILD-TYPE" "SLAIN1 WILD-TYPE" "SLAIN1 WILD-TYPE" "SLAIN1 WILD-TYPE" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"SLAIN1 WILD-TYPE" "SLAIN1 WILD-TYPE" "SLAIN1 WILD-TYPE" "SLAIN1 WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
"SLAIN1 WILD-TYPE" "SLAIN1 WILD-TYPE" "SLAIN1 WILD-TYPE" "SLAIN1 WILD-TYPE" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"SLAIN1 WILD-TYPE" "SLAIN1 WILD-TYPE" "SLAIN1 WILD-TYPE" "SLAIN1 WILD-TYPE" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
"SLAIN1 WILD-TYPE" "SLAIN1 WILD-TYPE" "SLAIN1 WILD-TYPE" "SLAIN1 WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
"SLAIN1 WILD-TYPE" "SLAIN1 WILD-TYPE" "SLAIN1 WILD-TYPE" "SLAIN1 WILD-TYPE" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"SLAIN1 WILD-TYPE" "SLAIN1 WILD-TYPE" "SLAIN1 WILD-TYPE" "SLAIN1 WILD-TYPE" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
  "SLAIN1 MUTATED" "SLAIN1 WILD-TYPE" "SLAIN1 WILD-TYPE" "SLAIN1 WILD-TYPE" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
"SLAIN1 WILD-TYPE" "SLAIN1 WILD-TYPE"   "SLAIN1 MUTATED" "SLAIN1 WILD-TYPE" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
"SLAIN1 WILD-TYPE" "SLAIN1 WILD-TYPE" "SLAIN1 WILD-TYPE" "SLAIN1 WILD-TYPE" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
"SLAIN1 WILD-TYPE" "SLAIN1 WILD-TYPE" "SLAIN1 WILD-TYPE"   "SLAIN1 MUTATED" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
"SLAIN1 WILD-TYPE" "SLAIN1 WILD-TYPE" "SLAIN1 WILD-TYPE" "SLAIN1 WILD-TYPE" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
"SLAIN1 WILD-TYPE" "SLAIN1 WILD-TYPE" "SLAIN1 WILD-TYPE" "SLAIN1 WILD-TYPE" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
"SLAIN1 WILD-TYPE" "SLAIN1 WILD-TYPE" "SLAIN1 WILD-TYPE" "SLAIN1 WILD-TYPE" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"SLAIN1 WILD-TYPE" "SLAIN1 WILD-TYPE" "SLAIN1 WILD-TYPE" "SLAIN1 WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"SLAIN1 WILD-TYPE" "SLAIN1 WILD-TYPE" "SLAIN1 WILD-TYPE" "SLAIN1 WILD-TYPE" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
"SLAIN1 WILD-TYPE" "SLAIN1 WILD-TYPE" "SLAIN1 WILD-TYPE" "SLAIN1 WILD-TYPE" 
      TCGA-US-A77J 
"SLAIN1 WILD-TYPE" 
[1] "hr=" "1.2"
D304V2, continuous
                  vv
clus               STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  SLAIN1 MUTATED          0        0         0         3         0        0
  SLAIN1 WILD-TYPE        1        4        11        48         2        3
D304V3, multiclass
                  vv
clus               T1+T2 T3+T4
  SLAIN1 MUTATED       1     2
  SLAIN1 WILD-TYPE     5    64
D304V4, multiclass
       clus
vv      SLAIN1 MUTATED SLAIN1 WILD-TYPE
  T1+T2              1                5
  T3+T4              2               64
D304V5, binary
                  cls
clus                0  1
  SLAIN1 MUTATED    0  3
  SLAIN1 WILD-TYPE 17 51
[1] "tbl2"
                  cls
clus               [,1] [,2]
  SLAIN1 MUTATED      0    3
  SLAIN1 WILD-TYPE   17   51
   clus
vv  SLAIN1 MUTATED SLAIN1 WILD-TYPE
  0              0               17
  1              3               51
                  vv
clus               M0 M1 MX
  SLAIN1 MUTATED    1  0  2
  SLAIN1 WILD-TYPE 38  3 28
D304V6, multiclass
    clus
vv   SLAIN1 MUTATED SLAIN1 WILD-TYPE
  M0              1               38
  M1              0                3
  MX              2               28
D304V7, binary
                  cls
clus                0  1
  SLAIN1 MUTATED    3  0
  SLAIN1 WILD-TYPE 33 36
[1] "tbl2"
                  cls
clus               [,1] [,2]
  SLAIN1 MUTATED      3    0
  SLAIN1 WILD-TYPE   33   36
        clus
vv       SLAIN1 MUTATED SLAIN1 WILD-TYPE
  FEMALE              3               33
  MALE                0               36
                  vv
clus               PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  SLAIN1 MUTATED                                     3
  SLAIN1 WILD-TYPE                                  62
                  vv
clus               PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  SLAIN1 MUTATED                                       0
  SLAIN1 WILD-TYPE                                     4
                  vv
clus               PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  SLAIN1 MUTATED                                                  0
  SLAIN1 WILD-TYPE                                                2
D304V8, multiclass
                                                  clus
vv                                                 SLAIN1 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                           3
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                         0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA              0
                                                  clus
vv                                                 SLAIN1 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                            62
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                           4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                2
D304V9, continuous
[1] "Remove cluster labels:" "SLAIN1 MUTATED"        
clus
  SLAIN1 MUTATED SLAIN1 WILD-TYPE 
               1               21 
      TCGA-F2-6880       TCGA-FB-A4P5       TCGA-FB-A4P6       TCGA-FB-A5VM 
"SLAIN1 WILD-TYPE" "SLAIN1 WILD-TYPE" "SLAIN1 WILD-TYPE" "SLAIN1 WILD-TYPE" 
      TCGA-FB-A78T       TCGA-FB-A7DR       TCGA-H6-8124       TCGA-H6-A45N 
"SLAIN1 WILD-TYPE" "SLAIN1 WILD-TYPE" "SLAIN1 WILD-TYPE" "SLAIN1 WILD-TYPE" 
      TCGA-H8-A6C1       TCGA-IB-7644       TCGA-IB-7649       TCGA-IB-7885 
"SLAIN1 WILD-TYPE" "SLAIN1 WILD-TYPE" "SLAIN1 WILD-TYPE" "SLAIN1 WILD-TYPE" 
      TCGA-IB-7886       TCGA-IB-7887       TCGA-IB-7891       TCGA-IB-8126 
"SLAIN1 WILD-TYPE" "SLAIN1 WILD-TYPE" "SLAIN1 WILD-TYPE" "SLAIN1 WILD-TYPE" 
      TCGA-IB-8127       TCGA-IB-A5SS       TCGA-IB-A6UG       TCGA-LB-A7SX 
"SLAIN1 WILD-TYPE" "SLAIN1 WILD-TYPE" "SLAIN1 WILD-TYPE" "SLAIN1 WILD-TYPE" 
      TCGA-OE-A75W 
"SLAIN1 WILD-TYPE" 
D304V10, continuous
[1] "Remove cluster labels:" "SLAIN1 MUTATED"        
clus
  SLAIN1 MUTATED SLAIN1 WILD-TYPE 
               1               18 
      TCGA-FB-A4P5       TCGA-FB-A4P6       TCGA-FB-A5VM       TCGA-FB-A78T 
"SLAIN1 WILD-TYPE" "SLAIN1 WILD-TYPE" "SLAIN1 WILD-TYPE" "SLAIN1 WILD-TYPE" 
      TCGA-FB-A7DR       TCGA-H6-8124       TCGA-H8-A6C1       TCGA-IB-7644 
"SLAIN1 WILD-TYPE" "SLAIN1 WILD-TYPE" "SLAIN1 WILD-TYPE" "SLAIN1 WILD-TYPE" 
      TCGA-IB-7649       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7891 
"SLAIN1 WILD-TYPE" "SLAIN1 WILD-TYPE" "SLAIN1 WILD-TYPE" "SLAIN1 WILD-TYPE" 
      TCGA-IB-8126       TCGA-IB-8127       TCGA-IB-A5SS       TCGA-IB-A6UG 
"SLAIN1 WILD-TYPE" "SLAIN1 WILD-TYPE" "SLAIN1 WILD-TYPE" "SLAIN1 WILD-TYPE" 
      TCGA-LB-A7SX       TCGA-OE-A75W 
"SLAIN1 WILD-TYPE" "SLAIN1 WILD-TYPE" 
                  vv
clus               R0 R1 RX
  SLAIN1 MUTATED    2  1  0
  SLAIN1 WILD-TYPE 40 23  2
D304V11, multiclass
    clus
vv   SLAIN1 MUTATED SLAIN1 WILD-TYPE
  R0              2               40
  R1              1               23
  RX              0                2
D304V12, continuous

Clustering(305) Variable = ACVR2A MUTATION ANALYSIS
D305V1, survival
                  sevent
clus2               0  1
  ACVR2A MUTATED    3  2
  ACVR2A WILD-TYPE 37 27
  ACVR2A MUTATED ACVR2A WILD-TYPE 
               5               64 
  ACVR2A MUTATED ACVR2A WILD-TYPE 
               2               27 
$`ACVR2A MUTATED`
TCGA-F2-A44H TCGA-HZ-8315 TCGA-HZ-A4BH TCGA-IB-7651 TCGA-IB-7889 
       19.27         0.92         6.38        19.82        15.81 

$`ACVR2A WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-FB-A4P5 
       10.98         9.70        11.84         7.10         5.03         0.13 
TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR TCGA-FZ-5920 
       11.93        12.66         2.47         0.03         5.46         2.01 
TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7289 
       36.20        20.81        12.89         7.66        13.02         7.89 
TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 
        0.92         0.66         0.13         0.26        12.13        11.87 
TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8317 
        0.26         0.62         0.79         0.69         3.95         0.53 
TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BK TCGA-IB-7644 
        0.16         2.99         0.76         0.95         1.51        11.41 
TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7652 TCGA-IB-7885 
       49.38         4.77        21.90        15.35        15.65        27.98 
TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-7893 
        4.04         3.62        43.79        19.66        16.04         3.85 
TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ 
       15.98         0.56        17.16        10.82         9.86         7.20 
TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W TCGA-PZ-A5RE 
       15.12         0.26         1.35         4.18         3.62         8.12 
TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
       13.68        16.80        14.14        18.67 

  ACVR2A MUTATED ACVR2A WILD-TYPE 
            0.92             0.03 
  ACVR2A MUTATED ACVR2A WILD-TYPE 
           19.82            49.38 
  ACVR2A MUTATED ACVR2A WILD-TYPE 
           15.81             7.43 
[1] "0.9 - 19.8 (15.8)" "0.0 - 49.4 (7.4)" 
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"ACVR2A WILD-TYPE"   "ACVR2A MUTATED" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE"   "ACVR2A MUTATED" "ACVR2A WILD-TYPE" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
  "ACVR2A MUTATED" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE"   "ACVR2A MUTATED" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
"ACVR2A WILD-TYPE"   "ACVR2A MUTATED" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-US-A77J 
"ACVR2A WILD-TYPE" 
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"ACVR2A WILD-TYPE"   "ACVR2A MUTATED" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE"   "ACVR2A MUTATED" "ACVR2A WILD-TYPE" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
  "ACVR2A MUTATED" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE"   "ACVR2A MUTATED" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
"ACVR2A WILD-TYPE"   "ACVR2A MUTATED" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-US-A77J 
"ACVR2A WILD-TYPE" 
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"ACVR2A WILD-TYPE"   "ACVR2A MUTATED" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE"   "ACVR2A MUTATED" "ACVR2A WILD-TYPE" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
  "ACVR2A MUTATED" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE"   "ACVR2A MUTATED" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
"ACVR2A WILD-TYPE"   "ACVR2A MUTATED" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-US-A77J 
"ACVR2A WILD-TYPE" 
[1] "hr=" "1.5"
D305V2, continuous
                  vv
clus               STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  ACVR2A MUTATED          0        0         2         3         0        0
  ACVR2A WILD-TYPE        1        4         9        48         2        3
D305V3, multiclass
                  vv
clus               T1+T2 T3+T4
  ACVR2A MUTATED       0     5
  ACVR2A WILD-TYPE     6    61
D305V4, multiclass
       clus
vv      ACVR2A MUTATED ACVR2A WILD-TYPE
  T1+T2              0                6
  T3+T4              5               61
D305V5, binary
                  cls
clus                0  1
  ACVR2A MUTATED    2  3
  ACVR2A WILD-TYPE 15 51
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ACVR2A MUTATED      2    3
  ACVR2A WILD-TYPE   15   51
   clus
vv  ACVR2A MUTATED ACVR2A WILD-TYPE
  0              2               15
  1              3               51
                  vv
clus               M0 M1 MX
  ACVR2A MUTATED    3  0  2
  ACVR2A WILD-TYPE 36  3 28
D305V6, multiclass
    clus
vv   ACVR2A MUTATED ACVR2A WILD-TYPE
  M0              3               36
  M1              0                3
  MX              2               28
D305V7, binary
                  cls
clus                0  1
  ACVR2A MUTATED    3  2
  ACVR2A WILD-TYPE 33 34
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ACVR2A MUTATED      3    2
  ACVR2A WILD-TYPE   33   34
        clus
vv       ACVR2A MUTATED ACVR2A WILD-TYPE
  FEMALE              3               33
  MALE                2               34
                  vv
clus               PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  ACVR2A MUTATED                                     5
  ACVR2A WILD-TYPE                                  60
                  vv
clus               PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  ACVR2A MUTATED                                       0
  ACVR2A WILD-TYPE                                     4
                  vv
clus               PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  ACVR2A MUTATED                                                  0
  ACVR2A WILD-TYPE                                                2
D305V8, multiclass
                                                  clus
vv                                                 ACVR2A MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                           5
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                         0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA              0
                                                  clus
vv                                                 ACVR2A WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                            60
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                           4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                2
D305V9, continuous
[1] "Remove cluster labels:" "ACVR2A MUTATED"        
clus
  ACVR2A MUTATED ACVR2A WILD-TYPE 
               1               21 
      TCGA-F2-6880       TCGA-FB-A4P5       TCGA-FB-A4P6       TCGA-FB-A5VM 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-FB-A78T       TCGA-FB-A7DR       TCGA-H6-8124       TCGA-H6-A45N 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-H8-A6C1       TCGA-IB-7644       TCGA-IB-7649       TCGA-IB-7885 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-IB-7886       TCGA-IB-7887       TCGA-IB-7891       TCGA-IB-8126 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-IB-8127       TCGA-IB-A5SS       TCGA-IB-A6UG       TCGA-LB-A7SX 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-OE-A75W 
"ACVR2A WILD-TYPE" 
D305V10, continuous
[1] "Remove cluster labels:" "ACVR2A MUTATED"        
clus
  ACVR2A MUTATED ACVR2A WILD-TYPE 
               1               18 
      TCGA-FB-A4P5       TCGA-FB-A4P6       TCGA-FB-A5VM       TCGA-FB-A78T 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-FB-A7DR       TCGA-H6-8124       TCGA-H8-A6C1       TCGA-IB-7644 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-IB-7649       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7891 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-IB-8126       TCGA-IB-8127       TCGA-IB-A5SS       TCGA-IB-A6UG 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-LB-A7SX       TCGA-OE-A75W 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
                  vv
clus               R0 R1 RX
  ACVR2A MUTATED    3  2  0
  ACVR2A WILD-TYPE 39 22  2
D305V11, multiclass
    clus
vv   ACVR2A MUTATED ACVR2A WILD-TYPE
  R0              3               39
  R1              2               22
  RX              0                2
D305V12, continuous

Clustering(306) Variable = NTF3 MUTATION ANALYSIS
D306V1, survival
                sevent
clus2             0  1
  NTF3 MUTATED    5  1
  NTF3 WILD-TYPE 35 28
  NTF3 MUTATED NTF3 WILD-TYPE 
             6             63 
  NTF3 MUTATED NTF3 WILD-TYPE 
             1             28 
$`NTF3 MUTATED`
TCGA-F2-A44H TCGA-FB-A4P6 TCGA-HZ-A49H TCGA-IB-7652 TCGA-IB-7890 TCGA-OE-A75W 
       19.27        11.93         0.95        15.65        19.66         3.62 

$`NTF3 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-FB-A4P5 
       10.98         9.70        11.84         7.10         5.03         0.13 
TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR TCGA-FZ-5920 TCGA-FZ-5922 
       12.66         2.47         0.03         5.46         2.01        36.20 
TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7289 TCGA-HZ-7918 
       20.81        12.89         7.66        13.02         7.89         0.92 
TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 
        0.66         0.13         0.26        12.13        11.87         0.26 
TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 
        0.62         0.79         0.69         3.95         0.92         0.53 
TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 
        0.16         2.99         0.76         6.38         1.51        11.41 
TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7651 TCGA-IB-7885 
       49.38         4.77        21.90        15.35        19.82        27.98 
TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7891 TCGA-IB-7893 
        4.04         3.62        43.79        15.81        16.04         3.85 
TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ 
       15.98         0.56        17.16        10.82         9.86         7.20 
TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX TCGA-PZ-A5RE TCGA-Q3-A5QY 
       15.12         0.26         1.35         4.18         8.12        13.68 
TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
       16.80        14.14        18.67 

  NTF3 MUTATED NTF3 WILD-TYPE 
          0.95           0.03 
  NTF3 MUTATED NTF3 WILD-TYPE 
         19.66          49.38 
  NTF3 MUTATED NTF3 WILD-TYPE 
         13.79           7.20 
[1] "0.9 - 19.7 (13.8)" "0.0 - 49.4 (7.2)" 
    TCGA-F2-6879     TCGA-F2-6880     TCGA-F2-7273     TCGA-F2-7276 
"NTF3 WILD-TYPE" "NTF3 WILD-TYPE" "NTF3 WILD-TYPE" "NTF3 WILD-TYPE" 
    TCGA-F2-A44G     TCGA-F2-A44H     TCGA-FB-A4P5     TCGA-FB-A4P6 
"NTF3 WILD-TYPE"   "NTF3 MUTATED" "NTF3 WILD-TYPE"   "NTF3 MUTATED" 
    TCGA-FB-A545     TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-FB-A7DR 
"NTF3 WILD-TYPE" "NTF3 WILD-TYPE" "NTF3 WILD-TYPE" "NTF3 WILD-TYPE" 
    TCGA-FZ-5920     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-H6-8124 
"NTF3 WILD-TYPE" "NTF3 WILD-TYPE" "NTF3 WILD-TYPE" "NTF3 WILD-TYPE" 
    TCGA-H6-A45N     TCGA-H8-A6C1     TCGA-HZ-7289     TCGA-HZ-7918 
"NTF3 WILD-TYPE" "NTF3 WILD-TYPE" "NTF3 WILD-TYPE" "NTF3 WILD-TYPE" 
    TCGA-HZ-7919     TCGA-HZ-7922     TCGA-HZ-7923     TCGA-HZ-7924 
"NTF3 WILD-TYPE" "NTF3 WILD-TYPE" "NTF3 WILD-TYPE" "NTF3 WILD-TYPE" 
    TCGA-HZ-7925     TCGA-HZ-7926     TCGA-HZ-8001     TCGA-HZ-8002 
"NTF3 WILD-TYPE" "NTF3 WILD-TYPE" "NTF3 WILD-TYPE" "NTF3 WILD-TYPE" 
    TCGA-HZ-8003     TCGA-HZ-8005     TCGA-HZ-8315     TCGA-HZ-8317 
"NTF3 WILD-TYPE" "NTF3 WILD-TYPE" "NTF3 WILD-TYPE" "NTF3 WILD-TYPE" 
    TCGA-HZ-8636     TCGA-HZ-8638     TCGA-HZ-A49G     TCGA-HZ-A49H 
"NTF3 WILD-TYPE" "NTF3 WILD-TYPE" "NTF3 WILD-TYPE"   "NTF3 MUTATED" 
    TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-IB-7644     TCGA-IB-7645 
"NTF3 WILD-TYPE" "NTF3 WILD-TYPE" "NTF3 WILD-TYPE" "NTF3 WILD-TYPE" 
    TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7651 
"NTF3 WILD-TYPE" "NTF3 WILD-TYPE" "NTF3 WILD-TYPE" "NTF3 WILD-TYPE" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887 
  "NTF3 MUTATED" "NTF3 WILD-TYPE" "NTF3 WILD-TYPE" "NTF3 WILD-TYPE" 
    TCGA-IB-7888     TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891 
"NTF3 WILD-TYPE" "NTF3 WILD-TYPE"   "NTF3 MUTATED" "NTF3 WILD-TYPE" 
    TCGA-IB-7893     TCGA-IB-7897     TCGA-IB-8126     TCGA-IB-8127 
"NTF3 WILD-TYPE" "NTF3 WILD-TYPE" "NTF3 WILD-TYPE" "NTF3 WILD-TYPE" 
    TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS 
"NTF3 WILD-TYPE" "NTF3 WILD-TYPE" "NTF3 WILD-TYPE" "NTF3 WILD-TYPE" 
    TCGA-IB-A5ST     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
"NTF3 WILD-TYPE" "NTF3 WILD-TYPE" "NTF3 WILD-TYPE"   "NTF3 MUTATED" 
    TCGA-PZ-A5RE     TCGA-Q3-A5QY     TCGA-US-A779     TCGA-US-A77E 
"NTF3 WILD-TYPE" "NTF3 WILD-TYPE" "NTF3 WILD-TYPE" "NTF3 WILD-TYPE" 
    TCGA-US-A77J 
"NTF3 WILD-TYPE" 
    TCGA-F2-6879     TCGA-F2-6880     TCGA-F2-7273     TCGA-F2-7276 
"NTF3 WILD-TYPE" "NTF3 WILD-TYPE" "NTF3 WILD-TYPE" "NTF3 WILD-TYPE" 
    TCGA-F2-A44G     TCGA-F2-A44H     TCGA-FB-A4P5     TCGA-FB-A4P6 
"NTF3 WILD-TYPE"   "NTF3 MUTATED" "NTF3 WILD-TYPE"   "NTF3 MUTATED" 
    TCGA-FB-A545     TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-FB-A7DR 
"NTF3 WILD-TYPE" "NTF3 WILD-TYPE" "NTF3 WILD-TYPE" "NTF3 WILD-TYPE" 
    TCGA-FZ-5920     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-H6-8124 
"NTF3 WILD-TYPE" "NTF3 WILD-TYPE" "NTF3 WILD-TYPE" "NTF3 WILD-TYPE" 
    TCGA-H6-A45N     TCGA-H8-A6C1     TCGA-HZ-7289     TCGA-HZ-7918 
"NTF3 WILD-TYPE" "NTF3 WILD-TYPE" "NTF3 WILD-TYPE" "NTF3 WILD-TYPE" 
    TCGA-HZ-7919     TCGA-HZ-7922     TCGA-HZ-7923     TCGA-HZ-7924 
"NTF3 WILD-TYPE" "NTF3 WILD-TYPE" "NTF3 WILD-TYPE" "NTF3 WILD-TYPE" 
    TCGA-HZ-7925     TCGA-HZ-7926     TCGA-HZ-8001     TCGA-HZ-8002 
"NTF3 WILD-TYPE" "NTF3 WILD-TYPE" "NTF3 WILD-TYPE" "NTF3 WILD-TYPE" 
    TCGA-HZ-8003     TCGA-HZ-8005     TCGA-HZ-8315     TCGA-HZ-8317 
"NTF3 WILD-TYPE" "NTF3 WILD-TYPE" "NTF3 WILD-TYPE" "NTF3 WILD-TYPE" 
    TCGA-HZ-8636     TCGA-HZ-8638     TCGA-HZ-A49G     TCGA-HZ-A49H 
"NTF3 WILD-TYPE" "NTF3 WILD-TYPE" "NTF3 WILD-TYPE"   "NTF3 MUTATED" 
    TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-IB-7644     TCGA-IB-7645 
"NTF3 WILD-TYPE" "NTF3 WILD-TYPE" "NTF3 WILD-TYPE" "NTF3 WILD-TYPE" 
    TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7651 
"NTF3 WILD-TYPE" "NTF3 WILD-TYPE" "NTF3 WILD-TYPE" "NTF3 WILD-TYPE" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887 
  "NTF3 MUTATED" "NTF3 WILD-TYPE" "NTF3 WILD-TYPE" "NTF3 WILD-TYPE" 
    TCGA-IB-7888     TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891 
"NTF3 WILD-TYPE" "NTF3 WILD-TYPE"   "NTF3 MUTATED" "NTF3 WILD-TYPE" 
    TCGA-IB-7893     TCGA-IB-7897     TCGA-IB-8126     TCGA-IB-8127 
"NTF3 WILD-TYPE" "NTF3 WILD-TYPE" "NTF3 WILD-TYPE" "NTF3 WILD-TYPE" 
    TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS 
"NTF3 WILD-TYPE" "NTF3 WILD-TYPE" "NTF3 WILD-TYPE" "NTF3 WILD-TYPE" 
    TCGA-IB-A5ST     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
"NTF3 WILD-TYPE" "NTF3 WILD-TYPE" "NTF3 WILD-TYPE"   "NTF3 MUTATED" 
    TCGA-PZ-A5RE     TCGA-Q3-A5QY     TCGA-US-A779     TCGA-US-A77E 
"NTF3 WILD-TYPE" "NTF3 WILD-TYPE" "NTF3 WILD-TYPE" "NTF3 WILD-TYPE" 
    TCGA-US-A77J 
"NTF3 WILD-TYPE" 
    TCGA-F2-6879     TCGA-F2-6880     TCGA-F2-7273     TCGA-F2-7276 
"NTF3 WILD-TYPE" "NTF3 WILD-TYPE" "NTF3 WILD-TYPE" "NTF3 WILD-TYPE" 
    TCGA-F2-A44G     TCGA-F2-A44H     TCGA-FB-A4P5     TCGA-FB-A4P6 
"NTF3 WILD-TYPE"   "NTF3 MUTATED" "NTF3 WILD-TYPE"   "NTF3 MUTATED" 
    TCGA-FB-A545     TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-FB-A7DR 
"NTF3 WILD-TYPE" "NTF3 WILD-TYPE" "NTF3 WILD-TYPE" "NTF3 WILD-TYPE" 
    TCGA-FZ-5920     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-H6-8124 
"NTF3 WILD-TYPE" "NTF3 WILD-TYPE" "NTF3 WILD-TYPE" "NTF3 WILD-TYPE" 
    TCGA-H6-A45N     TCGA-H8-A6C1     TCGA-HZ-7289     TCGA-HZ-7918 
"NTF3 WILD-TYPE" "NTF3 WILD-TYPE" "NTF3 WILD-TYPE" "NTF3 WILD-TYPE" 
    TCGA-HZ-7919     TCGA-HZ-7922     TCGA-HZ-7923     TCGA-HZ-7924 
"NTF3 WILD-TYPE" "NTF3 WILD-TYPE" "NTF3 WILD-TYPE" "NTF3 WILD-TYPE" 
    TCGA-HZ-7925     TCGA-HZ-7926     TCGA-HZ-8001     TCGA-HZ-8002 
"NTF3 WILD-TYPE" "NTF3 WILD-TYPE" "NTF3 WILD-TYPE" "NTF3 WILD-TYPE" 
    TCGA-HZ-8003     TCGA-HZ-8005     TCGA-HZ-8315     TCGA-HZ-8317 
"NTF3 WILD-TYPE" "NTF3 WILD-TYPE" "NTF3 WILD-TYPE" "NTF3 WILD-TYPE" 
    TCGA-HZ-8636     TCGA-HZ-8638     TCGA-HZ-A49G     TCGA-HZ-A49H 
"NTF3 WILD-TYPE" "NTF3 WILD-TYPE" "NTF3 WILD-TYPE"   "NTF3 MUTATED" 
    TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-IB-7644     TCGA-IB-7645 
"NTF3 WILD-TYPE" "NTF3 WILD-TYPE" "NTF3 WILD-TYPE" "NTF3 WILD-TYPE" 
    TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7651 
"NTF3 WILD-TYPE" "NTF3 WILD-TYPE" "NTF3 WILD-TYPE" "NTF3 WILD-TYPE" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887 
  "NTF3 MUTATED" "NTF3 WILD-TYPE" "NTF3 WILD-TYPE" "NTF3 WILD-TYPE" 
    TCGA-IB-7888     TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891 
"NTF3 WILD-TYPE" "NTF3 WILD-TYPE"   "NTF3 MUTATED" "NTF3 WILD-TYPE" 
    TCGA-IB-7893     TCGA-IB-7897     TCGA-IB-8126     TCGA-IB-8127 
"NTF3 WILD-TYPE" "NTF3 WILD-TYPE" "NTF3 WILD-TYPE" "NTF3 WILD-TYPE" 
    TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS 
"NTF3 WILD-TYPE" "NTF3 WILD-TYPE" "NTF3 WILD-TYPE" "NTF3 WILD-TYPE" 
    TCGA-IB-A5ST     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
"NTF3 WILD-TYPE" "NTF3 WILD-TYPE" "NTF3 WILD-TYPE"   "NTF3 MUTATED" 
    TCGA-PZ-A5RE     TCGA-Q3-A5QY     TCGA-US-A779     TCGA-US-A77E 
"NTF3 WILD-TYPE" "NTF3 WILD-TYPE" "NTF3 WILD-TYPE" "NTF3 WILD-TYPE" 
    TCGA-US-A77J 
"NTF3 WILD-TYPE" 
[1] "hr=" "3.2"
D306V2, continuous
                vv
clus             STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  NTF3 MUTATED          0        1         2         3         0        0
  NTF3 WILD-TYPE        1        3         9        48         2        3
D306V3, multiclass
                vv
clus             T1+T2 T3+T4
  NTF3 MUTATED       1     5
  NTF3 WILD-TYPE     5    61
D306V4, multiclass
       clus
vv      NTF3 MUTATED NTF3 WILD-TYPE
  T1+T2            1              5
  T3+T4            5             61
D306V5, binary
                cls
clus              0  1
  NTF3 MUTATED    3  3
  NTF3 WILD-TYPE 14 51
[1] "tbl2"
                cls
clus             [,1] [,2]
  NTF3 MUTATED      3    3
  NTF3 WILD-TYPE   14   51
   clus
vv  NTF3 MUTATED NTF3 WILD-TYPE
  0            3             14
  1            3             51
                vv
clus             M0 M1 MX
  NTF3 MUTATED    4  0  2
  NTF3 WILD-TYPE 35  3 28
D306V6, multiclass
    clus
vv   NTF3 MUTATED NTF3 WILD-TYPE
  M0            4             35
  M1            0              3
  MX            2             28
D306V7, binary
                cls
clus              0  1
  NTF3 MUTATED    2  4
  NTF3 WILD-TYPE 34 32
[1] "tbl2"
                cls
clus             [,1] [,2]
  NTF3 MUTATED      2    4
  NTF3 WILD-TYPE   34   32
        clus
vv       NTF3 MUTATED NTF3 WILD-TYPE
  FEMALE            2             34
  MALE              4             32
                vv
clus             PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  NTF3 MUTATED                                     6
  NTF3 WILD-TYPE                                  59
                vv
clus             PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  NTF3 MUTATED                                       0
  NTF3 WILD-TYPE                                     4
                vv
clus             PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  NTF3 MUTATED                                                  0
  NTF3 WILD-TYPE                                                2
D306V8, multiclass
                                                  clus
vv                                                 NTF3 MUTATED NTF3 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                         6             59
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                       0              4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA            0              2
D306V9, continuous
[1] "Remove cluster labels:" "NTF3 MUTATED"          
clus
  NTF3 MUTATED NTF3 WILD-TYPE 
             2             20 
    TCGA-F2-6880     TCGA-FB-A4P5     TCGA-FB-A5VM     TCGA-FB-A78T 
"NTF3 WILD-TYPE" "NTF3 WILD-TYPE" "NTF3 WILD-TYPE" "NTF3 WILD-TYPE" 
    TCGA-FB-A7DR     TCGA-H6-8124     TCGA-H6-A45N     TCGA-H8-A6C1 
"NTF3 WILD-TYPE" "NTF3 WILD-TYPE" "NTF3 WILD-TYPE" "NTF3 WILD-TYPE" 
    TCGA-IB-7644     TCGA-IB-7649     TCGA-IB-7651     TCGA-IB-7885 
"NTF3 WILD-TYPE" "NTF3 WILD-TYPE" "NTF3 WILD-TYPE" "NTF3 WILD-TYPE" 
    TCGA-IB-7886     TCGA-IB-7887     TCGA-IB-7891     TCGA-IB-8126 
"NTF3 WILD-TYPE" "NTF3 WILD-TYPE" "NTF3 WILD-TYPE" "NTF3 WILD-TYPE" 
    TCGA-IB-8127     TCGA-IB-A5SS     TCGA-IB-A6UG     TCGA-LB-A7SX 
"NTF3 WILD-TYPE" "NTF3 WILD-TYPE" "NTF3 WILD-TYPE" "NTF3 WILD-TYPE" 
D306V10, continuous
[1] "Remove cluster labels:" "NTF3 MUTATED"          
clus
  NTF3 MUTATED NTF3 WILD-TYPE 
             2             17 
    TCGA-FB-A4P5     TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-FB-A7DR 
"NTF3 WILD-TYPE" "NTF3 WILD-TYPE" "NTF3 WILD-TYPE" "NTF3 WILD-TYPE" 
    TCGA-H6-8124     TCGA-H8-A6C1     TCGA-IB-7644     TCGA-IB-7649 
"NTF3 WILD-TYPE" "NTF3 WILD-TYPE" "NTF3 WILD-TYPE" "NTF3 WILD-TYPE" 
    TCGA-IB-7651     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7891 
"NTF3 WILD-TYPE" "NTF3 WILD-TYPE" "NTF3 WILD-TYPE" "NTF3 WILD-TYPE" 
    TCGA-IB-8126     TCGA-IB-8127     TCGA-IB-A5SS     TCGA-IB-A6UG 
"NTF3 WILD-TYPE" "NTF3 WILD-TYPE" "NTF3 WILD-TYPE" "NTF3 WILD-TYPE" 
    TCGA-LB-A7SX 
"NTF3 WILD-TYPE" 
                vv
clus             R0 R1 RX
  NTF3 MUTATED    4  1  0
  NTF3 WILD-TYPE 38 23  2
D306V11, multiclass
    clus
vv   NTF3 MUTATED NTF3 WILD-TYPE
  R0            4             38
  R1            1             23
  RX            0              2
D306V12, continuous

Clustering(307) Variable = C9ORF69 MUTATION ANALYSIS
D307V1, survival
                   sevent
clus2                0  1
  C9ORF69 MUTATED    2  2
  C9ORF69 WILD-TYPE 38 27
  C9ORF69 MUTATED C9ORF69 WILD-TYPE 
                4                65 
  C9ORF69 MUTATED C9ORF69 WILD-TYPE 
                2                27 
$`C9ORF69 MUTATED`
TCGA-HZ-8003 TCGA-HZ-8636 TCGA-IB-7651 TCGA-IB-7890 
        0.69         0.16        19.82        19.66 

$`C9ORF69 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P5 TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR 
        0.13        11.93        12.66         2.47         0.03         5.46 
TCGA-FZ-5920 TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 
        2.01        36.20        20.81        12.89         7.66        13.02 
TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 
        7.89         0.92         0.66         0.13         0.26        12.13 
TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8005 TCGA-HZ-8315 
       11.87         0.26         0.62         0.79         3.95         0.92 
TCGA-HZ-8317 TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK 
        0.53         2.99         0.76         0.95         6.38         1.51 
TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7652 
       11.41        49.38         4.77        21.90        15.35        15.65 
TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7891 
       27.98         4.04         3.62        43.79        15.81        16.04 
TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP 
        3.85        15.98         0.56        17.16        10.82         9.86 
TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W 
        7.20        15.12         0.26         1.35         4.18         3.62 
TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
        8.12        13.68        16.80        14.14        18.67 

  C9ORF69 MUTATED C9ORF69 WILD-TYPE 
             0.16              0.03 
  C9ORF69 MUTATED C9ORF69 WILD-TYPE 
            19.82             49.38 
  C9ORF69 MUTATED C9ORF69 WILD-TYPE 
           10.175             7.660 
[1] "0.2 - 19.8 (10.2)" "0.0 - 49.4 (7.7)" 
       TCGA-F2-6879        TCGA-F2-6880        TCGA-F2-7273        TCGA-F2-7276 
"C9ORF69 WILD-TYPE" "C9ORF69 WILD-TYPE" "C9ORF69 WILD-TYPE" "C9ORF69 WILD-TYPE" 
       TCGA-F2-A44G        TCGA-F2-A44H        TCGA-FB-A4P5        TCGA-FB-A4P6 
"C9ORF69 WILD-TYPE" "C9ORF69 WILD-TYPE" "C9ORF69 WILD-TYPE" "C9ORF69 WILD-TYPE" 
       TCGA-FB-A545        TCGA-FB-A5VM        TCGA-FB-A78T        TCGA-FB-A7DR 
"C9ORF69 WILD-TYPE" "C9ORF69 WILD-TYPE" "C9ORF69 WILD-TYPE" "C9ORF69 WILD-TYPE" 
       TCGA-FZ-5920        TCGA-FZ-5922        TCGA-FZ-5923        TCGA-H6-8124 
"C9ORF69 WILD-TYPE" "C9ORF69 WILD-TYPE" "C9ORF69 WILD-TYPE" "C9ORF69 WILD-TYPE" 
       TCGA-H6-A45N        TCGA-H8-A6C1        TCGA-HZ-7289        TCGA-HZ-7918 
"C9ORF69 WILD-TYPE" "C9ORF69 WILD-TYPE" "C9ORF69 WILD-TYPE" "C9ORF69 WILD-TYPE" 
       TCGA-HZ-7919        TCGA-HZ-7922        TCGA-HZ-7923        TCGA-HZ-7924 
"C9ORF69 WILD-TYPE" "C9ORF69 WILD-TYPE" "C9ORF69 WILD-TYPE" "C9ORF69 WILD-TYPE" 
       TCGA-HZ-7925        TCGA-HZ-7926        TCGA-HZ-8001        TCGA-HZ-8002 
"C9ORF69 WILD-TYPE" "C9ORF69 WILD-TYPE" "C9ORF69 WILD-TYPE" "C9ORF69 WILD-TYPE" 
       TCGA-HZ-8003        TCGA-HZ-8005        TCGA-HZ-8315        TCGA-HZ-8317 
  "C9ORF69 MUTATED" "C9ORF69 WILD-TYPE" "C9ORF69 WILD-TYPE" "C9ORF69 WILD-TYPE" 
       TCGA-HZ-8636        TCGA-HZ-8638        TCGA-HZ-A49G        TCGA-HZ-A49H 
  "C9ORF69 MUTATED" "C9ORF69 WILD-TYPE" "C9ORF69 WILD-TYPE" "C9ORF69 WILD-TYPE" 
       TCGA-HZ-A4BH        TCGA-HZ-A4BK        TCGA-IB-7644        TCGA-IB-7645 
"C9ORF69 WILD-TYPE" "C9ORF69 WILD-TYPE" "C9ORF69 WILD-TYPE" "C9ORF69 WILD-TYPE" 
       TCGA-IB-7646        TCGA-IB-7647        TCGA-IB-7649        TCGA-IB-7651 
"C9ORF69 WILD-TYPE" "C9ORF69 WILD-TYPE" "C9ORF69 WILD-TYPE"   "C9ORF69 MUTATED" 
       TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-7886        TCGA-IB-7887 
"C9ORF69 WILD-TYPE" "C9ORF69 WILD-TYPE" "C9ORF69 WILD-TYPE" "C9ORF69 WILD-TYPE" 
       TCGA-IB-7888        TCGA-IB-7889        TCGA-IB-7890        TCGA-IB-7891 
"C9ORF69 WILD-TYPE" "C9ORF69 WILD-TYPE"   "C9ORF69 MUTATED" "C9ORF69 WILD-TYPE" 
       TCGA-IB-7893        TCGA-IB-7897        TCGA-IB-8126        TCGA-IB-8127 
"C9ORF69 WILD-TYPE" "C9ORF69 WILD-TYPE" "C9ORF69 WILD-TYPE" "C9ORF69 WILD-TYPE" 
       TCGA-IB-A5SO        TCGA-IB-A5SP        TCGA-IB-A5SQ        TCGA-IB-A5SS 
"C9ORF69 WILD-TYPE" "C9ORF69 WILD-TYPE" "C9ORF69 WILD-TYPE" "C9ORF69 WILD-TYPE" 
       TCGA-IB-A5ST        TCGA-IB-A6UG        TCGA-LB-A7SX        TCGA-OE-A75W 
"C9ORF69 WILD-TYPE" "C9ORF69 WILD-TYPE" "C9ORF69 WILD-TYPE" "C9ORF69 WILD-TYPE" 
       TCGA-PZ-A5RE        TCGA-Q3-A5QY        TCGA-US-A779        TCGA-US-A77E 
"C9ORF69 WILD-TYPE" "C9ORF69 WILD-TYPE" "C9ORF69 WILD-TYPE" "C9ORF69 WILD-TYPE" 
       TCGA-US-A77J 
"C9ORF69 WILD-TYPE" 
       TCGA-F2-6879        TCGA-F2-6880        TCGA-F2-7273        TCGA-F2-7276 
"C9ORF69 WILD-TYPE" "C9ORF69 WILD-TYPE" "C9ORF69 WILD-TYPE" "C9ORF69 WILD-TYPE" 
       TCGA-F2-A44G        TCGA-F2-A44H        TCGA-FB-A4P5        TCGA-FB-A4P6 
"C9ORF69 WILD-TYPE" "C9ORF69 WILD-TYPE" "C9ORF69 WILD-TYPE" "C9ORF69 WILD-TYPE" 
       TCGA-FB-A545        TCGA-FB-A5VM        TCGA-FB-A78T        TCGA-FB-A7DR 
"C9ORF69 WILD-TYPE" "C9ORF69 WILD-TYPE" "C9ORF69 WILD-TYPE" "C9ORF69 WILD-TYPE" 
       TCGA-FZ-5920        TCGA-FZ-5922        TCGA-FZ-5923        TCGA-H6-8124 
"C9ORF69 WILD-TYPE" "C9ORF69 WILD-TYPE" "C9ORF69 WILD-TYPE" "C9ORF69 WILD-TYPE" 
       TCGA-H6-A45N        TCGA-H8-A6C1        TCGA-HZ-7289        TCGA-HZ-7918 
"C9ORF69 WILD-TYPE" "C9ORF69 WILD-TYPE" "C9ORF69 WILD-TYPE" "C9ORF69 WILD-TYPE" 
       TCGA-HZ-7919        TCGA-HZ-7922        TCGA-HZ-7923        TCGA-HZ-7924 
"C9ORF69 WILD-TYPE" "C9ORF69 WILD-TYPE" "C9ORF69 WILD-TYPE" "C9ORF69 WILD-TYPE" 
       TCGA-HZ-7925        TCGA-HZ-7926        TCGA-HZ-8001        TCGA-HZ-8002 
"C9ORF69 WILD-TYPE" "C9ORF69 WILD-TYPE" "C9ORF69 WILD-TYPE" "C9ORF69 WILD-TYPE" 
       TCGA-HZ-8003        TCGA-HZ-8005        TCGA-HZ-8315        TCGA-HZ-8317 
  "C9ORF69 MUTATED" "C9ORF69 WILD-TYPE" "C9ORF69 WILD-TYPE" "C9ORF69 WILD-TYPE" 
       TCGA-HZ-8636        TCGA-HZ-8638        TCGA-HZ-A49G        TCGA-HZ-A49H 
  "C9ORF69 MUTATED" "C9ORF69 WILD-TYPE" "C9ORF69 WILD-TYPE" "C9ORF69 WILD-TYPE" 
       TCGA-HZ-A4BH        TCGA-HZ-A4BK        TCGA-IB-7644        TCGA-IB-7645 
"C9ORF69 WILD-TYPE" "C9ORF69 WILD-TYPE" "C9ORF69 WILD-TYPE" "C9ORF69 WILD-TYPE" 
       TCGA-IB-7646        TCGA-IB-7647        TCGA-IB-7649        TCGA-IB-7651 
"C9ORF69 WILD-TYPE" "C9ORF69 WILD-TYPE" "C9ORF69 WILD-TYPE"   "C9ORF69 MUTATED" 
       TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-7886        TCGA-IB-7887 
"C9ORF69 WILD-TYPE" "C9ORF69 WILD-TYPE" "C9ORF69 WILD-TYPE" "C9ORF69 WILD-TYPE" 
       TCGA-IB-7888        TCGA-IB-7889        TCGA-IB-7890        TCGA-IB-7891 
"C9ORF69 WILD-TYPE" "C9ORF69 WILD-TYPE"   "C9ORF69 MUTATED" "C9ORF69 WILD-TYPE" 
       TCGA-IB-7893        TCGA-IB-7897        TCGA-IB-8126        TCGA-IB-8127 
"C9ORF69 WILD-TYPE" "C9ORF69 WILD-TYPE" "C9ORF69 WILD-TYPE" "C9ORF69 WILD-TYPE" 
       TCGA-IB-A5SO        TCGA-IB-A5SP        TCGA-IB-A5SQ        TCGA-IB-A5SS 
"C9ORF69 WILD-TYPE" "C9ORF69 WILD-TYPE" "C9ORF69 WILD-TYPE" "C9ORF69 WILD-TYPE" 
       TCGA-IB-A5ST        TCGA-IB-A6UG        TCGA-LB-A7SX        TCGA-OE-A75W 
"C9ORF69 WILD-TYPE" "C9ORF69 WILD-TYPE" "C9ORF69 WILD-TYPE" "C9ORF69 WILD-TYPE" 
       TCGA-PZ-A5RE        TCGA-Q3-A5QY        TCGA-US-A779        TCGA-US-A77E 
"C9ORF69 WILD-TYPE" "C9ORF69 WILD-TYPE" "C9ORF69 WILD-TYPE" "C9ORF69 WILD-TYPE" 
       TCGA-US-A77J 
"C9ORF69 WILD-TYPE" 
       TCGA-F2-6879        TCGA-F2-6880        TCGA-F2-7273        TCGA-F2-7276 
"C9ORF69 WILD-TYPE" "C9ORF69 WILD-TYPE" "C9ORF69 WILD-TYPE" "C9ORF69 WILD-TYPE" 
       TCGA-F2-A44G        TCGA-F2-A44H        TCGA-FB-A4P5        TCGA-FB-A4P6 
"C9ORF69 WILD-TYPE" "C9ORF69 WILD-TYPE" "C9ORF69 WILD-TYPE" "C9ORF69 WILD-TYPE" 
       TCGA-FB-A545        TCGA-FB-A5VM        TCGA-FB-A78T        TCGA-FB-A7DR 
"C9ORF69 WILD-TYPE" "C9ORF69 WILD-TYPE" "C9ORF69 WILD-TYPE" "C9ORF69 WILD-TYPE" 
       TCGA-FZ-5920        TCGA-FZ-5922        TCGA-FZ-5923        TCGA-H6-8124 
"C9ORF69 WILD-TYPE" "C9ORF69 WILD-TYPE" "C9ORF69 WILD-TYPE" "C9ORF69 WILD-TYPE" 
       TCGA-H6-A45N        TCGA-H8-A6C1        TCGA-HZ-7289        TCGA-HZ-7918 
"C9ORF69 WILD-TYPE" "C9ORF69 WILD-TYPE" "C9ORF69 WILD-TYPE" "C9ORF69 WILD-TYPE" 
       TCGA-HZ-7919        TCGA-HZ-7922        TCGA-HZ-7923        TCGA-HZ-7924 
"C9ORF69 WILD-TYPE" "C9ORF69 WILD-TYPE" "C9ORF69 WILD-TYPE" "C9ORF69 WILD-TYPE" 
       TCGA-HZ-7925        TCGA-HZ-7926        TCGA-HZ-8001        TCGA-HZ-8002 
"C9ORF69 WILD-TYPE" "C9ORF69 WILD-TYPE" "C9ORF69 WILD-TYPE" "C9ORF69 WILD-TYPE" 
       TCGA-HZ-8003        TCGA-HZ-8005        TCGA-HZ-8315        TCGA-HZ-8317 
  "C9ORF69 MUTATED" "C9ORF69 WILD-TYPE" "C9ORF69 WILD-TYPE" "C9ORF69 WILD-TYPE" 
       TCGA-HZ-8636        TCGA-HZ-8638        TCGA-HZ-A49G        TCGA-HZ-A49H 
  "C9ORF69 MUTATED" "C9ORF69 WILD-TYPE" "C9ORF69 WILD-TYPE" "C9ORF69 WILD-TYPE" 
       TCGA-HZ-A4BH        TCGA-HZ-A4BK        TCGA-IB-7644        TCGA-IB-7645 
"C9ORF69 WILD-TYPE" "C9ORF69 WILD-TYPE" "C9ORF69 WILD-TYPE" "C9ORF69 WILD-TYPE" 
       TCGA-IB-7646        TCGA-IB-7647        TCGA-IB-7649        TCGA-IB-7651 
"C9ORF69 WILD-TYPE" "C9ORF69 WILD-TYPE" "C9ORF69 WILD-TYPE"   "C9ORF69 MUTATED" 
       TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-7886        TCGA-IB-7887 
"C9ORF69 WILD-TYPE" "C9ORF69 WILD-TYPE" "C9ORF69 WILD-TYPE" "C9ORF69 WILD-TYPE" 
       TCGA-IB-7888        TCGA-IB-7889        TCGA-IB-7890        TCGA-IB-7891 
"C9ORF69 WILD-TYPE" "C9ORF69 WILD-TYPE"   "C9ORF69 MUTATED" "C9ORF69 WILD-TYPE" 
       TCGA-IB-7893        TCGA-IB-7897        TCGA-IB-8126        TCGA-IB-8127 
"C9ORF69 WILD-TYPE" "C9ORF69 WILD-TYPE" "C9ORF69 WILD-TYPE" "C9ORF69 WILD-TYPE" 
       TCGA-IB-A5SO        TCGA-IB-A5SP        TCGA-IB-A5SQ        TCGA-IB-A5SS 
"C9ORF69 WILD-TYPE" "C9ORF69 WILD-TYPE" "C9ORF69 WILD-TYPE" "C9ORF69 WILD-TYPE" 
       TCGA-IB-A5ST        TCGA-IB-A6UG        TCGA-LB-A7SX        TCGA-OE-A75W 
"C9ORF69 WILD-TYPE" "C9ORF69 WILD-TYPE" "C9ORF69 WILD-TYPE" "C9ORF69 WILD-TYPE" 
       TCGA-PZ-A5RE        TCGA-Q3-A5QY        TCGA-US-A779        TCGA-US-A77E 
"C9ORF69 WILD-TYPE" "C9ORF69 WILD-TYPE" "C9ORF69 WILD-TYPE" "C9ORF69 WILD-TYPE" 
       TCGA-US-A77J 
"C9ORF69 WILD-TYPE" 
[1] "hr=" "1.1"
D307V2, continuous
                   vv
clus                STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  C9ORF69 MUTATED          0        1         0         2         0        1
  C9ORF69 WILD-TYPE        1        3        11        49         2        2
D307V3, multiclass
                   vv
clus                T1+T2 T3+T4
  C9ORF69 MUTATED       1     3
  C9ORF69 WILD-TYPE     5    63
D307V4, multiclass
       clus
vv      C9ORF69 MUTATED C9ORF69 WILD-TYPE
  T1+T2               1                 5
  T3+T4               3                63
D307V5, binary
                   cls
clus                 0  1
  C9ORF69 MUTATED    2  2
  C9ORF69 WILD-TYPE 15 52
[1] "tbl2"
                   cls
clus                [,1] [,2]
  C9ORF69 MUTATED      2    2
  C9ORF69 WILD-TYPE   15   52
   clus
vv  C9ORF69 MUTATED C9ORF69 WILD-TYPE
  0               2                15
  1               2                52
                   vv
clus                M0 M1 MX
  C9ORF69 MUTATED    2  1  1
  C9ORF69 WILD-TYPE 37  2 29
D307V6, multiclass
    clus
vv   C9ORF69 MUTATED C9ORF69 WILD-TYPE
  M0               2                37
  M1               1                 2
  MX               1                29
D307V7, binary
                   cls
clus                 0  1
  C9ORF69 MUTATED    3  1
  C9ORF69 WILD-TYPE 33 35
[1] "tbl2"
                   cls
clus                [,1] [,2]
  C9ORF69 MUTATED      3    1
  C9ORF69 WILD-TYPE   33   35
        clus
vv       C9ORF69 MUTATED C9ORF69 WILD-TYPE
  FEMALE               3                33
  MALE                 1                35
                   vv
clus                PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  C9ORF69 MUTATED                                     4
  C9ORF69 WILD-TYPE                                  61
                   vv
clus                PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  C9ORF69 MUTATED                                       0
  C9ORF69 WILD-TYPE                                     4
                   vv
clus                PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  C9ORF69 MUTATED                                                  0
  C9ORF69 WILD-TYPE                                                2
D307V8, multiclass
                                                  clus
vv                                                 C9ORF69 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                            4
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                          0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA               0
                                                  clus
vv                                                 C9ORF69 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                             61
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                            4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                 2
D307V9, continuous
[1] "Remove cluster labels:" "C9ORF69 MUTATED"       
clus
  C9ORF69 MUTATED C9ORF69 WILD-TYPE 
                1                21 
       TCGA-F2-6880        TCGA-FB-A4P5        TCGA-FB-A4P6        TCGA-FB-A5VM 
"C9ORF69 WILD-TYPE" "C9ORF69 WILD-TYPE" "C9ORF69 WILD-TYPE" "C9ORF69 WILD-TYPE" 
       TCGA-FB-A78T        TCGA-FB-A7DR        TCGA-H6-8124        TCGA-H6-A45N 
"C9ORF69 WILD-TYPE" "C9ORF69 WILD-TYPE" "C9ORF69 WILD-TYPE" "C9ORF69 WILD-TYPE" 
       TCGA-H8-A6C1        TCGA-IB-7644        TCGA-IB-7649        TCGA-IB-7885 
"C9ORF69 WILD-TYPE" "C9ORF69 WILD-TYPE" "C9ORF69 WILD-TYPE" "C9ORF69 WILD-TYPE" 
       TCGA-IB-7886        TCGA-IB-7887        TCGA-IB-7891        TCGA-IB-8126 
"C9ORF69 WILD-TYPE" "C9ORF69 WILD-TYPE" "C9ORF69 WILD-TYPE" "C9ORF69 WILD-TYPE" 
       TCGA-IB-8127        TCGA-IB-A5SS        TCGA-IB-A6UG        TCGA-LB-A7SX 
"C9ORF69 WILD-TYPE" "C9ORF69 WILD-TYPE" "C9ORF69 WILD-TYPE" "C9ORF69 WILD-TYPE" 
       TCGA-OE-A75W 
"C9ORF69 WILD-TYPE" 
D307V10, continuous
[1] "Remove cluster labels:" "C9ORF69 MUTATED"       
clus
  C9ORF69 MUTATED C9ORF69 WILD-TYPE 
                1                18 
       TCGA-FB-A4P5        TCGA-FB-A4P6        TCGA-FB-A5VM        TCGA-FB-A78T 
"C9ORF69 WILD-TYPE" "C9ORF69 WILD-TYPE" "C9ORF69 WILD-TYPE" "C9ORF69 WILD-TYPE" 
       TCGA-FB-A7DR        TCGA-H6-8124        TCGA-H8-A6C1        TCGA-IB-7644 
"C9ORF69 WILD-TYPE" "C9ORF69 WILD-TYPE" "C9ORF69 WILD-TYPE" "C9ORF69 WILD-TYPE" 
       TCGA-IB-7649        TCGA-IB-7885        TCGA-IB-7886        TCGA-IB-7891 
"C9ORF69 WILD-TYPE" "C9ORF69 WILD-TYPE" "C9ORF69 WILD-TYPE" "C9ORF69 WILD-TYPE" 
       TCGA-IB-8126        TCGA-IB-8127        TCGA-IB-A5SS        TCGA-IB-A6UG 
"C9ORF69 WILD-TYPE" "C9ORF69 WILD-TYPE" "C9ORF69 WILD-TYPE" "C9ORF69 WILD-TYPE" 
       TCGA-LB-A7SX        TCGA-OE-A75W 
"C9ORF69 WILD-TYPE" "C9ORF69 WILD-TYPE" 
                   vv
clus                R0 R1 RX
  C9ORF69 MUTATED    3  1  0
  C9ORF69 WILD-TYPE 39 23  2
D307V11, multiclass
    clus
vv   C9ORF69 MUTATED C9ORF69 WILD-TYPE
  R0               3                39
  R1               1                23
  RX               0                 2
D307V12, continuous

Clustering(308) Variable = KIAA0430 MUTATION ANALYSIS
D308V1, survival
                    sevent
clus2                 0  1
  KIAA0430 MUTATED    3  5
  KIAA0430 WILD-TYPE 37 24
  KIAA0430 MUTATED KIAA0430 WILD-TYPE 
                 8                 61 
  KIAA0430 MUTATED KIAA0430 WILD-TYPE 
                 5                 24 
$`KIAA0430 MUTATED`
TCGA-H6-8124 TCGA-H6-A45N TCGA-HZ-8005 TCGA-IB-7651 TCGA-IB-7887 TCGA-IB-7888 
       12.89         7.66         3.95        19.82         3.62        43.79 
TCGA-IB-8127 TCGA-IB-A5SP 
       17.16         9.86 

$`KIAA0430 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P5 TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR 
        0.13        11.93        12.66         2.47         0.03         5.46 
TCGA-FZ-5920 TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H8-A6C1 TCGA-HZ-7289 TCGA-HZ-7918 
        2.01        36.20        20.81        13.02         7.89         0.92 
TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 
        0.66         0.13         0.26        12.13        11.87         0.26 
TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8636 
        0.62         0.79         0.69         0.92         0.53         0.16 
TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 
        2.99         0.76         0.95         6.38         1.51        11.41 
TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7652 TCGA-IB-7885 
       49.38         4.77        21.90        15.35        15.65        27.98 
TCGA-IB-7886 TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-7897 
        4.04        15.81        19.66        16.04         3.85        15.98 
TCGA-IB-8126 TCGA-IB-A5SO TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG 
        0.56        10.82         7.20        15.12         0.26         1.35 
TCGA-LB-A7SX TCGA-OE-A75W TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E 
        4.18         3.62         8.12        13.68        16.80        14.14 
TCGA-US-A77J 
       18.67 

  KIAA0430 MUTATED KIAA0430 WILD-TYPE 
              3.62               0.03 
  KIAA0430 MUTATED KIAA0430 WILD-TYPE 
             43.79              49.38 
  KIAA0430 MUTATED KIAA0430 WILD-TYPE 
            11.375              7.100 
[1] "3.6 - 43.8 (11.4)" "0.0 - 49.4 (7.1)" 
        TCGA-F2-6879         TCGA-F2-6880         TCGA-F2-7273 
"KIAA0430 WILD-TYPE" "KIAA0430 WILD-TYPE" "KIAA0430 WILD-TYPE" 
        TCGA-F2-7276         TCGA-F2-A44G         TCGA-F2-A44H 
"KIAA0430 WILD-TYPE" "KIAA0430 WILD-TYPE" "KIAA0430 WILD-TYPE" 
        TCGA-FB-A4P5         TCGA-FB-A4P6         TCGA-FB-A545 
"KIAA0430 WILD-TYPE" "KIAA0430 WILD-TYPE" "KIAA0430 WILD-TYPE" 
        TCGA-FB-A5VM         TCGA-FB-A78T         TCGA-FB-A7DR 
"KIAA0430 WILD-TYPE" "KIAA0430 WILD-TYPE" "KIAA0430 WILD-TYPE" 
        TCGA-FZ-5920         TCGA-FZ-5922         TCGA-FZ-5923 
"KIAA0430 WILD-TYPE" "KIAA0430 WILD-TYPE" "KIAA0430 WILD-TYPE" 
        TCGA-H6-8124         TCGA-H6-A45N         TCGA-H8-A6C1 
  "KIAA0430 MUTATED"   "KIAA0430 MUTATED" "KIAA0430 WILD-TYPE" 
        TCGA-HZ-7289         TCGA-HZ-7918         TCGA-HZ-7919 
"KIAA0430 WILD-TYPE" "KIAA0430 WILD-TYPE" "KIAA0430 WILD-TYPE" 
        TCGA-HZ-7922         TCGA-HZ-7923         TCGA-HZ-7924 
"KIAA0430 WILD-TYPE" "KIAA0430 WILD-TYPE" "KIAA0430 WILD-TYPE" 
        TCGA-HZ-7925         TCGA-HZ-7926         TCGA-HZ-8001 
"KIAA0430 WILD-TYPE" "KIAA0430 WILD-TYPE" "KIAA0430 WILD-TYPE" 
        TCGA-HZ-8002         TCGA-HZ-8003         TCGA-HZ-8005 
"KIAA0430 WILD-TYPE" "KIAA0430 WILD-TYPE"   "KIAA0430 MUTATED" 
        TCGA-HZ-8315         TCGA-HZ-8317         TCGA-HZ-8636 
"KIAA0430 WILD-TYPE" "KIAA0430 WILD-TYPE" "KIAA0430 WILD-TYPE" 
        TCGA-HZ-8638         TCGA-HZ-A49G         TCGA-HZ-A49H 
"KIAA0430 WILD-TYPE" "KIAA0430 WILD-TYPE" "KIAA0430 WILD-TYPE" 
        TCGA-HZ-A4BH         TCGA-HZ-A4BK         TCGA-IB-7644 
"KIAA0430 WILD-TYPE" "KIAA0430 WILD-TYPE" "KIAA0430 WILD-TYPE" 
        TCGA-IB-7645         TCGA-IB-7646         TCGA-IB-7647 
"KIAA0430 WILD-TYPE" "KIAA0430 WILD-TYPE" "KIAA0430 WILD-TYPE" 
        TCGA-IB-7649         TCGA-IB-7651         TCGA-IB-7652 
"KIAA0430 WILD-TYPE"   "KIAA0430 MUTATED" "KIAA0430 WILD-TYPE" 
        TCGA-IB-7885         TCGA-IB-7886         TCGA-IB-7887 
"KIAA0430 WILD-TYPE" "KIAA0430 WILD-TYPE"   "KIAA0430 MUTATED" 
        TCGA-IB-7888         TCGA-IB-7889         TCGA-IB-7890 
  "KIAA0430 MUTATED" "KIAA0430 WILD-TYPE" "KIAA0430 WILD-TYPE" 
        TCGA-IB-7891         TCGA-IB-7893         TCGA-IB-7897 
"KIAA0430 WILD-TYPE" "KIAA0430 WILD-TYPE" "KIAA0430 WILD-TYPE" 
        TCGA-IB-8126         TCGA-IB-8127         TCGA-IB-A5SO 
"KIAA0430 WILD-TYPE"   "KIAA0430 MUTATED" "KIAA0430 WILD-TYPE" 
        TCGA-IB-A5SP         TCGA-IB-A5SQ         TCGA-IB-A5SS 
  "KIAA0430 MUTATED" "KIAA0430 WILD-TYPE" "KIAA0430 WILD-TYPE" 
        TCGA-IB-A5ST         TCGA-IB-A6UG         TCGA-LB-A7SX 
"KIAA0430 WILD-TYPE" "KIAA0430 WILD-TYPE" "KIAA0430 WILD-TYPE" 
        TCGA-OE-A75W         TCGA-PZ-A5RE         TCGA-Q3-A5QY 
"KIAA0430 WILD-TYPE" "KIAA0430 WILD-TYPE" "KIAA0430 WILD-TYPE" 
        TCGA-US-A779         TCGA-US-A77E         TCGA-US-A77J 
"KIAA0430 WILD-TYPE" "KIAA0430 WILD-TYPE" "KIAA0430 WILD-TYPE" 
        TCGA-F2-6879         TCGA-F2-6880         TCGA-F2-7273 
"KIAA0430 WILD-TYPE" "KIAA0430 WILD-TYPE" "KIAA0430 WILD-TYPE" 
        TCGA-F2-7276         TCGA-F2-A44G         TCGA-F2-A44H 
"KIAA0430 WILD-TYPE" "KIAA0430 WILD-TYPE" "KIAA0430 WILD-TYPE" 
        TCGA-FB-A4P5         TCGA-FB-A4P6         TCGA-FB-A545 
"KIAA0430 WILD-TYPE" "KIAA0430 WILD-TYPE" "KIAA0430 WILD-TYPE" 
        TCGA-FB-A5VM         TCGA-FB-A78T         TCGA-FB-A7DR 
"KIAA0430 WILD-TYPE" "KIAA0430 WILD-TYPE" "KIAA0430 WILD-TYPE" 
        TCGA-FZ-5920         TCGA-FZ-5922         TCGA-FZ-5923 
"KIAA0430 WILD-TYPE" "KIAA0430 WILD-TYPE" "KIAA0430 WILD-TYPE" 
        TCGA-H6-8124         TCGA-H6-A45N         TCGA-H8-A6C1 
  "KIAA0430 MUTATED"   "KIAA0430 MUTATED" "KIAA0430 WILD-TYPE" 
        TCGA-HZ-7289         TCGA-HZ-7918         TCGA-HZ-7919 
"KIAA0430 WILD-TYPE" "KIAA0430 WILD-TYPE" "KIAA0430 WILD-TYPE" 
        TCGA-HZ-7922         TCGA-HZ-7923         TCGA-HZ-7924 
"KIAA0430 WILD-TYPE" "KIAA0430 WILD-TYPE" "KIAA0430 WILD-TYPE" 
        TCGA-HZ-7925         TCGA-HZ-7926         TCGA-HZ-8001 
"KIAA0430 WILD-TYPE" "KIAA0430 WILD-TYPE" "KIAA0430 WILD-TYPE" 
        TCGA-HZ-8002         TCGA-HZ-8003         TCGA-HZ-8005 
"KIAA0430 WILD-TYPE" "KIAA0430 WILD-TYPE"   "KIAA0430 MUTATED" 
        TCGA-HZ-8315         TCGA-HZ-8317         TCGA-HZ-8636 
"KIAA0430 WILD-TYPE" "KIAA0430 WILD-TYPE" "KIAA0430 WILD-TYPE" 
        TCGA-HZ-8638         TCGA-HZ-A49G         TCGA-HZ-A49H 
"KIAA0430 WILD-TYPE" "KIAA0430 WILD-TYPE" "KIAA0430 WILD-TYPE" 
        TCGA-HZ-A4BH         TCGA-HZ-A4BK         TCGA-IB-7644 
"KIAA0430 WILD-TYPE" "KIAA0430 WILD-TYPE" "KIAA0430 WILD-TYPE" 
        TCGA-IB-7645         TCGA-IB-7646         TCGA-IB-7647 
"KIAA0430 WILD-TYPE" "KIAA0430 WILD-TYPE" "KIAA0430 WILD-TYPE" 
        TCGA-IB-7649         TCGA-IB-7651         TCGA-IB-7652 
"KIAA0430 WILD-TYPE"   "KIAA0430 MUTATED" "KIAA0430 WILD-TYPE" 
        TCGA-IB-7885         TCGA-IB-7886         TCGA-IB-7887 
"KIAA0430 WILD-TYPE" "KIAA0430 WILD-TYPE"   "KIAA0430 MUTATED" 
        TCGA-IB-7888         TCGA-IB-7889         TCGA-IB-7890 
  "KIAA0430 MUTATED" "KIAA0430 WILD-TYPE" "KIAA0430 WILD-TYPE" 
        TCGA-IB-7891         TCGA-IB-7893         TCGA-IB-7897 
"KIAA0430 WILD-TYPE" "KIAA0430 WILD-TYPE" "KIAA0430 WILD-TYPE" 
        TCGA-IB-8126         TCGA-IB-8127         TCGA-IB-A5SO 
"KIAA0430 WILD-TYPE"   "KIAA0430 MUTATED" "KIAA0430 WILD-TYPE" 
        TCGA-IB-A5SP         TCGA-IB-A5SQ         TCGA-IB-A5SS 
  "KIAA0430 MUTATED" "KIAA0430 WILD-TYPE" "KIAA0430 WILD-TYPE" 
        TCGA-IB-A5ST         TCGA-IB-A6UG         TCGA-LB-A7SX 
"KIAA0430 WILD-TYPE" "KIAA0430 WILD-TYPE" "KIAA0430 WILD-TYPE" 
        TCGA-OE-A75W         TCGA-PZ-A5RE         TCGA-Q3-A5QY 
"KIAA0430 WILD-TYPE" "KIAA0430 WILD-TYPE" "KIAA0430 WILD-TYPE" 
        TCGA-US-A779         TCGA-US-A77E         TCGA-US-A77J 
"KIAA0430 WILD-TYPE" "KIAA0430 WILD-TYPE" "KIAA0430 WILD-TYPE" 
        TCGA-F2-6879         TCGA-F2-6880         TCGA-F2-7273 
"KIAA0430 WILD-TYPE" "KIAA0430 WILD-TYPE" "KIAA0430 WILD-TYPE" 
        TCGA-F2-7276         TCGA-F2-A44G         TCGA-F2-A44H 
"KIAA0430 WILD-TYPE" "KIAA0430 WILD-TYPE" "KIAA0430 WILD-TYPE" 
        TCGA-FB-A4P5         TCGA-FB-A4P6         TCGA-FB-A545 
"KIAA0430 WILD-TYPE" "KIAA0430 WILD-TYPE" "KIAA0430 WILD-TYPE" 
        TCGA-FB-A5VM         TCGA-FB-A78T         TCGA-FB-A7DR 
"KIAA0430 WILD-TYPE" "KIAA0430 WILD-TYPE" "KIAA0430 WILD-TYPE" 
        TCGA-FZ-5920         TCGA-FZ-5922         TCGA-FZ-5923 
"KIAA0430 WILD-TYPE" "KIAA0430 WILD-TYPE" "KIAA0430 WILD-TYPE" 
        TCGA-H6-8124         TCGA-H6-A45N         TCGA-H8-A6C1 
  "KIAA0430 MUTATED"   "KIAA0430 MUTATED" "KIAA0430 WILD-TYPE" 
        TCGA-HZ-7289         TCGA-HZ-7918         TCGA-HZ-7919 
"KIAA0430 WILD-TYPE" "KIAA0430 WILD-TYPE" "KIAA0430 WILD-TYPE" 
        TCGA-HZ-7922         TCGA-HZ-7923         TCGA-HZ-7924 
"KIAA0430 WILD-TYPE" "KIAA0430 WILD-TYPE" "KIAA0430 WILD-TYPE" 
        TCGA-HZ-7925         TCGA-HZ-7926         TCGA-HZ-8001 
"KIAA0430 WILD-TYPE" "KIAA0430 WILD-TYPE" "KIAA0430 WILD-TYPE" 
        TCGA-HZ-8002         TCGA-HZ-8003         TCGA-HZ-8005 
"KIAA0430 WILD-TYPE" "KIAA0430 WILD-TYPE"   "KIAA0430 MUTATED" 
        TCGA-HZ-8315         TCGA-HZ-8317         TCGA-HZ-8636 
"KIAA0430 WILD-TYPE" "KIAA0430 WILD-TYPE" "KIAA0430 WILD-TYPE" 
        TCGA-HZ-8638         TCGA-HZ-A49G         TCGA-HZ-A49H 
"KIAA0430 WILD-TYPE" "KIAA0430 WILD-TYPE" "KIAA0430 WILD-TYPE" 
        TCGA-HZ-A4BH         TCGA-HZ-A4BK         TCGA-IB-7644 
"KIAA0430 WILD-TYPE" "KIAA0430 WILD-TYPE" "KIAA0430 WILD-TYPE" 
        TCGA-IB-7645         TCGA-IB-7646         TCGA-IB-7647 
"KIAA0430 WILD-TYPE" "KIAA0430 WILD-TYPE" "KIAA0430 WILD-TYPE" 
        TCGA-IB-7649         TCGA-IB-7651         TCGA-IB-7652 
"KIAA0430 WILD-TYPE"   "KIAA0430 MUTATED" "KIAA0430 WILD-TYPE" 
        TCGA-IB-7885         TCGA-IB-7886         TCGA-IB-7887 
"KIAA0430 WILD-TYPE" "KIAA0430 WILD-TYPE"   "KIAA0430 MUTATED" 
        TCGA-IB-7888         TCGA-IB-7889         TCGA-IB-7890 
  "KIAA0430 MUTATED" "KIAA0430 WILD-TYPE" "KIAA0430 WILD-TYPE" 
        TCGA-IB-7891         TCGA-IB-7893         TCGA-IB-7897 
"KIAA0430 WILD-TYPE" "KIAA0430 WILD-TYPE" "KIAA0430 WILD-TYPE" 
        TCGA-IB-8126         TCGA-IB-8127         TCGA-IB-A5SO 
"KIAA0430 WILD-TYPE"   "KIAA0430 MUTATED" "KIAA0430 WILD-TYPE" 
        TCGA-IB-A5SP         TCGA-IB-A5SQ         TCGA-IB-A5SS 
  "KIAA0430 MUTATED" "KIAA0430 WILD-TYPE" "KIAA0430 WILD-TYPE" 
        TCGA-IB-A5ST         TCGA-IB-A6UG         TCGA-LB-A7SX 
"KIAA0430 WILD-TYPE" "KIAA0430 WILD-TYPE" "KIAA0430 WILD-TYPE" 
        TCGA-OE-A75W         TCGA-PZ-A5RE         TCGA-Q3-A5QY 
"KIAA0430 WILD-TYPE" "KIAA0430 WILD-TYPE" "KIAA0430 WILD-TYPE" 
        TCGA-US-A779         TCGA-US-A77E         TCGA-US-A77J 
"KIAA0430 WILD-TYPE" "KIAA0430 WILD-TYPE" "KIAA0430 WILD-TYPE" 
[1] "hr=" "1.1"
D308V2, continuous
                    vv
clus                 STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  KIAA0430 MUTATED          0        0         2         6         0        0
  KIAA0430 WILD-TYPE        1        4         9        45         2        3
D308V3, multiclass
                    vv
clus                 T1+T2 T3+T4
  KIAA0430 MUTATED       0     8
  KIAA0430 WILD-TYPE     6    58
D308V4, multiclass
       clus
vv      KIAA0430 MUTATED KIAA0430 WILD-TYPE
  T1+T2                0                  6
  T3+T4                8                 58
D308V5, binary
                    cls
clus                  0  1
  KIAA0430 MUTATED    2  6
  KIAA0430 WILD-TYPE 15 48
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  KIAA0430 MUTATED      2    6
  KIAA0430 WILD-TYPE   15   48
   clus
vv  KIAA0430 MUTATED KIAA0430 WILD-TYPE
  0                2                 15
  1                6                 48
                    vv
clus                 M0 M1 MX
  KIAA0430 MUTATED    6  0  2
  KIAA0430 WILD-TYPE 33  3 28
D308V6, multiclass
    clus
vv   KIAA0430 MUTATED KIAA0430 WILD-TYPE
  M0                6                 33
  M1                0                  3
  MX                2                 28
D308V7, binary
                    cls
clus                  0  1
  KIAA0430 MUTATED    5  3
  KIAA0430 WILD-TYPE 31 33
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  KIAA0430 MUTATED      5    3
  KIAA0430 WILD-TYPE   31   33
        clus
vv       KIAA0430 MUTATED KIAA0430 WILD-TYPE
  FEMALE                5                 31
  MALE                  3                 33
                    vv
clus                 PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  KIAA0430 MUTATED                                     7
  KIAA0430 WILD-TYPE                                  58
                    vv
clus                 PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  KIAA0430 MUTATED                                       1
  KIAA0430 WILD-TYPE                                     3
                    vv
clus                 PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  KIAA0430 MUTATED                                                  0
  KIAA0430 WILD-TYPE                                                2
D308V8, multiclass
                                                  clus
vv                                                 KIAA0430 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                             7
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                           1
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                0
                                                  clus
vv                                                 KIAA0430 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                              58
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                             3
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                  2
D308V9, continuous
D308V10, continuous
                    vv
clus                 R0 R1 RX
  KIAA0430 MUTATED    3  4  0
  KIAA0430 WILD-TYPE 39 20  2
D308V11, multiclass
    clus
vv   KIAA0430 MUTATED KIAA0430 WILD-TYPE
  R0                3                 39
  R1                4                 20
  RX                0                  2
D308V12, continuous

Clustering(309) Variable = MED12 MUTATION ANALYSIS
D309V1, survival
                 sevent
clus2              0  1
  MED12 MUTATED    4  2
  MED12 WILD-TYPE 36 27
  MED12 MUTATED MED12 WILD-TYPE 
              6              63 
  MED12 MUTATED MED12 WILD-TYPE 
              2              27 
$`MED12 MUTATED`
TCGA-F2-A44H TCGA-H6-A45N TCGA-HZ-8003 TCGA-HZ-8638 TCGA-HZ-A49H TCGA-IB-7651 
       19.27         7.66         0.69         2.99         0.95        19.82 

$`MED12 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-FB-A4P5 
       10.98         9.70        11.84         7.10         5.03         0.13 
TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR TCGA-FZ-5920 
       11.93        12.66         2.47         0.03         5.46         2.01 
TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 TCGA-H8-A6C1 TCGA-HZ-7289 TCGA-HZ-7918 
       36.20        20.81        12.89        13.02         7.89         0.92 
TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 
        0.66         0.13         0.26        12.13        11.87         0.26 
TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8636 
        0.62         0.79         3.95         0.92         0.53         0.16 
TCGA-HZ-A49G TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7646 
        0.76         6.38         1.51        11.41        49.38         4.77 
TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 
       21.90        15.35        15.65        27.98         4.04         3.62 
TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-7897 
       43.79        15.81        19.66        16.04         3.85        15.98 
TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS 
        0.56        17.16        10.82         9.86         7.20        15.12 
TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W TCGA-PZ-A5RE TCGA-Q3-A5QY 
        0.26         1.35         4.18         3.62         8.12        13.68 
TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
       16.80        14.14        18.67 

  MED12 MUTATED MED12 WILD-TYPE 
           0.69            0.03 
  MED12 MUTATED MED12 WILD-TYPE 
          19.82           49.38 
  MED12 MUTATED MED12 WILD-TYPE 
          5.325           7.890 
[1] "0.7 - 19.8 (5.3)" "0.0 - 49.4 (7.9)"
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"MED12 WILD-TYPE" "MED12 WILD-TYPE" "MED12 WILD-TYPE" "MED12 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"MED12 WILD-TYPE"   "MED12 MUTATED" "MED12 WILD-TYPE" "MED12 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"MED12 WILD-TYPE" "MED12 WILD-TYPE" "MED12 WILD-TYPE" "MED12 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"MED12 WILD-TYPE" "MED12 WILD-TYPE" "MED12 WILD-TYPE" "MED12 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
  "MED12 MUTATED" "MED12 WILD-TYPE" "MED12 WILD-TYPE" "MED12 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"MED12 WILD-TYPE" "MED12 WILD-TYPE" "MED12 WILD-TYPE" "MED12 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"MED12 WILD-TYPE" "MED12 WILD-TYPE" "MED12 WILD-TYPE" "MED12 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
  "MED12 MUTATED" "MED12 WILD-TYPE" "MED12 WILD-TYPE" "MED12 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"MED12 WILD-TYPE"   "MED12 MUTATED" "MED12 WILD-TYPE"   "MED12 MUTATED" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"MED12 WILD-TYPE" "MED12 WILD-TYPE" "MED12 WILD-TYPE" "MED12 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"MED12 WILD-TYPE" "MED12 WILD-TYPE" "MED12 WILD-TYPE"   "MED12 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"MED12 WILD-TYPE" "MED12 WILD-TYPE" "MED12 WILD-TYPE" "MED12 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"MED12 WILD-TYPE" "MED12 WILD-TYPE" "MED12 WILD-TYPE" "MED12 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"MED12 WILD-TYPE" "MED12 WILD-TYPE" "MED12 WILD-TYPE" "MED12 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"MED12 WILD-TYPE" "MED12 WILD-TYPE" "MED12 WILD-TYPE" "MED12 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"MED12 WILD-TYPE" "MED12 WILD-TYPE" "MED12 WILD-TYPE" "MED12 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"MED12 WILD-TYPE" "MED12 WILD-TYPE" "MED12 WILD-TYPE" "MED12 WILD-TYPE" 
     TCGA-US-A77J 
"MED12 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"MED12 WILD-TYPE" "MED12 WILD-TYPE" "MED12 WILD-TYPE" "MED12 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"MED12 WILD-TYPE"   "MED12 MUTATED" "MED12 WILD-TYPE" "MED12 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"MED12 WILD-TYPE" "MED12 WILD-TYPE" "MED12 WILD-TYPE" "MED12 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"MED12 WILD-TYPE" "MED12 WILD-TYPE" "MED12 WILD-TYPE" "MED12 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
  "MED12 MUTATED" "MED12 WILD-TYPE" "MED12 WILD-TYPE" "MED12 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"MED12 WILD-TYPE" "MED12 WILD-TYPE" "MED12 WILD-TYPE" "MED12 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"MED12 WILD-TYPE" "MED12 WILD-TYPE" "MED12 WILD-TYPE" "MED12 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
  "MED12 MUTATED" "MED12 WILD-TYPE" "MED12 WILD-TYPE" "MED12 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"MED12 WILD-TYPE"   "MED12 MUTATED" "MED12 WILD-TYPE"   "MED12 MUTATED" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"MED12 WILD-TYPE" "MED12 WILD-TYPE" "MED12 WILD-TYPE" "MED12 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"MED12 WILD-TYPE" "MED12 WILD-TYPE" "MED12 WILD-TYPE"   "MED12 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"MED12 WILD-TYPE" "MED12 WILD-TYPE" "MED12 WILD-TYPE" "MED12 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"MED12 WILD-TYPE" "MED12 WILD-TYPE" "MED12 WILD-TYPE" "MED12 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"MED12 WILD-TYPE" "MED12 WILD-TYPE" "MED12 WILD-TYPE" "MED12 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"MED12 WILD-TYPE" "MED12 WILD-TYPE" "MED12 WILD-TYPE" "MED12 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"MED12 WILD-TYPE" "MED12 WILD-TYPE" "MED12 WILD-TYPE" "MED12 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"MED12 WILD-TYPE" "MED12 WILD-TYPE" "MED12 WILD-TYPE" "MED12 WILD-TYPE" 
     TCGA-US-A77J 
"MED12 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"MED12 WILD-TYPE" "MED12 WILD-TYPE" "MED12 WILD-TYPE" "MED12 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"MED12 WILD-TYPE"   "MED12 MUTATED" "MED12 WILD-TYPE" "MED12 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"MED12 WILD-TYPE" "MED12 WILD-TYPE" "MED12 WILD-TYPE" "MED12 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"MED12 WILD-TYPE" "MED12 WILD-TYPE" "MED12 WILD-TYPE" "MED12 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
  "MED12 MUTATED" "MED12 WILD-TYPE" "MED12 WILD-TYPE" "MED12 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"MED12 WILD-TYPE" "MED12 WILD-TYPE" "MED12 WILD-TYPE" "MED12 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"MED12 WILD-TYPE" "MED12 WILD-TYPE" "MED12 WILD-TYPE" "MED12 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
  "MED12 MUTATED" "MED12 WILD-TYPE" "MED12 WILD-TYPE" "MED12 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"MED12 WILD-TYPE"   "MED12 MUTATED" "MED12 WILD-TYPE"   "MED12 MUTATED" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"MED12 WILD-TYPE" "MED12 WILD-TYPE" "MED12 WILD-TYPE" "MED12 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"MED12 WILD-TYPE" "MED12 WILD-TYPE" "MED12 WILD-TYPE"   "MED12 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"MED12 WILD-TYPE" "MED12 WILD-TYPE" "MED12 WILD-TYPE" "MED12 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"MED12 WILD-TYPE" "MED12 WILD-TYPE" "MED12 WILD-TYPE" "MED12 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"MED12 WILD-TYPE" "MED12 WILD-TYPE" "MED12 WILD-TYPE" "MED12 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"MED12 WILD-TYPE" "MED12 WILD-TYPE" "MED12 WILD-TYPE" "MED12 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"MED12 WILD-TYPE" "MED12 WILD-TYPE" "MED12 WILD-TYPE" "MED12 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"MED12 WILD-TYPE" "MED12 WILD-TYPE" "MED12 WILD-TYPE" "MED12 WILD-TYPE" 
     TCGA-US-A77J 
"MED12 WILD-TYPE" 
[1] "hr=" "1.2"
D309V2, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  MED12 MUTATED          1        0         1         4         0        0
  MED12 WILD-TYPE        0        4        10        47         2        3
D309V3, multiclass
                 vv
clus              T1+T2 T3+T4
  MED12 MUTATED       1     5
  MED12 WILD-TYPE     5    61
D309V4, multiclass
       clus
vv      MED12 MUTATED MED12 WILD-TYPE
  T1+T2             1               5
  T3+T4             5              61
D309V5, binary
                 cls
clus               0  1
  MED12 MUTATED    2  4
  MED12 WILD-TYPE 15 50
[1] "tbl2"
                 cls
clus              [,1] [,2]
  MED12 MUTATED      2    4
  MED12 WILD-TYPE   15   50
   clus
vv  MED12 MUTATED MED12 WILD-TYPE
  0             2              15
  1             4              50
                 vv
clus              M0 M1 MX
  MED12 MUTATED    2  0  4
  MED12 WILD-TYPE 37  3 26
D309V6, multiclass
    clus
vv   MED12 MUTATED MED12 WILD-TYPE
  M0             2              37
  M1             0               3
  MX             4              26
D309V7, binary
                 cls
clus               0  1
  MED12 MUTATED    5  1
  MED12 WILD-TYPE 31 35
[1] "tbl2"
                 cls
clus              [,1] [,2]
  MED12 MUTATED      5    1
  MED12 WILD-TYPE   31   35
        clus
vv       MED12 MUTATED MED12 WILD-TYPE
  FEMALE             5              31
  MALE               1              35
                 vv
clus              PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  MED12 MUTATED                                     4
  MED12 WILD-TYPE                                  61
                 vv
clus              PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  MED12 MUTATED                                       1
  MED12 WILD-TYPE                                     3
                 vv
clus              PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  MED12 MUTATED                                                  1
  MED12 WILD-TYPE                                                1
D309V8, multiclass
                                                  clus
vv                                                 MED12 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                          4
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                        1
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA             1
                                                  clus
vv                                                 MED12 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                           61
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                          3
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA               1
D309V9, continuous
[1] "Remove cluster labels:" "MED12 MUTATED"         
clus
  MED12 MUTATED MED12 WILD-TYPE 
              2              20 
     TCGA-F2-6880      TCGA-FB-A4P5      TCGA-FB-A4P6      TCGA-FB-A5VM 
"MED12 WILD-TYPE" "MED12 WILD-TYPE" "MED12 WILD-TYPE" "MED12 WILD-TYPE" 
     TCGA-FB-A78T      TCGA-FB-A7DR      TCGA-H6-8124      TCGA-H8-A6C1 
"MED12 WILD-TYPE" "MED12 WILD-TYPE" "MED12 WILD-TYPE" "MED12 WILD-TYPE" 
     TCGA-IB-7644      TCGA-IB-7649      TCGA-IB-7885      TCGA-IB-7886 
"MED12 WILD-TYPE" "MED12 WILD-TYPE" "MED12 WILD-TYPE" "MED12 WILD-TYPE" 
     TCGA-IB-7887      TCGA-IB-7891      TCGA-IB-8126      TCGA-IB-8127 
"MED12 WILD-TYPE" "MED12 WILD-TYPE" "MED12 WILD-TYPE" "MED12 WILD-TYPE" 
     TCGA-IB-A5SS      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"MED12 WILD-TYPE" "MED12 WILD-TYPE" "MED12 WILD-TYPE" "MED12 WILD-TYPE" 
D309V10, continuous
[1] "Remove cluster labels:" "MED12 MUTATED"         
clus
  MED12 MUTATED MED12 WILD-TYPE 
              1              18 
     TCGA-FB-A4P5      TCGA-FB-A4P6      TCGA-FB-A5VM      TCGA-FB-A78T 
"MED12 WILD-TYPE" "MED12 WILD-TYPE" "MED12 WILD-TYPE" "MED12 WILD-TYPE" 
     TCGA-FB-A7DR      TCGA-H6-8124      TCGA-H8-A6C1      TCGA-IB-7644 
"MED12 WILD-TYPE" "MED12 WILD-TYPE" "MED12 WILD-TYPE" "MED12 WILD-TYPE" 
     TCGA-IB-7649      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7891 
"MED12 WILD-TYPE" "MED12 WILD-TYPE" "MED12 WILD-TYPE" "MED12 WILD-TYPE" 
     TCGA-IB-8126      TCGA-IB-8127      TCGA-IB-A5SS      TCGA-IB-A6UG 
"MED12 WILD-TYPE" "MED12 WILD-TYPE" "MED12 WILD-TYPE" "MED12 WILD-TYPE" 
     TCGA-LB-A7SX      TCGA-OE-A75W 
"MED12 WILD-TYPE" "MED12 WILD-TYPE" 
                 vv
clus              R0 R1 RX
  MED12 MUTATED    5  0  0
  MED12 WILD-TYPE 37 24  2
D309V11, multiclass
    clus
vv   MED12 MUTATED MED12 WILD-TYPE
  R0             5              37
  R1             0              24
  RX             0               2
D309V12, continuous

Clustering(310) Variable = WIPF2 MUTATION ANALYSIS
D310V1, survival
                 sevent
clus2              0  1
  WIPF2 MUTATED    2  2
  WIPF2 WILD-TYPE 38 27
  WIPF2 MUTATED WIPF2 WILD-TYPE 
              4              65 
  WIPF2 MUTATED WIPF2 WILD-TYPE 
              2              27 
$`WIPF2 MUTATED`
TCGA-FB-A4P5 TCGA-HZ-7918 TCGA-HZ-8002 TCGA-IB-7651 
        0.13         0.92         0.79        19.82 

$`WIPF2 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR TCGA-FZ-5920 
       11.93        12.66         2.47         0.03         5.46         2.01 
TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7289 
       36.20        20.81        12.89         7.66        13.02         7.89 
TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 
        0.66         0.13         0.26        12.13        11.87         0.26 
TCGA-HZ-8001 TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8636 
        0.62         0.69         3.95         0.92         0.53         0.16 
TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 
        2.99         0.76         0.95         6.38         1.51        11.41 
TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7652 TCGA-IB-7885 
       49.38         4.77        21.90        15.35        15.65        27.98 
TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 
        4.04         3.62        43.79        15.81        19.66        16.04 
TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP 
        3.85        15.98         0.56        17.16        10.82         9.86 
TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W 
        7.20        15.12         0.26         1.35         4.18         3.62 
TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
        8.12        13.68        16.80        14.14        18.67 

  WIPF2 MUTATED WIPF2 WILD-TYPE 
           0.13            0.03 
  WIPF2 MUTATED WIPF2 WILD-TYPE 
          19.82           49.38 
  WIPF2 MUTATED WIPF2 WILD-TYPE 
          0.855           7.890 
[1] "0.1 - 19.8 (0.9)" "0.0 - 49.4 (7.9)"
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"WIPF2 WILD-TYPE" "WIPF2 WILD-TYPE" "WIPF2 WILD-TYPE" "WIPF2 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"WIPF2 WILD-TYPE" "WIPF2 WILD-TYPE"   "WIPF2 MUTATED" "WIPF2 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"WIPF2 WILD-TYPE" "WIPF2 WILD-TYPE" "WIPF2 WILD-TYPE" "WIPF2 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"WIPF2 WILD-TYPE" "WIPF2 WILD-TYPE" "WIPF2 WILD-TYPE" "WIPF2 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"WIPF2 WILD-TYPE" "WIPF2 WILD-TYPE" "WIPF2 WILD-TYPE"   "WIPF2 MUTATED" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"WIPF2 WILD-TYPE" "WIPF2 WILD-TYPE" "WIPF2 WILD-TYPE" "WIPF2 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"WIPF2 WILD-TYPE" "WIPF2 WILD-TYPE" "WIPF2 WILD-TYPE"   "WIPF2 MUTATED" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"WIPF2 WILD-TYPE" "WIPF2 WILD-TYPE" "WIPF2 WILD-TYPE" "WIPF2 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"WIPF2 WILD-TYPE" "WIPF2 WILD-TYPE" "WIPF2 WILD-TYPE" "WIPF2 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"WIPF2 WILD-TYPE" "WIPF2 WILD-TYPE" "WIPF2 WILD-TYPE" "WIPF2 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"WIPF2 WILD-TYPE" "WIPF2 WILD-TYPE" "WIPF2 WILD-TYPE"   "WIPF2 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"WIPF2 WILD-TYPE" "WIPF2 WILD-TYPE" "WIPF2 WILD-TYPE" "WIPF2 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"WIPF2 WILD-TYPE" "WIPF2 WILD-TYPE" "WIPF2 WILD-TYPE" "WIPF2 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"WIPF2 WILD-TYPE" "WIPF2 WILD-TYPE" "WIPF2 WILD-TYPE" "WIPF2 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"WIPF2 WILD-TYPE" "WIPF2 WILD-TYPE" "WIPF2 WILD-TYPE" "WIPF2 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"WIPF2 WILD-TYPE" "WIPF2 WILD-TYPE" "WIPF2 WILD-TYPE" "WIPF2 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"WIPF2 WILD-TYPE" "WIPF2 WILD-TYPE" "WIPF2 WILD-TYPE" "WIPF2 WILD-TYPE" 
     TCGA-US-A77J 
"WIPF2 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"WIPF2 WILD-TYPE" "WIPF2 WILD-TYPE" "WIPF2 WILD-TYPE" "WIPF2 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"WIPF2 WILD-TYPE" "WIPF2 WILD-TYPE"   "WIPF2 MUTATED" "WIPF2 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"WIPF2 WILD-TYPE" "WIPF2 WILD-TYPE" "WIPF2 WILD-TYPE" "WIPF2 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"WIPF2 WILD-TYPE" "WIPF2 WILD-TYPE" "WIPF2 WILD-TYPE" "WIPF2 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"WIPF2 WILD-TYPE" "WIPF2 WILD-TYPE" "WIPF2 WILD-TYPE"   "WIPF2 MUTATED" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"WIPF2 WILD-TYPE" "WIPF2 WILD-TYPE" "WIPF2 WILD-TYPE" "WIPF2 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"WIPF2 WILD-TYPE" "WIPF2 WILD-TYPE" "WIPF2 WILD-TYPE"   "WIPF2 MUTATED" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"WIPF2 WILD-TYPE" "WIPF2 WILD-TYPE" "WIPF2 WILD-TYPE" "WIPF2 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"WIPF2 WILD-TYPE" "WIPF2 WILD-TYPE" "WIPF2 WILD-TYPE" "WIPF2 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"WIPF2 WILD-TYPE" "WIPF2 WILD-TYPE" "WIPF2 WILD-TYPE" "WIPF2 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"WIPF2 WILD-TYPE" "WIPF2 WILD-TYPE" "WIPF2 WILD-TYPE"   "WIPF2 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"WIPF2 WILD-TYPE" "WIPF2 WILD-TYPE" "WIPF2 WILD-TYPE" "WIPF2 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"WIPF2 WILD-TYPE" "WIPF2 WILD-TYPE" "WIPF2 WILD-TYPE" "WIPF2 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"WIPF2 WILD-TYPE" "WIPF2 WILD-TYPE" "WIPF2 WILD-TYPE" "WIPF2 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"WIPF2 WILD-TYPE" "WIPF2 WILD-TYPE" "WIPF2 WILD-TYPE" "WIPF2 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"WIPF2 WILD-TYPE" "WIPF2 WILD-TYPE" "WIPF2 WILD-TYPE" "WIPF2 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"WIPF2 WILD-TYPE" "WIPF2 WILD-TYPE" "WIPF2 WILD-TYPE" "WIPF2 WILD-TYPE" 
     TCGA-US-A77J 
"WIPF2 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"WIPF2 WILD-TYPE" "WIPF2 WILD-TYPE" "WIPF2 WILD-TYPE" "WIPF2 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"WIPF2 WILD-TYPE" "WIPF2 WILD-TYPE"   "WIPF2 MUTATED" "WIPF2 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"WIPF2 WILD-TYPE" "WIPF2 WILD-TYPE" "WIPF2 WILD-TYPE" "WIPF2 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"WIPF2 WILD-TYPE" "WIPF2 WILD-TYPE" "WIPF2 WILD-TYPE" "WIPF2 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"WIPF2 WILD-TYPE" "WIPF2 WILD-TYPE" "WIPF2 WILD-TYPE"   "WIPF2 MUTATED" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"WIPF2 WILD-TYPE" "WIPF2 WILD-TYPE" "WIPF2 WILD-TYPE" "WIPF2 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"WIPF2 WILD-TYPE" "WIPF2 WILD-TYPE" "WIPF2 WILD-TYPE"   "WIPF2 MUTATED" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"WIPF2 WILD-TYPE" "WIPF2 WILD-TYPE" "WIPF2 WILD-TYPE" "WIPF2 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"WIPF2 WILD-TYPE" "WIPF2 WILD-TYPE" "WIPF2 WILD-TYPE" "WIPF2 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"WIPF2 WILD-TYPE" "WIPF2 WILD-TYPE" "WIPF2 WILD-TYPE" "WIPF2 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"WIPF2 WILD-TYPE" "WIPF2 WILD-TYPE" "WIPF2 WILD-TYPE"   "WIPF2 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"WIPF2 WILD-TYPE" "WIPF2 WILD-TYPE" "WIPF2 WILD-TYPE" "WIPF2 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"WIPF2 WILD-TYPE" "WIPF2 WILD-TYPE" "WIPF2 WILD-TYPE" "WIPF2 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"WIPF2 WILD-TYPE" "WIPF2 WILD-TYPE" "WIPF2 WILD-TYPE" "WIPF2 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"WIPF2 WILD-TYPE" "WIPF2 WILD-TYPE" "WIPF2 WILD-TYPE" "WIPF2 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"WIPF2 WILD-TYPE" "WIPF2 WILD-TYPE" "WIPF2 WILD-TYPE" "WIPF2 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"WIPF2 WILD-TYPE" "WIPF2 WILD-TYPE" "WIPF2 WILD-TYPE" "WIPF2 WILD-TYPE" 
     TCGA-US-A77J 
"WIPF2 WILD-TYPE" 
[1] "hr=" "1.8"
D310V2, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  WIPF2 MUTATED          0        0         0         4         0        0
  WIPF2 WILD-TYPE        1        4        11        47         2        3
D310V3, multiclass
                 vv
clus              T1+T2 T3+T4
  WIPF2 MUTATED       0     4
  WIPF2 WILD-TYPE     6    62
D310V4, multiclass
       clus
vv      WIPF2 MUTATED WIPF2 WILD-TYPE
  T1+T2             0               6
  T3+T4             4              62
D310V5, binary
                 cls
clus               0  1
  WIPF2 MUTATED    0  4
  WIPF2 WILD-TYPE 17 50
[1] "tbl2"
                 cls
clus              [,1] [,2]
  WIPF2 MUTATED      0    4
  WIPF2 WILD-TYPE   17   50
   clus
vv  WIPF2 MUTATED WIPF2 WILD-TYPE
  0             0              17
  1             4              50
                 vv
clus              M0 M1 MX
  WIPF2 MUTATED    2  0  2
  WIPF2 WILD-TYPE 37  3 28
D310V6, multiclass
    clus
vv   WIPF2 MUTATED WIPF2 WILD-TYPE
  M0             2              37
  M1             0               3
  MX             2              28
D310V7, binary
                 cls
clus               0  1
  WIPF2 MUTATED    2  2
  WIPF2 WILD-TYPE 34 34
[1] "tbl2"
                 cls
clus              [,1] [,2]
  WIPF2 MUTATED      2    2
  WIPF2 WILD-TYPE   34   34
        clus
vv       WIPF2 MUTATED WIPF2 WILD-TYPE
  FEMALE             2              34
  MALE               2              34
                 vv
clus              PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  WIPF2 MUTATED                                     4
  WIPF2 WILD-TYPE                                  61
                 vv
clus              PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  WIPF2 MUTATED                                       0
  WIPF2 WILD-TYPE                                     4
                 vv
clus              PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  WIPF2 MUTATED                                                  0
  WIPF2 WILD-TYPE                                                2
D310V8, multiclass
                                                  clus
vv                                                 WIPF2 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                          4
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                        0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA             0
                                                  clus
vv                                                 WIPF2 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                           61
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                          4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA               2
D310V9, continuous
[1] "Remove cluster labels:" "WIPF2 MUTATED"         
clus
  WIPF2 MUTATED WIPF2 WILD-TYPE 
              2              20 
     TCGA-F2-6880      TCGA-FB-A4P6      TCGA-FB-A5VM      TCGA-FB-A78T 
"WIPF2 WILD-TYPE" "WIPF2 WILD-TYPE" "WIPF2 WILD-TYPE" "WIPF2 WILD-TYPE" 
     TCGA-FB-A7DR      TCGA-H6-8124      TCGA-H6-A45N      TCGA-H8-A6C1 
"WIPF2 WILD-TYPE" "WIPF2 WILD-TYPE" "WIPF2 WILD-TYPE" "WIPF2 WILD-TYPE" 
     TCGA-IB-7644      TCGA-IB-7649      TCGA-IB-7885      TCGA-IB-7886 
"WIPF2 WILD-TYPE" "WIPF2 WILD-TYPE" "WIPF2 WILD-TYPE" "WIPF2 WILD-TYPE" 
     TCGA-IB-7887      TCGA-IB-7891      TCGA-IB-8126      TCGA-IB-8127 
"WIPF2 WILD-TYPE" "WIPF2 WILD-TYPE" "WIPF2 WILD-TYPE" "WIPF2 WILD-TYPE" 
     TCGA-IB-A5SS      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"WIPF2 WILD-TYPE" "WIPF2 WILD-TYPE" "WIPF2 WILD-TYPE" "WIPF2 WILD-TYPE" 
D310V10, continuous
[1] "Remove cluster labels:" "WIPF2 MUTATED"         
clus
  WIPF2 MUTATED WIPF2 WILD-TYPE 
              2              17 
     TCGA-FB-A4P6      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"WIPF2 WILD-TYPE" "WIPF2 WILD-TYPE" "WIPF2 WILD-TYPE" "WIPF2 WILD-TYPE" 
     TCGA-H6-8124      TCGA-H8-A6C1      TCGA-IB-7644      TCGA-IB-7649 
"WIPF2 WILD-TYPE" "WIPF2 WILD-TYPE" "WIPF2 WILD-TYPE" "WIPF2 WILD-TYPE" 
     TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7891      TCGA-IB-8126 
"WIPF2 WILD-TYPE" "WIPF2 WILD-TYPE" "WIPF2 WILD-TYPE" "WIPF2 WILD-TYPE" 
     TCGA-IB-8127      TCGA-IB-A5SS      TCGA-IB-A6UG      TCGA-LB-A7SX 
"WIPF2 WILD-TYPE" "WIPF2 WILD-TYPE" "WIPF2 WILD-TYPE" "WIPF2 WILD-TYPE" 
     TCGA-OE-A75W 
"WIPF2 WILD-TYPE" 
                 vv
clus              R0 R1 RX
  WIPF2 MUTATED    4  0  0
  WIPF2 WILD-TYPE 38 24  2
D310V11, multiclass
    clus
vv   WIPF2 MUTATED WIPF2 WILD-TYPE
  R0             4              38
  R1             0              24
  RX             0               2
D310V12, continuous

Clustering(311) Variable = IKZF5 MUTATION ANALYSIS
D311V1, survival
                 sevent
clus2              0  1
  IKZF5 MUTATED    3  0
  IKZF5 WILD-TYPE 37 29
  IKZF5 MUTATED IKZF5 WILD-TYPE 
              3              66 
  IKZF5 MUTATED IKZF5 WILD-TYPE 
              0              29 
$`IKZF5 MUTATED`
TCGA-HZ-7289 TCGA-HZ-A49G TCGA-IB-8127 
        7.89         0.76        17.16 

$`IKZF5 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P5 TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR 
        0.13        11.93        12.66         2.47         0.03         5.46 
TCGA-FZ-5920 TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 
        2.01        36.20        20.81        12.89         7.66        13.02 
TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 
        0.92         0.66         0.13         0.26        12.13        11.87 
TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 
        0.26         0.62         0.79         0.69         3.95         0.92 
TCGA-HZ-8317 TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK 
        0.53         0.16         2.99         0.95         6.38         1.51 
TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7651 
       11.41        49.38         4.77        21.90        15.35        19.82 
TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 
       15.65        27.98         4.04         3.62        43.79        15.81 
TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-A5SO 
       19.66        16.04         3.85        15.98         0.56        10.82 
TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX 
        9.86         7.20        15.12         0.26         1.35         4.18 
TCGA-OE-A75W TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
        3.62         8.12        13.68        16.80        14.14        18.67 

  IKZF5 MUTATED IKZF5 WILD-TYPE 
           0.76            0.03 
  IKZF5 MUTATED IKZF5 WILD-TYPE 
          17.16           49.38 
  IKZF5 MUTATED IKZF5 WILD-TYPE 
           7.89            7.43 
[1] "0.8 - 17.2 (7.9)" "0.0 - 49.4 (7.4)"
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"IKZF5 WILD-TYPE" "IKZF5 WILD-TYPE" "IKZF5 WILD-TYPE" "IKZF5 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"IKZF5 WILD-TYPE" "IKZF5 WILD-TYPE" "IKZF5 WILD-TYPE" "IKZF5 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"IKZF5 WILD-TYPE" "IKZF5 WILD-TYPE" "IKZF5 WILD-TYPE" "IKZF5 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"IKZF5 WILD-TYPE" "IKZF5 WILD-TYPE" "IKZF5 WILD-TYPE" "IKZF5 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"IKZF5 WILD-TYPE" "IKZF5 WILD-TYPE"   "IKZF5 MUTATED" "IKZF5 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"IKZF5 WILD-TYPE" "IKZF5 WILD-TYPE" "IKZF5 WILD-TYPE" "IKZF5 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"IKZF5 WILD-TYPE" "IKZF5 WILD-TYPE" "IKZF5 WILD-TYPE" "IKZF5 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"IKZF5 WILD-TYPE" "IKZF5 WILD-TYPE" "IKZF5 WILD-TYPE" "IKZF5 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"IKZF5 WILD-TYPE" "IKZF5 WILD-TYPE"   "IKZF5 MUTATED" "IKZF5 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"IKZF5 WILD-TYPE" "IKZF5 WILD-TYPE" "IKZF5 WILD-TYPE" "IKZF5 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"IKZF5 WILD-TYPE" "IKZF5 WILD-TYPE" "IKZF5 WILD-TYPE" "IKZF5 WILD-TYPE" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"IKZF5 WILD-TYPE" "IKZF5 WILD-TYPE" "IKZF5 WILD-TYPE" "IKZF5 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"IKZF5 WILD-TYPE" "IKZF5 WILD-TYPE" "IKZF5 WILD-TYPE" "IKZF5 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"IKZF5 WILD-TYPE" "IKZF5 WILD-TYPE" "IKZF5 WILD-TYPE"   "IKZF5 MUTATED" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"IKZF5 WILD-TYPE" "IKZF5 WILD-TYPE" "IKZF5 WILD-TYPE" "IKZF5 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"IKZF5 WILD-TYPE" "IKZF5 WILD-TYPE" "IKZF5 WILD-TYPE" "IKZF5 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"IKZF5 WILD-TYPE" "IKZF5 WILD-TYPE" "IKZF5 WILD-TYPE" "IKZF5 WILD-TYPE" 
     TCGA-US-A77J 
"IKZF5 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"IKZF5 WILD-TYPE" "IKZF5 WILD-TYPE" "IKZF5 WILD-TYPE" "IKZF5 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"IKZF5 WILD-TYPE" "IKZF5 WILD-TYPE" "IKZF5 WILD-TYPE" "IKZF5 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"IKZF5 WILD-TYPE" "IKZF5 WILD-TYPE" "IKZF5 WILD-TYPE" "IKZF5 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"IKZF5 WILD-TYPE" "IKZF5 WILD-TYPE" "IKZF5 WILD-TYPE" "IKZF5 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"IKZF5 WILD-TYPE" "IKZF5 WILD-TYPE"   "IKZF5 MUTATED" "IKZF5 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"IKZF5 WILD-TYPE" "IKZF5 WILD-TYPE" "IKZF5 WILD-TYPE" "IKZF5 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"IKZF5 WILD-TYPE" "IKZF5 WILD-TYPE" "IKZF5 WILD-TYPE" "IKZF5 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"IKZF5 WILD-TYPE" "IKZF5 WILD-TYPE" "IKZF5 WILD-TYPE" "IKZF5 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"IKZF5 WILD-TYPE" "IKZF5 WILD-TYPE"   "IKZF5 MUTATED" "IKZF5 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"IKZF5 WILD-TYPE" "IKZF5 WILD-TYPE" "IKZF5 WILD-TYPE" "IKZF5 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"IKZF5 WILD-TYPE" "IKZF5 WILD-TYPE" "IKZF5 WILD-TYPE" "IKZF5 WILD-TYPE" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"IKZF5 WILD-TYPE" "IKZF5 WILD-TYPE" "IKZF5 WILD-TYPE" "IKZF5 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"IKZF5 WILD-TYPE" "IKZF5 WILD-TYPE" "IKZF5 WILD-TYPE" "IKZF5 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"IKZF5 WILD-TYPE" "IKZF5 WILD-TYPE" "IKZF5 WILD-TYPE"   "IKZF5 MUTATED" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"IKZF5 WILD-TYPE" "IKZF5 WILD-TYPE" "IKZF5 WILD-TYPE" "IKZF5 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"IKZF5 WILD-TYPE" "IKZF5 WILD-TYPE" "IKZF5 WILD-TYPE" "IKZF5 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"IKZF5 WILD-TYPE" "IKZF5 WILD-TYPE" "IKZF5 WILD-TYPE" "IKZF5 WILD-TYPE" 
     TCGA-US-A77J 
"IKZF5 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"IKZF5 WILD-TYPE" "IKZF5 WILD-TYPE" "IKZF5 WILD-TYPE" "IKZF5 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"IKZF5 WILD-TYPE" "IKZF5 WILD-TYPE" "IKZF5 WILD-TYPE" "IKZF5 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"IKZF5 WILD-TYPE" "IKZF5 WILD-TYPE" "IKZF5 WILD-TYPE" "IKZF5 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"IKZF5 WILD-TYPE" "IKZF5 WILD-TYPE" "IKZF5 WILD-TYPE" "IKZF5 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"IKZF5 WILD-TYPE" "IKZF5 WILD-TYPE"   "IKZF5 MUTATED" "IKZF5 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"IKZF5 WILD-TYPE" "IKZF5 WILD-TYPE" "IKZF5 WILD-TYPE" "IKZF5 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"IKZF5 WILD-TYPE" "IKZF5 WILD-TYPE" "IKZF5 WILD-TYPE" "IKZF5 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"IKZF5 WILD-TYPE" "IKZF5 WILD-TYPE" "IKZF5 WILD-TYPE" "IKZF5 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"IKZF5 WILD-TYPE" "IKZF5 WILD-TYPE"   "IKZF5 MUTATED" "IKZF5 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"IKZF5 WILD-TYPE" "IKZF5 WILD-TYPE" "IKZF5 WILD-TYPE" "IKZF5 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"IKZF5 WILD-TYPE" "IKZF5 WILD-TYPE" "IKZF5 WILD-TYPE" "IKZF5 WILD-TYPE" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"IKZF5 WILD-TYPE" "IKZF5 WILD-TYPE" "IKZF5 WILD-TYPE" "IKZF5 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"IKZF5 WILD-TYPE" "IKZF5 WILD-TYPE" "IKZF5 WILD-TYPE" "IKZF5 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"IKZF5 WILD-TYPE" "IKZF5 WILD-TYPE" "IKZF5 WILD-TYPE"   "IKZF5 MUTATED" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"IKZF5 WILD-TYPE" "IKZF5 WILD-TYPE" "IKZF5 WILD-TYPE" "IKZF5 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"IKZF5 WILD-TYPE" "IKZF5 WILD-TYPE" "IKZF5 WILD-TYPE" "IKZF5 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"IKZF5 WILD-TYPE" "IKZF5 WILD-TYPE" "IKZF5 WILD-TYPE" "IKZF5 WILD-TYPE" 
     TCGA-US-A77J 
"IKZF5 WILD-TYPE" 
[1] "hr="     "2.6e+07"
D311V2, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  IKZF5 MUTATED          0        0         0         3         0        0
  IKZF5 WILD-TYPE        1        4        11        48         2        3
D311V3, multiclass
                 vv
clus              T1+T2 T3+T4
  IKZF5 MUTATED       1     2
  IKZF5 WILD-TYPE     5    64
D311V4, multiclass
       clus
vv      IKZF5 MUTATED IKZF5 WILD-TYPE
  T1+T2             1               5
  T3+T4             2              64
D311V5, binary
                 cls
clus               0  1
  IKZF5 MUTATED    0  3
  IKZF5 WILD-TYPE 17 51
[1] "tbl2"
                 cls
clus              [,1] [,2]
  IKZF5 MUTATED      0    3
  IKZF5 WILD-TYPE   17   51
   clus
vv  IKZF5 MUTATED IKZF5 WILD-TYPE
  0             0              17
  1             3              51
                 vv
clus              M0 M1 MX
  IKZF5 MUTATED    1  0  2
  IKZF5 WILD-TYPE 38  3 28
D311V6, multiclass
    clus
vv   IKZF5 MUTATED IKZF5 WILD-TYPE
  M0             1              38
  M1             0               3
  MX             2              28
D311V7, binary
                 cls
clus               0  1
  IKZF5 MUTATED    1  2
  IKZF5 WILD-TYPE 35 34
[1] "tbl2"
                 cls
clus              [,1] [,2]
  IKZF5 MUTATED      1    2
  IKZF5 WILD-TYPE   35   34
        clus
vv       IKZF5 MUTATED IKZF5 WILD-TYPE
  FEMALE             1              35
  MALE               2              34
                 vv
clus              PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  IKZF5 MUTATED                                     2
  IKZF5 WILD-TYPE                                  63
                 vv
clus              PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  IKZF5 MUTATED                                       1
  IKZF5 WILD-TYPE                                     3
                 vv
clus              PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  IKZF5 MUTATED                                                  0
  IKZF5 WILD-TYPE                                                2
D311V8, multiclass
                                                  clus
vv                                                 IKZF5 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                          2
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                        1
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA             0
                                                  clus
vv                                                 IKZF5 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                           63
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                          3
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA               2
D311V9, continuous
[1] "Remove cluster labels:" "IKZF5 MUTATED"         
clus
  IKZF5 MUTATED IKZF5 WILD-TYPE 
              1              21 
     TCGA-F2-6880      TCGA-FB-A4P5      TCGA-FB-A4P6      TCGA-FB-A5VM 
"IKZF5 WILD-TYPE" "IKZF5 WILD-TYPE" "IKZF5 WILD-TYPE" "IKZF5 WILD-TYPE" 
     TCGA-FB-A78T      TCGA-FB-A7DR      TCGA-H6-8124      TCGA-H6-A45N 
"IKZF5 WILD-TYPE" "IKZF5 WILD-TYPE" "IKZF5 WILD-TYPE" "IKZF5 WILD-TYPE" 
     TCGA-H8-A6C1      TCGA-IB-7644      TCGA-IB-7649      TCGA-IB-7651 
"IKZF5 WILD-TYPE" "IKZF5 WILD-TYPE" "IKZF5 WILD-TYPE" "IKZF5 WILD-TYPE" 
     TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887      TCGA-IB-7891 
"IKZF5 WILD-TYPE" "IKZF5 WILD-TYPE" "IKZF5 WILD-TYPE" "IKZF5 WILD-TYPE" 
     TCGA-IB-8126      TCGA-IB-A5SS      TCGA-IB-A6UG      TCGA-LB-A7SX 
"IKZF5 WILD-TYPE" "IKZF5 WILD-TYPE" "IKZF5 WILD-TYPE" "IKZF5 WILD-TYPE" 
     TCGA-OE-A75W 
"IKZF5 WILD-TYPE" 
D311V10, continuous
[1] "Remove cluster labels:" "IKZF5 MUTATED"         
clus
  IKZF5 MUTATED IKZF5 WILD-TYPE 
              1              18 
     TCGA-FB-A4P5      TCGA-FB-A4P6      TCGA-FB-A5VM      TCGA-FB-A78T 
"IKZF5 WILD-TYPE" "IKZF5 WILD-TYPE" "IKZF5 WILD-TYPE" "IKZF5 WILD-TYPE" 
     TCGA-FB-A7DR      TCGA-H6-8124      TCGA-H8-A6C1      TCGA-IB-7644 
"IKZF5 WILD-TYPE" "IKZF5 WILD-TYPE" "IKZF5 WILD-TYPE" "IKZF5 WILD-TYPE" 
     TCGA-IB-7649      TCGA-IB-7651      TCGA-IB-7885      TCGA-IB-7886 
"IKZF5 WILD-TYPE" "IKZF5 WILD-TYPE" "IKZF5 WILD-TYPE" "IKZF5 WILD-TYPE" 
     TCGA-IB-7891      TCGA-IB-8126      TCGA-IB-A5SS      TCGA-IB-A6UG 
"IKZF5 WILD-TYPE" "IKZF5 WILD-TYPE" "IKZF5 WILD-TYPE" "IKZF5 WILD-TYPE" 
     TCGA-LB-A7SX      TCGA-OE-A75W 
"IKZF5 WILD-TYPE" "IKZF5 WILD-TYPE" 
                 vv
clus              R0 R1 RX
  IKZF5 MUTATED    0  2  1
  IKZF5 WILD-TYPE 42 22  1
D311V11, multiclass
    clus
vv   IKZF5 MUTATED IKZF5 WILD-TYPE
  R0             0              42
  R1             2              22
  RX             1               1
D311V12, continuous

Clustering(312) Variable = ACIN1 MUTATION ANALYSIS
D312V1, survival
                 sevent
clus2              0  1
  ACIN1 MUTATED    2  2
  ACIN1 WILD-TYPE 38 27
  ACIN1 MUTATED ACIN1 WILD-TYPE 
              4              65 
  ACIN1 MUTATED ACIN1 WILD-TYPE 
              2              27 
$`ACIN1 MUTATED`
TCGA-HZ-8002 TCGA-HZ-8005 TCGA-HZ-A49H TCGA-IB-7651 
        0.79         3.95         0.95        19.82 

$`ACIN1 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P5 TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR 
        0.13        11.93        12.66         2.47         0.03         5.46 
TCGA-FZ-5920 TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 
        2.01        36.20        20.81        12.89         7.66        13.02 
TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 
        7.89         0.92         0.66         0.13         0.26        12.13 
TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8003 TCGA-HZ-8315 TCGA-HZ-8317 
       11.87         0.26         0.62         0.69         0.92         0.53 
TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 
        0.16         2.99         0.76         6.38         1.51        11.41 
TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7652 TCGA-IB-7885 
       49.38         4.77        21.90        15.35        15.65        27.98 
TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 
        4.04         3.62        43.79        15.81        19.66        16.04 
TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP 
        3.85        15.98         0.56        17.16        10.82         9.86 
TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W 
        7.20        15.12         0.26         1.35         4.18         3.62 
TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
        8.12        13.68        16.80        14.14        18.67 

  ACIN1 MUTATED ACIN1 WILD-TYPE 
           0.79            0.03 
  ACIN1 MUTATED ACIN1 WILD-TYPE 
          19.82           49.38 
  ACIN1 MUTATED ACIN1 WILD-TYPE 
           2.45            7.89 
[1] "0.8 - 19.8 (2.5)" "0.0 - 49.4 (7.9)"
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"ACIN1 WILD-TYPE" "ACIN1 WILD-TYPE" "ACIN1 WILD-TYPE" "ACIN1 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"ACIN1 WILD-TYPE" "ACIN1 WILD-TYPE" "ACIN1 WILD-TYPE" "ACIN1 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"ACIN1 WILD-TYPE" "ACIN1 WILD-TYPE" "ACIN1 WILD-TYPE" "ACIN1 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"ACIN1 WILD-TYPE" "ACIN1 WILD-TYPE" "ACIN1 WILD-TYPE" "ACIN1 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"ACIN1 WILD-TYPE" "ACIN1 WILD-TYPE" "ACIN1 WILD-TYPE" "ACIN1 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"ACIN1 WILD-TYPE" "ACIN1 WILD-TYPE" "ACIN1 WILD-TYPE" "ACIN1 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"ACIN1 WILD-TYPE" "ACIN1 WILD-TYPE" "ACIN1 WILD-TYPE"   "ACIN1 MUTATED" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"ACIN1 WILD-TYPE"   "ACIN1 MUTATED" "ACIN1 WILD-TYPE" "ACIN1 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"ACIN1 WILD-TYPE" "ACIN1 WILD-TYPE" "ACIN1 WILD-TYPE"   "ACIN1 MUTATED" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"ACIN1 WILD-TYPE" "ACIN1 WILD-TYPE" "ACIN1 WILD-TYPE" "ACIN1 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"ACIN1 WILD-TYPE" "ACIN1 WILD-TYPE" "ACIN1 WILD-TYPE"   "ACIN1 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"ACIN1 WILD-TYPE" "ACIN1 WILD-TYPE" "ACIN1 WILD-TYPE" "ACIN1 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"ACIN1 WILD-TYPE" "ACIN1 WILD-TYPE" "ACIN1 WILD-TYPE" "ACIN1 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"ACIN1 WILD-TYPE" "ACIN1 WILD-TYPE" "ACIN1 WILD-TYPE" "ACIN1 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"ACIN1 WILD-TYPE" "ACIN1 WILD-TYPE" "ACIN1 WILD-TYPE" "ACIN1 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"ACIN1 WILD-TYPE" "ACIN1 WILD-TYPE" "ACIN1 WILD-TYPE" "ACIN1 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"ACIN1 WILD-TYPE" "ACIN1 WILD-TYPE" "ACIN1 WILD-TYPE" "ACIN1 WILD-TYPE" 
     TCGA-US-A77J 
"ACIN1 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"ACIN1 WILD-TYPE" "ACIN1 WILD-TYPE" "ACIN1 WILD-TYPE" "ACIN1 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"ACIN1 WILD-TYPE" "ACIN1 WILD-TYPE" "ACIN1 WILD-TYPE" "ACIN1 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"ACIN1 WILD-TYPE" "ACIN1 WILD-TYPE" "ACIN1 WILD-TYPE" "ACIN1 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"ACIN1 WILD-TYPE" "ACIN1 WILD-TYPE" "ACIN1 WILD-TYPE" "ACIN1 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"ACIN1 WILD-TYPE" "ACIN1 WILD-TYPE" "ACIN1 WILD-TYPE" "ACIN1 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"ACIN1 WILD-TYPE" "ACIN1 WILD-TYPE" "ACIN1 WILD-TYPE" "ACIN1 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"ACIN1 WILD-TYPE" "ACIN1 WILD-TYPE" "ACIN1 WILD-TYPE"   "ACIN1 MUTATED" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"ACIN1 WILD-TYPE"   "ACIN1 MUTATED" "ACIN1 WILD-TYPE" "ACIN1 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"ACIN1 WILD-TYPE" "ACIN1 WILD-TYPE" "ACIN1 WILD-TYPE"   "ACIN1 MUTATED" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"ACIN1 WILD-TYPE" "ACIN1 WILD-TYPE" "ACIN1 WILD-TYPE" "ACIN1 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"ACIN1 WILD-TYPE" "ACIN1 WILD-TYPE" "ACIN1 WILD-TYPE"   "ACIN1 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"ACIN1 WILD-TYPE" "ACIN1 WILD-TYPE" "ACIN1 WILD-TYPE" "ACIN1 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"ACIN1 WILD-TYPE" "ACIN1 WILD-TYPE" "ACIN1 WILD-TYPE" "ACIN1 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"ACIN1 WILD-TYPE" "ACIN1 WILD-TYPE" "ACIN1 WILD-TYPE" "ACIN1 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"ACIN1 WILD-TYPE" "ACIN1 WILD-TYPE" "ACIN1 WILD-TYPE" "ACIN1 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"ACIN1 WILD-TYPE" "ACIN1 WILD-TYPE" "ACIN1 WILD-TYPE" "ACIN1 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"ACIN1 WILD-TYPE" "ACIN1 WILD-TYPE" "ACIN1 WILD-TYPE" "ACIN1 WILD-TYPE" 
     TCGA-US-A77J 
"ACIN1 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"ACIN1 WILD-TYPE" "ACIN1 WILD-TYPE" "ACIN1 WILD-TYPE" "ACIN1 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"ACIN1 WILD-TYPE" "ACIN1 WILD-TYPE" "ACIN1 WILD-TYPE" "ACIN1 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"ACIN1 WILD-TYPE" "ACIN1 WILD-TYPE" "ACIN1 WILD-TYPE" "ACIN1 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"ACIN1 WILD-TYPE" "ACIN1 WILD-TYPE" "ACIN1 WILD-TYPE" "ACIN1 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"ACIN1 WILD-TYPE" "ACIN1 WILD-TYPE" "ACIN1 WILD-TYPE" "ACIN1 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"ACIN1 WILD-TYPE" "ACIN1 WILD-TYPE" "ACIN1 WILD-TYPE" "ACIN1 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"ACIN1 WILD-TYPE" "ACIN1 WILD-TYPE" "ACIN1 WILD-TYPE"   "ACIN1 MUTATED" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"ACIN1 WILD-TYPE"   "ACIN1 MUTATED" "ACIN1 WILD-TYPE" "ACIN1 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"ACIN1 WILD-TYPE" "ACIN1 WILD-TYPE" "ACIN1 WILD-TYPE"   "ACIN1 MUTATED" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"ACIN1 WILD-TYPE" "ACIN1 WILD-TYPE" "ACIN1 WILD-TYPE" "ACIN1 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"ACIN1 WILD-TYPE" "ACIN1 WILD-TYPE" "ACIN1 WILD-TYPE"   "ACIN1 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"ACIN1 WILD-TYPE" "ACIN1 WILD-TYPE" "ACIN1 WILD-TYPE" "ACIN1 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"ACIN1 WILD-TYPE" "ACIN1 WILD-TYPE" "ACIN1 WILD-TYPE" "ACIN1 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"ACIN1 WILD-TYPE" "ACIN1 WILD-TYPE" "ACIN1 WILD-TYPE" "ACIN1 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"ACIN1 WILD-TYPE" "ACIN1 WILD-TYPE" "ACIN1 WILD-TYPE" "ACIN1 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"ACIN1 WILD-TYPE" "ACIN1 WILD-TYPE" "ACIN1 WILD-TYPE" "ACIN1 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"ACIN1 WILD-TYPE" "ACIN1 WILD-TYPE" "ACIN1 WILD-TYPE" "ACIN1 WILD-TYPE" 
     TCGA-US-A77J 
"ACIN1 WILD-TYPE" 
[1] "hr=" "1.6"
D312V2, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  ACIN1 MUTATED          0        0         0         4         0        0
  ACIN1 WILD-TYPE        1        4        11        47         2        3
D312V3, multiclass
                 vv
clus              T1+T2 T3+T4
  ACIN1 MUTATED       0     4
  ACIN1 WILD-TYPE     6    62
D312V4, multiclass
       clus
vv      ACIN1 MUTATED ACIN1 WILD-TYPE
  T1+T2             0               6
  T3+T4             4              62
D312V5, binary
                 cls
clus               0  1
  ACIN1 MUTATED    0  4
  ACIN1 WILD-TYPE 17 50
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ACIN1 MUTATED      0    4
  ACIN1 WILD-TYPE   17   50
   clus
vv  ACIN1 MUTATED ACIN1 WILD-TYPE
  0             0              17
  1             4              50
                 vv
clus              M0 M1 MX
  ACIN1 MUTATED    1  0  3
  ACIN1 WILD-TYPE 38  3 27
D312V6, multiclass
    clus
vv   ACIN1 MUTATED ACIN1 WILD-TYPE
  M0             1              38
  M1             0               3
  MX             3              27
D312V7, binary
                 cls
clus               0  1
  ACIN1 MUTATED    2  2
  ACIN1 WILD-TYPE 34 34
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ACIN1 MUTATED      2    2
  ACIN1 WILD-TYPE   34   34
        clus
vv       ACIN1 MUTATED ACIN1 WILD-TYPE
  FEMALE             2              34
  MALE               2              34
                 vv
clus              PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  ACIN1 MUTATED                                     4
  ACIN1 WILD-TYPE                                  61
                 vv
clus              PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  ACIN1 MUTATED                                       0
  ACIN1 WILD-TYPE                                     4
                 vv
clus              PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  ACIN1 MUTATED                                                  0
  ACIN1 WILD-TYPE                                                2
D312V8, multiclass
                                                  clus
vv                                                 ACIN1 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                          4
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                        0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA             0
                                                  clus
vv                                                 ACIN1 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                           61
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                          4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA               2
D312V9, continuous
[1] "Remove cluster labels:" "ACIN1 MUTATED"         
clus
  ACIN1 MUTATED ACIN1 WILD-TYPE 
              1              21 
     TCGA-F2-6880      TCGA-FB-A4P5      TCGA-FB-A4P6      TCGA-FB-A5VM 
"ACIN1 WILD-TYPE" "ACIN1 WILD-TYPE" "ACIN1 WILD-TYPE" "ACIN1 WILD-TYPE" 
     TCGA-FB-A78T      TCGA-FB-A7DR      TCGA-H6-8124      TCGA-H6-A45N 
"ACIN1 WILD-TYPE" "ACIN1 WILD-TYPE" "ACIN1 WILD-TYPE" "ACIN1 WILD-TYPE" 
     TCGA-H8-A6C1      TCGA-IB-7644      TCGA-IB-7649      TCGA-IB-7885 
"ACIN1 WILD-TYPE" "ACIN1 WILD-TYPE" "ACIN1 WILD-TYPE" "ACIN1 WILD-TYPE" 
     TCGA-IB-7886      TCGA-IB-7887      TCGA-IB-7891      TCGA-IB-8126 
"ACIN1 WILD-TYPE" "ACIN1 WILD-TYPE" "ACIN1 WILD-TYPE" "ACIN1 WILD-TYPE" 
     TCGA-IB-8127      TCGA-IB-A5SS      TCGA-IB-A6UG      TCGA-LB-A7SX 
"ACIN1 WILD-TYPE" "ACIN1 WILD-TYPE" "ACIN1 WILD-TYPE" "ACIN1 WILD-TYPE" 
     TCGA-OE-A75W 
"ACIN1 WILD-TYPE" 
D312V10, continuous
[1] "Remove cluster labels:" "ACIN1 MUTATED"         
clus
  ACIN1 MUTATED ACIN1 WILD-TYPE 
              1              18 
     TCGA-FB-A4P5      TCGA-FB-A4P6      TCGA-FB-A5VM      TCGA-FB-A78T 
"ACIN1 WILD-TYPE" "ACIN1 WILD-TYPE" "ACIN1 WILD-TYPE" "ACIN1 WILD-TYPE" 
     TCGA-FB-A7DR      TCGA-H6-8124      TCGA-H8-A6C1      TCGA-IB-7644 
"ACIN1 WILD-TYPE" "ACIN1 WILD-TYPE" "ACIN1 WILD-TYPE" "ACIN1 WILD-TYPE" 
     TCGA-IB-7649      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7891 
"ACIN1 WILD-TYPE" "ACIN1 WILD-TYPE" "ACIN1 WILD-TYPE" "ACIN1 WILD-TYPE" 
     TCGA-IB-8126      TCGA-IB-8127      TCGA-IB-A5SS      TCGA-IB-A6UG 
"ACIN1 WILD-TYPE" "ACIN1 WILD-TYPE" "ACIN1 WILD-TYPE" "ACIN1 WILD-TYPE" 
     TCGA-LB-A7SX      TCGA-OE-A75W 
"ACIN1 WILD-TYPE" "ACIN1 WILD-TYPE" 
                 vv
clus              R0 R1 RX
  ACIN1 MUTATED    3  1  0
  ACIN1 WILD-TYPE 39 23  2
D312V11, multiclass
    clus
vv   ACIN1 MUTATED ACIN1 WILD-TYPE
  R0             3              39
  R1             1              23
  RX             0               2
D312V12, continuous

Clustering(313) Variable = LRCH1 MUTATION ANALYSIS
D313V1, survival
                 sevent
clus2              0  1
  LRCH1 MUTATED    3  5
  LRCH1 WILD-TYPE 37 24
  LRCH1 MUTATED LRCH1 WILD-TYPE 
              8              61 
  LRCH1 MUTATED LRCH1 WILD-TYPE 
              5              24 
$`LRCH1 MUTATED`
TCGA-HZ-8001 TCGA-HZ-8002 TCGA-IB-7651 TCGA-IB-7888 TCGA-IB-7890 TCGA-IB-7893 
        0.62         0.79        19.82        43.79        19.66         3.85 
TCGA-IB-7897 TCGA-LB-A7SX 
       15.98         4.18 

$`LRCH1 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P5 TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR 
        0.13        11.93        12.66         2.47         0.03         5.46 
TCGA-FZ-5920 TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 
        2.01        36.20        20.81        12.89         7.66        13.02 
TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 
        7.89         0.92         0.66         0.13         0.26        12.13 
TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 
       11.87         0.26         0.69         3.95         0.92         0.53 
TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK 
        0.16         2.99         0.76         0.95         6.38         1.51 
TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7652 
       11.41        49.38         4.77        21.90        15.35        15.65 
TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7889 TCGA-IB-7891 TCGA-IB-8126 
       27.98         4.04         3.62        15.81        16.04         0.56 
TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST 
       17.16        10.82         9.86         7.20        15.12         0.26 
TCGA-IB-A6UG TCGA-OE-A75W TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E 
        1.35         3.62         8.12        13.68        16.80        14.14 
TCGA-US-A77J 
       18.67 

  LRCH1 MUTATED LRCH1 WILD-TYPE 
           0.62            0.03 
  LRCH1 MUTATED LRCH1 WILD-TYPE 
          43.79           49.38 
  LRCH1 MUTATED LRCH1 WILD-TYPE 
          10.08            7.66 
[1] "0.6 - 43.8 (10.1)" "0.0 - 49.4 (7.7)" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"LRCH1 WILD-TYPE" "LRCH1 WILD-TYPE" "LRCH1 WILD-TYPE" "LRCH1 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"LRCH1 WILD-TYPE" "LRCH1 WILD-TYPE" "LRCH1 WILD-TYPE" "LRCH1 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"LRCH1 WILD-TYPE" "LRCH1 WILD-TYPE" "LRCH1 WILD-TYPE" "LRCH1 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"LRCH1 WILD-TYPE" "LRCH1 WILD-TYPE" "LRCH1 WILD-TYPE" "LRCH1 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"LRCH1 WILD-TYPE" "LRCH1 WILD-TYPE" "LRCH1 WILD-TYPE" "LRCH1 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"LRCH1 WILD-TYPE" "LRCH1 WILD-TYPE" "LRCH1 WILD-TYPE" "LRCH1 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"LRCH1 WILD-TYPE" "LRCH1 WILD-TYPE"   "LRCH1 MUTATED"   "LRCH1 MUTATED" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"LRCH1 WILD-TYPE" "LRCH1 WILD-TYPE" "LRCH1 WILD-TYPE" "LRCH1 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"LRCH1 WILD-TYPE" "LRCH1 WILD-TYPE" "LRCH1 WILD-TYPE" "LRCH1 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"LRCH1 WILD-TYPE" "LRCH1 WILD-TYPE" "LRCH1 WILD-TYPE" "LRCH1 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"LRCH1 WILD-TYPE" "LRCH1 WILD-TYPE" "LRCH1 WILD-TYPE"   "LRCH1 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"LRCH1 WILD-TYPE" "LRCH1 WILD-TYPE" "LRCH1 WILD-TYPE" "LRCH1 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
  "LRCH1 MUTATED" "LRCH1 WILD-TYPE"   "LRCH1 MUTATED" "LRCH1 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
  "LRCH1 MUTATED"   "LRCH1 MUTATED" "LRCH1 WILD-TYPE" "LRCH1 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"LRCH1 WILD-TYPE" "LRCH1 WILD-TYPE" "LRCH1 WILD-TYPE" "LRCH1 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"LRCH1 WILD-TYPE" "LRCH1 WILD-TYPE"   "LRCH1 MUTATED" "LRCH1 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"LRCH1 WILD-TYPE" "LRCH1 WILD-TYPE" "LRCH1 WILD-TYPE" "LRCH1 WILD-TYPE" 
     TCGA-US-A77J 
"LRCH1 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"LRCH1 WILD-TYPE" "LRCH1 WILD-TYPE" "LRCH1 WILD-TYPE" "LRCH1 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"LRCH1 WILD-TYPE" "LRCH1 WILD-TYPE" "LRCH1 WILD-TYPE" "LRCH1 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"LRCH1 WILD-TYPE" "LRCH1 WILD-TYPE" "LRCH1 WILD-TYPE" "LRCH1 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"LRCH1 WILD-TYPE" "LRCH1 WILD-TYPE" "LRCH1 WILD-TYPE" "LRCH1 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"LRCH1 WILD-TYPE" "LRCH1 WILD-TYPE" "LRCH1 WILD-TYPE" "LRCH1 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"LRCH1 WILD-TYPE" "LRCH1 WILD-TYPE" "LRCH1 WILD-TYPE" "LRCH1 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"LRCH1 WILD-TYPE" "LRCH1 WILD-TYPE"   "LRCH1 MUTATED"   "LRCH1 MUTATED" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"LRCH1 WILD-TYPE" "LRCH1 WILD-TYPE" "LRCH1 WILD-TYPE" "LRCH1 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"LRCH1 WILD-TYPE" "LRCH1 WILD-TYPE" "LRCH1 WILD-TYPE" "LRCH1 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"LRCH1 WILD-TYPE" "LRCH1 WILD-TYPE" "LRCH1 WILD-TYPE" "LRCH1 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"LRCH1 WILD-TYPE" "LRCH1 WILD-TYPE" "LRCH1 WILD-TYPE"   "LRCH1 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"LRCH1 WILD-TYPE" "LRCH1 WILD-TYPE" "LRCH1 WILD-TYPE" "LRCH1 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
  "LRCH1 MUTATED" "LRCH1 WILD-TYPE"   "LRCH1 MUTATED" "LRCH1 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
  "LRCH1 MUTATED"   "LRCH1 MUTATED" "LRCH1 WILD-TYPE" "LRCH1 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"LRCH1 WILD-TYPE" "LRCH1 WILD-TYPE" "LRCH1 WILD-TYPE" "LRCH1 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"LRCH1 WILD-TYPE" "LRCH1 WILD-TYPE"   "LRCH1 MUTATED" "LRCH1 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"LRCH1 WILD-TYPE" "LRCH1 WILD-TYPE" "LRCH1 WILD-TYPE" "LRCH1 WILD-TYPE" 
     TCGA-US-A77J 
"LRCH1 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"LRCH1 WILD-TYPE" "LRCH1 WILD-TYPE" "LRCH1 WILD-TYPE" "LRCH1 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"LRCH1 WILD-TYPE" "LRCH1 WILD-TYPE" "LRCH1 WILD-TYPE" "LRCH1 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"LRCH1 WILD-TYPE" "LRCH1 WILD-TYPE" "LRCH1 WILD-TYPE" "LRCH1 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"LRCH1 WILD-TYPE" "LRCH1 WILD-TYPE" "LRCH1 WILD-TYPE" "LRCH1 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"LRCH1 WILD-TYPE" "LRCH1 WILD-TYPE" "LRCH1 WILD-TYPE" "LRCH1 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"LRCH1 WILD-TYPE" "LRCH1 WILD-TYPE" "LRCH1 WILD-TYPE" "LRCH1 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"LRCH1 WILD-TYPE" "LRCH1 WILD-TYPE"   "LRCH1 MUTATED"   "LRCH1 MUTATED" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"LRCH1 WILD-TYPE" "LRCH1 WILD-TYPE" "LRCH1 WILD-TYPE" "LRCH1 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"LRCH1 WILD-TYPE" "LRCH1 WILD-TYPE" "LRCH1 WILD-TYPE" "LRCH1 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"LRCH1 WILD-TYPE" "LRCH1 WILD-TYPE" "LRCH1 WILD-TYPE" "LRCH1 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"LRCH1 WILD-TYPE" "LRCH1 WILD-TYPE" "LRCH1 WILD-TYPE"   "LRCH1 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"LRCH1 WILD-TYPE" "LRCH1 WILD-TYPE" "LRCH1 WILD-TYPE" "LRCH1 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
  "LRCH1 MUTATED" "LRCH1 WILD-TYPE"   "LRCH1 MUTATED" "LRCH1 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
  "LRCH1 MUTATED"   "LRCH1 MUTATED" "LRCH1 WILD-TYPE" "LRCH1 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"LRCH1 WILD-TYPE" "LRCH1 WILD-TYPE" "LRCH1 WILD-TYPE" "LRCH1 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"LRCH1 WILD-TYPE" "LRCH1 WILD-TYPE"   "LRCH1 MUTATED" "LRCH1 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"LRCH1 WILD-TYPE" "LRCH1 WILD-TYPE" "LRCH1 WILD-TYPE" "LRCH1 WILD-TYPE" 
     TCGA-US-A77J 
"LRCH1 WILD-TYPE" 
[1] "hr=" "1.1"
D313V2, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  LRCH1 MUTATED          0        2         2         4         1        0
  LRCH1 WILD-TYPE        1        2         9        47         1        3
D313V3, multiclass
                 vv
clus              T1+T2 T3+T4
  LRCH1 MUTATED       2     7
  LRCH1 WILD-TYPE     4    59
D313V4, multiclass
       clus
vv      LRCH1 MUTATED LRCH1 WILD-TYPE
  T1+T2             2               4
  T3+T4             7              59
D313V5, binary
                 cls
clus               0  1
  LRCH1 MUTATED    5  4
  LRCH1 WILD-TYPE 12 50
[1] "tbl2"
                 cls
clus              [,1] [,2]
  LRCH1 MUTATED      5    4
  LRCH1 WILD-TYPE   12   50
   clus
vv  LRCH1 MUTATED LRCH1 WILD-TYPE
  0             5              12
  1             4              50
                 vv
clus              M0 M1 MX
  LRCH1 MUTATED    5  0  4
  LRCH1 WILD-TYPE 34  3 26
D313V6, multiclass
    clus
vv   LRCH1 MUTATED LRCH1 WILD-TYPE
  M0             5              34
  M1             0               3
  MX             4              26
D313V7, binary
                 cls
clus               0  1
  LRCH1 MUTATED    4  5
  LRCH1 WILD-TYPE 32 31
[1] "tbl2"
                 cls
clus              [,1] [,2]
  LRCH1 MUTATED      4    5
  LRCH1 WILD-TYPE   32   31
        clus
vv       LRCH1 MUTATED LRCH1 WILD-TYPE
  FEMALE             4              32
  MALE               5              31
                 vv
clus              PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  LRCH1 MUTATED                                     9
  LRCH1 WILD-TYPE                                  56
                 vv
clus              PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  LRCH1 MUTATED                                       0
  LRCH1 WILD-TYPE                                     4
                 vv
clus              PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  LRCH1 MUTATED                                                  0
  LRCH1 WILD-TYPE                                                2
D313V8, multiclass
                                                  clus
vv                                                 LRCH1 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                          9
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                        0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA             0
                                                  clus
vv                                                 LRCH1 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                           56
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                          4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA               2
D313V9, continuous
[1] "Remove cluster labels:" "LRCH1 MUTATED"         
clus
  LRCH1 MUTATED LRCH1 WILD-TYPE 
              2              20 
     TCGA-F2-6880      TCGA-FB-A4P5      TCGA-FB-A4P6      TCGA-FB-A5VM 
"LRCH1 WILD-TYPE" "LRCH1 WILD-TYPE" "LRCH1 WILD-TYPE" "LRCH1 WILD-TYPE" 
     TCGA-FB-A78T      TCGA-FB-A7DR      TCGA-H6-8124      TCGA-H6-A45N 
"LRCH1 WILD-TYPE" "LRCH1 WILD-TYPE" "LRCH1 WILD-TYPE" "LRCH1 WILD-TYPE" 
     TCGA-H8-A6C1      TCGA-IB-7644      TCGA-IB-7649      TCGA-IB-7885 
"LRCH1 WILD-TYPE" "LRCH1 WILD-TYPE" "LRCH1 WILD-TYPE" "LRCH1 WILD-TYPE" 
     TCGA-IB-7886      TCGA-IB-7887      TCGA-IB-7891      TCGA-IB-8126 
"LRCH1 WILD-TYPE" "LRCH1 WILD-TYPE" "LRCH1 WILD-TYPE" "LRCH1 WILD-TYPE" 
     TCGA-IB-8127      TCGA-IB-A5SS      TCGA-IB-A6UG      TCGA-OE-A75W 
"LRCH1 WILD-TYPE" "LRCH1 WILD-TYPE" "LRCH1 WILD-TYPE" "LRCH1 WILD-TYPE" 
D313V10, continuous
[1] "Remove cluster labels:" "LRCH1 MUTATED"         
clus
  LRCH1 MUTATED LRCH1 WILD-TYPE 
              2              17 
     TCGA-FB-A4P5      TCGA-FB-A4P6      TCGA-FB-A5VM      TCGA-FB-A78T 
"LRCH1 WILD-TYPE" "LRCH1 WILD-TYPE" "LRCH1 WILD-TYPE" "LRCH1 WILD-TYPE" 
     TCGA-FB-A7DR      TCGA-H6-8124      TCGA-H8-A6C1      TCGA-IB-7644 
"LRCH1 WILD-TYPE" "LRCH1 WILD-TYPE" "LRCH1 WILD-TYPE" "LRCH1 WILD-TYPE" 
     TCGA-IB-7649      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7891 
"LRCH1 WILD-TYPE" "LRCH1 WILD-TYPE" "LRCH1 WILD-TYPE" "LRCH1 WILD-TYPE" 
     TCGA-IB-8126      TCGA-IB-8127      TCGA-IB-A5SS      TCGA-IB-A6UG 
"LRCH1 WILD-TYPE" "LRCH1 WILD-TYPE" "LRCH1 WILD-TYPE" "LRCH1 WILD-TYPE" 
     TCGA-OE-A75W 
"LRCH1 WILD-TYPE" 
                 vv
clus              R0 R1 RX
  LRCH1 MUTATED    8  1  0
  LRCH1 WILD-TYPE 34 23  2
D313V11, multiclass
    clus
vv   LRCH1 MUTATED LRCH1 WILD-TYPE
  R0             8              34
  R1             1              23
  RX             0               2
D313V12, continuous

Clustering(314) Variable = CNGB1 MUTATION ANALYSIS
D314V1, survival
                 sevent
clus2              0  1
  CNGB1 MUTATED    2  3
  CNGB1 WILD-TYPE 38 26
  CNGB1 MUTATED CNGB1 WILD-TYPE 
              5              64 
  CNGB1 MUTATED CNGB1 WILD-TYPE 
              3              26 
$`CNGB1 MUTATED`
TCGA-HZ-8001 TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7651 TCGA-IB-7893 
        0.62         1.51        11.41        19.82         3.85 

$`CNGB1 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P5 TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR 
        0.13        11.93        12.66         2.47         0.03         5.46 
TCGA-FZ-5920 TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 
        2.01        36.20        20.81        12.89         7.66        13.02 
TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 
        7.89         0.92         0.66         0.13         0.26        12.13 
TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 
       11.87         0.26         0.79         0.69         3.95         0.92 
TCGA-HZ-8317 TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH 
        0.53         0.16         2.99         0.76         0.95         6.38 
TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7652 TCGA-IB-7885 
       49.38         4.77        21.90        15.35        15.65        27.98 
TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 
        4.04         3.62        43.79        15.81        19.66        16.04 
TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ 
       15.98         0.56        17.16        10.82         9.86         7.20 
TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W TCGA-PZ-A5RE 
       15.12         0.26         1.35         4.18         3.62         8.12 
TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
       13.68        16.80        14.14        18.67 

  CNGB1 MUTATED CNGB1 WILD-TYPE 
           0.62            0.03 
  CNGB1 MUTATED CNGB1 WILD-TYPE 
          19.82           49.38 
  CNGB1 MUTATED CNGB1 WILD-TYPE 
          3.850           7.775 
[1] "0.6 - 19.8 (3.9)" "0.0 - 49.4 (7.8)"
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"CNGB1 WILD-TYPE" "CNGB1 WILD-TYPE" "CNGB1 WILD-TYPE" "CNGB1 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"CNGB1 WILD-TYPE" "CNGB1 WILD-TYPE" "CNGB1 WILD-TYPE" "CNGB1 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"CNGB1 WILD-TYPE" "CNGB1 WILD-TYPE" "CNGB1 WILD-TYPE" "CNGB1 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"CNGB1 WILD-TYPE" "CNGB1 WILD-TYPE" "CNGB1 WILD-TYPE" "CNGB1 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"CNGB1 WILD-TYPE" "CNGB1 WILD-TYPE" "CNGB1 WILD-TYPE" "CNGB1 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"CNGB1 WILD-TYPE" "CNGB1 WILD-TYPE" "CNGB1 WILD-TYPE" "CNGB1 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"CNGB1 WILD-TYPE" "CNGB1 WILD-TYPE"   "CNGB1 MUTATED" "CNGB1 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"CNGB1 WILD-TYPE" "CNGB1 WILD-TYPE" "CNGB1 WILD-TYPE" "CNGB1 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"CNGB1 WILD-TYPE" "CNGB1 WILD-TYPE" "CNGB1 WILD-TYPE" "CNGB1 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"CNGB1 WILD-TYPE"   "CNGB1 MUTATED"   "CNGB1 MUTATED" "CNGB1 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"CNGB1 WILD-TYPE" "CNGB1 WILD-TYPE" "CNGB1 WILD-TYPE"   "CNGB1 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"CNGB1 WILD-TYPE" "CNGB1 WILD-TYPE" "CNGB1 WILD-TYPE" "CNGB1 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"CNGB1 WILD-TYPE" "CNGB1 WILD-TYPE" "CNGB1 WILD-TYPE" "CNGB1 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
  "CNGB1 MUTATED" "CNGB1 WILD-TYPE" "CNGB1 WILD-TYPE" "CNGB1 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"CNGB1 WILD-TYPE" "CNGB1 WILD-TYPE" "CNGB1 WILD-TYPE" "CNGB1 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"CNGB1 WILD-TYPE" "CNGB1 WILD-TYPE" "CNGB1 WILD-TYPE" "CNGB1 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"CNGB1 WILD-TYPE" "CNGB1 WILD-TYPE" "CNGB1 WILD-TYPE" "CNGB1 WILD-TYPE" 
     TCGA-US-A77J 
"CNGB1 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"CNGB1 WILD-TYPE" "CNGB1 WILD-TYPE" "CNGB1 WILD-TYPE" "CNGB1 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"CNGB1 WILD-TYPE" "CNGB1 WILD-TYPE" "CNGB1 WILD-TYPE" "CNGB1 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"CNGB1 WILD-TYPE" "CNGB1 WILD-TYPE" "CNGB1 WILD-TYPE" "CNGB1 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"CNGB1 WILD-TYPE" "CNGB1 WILD-TYPE" "CNGB1 WILD-TYPE" "CNGB1 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"CNGB1 WILD-TYPE" "CNGB1 WILD-TYPE" "CNGB1 WILD-TYPE" "CNGB1 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"CNGB1 WILD-TYPE" "CNGB1 WILD-TYPE" "CNGB1 WILD-TYPE" "CNGB1 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"CNGB1 WILD-TYPE" "CNGB1 WILD-TYPE"   "CNGB1 MUTATED" "CNGB1 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"CNGB1 WILD-TYPE" "CNGB1 WILD-TYPE" "CNGB1 WILD-TYPE" "CNGB1 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"CNGB1 WILD-TYPE" "CNGB1 WILD-TYPE" "CNGB1 WILD-TYPE" "CNGB1 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"CNGB1 WILD-TYPE"   "CNGB1 MUTATED"   "CNGB1 MUTATED" "CNGB1 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"CNGB1 WILD-TYPE" "CNGB1 WILD-TYPE" "CNGB1 WILD-TYPE"   "CNGB1 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"CNGB1 WILD-TYPE" "CNGB1 WILD-TYPE" "CNGB1 WILD-TYPE" "CNGB1 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"CNGB1 WILD-TYPE" "CNGB1 WILD-TYPE" "CNGB1 WILD-TYPE" "CNGB1 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
  "CNGB1 MUTATED" "CNGB1 WILD-TYPE" "CNGB1 WILD-TYPE" "CNGB1 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"CNGB1 WILD-TYPE" "CNGB1 WILD-TYPE" "CNGB1 WILD-TYPE" "CNGB1 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"CNGB1 WILD-TYPE" "CNGB1 WILD-TYPE" "CNGB1 WILD-TYPE" "CNGB1 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"CNGB1 WILD-TYPE" "CNGB1 WILD-TYPE" "CNGB1 WILD-TYPE" "CNGB1 WILD-TYPE" 
     TCGA-US-A77J 
"CNGB1 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"CNGB1 WILD-TYPE" "CNGB1 WILD-TYPE" "CNGB1 WILD-TYPE" "CNGB1 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"CNGB1 WILD-TYPE" "CNGB1 WILD-TYPE" "CNGB1 WILD-TYPE" "CNGB1 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"CNGB1 WILD-TYPE" "CNGB1 WILD-TYPE" "CNGB1 WILD-TYPE" "CNGB1 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"CNGB1 WILD-TYPE" "CNGB1 WILD-TYPE" "CNGB1 WILD-TYPE" "CNGB1 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"CNGB1 WILD-TYPE" "CNGB1 WILD-TYPE" "CNGB1 WILD-TYPE" "CNGB1 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"CNGB1 WILD-TYPE" "CNGB1 WILD-TYPE" "CNGB1 WILD-TYPE" "CNGB1 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"CNGB1 WILD-TYPE" "CNGB1 WILD-TYPE"   "CNGB1 MUTATED" "CNGB1 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"CNGB1 WILD-TYPE" "CNGB1 WILD-TYPE" "CNGB1 WILD-TYPE" "CNGB1 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"CNGB1 WILD-TYPE" "CNGB1 WILD-TYPE" "CNGB1 WILD-TYPE" "CNGB1 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"CNGB1 WILD-TYPE"   "CNGB1 MUTATED"   "CNGB1 MUTATED" "CNGB1 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"CNGB1 WILD-TYPE" "CNGB1 WILD-TYPE" "CNGB1 WILD-TYPE"   "CNGB1 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"CNGB1 WILD-TYPE" "CNGB1 WILD-TYPE" "CNGB1 WILD-TYPE" "CNGB1 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"CNGB1 WILD-TYPE" "CNGB1 WILD-TYPE" "CNGB1 WILD-TYPE" "CNGB1 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
  "CNGB1 MUTATED" "CNGB1 WILD-TYPE" "CNGB1 WILD-TYPE" "CNGB1 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"CNGB1 WILD-TYPE" "CNGB1 WILD-TYPE" "CNGB1 WILD-TYPE" "CNGB1 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"CNGB1 WILD-TYPE" "CNGB1 WILD-TYPE" "CNGB1 WILD-TYPE" "CNGB1 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"CNGB1 WILD-TYPE" "CNGB1 WILD-TYPE" "CNGB1 WILD-TYPE" "CNGB1 WILD-TYPE" 
     TCGA-US-A77J 
"CNGB1 WILD-TYPE" 
[1] "hr=" "2"  
D314V2, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  CNGB1 MUTATED          0        0         1         3         1        1
  CNGB1 WILD-TYPE        1        4        10        48         1        2
D314V3, multiclass
                 vv
clus              T1+T2 T3+T4
  CNGB1 MUTATED       0     6
  CNGB1 WILD-TYPE     6    60
D314V4, multiclass
       clus
vv      CNGB1 MUTATED CNGB1 WILD-TYPE
  T1+T2             0               6
  T3+T4             6              60
D314V5, binary
                 cls
clus               0  1
  CNGB1 MUTATED    2  4
  CNGB1 WILD-TYPE 15 50
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CNGB1 MUTATED      2    4
  CNGB1 WILD-TYPE   15   50
   clus
vv  CNGB1 MUTATED CNGB1 WILD-TYPE
  0             2              15
  1             4              50
                 vv
clus              M0 M1 MX
  CNGB1 MUTATED    2  1  3
  CNGB1 WILD-TYPE 37  2 27
D314V6, multiclass
    clus
vv   CNGB1 MUTATED CNGB1 WILD-TYPE
  M0             2              37
  M1             1               2
  MX             3              27
D314V7, binary
                 cls
clus               0  1
  CNGB1 MUTATED    3  3
  CNGB1 WILD-TYPE 33 33
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CNGB1 MUTATED      3    3
  CNGB1 WILD-TYPE   33   33
        clus
vv       CNGB1 MUTATED CNGB1 WILD-TYPE
  FEMALE             3              33
  MALE               3              33
                 vv
clus              PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  CNGB1 MUTATED                                     5
  CNGB1 WILD-TYPE                                  60
                 vv
clus              PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  CNGB1 MUTATED                                       1
  CNGB1 WILD-TYPE                                     3
                 vv
clus              PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  CNGB1 MUTATED                                                  0
  CNGB1 WILD-TYPE                                                2
D314V8, multiclass
                                                  clus
vv                                                 CNGB1 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                          5
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                        1
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA             0
                                                  clus
vv                                                 CNGB1 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                           60
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                          3
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA               2
D314V9, continuous
[1] "Remove cluster labels:" "CNGB1 MUTATED"         
clus
  CNGB1 MUTATED CNGB1 WILD-TYPE 
              2              20 
     TCGA-F2-6880      TCGA-FB-A4P5      TCGA-FB-A4P6      TCGA-FB-A5VM 
"CNGB1 WILD-TYPE" "CNGB1 WILD-TYPE" "CNGB1 WILD-TYPE" "CNGB1 WILD-TYPE" 
     TCGA-FB-A78T      TCGA-FB-A7DR      TCGA-H6-8124      TCGA-H6-A45N 
"CNGB1 WILD-TYPE" "CNGB1 WILD-TYPE" "CNGB1 WILD-TYPE" "CNGB1 WILD-TYPE" 
     TCGA-H8-A6C1      TCGA-IB-7649      TCGA-IB-7885      TCGA-IB-7886 
"CNGB1 WILD-TYPE" "CNGB1 WILD-TYPE" "CNGB1 WILD-TYPE" "CNGB1 WILD-TYPE" 
     TCGA-IB-7887      TCGA-IB-7891      TCGA-IB-8126      TCGA-IB-8127 
"CNGB1 WILD-TYPE" "CNGB1 WILD-TYPE" "CNGB1 WILD-TYPE" "CNGB1 WILD-TYPE" 
     TCGA-IB-A5SS      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"CNGB1 WILD-TYPE" "CNGB1 WILD-TYPE" "CNGB1 WILD-TYPE" "CNGB1 WILD-TYPE" 
D314V10, continuous
[1] "Remove cluster labels:" "CNGB1 MUTATED"         
clus
  CNGB1 MUTATED CNGB1 WILD-TYPE 
              2              17 
     TCGA-FB-A4P5      TCGA-FB-A4P6      TCGA-FB-A5VM      TCGA-FB-A78T 
"CNGB1 WILD-TYPE" "CNGB1 WILD-TYPE" "CNGB1 WILD-TYPE" "CNGB1 WILD-TYPE" 
     TCGA-FB-A7DR      TCGA-H6-8124      TCGA-H8-A6C1      TCGA-IB-7649 
"CNGB1 WILD-TYPE" "CNGB1 WILD-TYPE" "CNGB1 WILD-TYPE" "CNGB1 WILD-TYPE" 
     TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7891      TCGA-IB-8126 
"CNGB1 WILD-TYPE" "CNGB1 WILD-TYPE" "CNGB1 WILD-TYPE" "CNGB1 WILD-TYPE" 
     TCGA-IB-8127      TCGA-IB-A5SS      TCGA-IB-A6UG      TCGA-LB-A7SX 
"CNGB1 WILD-TYPE" "CNGB1 WILD-TYPE" "CNGB1 WILD-TYPE" "CNGB1 WILD-TYPE" 
     TCGA-OE-A75W 
"CNGB1 WILD-TYPE" 
                 vv
clus              R0 R1 RX
  CNGB1 MUTATED    4  2  0
  CNGB1 WILD-TYPE 38 22  2
D314V11, multiclass
    clus
vv   CNGB1 MUTATED CNGB1 WILD-TYPE
  R0             4              38
  R1             2              22
  RX             0               2
D314V12, continuous

Clustering(315) Variable = ATP4A MUTATION ANALYSIS
D315V1, survival
                 sevent
clus2              0  1
  ATP4A MUTATED    3  4
  ATP4A WILD-TYPE 37 25
  ATP4A MUTATED ATP4A WILD-TYPE 
              7              62 
  ATP4A MUTATED ATP4A WILD-TYPE 
              4              25 
$`ATP4A MUTATED`
TCGA-HZ-7919 TCGA-HZ-8005 TCGA-HZ-8636 TCGA-HZ-A49H TCGA-IB-7644 TCGA-IB-7651 
        0.66         3.95         0.16         0.95        11.41        19.82 
TCGA-IB-7888 
       43.79 

$`ATP4A WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P5 TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR 
        0.13        11.93        12.66         2.47         0.03         5.46 
TCGA-FZ-5920 TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 
        2.01        36.20        20.81        12.89         7.66        13.02 
TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 
        7.89         0.92         0.13         0.26        12.13        11.87 
TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8315 TCGA-HZ-8317 
        0.26         0.62         0.79         0.69         0.92         0.53 
TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7645 TCGA-IB-7646 
        2.99         0.76         6.38         1.51        49.38         4.77 
TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 
       21.90        15.35        15.65        27.98         4.04         3.62 
TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-8126 
       15.81        19.66        16.04         3.85        15.98         0.56 
TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST 
       17.16        10.82         9.86         7.20        15.12         0.26 
TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 
        1.35         4.18         3.62         8.12        13.68        16.80 
TCGA-US-A77E TCGA-US-A77J 
       14.14        18.67 

  ATP4A MUTATED ATP4A WILD-TYPE 
           0.16            0.03 
  ATP4A MUTATED ATP4A WILD-TYPE 
          43.79           49.38 
  ATP4A MUTATED ATP4A WILD-TYPE 
          3.950           7.775 
[1] "0.2 - 43.8 (4.0)" "0.0 - 49.4 (7.8)"
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"ATP4A WILD-TYPE" "ATP4A WILD-TYPE" "ATP4A WILD-TYPE" "ATP4A WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"ATP4A WILD-TYPE" "ATP4A WILD-TYPE" "ATP4A WILD-TYPE" "ATP4A WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"ATP4A WILD-TYPE" "ATP4A WILD-TYPE" "ATP4A WILD-TYPE" "ATP4A WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"ATP4A WILD-TYPE" "ATP4A WILD-TYPE" "ATP4A WILD-TYPE" "ATP4A WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"ATP4A WILD-TYPE" "ATP4A WILD-TYPE" "ATP4A WILD-TYPE" "ATP4A WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
  "ATP4A MUTATED" "ATP4A WILD-TYPE" "ATP4A WILD-TYPE" "ATP4A WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"ATP4A WILD-TYPE" "ATP4A WILD-TYPE" "ATP4A WILD-TYPE" "ATP4A WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"ATP4A WILD-TYPE"   "ATP4A MUTATED" "ATP4A WILD-TYPE" "ATP4A WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
  "ATP4A MUTATED" "ATP4A WILD-TYPE" "ATP4A WILD-TYPE"   "ATP4A MUTATED" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"ATP4A WILD-TYPE" "ATP4A WILD-TYPE"   "ATP4A MUTATED" "ATP4A WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"ATP4A WILD-TYPE" "ATP4A WILD-TYPE" "ATP4A WILD-TYPE"   "ATP4A MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"ATP4A WILD-TYPE" "ATP4A WILD-TYPE" "ATP4A WILD-TYPE" "ATP4A WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
  "ATP4A MUTATED" "ATP4A WILD-TYPE" "ATP4A WILD-TYPE" "ATP4A WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"ATP4A WILD-TYPE" "ATP4A WILD-TYPE" "ATP4A WILD-TYPE" "ATP4A WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"ATP4A WILD-TYPE" "ATP4A WILD-TYPE" "ATP4A WILD-TYPE" "ATP4A WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"ATP4A WILD-TYPE" "ATP4A WILD-TYPE" "ATP4A WILD-TYPE" "ATP4A WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"ATP4A WILD-TYPE" "ATP4A WILD-TYPE" "ATP4A WILD-TYPE" "ATP4A WILD-TYPE" 
     TCGA-US-A77J 
"ATP4A WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"ATP4A WILD-TYPE" "ATP4A WILD-TYPE" "ATP4A WILD-TYPE" "ATP4A WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"ATP4A WILD-TYPE" "ATP4A WILD-TYPE" "ATP4A WILD-TYPE" "ATP4A WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"ATP4A WILD-TYPE" "ATP4A WILD-TYPE" "ATP4A WILD-TYPE" "ATP4A WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"ATP4A WILD-TYPE" "ATP4A WILD-TYPE" "ATP4A WILD-TYPE" "ATP4A WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"ATP4A WILD-TYPE" "ATP4A WILD-TYPE" "ATP4A WILD-TYPE" "ATP4A WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
  "ATP4A MUTATED" "ATP4A WILD-TYPE" "ATP4A WILD-TYPE" "ATP4A WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"ATP4A WILD-TYPE" "ATP4A WILD-TYPE" "ATP4A WILD-TYPE" "ATP4A WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"ATP4A WILD-TYPE"   "ATP4A MUTATED" "ATP4A WILD-TYPE" "ATP4A WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
  "ATP4A MUTATED" "ATP4A WILD-TYPE" "ATP4A WILD-TYPE"   "ATP4A MUTATED" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"ATP4A WILD-TYPE" "ATP4A WILD-TYPE"   "ATP4A MUTATED" "ATP4A WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"ATP4A WILD-TYPE" "ATP4A WILD-TYPE" "ATP4A WILD-TYPE"   "ATP4A MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"ATP4A WILD-TYPE" "ATP4A WILD-TYPE" "ATP4A WILD-TYPE" "ATP4A WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
  "ATP4A MUTATED" "ATP4A WILD-TYPE" "ATP4A WILD-TYPE" "ATP4A WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"ATP4A WILD-TYPE" "ATP4A WILD-TYPE" "ATP4A WILD-TYPE" "ATP4A WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"ATP4A WILD-TYPE" "ATP4A WILD-TYPE" "ATP4A WILD-TYPE" "ATP4A WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"ATP4A WILD-TYPE" "ATP4A WILD-TYPE" "ATP4A WILD-TYPE" "ATP4A WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"ATP4A WILD-TYPE" "ATP4A WILD-TYPE" "ATP4A WILD-TYPE" "ATP4A WILD-TYPE" 
     TCGA-US-A77J 
"ATP4A WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"ATP4A WILD-TYPE" "ATP4A WILD-TYPE" "ATP4A WILD-TYPE" "ATP4A WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"ATP4A WILD-TYPE" "ATP4A WILD-TYPE" "ATP4A WILD-TYPE" "ATP4A WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"ATP4A WILD-TYPE" "ATP4A WILD-TYPE" "ATP4A WILD-TYPE" "ATP4A WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"ATP4A WILD-TYPE" "ATP4A WILD-TYPE" "ATP4A WILD-TYPE" "ATP4A WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"ATP4A WILD-TYPE" "ATP4A WILD-TYPE" "ATP4A WILD-TYPE" "ATP4A WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
  "ATP4A MUTATED" "ATP4A WILD-TYPE" "ATP4A WILD-TYPE" "ATP4A WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"ATP4A WILD-TYPE" "ATP4A WILD-TYPE" "ATP4A WILD-TYPE" "ATP4A WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"ATP4A WILD-TYPE"   "ATP4A MUTATED" "ATP4A WILD-TYPE" "ATP4A WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
  "ATP4A MUTATED" "ATP4A WILD-TYPE" "ATP4A WILD-TYPE"   "ATP4A MUTATED" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"ATP4A WILD-TYPE" "ATP4A WILD-TYPE"   "ATP4A MUTATED" "ATP4A WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"ATP4A WILD-TYPE" "ATP4A WILD-TYPE" "ATP4A WILD-TYPE"   "ATP4A MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"ATP4A WILD-TYPE" "ATP4A WILD-TYPE" "ATP4A WILD-TYPE" "ATP4A WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
  "ATP4A MUTATED" "ATP4A WILD-TYPE" "ATP4A WILD-TYPE" "ATP4A WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"ATP4A WILD-TYPE" "ATP4A WILD-TYPE" "ATP4A WILD-TYPE" "ATP4A WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"ATP4A WILD-TYPE" "ATP4A WILD-TYPE" "ATP4A WILD-TYPE" "ATP4A WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"ATP4A WILD-TYPE" "ATP4A WILD-TYPE" "ATP4A WILD-TYPE" "ATP4A WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"ATP4A WILD-TYPE" "ATP4A WILD-TYPE" "ATP4A WILD-TYPE" "ATP4A WILD-TYPE" 
     TCGA-US-A77J 
"ATP4A WILD-TYPE" 
[1] "hr=" "1"  
D315V2, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  ATP4A MUTATED          0        0         1         4         0        2
  ATP4A WILD-TYPE        1        4        10        47         2        1
D315V3, multiclass
                 vv
clus              T1+T2 T3+T4
  ATP4A MUTATED       0     7
  ATP4A WILD-TYPE     6    59
D315V4, multiclass
       clus
vv      ATP4A MUTATED ATP4A WILD-TYPE
  T1+T2             0               6
  T3+T4             7              59
D315V5, binary
                 cls
clus               0  1
  ATP4A MUTATED    2  5
  ATP4A WILD-TYPE 15 49
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ATP4A MUTATED      2    5
  ATP4A WILD-TYPE   15   49
   clus
vv  ATP4A MUTATED ATP4A WILD-TYPE
  0             2              15
  1             5              49
                 vv
clus              M0 M1 MX
  ATP4A MUTATED    3  2  2
  ATP4A WILD-TYPE 36  1 28
D315V6, multiclass
    clus
vv   ATP4A MUTATED ATP4A WILD-TYPE
  M0             3              36
  M1             2               1
  MX             2              28
D315V7, binary
                 cls
clus               0  1
  ATP4A MUTATED    6  1
  ATP4A WILD-TYPE 30 35
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ATP4A MUTATED      6    1
  ATP4A WILD-TYPE   30   35
        clus
vv       ATP4A MUTATED ATP4A WILD-TYPE
  FEMALE             6              30
  MALE               1              35
                 vv
clus              PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  ATP4A MUTATED                                     7
  ATP4A WILD-TYPE                                  58
                 vv
clus              PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  ATP4A MUTATED                                       0
  ATP4A WILD-TYPE                                     4
                 vv
clus              PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  ATP4A MUTATED                                                  0
  ATP4A WILD-TYPE                                                2
D315V8, multiclass
                                                  clus
vv                                                 ATP4A MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                          7
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                        0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA             0
                                                  clus
vv                                                 ATP4A WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                           58
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                          4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA               2
D315V9, continuous
[1] "Remove cluster labels:" "ATP4A MUTATED"         
clus
  ATP4A MUTATED ATP4A WILD-TYPE 
              2              20 
     TCGA-F2-6880      TCGA-FB-A4P5      TCGA-FB-A4P6      TCGA-FB-A5VM 
"ATP4A WILD-TYPE" "ATP4A WILD-TYPE" "ATP4A WILD-TYPE" "ATP4A WILD-TYPE" 
     TCGA-FB-A78T      TCGA-FB-A7DR      TCGA-H6-8124      TCGA-H6-A45N 
"ATP4A WILD-TYPE" "ATP4A WILD-TYPE" "ATP4A WILD-TYPE" "ATP4A WILD-TYPE" 
     TCGA-H8-A6C1      TCGA-IB-7649      TCGA-IB-7885      TCGA-IB-7886 
"ATP4A WILD-TYPE" "ATP4A WILD-TYPE" "ATP4A WILD-TYPE" "ATP4A WILD-TYPE" 
     TCGA-IB-7887      TCGA-IB-7891      TCGA-IB-8126      TCGA-IB-8127 
"ATP4A WILD-TYPE" "ATP4A WILD-TYPE" "ATP4A WILD-TYPE" "ATP4A WILD-TYPE" 
     TCGA-IB-A5SS      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"ATP4A WILD-TYPE" "ATP4A WILD-TYPE" "ATP4A WILD-TYPE" "ATP4A WILD-TYPE" 
D315V10, continuous
[1] "Remove cluster labels:" "ATP4A MUTATED"         
clus
  ATP4A MUTATED ATP4A WILD-TYPE 
              2              17 
     TCGA-FB-A4P5      TCGA-FB-A4P6      TCGA-FB-A5VM      TCGA-FB-A78T 
"ATP4A WILD-TYPE" "ATP4A WILD-TYPE" "ATP4A WILD-TYPE" "ATP4A WILD-TYPE" 
     TCGA-FB-A7DR      TCGA-H6-8124      TCGA-H8-A6C1      TCGA-IB-7649 
"ATP4A WILD-TYPE" "ATP4A WILD-TYPE" "ATP4A WILD-TYPE" "ATP4A WILD-TYPE" 
     TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7891      TCGA-IB-8126 
"ATP4A WILD-TYPE" "ATP4A WILD-TYPE" "ATP4A WILD-TYPE" "ATP4A WILD-TYPE" 
     TCGA-IB-8127      TCGA-IB-A5SS      TCGA-IB-A6UG      TCGA-LB-A7SX 
"ATP4A WILD-TYPE" "ATP4A WILD-TYPE" "ATP4A WILD-TYPE" "ATP4A WILD-TYPE" 
     TCGA-OE-A75W 
"ATP4A WILD-TYPE" 
                 vv
clus              R0 R1 RX
  ATP4A MUTATED    3  4  0
  ATP4A WILD-TYPE 39 20  2
D315V11, multiclass
    clus
vv   ATP4A MUTATED ATP4A WILD-TYPE
  R0             3              39
  R1             4              20
  RX             0               2
D315V12, continuous

Clustering(316) Variable = HSD17B7 MUTATION ANALYSIS
D316V1, survival
                   sevent
clus2                0  1
  HSD17B7 MUTATED    3  0
  HSD17B7 WILD-TYPE 37 29
  HSD17B7 MUTATED HSD17B7 WILD-TYPE 
                3                66 
  HSD17B7 MUTATED HSD17B7 WILD-TYPE 
                0                29 
$`HSD17B7 MUTATED`
TCGA-FB-A7DR TCGA-HZ-8317 TCGA-IB-8127 
        5.46         0.53        17.16 

$`HSD17B7 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P5 TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FZ-5920 
        0.13        11.93        12.66         2.47         0.03         2.01 
TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7289 
       36.20        20.81        12.89         7.66        13.02         7.89 
TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 
        0.92         0.66         0.13         0.26        12.13        11.87 
TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 
        0.26         0.62         0.79         0.69         3.95         0.92 
TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK 
        0.16         2.99         0.76         0.95         6.38         1.51 
TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7651 
       11.41        49.38         4.77        21.90        15.35        19.82 
TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 
       15.65        27.98         4.04         3.62        43.79        15.81 
TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-A5SO 
       19.66        16.04         3.85        15.98         0.56        10.82 
TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX 
        9.86         7.20        15.12         0.26         1.35         4.18 
TCGA-OE-A75W TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
        3.62         8.12        13.68        16.80        14.14        18.67 

  HSD17B7 MUTATED HSD17B7 WILD-TYPE 
             0.53              0.03 
  HSD17B7 MUTATED HSD17B7 WILD-TYPE 
            17.16             49.38 
  HSD17B7 MUTATED HSD17B7 WILD-TYPE 
            5.460             7.775 
[1] "0.5 - 17.2 (5.5)" "0.0 - 49.4 (7.8)"
       TCGA-F2-6879        TCGA-F2-6880        TCGA-F2-7273        TCGA-F2-7276 
"HSD17B7 WILD-TYPE" "HSD17B7 WILD-TYPE" "HSD17B7 WILD-TYPE" "HSD17B7 WILD-TYPE" 
       TCGA-F2-A44G        TCGA-F2-A44H        TCGA-FB-A4P5        TCGA-FB-A4P6 
"HSD17B7 WILD-TYPE" "HSD17B7 WILD-TYPE" "HSD17B7 WILD-TYPE" "HSD17B7 WILD-TYPE" 
       TCGA-FB-A545        TCGA-FB-A5VM        TCGA-FB-A78T        TCGA-FB-A7DR 
"HSD17B7 WILD-TYPE" "HSD17B7 WILD-TYPE" "HSD17B7 WILD-TYPE"   "HSD17B7 MUTATED" 
       TCGA-FZ-5920        TCGA-FZ-5922        TCGA-FZ-5923        TCGA-H6-8124 
"HSD17B7 WILD-TYPE" "HSD17B7 WILD-TYPE" "HSD17B7 WILD-TYPE" "HSD17B7 WILD-TYPE" 
       TCGA-H6-A45N        TCGA-H8-A6C1        TCGA-HZ-7289        TCGA-HZ-7918 
"HSD17B7 WILD-TYPE" "HSD17B7 WILD-TYPE" "HSD17B7 WILD-TYPE" "HSD17B7 WILD-TYPE" 
       TCGA-HZ-7919        TCGA-HZ-7922        TCGA-HZ-7923        TCGA-HZ-7924 
"HSD17B7 WILD-TYPE" "HSD17B7 WILD-TYPE" "HSD17B7 WILD-TYPE" "HSD17B7 WILD-TYPE" 
       TCGA-HZ-7925        TCGA-HZ-7926        TCGA-HZ-8001        TCGA-HZ-8002 
"HSD17B7 WILD-TYPE" "HSD17B7 WILD-TYPE" "HSD17B7 WILD-TYPE" "HSD17B7 WILD-TYPE" 
       TCGA-HZ-8003        TCGA-HZ-8005        TCGA-HZ-8315        TCGA-HZ-8317 
"HSD17B7 WILD-TYPE" "HSD17B7 WILD-TYPE" "HSD17B7 WILD-TYPE"   "HSD17B7 MUTATED" 
       TCGA-HZ-8636        TCGA-HZ-8638        TCGA-HZ-A49G        TCGA-HZ-A49H 
"HSD17B7 WILD-TYPE" "HSD17B7 WILD-TYPE" "HSD17B7 WILD-TYPE" "HSD17B7 WILD-TYPE" 
       TCGA-HZ-A4BH        TCGA-HZ-A4BK        TCGA-IB-7644        TCGA-IB-7645 
"HSD17B7 WILD-TYPE" "HSD17B7 WILD-TYPE" "HSD17B7 WILD-TYPE" "HSD17B7 WILD-TYPE" 
       TCGA-IB-7646        TCGA-IB-7647        TCGA-IB-7649        TCGA-IB-7651 
"HSD17B7 WILD-TYPE" "HSD17B7 WILD-TYPE" "HSD17B7 WILD-TYPE" "HSD17B7 WILD-TYPE" 
       TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-7886        TCGA-IB-7887 
"HSD17B7 WILD-TYPE" "HSD17B7 WILD-TYPE" "HSD17B7 WILD-TYPE" "HSD17B7 WILD-TYPE" 
       TCGA-IB-7888        TCGA-IB-7889        TCGA-IB-7890        TCGA-IB-7891 
"HSD17B7 WILD-TYPE" "HSD17B7 WILD-TYPE" "HSD17B7 WILD-TYPE" "HSD17B7 WILD-TYPE" 
       TCGA-IB-7893        TCGA-IB-7897        TCGA-IB-8126        TCGA-IB-8127 
"HSD17B7 WILD-TYPE" "HSD17B7 WILD-TYPE" "HSD17B7 WILD-TYPE"   "HSD17B7 MUTATED" 
       TCGA-IB-A5SO        TCGA-IB-A5SP        TCGA-IB-A5SQ        TCGA-IB-A5SS 
"HSD17B7 WILD-TYPE" "HSD17B7 WILD-TYPE" "HSD17B7 WILD-TYPE" "HSD17B7 WILD-TYPE" 
       TCGA-IB-A5ST        TCGA-IB-A6UG        TCGA-LB-A7SX        TCGA-OE-A75W 
"HSD17B7 WILD-TYPE" "HSD17B7 WILD-TYPE" "HSD17B7 WILD-TYPE" "HSD17B7 WILD-TYPE" 
       TCGA-PZ-A5RE        TCGA-Q3-A5QY        TCGA-US-A779        TCGA-US-A77E 
"HSD17B7 WILD-TYPE" "HSD17B7 WILD-TYPE" "HSD17B7 WILD-TYPE" "HSD17B7 WILD-TYPE" 
       TCGA-US-A77J 
"HSD17B7 WILD-TYPE" 
       TCGA-F2-6879        TCGA-F2-6880        TCGA-F2-7273        TCGA-F2-7276 
"HSD17B7 WILD-TYPE" "HSD17B7 WILD-TYPE" "HSD17B7 WILD-TYPE" "HSD17B7 WILD-TYPE" 
       TCGA-F2-A44G        TCGA-F2-A44H        TCGA-FB-A4P5        TCGA-FB-A4P6 
"HSD17B7 WILD-TYPE" "HSD17B7 WILD-TYPE" "HSD17B7 WILD-TYPE" "HSD17B7 WILD-TYPE" 
       TCGA-FB-A545        TCGA-FB-A5VM        TCGA-FB-A78T        TCGA-FB-A7DR 
"HSD17B7 WILD-TYPE" "HSD17B7 WILD-TYPE" "HSD17B7 WILD-TYPE"   "HSD17B7 MUTATED" 
       TCGA-FZ-5920        TCGA-FZ-5922        TCGA-FZ-5923        TCGA-H6-8124 
"HSD17B7 WILD-TYPE" "HSD17B7 WILD-TYPE" "HSD17B7 WILD-TYPE" "HSD17B7 WILD-TYPE" 
       TCGA-H6-A45N        TCGA-H8-A6C1        TCGA-HZ-7289        TCGA-HZ-7918 
"HSD17B7 WILD-TYPE" "HSD17B7 WILD-TYPE" "HSD17B7 WILD-TYPE" "HSD17B7 WILD-TYPE" 
       TCGA-HZ-7919        TCGA-HZ-7922        TCGA-HZ-7923        TCGA-HZ-7924 
"HSD17B7 WILD-TYPE" "HSD17B7 WILD-TYPE" "HSD17B7 WILD-TYPE" "HSD17B7 WILD-TYPE" 
       TCGA-HZ-7925        TCGA-HZ-7926        TCGA-HZ-8001        TCGA-HZ-8002 
"HSD17B7 WILD-TYPE" "HSD17B7 WILD-TYPE" "HSD17B7 WILD-TYPE" "HSD17B7 WILD-TYPE" 
       TCGA-HZ-8003        TCGA-HZ-8005        TCGA-HZ-8315        TCGA-HZ-8317 
"HSD17B7 WILD-TYPE" "HSD17B7 WILD-TYPE" "HSD17B7 WILD-TYPE"   "HSD17B7 MUTATED" 
       TCGA-HZ-8636        TCGA-HZ-8638        TCGA-HZ-A49G        TCGA-HZ-A49H 
"HSD17B7 WILD-TYPE" "HSD17B7 WILD-TYPE" "HSD17B7 WILD-TYPE" "HSD17B7 WILD-TYPE" 
       TCGA-HZ-A4BH        TCGA-HZ-A4BK        TCGA-IB-7644        TCGA-IB-7645 
"HSD17B7 WILD-TYPE" "HSD17B7 WILD-TYPE" "HSD17B7 WILD-TYPE" "HSD17B7 WILD-TYPE" 
       TCGA-IB-7646        TCGA-IB-7647        TCGA-IB-7649        TCGA-IB-7651 
"HSD17B7 WILD-TYPE" "HSD17B7 WILD-TYPE" "HSD17B7 WILD-TYPE" "HSD17B7 WILD-TYPE" 
       TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-7886        TCGA-IB-7887 
"HSD17B7 WILD-TYPE" "HSD17B7 WILD-TYPE" "HSD17B7 WILD-TYPE" "HSD17B7 WILD-TYPE" 
       TCGA-IB-7888        TCGA-IB-7889        TCGA-IB-7890        TCGA-IB-7891 
"HSD17B7 WILD-TYPE" "HSD17B7 WILD-TYPE" "HSD17B7 WILD-TYPE" "HSD17B7 WILD-TYPE" 
       TCGA-IB-7893        TCGA-IB-7897        TCGA-IB-8126        TCGA-IB-8127 
"HSD17B7 WILD-TYPE" "HSD17B7 WILD-TYPE" "HSD17B7 WILD-TYPE"   "HSD17B7 MUTATED" 
       TCGA-IB-A5SO        TCGA-IB-A5SP        TCGA-IB-A5SQ        TCGA-IB-A5SS 
"HSD17B7 WILD-TYPE" "HSD17B7 WILD-TYPE" "HSD17B7 WILD-TYPE" "HSD17B7 WILD-TYPE" 
       TCGA-IB-A5ST        TCGA-IB-A6UG        TCGA-LB-A7SX        TCGA-OE-A75W 
"HSD17B7 WILD-TYPE" "HSD17B7 WILD-TYPE" "HSD17B7 WILD-TYPE" "HSD17B7 WILD-TYPE" 
       TCGA-PZ-A5RE        TCGA-Q3-A5QY        TCGA-US-A779        TCGA-US-A77E 
"HSD17B7 WILD-TYPE" "HSD17B7 WILD-TYPE" "HSD17B7 WILD-TYPE" "HSD17B7 WILD-TYPE" 
       TCGA-US-A77J 
"HSD17B7 WILD-TYPE" 
       TCGA-F2-6879        TCGA-F2-6880        TCGA-F2-7273        TCGA-F2-7276 
"HSD17B7 WILD-TYPE" "HSD17B7 WILD-TYPE" "HSD17B7 WILD-TYPE" "HSD17B7 WILD-TYPE" 
       TCGA-F2-A44G        TCGA-F2-A44H        TCGA-FB-A4P5        TCGA-FB-A4P6 
"HSD17B7 WILD-TYPE" "HSD17B7 WILD-TYPE" "HSD17B7 WILD-TYPE" "HSD17B7 WILD-TYPE" 
       TCGA-FB-A545        TCGA-FB-A5VM        TCGA-FB-A78T        TCGA-FB-A7DR 
"HSD17B7 WILD-TYPE" "HSD17B7 WILD-TYPE" "HSD17B7 WILD-TYPE"   "HSD17B7 MUTATED" 
       TCGA-FZ-5920        TCGA-FZ-5922        TCGA-FZ-5923        TCGA-H6-8124 
"HSD17B7 WILD-TYPE" "HSD17B7 WILD-TYPE" "HSD17B7 WILD-TYPE" "HSD17B7 WILD-TYPE" 
       TCGA-H6-A45N        TCGA-H8-A6C1        TCGA-HZ-7289        TCGA-HZ-7918 
"HSD17B7 WILD-TYPE" "HSD17B7 WILD-TYPE" "HSD17B7 WILD-TYPE" "HSD17B7 WILD-TYPE" 
       TCGA-HZ-7919        TCGA-HZ-7922        TCGA-HZ-7923        TCGA-HZ-7924 
"HSD17B7 WILD-TYPE" "HSD17B7 WILD-TYPE" "HSD17B7 WILD-TYPE" "HSD17B7 WILD-TYPE" 
       TCGA-HZ-7925        TCGA-HZ-7926        TCGA-HZ-8001        TCGA-HZ-8002 
"HSD17B7 WILD-TYPE" "HSD17B7 WILD-TYPE" "HSD17B7 WILD-TYPE" "HSD17B7 WILD-TYPE" 
       TCGA-HZ-8003        TCGA-HZ-8005        TCGA-HZ-8315        TCGA-HZ-8317 
"HSD17B7 WILD-TYPE" "HSD17B7 WILD-TYPE" "HSD17B7 WILD-TYPE"   "HSD17B7 MUTATED" 
       TCGA-HZ-8636        TCGA-HZ-8638        TCGA-HZ-A49G        TCGA-HZ-A49H 
"HSD17B7 WILD-TYPE" "HSD17B7 WILD-TYPE" "HSD17B7 WILD-TYPE" "HSD17B7 WILD-TYPE" 
       TCGA-HZ-A4BH        TCGA-HZ-A4BK        TCGA-IB-7644        TCGA-IB-7645 
"HSD17B7 WILD-TYPE" "HSD17B7 WILD-TYPE" "HSD17B7 WILD-TYPE" "HSD17B7 WILD-TYPE" 
       TCGA-IB-7646        TCGA-IB-7647        TCGA-IB-7649        TCGA-IB-7651 
"HSD17B7 WILD-TYPE" "HSD17B7 WILD-TYPE" "HSD17B7 WILD-TYPE" "HSD17B7 WILD-TYPE" 
       TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-7886        TCGA-IB-7887 
"HSD17B7 WILD-TYPE" "HSD17B7 WILD-TYPE" "HSD17B7 WILD-TYPE" "HSD17B7 WILD-TYPE" 
       TCGA-IB-7888        TCGA-IB-7889        TCGA-IB-7890        TCGA-IB-7891 
"HSD17B7 WILD-TYPE" "HSD17B7 WILD-TYPE" "HSD17B7 WILD-TYPE" "HSD17B7 WILD-TYPE" 
       TCGA-IB-7893        TCGA-IB-7897        TCGA-IB-8126        TCGA-IB-8127 
"HSD17B7 WILD-TYPE" "HSD17B7 WILD-TYPE" "HSD17B7 WILD-TYPE"   "HSD17B7 MUTATED" 
       TCGA-IB-A5SO        TCGA-IB-A5SP        TCGA-IB-A5SQ        TCGA-IB-A5SS 
"HSD17B7 WILD-TYPE" "HSD17B7 WILD-TYPE" "HSD17B7 WILD-TYPE" "HSD17B7 WILD-TYPE" 
       TCGA-IB-A5ST        TCGA-IB-A6UG        TCGA-LB-A7SX        TCGA-OE-A75W 
"HSD17B7 WILD-TYPE" "HSD17B7 WILD-TYPE" "HSD17B7 WILD-TYPE" "HSD17B7 WILD-TYPE" 
       TCGA-PZ-A5RE        TCGA-Q3-A5QY        TCGA-US-A779        TCGA-US-A77E 
"HSD17B7 WILD-TYPE" "HSD17B7 WILD-TYPE" "HSD17B7 WILD-TYPE" "HSD17B7 WILD-TYPE" 
       TCGA-US-A77J 
"HSD17B7 WILD-TYPE" 
[1] "hr="     "2.6e+07"
D316V2, continuous
                   vv
clus                STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  HSD17B7 MUTATED          0        0         1         2         0        0
  HSD17B7 WILD-TYPE        1        4        10        49         2        3
D316V3, multiclass
                   vv
clus                T1+T2 T3+T4
  HSD17B7 MUTATED       0     3
  HSD17B7 WILD-TYPE     6    63
D316V4, multiclass
       clus
vv      HSD17B7 MUTATED HSD17B7 WILD-TYPE
  T1+T2               0                 6
  T3+T4               3                63
D316V5, binary
                   cls
clus                 0  1
  HSD17B7 MUTATED    0  2
  HSD17B7 WILD-TYPE 17 52
[1] "tbl2"
                   cls
clus                [,1] [,2]
  HSD17B7 MUTATED      0    2
  HSD17B7 WILD-TYPE   17   52
   clus
vv  HSD17B7 MUTATED HSD17B7 WILD-TYPE
  0               0                17
  1               2                52
                   vv
clus                M0 M1 MX
  HSD17B7 MUTATED    2  0  1
  HSD17B7 WILD-TYPE 37  3 29
D316V6, multiclass
    clus
vv   HSD17B7 MUTATED HSD17B7 WILD-TYPE
  M0               2                37
  M1               0                 3
  MX               1                29
D316V7, binary
                   cls
clus                 0  1
  HSD17B7 MUTATED    1  2
  HSD17B7 WILD-TYPE 35 34
[1] "tbl2"
                   cls
clus                [,1] [,2]
  HSD17B7 MUTATED      1    2
  HSD17B7 WILD-TYPE   35   34
        clus
vv       HSD17B7 MUTATED HSD17B7 WILD-TYPE
  FEMALE               1                35
  MALE                 2                34
                   vv
clus                PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  HSD17B7 MUTATED                                     2
  HSD17B7 WILD-TYPE                                  63
                   vv
clus                PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  HSD17B7 MUTATED                                       0
  HSD17B7 WILD-TYPE                                     4
                   vv
clus                PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  HSD17B7 MUTATED                                                  1
  HSD17B7 WILD-TYPE                                                1
D316V8, multiclass
                                                  clus
vv                                                 HSD17B7 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                            2
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                          0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA               1
                                                  clus
vv                                                 HSD17B7 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                             63
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                            4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                 1
D316V9, continuous
[1] "Remove cluster labels:" "HSD17B7 MUTATED"       
clus
  HSD17B7 MUTATED HSD17B7 WILD-TYPE 
                2                20 
       TCGA-F2-6880        TCGA-FB-A4P5        TCGA-FB-A4P6        TCGA-FB-A5VM 
"HSD17B7 WILD-TYPE" "HSD17B7 WILD-TYPE" "HSD17B7 WILD-TYPE" "HSD17B7 WILD-TYPE" 
       TCGA-FB-A78T        TCGA-H6-8124        TCGA-H6-A45N        TCGA-H8-A6C1 
"HSD17B7 WILD-TYPE" "HSD17B7 WILD-TYPE" "HSD17B7 WILD-TYPE" "HSD17B7 WILD-TYPE" 
       TCGA-IB-7644        TCGA-IB-7649        TCGA-IB-7651        TCGA-IB-7885 
"HSD17B7 WILD-TYPE" "HSD17B7 WILD-TYPE" "HSD17B7 WILD-TYPE" "HSD17B7 WILD-TYPE" 
       TCGA-IB-7886        TCGA-IB-7887        TCGA-IB-7891        TCGA-IB-8126 
"HSD17B7 WILD-TYPE" "HSD17B7 WILD-TYPE" "HSD17B7 WILD-TYPE" "HSD17B7 WILD-TYPE" 
       TCGA-IB-A5SS        TCGA-IB-A6UG        TCGA-LB-A7SX        TCGA-OE-A75W 
"HSD17B7 WILD-TYPE" "HSD17B7 WILD-TYPE" "HSD17B7 WILD-TYPE" "HSD17B7 WILD-TYPE" 
D316V10, continuous
[1] "Remove cluster labels:" "HSD17B7 MUTATED"       
clus
  HSD17B7 MUTATED HSD17B7 WILD-TYPE 
                2                17 
       TCGA-FB-A4P5        TCGA-FB-A4P6        TCGA-FB-A5VM        TCGA-FB-A78T 
"HSD17B7 WILD-TYPE" "HSD17B7 WILD-TYPE" "HSD17B7 WILD-TYPE" "HSD17B7 WILD-TYPE" 
       TCGA-H6-8124        TCGA-H8-A6C1        TCGA-IB-7644        TCGA-IB-7649 
"HSD17B7 WILD-TYPE" "HSD17B7 WILD-TYPE" "HSD17B7 WILD-TYPE" "HSD17B7 WILD-TYPE" 
       TCGA-IB-7651        TCGA-IB-7885        TCGA-IB-7886        TCGA-IB-7891 
"HSD17B7 WILD-TYPE" "HSD17B7 WILD-TYPE" "HSD17B7 WILD-TYPE" "HSD17B7 WILD-TYPE" 
       TCGA-IB-8126        TCGA-IB-A5SS        TCGA-IB-A6UG        TCGA-LB-A7SX 
"HSD17B7 WILD-TYPE" "HSD17B7 WILD-TYPE" "HSD17B7 WILD-TYPE" "HSD17B7 WILD-TYPE" 
       TCGA-OE-A75W 
"HSD17B7 WILD-TYPE" 
                   vv
clus                R0 R1 RX
  HSD17B7 MUTATED    1  2  0
  HSD17B7 WILD-TYPE 41 22  2
D316V11, multiclass
    clus
vv   HSD17B7 MUTATED HSD17B7 WILD-TYPE
  R0               1                41
  R1               2                22
  RX               0                 2
D316V12, continuous
[1] "Remove cluster labels:" "HSD17B7 MUTATED"       
clus
  HSD17B7 MUTATED HSD17B7 WILD-TYPE 
                2                69 
       TCGA-F2-6879        TCGA-F2-6880        TCGA-F2-7273        TCGA-F2-7276 
"HSD17B7 WILD-TYPE" "HSD17B7 WILD-TYPE" "HSD17B7 WILD-TYPE" "HSD17B7 WILD-TYPE" 
       TCGA-F2-A44G        TCGA-F2-A44H        TCGA-FB-A4P5        TCGA-FB-A4P6 
"HSD17B7 WILD-TYPE" "HSD17B7 WILD-TYPE" "HSD17B7 WILD-TYPE" "HSD17B7 WILD-TYPE" 
       TCGA-FB-A545        TCGA-FB-A5VM        TCGA-FB-A78T        TCGA-FZ-5920 
"HSD17B7 WILD-TYPE" "HSD17B7 WILD-TYPE" "HSD17B7 WILD-TYPE" "HSD17B7 WILD-TYPE" 
       TCGA-FZ-5922        TCGA-FZ-5923        TCGA-H6-8124        TCGA-H6-A45N 
"HSD17B7 WILD-TYPE" "HSD17B7 WILD-TYPE" "HSD17B7 WILD-TYPE" "HSD17B7 WILD-TYPE" 
       TCGA-H8-A6C1        TCGA-HZ-7289        TCGA-HZ-7918        TCGA-HZ-7919 
"HSD17B7 WILD-TYPE" "HSD17B7 WILD-TYPE" "HSD17B7 WILD-TYPE" "HSD17B7 WILD-TYPE" 
       TCGA-HZ-7920        TCGA-HZ-7922        TCGA-HZ-7923        TCGA-HZ-7924 
"HSD17B7 WILD-TYPE" "HSD17B7 WILD-TYPE" "HSD17B7 WILD-TYPE" "HSD17B7 WILD-TYPE" 
       TCGA-HZ-7925        TCGA-HZ-7926        TCGA-HZ-8001        TCGA-HZ-8002 
"HSD17B7 WILD-TYPE" "HSD17B7 WILD-TYPE" "HSD17B7 WILD-TYPE" "HSD17B7 WILD-TYPE" 
       TCGA-HZ-8003        TCGA-HZ-8005        TCGA-HZ-8315        TCGA-HZ-8636 
"HSD17B7 WILD-TYPE" "HSD17B7 WILD-TYPE" "HSD17B7 WILD-TYPE" "HSD17B7 WILD-TYPE" 
       TCGA-HZ-8637        TCGA-HZ-8638        TCGA-HZ-A49G        TCGA-HZ-A49H 
"HSD17B7 WILD-TYPE" "HSD17B7 WILD-TYPE" "HSD17B7 WILD-TYPE" "HSD17B7 WILD-TYPE" 
       TCGA-HZ-A49I        TCGA-HZ-A4BH        TCGA-HZ-A4BK        TCGA-IB-7644 
"HSD17B7 WILD-TYPE" "HSD17B7 WILD-TYPE" "HSD17B7 WILD-TYPE" "HSD17B7 WILD-TYPE" 
       TCGA-IB-7645        TCGA-IB-7646        TCGA-IB-7647        TCGA-IB-7649 
"HSD17B7 WILD-TYPE" "HSD17B7 WILD-TYPE" "HSD17B7 WILD-TYPE" "HSD17B7 WILD-TYPE" 
       TCGA-IB-7651        TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-7886 
"HSD17B7 WILD-TYPE" "HSD17B7 WILD-TYPE" "HSD17B7 WILD-TYPE" "HSD17B7 WILD-TYPE" 
       TCGA-IB-7887        TCGA-IB-7888        TCGA-IB-7889        TCGA-IB-7890 
"HSD17B7 WILD-TYPE" "HSD17B7 WILD-TYPE" "HSD17B7 WILD-TYPE" "HSD17B7 WILD-TYPE" 
       TCGA-IB-7891        TCGA-IB-7893        TCGA-IB-7897        TCGA-IB-8126 
"HSD17B7 WILD-TYPE" "HSD17B7 WILD-TYPE" "HSD17B7 WILD-TYPE" "HSD17B7 WILD-TYPE" 
       TCGA-IB-A5SO        TCGA-IB-A5SP        TCGA-IB-A5SQ        TCGA-IB-A5SS 
"HSD17B7 WILD-TYPE" "HSD17B7 WILD-TYPE" "HSD17B7 WILD-TYPE" "HSD17B7 WILD-TYPE" 
       TCGA-IB-A5ST        TCGA-IB-A6UG        TCGA-LB-A7SX        TCGA-OE-A75W 
"HSD17B7 WILD-TYPE" "HSD17B7 WILD-TYPE" "HSD17B7 WILD-TYPE" "HSD17B7 WILD-TYPE" 
       TCGA-PZ-A5RE        TCGA-Q3-A5QY        TCGA-US-A779        TCGA-US-A77E 
"HSD17B7 WILD-TYPE" "HSD17B7 WILD-TYPE" "HSD17B7 WILD-TYPE" "HSD17B7 WILD-TYPE" 
       TCGA-US-A77J 
"HSD17B7 WILD-TYPE" 

Clustering(317) Variable = INTS7 MUTATION ANALYSIS
D317V1, survival
                 sevent
clus2              0  1
  INTS7 MUTATED    4  4
  INTS7 WILD-TYPE 36 25
  INTS7 MUTATED INTS7 WILD-TYPE 
              8              61 
  INTS7 MUTATED INTS7 WILD-TYPE 
              4              25 
$`INTS7 MUTATED`
TCGA-F2-7273 TCGA-HZ-7923 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-A49G TCGA-IB-7651 
       11.84         0.26         0.79         0.69         0.76        19.82 
TCGA-IB-7890 TCGA-IB-7893 
       19.66         3.85 

$`INTS7 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H TCGA-FB-A4P5 
       10.98         9.70         7.10         5.03        19.27         0.13 
TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR TCGA-FZ-5920 
       11.93        12.66         2.47         0.03         5.46         2.01 
TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7289 
       36.20        20.81        12.89         7.66        13.02         7.89 
TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 
        0.92         0.66         0.13        12.13        11.87         0.26 
TCGA-HZ-8001 TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8636 TCGA-HZ-8638 
        0.62         3.95         0.92         0.53         0.16         2.99 
TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7646 
        0.95         6.38         1.51        11.41        49.38         4.77 
TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 
       21.90        15.35        15.65        27.98         4.04         3.62 
TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7891 TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-8127 
       43.79        15.81        16.04        15.98         0.56        17.16 
TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG 
       10.82         9.86         7.20        15.12         0.26         1.35 
TCGA-LB-A7SX TCGA-OE-A75W TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E 
        4.18         3.62         8.12        13.68        16.80        14.14 
TCGA-US-A77J 
       18.67 

  INTS7 MUTATED INTS7 WILD-TYPE 
           0.26            0.03 
  INTS7 MUTATED INTS7 WILD-TYPE 
          19.82           49.38 
  INTS7 MUTATED INTS7 WILD-TYPE 
           2.32            7.89 
[1] "0.3 - 19.8 (2.3)" "0.0 - 49.4 (7.9)"
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"INTS7 WILD-TYPE" "INTS7 WILD-TYPE"   "INTS7 MUTATED" "INTS7 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"INTS7 WILD-TYPE" "INTS7 WILD-TYPE" "INTS7 WILD-TYPE" "INTS7 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"INTS7 WILD-TYPE" "INTS7 WILD-TYPE" "INTS7 WILD-TYPE" "INTS7 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"INTS7 WILD-TYPE" "INTS7 WILD-TYPE" "INTS7 WILD-TYPE" "INTS7 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"INTS7 WILD-TYPE" "INTS7 WILD-TYPE" "INTS7 WILD-TYPE" "INTS7 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"INTS7 WILD-TYPE" "INTS7 WILD-TYPE"   "INTS7 MUTATED" "INTS7 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"INTS7 WILD-TYPE" "INTS7 WILD-TYPE" "INTS7 WILD-TYPE"   "INTS7 MUTATED" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
  "INTS7 MUTATED" "INTS7 WILD-TYPE" "INTS7 WILD-TYPE" "INTS7 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"INTS7 WILD-TYPE" "INTS7 WILD-TYPE"   "INTS7 MUTATED" "INTS7 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"INTS7 WILD-TYPE" "INTS7 WILD-TYPE" "INTS7 WILD-TYPE" "INTS7 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"INTS7 WILD-TYPE" "INTS7 WILD-TYPE" "INTS7 WILD-TYPE"   "INTS7 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"INTS7 WILD-TYPE" "INTS7 WILD-TYPE" "INTS7 WILD-TYPE" "INTS7 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"INTS7 WILD-TYPE" "INTS7 WILD-TYPE"   "INTS7 MUTATED" "INTS7 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
  "INTS7 MUTATED" "INTS7 WILD-TYPE" "INTS7 WILD-TYPE" "INTS7 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"INTS7 WILD-TYPE" "INTS7 WILD-TYPE" "INTS7 WILD-TYPE" "INTS7 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"INTS7 WILD-TYPE" "INTS7 WILD-TYPE" "INTS7 WILD-TYPE" "INTS7 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"INTS7 WILD-TYPE" "INTS7 WILD-TYPE" "INTS7 WILD-TYPE" "INTS7 WILD-TYPE" 
     TCGA-US-A77J 
"INTS7 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"INTS7 WILD-TYPE" "INTS7 WILD-TYPE"   "INTS7 MUTATED" "INTS7 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"INTS7 WILD-TYPE" "INTS7 WILD-TYPE" "INTS7 WILD-TYPE" "INTS7 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"INTS7 WILD-TYPE" "INTS7 WILD-TYPE" "INTS7 WILD-TYPE" "INTS7 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"INTS7 WILD-TYPE" "INTS7 WILD-TYPE" "INTS7 WILD-TYPE" "INTS7 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"INTS7 WILD-TYPE" "INTS7 WILD-TYPE" "INTS7 WILD-TYPE" "INTS7 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"INTS7 WILD-TYPE" "INTS7 WILD-TYPE"   "INTS7 MUTATED" "INTS7 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"INTS7 WILD-TYPE" "INTS7 WILD-TYPE" "INTS7 WILD-TYPE"   "INTS7 MUTATED" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
  "INTS7 MUTATED" "INTS7 WILD-TYPE" "INTS7 WILD-TYPE" "INTS7 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"INTS7 WILD-TYPE" "INTS7 WILD-TYPE"   "INTS7 MUTATED" "INTS7 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"INTS7 WILD-TYPE" "INTS7 WILD-TYPE" "INTS7 WILD-TYPE" "INTS7 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"INTS7 WILD-TYPE" "INTS7 WILD-TYPE" "INTS7 WILD-TYPE"   "INTS7 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"INTS7 WILD-TYPE" "INTS7 WILD-TYPE" "INTS7 WILD-TYPE" "INTS7 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"INTS7 WILD-TYPE" "INTS7 WILD-TYPE"   "INTS7 MUTATED" "INTS7 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
  "INTS7 MUTATED" "INTS7 WILD-TYPE" "INTS7 WILD-TYPE" "INTS7 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"INTS7 WILD-TYPE" "INTS7 WILD-TYPE" "INTS7 WILD-TYPE" "INTS7 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"INTS7 WILD-TYPE" "INTS7 WILD-TYPE" "INTS7 WILD-TYPE" "INTS7 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"INTS7 WILD-TYPE" "INTS7 WILD-TYPE" "INTS7 WILD-TYPE" "INTS7 WILD-TYPE" 
     TCGA-US-A77J 
"INTS7 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"INTS7 WILD-TYPE" "INTS7 WILD-TYPE"   "INTS7 MUTATED" "INTS7 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"INTS7 WILD-TYPE" "INTS7 WILD-TYPE" "INTS7 WILD-TYPE" "INTS7 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"INTS7 WILD-TYPE" "INTS7 WILD-TYPE" "INTS7 WILD-TYPE" "INTS7 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"INTS7 WILD-TYPE" "INTS7 WILD-TYPE" "INTS7 WILD-TYPE" "INTS7 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"INTS7 WILD-TYPE" "INTS7 WILD-TYPE" "INTS7 WILD-TYPE" "INTS7 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"INTS7 WILD-TYPE" "INTS7 WILD-TYPE"   "INTS7 MUTATED" "INTS7 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"INTS7 WILD-TYPE" "INTS7 WILD-TYPE" "INTS7 WILD-TYPE"   "INTS7 MUTATED" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
  "INTS7 MUTATED" "INTS7 WILD-TYPE" "INTS7 WILD-TYPE" "INTS7 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"INTS7 WILD-TYPE" "INTS7 WILD-TYPE"   "INTS7 MUTATED" "INTS7 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"INTS7 WILD-TYPE" "INTS7 WILD-TYPE" "INTS7 WILD-TYPE" "INTS7 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"INTS7 WILD-TYPE" "INTS7 WILD-TYPE" "INTS7 WILD-TYPE"   "INTS7 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"INTS7 WILD-TYPE" "INTS7 WILD-TYPE" "INTS7 WILD-TYPE" "INTS7 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"INTS7 WILD-TYPE" "INTS7 WILD-TYPE"   "INTS7 MUTATED" "INTS7 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
  "INTS7 MUTATED" "INTS7 WILD-TYPE" "INTS7 WILD-TYPE" "INTS7 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"INTS7 WILD-TYPE" "INTS7 WILD-TYPE" "INTS7 WILD-TYPE" "INTS7 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"INTS7 WILD-TYPE" "INTS7 WILD-TYPE" "INTS7 WILD-TYPE" "INTS7 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"INTS7 WILD-TYPE" "INTS7 WILD-TYPE" "INTS7 WILD-TYPE" "INTS7 WILD-TYPE" 
     TCGA-US-A77J 
"INTS7 WILD-TYPE" 
[1] "hr=" "1.6"
D317V2, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  INTS7 MUTATED          0        1         2         5         0        0
  INTS7 WILD-TYPE        1        3         9        46         2        3
D317V3, multiclass
                 vv
clus              T1+T2 T3+T4
  INTS7 MUTATED       2     6
  INTS7 WILD-TYPE     4    60
D317V4, multiclass
       clus
vv      INTS7 MUTATED INTS7 WILD-TYPE
  T1+T2             2               4
  T3+T4             6              60
D317V5, binary
                 cls
clus               0  1
  INTS7 MUTATED    3  5
  INTS7 WILD-TYPE 14 49
[1] "tbl2"
                 cls
clus              [,1] [,2]
  INTS7 MUTATED      3    5
  INTS7 WILD-TYPE   14   49
   clus
vv  INTS7 MUTATED INTS7 WILD-TYPE
  0             3              14
  1             5              49
                 vv
clus              M0 M1 MX
  INTS7 MUTATED    4  0  4
  INTS7 WILD-TYPE 35  3 26
D317V6, multiclass
    clus
vv   INTS7 MUTATED INTS7 WILD-TYPE
  M0             4              35
  M1             0               3
  MX             4              26
D317V7, binary
                 cls
clus               0  1
  INTS7 MUTATED    3  5
  INTS7 WILD-TYPE 33 31
[1] "tbl2"
                 cls
clus              [,1] [,2]
  INTS7 MUTATED      3    5
  INTS7 WILD-TYPE   33   31
        clus
vv       INTS7 MUTATED INTS7 WILD-TYPE
  FEMALE             3              33
  MALE               5              31
                 vv
clus              PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  INTS7 MUTATED                                     8
  INTS7 WILD-TYPE                                  57
                 vv
clus              PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  INTS7 MUTATED                                       0
  INTS7 WILD-TYPE                                     4
                 vv
clus              PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  INTS7 MUTATED                                                  0
  INTS7 WILD-TYPE                                                2
D317V8, multiclass
                                                  clus
vv                                                 INTS7 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                          8
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                        0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA             0
                                                  clus
vv                                                 INTS7 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                           57
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                          4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA               2
D317V9, continuous
[1] "Remove cluster labels:" "INTS7 MUTATED"         
clus
  INTS7 MUTATED INTS7 WILD-TYPE 
              1              21 
     TCGA-F2-6880      TCGA-FB-A4P5      TCGA-FB-A4P6      TCGA-FB-A5VM 
"INTS7 WILD-TYPE" "INTS7 WILD-TYPE" "INTS7 WILD-TYPE" "INTS7 WILD-TYPE" 
     TCGA-FB-A78T      TCGA-FB-A7DR      TCGA-H6-8124      TCGA-H6-A45N 
"INTS7 WILD-TYPE" "INTS7 WILD-TYPE" "INTS7 WILD-TYPE" "INTS7 WILD-TYPE" 
     TCGA-H8-A6C1      TCGA-IB-7644      TCGA-IB-7649      TCGA-IB-7885 
"INTS7 WILD-TYPE" "INTS7 WILD-TYPE" "INTS7 WILD-TYPE" "INTS7 WILD-TYPE" 
     TCGA-IB-7886      TCGA-IB-7887      TCGA-IB-7891      TCGA-IB-8126 
"INTS7 WILD-TYPE" "INTS7 WILD-TYPE" "INTS7 WILD-TYPE" "INTS7 WILD-TYPE" 
     TCGA-IB-8127      TCGA-IB-A5SS      TCGA-IB-A6UG      TCGA-LB-A7SX 
"INTS7 WILD-TYPE" "INTS7 WILD-TYPE" "INTS7 WILD-TYPE" "INTS7 WILD-TYPE" 
     TCGA-OE-A75W 
"INTS7 WILD-TYPE" 
D317V10, continuous
[1] "Remove cluster labels:" "INTS7 MUTATED"         
clus
  INTS7 MUTATED INTS7 WILD-TYPE 
              1              18 
     TCGA-FB-A4P5      TCGA-FB-A4P6      TCGA-FB-A5VM      TCGA-FB-A78T 
"INTS7 WILD-TYPE" "INTS7 WILD-TYPE" "INTS7 WILD-TYPE" "INTS7 WILD-TYPE" 
     TCGA-FB-A7DR      TCGA-H6-8124      TCGA-H8-A6C1      TCGA-IB-7644 
"INTS7 WILD-TYPE" "INTS7 WILD-TYPE" "INTS7 WILD-TYPE" "INTS7 WILD-TYPE" 
     TCGA-IB-7649      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7891 
"INTS7 WILD-TYPE" "INTS7 WILD-TYPE" "INTS7 WILD-TYPE" "INTS7 WILD-TYPE" 
     TCGA-IB-8126      TCGA-IB-8127      TCGA-IB-A5SS      TCGA-IB-A6UG 
"INTS7 WILD-TYPE" "INTS7 WILD-TYPE" "INTS7 WILD-TYPE" "INTS7 WILD-TYPE" 
     TCGA-LB-A7SX      TCGA-OE-A75W 
"INTS7 WILD-TYPE" "INTS7 WILD-TYPE" 
                 vv
clus              R0 R1 RX
  INTS7 MUTATED    6  2  0
  INTS7 WILD-TYPE 36 22  2
D317V11, multiclass
    clus
vv   INTS7 MUTATED INTS7 WILD-TYPE
  R0             6              36
  R1             2              22
  RX             0               2
D317V12, continuous

Clustering(318) Variable = SCRIB MUTATION ANALYSIS
D318V1, survival
                 sevent
clus2              0  1
  SCRIB MUTATED    1  4
  SCRIB WILD-TYPE 39 25
  SCRIB MUTATED SCRIB WILD-TYPE 
              5              64 
  SCRIB MUTATED SCRIB WILD-TYPE 
              4              25 
$`SCRIB MUTATED`
TCGA-FB-A545 TCGA-HZ-8005 TCGA-IB-7651 TCGA-IB-7890 TCGA-IB-7897 
       12.66         3.95        19.82        19.66        15.98 

$`SCRIB WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P5 TCGA-FB-A4P6 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR TCGA-FZ-5920 
        0.13        11.93         2.47         0.03         5.46         2.01 
TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7289 
       36.20        20.81        12.89         7.66        13.02         7.89 
TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 
        0.92         0.66         0.13         0.26        12.13        11.87 
TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8315 TCGA-HZ-8317 
        0.26         0.62         0.79         0.69         0.92         0.53 
TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK 
        0.16         2.99         0.76         0.95         6.38         1.51 
TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7652 
       11.41        49.38         4.77        21.90        15.35        15.65 
TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7891 
       27.98         4.04         3.62        43.79        15.81        16.04 
TCGA-IB-7893 TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ 
        3.85         0.56        17.16        10.82         9.86         7.20 
TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W TCGA-PZ-A5RE 
       15.12         0.26         1.35         4.18         3.62         8.12 
TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
       13.68        16.80        14.14        18.67 

  SCRIB MUTATED SCRIB WILD-TYPE 
           3.95            0.03 
  SCRIB MUTATED SCRIB WILD-TYPE 
          19.82           49.38 
  SCRIB MUTATED SCRIB WILD-TYPE 
          15.98            7.15 
[1] "4.0 - 19.8 (16.0)" "0.0 - 49.4 (7.2)" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"SCRIB WILD-TYPE" "SCRIB WILD-TYPE" "SCRIB WILD-TYPE" "SCRIB WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"SCRIB WILD-TYPE" "SCRIB WILD-TYPE" "SCRIB WILD-TYPE" "SCRIB WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
  "SCRIB MUTATED" "SCRIB WILD-TYPE" "SCRIB WILD-TYPE" "SCRIB WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"SCRIB WILD-TYPE" "SCRIB WILD-TYPE" "SCRIB WILD-TYPE" "SCRIB WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"SCRIB WILD-TYPE" "SCRIB WILD-TYPE" "SCRIB WILD-TYPE" "SCRIB WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"SCRIB WILD-TYPE" "SCRIB WILD-TYPE" "SCRIB WILD-TYPE" "SCRIB WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"SCRIB WILD-TYPE" "SCRIB WILD-TYPE" "SCRIB WILD-TYPE" "SCRIB WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"SCRIB WILD-TYPE"   "SCRIB MUTATED" "SCRIB WILD-TYPE" "SCRIB WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"SCRIB WILD-TYPE" "SCRIB WILD-TYPE" "SCRIB WILD-TYPE" "SCRIB WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"SCRIB WILD-TYPE" "SCRIB WILD-TYPE" "SCRIB WILD-TYPE" "SCRIB WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"SCRIB WILD-TYPE" "SCRIB WILD-TYPE" "SCRIB WILD-TYPE"   "SCRIB MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"SCRIB WILD-TYPE" "SCRIB WILD-TYPE" "SCRIB WILD-TYPE" "SCRIB WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"SCRIB WILD-TYPE" "SCRIB WILD-TYPE"   "SCRIB MUTATED" "SCRIB WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"SCRIB WILD-TYPE"   "SCRIB MUTATED" "SCRIB WILD-TYPE" "SCRIB WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"SCRIB WILD-TYPE" "SCRIB WILD-TYPE" "SCRIB WILD-TYPE" "SCRIB WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"SCRIB WILD-TYPE" "SCRIB WILD-TYPE" "SCRIB WILD-TYPE" "SCRIB WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"SCRIB WILD-TYPE" "SCRIB WILD-TYPE" "SCRIB WILD-TYPE" "SCRIB WILD-TYPE" 
     TCGA-US-A77J 
"SCRIB WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"SCRIB WILD-TYPE" "SCRIB WILD-TYPE" "SCRIB WILD-TYPE" "SCRIB WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"SCRIB WILD-TYPE" "SCRIB WILD-TYPE" "SCRIB WILD-TYPE" "SCRIB WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
  "SCRIB MUTATED" "SCRIB WILD-TYPE" "SCRIB WILD-TYPE" "SCRIB WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"SCRIB WILD-TYPE" "SCRIB WILD-TYPE" "SCRIB WILD-TYPE" "SCRIB WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"SCRIB WILD-TYPE" "SCRIB WILD-TYPE" "SCRIB WILD-TYPE" "SCRIB WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"SCRIB WILD-TYPE" "SCRIB WILD-TYPE" "SCRIB WILD-TYPE" "SCRIB WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"SCRIB WILD-TYPE" "SCRIB WILD-TYPE" "SCRIB WILD-TYPE" "SCRIB WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"SCRIB WILD-TYPE"   "SCRIB MUTATED" "SCRIB WILD-TYPE" "SCRIB WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"SCRIB WILD-TYPE" "SCRIB WILD-TYPE" "SCRIB WILD-TYPE" "SCRIB WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"SCRIB WILD-TYPE" "SCRIB WILD-TYPE" "SCRIB WILD-TYPE" "SCRIB WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"SCRIB WILD-TYPE" "SCRIB WILD-TYPE" "SCRIB WILD-TYPE"   "SCRIB MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"SCRIB WILD-TYPE" "SCRIB WILD-TYPE" "SCRIB WILD-TYPE" "SCRIB WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"SCRIB WILD-TYPE" "SCRIB WILD-TYPE"   "SCRIB MUTATED" "SCRIB WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"SCRIB WILD-TYPE"   "SCRIB MUTATED" "SCRIB WILD-TYPE" "SCRIB WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"SCRIB WILD-TYPE" "SCRIB WILD-TYPE" "SCRIB WILD-TYPE" "SCRIB WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"SCRIB WILD-TYPE" "SCRIB WILD-TYPE" "SCRIB WILD-TYPE" "SCRIB WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"SCRIB WILD-TYPE" "SCRIB WILD-TYPE" "SCRIB WILD-TYPE" "SCRIB WILD-TYPE" 
     TCGA-US-A77J 
"SCRIB WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"SCRIB WILD-TYPE" "SCRIB WILD-TYPE" "SCRIB WILD-TYPE" "SCRIB WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"SCRIB WILD-TYPE" "SCRIB WILD-TYPE" "SCRIB WILD-TYPE" "SCRIB WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
  "SCRIB MUTATED" "SCRIB WILD-TYPE" "SCRIB WILD-TYPE" "SCRIB WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"SCRIB WILD-TYPE" "SCRIB WILD-TYPE" "SCRIB WILD-TYPE" "SCRIB WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"SCRIB WILD-TYPE" "SCRIB WILD-TYPE" "SCRIB WILD-TYPE" "SCRIB WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"SCRIB WILD-TYPE" "SCRIB WILD-TYPE" "SCRIB WILD-TYPE" "SCRIB WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"SCRIB WILD-TYPE" "SCRIB WILD-TYPE" "SCRIB WILD-TYPE" "SCRIB WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"SCRIB WILD-TYPE"   "SCRIB MUTATED" "SCRIB WILD-TYPE" "SCRIB WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"SCRIB WILD-TYPE" "SCRIB WILD-TYPE" "SCRIB WILD-TYPE" "SCRIB WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"SCRIB WILD-TYPE" "SCRIB WILD-TYPE" "SCRIB WILD-TYPE" "SCRIB WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"SCRIB WILD-TYPE" "SCRIB WILD-TYPE" "SCRIB WILD-TYPE"   "SCRIB MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"SCRIB WILD-TYPE" "SCRIB WILD-TYPE" "SCRIB WILD-TYPE" "SCRIB WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"SCRIB WILD-TYPE" "SCRIB WILD-TYPE"   "SCRIB MUTATED" "SCRIB WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"SCRIB WILD-TYPE"   "SCRIB MUTATED" "SCRIB WILD-TYPE" "SCRIB WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"SCRIB WILD-TYPE" "SCRIB WILD-TYPE" "SCRIB WILD-TYPE" "SCRIB WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"SCRIB WILD-TYPE" "SCRIB WILD-TYPE" "SCRIB WILD-TYPE" "SCRIB WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"SCRIB WILD-TYPE" "SCRIB WILD-TYPE" "SCRIB WILD-TYPE" "SCRIB WILD-TYPE" 
     TCGA-US-A77J 
"SCRIB WILD-TYPE" 
[1] "hr=" "1.2"
D318V2, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  SCRIB MUTATED          0        1         0         5         0        0
  SCRIB WILD-TYPE        1        3        11        46         2        3
D318V3, multiclass
                 vv
clus              T1+T2 T3+T4
  SCRIB MUTATED       1     5
  SCRIB WILD-TYPE     5    61
D318V4, multiclass
       clus
vv      SCRIB MUTATED SCRIB WILD-TYPE
  T1+T2             1               5
  T3+T4             5              61
D318V5, binary
                 cls
clus               0  1
  SCRIB MUTATED    1  5
  SCRIB WILD-TYPE 16 49
[1] "tbl2"
                 cls
clus              [,1] [,2]
  SCRIB MUTATED      1    5
  SCRIB WILD-TYPE   16   49
   clus
vv  SCRIB MUTATED SCRIB WILD-TYPE
  0             1              16
  1             5              49
                 vv
clus              M0 M1 MX
  SCRIB MUTATED    4  0  2
  SCRIB WILD-TYPE 35  3 28
D318V6, multiclass
    clus
vv   SCRIB MUTATED SCRIB WILD-TYPE
  M0             4              35
  M1             0               3
  MX             2              28
D318V7, binary
                 cls
clus               0  1
  SCRIB MUTATED    4  2
  SCRIB WILD-TYPE 32 34
[1] "tbl2"
                 cls
clus              [,1] [,2]
  SCRIB MUTATED      4    2
  SCRIB WILD-TYPE   32   34
        clus
vv       SCRIB MUTATED SCRIB WILD-TYPE
  FEMALE             4              32
  MALE               2              34
                 vv
clus              PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  SCRIB MUTATED                                     6
  SCRIB WILD-TYPE                                  59
                 vv
clus              PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  SCRIB MUTATED                                       0
  SCRIB WILD-TYPE                                     4
                 vv
clus              PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  SCRIB MUTATED                                                  0
  SCRIB WILD-TYPE                                                2
D318V8, multiclass
                                                  clus
vv                                                 SCRIB MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                          6
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                        0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA             0
                                                  clus
vv                                                 SCRIB WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                           59
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                          4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA               2
D318V9, continuous
[1] "Remove cluster labels:" "SCRIB MUTATED"         
clus
  SCRIB MUTATED SCRIB WILD-TYPE 
              1              21 
     TCGA-F2-6880      TCGA-FB-A4P5      TCGA-FB-A4P6      TCGA-FB-A5VM 
"SCRIB WILD-TYPE" "SCRIB WILD-TYPE" "SCRIB WILD-TYPE" "SCRIB WILD-TYPE" 
     TCGA-FB-A78T      TCGA-FB-A7DR      TCGA-H6-8124      TCGA-H6-A45N 
"SCRIB WILD-TYPE" "SCRIB WILD-TYPE" "SCRIB WILD-TYPE" "SCRIB WILD-TYPE" 
     TCGA-H8-A6C1      TCGA-IB-7644      TCGA-IB-7649      TCGA-IB-7885 
"SCRIB WILD-TYPE" "SCRIB WILD-TYPE" "SCRIB WILD-TYPE" "SCRIB WILD-TYPE" 
     TCGA-IB-7886      TCGA-IB-7887      TCGA-IB-7891      TCGA-IB-8126 
"SCRIB WILD-TYPE" "SCRIB WILD-TYPE" "SCRIB WILD-TYPE" "SCRIB WILD-TYPE" 
     TCGA-IB-8127      TCGA-IB-A5SS      TCGA-IB-A6UG      TCGA-LB-A7SX 
"SCRIB WILD-TYPE" "SCRIB WILD-TYPE" "SCRIB WILD-TYPE" "SCRIB WILD-TYPE" 
     TCGA-OE-A75W 
"SCRIB WILD-TYPE" 
D318V10, continuous
[1] "Remove cluster labels:" "SCRIB MUTATED"         
clus
  SCRIB MUTATED SCRIB WILD-TYPE 
              1              18 
     TCGA-FB-A4P5      TCGA-FB-A4P6      TCGA-FB-A5VM      TCGA-FB-A78T 
"SCRIB WILD-TYPE" "SCRIB WILD-TYPE" "SCRIB WILD-TYPE" "SCRIB WILD-TYPE" 
     TCGA-FB-A7DR      TCGA-H6-8124      TCGA-H8-A6C1      TCGA-IB-7644 
"SCRIB WILD-TYPE" "SCRIB WILD-TYPE" "SCRIB WILD-TYPE" "SCRIB WILD-TYPE" 
     TCGA-IB-7649      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7891 
"SCRIB WILD-TYPE" "SCRIB WILD-TYPE" "SCRIB WILD-TYPE" "SCRIB WILD-TYPE" 
     TCGA-IB-8126      TCGA-IB-8127      TCGA-IB-A5SS      TCGA-IB-A6UG 
"SCRIB WILD-TYPE" "SCRIB WILD-TYPE" "SCRIB WILD-TYPE" "SCRIB WILD-TYPE" 
     TCGA-LB-A7SX      TCGA-OE-A75W 
"SCRIB WILD-TYPE" "SCRIB WILD-TYPE" 
                 vv
clus              R0 R1 RX
  SCRIB MUTATED    4  1  0
  SCRIB WILD-TYPE 38 23  2
D318V11, multiclass
    clus
vv   SCRIB MUTATED SCRIB WILD-TYPE
  R0             4              38
  R1             1              23
  RX             0               2
D318V12, continuous

Clustering(319) Variable = CYP11B2 MUTATION ANALYSIS
D319V1, survival
                   sevent
clus2                0  1
  CYP11B2 MUTATED    1  3
  CYP11B2 WILD-TYPE 39 26
  CYP11B2 MUTATED CYP11B2 WILD-TYPE 
                4                65 
  CYP11B2 MUTATED CYP11B2 WILD-TYPE 
                3                26 
$`CYP11B2 MUTATED`
TCGA-HZ-7922 TCGA-HZ-8005 TCGA-IB-7888 TCGA-US-A77J 
        0.13         3.95        43.79        18.67 

$`CYP11B2 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P5 TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR 
        0.13        11.93        12.66         2.47         0.03         5.46 
TCGA-FZ-5920 TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 
        2.01        36.20        20.81        12.89         7.66        13.02 
TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 
        7.89         0.92         0.66         0.26        12.13        11.87 
TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8315 TCGA-HZ-8317 
        0.26         0.62         0.79         0.69         0.92         0.53 
TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK 
        0.16         2.99         0.76         0.95         6.38         1.51 
TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7651 
       11.41        49.38         4.77        21.90        15.35        19.82 
TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7889 TCGA-IB-7890 
       15.65        27.98         4.04         3.62        15.81        19.66 
TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO 
       16.04         3.85        15.98         0.56        17.16        10.82 
TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX 
        9.86         7.20        15.12         0.26         1.35         4.18 
TCGA-OE-A75W TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E 
        3.62         8.12        13.68        16.80        14.14 

  CYP11B2 MUTATED CYP11B2 WILD-TYPE 
             0.13              0.03 
  CYP11B2 MUTATED CYP11B2 WILD-TYPE 
            43.79             49.38 
  CYP11B2 MUTATED CYP11B2 WILD-TYPE 
            11.31              7.66 
[1] "0.1 - 43.8 (11.3)" "0.0 - 49.4 (7.7)" 
       TCGA-F2-6879        TCGA-F2-6880        TCGA-F2-7273        TCGA-F2-7276 
"CYP11B2 WILD-TYPE" "CYP11B2 WILD-TYPE" "CYP11B2 WILD-TYPE" "CYP11B2 WILD-TYPE" 
       TCGA-F2-A44G        TCGA-F2-A44H        TCGA-FB-A4P5        TCGA-FB-A4P6 
"CYP11B2 WILD-TYPE" "CYP11B2 WILD-TYPE" "CYP11B2 WILD-TYPE" "CYP11B2 WILD-TYPE" 
       TCGA-FB-A545        TCGA-FB-A5VM        TCGA-FB-A78T        TCGA-FB-A7DR 
"CYP11B2 WILD-TYPE" "CYP11B2 WILD-TYPE" "CYP11B2 WILD-TYPE" "CYP11B2 WILD-TYPE" 
       TCGA-FZ-5920        TCGA-FZ-5922        TCGA-FZ-5923        TCGA-H6-8124 
"CYP11B2 WILD-TYPE" "CYP11B2 WILD-TYPE" "CYP11B2 WILD-TYPE" "CYP11B2 WILD-TYPE" 
       TCGA-H6-A45N        TCGA-H8-A6C1        TCGA-HZ-7289        TCGA-HZ-7918 
"CYP11B2 WILD-TYPE" "CYP11B2 WILD-TYPE" "CYP11B2 WILD-TYPE" "CYP11B2 WILD-TYPE" 
       TCGA-HZ-7919        TCGA-HZ-7922        TCGA-HZ-7923        TCGA-HZ-7924 
"CYP11B2 WILD-TYPE"   "CYP11B2 MUTATED" "CYP11B2 WILD-TYPE" "CYP11B2 WILD-TYPE" 
       TCGA-HZ-7925        TCGA-HZ-7926        TCGA-HZ-8001        TCGA-HZ-8002 
"CYP11B2 WILD-TYPE" "CYP11B2 WILD-TYPE" "CYP11B2 WILD-TYPE" "CYP11B2 WILD-TYPE" 
       TCGA-HZ-8003        TCGA-HZ-8005        TCGA-HZ-8315        TCGA-HZ-8317 
"CYP11B2 WILD-TYPE"   "CYP11B2 MUTATED" "CYP11B2 WILD-TYPE" "CYP11B2 WILD-TYPE" 
       TCGA-HZ-8636        TCGA-HZ-8638        TCGA-HZ-A49G        TCGA-HZ-A49H 
"CYP11B2 WILD-TYPE" "CYP11B2 WILD-TYPE" "CYP11B2 WILD-TYPE" "CYP11B2 WILD-TYPE" 
       TCGA-HZ-A4BH        TCGA-HZ-A4BK        TCGA-IB-7644        TCGA-IB-7645 
"CYP11B2 WILD-TYPE" "CYP11B2 WILD-TYPE" "CYP11B2 WILD-TYPE" "CYP11B2 WILD-TYPE" 
       TCGA-IB-7646        TCGA-IB-7647        TCGA-IB-7649        TCGA-IB-7651 
"CYP11B2 WILD-TYPE" "CYP11B2 WILD-TYPE" "CYP11B2 WILD-TYPE" "CYP11B2 WILD-TYPE" 
       TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-7886        TCGA-IB-7887 
"CYP11B2 WILD-TYPE" "CYP11B2 WILD-TYPE" "CYP11B2 WILD-TYPE" "CYP11B2 WILD-TYPE" 
       TCGA-IB-7888        TCGA-IB-7889        TCGA-IB-7890        TCGA-IB-7891 
  "CYP11B2 MUTATED" "CYP11B2 WILD-TYPE" "CYP11B2 WILD-TYPE" "CYP11B2 WILD-TYPE" 
       TCGA-IB-7893        TCGA-IB-7897        TCGA-IB-8126        TCGA-IB-8127 
"CYP11B2 WILD-TYPE" "CYP11B2 WILD-TYPE" "CYP11B2 WILD-TYPE" "CYP11B2 WILD-TYPE" 
       TCGA-IB-A5SO        TCGA-IB-A5SP        TCGA-IB-A5SQ        TCGA-IB-A5SS 
"CYP11B2 WILD-TYPE" "CYP11B2 WILD-TYPE" "CYP11B2 WILD-TYPE" "CYP11B2 WILD-TYPE" 
       TCGA-IB-A5ST        TCGA-IB-A6UG        TCGA-LB-A7SX        TCGA-OE-A75W 
"CYP11B2 WILD-TYPE" "CYP11B2 WILD-TYPE" "CYP11B2 WILD-TYPE" "CYP11B2 WILD-TYPE" 
       TCGA-PZ-A5RE        TCGA-Q3-A5QY        TCGA-US-A779        TCGA-US-A77E 
"CYP11B2 WILD-TYPE" "CYP11B2 WILD-TYPE" "CYP11B2 WILD-TYPE" "CYP11B2 WILD-TYPE" 
       TCGA-US-A77J 
  "CYP11B2 MUTATED" 
       TCGA-F2-6879        TCGA-F2-6880        TCGA-F2-7273        TCGA-F2-7276 
"CYP11B2 WILD-TYPE" "CYP11B2 WILD-TYPE" "CYP11B2 WILD-TYPE" "CYP11B2 WILD-TYPE" 
       TCGA-F2-A44G        TCGA-F2-A44H        TCGA-FB-A4P5        TCGA-FB-A4P6 
"CYP11B2 WILD-TYPE" "CYP11B2 WILD-TYPE" "CYP11B2 WILD-TYPE" "CYP11B2 WILD-TYPE" 
       TCGA-FB-A545        TCGA-FB-A5VM        TCGA-FB-A78T        TCGA-FB-A7DR 
"CYP11B2 WILD-TYPE" "CYP11B2 WILD-TYPE" "CYP11B2 WILD-TYPE" "CYP11B2 WILD-TYPE" 
       TCGA-FZ-5920        TCGA-FZ-5922        TCGA-FZ-5923        TCGA-H6-8124 
"CYP11B2 WILD-TYPE" "CYP11B2 WILD-TYPE" "CYP11B2 WILD-TYPE" "CYP11B2 WILD-TYPE" 
       TCGA-H6-A45N        TCGA-H8-A6C1        TCGA-HZ-7289        TCGA-HZ-7918 
"CYP11B2 WILD-TYPE" "CYP11B2 WILD-TYPE" "CYP11B2 WILD-TYPE" "CYP11B2 WILD-TYPE" 
       TCGA-HZ-7919        TCGA-HZ-7922        TCGA-HZ-7923        TCGA-HZ-7924 
"CYP11B2 WILD-TYPE"   "CYP11B2 MUTATED" "CYP11B2 WILD-TYPE" "CYP11B2 WILD-TYPE" 
       TCGA-HZ-7925        TCGA-HZ-7926        TCGA-HZ-8001        TCGA-HZ-8002 
"CYP11B2 WILD-TYPE" "CYP11B2 WILD-TYPE" "CYP11B2 WILD-TYPE" "CYP11B2 WILD-TYPE" 
       TCGA-HZ-8003        TCGA-HZ-8005        TCGA-HZ-8315        TCGA-HZ-8317 
"CYP11B2 WILD-TYPE"   "CYP11B2 MUTATED" "CYP11B2 WILD-TYPE" "CYP11B2 WILD-TYPE" 
       TCGA-HZ-8636        TCGA-HZ-8638        TCGA-HZ-A49G        TCGA-HZ-A49H 
"CYP11B2 WILD-TYPE" "CYP11B2 WILD-TYPE" "CYP11B2 WILD-TYPE" "CYP11B2 WILD-TYPE" 
       TCGA-HZ-A4BH        TCGA-HZ-A4BK        TCGA-IB-7644        TCGA-IB-7645 
"CYP11B2 WILD-TYPE" "CYP11B2 WILD-TYPE" "CYP11B2 WILD-TYPE" "CYP11B2 WILD-TYPE" 
       TCGA-IB-7646        TCGA-IB-7647        TCGA-IB-7649        TCGA-IB-7651 
"CYP11B2 WILD-TYPE" "CYP11B2 WILD-TYPE" "CYP11B2 WILD-TYPE" "CYP11B2 WILD-TYPE" 
       TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-7886        TCGA-IB-7887 
"CYP11B2 WILD-TYPE" "CYP11B2 WILD-TYPE" "CYP11B2 WILD-TYPE" "CYP11B2 WILD-TYPE" 
       TCGA-IB-7888        TCGA-IB-7889        TCGA-IB-7890        TCGA-IB-7891 
  "CYP11B2 MUTATED" "CYP11B2 WILD-TYPE" "CYP11B2 WILD-TYPE" "CYP11B2 WILD-TYPE" 
       TCGA-IB-7893        TCGA-IB-7897        TCGA-IB-8126        TCGA-IB-8127 
"CYP11B2 WILD-TYPE" "CYP11B2 WILD-TYPE" "CYP11B2 WILD-TYPE" "CYP11B2 WILD-TYPE" 
       TCGA-IB-A5SO        TCGA-IB-A5SP        TCGA-IB-A5SQ        TCGA-IB-A5SS 
"CYP11B2 WILD-TYPE" "CYP11B2 WILD-TYPE" "CYP11B2 WILD-TYPE" "CYP11B2 WILD-TYPE" 
       TCGA-IB-A5ST        TCGA-IB-A6UG        TCGA-LB-A7SX        TCGA-OE-A75W 
"CYP11B2 WILD-TYPE" "CYP11B2 WILD-TYPE" "CYP11B2 WILD-TYPE" "CYP11B2 WILD-TYPE" 
       TCGA-PZ-A5RE        TCGA-Q3-A5QY        TCGA-US-A779        TCGA-US-A77E 
"CYP11B2 WILD-TYPE" "CYP11B2 WILD-TYPE" "CYP11B2 WILD-TYPE" "CYP11B2 WILD-TYPE" 
       TCGA-US-A77J 
  "CYP11B2 MUTATED" 
       TCGA-F2-6879        TCGA-F2-6880        TCGA-F2-7273        TCGA-F2-7276 
"CYP11B2 WILD-TYPE" "CYP11B2 WILD-TYPE" "CYP11B2 WILD-TYPE" "CYP11B2 WILD-TYPE" 
       TCGA-F2-A44G        TCGA-F2-A44H        TCGA-FB-A4P5        TCGA-FB-A4P6 
"CYP11B2 WILD-TYPE" "CYP11B2 WILD-TYPE" "CYP11B2 WILD-TYPE" "CYP11B2 WILD-TYPE" 
       TCGA-FB-A545        TCGA-FB-A5VM        TCGA-FB-A78T        TCGA-FB-A7DR 
"CYP11B2 WILD-TYPE" "CYP11B2 WILD-TYPE" "CYP11B2 WILD-TYPE" "CYP11B2 WILD-TYPE" 
       TCGA-FZ-5920        TCGA-FZ-5922        TCGA-FZ-5923        TCGA-H6-8124 
"CYP11B2 WILD-TYPE" "CYP11B2 WILD-TYPE" "CYP11B2 WILD-TYPE" "CYP11B2 WILD-TYPE" 
       TCGA-H6-A45N        TCGA-H8-A6C1        TCGA-HZ-7289        TCGA-HZ-7918 
"CYP11B2 WILD-TYPE" "CYP11B2 WILD-TYPE" "CYP11B2 WILD-TYPE" "CYP11B2 WILD-TYPE" 
       TCGA-HZ-7919        TCGA-HZ-7922        TCGA-HZ-7923        TCGA-HZ-7924 
"CYP11B2 WILD-TYPE"   "CYP11B2 MUTATED" "CYP11B2 WILD-TYPE" "CYP11B2 WILD-TYPE" 
       TCGA-HZ-7925        TCGA-HZ-7926        TCGA-HZ-8001        TCGA-HZ-8002 
"CYP11B2 WILD-TYPE" "CYP11B2 WILD-TYPE" "CYP11B2 WILD-TYPE" "CYP11B2 WILD-TYPE" 
       TCGA-HZ-8003        TCGA-HZ-8005        TCGA-HZ-8315        TCGA-HZ-8317 
"CYP11B2 WILD-TYPE"   "CYP11B2 MUTATED" "CYP11B2 WILD-TYPE" "CYP11B2 WILD-TYPE" 
       TCGA-HZ-8636        TCGA-HZ-8638        TCGA-HZ-A49G        TCGA-HZ-A49H 
"CYP11B2 WILD-TYPE" "CYP11B2 WILD-TYPE" "CYP11B2 WILD-TYPE" "CYP11B2 WILD-TYPE" 
       TCGA-HZ-A4BH        TCGA-HZ-A4BK        TCGA-IB-7644        TCGA-IB-7645 
"CYP11B2 WILD-TYPE" "CYP11B2 WILD-TYPE" "CYP11B2 WILD-TYPE" "CYP11B2 WILD-TYPE" 
       TCGA-IB-7646        TCGA-IB-7647        TCGA-IB-7649        TCGA-IB-7651 
"CYP11B2 WILD-TYPE" "CYP11B2 WILD-TYPE" "CYP11B2 WILD-TYPE" "CYP11B2 WILD-TYPE" 
       TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-7886        TCGA-IB-7887 
"CYP11B2 WILD-TYPE" "CYP11B2 WILD-TYPE" "CYP11B2 WILD-TYPE" "CYP11B2 WILD-TYPE" 
       TCGA-IB-7888        TCGA-IB-7889        TCGA-IB-7890        TCGA-IB-7891 
  "CYP11B2 MUTATED" "CYP11B2 WILD-TYPE" "CYP11B2 WILD-TYPE" "CYP11B2 WILD-TYPE" 
       TCGA-IB-7893        TCGA-IB-7897        TCGA-IB-8126        TCGA-IB-8127 
"CYP11B2 WILD-TYPE" "CYP11B2 WILD-TYPE" "CYP11B2 WILD-TYPE" "CYP11B2 WILD-TYPE" 
       TCGA-IB-A5SO        TCGA-IB-A5SP        TCGA-IB-A5SQ        TCGA-IB-A5SS 
"CYP11B2 WILD-TYPE" "CYP11B2 WILD-TYPE" "CYP11B2 WILD-TYPE" "CYP11B2 WILD-TYPE" 
       TCGA-IB-A5ST        TCGA-IB-A6UG        TCGA-LB-A7SX        TCGA-OE-A75W 
"CYP11B2 WILD-TYPE" "CYP11B2 WILD-TYPE" "CYP11B2 WILD-TYPE" "CYP11B2 WILD-TYPE" 
       TCGA-PZ-A5RE        TCGA-Q3-A5QY        TCGA-US-A779        TCGA-US-A77E 
"CYP11B2 WILD-TYPE" "CYP11B2 WILD-TYPE" "CYP11B2 WILD-TYPE" "CYP11B2 WILD-TYPE" 
       TCGA-US-A77J 
  "CYP11B2 MUTATED" 
[1] "hr=" "1.1"
D319V2, continuous
                   vv
clus                STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  CYP11B2 MUTATED          0        0         1         3         0        0
  CYP11B2 WILD-TYPE        1        4        10        48         2        3
D319V3, multiclass
                   vv
clus                T1+T2 T3+T4
  CYP11B2 MUTATED       0     4
  CYP11B2 WILD-TYPE     6    62
D319V4, multiclass
       clus
vv      CYP11B2 MUTATED CYP11B2 WILD-TYPE
  T1+T2               0                 6
  T3+T4               4                62
D319V5, binary
                   cls
clus                 0  1
  CYP11B2 MUTATED    1  3
  CYP11B2 WILD-TYPE 16 51
[1] "tbl2"
                   cls
clus                [,1] [,2]
  CYP11B2 MUTATED      1    3
  CYP11B2 WILD-TYPE   16   51
   clus
vv  CYP11B2 MUTATED CYP11B2 WILD-TYPE
  0               1                16
  1               3                51
                   vv
clus                M0 M1 MX
  CYP11B2 MUTATED    1  0  3
  CYP11B2 WILD-TYPE 38  3 27
D319V6, multiclass
    clus
vv   CYP11B2 MUTATED CYP11B2 WILD-TYPE
  M0               1                38
  M1               0                 3
  MX               3                27
D319V7, binary
                   cls
clus                 0  1
  CYP11B2 MUTATED    3  1
  CYP11B2 WILD-TYPE 33 35
[1] "tbl2"
                   cls
clus                [,1] [,2]
  CYP11B2 MUTATED      3    1
  CYP11B2 WILD-TYPE   33   35
        clus
vv       CYP11B2 MUTATED CYP11B2 WILD-TYPE
  FEMALE               3                33
  MALE                 1                35
                   vv
clus                PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  CYP11B2 MUTATED                                     4
  CYP11B2 WILD-TYPE                                  61
                   vv
clus                PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  CYP11B2 MUTATED                                       0
  CYP11B2 WILD-TYPE                                     4
                   vv
clus                PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  CYP11B2 MUTATED                                                  0
  CYP11B2 WILD-TYPE                                                2
D319V8, multiclass
                                                  clus
vv                                                 CYP11B2 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                            4
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                          0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA               0
                                                  clus
vv                                                 CYP11B2 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                             61
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                            4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                 2
D319V9, continuous
D319V10, continuous
                   vv
clus                R0 R1 RX
  CYP11B2 MUTATED    3  1  0
  CYP11B2 WILD-TYPE 39 23  2
D319V11, multiclass
    clus
vv   CYP11B2 MUTATED CYP11B2 WILD-TYPE
  R0               3                39
  R1               1                23
  RX               0                 2
D319V12, continuous

Clustering(320) Variable = BCL3 MUTATION ANALYSIS
D320V1, survival
                sevent
clus2             0  1
  BCL3 MUTATED    2  1
  BCL3 WILD-TYPE 38 28
  BCL3 MUTATED BCL3 WILD-TYPE 
             3             66 
  BCL3 MUTATED BCL3 WILD-TYPE 
             1             28 
$`BCL3 MUTATED`
TCGA-H6-8124 TCGA-IB-7651 TCGA-PZ-A5RE 
       12.89        19.82         8.12 

$`BCL3 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P5 TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR 
        0.13        11.93        12.66         2.47         0.03         5.46 
TCGA-FZ-5920 TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7289 
        2.01        36.20        20.81         7.66        13.02         7.89 
TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 
        0.92         0.66         0.13         0.26        12.13        11.87 
TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 
        0.26         0.62         0.79         0.69         3.95         0.92 
TCGA-HZ-8317 TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH 
        0.53         0.16         2.99         0.76         0.95         6.38 
TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 
        1.51        11.41        49.38         4.77        21.90        15.35 
TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 
       15.65        27.98         4.04         3.62        43.79        15.81 
TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-8127 
       19.66        16.04         3.85        15.98         0.56        17.16 
TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG 
       10.82         9.86         7.20        15.12         0.26         1.35 
TCGA-LB-A7SX TCGA-OE-A75W TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
        4.18         3.62        13.68        16.80        14.14        18.67 

  BCL3 MUTATED BCL3 WILD-TYPE 
          8.12           0.03 
  BCL3 MUTATED BCL3 WILD-TYPE 
         19.82          49.38 
  BCL3 MUTATED BCL3 WILD-TYPE 
         12.89           7.15 
[1] "8.1 - 19.8 (12.9)" "0.0 - 49.4 (7.2)" 
    TCGA-F2-6879     TCGA-F2-6880     TCGA-F2-7273     TCGA-F2-7276 
"BCL3 WILD-TYPE" "BCL3 WILD-TYPE" "BCL3 WILD-TYPE" "BCL3 WILD-TYPE" 
    TCGA-F2-A44G     TCGA-F2-A44H     TCGA-FB-A4P5     TCGA-FB-A4P6 
"BCL3 WILD-TYPE" "BCL3 WILD-TYPE" "BCL3 WILD-TYPE" "BCL3 WILD-TYPE" 
    TCGA-FB-A545     TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-FB-A7DR 
"BCL3 WILD-TYPE" "BCL3 WILD-TYPE" "BCL3 WILD-TYPE" "BCL3 WILD-TYPE" 
    TCGA-FZ-5920     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-H6-8124 
"BCL3 WILD-TYPE" "BCL3 WILD-TYPE" "BCL3 WILD-TYPE"   "BCL3 MUTATED" 
    TCGA-H6-A45N     TCGA-H8-A6C1     TCGA-HZ-7289     TCGA-HZ-7918 
"BCL3 WILD-TYPE" "BCL3 WILD-TYPE" "BCL3 WILD-TYPE" "BCL3 WILD-TYPE" 
    TCGA-HZ-7919     TCGA-HZ-7922     TCGA-HZ-7923     TCGA-HZ-7924 
"BCL3 WILD-TYPE" "BCL3 WILD-TYPE" "BCL3 WILD-TYPE" "BCL3 WILD-TYPE" 
    TCGA-HZ-7925     TCGA-HZ-7926     TCGA-HZ-8001     TCGA-HZ-8002 
"BCL3 WILD-TYPE" "BCL3 WILD-TYPE" "BCL3 WILD-TYPE" "BCL3 WILD-TYPE" 
    TCGA-HZ-8003     TCGA-HZ-8005     TCGA-HZ-8315     TCGA-HZ-8317 
"BCL3 WILD-TYPE" "BCL3 WILD-TYPE" "BCL3 WILD-TYPE" "BCL3 WILD-TYPE" 
    TCGA-HZ-8636     TCGA-HZ-8638     TCGA-HZ-A49G     TCGA-HZ-A49H 
"BCL3 WILD-TYPE" "BCL3 WILD-TYPE" "BCL3 WILD-TYPE" "BCL3 WILD-TYPE" 
    TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-IB-7644     TCGA-IB-7645 
"BCL3 WILD-TYPE" "BCL3 WILD-TYPE" "BCL3 WILD-TYPE" "BCL3 WILD-TYPE" 
    TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7651 
"BCL3 WILD-TYPE" "BCL3 WILD-TYPE" "BCL3 WILD-TYPE"   "BCL3 MUTATED" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887 
"BCL3 WILD-TYPE" "BCL3 WILD-TYPE" "BCL3 WILD-TYPE" "BCL3 WILD-TYPE" 
    TCGA-IB-7888     TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891 
"BCL3 WILD-TYPE" "BCL3 WILD-TYPE" "BCL3 WILD-TYPE" "BCL3 WILD-TYPE" 
    TCGA-IB-7893     TCGA-IB-7897     TCGA-IB-8126     TCGA-IB-8127 
"BCL3 WILD-TYPE" "BCL3 WILD-TYPE" "BCL3 WILD-TYPE" "BCL3 WILD-TYPE" 
    TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS 
"BCL3 WILD-TYPE" "BCL3 WILD-TYPE" "BCL3 WILD-TYPE" "BCL3 WILD-TYPE" 
    TCGA-IB-A5ST     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
"BCL3 WILD-TYPE" "BCL3 WILD-TYPE" "BCL3 WILD-TYPE" "BCL3 WILD-TYPE" 
    TCGA-PZ-A5RE     TCGA-Q3-A5QY     TCGA-US-A779     TCGA-US-A77E 
  "BCL3 MUTATED" "BCL3 WILD-TYPE" "BCL3 WILD-TYPE" "BCL3 WILD-TYPE" 
    TCGA-US-A77J 
"BCL3 WILD-TYPE" 
    TCGA-F2-6879     TCGA-F2-6880     TCGA-F2-7273     TCGA-F2-7276 
"BCL3 WILD-TYPE" "BCL3 WILD-TYPE" "BCL3 WILD-TYPE" "BCL3 WILD-TYPE" 
    TCGA-F2-A44G     TCGA-F2-A44H     TCGA-FB-A4P5     TCGA-FB-A4P6 
"BCL3 WILD-TYPE" "BCL3 WILD-TYPE" "BCL3 WILD-TYPE" "BCL3 WILD-TYPE" 
    TCGA-FB-A545     TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-FB-A7DR 
"BCL3 WILD-TYPE" "BCL3 WILD-TYPE" "BCL3 WILD-TYPE" "BCL3 WILD-TYPE" 
    TCGA-FZ-5920     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-H6-8124 
"BCL3 WILD-TYPE" "BCL3 WILD-TYPE" "BCL3 WILD-TYPE"   "BCL3 MUTATED" 
    TCGA-H6-A45N     TCGA-H8-A6C1     TCGA-HZ-7289     TCGA-HZ-7918 
"BCL3 WILD-TYPE" "BCL3 WILD-TYPE" "BCL3 WILD-TYPE" "BCL3 WILD-TYPE" 
    TCGA-HZ-7919     TCGA-HZ-7922     TCGA-HZ-7923     TCGA-HZ-7924 
"BCL3 WILD-TYPE" "BCL3 WILD-TYPE" "BCL3 WILD-TYPE" "BCL3 WILD-TYPE" 
    TCGA-HZ-7925     TCGA-HZ-7926     TCGA-HZ-8001     TCGA-HZ-8002 
"BCL3 WILD-TYPE" "BCL3 WILD-TYPE" "BCL3 WILD-TYPE" "BCL3 WILD-TYPE" 
    TCGA-HZ-8003     TCGA-HZ-8005     TCGA-HZ-8315     TCGA-HZ-8317 
"BCL3 WILD-TYPE" "BCL3 WILD-TYPE" "BCL3 WILD-TYPE" "BCL3 WILD-TYPE" 
    TCGA-HZ-8636     TCGA-HZ-8638     TCGA-HZ-A49G     TCGA-HZ-A49H 
"BCL3 WILD-TYPE" "BCL3 WILD-TYPE" "BCL3 WILD-TYPE" "BCL3 WILD-TYPE" 
    TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-IB-7644     TCGA-IB-7645 
"BCL3 WILD-TYPE" "BCL3 WILD-TYPE" "BCL3 WILD-TYPE" "BCL3 WILD-TYPE" 
    TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7651 
"BCL3 WILD-TYPE" "BCL3 WILD-TYPE" "BCL3 WILD-TYPE"   "BCL3 MUTATED" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887 
"BCL3 WILD-TYPE" "BCL3 WILD-TYPE" "BCL3 WILD-TYPE" "BCL3 WILD-TYPE" 
    TCGA-IB-7888     TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891 
"BCL3 WILD-TYPE" "BCL3 WILD-TYPE" "BCL3 WILD-TYPE" "BCL3 WILD-TYPE" 
    TCGA-IB-7893     TCGA-IB-7897     TCGA-IB-8126     TCGA-IB-8127 
"BCL3 WILD-TYPE" "BCL3 WILD-TYPE" "BCL3 WILD-TYPE" "BCL3 WILD-TYPE" 
    TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS 
"BCL3 WILD-TYPE" "BCL3 WILD-TYPE" "BCL3 WILD-TYPE" "BCL3 WILD-TYPE" 
    TCGA-IB-A5ST     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
"BCL3 WILD-TYPE" "BCL3 WILD-TYPE" "BCL3 WILD-TYPE" "BCL3 WILD-TYPE" 
    TCGA-PZ-A5RE     TCGA-Q3-A5QY     TCGA-US-A779     TCGA-US-A77E 
  "BCL3 MUTATED" "BCL3 WILD-TYPE" "BCL3 WILD-TYPE" "BCL3 WILD-TYPE" 
    TCGA-US-A77J 
"BCL3 WILD-TYPE" 
    TCGA-F2-6879     TCGA-F2-6880     TCGA-F2-7273     TCGA-F2-7276 
"BCL3 WILD-TYPE" "BCL3 WILD-TYPE" "BCL3 WILD-TYPE" "BCL3 WILD-TYPE" 
    TCGA-F2-A44G     TCGA-F2-A44H     TCGA-FB-A4P5     TCGA-FB-A4P6 
"BCL3 WILD-TYPE" "BCL3 WILD-TYPE" "BCL3 WILD-TYPE" "BCL3 WILD-TYPE" 
    TCGA-FB-A545     TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-FB-A7DR 
"BCL3 WILD-TYPE" "BCL3 WILD-TYPE" "BCL3 WILD-TYPE" "BCL3 WILD-TYPE" 
    TCGA-FZ-5920     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-H6-8124 
"BCL3 WILD-TYPE" "BCL3 WILD-TYPE" "BCL3 WILD-TYPE"   "BCL3 MUTATED" 
    TCGA-H6-A45N     TCGA-H8-A6C1     TCGA-HZ-7289     TCGA-HZ-7918 
"BCL3 WILD-TYPE" "BCL3 WILD-TYPE" "BCL3 WILD-TYPE" "BCL3 WILD-TYPE" 
    TCGA-HZ-7919     TCGA-HZ-7922     TCGA-HZ-7923     TCGA-HZ-7924 
"BCL3 WILD-TYPE" "BCL3 WILD-TYPE" "BCL3 WILD-TYPE" "BCL3 WILD-TYPE" 
    TCGA-HZ-7925     TCGA-HZ-7926     TCGA-HZ-8001     TCGA-HZ-8002 
"BCL3 WILD-TYPE" "BCL3 WILD-TYPE" "BCL3 WILD-TYPE" "BCL3 WILD-TYPE" 
    TCGA-HZ-8003     TCGA-HZ-8005     TCGA-HZ-8315     TCGA-HZ-8317 
"BCL3 WILD-TYPE" "BCL3 WILD-TYPE" "BCL3 WILD-TYPE" "BCL3 WILD-TYPE" 
    TCGA-HZ-8636     TCGA-HZ-8638     TCGA-HZ-A49G     TCGA-HZ-A49H 
"BCL3 WILD-TYPE" "BCL3 WILD-TYPE" "BCL3 WILD-TYPE" "BCL3 WILD-TYPE" 
    TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-IB-7644     TCGA-IB-7645 
"BCL3 WILD-TYPE" "BCL3 WILD-TYPE" "BCL3 WILD-TYPE" "BCL3 WILD-TYPE" 
    TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7651 
"BCL3 WILD-TYPE" "BCL3 WILD-TYPE" "BCL3 WILD-TYPE"   "BCL3 MUTATED" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887 
"BCL3 WILD-TYPE" "BCL3 WILD-TYPE" "BCL3 WILD-TYPE" "BCL3 WILD-TYPE" 
    TCGA-IB-7888     TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891 
"BCL3 WILD-TYPE" "BCL3 WILD-TYPE" "BCL3 WILD-TYPE" "BCL3 WILD-TYPE" 
    TCGA-IB-7893     TCGA-IB-7897     TCGA-IB-8126     TCGA-IB-8127 
"BCL3 WILD-TYPE" "BCL3 WILD-TYPE" "BCL3 WILD-TYPE" "BCL3 WILD-TYPE" 
    TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS 
"BCL3 WILD-TYPE" "BCL3 WILD-TYPE" "BCL3 WILD-TYPE" "BCL3 WILD-TYPE" 
    TCGA-IB-A5ST     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
"BCL3 WILD-TYPE" "BCL3 WILD-TYPE" "BCL3 WILD-TYPE" "BCL3 WILD-TYPE" 
    TCGA-PZ-A5RE     TCGA-Q3-A5QY     TCGA-US-A779     TCGA-US-A77E 
  "BCL3 MUTATED" "BCL3 WILD-TYPE" "BCL3 WILD-TYPE" "BCL3 WILD-TYPE" 
    TCGA-US-A77J 
"BCL3 WILD-TYPE" 
[1] "hr=" "1.9"
D320V2, continuous
                vv
clus             STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  BCL3 MUTATED          0        0         0         3         0        0
  BCL3 WILD-TYPE        1        4        11        48         2        3
D320V3, multiclass
                vv
clus             T1+T2 T3+T4
  BCL3 MUTATED       0     3
  BCL3 WILD-TYPE     6    63
D320V4, multiclass
       clus
vv      BCL3 MUTATED BCL3 WILD-TYPE
  T1+T2            0              6
  T3+T4            3             63
D320V5, binary
                cls
clus              0  1
  BCL3 MUTATED    0  3
  BCL3 WILD-TYPE 17 51
[1] "tbl2"
                cls
clus             [,1] [,2]
  BCL3 MUTATED      0    3
  BCL3 WILD-TYPE   17   51
   clus
vv  BCL3 MUTATED BCL3 WILD-TYPE
  0            0             17
  1            3             51
                vv
clus             M0 M1 MX
  BCL3 MUTATED    2  0  1
  BCL3 WILD-TYPE 37  3 29
D320V6, multiclass
    clus
vv   BCL3 MUTATED BCL3 WILD-TYPE
  M0            2             37
  M1            0              3
  MX            1             29
D320V7, binary
                cls
clus              0  1
  BCL3 MUTATED    3  0
  BCL3 WILD-TYPE 33 36
[1] "tbl2"
                cls
clus             [,1] [,2]
  BCL3 MUTATED      3    0
  BCL3 WILD-TYPE   33   36
        clus
vv       BCL3 MUTATED BCL3 WILD-TYPE
  FEMALE            3             33
  MALE              0             36
                vv
clus             PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  BCL3 MUTATED                                     3
  BCL3 WILD-TYPE                                  62
                vv
clus             PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  BCL3 MUTATED                                       0
  BCL3 WILD-TYPE                                     4
                vv
clus             PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  BCL3 MUTATED                                                  0
  BCL3 WILD-TYPE                                                2
D320V8, multiclass
                                                  clus
vv                                                 BCL3 MUTATED BCL3 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                         3             62
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                       0              4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA            0              2
D320V9, continuous
[1] "Remove cluster labels:" "BCL3 MUTATED"          
clus
  BCL3 MUTATED BCL3 WILD-TYPE 
             2             20 
    TCGA-F2-6880     TCGA-FB-A4P5     TCGA-FB-A4P6     TCGA-FB-A5VM 
"BCL3 WILD-TYPE" "BCL3 WILD-TYPE" "BCL3 WILD-TYPE" "BCL3 WILD-TYPE" 
    TCGA-FB-A78T     TCGA-FB-A7DR     TCGA-H6-A45N     TCGA-H8-A6C1 
"BCL3 WILD-TYPE" "BCL3 WILD-TYPE" "BCL3 WILD-TYPE" "BCL3 WILD-TYPE" 
    TCGA-IB-7644     TCGA-IB-7649     TCGA-IB-7885     TCGA-IB-7886 
"BCL3 WILD-TYPE" "BCL3 WILD-TYPE" "BCL3 WILD-TYPE" "BCL3 WILD-TYPE" 
    TCGA-IB-7887     TCGA-IB-7891     TCGA-IB-8126     TCGA-IB-8127 
"BCL3 WILD-TYPE" "BCL3 WILD-TYPE" "BCL3 WILD-TYPE" "BCL3 WILD-TYPE" 
    TCGA-IB-A5SS     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
"BCL3 WILD-TYPE" "BCL3 WILD-TYPE" "BCL3 WILD-TYPE" "BCL3 WILD-TYPE" 
D320V10, continuous
[1] "Remove cluster labels:" "BCL3 MUTATED"          
clus
  BCL3 MUTATED BCL3 WILD-TYPE 
             2             17 
    TCGA-FB-A4P5     TCGA-FB-A4P6     TCGA-FB-A5VM     TCGA-FB-A78T 
"BCL3 WILD-TYPE" "BCL3 WILD-TYPE" "BCL3 WILD-TYPE" "BCL3 WILD-TYPE" 
    TCGA-FB-A7DR     TCGA-H8-A6C1     TCGA-IB-7644     TCGA-IB-7649 
"BCL3 WILD-TYPE" "BCL3 WILD-TYPE" "BCL3 WILD-TYPE" "BCL3 WILD-TYPE" 
    TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7891     TCGA-IB-8126 
"BCL3 WILD-TYPE" "BCL3 WILD-TYPE" "BCL3 WILD-TYPE" "BCL3 WILD-TYPE" 
    TCGA-IB-8127     TCGA-IB-A5SS     TCGA-IB-A6UG     TCGA-LB-A7SX 
"BCL3 WILD-TYPE" "BCL3 WILD-TYPE" "BCL3 WILD-TYPE" "BCL3 WILD-TYPE" 
    TCGA-OE-A75W 
"BCL3 WILD-TYPE" 
                vv
clus             R0 R1 RX
  BCL3 MUTATED    2  0  0
  BCL3 WILD-TYPE 40 24  2
D320V11, multiclass
[1] "Remove cluster labels:" "BCL3 MUTATED"          
clus
  BCL3 MUTATED BCL3 WILD-TYPE 
             2             66 
    TCGA-F2-6879     TCGA-F2-6880     TCGA-F2-7273     TCGA-F2-7276 
"BCL3 WILD-TYPE" "BCL3 WILD-TYPE" "BCL3 WILD-TYPE" "BCL3 WILD-TYPE" 
    TCGA-F2-A44G     TCGA-F2-A44H     TCGA-FB-A4P5     TCGA-FB-A5VM 
"BCL3 WILD-TYPE" "BCL3 WILD-TYPE" "BCL3 WILD-TYPE" "BCL3 WILD-TYPE" 
    TCGA-FB-A78T     TCGA-FB-A7DR     TCGA-FZ-5920     TCGA-FZ-5922 
"BCL3 WILD-TYPE" "BCL3 WILD-TYPE" "BCL3 WILD-TYPE" "BCL3 WILD-TYPE" 
    TCGA-FZ-5923     TCGA-H8-A6C1     TCGA-HZ-7289     TCGA-HZ-7918 
"BCL3 WILD-TYPE" "BCL3 WILD-TYPE" "BCL3 WILD-TYPE" "BCL3 WILD-TYPE" 
    TCGA-HZ-7919     TCGA-HZ-7920     TCGA-HZ-7922     TCGA-HZ-7923 
"BCL3 WILD-TYPE" "BCL3 WILD-TYPE" "BCL3 WILD-TYPE" "BCL3 WILD-TYPE" 
    TCGA-HZ-7924     TCGA-HZ-7925     TCGA-HZ-7926     TCGA-HZ-8001 
"BCL3 WILD-TYPE" "BCL3 WILD-TYPE" "BCL3 WILD-TYPE" "BCL3 WILD-TYPE" 
    TCGA-HZ-8002     TCGA-HZ-8003     TCGA-HZ-8005     TCGA-HZ-8315 
"BCL3 WILD-TYPE" "BCL3 WILD-TYPE" "BCL3 WILD-TYPE" "BCL3 WILD-TYPE" 
    TCGA-HZ-8317     TCGA-HZ-8636     TCGA-HZ-8637     TCGA-HZ-8638 
"BCL3 WILD-TYPE" "BCL3 WILD-TYPE" "BCL3 WILD-TYPE" "BCL3 WILD-TYPE" 
    TCGA-HZ-A49G     TCGA-HZ-A49H     TCGA-HZ-A49I     TCGA-HZ-A4BH 
"BCL3 WILD-TYPE" "BCL3 WILD-TYPE" "BCL3 WILD-TYPE" "BCL3 WILD-TYPE" 
    TCGA-HZ-A4BK     TCGA-IB-7644     TCGA-IB-7645     TCGA-IB-7646 
"BCL3 WILD-TYPE" "BCL3 WILD-TYPE" "BCL3 WILD-TYPE" "BCL3 WILD-TYPE" 
    TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7652     TCGA-IB-7885 
"BCL3 WILD-TYPE" "BCL3 WILD-TYPE" "BCL3 WILD-TYPE" "BCL3 WILD-TYPE" 
    TCGA-IB-7886     TCGA-IB-7887     TCGA-IB-7888     TCGA-IB-7889 
"BCL3 WILD-TYPE" "BCL3 WILD-TYPE" "BCL3 WILD-TYPE" "BCL3 WILD-TYPE" 
    TCGA-IB-7890     TCGA-IB-7891     TCGA-IB-7893     TCGA-IB-7897 
"BCL3 WILD-TYPE" "BCL3 WILD-TYPE" "BCL3 WILD-TYPE" "BCL3 WILD-TYPE" 
    TCGA-IB-8126     TCGA-IB-8127     TCGA-IB-A5SO     TCGA-IB-A5SP 
"BCL3 WILD-TYPE" "BCL3 WILD-TYPE" "BCL3 WILD-TYPE" "BCL3 WILD-TYPE" 
    TCGA-IB-A5SQ     TCGA-IB-A5SS     TCGA-IB-A5ST     TCGA-IB-A6UG 
"BCL3 WILD-TYPE" "BCL3 WILD-TYPE" "BCL3 WILD-TYPE" "BCL3 WILD-TYPE" 
    TCGA-LB-A7SX     TCGA-OE-A75W     TCGA-Q3-A5QY     TCGA-US-A779 
"BCL3 WILD-TYPE" "BCL3 WILD-TYPE" "BCL3 WILD-TYPE" "BCL3 WILD-TYPE" 
    TCGA-US-A77E     TCGA-US-A77J 
"BCL3 WILD-TYPE" "BCL3 WILD-TYPE" 
D320V12, continuous

Clustering(321) Variable = PHACTR2 MUTATION ANALYSIS
D321V1, survival
                   sevent
clus2                0  1
  PHACTR2 MUTATED    3  3
  PHACTR2 WILD-TYPE 37 26
  PHACTR2 MUTATED PHACTR2 WILD-TYPE 
                6                63 
  PHACTR2 MUTATED PHACTR2 WILD-TYPE 
                3                26 
$`PHACTR2 MUTATED`
TCGA-HZ-8638 TCGA-HZ-A49H TCGA-HZ-A4BK TCGA-IB-7645 TCGA-IB-7651 TCGA-IB-7897 
        2.99         0.95         1.51        49.38        19.82        15.98 

$`PHACTR2 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P5 TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR 
        0.13        11.93        12.66         2.47         0.03         5.46 
TCGA-FZ-5920 TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 
        2.01        36.20        20.81        12.89         7.66        13.02 
TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 
        7.89         0.92         0.66         0.13         0.26        12.13 
TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 
       11.87         0.26         0.62         0.79         0.69         3.95 
TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8636 TCGA-HZ-A49G TCGA-HZ-A4BH TCGA-IB-7644 
        0.92         0.53         0.16         0.76         6.38        11.41 
TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7886 
        4.77        21.90        15.35        15.65        27.98         4.04 
TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-7893 
        3.62        43.79        15.81        19.66        16.04         3.85 
TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS 
        0.56        17.16        10.82         9.86         7.20        15.12 
TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W TCGA-PZ-A5RE TCGA-Q3-A5QY 
        0.26         1.35         4.18         3.62         8.12        13.68 
TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
       16.80        14.14        18.67 

  PHACTR2 MUTATED PHACTR2 WILD-TYPE 
             0.95              0.03 
  PHACTR2 MUTATED PHACTR2 WILD-TYPE 
            49.38             43.79 
  PHACTR2 MUTATED PHACTR2 WILD-TYPE 
            9.485             7.660 
[1] "0.9 - 49.4 (9.5)" "0.0 - 43.8 (7.7)"
       TCGA-F2-6879        TCGA-F2-6880        TCGA-F2-7273        TCGA-F2-7276 
"PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE" 
       TCGA-F2-A44G        TCGA-F2-A44H        TCGA-FB-A4P5        TCGA-FB-A4P6 
"PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE" 
       TCGA-FB-A545        TCGA-FB-A5VM        TCGA-FB-A78T        TCGA-FB-A7DR 
"PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE" 
       TCGA-FZ-5920        TCGA-FZ-5922        TCGA-FZ-5923        TCGA-H6-8124 
"PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE" 
       TCGA-H6-A45N        TCGA-H8-A6C1        TCGA-HZ-7289        TCGA-HZ-7918 
"PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE" 
       TCGA-HZ-7919        TCGA-HZ-7922        TCGA-HZ-7923        TCGA-HZ-7924 
"PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE" 
       TCGA-HZ-7925        TCGA-HZ-7926        TCGA-HZ-8001        TCGA-HZ-8002 
"PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE" 
       TCGA-HZ-8003        TCGA-HZ-8005        TCGA-HZ-8315        TCGA-HZ-8317 
"PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE" 
       TCGA-HZ-8636        TCGA-HZ-8638        TCGA-HZ-A49G        TCGA-HZ-A49H 
"PHACTR2 WILD-TYPE"   "PHACTR2 MUTATED" "PHACTR2 WILD-TYPE"   "PHACTR2 MUTATED" 
       TCGA-HZ-A4BH        TCGA-HZ-A4BK        TCGA-IB-7644        TCGA-IB-7645 
"PHACTR2 WILD-TYPE"   "PHACTR2 MUTATED" "PHACTR2 WILD-TYPE"   "PHACTR2 MUTATED" 
       TCGA-IB-7646        TCGA-IB-7647        TCGA-IB-7649        TCGA-IB-7651 
"PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE"   "PHACTR2 MUTATED" 
       TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-7886        TCGA-IB-7887 
"PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE" 
       TCGA-IB-7888        TCGA-IB-7889        TCGA-IB-7890        TCGA-IB-7891 
"PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE" 
       TCGA-IB-7893        TCGA-IB-7897        TCGA-IB-8126        TCGA-IB-8127 
"PHACTR2 WILD-TYPE"   "PHACTR2 MUTATED" "PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE" 
       TCGA-IB-A5SO        TCGA-IB-A5SP        TCGA-IB-A5SQ        TCGA-IB-A5SS 
"PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE" 
       TCGA-IB-A5ST        TCGA-IB-A6UG        TCGA-LB-A7SX        TCGA-OE-A75W 
"PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE" 
       TCGA-PZ-A5RE        TCGA-Q3-A5QY        TCGA-US-A779        TCGA-US-A77E 
"PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE" 
       TCGA-US-A77J 
"PHACTR2 WILD-TYPE" 
       TCGA-F2-6879        TCGA-F2-6880        TCGA-F2-7273        TCGA-F2-7276 
"PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE" 
       TCGA-F2-A44G        TCGA-F2-A44H        TCGA-FB-A4P5        TCGA-FB-A4P6 
"PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE" 
       TCGA-FB-A545        TCGA-FB-A5VM        TCGA-FB-A78T        TCGA-FB-A7DR 
"PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE" 
       TCGA-FZ-5920        TCGA-FZ-5922        TCGA-FZ-5923        TCGA-H6-8124 
"PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE" 
       TCGA-H6-A45N        TCGA-H8-A6C1        TCGA-HZ-7289        TCGA-HZ-7918 
"PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE" 
       TCGA-HZ-7919        TCGA-HZ-7922        TCGA-HZ-7923        TCGA-HZ-7924 
"PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE" 
       TCGA-HZ-7925        TCGA-HZ-7926        TCGA-HZ-8001        TCGA-HZ-8002 
"PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE" 
       TCGA-HZ-8003        TCGA-HZ-8005        TCGA-HZ-8315        TCGA-HZ-8317 
"PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE" 
       TCGA-HZ-8636        TCGA-HZ-8638        TCGA-HZ-A49G        TCGA-HZ-A49H 
"PHACTR2 WILD-TYPE"   "PHACTR2 MUTATED" "PHACTR2 WILD-TYPE"   "PHACTR2 MUTATED" 
       TCGA-HZ-A4BH        TCGA-HZ-A4BK        TCGA-IB-7644        TCGA-IB-7645 
"PHACTR2 WILD-TYPE"   "PHACTR2 MUTATED" "PHACTR2 WILD-TYPE"   "PHACTR2 MUTATED" 
       TCGA-IB-7646        TCGA-IB-7647        TCGA-IB-7649        TCGA-IB-7651 
"PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE"   "PHACTR2 MUTATED" 
       TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-7886        TCGA-IB-7887 
"PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE" 
       TCGA-IB-7888        TCGA-IB-7889        TCGA-IB-7890        TCGA-IB-7891 
"PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE" 
       TCGA-IB-7893        TCGA-IB-7897        TCGA-IB-8126        TCGA-IB-8127 
"PHACTR2 WILD-TYPE"   "PHACTR2 MUTATED" "PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE" 
       TCGA-IB-A5SO        TCGA-IB-A5SP        TCGA-IB-A5SQ        TCGA-IB-A5SS 
"PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE" 
       TCGA-IB-A5ST        TCGA-IB-A6UG        TCGA-LB-A7SX        TCGA-OE-A75W 
"PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE" 
       TCGA-PZ-A5RE        TCGA-Q3-A5QY        TCGA-US-A779        TCGA-US-A77E 
"PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE" 
       TCGA-US-A77J 
"PHACTR2 WILD-TYPE" 
       TCGA-F2-6879        TCGA-F2-6880        TCGA-F2-7273        TCGA-F2-7276 
"PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE" 
       TCGA-F2-A44G        TCGA-F2-A44H        TCGA-FB-A4P5        TCGA-FB-A4P6 
"PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE" 
       TCGA-FB-A545        TCGA-FB-A5VM        TCGA-FB-A78T        TCGA-FB-A7DR 
"PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE" 
       TCGA-FZ-5920        TCGA-FZ-5922        TCGA-FZ-5923        TCGA-H6-8124 
"PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE" 
       TCGA-H6-A45N        TCGA-H8-A6C1        TCGA-HZ-7289        TCGA-HZ-7918 
"PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE" 
       TCGA-HZ-7919        TCGA-HZ-7922        TCGA-HZ-7923        TCGA-HZ-7924 
"PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE" 
       TCGA-HZ-7925        TCGA-HZ-7926        TCGA-HZ-8001        TCGA-HZ-8002 
"PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE" 
       TCGA-HZ-8003        TCGA-HZ-8005        TCGA-HZ-8315        TCGA-HZ-8317 
"PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE" 
       TCGA-HZ-8636        TCGA-HZ-8638        TCGA-HZ-A49G        TCGA-HZ-A49H 
"PHACTR2 WILD-TYPE"   "PHACTR2 MUTATED" "PHACTR2 WILD-TYPE"   "PHACTR2 MUTATED" 
       TCGA-HZ-A4BH        TCGA-HZ-A4BK        TCGA-IB-7644        TCGA-IB-7645 
"PHACTR2 WILD-TYPE"   "PHACTR2 MUTATED" "PHACTR2 WILD-TYPE"   "PHACTR2 MUTATED" 
       TCGA-IB-7646        TCGA-IB-7647        TCGA-IB-7649        TCGA-IB-7651 
"PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE"   "PHACTR2 MUTATED" 
       TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-7886        TCGA-IB-7887 
"PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE" 
       TCGA-IB-7888        TCGA-IB-7889        TCGA-IB-7890        TCGA-IB-7891 
"PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE" 
       TCGA-IB-7893        TCGA-IB-7897        TCGA-IB-8126        TCGA-IB-8127 
"PHACTR2 WILD-TYPE"   "PHACTR2 MUTATED" "PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE" 
       TCGA-IB-A5SO        TCGA-IB-A5SP        TCGA-IB-A5SQ        TCGA-IB-A5SS 
"PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE" 
       TCGA-IB-A5ST        TCGA-IB-A6UG        TCGA-LB-A7SX        TCGA-OE-A75W 
"PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE" 
       TCGA-PZ-A5RE        TCGA-Q3-A5QY        TCGA-US-A779        TCGA-US-A77E 
"PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE" 
       TCGA-US-A77J 
"PHACTR2 WILD-TYPE" 
[1] "hr=" "2.5"
D321V2, continuous
                   vv
clus                STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  PHACTR2 MUTATED          1        0         0         5         0        0
  PHACTR2 WILD-TYPE        0        4        11        46         2        3
D321V3, multiclass
                   vv
clus                T1+T2 T3+T4
  PHACTR2 MUTATED       1     5
  PHACTR2 WILD-TYPE     5    61
D321V4, multiclass
       clus
vv      PHACTR2 MUTATED PHACTR2 WILD-TYPE
  T1+T2               1                 5
  T3+T4               5                61
D321V5, binary
                   cls
clus                 0  1
  PHACTR2 MUTATED    1  5
  PHACTR2 WILD-TYPE 16 49
[1] "tbl2"
                   cls
clus                [,1] [,2]
  PHACTR2 MUTATED      1    5
  PHACTR2 WILD-TYPE   16   49
   clus
vv  PHACTR2 MUTATED PHACTR2 WILD-TYPE
  0               1                16
  1               5                49
                   vv
clus                M0 M1 MX
  PHACTR2 MUTATED    3  0  3
  PHACTR2 WILD-TYPE 36  3 27
D321V6, multiclass
    clus
vv   PHACTR2 MUTATED PHACTR2 WILD-TYPE
  M0               3                36
  M1               0                 3
  MX               3                27
D321V7, binary
                   cls
clus                 0  1
  PHACTR2 MUTATED    5  1
  PHACTR2 WILD-TYPE 31 35
[1] "tbl2"
                   cls
clus                [,1] [,2]
  PHACTR2 MUTATED      5    1
  PHACTR2 WILD-TYPE   31   35
        clus
vv       PHACTR2 MUTATED PHACTR2 WILD-TYPE
  FEMALE               5                31
  MALE                 1                35
                   vv
clus                PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  PHACTR2 MUTATED                                     4
  PHACTR2 WILD-TYPE                                  61
                   vv
clus                PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  PHACTR2 MUTATED                                       1
  PHACTR2 WILD-TYPE                                     3
                   vv
clus                PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  PHACTR2 MUTATED                                                  1
  PHACTR2 WILD-TYPE                                                1
D321V8, multiclass
                                                  clus
vv                                                 PHACTR2 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                            4
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                          1
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA               1
                                                  clus
vv                                                 PHACTR2 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                             61
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                            3
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                 1
D321V9, continuous
[1] "Remove cluster labels:" "PHACTR2 MUTATED"       
clus
  PHACTR2 MUTATED PHACTR2 WILD-TYPE 
                1                21 
       TCGA-F2-6880        TCGA-FB-A4P5        TCGA-FB-A4P6        TCGA-FB-A5VM 
"PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE" 
       TCGA-FB-A78T        TCGA-FB-A7DR        TCGA-H6-8124        TCGA-H6-A45N 
"PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE" 
       TCGA-H8-A6C1        TCGA-IB-7644        TCGA-IB-7649        TCGA-IB-7885 
"PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE" 
       TCGA-IB-7886        TCGA-IB-7887        TCGA-IB-7891        TCGA-IB-8126 
"PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE" 
       TCGA-IB-8127        TCGA-IB-A5SS        TCGA-IB-A6UG        TCGA-LB-A7SX 
"PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE" 
       TCGA-OE-A75W 
"PHACTR2 WILD-TYPE" 
D321V10, continuous
[1] "Remove cluster labels:" "PHACTR2 MUTATED"       
clus
  PHACTR2 MUTATED PHACTR2 WILD-TYPE 
                1                18 
       TCGA-FB-A4P5        TCGA-FB-A4P6        TCGA-FB-A5VM        TCGA-FB-A78T 
"PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE" 
       TCGA-FB-A7DR        TCGA-H6-8124        TCGA-H8-A6C1        TCGA-IB-7644 
"PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE" 
       TCGA-IB-7649        TCGA-IB-7885        TCGA-IB-7886        TCGA-IB-7891 
"PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE" 
       TCGA-IB-8126        TCGA-IB-8127        TCGA-IB-A5SS        TCGA-IB-A6UG 
"PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE" 
       TCGA-LB-A7SX        TCGA-OE-A75W 
"PHACTR2 WILD-TYPE" "PHACTR2 WILD-TYPE" 
                   vv
clus                R0 R1 RX
  PHACTR2 MUTATED    5  1  0
  PHACTR2 WILD-TYPE 37 23  2
D321V11, multiclass
    clus
vv   PHACTR2 MUTATED PHACTR2 WILD-TYPE
  R0               5                37
  R1               1                23
  RX               0                 2
D321V12, continuous

Clustering(322) Variable = AFF4 MUTATION ANALYSIS
D322V1, survival
                sevent
clus2             0  1
  AFF4 MUTATED    0  3
  AFF4 WILD-TYPE 40 26
  AFF4 MUTATED AFF4 WILD-TYPE 
             3             66 
  AFF4 MUTATED AFF4 WILD-TYPE 
             3             26 
$`AFF4 MUTATED`
TCGA-IB-7646 TCGA-IB-7893 TCGA-IB-7897 
        4.77         3.85        15.98 

$`AFF4 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P5 TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR 
        0.13        11.93        12.66         2.47         0.03         5.46 
TCGA-FZ-5920 TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 
        2.01        36.20        20.81        12.89         7.66        13.02 
TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 
        7.89         0.92         0.66         0.13         0.26        12.13 
TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 
       11.87         0.26         0.62         0.79         0.69         3.95 
TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H 
        0.92         0.53         0.16         2.99         0.76         0.95 
TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7647 TCGA-IB-7649 
        6.38         1.51        11.41        49.38        21.90        15.35 
TCGA-IB-7651 TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7888 
       19.82        15.65        27.98         4.04         3.62        43.79 
TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO 
       15.81        19.66        16.04         0.56        17.16        10.82 
TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX 
        9.86         7.20        15.12         0.26         1.35         4.18 
TCGA-OE-A75W TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
        3.62         8.12        13.68        16.80        14.14        18.67 

  AFF4 MUTATED AFF4 WILD-TYPE 
          3.85           0.03 
  AFF4 MUTATED AFF4 WILD-TYPE 
         15.98          49.38 
  AFF4 MUTATED AFF4 WILD-TYPE 
         4.770          7.775 
[1] "3.9 - 16.0 (4.8)" "0.0 - 49.4 (7.8)"
    TCGA-F2-6879     TCGA-F2-6880     TCGA-F2-7273     TCGA-F2-7276 
"AFF4 WILD-TYPE" "AFF4 WILD-TYPE" "AFF4 WILD-TYPE" "AFF4 WILD-TYPE" 
    TCGA-F2-A44G     TCGA-F2-A44H     TCGA-FB-A4P5     TCGA-FB-A4P6 
"AFF4 WILD-TYPE" "AFF4 WILD-TYPE" "AFF4 WILD-TYPE" "AFF4 WILD-TYPE" 
    TCGA-FB-A545     TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-FB-A7DR 
"AFF4 WILD-TYPE" "AFF4 WILD-TYPE" "AFF4 WILD-TYPE" "AFF4 WILD-TYPE" 
    TCGA-FZ-5920     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-H6-8124 
"AFF4 WILD-TYPE" "AFF4 WILD-TYPE" "AFF4 WILD-TYPE" "AFF4 WILD-TYPE" 
    TCGA-H6-A45N     TCGA-H8-A6C1     TCGA-HZ-7289     TCGA-HZ-7918 
"AFF4 WILD-TYPE" "AFF4 WILD-TYPE" "AFF4 WILD-TYPE" "AFF4 WILD-TYPE" 
    TCGA-HZ-7919     TCGA-HZ-7922     TCGA-HZ-7923     TCGA-HZ-7924 
"AFF4 WILD-TYPE" "AFF4 WILD-TYPE" "AFF4 WILD-TYPE" "AFF4 WILD-TYPE" 
    TCGA-HZ-7925     TCGA-HZ-7926     TCGA-HZ-8001     TCGA-HZ-8002 
"AFF4 WILD-TYPE" "AFF4 WILD-TYPE" "AFF4 WILD-TYPE" "AFF4 WILD-TYPE" 
    TCGA-HZ-8003     TCGA-HZ-8005     TCGA-HZ-8315     TCGA-HZ-8317 
"AFF4 WILD-TYPE" "AFF4 WILD-TYPE" "AFF4 WILD-TYPE" "AFF4 WILD-TYPE" 
    TCGA-HZ-8636     TCGA-HZ-8638     TCGA-HZ-A49G     TCGA-HZ-A49H 
"AFF4 WILD-TYPE" "AFF4 WILD-TYPE" "AFF4 WILD-TYPE" "AFF4 WILD-TYPE" 
    TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-IB-7644     TCGA-IB-7645 
"AFF4 WILD-TYPE" "AFF4 WILD-TYPE" "AFF4 WILD-TYPE" "AFF4 WILD-TYPE" 
    TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7651 
  "AFF4 MUTATED" "AFF4 WILD-TYPE" "AFF4 WILD-TYPE" "AFF4 WILD-TYPE" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887 
"AFF4 WILD-TYPE" "AFF4 WILD-TYPE" "AFF4 WILD-TYPE" "AFF4 WILD-TYPE" 
    TCGA-IB-7888     TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891 
"AFF4 WILD-TYPE" "AFF4 WILD-TYPE" "AFF4 WILD-TYPE" "AFF4 WILD-TYPE" 
    TCGA-IB-7893     TCGA-IB-7897     TCGA-IB-8126     TCGA-IB-8127 
  "AFF4 MUTATED"   "AFF4 MUTATED" "AFF4 WILD-TYPE" "AFF4 WILD-TYPE" 
    TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS 
"AFF4 WILD-TYPE" "AFF4 WILD-TYPE" "AFF4 WILD-TYPE" "AFF4 WILD-TYPE" 
    TCGA-IB-A5ST     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
"AFF4 WILD-TYPE" "AFF4 WILD-TYPE" "AFF4 WILD-TYPE" "AFF4 WILD-TYPE" 
    TCGA-PZ-A5RE     TCGA-Q3-A5QY     TCGA-US-A779     TCGA-US-A77E 
"AFF4 WILD-TYPE" "AFF4 WILD-TYPE" "AFF4 WILD-TYPE" "AFF4 WILD-TYPE" 
    TCGA-US-A77J 
"AFF4 WILD-TYPE" 
    TCGA-F2-6879     TCGA-F2-6880     TCGA-F2-7273     TCGA-F2-7276 
"AFF4 WILD-TYPE" "AFF4 WILD-TYPE" "AFF4 WILD-TYPE" "AFF4 WILD-TYPE" 
    TCGA-F2-A44G     TCGA-F2-A44H     TCGA-FB-A4P5     TCGA-FB-A4P6 
"AFF4 WILD-TYPE" "AFF4 WILD-TYPE" "AFF4 WILD-TYPE" "AFF4 WILD-TYPE" 
    TCGA-FB-A545     TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-FB-A7DR 
"AFF4 WILD-TYPE" "AFF4 WILD-TYPE" "AFF4 WILD-TYPE" "AFF4 WILD-TYPE" 
    TCGA-FZ-5920     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-H6-8124 
"AFF4 WILD-TYPE" "AFF4 WILD-TYPE" "AFF4 WILD-TYPE" "AFF4 WILD-TYPE" 
    TCGA-H6-A45N     TCGA-H8-A6C1     TCGA-HZ-7289     TCGA-HZ-7918 
"AFF4 WILD-TYPE" "AFF4 WILD-TYPE" "AFF4 WILD-TYPE" "AFF4 WILD-TYPE" 
    TCGA-HZ-7919     TCGA-HZ-7922     TCGA-HZ-7923     TCGA-HZ-7924 
"AFF4 WILD-TYPE" "AFF4 WILD-TYPE" "AFF4 WILD-TYPE" "AFF4 WILD-TYPE" 
    TCGA-HZ-7925     TCGA-HZ-7926     TCGA-HZ-8001     TCGA-HZ-8002 
"AFF4 WILD-TYPE" "AFF4 WILD-TYPE" "AFF4 WILD-TYPE" "AFF4 WILD-TYPE" 
    TCGA-HZ-8003     TCGA-HZ-8005     TCGA-HZ-8315     TCGA-HZ-8317 
"AFF4 WILD-TYPE" "AFF4 WILD-TYPE" "AFF4 WILD-TYPE" "AFF4 WILD-TYPE" 
    TCGA-HZ-8636     TCGA-HZ-8638     TCGA-HZ-A49G     TCGA-HZ-A49H 
"AFF4 WILD-TYPE" "AFF4 WILD-TYPE" "AFF4 WILD-TYPE" "AFF4 WILD-TYPE" 
    TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-IB-7644     TCGA-IB-7645 
"AFF4 WILD-TYPE" "AFF4 WILD-TYPE" "AFF4 WILD-TYPE" "AFF4 WILD-TYPE" 
    TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7651 
  "AFF4 MUTATED" "AFF4 WILD-TYPE" "AFF4 WILD-TYPE" "AFF4 WILD-TYPE" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887 
"AFF4 WILD-TYPE" "AFF4 WILD-TYPE" "AFF4 WILD-TYPE" "AFF4 WILD-TYPE" 
    TCGA-IB-7888     TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891 
"AFF4 WILD-TYPE" "AFF4 WILD-TYPE" "AFF4 WILD-TYPE" "AFF4 WILD-TYPE" 
    TCGA-IB-7893     TCGA-IB-7897     TCGA-IB-8126     TCGA-IB-8127 
  "AFF4 MUTATED"   "AFF4 MUTATED" "AFF4 WILD-TYPE" "AFF4 WILD-TYPE" 
    TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS 
"AFF4 WILD-TYPE" "AFF4 WILD-TYPE" "AFF4 WILD-TYPE" "AFF4 WILD-TYPE" 
    TCGA-IB-A5ST     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
"AFF4 WILD-TYPE" "AFF4 WILD-TYPE" "AFF4 WILD-TYPE" "AFF4 WILD-TYPE" 
    TCGA-PZ-A5RE     TCGA-Q3-A5QY     TCGA-US-A779     TCGA-US-A77E 
"AFF4 WILD-TYPE" "AFF4 WILD-TYPE" "AFF4 WILD-TYPE" "AFF4 WILD-TYPE" 
    TCGA-US-A77J 
"AFF4 WILD-TYPE" 
    TCGA-F2-6879     TCGA-F2-6880     TCGA-F2-7273     TCGA-F2-7276 
"AFF4 WILD-TYPE" "AFF4 WILD-TYPE" "AFF4 WILD-TYPE" "AFF4 WILD-TYPE" 
    TCGA-F2-A44G     TCGA-F2-A44H     TCGA-FB-A4P5     TCGA-FB-A4P6 
"AFF4 WILD-TYPE" "AFF4 WILD-TYPE" "AFF4 WILD-TYPE" "AFF4 WILD-TYPE" 
    TCGA-FB-A545     TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-FB-A7DR 
"AFF4 WILD-TYPE" "AFF4 WILD-TYPE" "AFF4 WILD-TYPE" "AFF4 WILD-TYPE" 
    TCGA-FZ-5920     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-H6-8124 
"AFF4 WILD-TYPE" "AFF4 WILD-TYPE" "AFF4 WILD-TYPE" "AFF4 WILD-TYPE" 
    TCGA-H6-A45N     TCGA-H8-A6C1     TCGA-HZ-7289     TCGA-HZ-7918 
"AFF4 WILD-TYPE" "AFF4 WILD-TYPE" "AFF4 WILD-TYPE" "AFF4 WILD-TYPE" 
    TCGA-HZ-7919     TCGA-HZ-7922     TCGA-HZ-7923     TCGA-HZ-7924 
"AFF4 WILD-TYPE" "AFF4 WILD-TYPE" "AFF4 WILD-TYPE" "AFF4 WILD-TYPE" 
    TCGA-HZ-7925     TCGA-HZ-7926     TCGA-HZ-8001     TCGA-HZ-8002 
"AFF4 WILD-TYPE" "AFF4 WILD-TYPE" "AFF4 WILD-TYPE" "AFF4 WILD-TYPE" 
    TCGA-HZ-8003     TCGA-HZ-8005     TCGA-HZ-8315     TCGA-HZ-8317 
"AFF4 WILD-TYPE" "AFF4 WILD-TYPE" "AFF4 WILD-TYPE" "AFF4 WILD-TYPE" 
    TCGA-HZ-8636     TCGA-HZ-8638     TCGA-HZ-A49G     TCGA-HZ-A49H 
"AFF4 WILD-TYPE" "AFF4 WILD-TYPE" "AFF4 WILD-TYPE" "AFF4 WILD-TYPE" 
    TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-IB-7644     TCGA-IB-7645 
"AFF4 WILD-TYPE" "AFF4 WILD-TYPE" "AFF4 WILD-TYPE" "AFF4 WILD-TYPE" 
    TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7651 
  "AFF4 MUTATED" "AFF4 WILD-TYPE" "AFF4 WILD-TYPE" "AFF4 WILD-TYPE" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887 
"AFF4 WILD-TYPE" "AFF4 WILD-TYPE" "AFF4 WILD-TYPE" "AFF4 WILD-TYPE" 
    TCGA-IB-7888     TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891 
"AFF4 WILD-TYPE" "AFF4 WILD-TYPE" "AFF4 WILD-TYPE" "AFF4 WILD-TYPE" 
    TCGA-IB-7893     TCGA-IB-7897     TCGA-IB-8126     TCGA-IB-8127 
  "AFF4 MUTATED"   "AFF4 MUTATED" "AFF4 WILD-TYPE" "AFF4 WILD-TYPE" 
    TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS 
"AFF4 WILD-TYPE" "AFF4 WILD-TYPE" "AFF4 WILD-TYPE" "AFF4 WILD-TYPE" 
    TCGA-IB-A5ST     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
"AFF4 WILD-TYPE" "AFF4 WILD-TYPE" "AFF4 WILD-TYPE" "AFF4 WILD-TYPE" 
    TCGA-PZ-A5RE     TCGA-Q3-A5QY     TCGA-US-A779     TCGA-US-A77E 
"AFF4 WILD-TYPE" "AFF4 WILD-TYPE" "AFF4 WILD-TYPE" "AFF4 WILD-TYPE" 
    TCGA-US-A77J 
"AFF4 WILD-TYPE" 
[1] "hr=" "3.6"
D322V2, continuous
                vv
clus             STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  AFF4 MUTATED          0        0         1         2         0        0
  AFF4 WILD-TYPE        1        4        10        49         2        3
D322V3, multiclass
                vv
clus             T1+T2 T3+T4
  AFF4 MUTATED       0     3
  AFF4 WILD-TYPE     6    63
D322V4, multiclass
       clus
vv      AFF4 MUTATED AFF4 WILD-TYPE
  T1+T2            0              6
  T3+T4            3             63
D322V5, binary
                cls
clus              0  1
  AFF4 MUTATED    1  2
  AFF4 WILD-TYPE 16 52
[1] "tbl2"
                cls
clus             [,1] [,2]
  AFF4 MUTATED      1    2
  AFF4 WILD-TYPE   16   52
   clus
vv  AFF4 MUTATED AFF4 WILD-TYPE
  0            1             16
  1            2             52
                vv
clus             M0 M1 MX
  AFF4 MUTATED    3  0  0
  AFF4 WILD-TYPE 36  3 30
D322V6, multiclass
    clus
vv   AFF4 MUTATED AFF4 WILD-TYPE
  M0            3             36
  M1            0              3
  MX            0             30
D322V7, binary
                cls
clus              0  1
  AFF4 MUTATED    1  2
  AFF4 WILD-TYPE 35 34
[1] "tbl2"
                cls
clus             [,1] [,2]
  AFF4 MUTATED      1    2
  AFF4 WILD-TYPE   35   34
        clus
vv       AFF4 MUTATED AFF4 WILD-TYPE
  FEMALE            1             35
  MALE              2             34
                vv
clus             PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  AFF4 MUTATED                                     3
  AFF4 WILD-TYPE                                  62
                vv
clus             PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  AFF4 MUTATED                                       0
  AFF4 WILD-TYPE                                     4
                vv
clus             PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  AFF4 MUTATED                                                  0
  AFF4 WILD-TYPE                                                2
D322V8, multiclass
                                                  clus
vv                                                 AFF4 MUTATED AFF4 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                         3             62
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                       0              4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA            0              2
D322V9, continuous
D322V10, continuous
                vv
clus             R0 R1 RX
  AFF4 MUTATED    2  1  0
  AFF4 WILD-TYPE 40 23  2
D322V11, multiclass
    clus
vv   AFF4 MUTATED AFF4 WILD-TYPE
  R0            2             40
  R1            1             23
  RX            0              2
D322V12, continuous

Clustering(323) Variable = UNC5A MUTATION ANALYSIS
D323V1, survival
                 sevent
clus2              0  1
  UNC5A MUTATED    1  4
  UNC5A WILD-TYPE 39 25
  UNC5A MUTATED UNC5A WILD-TYPE 
              5              64 
  UNC5A MUTATED UNC5A WILD-TYPE 
              4              25 
$`UNC5A MUTATED`
TCGA-F2-6880 TCGA-F2-A44G TCGA-IB-7651 TCGA-IB-7893 TCGA-IB-A5SQ 
        9.70         5.03        19.82         3.85         7.20 

$`UNC5A WILD-TYPE`
TCGA-F2-6879 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44H TCGA-FB-A4P5 TCGA-FB-A4P6 
       10.98        11.84         7.10        19.27         0.13        11.93 
TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR TCGA-FZ-5920 TCGA-FZ-5922 
       12.66         2.47         0.03         5.46         2.01        36.20 
TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7289 TCGA-HZ-7918 
       20.81        12.89         7.66        13.02         7.89         0.92 
TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 
        0.66         0.13         0.26        12.13        11.87         0.26 
TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 
        0.62         0.79         0.69         3.95         0.92         0.53 
TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK 
        0.16         2.99         0.76         0.95         6.38         1.51 
TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7652 
       11.41        49.38         4.77        21.90        15.35        15.65 
TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 
       27.98         4.04         3.62        43.79        15.81        19.66 
TCGA-IB-7891 TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP 
       16.04        15.98         0.56        17.16        10.82         9.86 
TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W TCGA-PZ-A5RE 
       15.12         0.26         1.35         4.18         3.62         8.12 
TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
       13.68        16.80        14.14        18.67 

  UNC5A MUTATED UNC5A WILD-TYPE 
           3.85            0.03 
  UNC5A MUTATED UNC5A WILD-TYPE 
          19.82           49.38 
  UNC5A MUTATED UNC5A WILD-TYPE 
          7.200           7.775 
[1] "3.9 - 19.8 (7.2)" "0.0 - 49.4 (7.8)"
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"UNC5A WILD-TYPE"   "UNC5A MUTATED" "UNC5A WILD-TYPE" "UNC5A WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
  "UNC5A MUTATED" "UNC5A WILD-TYPE" "UNC5A WILD-TYPE" "UNC5A WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"UNC5A WILD-TYPE" "UNC5A WILD-TYPE" "UNC5A WILD-TYPE" "UNC5A WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"UNC5A WILD-TYPE" "UNC5A WILD-TYPE" "UNC5A WILD-TYPE" "UNC5A WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"UNC5A WILD-TYPE" "UNC5A WILD-TYPE" "UNC5A WILD-TYPE" "UNC5A WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"UNC5A WILD-TYPE" "UNC5A WILD-TYPE" "UNC5A WILD-TYPE" "UNC5A WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"UNC5A WILD-TYPE" "UNC5A WILD-TYPE" "UNC5A WILD-TYPE" "UNC5A WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"UNC5A WILD-TYPE" "UNC5A WILD-TYPE" "UNC5A WILD-TYPE" "UNC5A WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"UNC5A WILD-TYPE" "UNC5A WILD-TYPE" "UNC5A WILD-TYPE" "UNC5A WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"UNC5A WILD-TYPE" "UNC5A WILD-TYPE" "UNC5A WILD-TYPE" "UNC5A WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"UNC5A WILD-TYPE" "UNC5A WILD-TYPE" "UNC5A WILD-TYPE"   "UNC5A MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"UNC5A WILD-TYPE" "UNC5A WILD-TYPE" "UNC5A WILD-TYPE" "UNC5A WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"UNC5A WILD-TYPE" "UNC5A WILD-TYPE" "UNC5A WILD-TYPE" "UNC5A WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
  "UNC5A MUTATED" "UNC5A WILD-TYPE" "UNC5A WILD-TYPE" "UNC5A WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"UNC5A WILD-TYPE" "UNC5A WILD-TYPE"   "UNC5A MUTATED" "UNC5A WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"UNC5A WILD-TYPE" "UNC5A WILD-TYPE" "UNC5A WILD-TYPE" "UNC5A WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"UNC5A WILD-TYPE" "UNC5A WILD-TYPE" "UNC5A WILD-TYPE" "UNC5A WILD-TYPE" 
     TCGA-US-A77J 
"UNC5A WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"UNC5A WILD-TYPE"   "UNC5A MUTATED" "UNC5A WILD-TYPE" "UNC5A WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
  "UNC5A MUTATED" "UNC5A WILD-TYPE" "UNC5A WILD-TYPE" "UNC5A WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"UNC5A WILD-TYPE" "UNC5A WILD-TYPE" "UNC5A WILD-TYPE" "UNC5A WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"UNC5A WILD-TYPE" "UNC5A WILD-TYPE" "UNC5A WILD-TYPE" "UNC5A WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"UNC5A WILD-TYPE" "UNC5A WILD-TYPE" "UNC5A WILD-TYPE" "UNC5A WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"UNC5A WILD-TYPE" "UNC5A WILD-TYPE" "UNC5A WILD-TYPE" "UNC5A WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"UNC5A WILD-TYPE" "UNC5A WILD-TYPE" "UNC5A WILD-TYPE" "UNC5A WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"UNC5A WILD-TYPE" "UNC5A WILD-TYPE" "UNC5A WILD-TYPE" "UNC5A WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"UNC5A WILD-TYPE" "UNC5A WILD-TYPE" "UNC5A WILD-TYPE" "UNC5A WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"UNC5A WILD-TYPE" "UNC5A WILD-TYPE" "UNC5A WILD-TYPE" "UNC5A WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"UNC5A WILD-TYPE" "UNC5A WILD-TYPE" "UNC5A WILD-TYPE"   "UNC5A MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"UNC5A WILD-TYPE" "UNC5A WILD-TYPE" "UNC5A WILD-TYPE" "UNC5A WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"UNC5A WILD-TYPE" "UNC5A WILD-TYPE" "UNC5A WILD-TYPE" "UNC5A WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
  "UNC5A MUTATED" "UNC5A WILD-TYPE" "UNC5A WILD-TYPE" "UNC5A WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"UNC5A WILD-TYPE" "UNC5A WILD-TYPE"   "UNC5A MUTATED" "UNC5A WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"UNC5A WILD-TYPE" "UNC5A WILD-TYPE" "UNC5A WILD-TYPE" "UNC5A WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"UNC5A WILD-TYPE" "UNC5A WILD-TYPE" "UNC5A WILD-TYPE" "UNC5A WILD-TYPE" 
     TCGA-US-A77J 
"UNC5A WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"UNC5A WILD-TYPE"   "UNC5A MUTATED" "UNC5A WILD-TYPE" "UNC5A WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
  "UNC5A MUTATED" "UNC5A WILD-TYPE" "UNC5A WILD-TYPE" "UNC5A WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"UNC5A WILD-TYPE" "UNC5A WILD-TYPE" "UNC5A WILD-TYPE" "UNC5A WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"UNC5A WILD-TYPE" "UNC5A WILD-TYPE" "UNC5A WILD-TYPE" "UNC5A WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"UNC5A WILD-TYPE" "UNC5A WILD-TYPE" "UNC5A WILD-TYPE" "UNC5A WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"UNC5A WILD-TYPE" "UNC5A WILD-TYPE" "UNC5A WILD-TYPE" "UNC5A WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"UNC5A WILD-TYPE" "UNC5A WILD-TYPE" "UNC5A WILD-TYPE" "UNC5A WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"UNC5A WILD-TYPE" "UNC5A WILD-TYPE" "UNC5A WILD-TYPE" "UNC5A WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"UNC5A WILD-TYPE" "UNC5A WILD-TYPE" "UNC5A WILD-TYPE" "UNC5A WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"UNC5A WILD-TYPE" "UNC5A WILD-TYPE" "UNC5A WILD-TYPE" "UNC5A WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"UNC5A WILD-TYPE" "UNC5A WILD-TYPE" "UNC5A WILD-TYPE"   "UNC5A MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"UNC5A WILD-TYPE" "UNC5A WILD-TYPE" "UNC5A WILD-TYPE" "UNC5A WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"UNC5A WILD-TYPE" "UNC5A WILD-TYPE" "UNC5A WILD-TYPE" "UNC5A WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
  "UNC5A MUTATED" "UNC5A WILD-TYPE" "UNC5A WILD-TYPE" "UNC5A WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"UNC5A WILD-TYPE" "UNC5A WILD-TYPE"   "UNC5A MUTATED" "UNC5A WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"UNC5A WILD-TYPE" "UNC5A WILD-TYPE" "UNC5A WILD-TYPE" "UNC5A WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"UNC5A WILD-TYPE" "UNC5A WILD-TYPE" "UNC5A WILD-TYPE" "UNC5A WILD-TYPE" 
     TCGA-US-A77J 
"UNC5A WILD-TYPE" 
[1] "hr=" "2.3"
D323V2, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  UNC5A MUTATED          0        1         1         3         0        0
  UNC5A WILD-TYPE        1        3        10        48         2        3
D323V3, multiclass
                 vv
clus              T1+T2 T3+T4
  UNC5A MUTATED       1     4
  UNC5A WILD-TYPE     5    62
D323V4, multiclass
       clus
vv      UNC5A MUTATED UNC5A WILD-TYPE
  T1+T2             1               5
  T3+T4             4              62
D323V5, binary
                 cls
clus               0  1
  UNC5A MUTATED    2  3
  UNC5A WILD-TYPE 15 51
[1] "tbl2"
                 cls
clus              [,1] [,2]
  UNC5A MUTATED      2    3
  UNC5A WILD-TYPE   15   51
   clus
vv  UNC5A MUTATED UNC5A WILD-TYPE
  0             2              15
  1             3              51
                 vv
clus              M0 M1 MX
  UNC5A MUTATED    5  0  0
  UNC5A WILD-TYPE 34  3 30
D323V6, multiclass
    clus
vv   UNC5A MUTATED UNC5A WILD-TYPE
  M0             5              34
  M1             0               3
  MX             0              30
D323V7, binary
                 cls
clus               0  1
  UNC5A MUTATED    3  2
  UNC5A WILD-TYPE 33 34
[1] "tbl2"
                 cls
clus              [,1] [,2]
  UNC5A MUTATED      3    2
  UNC5A WILD-TYPE   33   34
        clus
vv       UNC5A MUTATED UNC5A WILD-TYPE
  FEMALE             3              33
  MALE               2              34
                 vv
clus              PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  UNC5A MUTATED                                     5
  UNC5A WILD-TYPE                                  60
                 vv
clus              PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  UNC5A MUTATED                                       0
  UNC5A WILD-TYPE                                     4
                 vv
clus              PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  UNC5A MUTATED                                                  0
  UNC5A WILD-TYPE                                                2
D323V8, multiclass
                                                  clus
vv                                                 UNC5A MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                          5
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                        0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA             0
                                                  clus
vv                                                 UNC5A WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                           60
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                          4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA               2
D323V9, continuous
[1] "Remove cluster labels:" "UNC5A MUTATED"         
clus
  UNC5A MUTATED UNC5A WILD-TYPE 
              2              20 
     TCGA-FB-A4P5      TCGA-FB-A4P6      TCGA-FB-A5VM      TCGA-FB-A78T 
"UNC5A WILD-TYPE" "UNC5A WILD-TYPE" "UNC5A WILD-TYPE" "UNC5A WILD-TYPE" 
     TCGA-FB-A7DR      TCGA-H6-8124      TCGA-H6-A45N      TCGA-H8-A6C1 
"UNC5A WILD-TYPE" "UNC5A WILD-TYPE" "UNC5A WILD-TYPE" "UNC5A WILD-TYPE" 
     TCGA-IB-7644      TCGA-IB-7649      TCGA-IB-7885      TCGA-IB-7886 
"UNC5A WILD-TYPE" "UNC5A WILD-TYPE" "UNC5A WILD-TYPE" "UNC5A WILD-TYPE" 
     TCGA-IB-7887      TCGA-IB-7891      TCGA-IB-8126      TCGA-IB-8127 
"UNC5A WILD-TYPE" "UNC5A WILD-TYPE" "UNC5A WILD-TYPE" "UNC5A WILD-TYPE" 
     TCGA-IB-A5SS      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"UNC5A WILD-TYPE" "UNC5A WILD-TYPE" "UNC5A WILD-TYPE" "UNC5A WILD-TYPE" 
D323V10, continuous
[1] "Remove cluster labels:" "UNC5A MUTATED"         
clus
  UNC5A MUTATED UNC5A WILD-TYPE 
              1              18 
     TCGA-FB-A4P5      TCGA-FB-A4P6      TCGA-FB-A5VM      TCGA-FB-A78T 
"UNC5A WILD-TYPE" "UNC5A WILD-TYPE" "UNC5A WILD-TYPE" "UNC5A WILD-TYPE" 
     TCGA-FB-A7DR      TCGA-H6-8124      TCGA-H8-A6C1      TCGA-IB-7644 
"UNC5A WILD-TYPE" "UNC5A WILD-TYPE" "UNC5A WILD-TYPE" "UNC5A WILD-TYPE" 
     TCGA-IB-7649      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7891 
"UNC5A WILD-TYPE" "UNC5A WILD-TYPE" "UNC5A WILD-TYPE" "UNC5A WILD-TYPE" 
     TCGA-IB-8126      TCGA-IB-8127      TCGA-IB-A5SS      TCGA-IB-A6UG 
"UNC5A WILD-TYPE" "UNC5A WILD-TYPE" "UNC5A WILD-TYPE" "UNC5A WILD-TYPE" 
     TCGA-LB-A7SX      TCGA-OE-A75W 
"UNC5A WILD-TYPE" "UNC5A WILD-TYPE" 
                 vv
clus              R0 R1 RX
  UNC5A MUTATED    4  1  0
  UNC5A WILD-TYPE 38 23  2
D323V11, multiclass
    clus
vv   UNC5A MUTATED UNC5A WILD-TYPE
  R0             4              38
  R1             1              23
  RX             0               2
D323V12, continuous

Clustering(324) Variable = CCDC88A MUTATION ANALYSIS
D324V1, survival
                   sevent
clus2                0  1
  CCDC88A MUTATED    4  0
  CCDC88A WILD-TYPE 36 29
  CCDC88A MUTATED CCDC88A WILD-TYPE 
                4                65 
  CCDC88A MUTATED CCDC88A WILD-TYPE 
                0                29 
$`CCDC88A MUTATED`
TCGA-F2-A44H TCGA-HZ-8315 TCGA-HZ-A4BH TCGA-IB-7885 
       19.27         0.92         6.38        27.98 

$`CCDC88A WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-FB-A4P5 
       10.98         9.70        11.84         7.10         5.03         0.13 
TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR TCGA-FZ-5920 
       11.93        12.66         2.47         0.03         5.46         2.01 
TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7289 
       36.20        20.81        12.89         7.66        13.02         7.89 
TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 
        0.92         0.66         0.13         0.26        12.13        11.87 
TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8317 
        0.26         0.62         0.79         0.69         3.95         0.53 
TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BK TCGA-IB-7644 
        0.16         2.99         0.76         0.95         1.51        11.41 
TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7651 TCGA-IB-7652 
       49.38         4.77        21.90        15.35        19.82        15.65 
TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 
        4.04         3.62        43.79        15.81        19.66        16.04 
TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP 
        3.85        15.98         0.56        17.16        10.82         9.86 
TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W 
        7.20        15.12         0.26         1.35         4.18         3.62 
TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
        8.12        13.68        16.80        14.14        18.67 

  CCDC88A MUTATED CCDC88A WILD-TYPE 
             0.92              0.03 
  CCDC88A MUTATED CCDC88A WILD-TYPE 
            27.98             49.38 
  CCDC88A MUTATED CCDC88A WILD-TYPE 
           12.825             7.660 
[1] "0.9 - 28.0 (12.8)" "0.0 - 49.4 (7.7)" 
       TCGA-F2-6879        TCGA-F2-6880        TCGA-F2-7273        TCGA-F2-7276 
"CCDC88A WILD-TYPE" "CCDC88A WILD-TYPE" "CCDC88A WILD-TYPE" "CCDC88A WILD-TYPE" 
       TCGA-F2-A44G        TCGA-F2-A44H        TCGA-FB-A4P5        TCGA-FB-A4P6 
"CCDC88A WILD-TYPE"   "CCDC88A MUTATED" "CCDC88A WILD-TYPE" "CCDC88A WILD-TYPE" 
       TCGA-FB-A545        TCGA-FB-A5VM        TCGA-FB-A78T        TCGA-FB-A7DR 
"CCDC88A WILD-TYPE" "CCDC88A WILD-TYPE" "CCDC88A WILD-TYPE" "CCDC88A WILD-TYPE" 
       TCGA-FZ-5920        TCGA-FZ-5922        TCGA-FZ-5923        TCGA-H6-8124 
"CCDC88A WILD-TYPE" "CCDC88A WILD-TYPE" "CCDC88A WILD-TYPE" "CCDC88A WILD-TYPE" 
       TCGA-H6-A45N        TCGA-H8-A6C1        TCGA-HZ-7289        TCGA-HZ-7918 
"CCDC88A WILD-TYPE" "CCDC88A WILD-TYPE" "CCDC88A WILD-TYPE" "CCDC88A WILD-TYPE" 
       TCGA-HZ-7919        TCGA-HZ-7922        TCGA-HZ-7923        TCGA-HZ-7924 
"CCDC88A WILD-TYPE" "CCDC88A WILD-TYPE" "CCDC88A WILD-TYPE" "CCDC88A WILD-TYPE" 
       TCGA-HZ-7925        TCGA-HZ-7926        TCGA-HZ-8001        TCGA-HZ-8002 
"CCDC88A WILD-TYPE" "CCDC88A WILD-TYPE" "CCDC88A WILD-TYPE" "CCDC88A WILD-TYPE" 
       TCGA-HZ-8003        TCGA-HZ-8005        TCGA-HZ-8315        TCGA-HZ-8317 
"CCDC88A WILD-TYPE" "CCDC88A WILD-TYPE"   "CCDC88A MUTATED" "CCDC88A WILD-TYPE" 
       TCGA-HZ-8636        TCGA-HZ-8638        TCGA-HZ-A49G        TCGA-HZ-A49H 
"CCDC88A WILD-TYPE" "CCDC88A WILD-TYPE" "CCDC88A WILD-TYPE" "CCDC88A WILD-TYPE" 
       TCGA-HZ-A4BH        TCGA-HZ-A4BK        TCGA-IB-7644        TCGA-IB-7645 
  "CCDC88A MUTATED" "CCDC88A WILD-TYPE" "CCDC88A WILD-TYPE" "CCDC88A WILD-TYPE" 
       TCGA-IB-7646        TCGA-IB-7647        TCGA-IB-7649        TCGA-IB-7651 
"CCDC88A WILD-TYPE" "CCDC88A WILD-TYPE" "CCDC88A WILD-TYPE" "CCDC88A WILD-TYPE" 
       TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-7886        TCGA-IB-7887 
"CCDC88A WILD-TYPE"   "CCDC88A MUTATED" "CCDC88A WILD-TYPE" "CCDC88A WILD-TYPE" 
       TCGA-IB-7888        TCGA-IB-7889        TCGA-IB-7890        TCGA-IB-7891 
"CCDC88A WILD-TYPE" "CCDC88A WILD-TYPE" "CCDC88A WILD-TYPE" "CCDC88A WILD-TYPE" 
       TCGA-IB-7893        TCGA-IB-7897        TCGA-IB-8126        TCGA-IB-8127 
"CCDC88A WILD-TYPE" "CCDC88A WILD-TYPE" "CCDC88A WILD-TYPE" "CCDC88A WILD-TYPE" 
       TCGA-IB-A5SO        TCGA-IB-A5SP        TCGA-IB-A5SQ        TCGA-IB-A5SS 
"CCDC88A WILD-TYPE" "CCDC88A WILD-TYPE" "CCDC88A WILD-TYPE" "CCDC88A WILD-TYPE" 
       TCGA-IB-A5ST        TCGA-IB-A6UG        TCGA-LB-A7SX        TCGA-OE-A75W 
"CCDC88A WILD-TYPE" "CCDC88A WILD-TYPE" "CCDC88A WILD-TYPE" "CCDC88A WILD-TYPE" 
       TCGA-PZ-A5RE        TCGA-Q3-A5QY        TCGA-US-A779        TCGA-US-A77E 
"CCDC88A WILD-TYPE" "CCDC88A WILD-TYPE" "CCDC88A WILD-TYPE" "CCDC88A WILD-TYPE" 
       TCGA-US-A77J 
"CCDC88A WILD-TYPE" 
       TCGA-F2-6879        TCGA-F2-6880        TCGA-F2-7273        TCGA-F2-7276 
"CCDC88A WILD-TYPE" "CCDC88A WILD-TYPE" "CCDC88A WILD-TYPE" "CCDC88A WILD-TYPE" 
       TCGA-F2-A44G        TCGA-F2-A44H        TCGA-FB-A4P5        TCGA-FB-A4P6 
"CCDC88A WILD-TYPE"   "CCDC88A MUTATED" "CCDC88A WILD-TYPE" "CCDC88A WILD-TYPE" 
       TCGA-FB-A545        TCGA-FB-A5VM        TCGA-FB-A78T        TCGA-FB-A7DR 
"CCDC88A WILD-TYPE" "CCDC88A WILD-TYPE" "CCDC88A WILD-TYPE" "CCDC88A WILD-TYPE" 
       TCGA-FZ-5920        TCGA-FZ-5922        TCGA-FZ-5923        TCGA-H6-8124 
"CCDC88A WILD-TYPE" "CCDC88A WILD-TYPE" "CCDC88A WILD-TYPE" "CCDC88A WILD-TYPE" 
       TCGA-H6-A45N        TCGA-H8-A6C1        TCGA-HZ-7289        TCGA-HZ-7918 
"CCDC88A WILD-TYPE" "CCDC88A WILD-TYPE" "CCDC88A WILD-TYPE" "CCDC88A WILD-TYPE" 
       TCGA-HZ-7919        TCGA-HZ-7922        TCGA-HZ-7923        TCGA-HZ-7924 
"CCDC88A WILD-TYPE" "CCDC88A WILD-TYPE" "CCDC88A WILD-TYPE" "CCDC88A WILD-TYPE" 
       TCGA-HZ-7925        TCGA-HZ-7926        TCGA-HZ-8001        TCGA-HZ-8002 
"CCDC88A WILD-TYPE" "CCDC88A WILD-TYPE" "CCDC88A WILD-TYPE" "CCDC88A WILD-TYPE" 
       TCGA-HZ-8003        TCGA-HZ-8005        TCGA-HZ-8315        TCGA-HZ-8317 
"CCDC88A WILD-TYPE" "CCDC88A WILD-TYPE"   "CCDC88A MUTATED" "CCDC88A WILD-TYPE" 
       TCGA-HZ-8636        TCGA-HZ-8638        TCGA-HZ-A49G        TCGA-HZ-A49H 
"CCDC88A WILD-TYPE" "CCDC88A WILD-TYPE" "CCDC88A WILD-TYPE" "CCDC88A WILD-TYPE" 
       TCGA-HZ-A4BH        TCGA-HZ-A4BK        TCGA-IB-7644        TCGA-IB-7645 
  "CCDC88A MUTATED" "CCDC88A WILD-TYPE" "CCDC88A WILD-TYPE" "CCDC88A WILD-TYPE" 
       TCGA-IB-7646        TCGA-IB-7647        TCGA-IB-7649        TCGA-IB-7651 
"CCDC88A WILD-TYPE" "CCDC88A WILD-TYPE" "CCDC88A WILD-TYPE" "CCDC88A WILD-TYPE" 
       TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-7886        TCGA-IB-7887 
"CCDC88A WILD-TYPE"   "CCDC88A MUTATED" "CCDC88A WILD-TYPE" "CCDC88A WILD-TYPE" 
       TCGA-IB-7888        TCGA-IB-7889        TCGA-IB-7890        TCGA-IB-7891 
"CCDC88A WILD-TYPE" "CCDC88A WILD-TYPE" "CCDC88A WILD-TYPE" "CCDC88A WILD-TYPE" 
       TCGA-IB-7893        TCGA-IB-7897        TCGA-IB-8126        TCGA-IB-8127 
"CCDC88A WILD-TYPE" "CCDC88A WILD-TYPE" "CCDC88A WILD-TYPE" "CCDC88A WILD-TYPE" 
       TCGA-IB-A5SO        TCGA-IB-A5SP        TCGA-IB-A5SQ        TCGA-IB-A5SS 
"CCDC88A WILD-TYPE" "CCDC88A WILD-TYPE" "CCDC88A WILD-TYPE" "CCDC88A WILD-TYPE" 
       TCGA-IB-A5ST        TCGA-IB-A6UG        TCGA-LB-A7SX        TCGA-OE-A75W 
"CCDC88A WILD-TYPE" "CCDC88A WILD-TYPE" "CCDC88A WILD-TYPE" "CCDC88A WILD-TYPE" 
       TCGA-PZ-A5RE        TCGA-Q3-A5QY        TCGA-US-A779        TCGA-US-A77E 
"CCDC88A WILD-TYPE" "CCDC88A WILD-TYPE" "CCDC88A WILD-TYPE" "CCDC88A WILD-TYPE" 
       TCGA-US-A77J 
"CCDC88A WILD-TYPE" 
       TCGA-F2-6879        TCGA-F2-6880        TCGA-F2-7273        TCGA-F2-7276 
"CCDC88A WILD-TYPE" "CCDC88A WILD-TYPE" "CCDC88A WILD-TYPE" "CCDC88A WILD-TYPE" 
       TCGA-F2-A44G        TCGA-F2-A44H        TCGA-FB-A4P5        TCGA-FB-A4P6 
"CCDC88A WILD-TYPE"   "CCDC88A MUTATED" "CCDC88A WILD-TYPE" "CCDC88A WILD-TYPE" 
       TCGA-FB-A545        TCGA-FB-A5VM        TCGA-FB-A78T        TCGA-FB-A7DR 
"CCDC88A WILD-TYPE" "CCDC88A WILD-TYPE" "CCDC88A WILD-TYPE" "CCDC88A WILD-TYPE" 
       TCGA-FZ-5920        TCGA-FZ-5922        TCGA-FZ-5923        TCGA-H6-8124 
"CCDC88A WILD-TYPE" "CCDC88A WILD-TYPE" "CCDC88A WILD-TYPE" "CCDC88A WILD-TYPE" 
       TCGA-H6-A45N        TCGA-H8-A6C1        TCGA-HZ-7289        TCGA-HZ-7918 
"CCDC88A WILD-TYPE" "CCDC88A WILD-TYPE" "CCDC88A WILD-TYPE" "CCDC88A WILD-TYPE" 
       TCGA-HZ-7919        TCGA-HZ-7922        TCGA-HZ-7923        TCGA-HZ-7924 
"CCDC88A WILD-TYPE" "CCDC88A WILD-TYPE" "CCDC88A WILD-TYPE" "CCDC88A WILD-TYPE" 
       TCGA-HZ-7925        TCGA-HZ-7926        TCGA-HZ-8001        TCGA-HZ-8002 
"CCDC88A WILD-TYPE" "CCDC88A WILD-TYPE" "CCDC88A WILD-TYPE" "CCDC88A WILD-TYPE" 
       TCGA-HZ-8003        TCGA-HZ-8005        TCGA-HZ-8315        TCGA-HZ-8317 
"CCDC88A WILD-TYPE" "CCDC88A WILD-TYPE"   "CCDC88A MUTATED" "CCDC88A WILD-TYPE" 
       TCGA-HZ-8636        TCGA-HZ-8638        TCGA-HZ-A49G        TCGA-HZ-A49H 
"CCDC88A WILD-TYPE" "CCDC88A WILD-TYPE" "CCDC88A WILD-TYPE" "CCDC88A WILD-TYPE" 
       TCGA-HZ-A4BH        TCGA-HZ-A4BK        TCGA-IB-7644        TCGA-IB-7645 
  "CCDC88A MUTATED" "CCDC88A WILD-TYPE" "CCDC88A WILD-TYPE" "CCDC88A WILD-TYPE" 
       TCGA-IB-7646        TCGA-IB-7647        TCGA-IB-7649        TCGA-IB-7651 
"CCDC88A WILD-TYPE" "CCDC88A WILD-TYPE" "CCDC88A WILD-TYPE" "CCDC88A WILD-TYPE" 
       TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-7886        TCGA-IB-7887 
"CCDC88A WILD-TYPE"   "CCDC88A MUTATED" "CCDC88A WILD-TYPE" "CCDC88A WILD-TYPE" 
       TCGA-IB-7888        TCGA-IB-7889        TCGA-IB-7890        TCGA-IB-7891 
"CCDC88A WILD-TYPE" "CCDC88A WILD-TYPE" "CCDC88A WILD-TYPE" "CCDC88A WILD-TYPE" 
       TCGA-IB-7893        TCGA-IB-7897        TCGA-IB-8126        TCGA-IB-8127 
"CCDC88A WILD-TYPE" "CCDC88A WILD-TYPE" "CCDC88A WILD-TYPE" "CCDC88A WILD-TYPE" 
       TCGA-IB-A5SO        TCGA-IB-A5SP        TCGA-IB-A5SQ        TCGA-IB-A5SS 
"CCDC88A WILD-TYPE" "CCDC88A WILD-TYPE" "CCDC88A WILD-TYPE" "CCDC88A WILD-TYPE" 
       TCGA-IB-A5ST        TCGA-IB-A6UG        TCGA-LB-A7SX        TCGA-OE-A75W 
"CCDC88A WILD-TYPE" "CCDC88A WILD-TYPE" "CCDC88A WILD-TYPE" "CCDC88A WILD-TYPE" 
       TCGA-PZ-A5RE        TCGA-Q3-A5QY        TCGA-US-A779        TCGA-US-A77E 
"CCDC88A WILD-TYPE" "CCDC88A WILD-TYPE" "CCDC88A WILD-TYPE" "CCDC88A WILD-TYPE" 
       TCGA-US-A77J 
"CCDC88A WILD-TYPE" 
[1] "hr="     "8.1e+07"
D324V2, continuous
                   vv
clus                STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  CCDC88A MUTATED          0        0         2         2         0        0
  CCDC88A WILD-TYPE        1        4         9        49         2        3
D324V3, multiclass
                   vv
clus                T1+T2 T3+T4
  CCDC88A MUTATED       0     4
  CCDC88A WILD-TYPE     6    62
D324V4, multiclass
       clus
vv      CCDC88A MUTATED CCDC88A WILD-TYPE
  T1+T2               0                 6
  T3+T4               4                62
D324V5, binary
                   cls
clus                 0  1
  CCDC88A MUTATED    2  2
  CCDC88A WILD-TYPE 15 52
[1] "tbl2"
                   cls
clus                [,1] [,2]
  CCDC88A MUTATED      2    2
  CCDC88A WILD-TYPE   15   52
   clus
vv  CCDC88A MUTATED CCDC88A WILD-TYPE
  0               2                15
  1               2                52
                   vv
clus                M0 M1 MX
  CCDC88A MUTATED    2  0  2
  CCDC88A WILD-TYPE 37  3 28
D324V6, multiclass
    clus
vv   CCDC88A MUTATED CCDC88A WILD-TYPE
  M0               2                37
  M1               0                 3
  MX               2                28
D324V7, binary
                   cls
clus                 0  1
  CCDC88A MUTATED    2  2
  CCDC88A WILD-TYPE 34 34
[1] "tbl2"
                   cls
clus                [,1] [,2]
  CCDC88A MUTATED      2    2
  CCDC88A WILD-TYPE   34   34
        clus
vv       CCDC88A MUTATED CCDC88A WILD-TYPE
  FEMALE               2                34
  MALE                 2                34
                   vv
clus                PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  CCDC88A MUTATED                                     4
  CCDC88A WILD-TYPE                                  61
                   vv
clus                PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  CCDC88A MUTATED                                       0
  CCDC88A WILD-TYPE                                     4
                   vv
clus                PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  CCDC88A MUTATED                                                  0
  CCDC88A WILD-TYPE                                                2
D324V8, multiclass
                                                  clus
vv                                                 CCDC88A MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                            4
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                          0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA               0
                                                  clus
vv                                                 CCDC88A WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                             61
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                            4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                 2
D324V9, continuous
[1] "Remove cluster labels:" "CCDC88A MUTATED"       
clus
  CCDC88A MUTATED CCDC88A WILD-TYPE 
                1                21 
       TCGA-F2-6880        TCGA-FB-A4P5        TCGA-FB-A4P6        TCGA-FB-A5VM 
"CCDC88A WILD-TYPE" "CCDC88A WILD-TYPE" "CCDC88A WILD-TYPE" "CCDC88A WILD-TYPE" 
       TCGA-FB-A78T        TCGA-FB-A7DR        TCGA-H6-8124        TCGA-H6-A45N 
"CCDC88A WILD-TYPE" "CCDC88A WILD-TYPE" "CCDC88A WILD-TYPE" "CCDC88A WILD-TYPE" 
       TCGA-H8-A6C1        TCGA-IB-7644        TCGA-IB-7649        TCGA-IB-7651 
"CCDC88A WILD-TYPE" "CCDC88A WILD-TYPE" "CCDC88A WILD-TYPE" "CCDC88A WILD-TYPE" 
       TCGA-IB-7886        TCGA-IB-7887        TCGA-IB-7891        TCGA-IB-8126 
"CCDC88A WILD-TYPE" "CCDC88A WILD-TYPE" "CCDC88A WILD-TYPE" "CCDC88A WILD-TYPE" 
       TCGA-IB-8127        TCGA-IB-A5SS        TCGA-IB-A6UG        TCGA-LB-A7SX 
"CCDC88A WILD-TYPE" "CCDC88A WILD-TYPE" "CCDC88A WILD-TYPE" "CCDC88A WILD-TYPE" 
       TCGA-OE-A75W 
"CCDC88A WILD-TYPE" 
D324V10, continuous
[1] "Remove cluster labels:" "CCDC88A MUTATED"       
clus
  CCDC88A MUTATED CCDC88A WILD-TYPE 
                1                18 
       TCGA-FB-A4P5        TCGA-FB-A4P6        TCGA-FB-A5VM        TCGA-FB-A78T 
"CCDC88A WILD-TYPE" "CCDC88A WILD-TYPE" "CCDC88A WILD-TYPE" "CCDC88A WILD-TYPE" 
       TCGA-FB-A7DR        TCGA-H6-8124        TCGA-H8-A6C1        TCGA-IB-7644 
"CCDC88A WILD-TYPE" "CCDC88A WILD-TYPE" "CCDC88A WILD-TYPE" "CCDC88A WILD-TYPE" 
       TCGA-IB-7649        TCGA-IB-7651        TCGA-IB-7886        TCGA-IB-7891 
"CCDC88A WILD-TYPE" "CCDC88A WILD-TYPE" "CCDC88A WILD-TYPE" "CCDC88A WILD-TYPE" 
       TCGA-IB-8126        TCGA-IB-8127        TCGA-IB-A5SS        TCGA-IB-A6UG 
"CCDC88A WILD-TYPE" "CCDC88A WILD-TYPE" "CCDC88A WILD-TYPE" "CCDC88A WILD-TYPE" 
       TCGA-LB-A7SX        TCGA-OE-A75W 
"CCDC88A WILD-TYPE" "CCDC88A WILD-TYPE" 
                   vv
clus                R0 R1 RX
  CCDC88A MUTATED    2  2  0
  CCDC88A WILD-TYPE 40 22  2
D324V11, multiclass
    clus
vv   CCDC88A MUTATED CCDC88A WILD-TYPE
  R0               2                40
  R1               2                22
  RX               0                 2
D324V12, continuous

Clustering(325) Variable = NKAP MUTATION ANALYSIS
D325V1, survival
                sevent
clus2             0  1
  NKAP MUTATED    2  2
  NKAP WILD-TYPE 38 27
  NKAP MUTATED NKAP WILD-TYPE 
             4             65 
  NKAP MUTATED NKAP WILD-TYPE 
             2             27 
$`NKAP MUTATED`
TCGA-HZ-8001 TCGA-HZ-8315 TCGA-IB-7651 TCGA-IB-7887 
        0.62         0.92        19.82         3.62 

$`NKAP WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P5 TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR 
        0.13        11.93        12.66         2.47         0.03         5.46 
TCGA-FZ-5920 TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 
        2.01        36.20        20.81        12.89         7.66        13.02 
TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 
        7.89         0.92         0.66         0.13         0.26        12.13 
TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8317 
       11.87         0.26         0.79         0.69         3.95         0.53 
TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK 
        0.16         2.99         0.76         0.95         6.38         1.51 
TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7652 
       11.41        49.38         4.77        21.90        15.35        15.65 
TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 
       27.98         4.04        43.79        15.81        19.66        16.04 
TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP 
        3.85        15.98         0.56        17.16        10.82         9.86 
TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W 
        7.20        15.12         0.26         1.35         4.18         3.62 
TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
        8.12        13.68        16.80        14.14        18.67 

  NKAP MUTATED NKAP WILD-TYPE 
          0.62           0.03 
  NKAP MUTATED NKAP WILD-TYPE 
         19.82          49.38 
  NKAP MUTATED NKAP WILD-TYPE 
          2.27           7.89 
[1] "0.6 - 19.8 (2.3)" "0.0 - 49.4 (7.9)"
    TCGA-F2-6879     TCGA-F2-6880     TCGA-F2-7273     TCGA-F2-7276 
"NKAP WILD-TYPE" "NKAP WILD-TYPE" "NKAP WILD-TYPE" "NKAP WILD-TYPE" 
    TCGA-F2-A44G     TCGA-F2-A44H     TCGA-FB-A4P5     TCGA-FB-A4P6 
"NKAP WILD-TYPE" "NKAP WILD-TYPE" "NKAP WILD-TYPE" "NKAP WILD-TYPE" 
    TCGA-FB-A545     TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-FB-A7DR 
"NKAP WILD-TYPE" "NKAP WILD-TYPE" "NKAP WILD-TYPE" "NKAP WILD-TYPE" 
    TCGA-FZ-5920     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-H6-8124 
"NKAP WILD-TYPE" "NKAP WILD-TYPE" "NKAP WILD-TYPE" "NKAP WILD-TYPE" 
    TCGA-H6-A45N     TCGA-H8-A6C1     TCGA-HZ-7289     TCGA-HZ-7918 
"NKAP WILD-TYPE" "NKAP WILD-TYPE" "NKAP WILD-TYPE" "NKAP WILD-TYPE" 
    TCGA-HZ-7919     TCGA-HZ-7922     TCGA-HZ-7923     TCGA-HZ-7924 
"NKAP WILD-TYPE" "NKAP WILD-TYPE" "NKAP WILD-TYPE" "NKAP WILD-TYPE" 
    TCGA-HZ-7925     TCGA-HZ-7926     TCGA-HZ-8001     TCGA-HZ-8002 
"NKAP WILD-TYPE" "NKAP WILD-TYPE"   "NKAP MUTATED" "NKAP WILD-TYPE" 
    TCGA-HZ-8003     TCGA-HZ-8005     TCGA-HZ-8315     TCGA-HZ-8317 
"NKAP WILD-TYPE" "NKAP WILD-TYPE"   "NKAP MUTATED" "NKAP WILD-TYPE" 
    TCGA-HZ-8636     TCGA-HZ-8638     TCGA-HZ-A49G     TCGA-HZ-A49H 
"NKAP WILD-TYPE" "NKAP WILD-TYPE" "NKAP WILD-TYPE" "NKAP WILD-TYPE" 
    TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-IB-7644     TCGA-IB-7645 
"NKAP WILD-TYPE" "NKAP WILD-TYPE" "NKAP WILD-TYPE" "NKAP WILD-TYPE" 
    TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7651 
"NKAP WILD-TYPE" "NKAP WILD-TYPE" "NKAP WILD-TYPE"   "NKAP MUTATED" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887 
"NKAP WILD-TYPE" "NKAP WILD-TYPE" "NKAP WILD-TYPE"   "NKAP MUTATED" 
    TCGA-IB-7888     TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891 
"NKAP WILD-TYPE" "NKAP WILD-TYPE" "NKAP WILD-TYPE" "NKAP WILD-TYPE" 
    TCGA-IB-7893     TCGA-IB-7897     TCGA-IB-8126     TCGA-IB-8127 
"NKAP WILD-TYPE" "NKAP WILD-TYPE" "NKAP WILD-TYPE" "NKAP WILD-TYPE" 
    TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS 
"NKAP WILD-TYPE" "NKAP WILD-TYPE" "NKAP WILD-TYPE" "NKAP WILD-TYPE" 
    TCGA-IB-A5ST     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
"NKAP WILD-TYPE" "NKAP WILD-TYPE" "NKAP WILD-TYPE" "NKAP WILD-TYPE" 
    TCGA-PZ-A5RE     TCGA-Q3-A5QY     TCGA-US-A779     TCGA-US-A77E 
"NKAP WILD-TYPE" "NKAP WILD-TYPE" "NKAP WILD-TYPE" "NKAP WILD-TYPE" 
    TCGA-US-A77J 
"NKAP WILD-TYPE" 
    TCGA-F2-6879     TCGA-F2-6880     TCGA-F2-7273     TCGA-F2-7276 
"NKAP WILD-TYPE" "NKAP WILD-TYPE" "NKAP WILD-TYPE" "NKAP WILD-TYPE" 
    TCGA-F2-A44G     TCGA-F2-A44H     TCGA-FB-A4P5     TCGA-FB-A4P6 
"NKAP WILD-TYPE" "NKAP WILD-TYPE" "NKAP WILD-TYPE" "NKAP WILD-TYPE" 
    TCGA-FB-A545     TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-FB-A7DR 
"NKAP WILD-TYPE" "NKAP WILD-TYPE" "NKAP WILD-TYPE" "NKAP WILD-TYPE" 
    TCGA-FZ-5920     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-H6-8124 
"NKAP WILD-TYPE" "NKAP WILD-TYPE" "NKAP WILD-TYPE" "NKAP WILD-TYPE" 
    TCGA-H6-A45N     TCGA-H8-A6C1     TCGA-HZ-7289     TCGA-HZ-7918 
"NKAP WILD-TYPE" "NKAP WILD-TYPE" "NKAP WILD-TYPE" "NKAP WILD-TYPE" 
    TCGA-HZ-7919     TCGA-HZ-7922     TCGA-HZ-7923     TCGA-HZ-7924 
"NKAP WILD-TYPE" "NKAP WILD-TYPE" "NKAP WILD-TYPE" "NKAP WILD-TYPE" 
    TCGA-HZ-7925     TCGA-HZ-7926     TCGA-HZ-8001     TCGA-HZ-8002 
"NKAP WILD-TYPE" "NKAP WILD-TYPE"   "NKAP MUTATED" "NKAP WILD-TYPE" 
    TCGA-HZ-8003     TCGA-HZ-8005     TCGA-HZ-8315     TCGA-HZ-8317 
"NKAP WILD-TYPE" "NKAP WILD-TYPE"   "NKAP MUTATED" "NKAP WILD-TYPE" 
    TCGA-HZ-8636     TCGA-HZ-8638     TCGA-HZ-A49G     TCGA-HZ-A49H 
"NKAP WILD-TYPE" "NKAP WILD-TYPE" "NKAP WILD-TYPE" "NKAP WILD-TYPE" 
    TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-IB-7644     TCGA-IB-7645 
"NKAP WILD-TYPE" "NKAP WILD-TYPE" "NKAP WILD-TYPE" "NKAP WILD-TYPE" 
    TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7651 
"NKAP WILD-TYPE" "NKAP WILD-TYPE" "NKAP WILD-TYPE"   "NKAP MUTATED" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887 
"NKAP WILD-TYPE" "NKAP WILD-TYPE" "NKAP WILD-TYPE"   "NKAP MUTATED" 
    TCGA-IB-7888     TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891 
"NKAP WILD-TYPE" "NKAP WILD-TYPE" "NKAP WILD-TYPE" "NKAP WILD-TYPE" 
    TCGA-IB-7893     TCGA-IB-7897     TCGA-IB-8126     TCGA-IB-8127 
"NKAP WILD-TYPE" "NKAP WILD-TYPE" "NKAP WILD-TYPE" "NKAP WILD-TYPE" 
    TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS 
"NKAP WILD-TYPE" "NKAP WILD-TYPE" "NKAP WILD-TYPE" "NKAP WILD-TYPE" 
    TCGA-IB-A5ST     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
"NKAP WILD-TYPE" "NKAP WILD-TYPE" "NKAP WILD-TYPE" "NKAP WILD-TYPE" 
    TCGA-PZ-A5RE     TCGA-Q3-A5QY     TCGA-US-A779     TCGA-US-A77E 
"NKAP WILD-TYPE" "NKAP WILD-TYPE" "NKAP WILD-TYPE" "NKAP WILD-TYPE" 
    TCGA-US-A77J 
"NKAP WILD-TYPE" 
    TCGA-F2-6879     TCGA-F2-6880     TCGA-F2-7273     TCGA-F2-7276 
"NKAP WILD-TYPE" "NKAP WILD-TYPE" "NKAP WILD-TYPE" "NKAP WILD-TYPE" 
    TCGA-F2-A44G     TCGA-F2-A44H     TCGA-FB-A4P5     TCGA-FB-A4P6 
"NKAP WILD-TYPE" "NKAP WILD-TYPE" "NKAP WILD-TYPE" "NKAP WILD-TYPE" 
    TCGA-FB-A545     TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-FB-A7DR 
"NKAP WILD-TYPE" "NKAP WILD-TYPE" "NKAP WILD-TYPE" "NKAP WILD-TYPE" 
    TCGA-FZ-5920     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-H6-8124 
"NKAP WILD-TYPE" "NKAP WILD-TYPE" "NKAP WILD-TYPE" "NKAP WILD-TYPE" 
    TCGA-H6-A45N     TCGA-H8-A6C1     TCGA-HZ-7289     TCGA-HZ-7918 
"NKAP WILD-TYPE" "NKAP WILD-TYPE" "NKAP WILD-TYPE" "NKAP WILD-TYPE" 
    TCGA-HZ-7919     TCGA-HZ-7922     TCGA-HZ-7923     TCGA-HZ-7924 
"NKAP WILD-TYPE" "NKAP WILD-TYPE" "NKAP WILD-TYPE" "NKAP WILD-TYPE" 
    TCGA-HZ-7925     TCGA-HZ-7926     TCGA-HZ-8001     TCGA-HZ-8002 
"NKAP WILD-TYPE" "NKAP WILD-TYPE"   "NKAP MUTATED" "NKAP WILD-TYPE" 
    TCGA-HZ-8003     TCGA-HZ-8005     TCGA-HZ-8315     TCGA-HZ-8317 
"NKAP WILD-TYPE" "NKAP WILD-TYPE"   "NKAP MUTATED" "NKAP WILD-TYPE" 
    TCGA-HZ-8636     TCGA-HZ-8638     TCGA-HZ-A49G     TCGA-HZ-A49H 
"NKAP WILD-TYPE" "NKAP WILD-TYPE" "NKAP WILD-TYPE" "NKAP WILD-TYPE" 
    TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-IB-7644     TCGA-IB-7645 
"NKAP WILD-TYPE" "NKAP WILD-TYPE" "NKAP WILD-TYPE" "NKAP WILD-TYPE" 
    TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7651 
"NKAP WILD-TYPE" "NKAP WILD-TYPE" "NKAP WILD-TYPE"   "NKAP MUTATED" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887 
"NKAP WILD-TYPE" "NKAP WILD-TYPE" "NKAP WILD-TYPE"   "NKAP MUTATED" 
    TCGA-IB-7888     TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891 
"NKAP WILD-TYPE" "NKAP WILD-TYPE" "NKAP WILD-TYPE" "NKAP WILD-TYPE" 
    TCGA-IB-7893     TCGA-IB-7897     TCGA-IB-8126     TCGA-IB-8127 
"NKAP WILD-TYPE" "NKAP WILD-TYPE" "NKAP WILD-TYPE" "NKAP WILD-TYPE" 
    TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS 
"NKAP WILD-TYPE" "NKAP WILD-TYPE" "NKAP WILD-TYPE" "NKAP WILD-TYPE" 
    TCGA-IB-A5ST     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
"NKAP WILD-TYPE" "NKAP WILD-TYPE" "NKAP WILD-TYPE" "NKAP WILD-TYPE" 
    TCGA-PZ-A5RE     TCGA-Q3-A5QY     TCGA-US-A779     TCGA-US-A77E 
"NKAP WILD-TYPE" "NKAP WILD-TYPE" "NKAP WILD-TYPE" "NKAP WILD-TYPE" 
    TCGA-US-A77J 
"NKAP WILD-TYPE" 
[1] "hr=" "1.7"
D325V2, continuous
                vv
clus             STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  NKAP MUTATED          0        0         1         2         1        0
  NKAP WILD-TYPE        1        4        10        49         1        3
D325V3, multiclass
                vv
clus             T1+T2 T3+T4
  NKAP MUTATED       0     4
  NKAP WILD-TYPE     6    62
D325V4, multiclass
       clus
vv      NKAP MUTATED NKAP WILD-TYPE
  T1+T2            0              6
  T3+T4            4             62
D325V5, binary
                cls
clus              0  1
  NKAP MUTATED    2  2
  NKAP WILD-TYPE 15 52
[1] "tbl2"
                cls
clus             [,1] [,2]
  NKAP MUTATED      2    2
  NKAP WILD-TYPE   15   52
   clus
vv  NKAP MUTATED NKAP WILD-TYPE
  0            2             15
  1            2             52
                vv
clus             M0 M1 MX
  NKAP MUTATED    2  0  2
  NKAP WILD-TYPE 37  3 28
D325V6, multiclass
    clus
vv   NKAP MUTATED NKAP WILD-TYPE
  M0            2             37
  M1            0              3
  MX            2             28
D325V7, binary
                cls
clus              0  1
  NKAP MUTATED    3  1
  NKAP WILD-TYPE 33 35
[1] "tbl2"
                cls
clus             [,1] [,2]
  NKAP MUTATED      3    1
  NKAP WILD-TYPE   33   35
        clus
vv       NKAP MUTATED NKAP WILD-TYPE
  FEMALE            3             33
  MALE              1             35
                vv
clus             PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  NKAP MUTATED                                     4
  NKAP WILD-TYPE                                  61
                vv
clus             PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  NKAP MUTATED                                       0
  NKAP WILD-TYPE                                     4
                vv
clus             PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  NKAP MUTATED                                                  0
  NKAP WILD-TYPE                                                2
D325V8, multiclass
                                                  clus
vv                                                 NKAP MUTATED NKAP WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                         4             61
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                       0              4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA            0              2
D325V9, continuous
[1] "Remove cluster labels:" "NKAP MUTATED"          
clus
  NKAP MUTATED NKAP WILD-TYPE 
             2             20 
    TCGA-F2-6880     TCGA-FB-A4P5     TCGA-FB-A4P6     TCGA-FB-A5VM 
"NKAP WILD-TYPE" "NKAP WILD-TYPE" "NKAP WILD-TYPE" "NKAP WILD-TYPE" 
    TCGA-FB-A78T     TCGA-FB-A7DR     TCGA-H6-8124     TCGA-H6-A45N 
"NKAP WILD-TYPE" "NKAP WILD-TYPE" "NKAP WILD-TYPE" "NKAP WILD-TYPE" 
    TCGA-H8-A6C1     TCGA-IB-7644     TCGA-IB-7649     TCGA-IB-7885 
"NKAP WILD-TYPE" "NKAP WILD-TYPE" "NKAP WILD-TYPE" "NKAP WILD-TYPE" 
    TCGA-IB-7886     TCGA-IB-7891     TCGA-IB-8126     TCGA-IB-8127 
"NKAP WILD-TYPE" "NKAP WILD-TYPE" "NKAP WILD-TYPE" "NKAP WILD-TYPE" 
    TCGA-IB-A5SS     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
"NKAP WILD-TYPE" "NKAP WILD-TYPE" "NKAP WILD-TYPE" "NKAP WILD-TYPE" 
D325V10, continuous
[1] "Remove cluster labels:" "NKAP MUTATED"          
clus
  NKAP MUTATED NKAP WILD-TYPE 
             1             18 
    TCGA-FB-A4P5     TCGA-FB-A4P6     TCGA-FB-A5VM     TCGA-FB-A78T 
"NKAP WILD-TYPE" "NKAP WILD-TYPE" "NKAP WILD-TYPE" "NKAP WILD-TYPE" 
    TCGA-FB-A7DR     TCGA-H6-8124     TCGA-H8-A6C1     TCGA-IB-7644 
"NKAP WILD-TYPE" "NKAP WILD-TYPE" "NKAP WILD-TYPE" "NKAP WILD-TYPE" 
    TCGA-IB-7649     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7891 
"NKAP WILD-TYPE" "NKAP WILD-TYPE" "NKAP WILD-TYPE" "NKAP WILD-TYPE" 
    TCGA-IB-8126     TCGA-IB-8127     TCGA-IB-A5SS     TCGA-IB-A6UG 
"NKAP WILD-TYPE" "NKAP WILD-TYPE" "NKAP WILD-TYPE" "NKAP WILD-TYPE" 
    TCGA-LB-A7SX     TCGA-OE-A75W 
"NKAP WILD-TYPE" "NKAP WILD-TYPE" 
                vv
clus             R0 R1 RX
  NKAP MUTATED    2  2  0
  NKAP WILD-TYPE 40 22  2
D325V11, multiclass
    clus
vv   NKAP MUTATED NKAP WILD-TYPE
  R0            2             40
  R1            2             22
  RX            0              2
D325V12, continuous

Clustering(326) Variable = PCOLCE2 MUTATION ANALYSIS
D326V1, survival
                   sevent
clus2                0  1
  PCOLCE2 MUTATED    4  2
  PCOLCE2 WILD-TYPE 36 27
  PCOLCE2 MUTATED PCOLCE2 WILD-TYPE 
                6                63 
  PCOLCE2 MUTATED PCOLCE2 WILD-TYPE 
                2                27 
$`PCOLCE2 MUTATED`
TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-A49G TCGA-IB-7647 TCGA-IB-7651 TCGA-IB-8127 
        0.26        12.13         0.76        21.90        19.82        17.16 

$`PCOLCE2 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P5 TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR 
        0.13        11.93        12.66         2.47         0.03         5.46 
TCGA-FZ-5920 TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 
        2.01        36.20        20.81        12.89         7.66        13.02 
TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7925 TCGA-HZ-7926 
        7.89         0.92         0.66         0.13        11.87         0.26 
TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 
        0.62         0.79         0.69         3.95         0.92         0.53 
TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 
        0.16         2.99         0.95         6.38         1.51        11.41 
TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7649 TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7886 
       49.38         4.77        15.35        15.65        27.98         4.04 
TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-7893 
        3.62        43.79        15.81        19.66        16.04         3.85 
TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS 
       15.98         0.56        10.82         9.86         7.20        15.12 
TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W TCGA-PZ-A5RE TCGA-Q3-A5QY 
        0.26         1.35         4.18         3.62         8.12        13.68 
TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
       16.80        14.14        18.67 

  PCOLCE2 MUTATED PCOLCE2 WILD-TYPE 
             0.26              0.03 
  PCOLCE2 MUTATED PCOLCE2 WILD-TYPE 
            21.90             49.38 
  PCOLCE2 MUTATED PCOLCE2 WILD-TYPE 
           14.645             7.200 
[1] "0.3 - 21.9 (14.6)" "0.0 - 49.4 (7.2)" 
       TCGA-F2-6879        TCGA-F2-6880        TCGA-F2-7273        TCGA-F2-7276 
"PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE" 
       TCGA-F2-A44G        TCGA-F2-A44H        TCGA-FB-A4P5        TCGA-FB-A4P6 
"PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE" 
       TCGA-FB-A545        TCGA-FB-A5VM        TCGA-FB-A78T        TCGA-FB-A7DR 
"PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE" 
       TCGA-FZ-5920        TCGA-FZ-5922        TCGA-FZ-5923        TCGA-H6-8124 
"PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE" 
       TCGA-H6-A45N        TCGA-H8-A6C1        TCGA-HZ-7289        TCGA-HZ-7918 
"PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE" 
       TCGA-HZ-7919        TCGA-HZ-7922        TCGA-HZ-7923        TCGA-HZ-7924 
"PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE"   "PCOLCE2 MUTATED"   "PCOLCE2 MUTATED" 
       TCGA-HZ-7925        TCGA-HZ-7926        TCGA-HZ-8001        TCGA-HZ-8002 
"PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE" 
       TCGA-HZ-8003        TCGA-HZ-8005        TCGA-HZ-8315        TCGA-HZ-8317 
"PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE" 
       TCGA-HZ-8636        TCGA-HZ-8638        TCGA-HZ-A49G        TCGA-HZ-A49H 
"PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE"   "PCOLCE2 MUTATED" "PCOLCE2 WILD-TYPE" 
       TCGA-HZ-A4BH        TCGA-HZ-A4BK        TCGA-IB-7644        TCGA-IB-7645 
"PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE" 
       TCGA-IB-7646        TCGA-IB-7647        TCGA-IB-7649        TCGA-IB-7651 
"PCOLCE2 WILD-TYPE"   "PCOLCE2 MUTATED" "PCOLCE2 WILD-TYPE"   "PCOLCE2 MUTATED" 
       TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-7886        TCGA-IB-7887 
"PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE" 
       TCGA-IB-7888        TCGA-IB-7889        TCGA-IB-7890        TCGA-IB-7891 
"PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE" 
       TCGA-IB-7893        TCGA-IB-7897        TCGA-IB-8126        TCGA-IB-8127 
"PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE"   "PCOLCE2 MUTATED" 
       TCGA-IB-A5SO        TCGA-IB-A5SP        TCGA-IB-A5SQ        TCGA-IB-A5SS 
"PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE" 
       TCGA-IB-A5ST        TCGA-IB-A6UG        TCGA-LB-A7SX        TCGA-OE-A75W 
"PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE" 
       TCGA-PZ-A5RE        TCGA-Q3-A5QY        TCGA-US-A779        TCGA-US-A77E 
"PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE" 
       TCGA-US-A77J 
"PCOLCE2 WILD-TYPE" 
       TCGA-F2-6879        TCGA-F2-6880        TCGA-F2-7273        TCGA-F2-7276 
"PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE" 
       TCGA-F2-A44G        TCGA-F2-A44H        TCGA-FB-A4P5        TCGA-FB-A4P6 
"PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE" 
       TCGA-FB-A545        TCGA-FB-A5VM        TCGA-FB-A78T        TCGA-FB-A7DR 
"PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE" 
       TCGA-FZ-5920        TCGA-FZ-5922        TCGA-FZ-5923        TCGA-H6-8124 
"PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE" 
       TCGA-H6-A45N        TCGA-H8-A6C1        TCGA-HZ-7289        TCGA-HZ-7918 
"PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE" 
       TCGA-HZ-7919        TCGA-HZ-7922        TCGA-HZ-7923        TCGA-HZ-7924 
"PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE"   "PCOLCE2 MUTATED"   "PCOLCE2 MUTATED" 
       TCGA-HZ-7925        TCGA-HZ-7926        TCGA-HZ-8001        TCGA-HZ-8002 
"PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE" 
       TCGA-HZ-8003        TCGA-HZ-8005        TCGA-HZ-8315        TCGA-HZ-8317 
"PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE" 
       TCGA-HZ-8636        TCGA-HZ-8638        TCGA-HZ-A49G        TCGA-HZ-A49H 
"PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE"   "PCOLCE2 MUTATED" "PCOLCE2 WILD-TYPE" 
       TCGA-HZ-A4BH        TCGA-HZ-A4BK        TCGA-IB-7644        TCGA-IB-7645 
"PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE" 
       TCGA-IB-7646        TCGA-IB-7647        TCGA-IB-7649        TCGA-IB-7651 
"PCOLCE2 WILD-TYPE"   "PCOLCE2 MUTATED" "PCOLCE2 WILD-TYPE"   "PCOLCE2 MUTATED" 
       TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-7886        TCGA-IB-7887 
"PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE" 
       TCGA-IB-7888        TCGA-IB-7889        TCGA-IB-7890        TCGA-IB-7891 
"PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE" 
       TCGA-IB-7893        TCGA-IB-7897        TCGA-IB-8126        TCGA-IB-8127 
"PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE"   "PCOLCE2 MUTATED" 
       TCGA-IB-A5SO        TCGA-IB-A5SP        TCGA-IB-A5SQ        TCGA-IB-A5SS 
"PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE" 
       TCGA-IB-A5ST        TCGA-IB-A6UG        TCGA-LB-A7SX        TCGA-OE-A75W 
"PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE" 
       TCGA-PZ-A5RE        TCGA-Q3-A5QY        TCGA-US-A779        TCGA-US-A77E 
"PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE" 
       TCGA-US-A77J 
"PCOLCE2 WILD-TYPE" 
       TCGA-F2-6879        TCGA-F2-6880        TCGA-F2-7273        TCGA-F2-7276 
"PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE" 
       TCGA-F2-A44G        TCGA-F2-A44H        TCGA-FB-A4P5        TCGA-FB-A4P6 
"PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE" 
       TCGA-FB-A545        TCGA-FB-A5VM        TCGA-FB-A78T        TCGA-FB-A7DR 
"PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE" 
       TCGA-FZ-5920        TCGA-FZ-5922        TCGA-FZ-5923        TCGA-H6-8124 
"PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE" 
       TCGA-H6-A45N        TCGA-H8-A6C1        TCGA-HZ-7289        TCGA-HZ-7918 
"PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE" 
       TCGA-HZ-7919        TCGA-HZ-7922        TCGA-HZ-7923        TCGA-HZ-7924 
"PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE"   "PCOLCE2 MUTATED"   "PCOLCE2 MUTATED" 
       TCGA-HZ-7925        TCGA-HZ-7926        TCGA-HZ-8001        TCGA-HZ-8002 
"PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE" 
       TCGA-HZ-8003        TCGA-HZ-8005        TCGA-HZ-8315        TCGA-HZ-8317 
"PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE" 
       TCGA-HZ-8636        TCGA-HZ-8638        TCGA-HZ-A49G        TCGA-HZ-A49H 
"PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE"   "PCOLCE2 MUTATED" "PCOLCE2 WILD-TYPE" 
       TCGA-HZ-A4BH        TCGA-HZ-A4BK        TCGA-IB-7644        TCGA-IB-7645 
"PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE" 
       TCGA-IB-7646        TCGA-IB-7647        TCGA-IB-7649        TCGA-IB-7651 
"PCOLCE2 WILD-TYPE"   "PCOLCE2 MUTATED" "PCOLCE2 WILD-TYPE"   "PCOLCE2 MUTATED" 
       TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-7886        TCGA-IB-7887 
"PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE" 
       TCGA-IB-7888        TCGA-IB-7889        TCGA-IB-7890        TCGA-IB-7891 
"PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE" 
       TCGA-IB-7893        TCGA-IB-7897        TCGA-IB-8126        TCGA-IB-8127 
"PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE"   "PCOLCE2 MUTATED" 
       TCGA-IB-A5SO        TCGA-IB-A5SP        TCGA-IB-A5SQ        TCGA-IB-A5SS 
"PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE" 
       TCGA-IB-A5ST        TCGA-IB-A6UG        TCGA-LB-A7SX        TCGA-OE-A75W 
"PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE" 
       TCGA-PZ-A5RE        TCGA-Q3-A5QY        TCGA-US-A779        TCGA-US-A77E 
"PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE" 
       TCGA-US-A77J 
"PCOLCE2 WILD-TYPE" 
[1] "hr=" "2.1"
D326V2, continuous
                   vv
clus                STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  PCOLCE2 MUTATED          0        0         2         4         0        0
  PCOLCE2 WILD-TYPE        1        4         9        47         2        3
D326V3, multiclass
                   vv
clus                T1+T2 T3+T4
  PCOLCE2 MUTATED       1     5
  PCOLCE2 WILD-TYPE     5    61
D326V4, multiclass
       clus
vv      PCOLCE2 MUTATED PCOLCE2 WILD-TYPE
  T1+T2               1                 5
  T3+T4               5                61
D326V5, binary
                   cls
clus                 0  1
  PCOLCE2 MUTATED    2  4
  PCOLCE2 WILD-TYPE 15 50
[1] "tbl2"
                   cls
clus                [,1] [,2]
  PCOLCE2 MUTATED      2    4
  PCOLCE2 WILD-TYPE   15   50
   clus
vv  PCOLCE2 MUTATED PCOLCE2 WILD-TYPE
  0               2                15
  1               4                50
                   vv
clus                M0 M1 MX
  PCOLCE2 MUTATED    3  0  3
  PCOLCE2 WILD-TYPE 36  3 27
D326V6, multiclass
    clus
vv   PCOLCE2 MUTATED PCOLCE2 WILD-TYPE
  M0               3                36
  M1               0                 3
  MX               3                27
D326V7, binary
                   cls
clus                 0  1
  PCOLCE2 MUTATED    4  2
  PCOLCE2 WILD-TYPE 32 34
[1] "tbl2"
                   cls
clus                [,1] [,2]
  PCOLCE2 MUTATED      4    2
  PCOLCE2 WILD-TYPE   32   34
        clus
vv       PCOLCE2 MUTATED PCOLCE2 WILD-TYPE
  FEMALE               4                32
  MALE                 2                34
                   vv
clus                PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  PCOLCE2 MUTATED                                     6
  PCOLCE2 WILD-TYPE                                  59
                   vv
clus                PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  PCOLCE2 MUTATED                                       0
  PCOLCE2 WILD-TYPE                                     4
                   vv
clus                PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  PCOLCE2 MUTATED                                                  0
  PCOLCE2 WILD-TYPE                                                2
D326V8, multiclass
                                                  clus
vv                                                 PCOLCE2 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                            6
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                          0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA               0
                                                  clus
vv                                                 PCOLCE2 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                             59
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                            4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                 2
D326V9, continuous
[1] "Remove cluster labels:" "PCOLCE2 MUTATED"       
clus
  PCOLCE2 MUTATED PCOLCE2 WILD-TYPE 
                2                20 
       TCGA-F2-6880        TCGA-FB-A4P5        TCGA-FB-A4P6        TCGA-FB-A5VM 
"PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE" 
       TCGA-FB-A78T        TCGA-FB-A7DR        TCGA-H6-8124        TCGA-H6-A45N 
"PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE" 
       TCGA-H8-A6C1        TCGA-IB-7644        TCGA-IB-7649        TCGA-IB-7885 
"PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE" 
       TCGA-IB-7886        TCGA-IB-7887        TCGA-IB-7891        TCGA-IB-8126 
"PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE" 
       TCGA-IB-A5SS        TCGA-IB-A6UG        TCGA-LB-A7SX        TCGA-OE-A75W 
"PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE" 
D326V10, continuous
[1] "Remove cluster labels:" "PCOLCE2 MUTATED"       
clus
  PCOLCE2 MUTATED PCOLCE2 WILD-TYPE 
                2                17 
       TCGA-FB-A4P5        TCGA-FB-A4P6        TCGA-FB-A5VM        TCGA-FB-A78T 
"PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE" 
       TCGA-FB-A7DR        TCGA-H6-8124        TCGA-H8-A6C1        TCGA-IB-7644 
"PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE" 
       TCGA-IB-7649        TCGA-IB-7885        TCGA-IB-7886        TCGA-IB-7891 
"PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE" 
       TCGA-IB-8126        TCGA-IB-A5SS        TCGA-IB-A6UG        TCGA-LB-A7SX 
"PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE" "PCOLCE2 WILD-TYPE" 
       TCGA-OE-A75W 
"PCOLCE2 WILD-TYPE" 
                   vv
clus                R0 R1 RX
  PCOLCE2 MUTATED    3  3  0
  PCOLCE2 WILD-TYPE 39 21  2
D326V11, multiclass
    clus
vv   PCOLCE2 MUTATED PCOLCE2 WILD-TYPE
  R0               3                39
  R1               3                21
  RX               0                 2
D326V12, continuous

Clustering(327) Variable = NT5C2 MUTATION ANALYSIS
D327V1, survival
                 sevent
clus2              0  1
  NT5C2 MUTATED    0  3
  NT5C2 WILD-TYPE 40 26
  NT5C2 MUTATED NT5C2 WILD-TYPE 
              3              66 
  NT5C2 MUTATED NT5C2 WILD-TYPE 
              3              26 
$`NT5C2 MUTATED`
TCGA-FB-A4P5 TCGA-IB-7889 TCGA-IB-7893 
        0.13        15.81         3.85 

$`NT5C2 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR TCGA-FZ-5920 
       11.93        12.66         2.47         0.03         5.46         2.01 
TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7289 
       36.20        20.81        12.89         7.66        13.02         7.89 
TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 
        0.92         0.66         0.13         0.26        12.13        11.87 
TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 
        0.26         0.62         0.79         0.69         3.95         0.92 
TCGA-HZ-8317 TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH 
        0.53         0.16         2.99         0.76         0.95         6.38 
TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 
        1.51        11.41        49.38         4.77        21.90        15.35 
TCGA-IB-7651 TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7888 
       19.82        15.65        27.98         4.04         3.62        43.79 
TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO 
       19.66        16.04        15.98         0.56        17.16        10.82 
TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX 
        9.86         7.20        15.12         0.26         1.35         4.18 
TCGA-OE-A75W TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
        3.62         8.12        13.68        16.80        14.14        18.67 

  NT5C2 MUTATED NT5C2 WILD-TYPE 
           0.13            0.03 
  NT5C2 MUTATED NT5C2 WILD-TYPE 
          15.81           49.38 
  NT5C2 MUTATED NT5C2 WILD-TYPE 
          3.850           7.775 
[1] "0.1 - 15.8 (3.9)" "0.0 - 49.4 (7.8)"
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"NT5C2 WILD-TYPE" "NT5C2 WILD-TYPE" "NT5C2 WILD-TYPE" "NT5C2 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"NT5C2 WILD-TYPE" "NT5C2 WILD-TYPE"   "NT5C2 MUTATED" "NT5C2 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"NT5C2 WILD-TYPE" "NT5C2 WILD-TYPE" "NT5C2 WILD-TYPE" "NT5C2 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"NT5C2 WILD-TYPE" "NT5C2 WILD-TYPE" "NT5C2 WILD-TYPE" "NT5C2 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"NT5C2 WILD-TYPE" "NT5C2 WILD-TYPE" "NT5C2 WILD-TYPE" "NT5C2 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"NT5C2 WILD-TYPE" "NT5C2 WILD-TYPE" "NT5C2 WILD-TYPE" "NT5C2 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"NT5C2 WILD-TYPE" "NT5C2 WILD-TYPE" "NT5C2 WILD-TYPE" "NT5C2 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"NT5C2 WILD-TYPE" "NT5C2 WILD-TYPE" "NT5C2 WILD-TYPE" "NT5C2 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"NT5C2 WILD-TYPE" "NT5C2 WILD-TYPE" "NT5C2 WILD-TYPE" "NT5C2 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"NT5C2 WILD-TYPE" "NT5C2 WILD-TYPE" "NT5C2 WILD-TYPE" "NT5C2 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"NT5C2 WILD-TYPE" "NT5C2 WILD-TYPE" "NT5C2 WILD-TYPE" "NT5C2 WILD-TYPE" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"NT5C2 WILD-TYPE" "NT5C2 WILD-TYPE" "NT5C2 WILD-TYPE" "NT5C2 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"NT5C2 WILD-TYPE"   "NT5C2 MUTATED" "NT5C2 WILD-TYPE" "NT5C2 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
  "NT5C2 MUTATED" "NT5C2 WILD-TYPE" "NT5C2 WILD-TYPE" "NT5C2 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"NT5C2 WILD-TYPE" "NT5C2 WILD-TYPE" "NT5C2 WILD-TYPE" "NT5C2 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"NT5C2 WILD-TYPE" "NT5C2 WILD-TYPE" "NT5C2 WILD-TYPE" "NT5C2 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"NT5C2 WILD-TYPE" "NT5C2 WILD-TYPE" "NT5C2 WILD-TYPE" "NT5C2 WILD-TYPE" 
     TCGA-US-A77J 
"NT5C2 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"NT5C2 WILD-TYPE" "NT5C2 WILD-TYPE" "NT5C2 WILD-TYPE" "NT5C2 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"NT5C2 WILD-TYPE" "NT5C2 WILD-TYPE"   "NT5C2 MUTATED" "NT5C2 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"NT5C2 WILD-TYPE" "NT5C2 WILD-TYPE" "NT5C2 WILD-TYPE" "NT5C2 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"NT5C2 WILD-TYPE" "NT5C2 WILD-TYPE" "NT5C2 WILD-TYPE" "NT5C2 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"NT5C2 WILD-TYPE" "NT5C2 WILD-TYPE" "NT5C2 WILD-TYPE" "NT5C2 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"NT5C2 WILD-TYPE" "NT5C2 WILD-TYPE" "NT5C2 WILD-TYPE" "NT5C2 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"NT5C2 WILD-TYPE" "NT5C2 WILD-TYPE" "NT5C2 WILD-TYPE" "NT5C2 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"NT5C2 WILD-TYPE" "NT5C2 WILD-TYPE" "NT5C2 WILD-TYPE" "NT5C2 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"NT5C2 WILD-TYPE" "NT5C2 WILD-TYPE" "NT5C2 WILD-TYPE" "NT5C2 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"NT5C2 WILD-TYPE" "NT5C2 WILD-TYPE" "NT5C2 WILD-TYPE" "NT5C2 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"NT5C2 WILD-TYPE" "NT5C2 WILD-TYPE" "NT5C2 WILD-TYPE" "NT5C2 WILD-TYPE" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"NT5C2 WILD-TYPE" "NT5C2 WILD-TYPE" "NT5C2 WILD-TYPE" "NT5C2 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"NT5C2 WILD-TYPE"   "NT5C2 MUTATED" "NT5C2 WILD-TYPE" "NT5C2 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
  "NT5C2 MUTATED" "NT5C2 WILD-TYPE" "NT5C2 WILD-TYPE" "NT5C2 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"NT5C2 WILD-TYPE" "NT5C2 WILD-TYPE" "NT5C2 WILD-TYPE" "NT5C2 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"NT5C2 WILD-TYPE" "NT5C2 WILD-TYPE" "NT5C2 WILD-TYPE" "NT5C2 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"NT5C2 WILD-TYPE" "NT5C2 WILD-TYPE" "NT5C2 WILD-TYPE" "NT5C2 WILD-TYPE" 
     TCGA-US-A77J 
"NT5C2 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"NT5C2 WILD-TYPE" "NT5C2 WILD-TYPE" "NT5C2 WILD-TYPE" "NT5C2 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"NT5C2 WILD-TYPE" "NT5C2 WILD-TYPE"   "NT5C2 MUTATED" "NT5C2 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"NT5C2 WILD-TYPE" "NT5C2 WILD-TYPE" "NT5C2 WILD-TYPE" "NT5C2 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"NT5C2 WILD-TYPE" "NT5C2 WILD-TYPE" "NT5C2 WILD-TYPE" "NT5C2 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"NT5C2 WILD-TYPE" "NT5C2 WILD-TYPE" "NT5C2 WILD-TYPE" "NT5C2 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"NT5C2 WILD-TYPE" "NT5C2 WILD-TYPE" "NT5C2 WILD-TYPE" "NT5C2 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"NT5C2 WILD-TYPE" "NT5C2 WILD-TYPE" "NT5C2 WILD-TYPE" "NT5C2 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"NT5C2 WILD-TYPE" "NT5C2 WILD-TYPE" "NT5C2 WILD-TYPE" "NT5C2 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"NT5C2 WILD-TYPE" "NT5C2 WILD-TYPE" "NT5C2 WILD-TYPE" "NT5C2 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"NT5C2 WILD-TYPE" "NT5C2 WILD-TYPE" "NT5C2 WILD-TYPE" "NT5C2 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"NT5C2 WILD-TYPE" "NT5C2 WILD-TYPE" "NT5C2 WILD-TYPE" "NT5C2 WILD-TYPE" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"NT5C2 WILD-TYPE" "NT5C2 WILD-TYPE" "NT5C2 WILD-TYPE" "NT5C2 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"NT5C2 WILD-TYPE"   "NT5C2 MUTATED" "NT5C2 WILD-TYPE" "NT5C2 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
  "NT5C2 MUTATED" "NT5C2 WILD-TYPE" "NT5C2 WILD-TYPE" "NT5C2 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"NT5C2 WILD-TYPE" "NT5C2 WILD-TYPE" "NT5C2 WILD-TYPE" "NT5C2 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"NT5C2 WILD-TYPE" "NT5C2 WILD-TYPE" "NT5C2 WILD-TYPE" "NT5C2 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"NT5C2 WILD-TYPE" "NT5C2 WILD-TYPE" "NT5C2 WILD-TYPE" "NT5C2 WILD-TYPE" 
     TCGA-US-A77J 
"NT5C2 WILD-TYPE" 
[1] "hr=" "4.8"
D327V2, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  NT5C2 MUTATED          0        0         1         2         0        0
  NT5C2 WILD-TYPE        1        4        10        49         2        3
D327V3, multiclass
                 vv
clus              T1+T2 T3+T4
  NT5C2 MUTATED       0     3
  NT5C2 WILD-TYPE     6    63
D327V4, multiclass
       clus
vv      NT5C2 MUTATED NT5C2 WILD-TYPE
  T1+T2             0               6
  T3+T4             3              63
D327V5, binary
                 cls
clus               0  1
  NT5C2 MUTATED    1  2
  NT5C2 WILD-TYPE 16 52
[1] "tbl2"
                 cls
clus              [,1] [,2]
  NT5C2 MUTATED      1    2
  NT5C2 WILD-TYPE   16   52
   clus
vv  NT5C2 MUTATED NT5C2 WILD-TYPE
  0             1              16
  1             2              52
                 vv
clus              M0 M1 MX
  NT5C2 MUTATED    2  0  1
  NT5C2 WILD-TYPE 37  3 29
D327V6, multiclass
    clus
vv   NT5C2 MUTATED NT5C2 WILD-TYPE
  M0             2              37
  M1             0               3
  MX             1              29
D327V7, binary
                 cls
clus               0  1
  NT5C2 MUTATED    2  1
  NT5C2 WILD-TYPE 34 35
[1] "tbl2"
                 cls
clus              [,1] [,2]
  NT5C2 MUTATED      2    1
  NT5C2 WILD-TYPE   34   35
        clus
vv       NT5C2 MUTATED NT5C2 WILD-TYPE
  FEMALE             2              34
  MALE               1              35
                 vv
clus              PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  NT5C2 MUTATED                                     3
  NT5C2 WILD-TYPE                                  62
                 vv
clus              PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  NT5C2 MUTATED                                       0
  NT5C2 WILD-TYPE                                     4
                 vv
clus              PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  NT5C2 MUTATED                                                  0
  NT5C2 WILD-TYPE                                                2
D327V8, multiclass
                                                  clus
vv                                                 NT5C2 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                          3
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                        0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA             0
                                                  clus
vv                                                 NT5C2 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                           62
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                          4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA               2
D327V9, continuous
[1] "Remove cluster labels:" "NT5C2 MUTATED"         
clus
  NT5C2 MUTATED NT5C2 WILD-TYPE 
              1              21 
     TCGA-F2-6880      TCGA-FB-A4P6      TCGA-FB-A5VM      TCGA-FB-A78T 
"NT5C2 WILD-TYPE" "NT5C2 WILD-TYPE" "NT5C2 WILD-TYPE" "NT5C2 WILD-TYPE" 
     TCGA-FB-A7DR      TCGA-H6-8124      TCGA-H6-A45N      TCGA-H8-A6C1 
"NT5C2 WILD-TYPE" "NT5C2 WILD-TYPE" "NT5C2 WILD-TYPE" "NT5C2 WILD-TYPE" 
     TCGA-IB-7644      TCGA-IB-7649      TCGA-IB-7651      TCGA-IB-7885 
"NT5C2 WILD-TYPE" "NT5C2 WILD-TYPE" "NT5C2 WILD-TYPE" "NT5C2 WILD-TYPE" 
     TCGA-IB-7886      TCGA-IB-7887      TCGA-IB-7891      TCGA-IB-8126 
"NT5C2 WILD-TYPE" "NT5C2 WILD-TYPE" "NT5C2 WILD-TYPE" "NT5C2 WILD-TYPE" 
     TCGA-IB-8127      TCGA-IB-A5SS      TCGA-IB-A6UG      TCGA-LB-A7SX 
"NT5C2 WILD-TYPE" "NT5C2 WILD-TYPE" "NT5C2 WILD-TYPE" "NT5C2 WILD-TYPE" 
     TCGA-OE-A75W 
"NT5C2 WILD-TYPE" 
D327V10, continuous
[1] "Remove cluster labels:" "NT5C2 MUTATED"         
clus
  NT5C2 MUTATED NT5C2 WILD-TYPE 
              1              18 
     TCGA-FB-A4P6      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"NT5C2 WILD-TYPE" "NT5C2 WILD-TYPE" "NT5C2 WILD-TYPE" "NT5C2 WILD-TYPE" 
     TCGA-H6-8124      TCGA-H8-A6C1      TCGA-IB-7644      TCGA-IB-7649 
"NT5C2 WILD-TYPE" "NT5C2 WILD-TYPE" "NT5C2 WILD-TYPE" "NT5C2 WILD-TYPE" 
     TCGA-IB-7651      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7891 
"NT5C2 WILD-TYPE" "NT5C2 WILD-TYPE" "NT5C2 WILD-TYPE" "NT5C2 WILD-TYPE" 
     TCGA-IB-8126      TCGA-IB-8127      TCGA-IB-A5SS      TCGA-IB-A6UG 
"NT5C2 WILD-TYPE" "NT5C2 WILD-TYPE" "NT5C2 WILD-TYPE" "NT5C2 WILD-TYPE" 
     TCGA-LB-A7SX      TCGA-OE-A75W 
"NT5C2 WILD-TYPE" "NT5C2 WILD-TYPE" 
                 vv
clus              R0 R1 RX
  NT5C2 MUTATED    3  0  0
  NT5C2 WILD-TYPE 39 24  2
D327V11, multiclass
    clus
vv   NT5C2 MUTATED NT5C2 WILD-TYPE
  R0             3              39
  R1             0              24
  RX             0               2
D327V12, continuous

Clustering(328) Variable = CMTM1 MUTATION ANALYSIS
D328V1, survival
                 sevent
clus2              0  1
  CMTM1 MUTATED    2  1
  CMTM1 WILD-TYPE 38 28
  CMTM1 MUTATED CMTM1 WILD-TYPE 
              3              66 
  CMTM1 MUTATED CMTM1 WILD-TYPE 
              1              28 
$`CMTM1 MUTATED`
TCGA-H6-A45N TCGA-HZ-8003 TCGA-IB-7891 
        7.66         0.69        16.04 

$`CMTM1 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P5 TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR 
        0.13        11.93        12.66         2.47         0.03         5.46 
TCGA-FZ-5920 TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 TCGA-H8-A6C1 TCGA-HZ-7289 
        2.01        36.20        20.81        12.89        13.02         7.89 
TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 
        0.92         0.66         0.13         0.26        12.13        11.87 
TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 
        0.26         0.62         0.79         3.95         0.92         0.53 
TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK 
        0.16         2.99         0.76         0.95         6.38         1.51 
TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7651 
       11.41        49.38         4.77        21.90        15.35        19.82 
TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 
       15.65        27.98         4.04         3.62        43.79        15.81 
TCGA-IB-7890 TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO 
       19.66         3.85        15.98         0.56        17.16        10.82 
TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX 
        9.86         7.20        15.12         0.26         1.35         4.18 
TCGA-OE-A75W TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
        3.62         8.12        13.68        16.80        14.14        18.67 

  CMTM1 MUTATED CMTM1 WILD-TYPE 
           0.69            0.03 
  CMTM1 MUTATED CMTM1 WILD-TYPE 
          16.04           49.38 
  CMTM1 MUTATED CMTM1 WILD-TYPE 
          7.660           7.545 
[1] "0.7 - 16.0 (7.7)" "0.0 - 49.4 (7.5)"
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
  "CMTM1 MUTATED" "CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
  "CMTM1 MUTATED" "CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE"   "CMTM1 MUTATED" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" 
     TCGA-US-A77J 
"CMTM1 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
  "CMTM1 MUTATED" "CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
  "CMTM1 MUTATED" "CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE"   "CMTM1 MUTATED" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" 
     TCGA-US-A77J 
"CMTM1 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
  "CMTM1 MUTATED" "CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
  "CMTM1 MUTATED" "CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE"   "CMTM1 MUTATED" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" 
     TCGA-US-A77J 
"CMTM1 WILD-TYPE" 
[1] "hr=" "1"  
D328V2, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  CMTM1 MUTATED          0        0         0         3         0        0
  CMTM1 WILD-TYPE        1        4        11        48         2        3
D328V3, multiclass
                 vv
clus              T1+T2 T3+T4
  CMTM1 MUTATED       0     3
  CMTM1 WILD-TYPE     6    63
D328V4, multiclass
       clus
vv      CMTM1 MUTATED CMTM1 WILD-TYPE
  T1+T2             0               6
  T3+T4             3              63
D328V5, binary
                 cls
clus               0  1
  CMTM1 MUTATED    0  3
  CMTM1 WILD-TYPE 17 51
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CMTM1 MUTATED      0    3
  CMTM1 WILD-TYPE   17   51
   clus
vv  CMTM1 MUTATED CMTM1 WILD-TYPE
  0             0              17
  1             3              51
                 vv
clus              M0 M1 MX
  CMTM1 MUTATED    1  0  2
  CMTM1 WILD-TYPE 38  3 28
D328V6, multiclass
    clus
vv   CMTM1 MUTATED CMTM1 WILD-TYPE
  M0             1              38
  M1             0               3
  MX             2              28
D328V7, binary
                 cls
clus               0  1
  CMTM1 MUTATED    2  1
  CMTM1 WILD-TYPE 34 35
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CMTM1 MUTATED      2    1
  CMTM1 WILD-TYPE   34   35
        clus
vv       CMTM1 MUTATED CMTM1 WILD-TYPE
  FEMALE             2              34
  MALE               1              35
                 vv
clus              PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  CMTM1 MUTATED                                     2
  CMTM1 WILD-TYPE                                  63
                 vv
clus              PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  CMTM1 MUTATED                                       1
  CMTM1 WILD-TYPE                                     3
                 vv
clus              PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  CMTM1 MUTATED                                                  0
  CMTM1 WILD-TYPE                                                2
D328V8, multiclass
                                                  clus
vv                                                 CMTM1 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                          2
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                        1
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA             0
                                                  clus
vv                                                 CMTM1 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                           63
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                          3
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA               2
D328V9, continuous
[1] "Remove cluster labels:" "CMTM1 MUTATED"         
clus
  CMTM1 MUTATED CMTM1 WILD-TYPE 
              2              20 
     TCGA-F2-6880      TCGA-FB-A4P5      TCGA-FB-A4P6      TCGA-FB-A5VM 
"CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" 
     TCGA-FB-A78T      TCGA-FB-A7DR      TCGA-H6-8124      TCGA-H8-A6C1 
"CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" 
     TCGA-IB-7644      TCGA-IB-7649      TCGA-IB-7651      TCGA-IB-7885 
"CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" 
     TCGA-IB-7886      TCGA-IB-7887      TCGA-IB-8126      TCGA-IB-8127 
"CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" 
     TCGA-IB-A5SS      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" 
D328V10, continuous
[1] "Remove cluster labels:" "CMTM1 MUTATED"         
clus
  CMTM1 MUTATED CMTM1 WILD-TYPE 
              1              18 
     TCGA-FB-A4P5      TCGA-FB-A4P6      TCGA-FB-A5VM      TCGA-FB-A78T 
"CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" 
     TCGA-FB-A7DR      TCGA-H6-8124      TCGA-H8-A6C1      TCGA-IB-7644 
"CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" 
     TCGA-IB-7649      TCGA-IB-7651      TCGA-IB-7885      TCGA-IB-7886 
"CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" 
     TCGA-IB-8126      TCGA-IB-8127      TCGA-IB-A5SS      TCGA-IB-A6UG 
"CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" 
     TCGA-LB-A7SX      TCGA-OE-A75W 
"CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" 
                 vv
clus              R0 R1 RX
  CMTM1 MUTATED    2  0  0
  CMTM1 WILD-TYPE 40 24  2
D328V11, multiclass
[1] "Remove cluster labels:" "CMTM1 MUTATED"         
clus
  CMTM1 MUTATED CMTM1 WILD-TYPE 
              2              66 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A5VM 
"CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" 
     TCGA-FB-A78T      TCGA-FB-A7DR      TCGA-FZ-5920      TCGA-FZ-5922 
"CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" 
     TCGA-FZ-5923      TCGA-H6-8124      TCGA-H8-A6C1      TCGA-HZ-7289 
"CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" 
     TCGA-HZ-7918      TCGA-HZ-7919      TCGA-HZ-7920      TCGA-HZ-7922 
"CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" 
     TCGA-HZ-7923      TCGA-HZ-7924      TCGA-HZ-7925      TCGA-HZ-7926 
"CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" 
     TCGA-HZ-8001      TCGA-HZ-8002      TCGA-HZ-8005      TCGA-HZ-8315 
"CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" 
     TCGA-HZ-8317      TCGA-HZ-8636      TCGA-HZ-8637      TCGA-HZ-8638 
"CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" 
     TCGA-HZ-A49G      TCGA-HZ-A49H      TCGA-HZ-A49I      TCGA-HZ-A4BH 
"CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" 
     TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645      TCGA-IB-7646 
"CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" 
     TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651      TCGA-IB-7652 
"CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" 
     TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887      TCGA-IB-7888 
"CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" 
     TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7893      TCGA-IB-7897 
"CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" 
     TCGA-IB-8126      TCGA-IB-8127      TCGA-IB-A5SO      TCGA-IB-A5SP 
"CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" 
     TCGA-IB-A5SQ      TCGA-IB-A5SS      TCGA-IB-A5ST      TCGA-IB-A6UG 
"CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" 
     TCGA-LB-A7SX      TCGA-OE-A75W      TCGA-Q3-A5QY      TCGA-US-A779 
"CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" 
     TCGA-US-A77E      TCGA-US-A77J 
"CMTM1 WILD-TYPE" "CMTM1 WILD-TYPE" 
D328V12, continuous

Clustering(329) Variable = SPAG9 MUTATION ANALYSIS
D329V1, survival
                 sevent
clus2              0  1
  SPAG9 MUTATED    4  2
  SPAG9 WILD-TYPE 36 27
  SPAG9 MUTATED SPAG9 WILD-TYPE 
              6              63 
  SPAG9 MUTATED SPAG9 WILD-TYPE 
              2              27 
$`SPAG9 MUTATED`
TCGA-FB-A4P6 TCGA-HZ-7922 TCGA-IB-7651 TCGA-IB-7891 TCGA-IB-7897 TCGA-IB-A5ST 
       11.93         0.13        19.82        16.04        15.98         0.26 

$`SPAG9 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P5 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR TCGA-FZ-5920 
        0.13        12.66         2.47         0.03         5.46         2.01 
TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7289 
       36.20        20.81        12.89         7.66        13.02         7.89 
TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 
        0.92         0.66         0.26        12.13        11.87         0.26 
TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 
        0.62         0.79         0.69         3.95         0.92         0.53 
TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK 
        0.16         2.99         0.76         0.95         6.38         1.51 
TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7652 
       11.41        49.38         4.77        21.90        15.35        15.65 
TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 
       27.98         4.04         3.62        43.79        15.81        19.66 
TCGA-IB-7893 TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ 
        3.85         0.56        17.16        10.82         9.86         7.20 
TCGA-IB-A5SS TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W TCGA-PZ-A5RE TCGA-Q3-A5QY 
       15.12         1.35         4.18         3.62         8.12        13.68 
TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
       16.80        14.14        18.67 

  SPAG9 MUTATED SPAG9 WILD-TYPE 
           0.13            0.03 
  SPAG9 MUTATED SPAG9 WILD-TYPE 
          19.82           49.38 
  SPAG9 MUTATED SPAG9 WILD-TYPE 
         13.955           7.200 
[1] "0.1 - 19.8 (14.0)" "0.0 - 49.4 (7.2)" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"SPAG9 WILD-TYPE" "SPAG9 WILD-TYPE" "SPAG9 WILD-TYPE" "SPAG9 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"SPAG9 WILD-TYPE" "SPAG9 WILD-TYPE" "SPAG9 WILD-TYPE"   "SPAG9 MUTATED" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"SPAG9 WILD-TYPE" "SPAG9 WILD-TYPE" "SPAG9 WILD-TYPE" "SPAG9 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"SPAG9 WILD-TYPE" "SPAG9 WILD-TYPE" "SPAG9 WILD-TYPE" "SPAG9 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"SPAG9 WILD-TYPE" "SPAG9 WILD-TYPE" "SPAG9 WILD-TYPE" "SPAG9 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"SPAG9 WILD-TYPE"   "SPAG9 MUTATED" "SPAG9 WILD-TYPE" "SPAG9 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"SPAG9 WILD-TYPE" "SPAG9 WILD-TYPE" "SPAG9 WILD-TYPE" "SPAG9 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"SPAG9 WILD-TYPE" "SPAG9 WILD-TYPE" "SPAG9 WILD-TYPE" "SPAG9 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"SPAG9 WILD-TYPE" "SPAG9 WILD-TYPE" "SPAG9 WILD-TYPE" "SPAG9 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"SPAG9 WILD-TYPE" "SPAG9 WILD-TYPE" "SPAG9 WILD-TYPE" "SPAG9 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"SPAG9 WILD-TYPE" "SPAG9 WILD-TYPE" "SPAG9 WILD-TYPE"   "SPAG9 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"SPAG9 WILD-TYPE" "SPAG9 WILD-TYPE" "SPAG9 WILD-TYPE" "SPAG9 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"SPAG9 WILD-TYPE" "SPAG9 WILD-TYPE" "SPAG9 WILD-TYPE"   "SPAG9 MUTATED" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"SPAG9 WILD-TYPE"   "SPAG9 MUTATED" "SPAG9 WILD-TYPE" "SPAG9 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"SPAG9 WILD-TYPE" "SPAG9 WILD-TYPE" "SPAG9 WILD-TYPE" "SPAG9 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
  "SPAG9 MUTATED" "SPAG9 WILD-TYPE" "SPAG9 WILD-TYPE" "SPAG9 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"SPAG9 WILD-TYPE" "SPAG9 WILD-TYPE" "SPAG9 WILD-TYPE" "SPAG9 WILD-TYPE" 
     TCGA-US-A77J 
"SPAG9 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"SPAG9 WILD-TYPE" "SPAG9 WILD-TYPE" "SPAG9 WILD-TYPE" "SPAG9 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"SPAG9 WILD-TYPE" "SPAG9 WILD-TYPE" "SPAG9 WILD-TYPE"   "SPAG9 MUTATED" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"SPAG9 WILD-TYPE" "SPAG9 WILD-TYPE" "SPAG9 WILD-TYPE" "SPAG9 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"SPAG9 WILD-TYPE" "SPAG9 WILD-TYPE" "SPAG9 WILD-TYPE" "SPAG9 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"SPAG9 WILD-TYPE" "SPAG9 WILD-TYPE" "SPAG9 WILD-TYPE" "SPAG9 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"SPAG9 WILD-TYPE"   "SPAG9 MUTATED" "SPAG9 WILD-TYPE" "SPAG9 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"SPAG9 WILD-TYPE" "SPAG9 WILD-TYPE" "SPAG9 WILD-TYPE" "SPAG9 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"SPAG9 WILD-TYPE" "SPAG9 WILD-TYPE" "SPAG9 WILD-TYPE" "SPAG9 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"SPAG9 WILD-TYPE" "SPAG9 WILD-TYPE" "SPAG9 WILD-TYPE" "SPAG9 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"SPAG9 WILD-TYPE" "SPAG9 WILD-TYPE" "SPAG9 WILD-TYPE" "SPAG9 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"SPAG9 WILD-TYPE" "SPAG9 WILD-TYPE" "SPAG9 WILD-TYPE"   "SPAG9 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"SPAG9 WILD-TYPE" "SPAG9 WILD-TYPE" "SPAG9 WILD-TYPE" "SPAG9 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"SPAG9 WILD-TYPE" "SPAG9 WILD-TYPE" "SPAG9 WILD-TYPE"   "SPAG9 MUTATED" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"SPAG9 WILD-TYPE"   "SPAG9 MUTATED" "SPAG9 WILD-TYPE" "SPAG9 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"SPAG9 WILD-TYPE" "SPAG9 WILD-TYPE" "SPAG9 WILD-TYPE" "SPAG9 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
  "SPAG9 MUTATED" "SPAG9 WILD-TYPE" "SPAG9 WILD-TYPE" "SPAG9 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"SPAG9 WILD-TYPE" "SPAG9 WILD-TYPE" "SPAG9 WILD-TYPE" "SPAG9 WILD-TYPE" 
     TCGA-US-A77J 
"SPAG9 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"SPAG9 WILD-TYPE" "SPAG9 WILD-TYPE" "SPAG9 WILD-TYPE" "SPAG9 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"SPAG9 WILD-TYPE" "SPAG9 WILD-TYPE" "SPAG9 WILD-TYPE"   "SPAG9 MUTATED" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"SPAG9 WILD-TYPE" "SPAG9 WILD-TYPE" "SPAG9 WILD-TYPE" "SPAG9 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"SPAG9 WILD-TYPE" "SPAG9 WILD-TYPE" "SPAG9 WILD-TYPE" "SPAG9 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"SPAG9 WILD-TYPE" "SPAG9 WILD-TYPE" "SPAG9 WILD-TYPE" "SPAG9 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"SPAG9 WILD-TYPE"   "SPAG9 MUTATED" "SPAG9 WILD-TYPE" "SPAG9 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"SPAG9 WILD-TYPE" "SPAG9 WILD-TYPE" "SPAG9 WILD-TYPE" "SPAG9 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"SPAG9 WILD-TYPE" "SPAG9 WILD-TYPE" "SPAG9 WILD-TYPE" "SPAG9 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"SPAG9 WILD-TYPE" "SPAG9 WILD-TYPE" "SPAG9 WILD-TYPE" "SPAG9 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"SPAG9 WILD-TYPE" "SPAG9 WILD-TYPE" "SPAG9 WILD-TYPE" "SPAG9 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"SPAG9 WILD-TYPE" "SPAG9 WILD-TYPE" "SPAG9 WILD-TYPE"   "SPAG9 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"SPAG9 WILD-TYPE" "SPAG9 WILD-TYPE" "SPAG9 WILD-TYPE" "SPAG9 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"SPAG9 WILD-TYPE" "SPAG9 WILD-TYPE" "SPAG9 WILD-TYPE"   "SPAG9 MUTATED" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"SPAG9 WILD-TYPE"   "SPAG9 MUTATED" "SPAG9 WILD-TYPE" "SPAG9 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"SPAG9 WILD-TYPE" "SPAG9 WILD-TYPE" "SPAG9 WILD-TYPE" "SPAG9 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
  "SPAG9 MUTATED" "SPAG9 WILD-TYPE" "SPAG9 WILD-TYPE" "SPAG9 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"SPAG9 WILD-TYPE" "SPAG9 WILD-TYPE" "SPAG9 WILD-TYPE" "SPAG9 WILD-TYPE" 
     TCGA-US-A77J 
"SPAG9 WILD-TYPE" 
[1] "hr=" "1.5"
D329V2, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  SPAG9 MUTATED          0        0         0         7         0        0
  SPAG9 WILD-TYPE        1        4        11        44         2        3
D329V3, multiclass
                 vv
clus              T1+T2 T3+T4
  SPAG9 MUTATED       0     7
  SPAG9 WILD-TYPE     6    59
D329V4, multiclass
       clus
vv      SPAG9 MUTATED SPAG9 WILD-TYPE
  T1+T2             0               6
  T3+T4             7              59
D329V5, binary
                 cls
clus               0  1
  SPAG9 MUTATED    0  7
  SPAG9 WILD-TYPE 17 47
[1] "tbl2"
                 cls
clus              [,1] [,2]
  SPAG9 MUTATED      0    7
  SPAG9 WILD-TYPE   17   47
   clus
vv  SPAG9 MUTATED SPAG9 WILD-TYPE
  0             0              17
  1             7              47
                 vv
clus              M0 M1 MX
  SPAG9 MUTATED    4  0  3
  SPAG9 WILD-TYPE 35  3 27
D329V6, multiclass
    clus
vv   SPAG9 MUTATED SPAG9 WILD-TYPE
  M0             4              35
  M1             0               3
  MX             3              27
D329V7, binary
                 cls
clus               0  1
  SPAG9 MUTATED    4  3
  SPAG9 WILD-TYPE 32 33
[1] "tbl2"
                 cls
clus              [,1] [,2]
  SPAG9 MUTATED      4    3
  SPAG9 WILD-TYPE   32   33
        clus
vv       SPAG9 MUTATED SPAG9 WILD-TYPE
  FEMALE             4              32
  MALE               3              33
                 vv
clus              PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  SPAG9 MUTATED                                     7
  SPAG9 WILD-TYPE                                  58
                 vv
clus              PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  SPAG9 MUTATED                                       0
  SPAG9 WILD-TYPE                                     4
                 vv
clus              PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  SPAG9 MUTATED                                                  0
  SPAG9 WILD-TYPE                                                2
D329V8, multiclass
                                                  clus
vv                                                 SPAG9 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                          7
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                        0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA             0
                                                  clus
vv                                                 SPAG9 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                           58
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                          4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA               2
D329V9, continuous
D329V10, continuous
                 vv
clus              R0 R1 RX
  SPAG9 MUTATED    5  1  0
  SPAG9 WILD-TYPE 37 23  2
D329V11, multiclass
    clus
vv   SPAG9 MUTATED SPAG9 WILD-TYPE
  R0             5              37
  R1             1              23
  RX             0               2
D329V12, continuous

Clustering(330) Variable = PHTF2 MUTATION ANALYSIS
D330V1, survival
                 sevent
clus2              0  1
  PHTF2 MUTATED    4  3
  PHTF2 WILD-TYPE 36 26
  PHTF2 MUTATED PHTF2 WILD-TYPE 
              7              62 
  PHTF2 MUTATED PHTF2 WILD-TYPE 
              3              26 
$`PHTF2 MUTATED`
TCGA-FB-A4P6 TCGA-H6-A45N TCGA-HZ-8001 TCGA-HZ-8317 TCGA-IB-7651 TCGA-IB-7891 
       11.93         7.66         0.62         0.53        19.82        16.04 
TCGA-IB-7893 
        3.85 

$`PHTF2 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P5 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR TCGA-FZ-5920 
        0.13        12.66         2.47         0.03         5.46         2.01 
TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 TCGA-H8-A6C1 TCGA-HZ-7289 TCGA-HZ-7918 
       36.20        20.81        12.89        13.02         7.89         0.92 
TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 
        0.66         0.13         0.26        12.13        11.87         0.26 
TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8636 TCGA-HZ-8638 
        0.79         0.69         3.95         0.92         0.16         2.99 
TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7645 
        0.76         0.95         6.38         1.51        11.41        49.38 
TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7886 
        4.77        21.90        15.35        15.65        27.98         4.04 
TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7897 TCGA-IB-8126 
        3.62        43.79        15.81        19.66        15.98         0.56 
TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST 
       17.16        10.82         9.86         7.20        15.12         0.26 
TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 
        1.35         4.18         3.62         8.12        13.68        16.80 
TCGA-US-A77E TCGA-US-A77J 
       14.14        18.67 

  PHTF2 MUTATED PHTF2 WILD-TYPE 
           0.53            0.03 
  PHTF2 MUTATED PHTF2 WILD-TYPE 
          19.82           49.38 
  PHTF2 MUTATED PHTF2 WILD-TYPE 
          7.660           7.545 
[1] "0.5 - 19.8 (7.7)" "0.0 - 49.4 (7.5)"
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"PHTF2 WILD-TYPE" "PHTF2 WILD-TYPE" "PHTF2 WILD-TYPE" "PHTF2 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"PHTF2 WILD-TYPE" "PHTF2 WILD-TYPE" "PHTF2 WILD-TYPE"   "PHTF2 MUTATED" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"PHTF2 WILD-TYPE" "PHTF2 WILD-TYPE" "PHTF2 WILD-TYPE" "PHTF2 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"PHTF2 WILD-TYPE" "PHTF2 WILD-TYPE" "PHTF2 WILD-TYPE" "PHTF2 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
  "PHTF2 MUTATED" "PHTF2 WILD-TYPE" "PHTF2 WILD-TYPE" "PHTF2 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"PHTF2 WILD-TYPE" "PHTF2 WILD-TYPE" "PHTF2 WILD-TYPE" "PHTF2 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"PHTF2 WILD-TYPE" "PHTF2 WILD-TYPE"   "PHTF2 MUTATED" "PHTF2 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"PHTF2 WILD-TYPE" "PHTF2 WILD-TYPE" "PHTF2 WILD-TYPE"   "PHTF2 MUTATED" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"PHTF2 WILD-TYPE" "PHTF2 WILD-TYPE" "PHTF2 WILD-TYPE" "PHTF2 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"PHTF2 WILD-TYPE" "PHTF2 WILD-TYPE" "PHTF2 WILD-TYPE" "PHTF2 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"PHTF2 WILD-TYPE" "PHTF2 WILD-TYPE" "PHTF2 WILD-TYPE"   "PHTF2 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"PHTF2 WILD-TYPE" "PHTF2 WILD-TYPE" "PHTF2 WILD-TYPE" "PHTF2 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"PHTF2 WILD-TYPE" "PHTF2 WILD-TYPE" "PHTF2 WILD-TYPE"   "PHTF2 MUTATED" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
  "PHTF2 MUTATED" "PHTF2 WILD-TYPE" "PHTF2 WILD-TYPE" "PHTF2 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"PHTF2 WILD-TYPE" "PHTF2 WILD-TYPE" "PHTF2 WILD-TYPE" "PHTF2 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"PHTF2 WILD-TYPE" "PHTF2 WILD-TYPE" "PHTF2 WILD-TYPE" "PHTF2 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"PHTF2 WILD-TYPE" "PHTF2 WILD-TYPE" "PHTF2 WILD-TYPE" "PHTF2 WILD-TYPE" 
     TCGA-US-A77J 
"PHTF2 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"PHTF2 WILD-TYPE" "PHTF2 WILD-TYPE" "PHTF2 WILD-TYPE" "PHTF2 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"PHTF2 WILD-TYPE" "PHTF2 WILD-TYPE" "PHTF2 WILD-TYPE"   "PHTF2 MUTATED" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"PHTF2 WILD-TYPE" "PHTF2 WILD-TYPE" "PHTF2 WILD-TYPE" "PHTF2 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"PHTF2 WILD-TYPE" "PHTF2 WILD-TYPE" "PHTF2 WILD-TYPE" "PHTF2 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
  "PHTF2 MUTATED" "PHTF2 WILD-TYPE" "PHTF2 WILD-TYPE" "PHTF2 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"PHTF2 WILD-TYPE" "PHTF2 WILD-TYPE" "PHTF2 WILD-TYPE" "PHTF2 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"PHTF2 WILD-TYPE" "PHTF2 WILD-TYPE"   "PHTF2 MUTATED" "PHTF2 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"PHTF2 WILD-TYPE" "PHTF2 WILD-TYPE" "PHTF2 WILD-TYPE"   "PHTF2 MUTATED" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"PHTF2 WILD-TYPE" "PHTF2 WILD-TYPE" "PHTF2 WILD-TYPE" "PHTF2 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"PHTF2 WILD-TYPE" "PHTF2 WILD-TYPE" "PHTF2 WILD-TYPE" "PHTF2 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"PHTF2 WILD-TYPE" "PHTF2 WILD-TYPE" "PHTF2 WILD-TYPE"   "PHTF2 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"PHTF2 WILD-TYPE" "PHTF2 WILD-TYPE" "PHTF2 WILD-TYPE" "PHTF2 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"PHTF2 WILD-TYPE" "PHTF2 WILD-TYPE" "PHTF2 WILD-TYPE"   "PHTF2 MUTATED" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
  "PHTF2 MUTATED" "PHTF2 WILD-TYPE" "PHTF2 WILD-TYPE" "PHTF2 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"PHTF2 WILD-TYPE" "PHTF2 WILD-TYPE" "PHTF2 WILD-TYPE" "PHTF2 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"PHTF2 WILD-TYPE" "PHTF2 WILD-TYPE" "PHTF2 WILD-TYPE" "PHTF2 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"PHTF2 WILD-TYPE" "PHTF2 WILD-TYPE" "PHTF2 WILD-TYPE" "PHTF2 WILD-TYPE" 
     TCGA-US-A77J 
"PHTF2 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"PHTF2 WILD-TYPE" "PHTF2 WILD-TYPE" "PHTF2 WILD-TYPE" "PHTF2 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"PHTF2 WILD-TYPE" "PHTF2 WILD-TYPE" "PHTF2 WILD-TYPE"   "PHTF2 MUTATED" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"PHTF2 WILD-TYPE" "PHTF2 WILD-TYPE" "PHTF2 WILD-TYPE" "PHTF2 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"PHTF2 WILD-TYPE" "PHTF2 WILD-TYPE" "PHTF2 WILD-TYPE" "PHTF2 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
  "PHTF2 MUTATED" "PHTF2 WILD-TYPE" "PHTF2 WILD-TYPE" "PHTF2 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"PHTF2 WILD-TYPE" "PHTF2 WILD-TYPE" "PHTF2 WILD-TYPE" "PHTF2 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"PHTF2 WILD-TYPE" "PHTF2 WILD-TYPE"   "PHTF2 MUTATED" "PHTF2 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"PHTF2 WILD-TYPE" "PHTF2 WILD-TYPE" "PHTF2 WILD-TYPE"   "PHTF2 MUTATED" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"PHTF2 WILD-TYPE" "PHTF2 WILD-TYPE" "PHTF2 WILD-TYPE" "PHTF2 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"PHTF2 WILD-TYPE" "PHTF2 WILD-TYPE" "PHTF2 WILD-TYPE" "PHTF2 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"PHTF2 WILD-TYPE" "PHTF2 WILD-TYPE" "PHTF2 WILD-TYPE"   "PHTF2 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"PHTF2 WILD-TYPE" "PHTF2 WILD-TYPE" "PHTF2 WILD-TYPE" "PHTF2 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"PHTF2 WILD-TYPE" "PHTF2 WILD-TYPE" "PHTF2 WILD-TYPE"   "PHTF2 MUTATED" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
  "PHTF2 MUTATED" "PHTF2 WILD-TYPE" "PHTF2 WILD-TYPE" "PHTF2 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"PHTF2 WILD-TYPE" "PHTF2 WILD-TYPE" "PHTF2 WILD-TYPE" "PHTF2 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"PHTF2 WILD-TYPE" "PHTF2 WILD-TYPE" "PHTF2 WILD-TYPE" "PHTF2 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"PHTF2 WILD-TYPE" "PHTF2 WILD-TYPE" "PHTF2 WILD-TYPE" "PHTF2 WILD-TYPE" 
     TCGA-US-A77J 
"PHTF2 WILD-TYPE" 
[1] "hr=" "1.2"
D330V2, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  PHTF2 MUTATED          0        0         1         5         1        0
  PHTF2 WILD-TYPE        1        4        10        46         1        3
D330V3, multiclass
                 vv
clus              T1+T2 T3+T4
  PHTF2 MUTATED       0     7
  PHTF2 WILD-TYPE     6    59
D330V4, multiclass
       clus
vv      PHTF2 MUTATED PHTF2 WILD-TYPE
  T1+T2             0               6
  T3+T4             7              59
D330V5, binary
                 cls
clus               0  1
  PHTF2 MUTATED    2  5
  PHTF2 WILD-TYPE 15 49
[1] "tbl2"
                 cls
clus              [,1] [,2]
  PHTF2 MUTATED      2    5
  PHTF2 WILD-TYPE   15   49
   clus
vv  PHTF2 MUTATED PHTF2 WILD-TYPE
  0             2              15
  1             5              49
                 vv
clus              M0 M1 MX
  PHTF2 MUTATED    3  0  4
  PHTF2 WILD-TYPE 36  3 26
D330V6, multiclass
    clus
vv   PHTF2 MUTATED PHTF2 WILD-TYPE
  M0             3              36
  M1             0               3
  MX             4              26
D330V7, binary
                 cls
clus               0  1
  PHTF2 MUTATED    3  4
  PHTF2 WILD-TYPE 33 32
[1] "tbl2"
                 cls
clus              [,1] [,2]
  PHTF2 MUTATED      3    4
  PHTF2 WILD-TYPE   33   32
        clus
vv       PHTF2 MUTATED PHTF2 WILD-TYPE
  FEMALE             3              33
  MALE               4              32
                 vv
clus              PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  PHTF2 MUTATED                                     6
  PHTF2 WILD-TYPE                                  59
                 vv
clus              PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  PHTF2 MUTATED                                       1
  PHTF2 WILD-TYPE                                     3
                 vv
clus              PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  PHTF2 MUTATED                                                  0
  PHTF2 WILD-TYPE                                                2
D330V8, multiclass
                                                  clus
vv                                                 PHTF2 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                          6
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                        1
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA             0
                                                  clus
vv                                                 PHTF2 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                           59
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                          3
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA               2
D330V9, continuous
D330V10, continuous
                 vv
clus              R0 R1 RX
  PHTF2 MUTATED    4  1  0
  PHTF2 WILD-TYPE 38 23  2
D330V11, multiclass
    clus
vv   PHTF2 MUTATED PHTF2 WILD-TYPE
  R0             4              38
  R1             1              23
  RX             0               2
D330V12, continuous

Clustering(331) Variable = HIST1H1B MUTATION ANALYSIS
D331V1, survival
                    sevent
clus2                 0  1
  HIST1H1B MUTATED    2  2
  HIST1H1B WILD-TYPE 38 27
  HIST1H1B MUTATED HIST1H1B WILD-TYPE 
                 4                 65 
  HIST1H1B MUTATED HIST1H1B WILD-TYPE 
                 2                 27 
$`HIST1H1B MUTATED`
TCGA-HZ-8317 TCGA-HZ-A4BH TCGA-IB-7647 TCGA-IB-7651 
        0.53         6.38        21.90        19.82 

$`HIST1H1B WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P5 TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR 
        0.13        11.93        12.66         2.47         0.03         5.46 
TCGA-FZ-5920 TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 
        2.01        36.20        20.81        12.89         7.66        13.02 
TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 
        7.89         0.92         0.66         0.13         0.26        12.13 
TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 
       11.87         0.26         0.62         0.79         0.69         3.95 
TCGA-HZ-8315 TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BK 
        0.92         0.16         2.99         0.76         0.95         1.51 
TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7649 TCGA-IB-7652 TCGA-IB-7885 
       11.41        49.38         4.77        15.35        15.65        27.98 
TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 
        4.04         3.62        43.79        15.81        19.66        16.04 
TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP 
        3.85        15.98         0.56        17.16        10.82         9.86 
TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W 
        7.20        15.12         0.26         1.35         4.18         3.62 
TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
        8.12        13.68        16.80        14.14        18.67 

  HIST1H1B MUTATED HIST1H1B WILD-TYPE 
              0.53               0.03 
  HIST1H1B MUTATED HIST1H1B WILD-TYPE 
             21.90              49.38 
  HIST1H1B MUTATED HIST1H1B WILD-TYPE 
             13.10               7.66 
[1] "0.5 - 21.9 (13.1)" "0.0 - 49.4 (7.7)" 
        TCGA-F2-6879         TCGA-F2-6880         TCGA-F2-7273 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-F2-7276         TCGA-F2-A44G         TCGA-F2-A44H 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-FB-A4P5         TCGA-FB-A4P6         TCGA-FB-A545 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-FB-A5VM         TCGA-FB-A78T         TCGA-FB-A7DR 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-FZ-5920         TCGA-FZ-5922         TCGA-FZ-5923 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-H6-8124         TCGA-H6-A45N         TCGA-H8-A6C1 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-HZ-7289         TCGA-HZ-7918         TCGA-HZ-7919 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-HZ-7922         TCGA-HZ-7923         TCGA-HZ-7924 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-HZ-7925         TCGA-HZ-7926         TCGA-HZ-8001 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-HZ-8002         TCGA-HZ-8003         TCGA-HZ-8005 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-HZ-8315         TCGA-HZ-8317         TCGA-HZ-8636 
"HIST1H1B WILD-TYPE"   "HIST1H1B MUTATED" "HIST1H1B WILD-TYPE" 
        TCGA-HZ-8638         TCGA-HZ-A49G         TCGA-HZ-A49H 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-HZ-A4BH         TCGA-HZ-A4BK         TCGA-IB-7644 
  "HIST1H1B MUTATED" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-IB-7645         TCGA-IB-7646         TCGA-IB-7647 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE"   "HIST1H1B MUTATED" 
        TCGA-IB-7649         TCGA-IB-7651         TCGA-IB-7652 
"HIST1H1B WILD-TYPE"   "HIST1H1B MUTATED" "HIST1H1B WILD-TYPE" 
        TCGA-IB-7885         TCGA-IB-7886         TCGA-IB-7887 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-IB-7888         TCGA-IB-7889         TCGA-IB-7890 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-IB-7891         TCGA-IB-7893         TCGA-IB-7897 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-IB-8126         TCGA-IB-8127         TCGA-IB-A5SO 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-IB-A5SP         TCGA-IB-A5SQ         TCGA-IB-A5SS 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-IB-A5ST         TCGA-IB-A6UG         TCGA-LB-A7SX 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-OE-A75W         TCGA-PZ-A5RE         TCGA-Q3-A5QY 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-US-A779         TCGA-US-A77E         TCGA-US-A77J 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-F2-6879         TCGA-F2-6880         TCGA-F2-7273 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-F2-7276         TCGA-F2-A44G         TCGA-F2-A44H 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-FB-A4P5         TCGA-FB-A4P6         TCGA-FB-A545 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-FB-A5VM         TCGA-FB-A78T         TCGA-FB-A7DR 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-FZ-5920         TCGA-FZ-5922         TCGA-FZ-5923 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-H6-8124         TCGA-H6-A45N         TCGA-H8-A6C1 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-HZ-7289         TCGA-HZ-7918         TCGA-HZ-7919 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-HZ-7922         TCGA-HZ-7923         TCGA-HZ-7924 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-HZ-7925         TCGA-HZ-7926         TCGA-HZ-8001 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-HZ-8002         TCGA-HZ-8003         TCGA-HZ-8005 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-HZ-8315         TCGA-HZ-8317         TCGA-HZ-8636 
"HIST1H1B WILD-TYPE"   "HIST1H1B MUTATED" "HIST1H1B WILD-TYPE" 
        TCGA-HZ-8638         TCGA-HZ-A49G         TCGA-HZ-A49H 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-HZ-A4BH         TCGA-HZ-A4BK         TCGA-IB-7644 
  "HIST1H1B MUTATED" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-IB-7645         TCGA-IB-7646         TCGA-IB-7647 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE"   "HIST1H1B MUTATED" 
        TCGA-IB-7649         TCGA-IB-7651         TCGA-IB-7652 
"HIST1H1B WILD-TYPE"   "HIST1H1B MUTATED" "HIST1H1B WILD-TYPE" 
        TCGA-IB-7885         TCGA-IB-7886         TCGA-IB-7887 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-IB-7888         TCGA-IB-7889         TCGA-IB-7890 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-IB-7891         TCGA-IB-7893         TCGA-IB-7897 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-IB-8126         TCGA-IB-8127         TCGA-IB-A5SO 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-IB-A5SP         TCGA-IB-A5SQ         TCGA-IB-A5SS 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-IB-A5ST         TCGA-IB-A6UG         TCGA-LB-A7SX 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-OE-A75W         TCGA-PZ-A5RE         TCGA-Q3-A5QY 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-US-A779         TCGA-US-A77E         TCGA-US-A77J 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-F2-6879         TCGA-F2-6880         TCGA-F2-7273 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-F2-7276         TCGA-F2-A44G         TCGA-F2-A44H 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-FB-A4P5         TCGA-FB-A4P6         TCGA-FB-A545 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-FB-A5VM         TCGA-FB-A78T         TCGA-FB-A7DR 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-FZ-5920         TCGA-FZ-5922         TCGA-FZ-5923 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-H6-8124         TCGA-H6-A45N         TCGA-H8-A6C1 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-HZ-7289         TCGA-HZ-7918         TCGA-HZ-7919 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-HZ-7922         TCGA-HZ-7923         TCGA-HZ-7924 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-HZ-7925         TCGA-HZ-7926         TCGA-HZ-8001 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-HZ-8002         TCGA-HZ-8003         TCGA-HZ-8005 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-HZ-8315         TCGA-HZ-8317         TCGA-HZ-8636 
"HIST1H1B WILD-TYPE"   "HIST1H1B MUTATED" "HIST1H1B WILD-TYPE" 
        TCGA-HZ-8638         TCGA-HZ-A49G         TCGA-HZ-A49H 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-HZ-A4BH         TCGA-HZ-A4BK         TCGA-IB-7644 
  "HIST1H1B MUTATED" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-IB-7645         TCGA-IB-7646         TCGA-IB-7647 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE"   "HIST1H1B MUTATED" 
        TCGA-IB-7649         TCGA-IB-7651         TCGA-IB-7652 
"HIST1H1B WILD-TYPE"   "HIST1H1B MUTATED" "HIST1H1B WILD-TYPE" 
        TCGA-IB-7885         TCGA-IB-7886         TCGA-IB-7887 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-IB-7888         TCGA-IB-7889         TCGA-IB-7890 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-IB-7891         TCGA-IB-7893         TCGA-IB-7897 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-IB-8126         TCGA-IB-8127         TCGA-IB-A5SO 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-IB-A5SP         TCGA-IB-A5SQ         TCGA-IB-A5SS 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-IB-A5ST         TCGA-IB-A6UG         TCGA-LB-A7SX 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-OE-A75W         TCGA-PZ-A5RE         TCGA-Q3-A5QY 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-US-A779         TCGA-US-A77E         TCGA-US-A77J 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
[1] "hr=" "1.5"
D331V2, continuous
                    vv
clus                 STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  HIST1H1B MUTATED          0        0         0         4         0        0
  HIST1H1B WILD-TYPE        1        4        11        47         2        3
D331V3, multiclass
                    vv
clus                 T1+T2 T3+T4
  HIST1H1B MUTATED       0     4
  HIST1H1B WILD-TYPE     6    62
D331V4, multiclass
       clus
vv      HIST1H1B MUTATED HIST1H1B WILD-TYPE
  T1+T2                0                  6
  T3+T4                4                 62
D331V5, binary
                    cls
clus                  0  1
  HIST1H1B MUTATED    0  4
  HIST1H1B WILD-TYPE 17 50
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  HIST1H1B MUTATED      0    4
  HIST1H1B WILD-TYPE   17   50
   clus
vv  HIST1H1B MUTATED HIST1H1B WILD-TYPE
  0                0                 17
  1                4                 50
                    vv
clus                 M0 M1 MX
  HIST1H1B MUTATED    2  0  2
  HIST1H1B WILD-TYPE 37  3 28
D331V6, multiclass
    clus
vv   HIST1H1B MUTATED HIST1H1B WILD-TYPE
  M0                2                 37
  M1                0                  3
  MX                2                 28
D331V7, binary
                    cls
clus                  0  1
  HIST1H1B MUTATED    3  1
  HIST1H1B WILD-TYPE 33 35
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  HIST1H1B MUTATED      3    1
  HIST1H1B WILD-TYPE   33   35
        clus
vv       HIST1H1B MUTATED HIST1H1B WILD-TYPE
  FEMALE                3                 33
  MALE                  1                 35
                    vv
clus                 PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  HIST1H1B MUTATED                                     4
  HIST1H1B WILD-TYPE                                  61
                    vv
clus                 PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  HIST1H1B MUTATED                                       0
  HIST1H1B WILD-TYPE                                     4
                    vv
clus                 PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  HIST1H1B MUTATED                                                  0
  HIST1H1B WILD-TYPE                                                2
D331V8, multiclass
                                                  clus
vv                                                 HIST1H1B MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                             4
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                           0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                0
                                                  clus
vv                                                 HIST1H1B WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                              61
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                             4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                  2
D331V9, continuous
[1] "Remove cluster labels:" "HIST1H1B MUTATED"      
clus
  HIST1H1B MUTATED HIST1H1B WILD-TYPE 
                 1                 21 
        TCGA-F2-6880         TCGA-FB-A4P5         TCGA-FB-A4P6 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-FB-A5VM         TCGA-FB-A78T         TCGA-FB-A7DR 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-H6-8124         TCGA-H6-A45N         TCGA-H8-A6C1 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-IB-7644         TCGA-IB-7649         TCGA-IB-7885 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-IB-7886         TCGA-IB-7887         TCGA-IB-7891 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-IB-8126         TCGA-IB-8127         TCGA-IB-A5SS 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-IB-A6UG         TCGA-LB-A7SX         TCGA-OE-A75W 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
D331V10, continuous
[1] "Remove cluster labels:" "HIST1H1B MUTATED"      
clus
  HIST1H1B MUTATED HIST1H1B WILD-TYPE 
                 1                 18 
        TCGA-FB-A4P5         TCGA-FB-A4P6         TCGA-FB-A5VM 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-FB-A78T         TCGA-FB-A7DR         TCGA-H6-8124 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-H8-A6C1         TCGA-IB-7644         TCGA-IB-7649 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-IB-7885         TCGA-IB-7886         TCGA-IB-7891 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-IB-8126         TCGA-IB-8127         TCGA-IB-A5SS 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
        TCGA-IB-A6UG         TCGA-LB-A7SX         TCGA-OE-A75W 
"HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" "HIST1H1B WILD-TYPE" 
                    vv
clus                 R0 R1 RX
  HIST1H1B MUTATED    1  3  0
  HIST1H1B WILD-TYPE 41 21  2
D331V11, multiclass
    clus
vv   HIST1H1B MUTATED HIST1H1B WILD-TYPE
  R0                1                 41
  R1                3                 21
  RX                0                  2
D331V12, continuous

Clustering(332) Variable = UTRN MUTATION ANALYSIS
D332V1, survival
                sevent
clus2             0  1
  UTRN MUTATED    3  2
  UTRN WILD-TYPE 37 27
  UTRN MUTATED UTRN WILD-TYPE 
             5             64 
  UTRN MUTATED UTRN WILD-TYPE 
             2             27 
$`UTRN MUTATED`
TCGA-HZ-8315 TCGA-HZ-A49G TCGA-IB-7651 TCGA-IB-7887 TCGA-IB-8127 
        0.92         0.76        19.82         3.62        17.16 

$`UTRN WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P5 TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR 
        0.13        11.93        12.66         2.47         0.03         5.46 
TCGA-FZ-5920 TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 
        2.01        36.20        20.81        12.89         7.66        13.02 
TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 
        7.89         0.92         0.66         0.13         0.26        12.13 
TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 
       11.87         0.26         0.62         0.79         0.69         3.95 
TCGA-HZ-8317 TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK 
        0.53         0.16         2.99         0.95         6.38         1.51 
TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7652 
       11.41        49.38         4.77        21.90        15.35        15.65 
TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 
       27.98         4.04        43.79        15.81        19.66        16.04 
TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ 
        3.85        15.98         0.56        10.82         9.86         7.20 
TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W TCGA-PZ-A5RE 
       15.12         0.26         1.35         4.18         3.62         8.12 
TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
       13.68        16.80        14.14        18.67 

  UTRN MUTATED UTRN WILD-TYPE 
          0.76           0.03 
  UTRN MUTATED UTRN WILD-TYPE 
         19.82          49.38 
  UTRN MUTATED UTRN WILD-TYPE 
         3.620          7.775 
[1] "0.8 - 19.8 (3.6)" "0.0 - 49.4 (7.8)"
    TCGA-F2-6879     TCGA-F2-6880     TCGA-F2-7273     TCGA-F2-7276 
"UTRN WILD-TYPE" "UTRN WILD-TYPE" "UTRN WILD-TYPE" "UTRN WILD-TYPE" 
    TCGA-F2-A44G     TCGA-F2-A44H     TCGA-FB-A4P5     TCGA-FB-A4P6 
"UTRN WILD-TYPE" "UTRN WILD-TYPE" "UTRN WILD-TYPE" "UTRN WILD-TYPE" 
    TCGA-FB-A545     TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-FB-A7DR 
"UTRN WILD-TYPE" "UTRN WILD-TYPE" "UTRN WILD-TYPE" "UTRN WILD-TYPE" 
    TCGA-FZ-5920     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-H6-8124 
"UTRN WILD-TYPE" "UTRN WILD-TYPE" "UTRN WILD-TYPE" "UTRN WILD-TYPE" 
    TCGA-H6-A45N     TCGA-H8-A6C1     TCGA-HZ-7289     TCGA-HZ-7918 
"UTRN WILD-TYPE" "UTRN WILD-TYPE" "UTRN WILD-TYPE" "UTRN WILD-TYPE" 
    TCGA-HZ-7919     TCGA-HZ-7922     TCGA-HZ-7923     TCGA-HZ-7924 
"UTRN WILD-TYPE" "UTRN WILD-TYPE" "UTRN WILD-TYPE" "UTRN WILD-TYPE" 
    TCGA-HZ-7925     TCGA-HZ-7926     TCGA-HZ-8001     TCGA-HZ-8002 
"UTRN WILD-TYPE" "UTRN WILD-TYPE" "UTRN WILD-TYPE" "UTRN WILD-TYPE" 
    TCGA-HZ-8003     TCGA-HZ-8005     TCGA-HZ-8315     TCGA-HZ-8317 
"UTRN WILD-TYPE" "UTRN WILD-TYPE"   "UTRN MUTATED" "UTRN WILD-TYPE" 
    TCGA-HZ-8636     TCGA-HZ-8638     TCGA-HZ-A49G     TCGA-HZ-A49H 
"UTRN WILD-TYPE" "UTRN WILD-TYPE"   "UTRN MUTATED" "UTRN WILD-TYPE" 
    TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-IB-7644     TCGA-IB-7645 
"UTRN WILD-TYPE" "UTRN WILD-TYPE" "UTRN WILD-TYPE" "UTRN WILD-TYPE" 
    TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7651 
"UTRN WILD-TYPE" "UTRN WILD-TYPE" "UTRN WILD-TYPE"   "UTRN MUTATED" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887 
"UTRN WILD-TYPE" "UTRN WILD-TYPE" "UTRN WILD-TYPE"   "UTRN MUTATED" 
    TCGA-IB-7888     TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891 
"UTRN WILD-TYPE" "UTRN WILD-TYPE" "UTRN WILD-TYPE" "UTRN WILD-TYPE" 
    TCGA-IB-7893     TCGA-IB-7897     TCGA-IB-8126     TCGA-IB-8127 
"UTRN WILD-TYPE" "UTRN WILD-TYPE" "UTRN WILD-TYPE"   "UTRN MUTATED" 
    TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS 
"UTRN WILD-TYPE" "UTRN WILD-TYPE" "UTRN WILD-TYPE" "UTRN WILD-TYPE" 
    TCGA-IB-A5ST     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
"UTRN WILD-TYPE" "UTRN WILD-TYPE" "UTRN WILD-TYPE" "UTRN WILD-TYPE" 
    TCGA-PZ-A5RE     TCGA-Q3-A5QY     TCGA-US-A779     TCGA-US-A77E 
"UTRN WILD-TYPE" "UTRN WILD-TYPE" "UTRN WILD-TYPE" "UTRN WILD-TYPE" 
    TCGA-US-A77J 
"UTRN WILD-TYPE" 
    TCGA-F2-6879     TCGA-F2-6880     TCGA-F2-7273     TCGA-F2-7276 
"UTRN WILD-TYPE" "UTRN WILD-TYPE" "UTRN WILD-TYPE" "UTRN WILD-TYPE" 
    TCGA-F2-A44G     TCGA-F2-A44H     TCGA-FB-A4P5     TCGA-FB-A4P6 
"UTRN WILD-TYPE" "UTRN WILD-TYPE" "UTRN WILD-TYPE" "UTRN WILD-TYPE" 
    TCGA-FB-A545     TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-FB-A7DR 
"UTRN WILD-TYPE" "UTRN WILD-TYPE" "UTRN WILD-TYPE" "UTRN WILD-TYPE" 
    TCGA-FZ-5920     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-H6-8124 
"UTRN WILD-TYPE" "UTRN WILD-TYPE" "UTRN WILD-TYPE" "UTRN WILD-TYPE" 
    TCGA-H6-A45N     TCGA-H8-A6C1     TCGA-HZ-7289     TCGA-HZ-7918 
"UTRN WILD-TYPE" "UTRN WILD-TYPE" "UTRN WILD-TYPE" "UTRN WILD-TYPE" 
    TCGA-HZ-7919     TCGA-HZ-7922     TCGA-HZ-7923     TCGA-HZ-7924 
"UTRN WILD-TYPE" "UTRN WILD-TYPE" "UTRN WILD-TYPE" "UTRN WILD-TYPE" 
    TCGA-HZ-7925     TCGA-HZ-7926     TCGA-HZ-8001     TCGA-HZ-8002 
"UTRN WILD-TYPE" "UTRN WILD-TYPE" "UTRN WILD-TYPE" "UTRN WILD-TYPE" 
    TCGA-HZ-8003     TCGA-HZ-8005     TCGA-HZ-8315     TCGA-HZ-8317 
"UTRN WILD-TYPE" "UTRN WILD-TYPE"   "UTRN MUTATED" "UTRN WILD-TYPE" 
    TCGA-HZ-8636     TCGA-HZ-8638     TCGA-HZ-A49G     TCGA-HZ-A49H 
"UTRN WILD-TYPE" "UTRN WILD-TYPE"   "UTRN MUTATED" "UTRN WILD-TYPE" 
    TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-IB-7644     TCGA-IB-7645 
"UTRN WILD-TYPE" "UTRN WILD-TYPE" "UTRN WILD-TYPE" "UTRN WILD-TYPE" 
    TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7651 
"UTRN WILD-TYPE" "UTRN WILD-TYPE" "UTRN WILD-TYPE"   "UTRN MUTATED" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887 
"UTRN WILD-TYPE" "UTRN WILD-TYPE" "UTRN WILD-TYPE"   "UTRN MUTATED" 
    TCGA-IB-7888     TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891 
"UTRN WILD-TYPE" "UTRN WILD-TYPE" "UTRN WILD-TYPE" "UTRN WILD-TYPE" 
    TCGA-IB-7893     TCGA-IB-7897     TCGA-IB-8126     TCGA-IB-8127 
"UTRN WILD-TYPE" "UTRN WILD-TYPE" "UTRN WILD-TYPE"   "UTRN MUTATED" 
    TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS 
"UTRN WILD-TYPE" "UTRN WILD-TYPE" "UTRN WILD-TYPE" "UTRN WILD-TYPE" 
    TCGA-IB-A5ST     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
"UTRN WILD-TYPE" "UTRN WILD-TYPE" "UTRN WILD-TYPE" "UTRN WILD-TYPE" 
    TCGA-PZ-A5RE     TCGA-Q3-A5QY     TCGA-US-A779     TCGA-US-A77E 
"UTRN WILD-TYPE" "UTRN WILD-TYPE" "UTRN WILD-TYPE" "UTRN WILD-TYPE" 
    TCGA-US-A77J 
"UTRN WILD-TYPE" 
    TCGA-F2-6879     TCGA-F2-6880     TCGA-F2-7273     TCGA-F2-7276 
"UTRN WILD-TYPE" "UTRN WILD-TYPE" "UTRN WILD-TYPE" "UTRN WILD-TYPE" 
    TCGA-F2-A44G     TCGA-F2-A44H     TCGA-FB-A4P5     TCGA-FB-A4P6 
"UTRN WILD-TYPE" "UTRN WILD-TYPE" "UTRN WILD-TYPE" "UTRN WILD-TYPE" 
    TCGA-FB-A545     TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-FB-A7DR 
"UTRN WILD-TYPE" "UTRN WILD-TYPE" "UTRN WILD-TYPE" "UTRN WILD-TYPE" 
    TCGA-FZ-5920     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-H6-8124 
"UTRN WILD-TYPE" "UTRN WILD-TYPE" "UTRN WILD-TYPE" "UTRN WILD-TYPE" 
    TCGA-H6-A45N     TCGA-H8-A6C1     TCGA-HZ-7289     TCGA-HZ-7918 
"UTRN WILD-TYPE" "UTRN WILD-TYPE" "UTRN WILD-TYPE" "UTRN WILD-TYPE" 
    TCGA-HZ-7919     TCGA-HZ-7922     TCGA-HZ-7923     TCGA-HZ-7924 
"UTRN WILD-TYPE" "UTRN WILD-TYPE" "UTRN WILD-TYPE" "UTRN WILD-TYPE" 
    TCGA-HZ-7925     TCGA-HZ-7926     TCGA-HZ-8001     TCGA-HZ-8002 
"UTRN WILD-TYPE" "UTRN WILD-TYPE" "UTRN WILD-TYPE" "UTRN WILD-TYPE" 
    TCGA-HZ-8003     TCGA-HZ-8005     TCGA-HZ-8315     TCGA-HZ-8317 
"UTRN WILD-TYPE" "UTRN WILD-TYPE"   "UTRN MUTATED" "UTRN WILD-TYPE" 
    TCGA-HZ-8636     TCGA-HZ-8638     TCGA-HZ-A49G     TCGA-HZ-A49H 
"UTRN WILD-TYPE" "UTRN WILD-TYPE"   "UTRN MUTATED" "UTRN WILD-TYPE" 
    TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-IB-7644     TCGA-IB-7645 
"UTRN WILD-TYPE" "UTRN WILD-TYPE" "UTRN WILD-TYPE" "UTRN WILD-TYPE" 
    TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7651 
"UTRN WILD-TYPE" "UTRN WILD-TYPE" "UTRN WILD-TYPE"   "UTRN MUTATED" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887 
"UTRN WILD-TYPE" "UTRN WILD-TYPE" "UTRN WILD-TYPE"   "UTRN MUTATED" 
    TCGA-IB-7888     TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891 
"UTRN WILD-TYPE" "UTRN WILD-TYPE" "UTRN WILD-TYPE" "UTRN WILD-TYPE" 
    TCGA-IB-7893     TCGA-IB-7897     TCGA-IB-8126     TCGA-IB-8127 
"UTRN WILD-TYPE" "UTRN WILD-TYPE" "UTRN WILD-TYPE"   "UTRN MUTATED" 
    TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS 
"UTRN WILD-TYPE" "UTRN WILD-TYPE" "UTRN WILD-TYPE" "UTRN WILD-TYPE" 
    TCGA-IB-A5ST     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
"UTRN WILD-TYPE" "UTRN WILD-TYPE" "UTRN WILD-TYPE" "UTRN WILD-TYPE" 
    TCGA-PZ-A5RE     TCGA-Q3-A5QY     TCGA-US-A779     TCGA-US-A77E 
"UTRN WILD-TYPE" "UTRN WILD-TYPE" "UTRN WILD-TYPE" "UTRN WILD-TYPE" 
    TCGA-US-A77J 
"UTRN WILD-TYPE" 
[1] "hr=" "1"  
D332V2, continuous
                vv
clus             STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  UTRN MUTATED          0        0         1         4         0        0
  UTRN WILD-TYPE        1        4        10        47         2        3
D332V3, multiclass
                vv
clus             T1+T2 T3+T4
  UTRN MUTATED       1     4
  UTRN WILD-TYPE     5    62
D332V4, multiclass
       clus
vv      UTRN MUTATED UTRN WILD-TYPE
  T1+T2            1              5
  T3+T4            4             62
D332V5, binary
                cls
clus              0  1
  UTRN MUTATED    1  4
  UTRN WILD-TYPE 16 50
[1] "tbl2"
                cls
clus             [,1] [,2]
  UTRN MUTATED      1    4
  UTRN WILD-TYPE   16   50
   clus
vv  UTRN MUTATED UTRN WILD-TYPE
  0            1             16
  1            4             50
                vv
clus             M0 M1 MX
  UTRN MUTATED    3  0  2
  UTRN WILD-TYPE 36  3 28
D332V6, multiclass
    clus
vv   UTRN MUTATED UTRN WILD-TYPE
  M0            3             36
  M1            0              3
  MX            2             28
D332V7, binary
                cls
clus              0  1
  UTRN MUTATED    4  1
  UTRN WILD-TYPE 32 35
[1] "tbl2"
                cls
clus             [,1] [,2]
  UTRN MUTATED      4    1
  UTRN WILD-TYPE   32   35
        clus
vv       UTRN MUTATED UTRN WILD-TYPE
  FEMALE            4             32
  MALE              1             35
                vv
clus             PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  UTRN MUTATED                                     5
  UTRN WILD-TYPE                                  60
                vv
clus             PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  UTRN MUTATED                                       0
  UTRN WILD-TYPE                                     4
                vv
clus             PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  UTRN MUTATED                                                  0
  UTRN WILD-TYPE                                                2
D332V8, multiclass
                                                  clus
vv                                                 UTRN MUTATED UTRN WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                         5             60
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                       0              4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA            0              2
D332V9, continuous
D332V10, continuous
[1] "Remove cluster labels:" "UTRN MUTATED"          
clus
  UTRN MUTATED UTRN WILD-TYPE 
             2             17 
    TCGA-FB-A4P5     TCGA-FB-A4P6     TCGA-FB-A5VM     TCGA-FB-A78T 
"UTRN WILD-TYPE" "UTRN WILD-TYPE" "UTRN WILD-TYPE" "UTRN WILD-TYPE" 
    TCGA-FB-A7DR     TCGA-H6-8124     TCGA-H8-A6C1     TCGA-IB-7644 
"UTRN WILD-TYPE" "UTRN WILD-TYPE" "UTRN WILD-TYPE" "UTRN WILD-TYPE" 
    TCGA-IB-7649     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7891 
"UTRN WILD-TYPE" "UTRN WILD-TYPE" "UTRN WILD-TYPE" "UTRN WILD-TYPE" 
    TCGA-IB-8126     TCGA-IB-A5SS     TCGA-IB-A6UG     TCGA-LB-A7SX 
"UTRN WILD-TYPE" "UTRN WILD-TYPE" "UTRN WILD-TYPE" "UTRN WILD-TYPE" 
    TCGA-OE-A75W 
"UTRN WILD-TYPE" 
                vv
clus             R0 R1 RX
  UTRN MUTATED    1  4  0
  UTRN WILD-TYPE 41 20  2
D332V11, multiclass
    clus
vv   UTRN MUTATED UTRN WILD-TYPE
  R0            1             41
  R1            4             20
  RX            0              2
D332V12, continuous

Clustering(333) Variable = MAGEC1 MUTATION ANALYSIS
D333V1, survival
                  sevent
clus2               0  1
  MAGEC1 MUTATED    7  4
  MAGEC1 WILD-TYPE 33 25
  MAGEC1 MUTATED MAGEC1 WILD-TYPE 
              11               58 
  MAGEC1 MUTATED MAGEC1 WILD-TYPE 
               4               25 
$`MAGEC1 MUTATED`
TCGA-F2-A44H TCGA-FB-A545 TCGA-FB-A7DR TCGA-HZ-7924 TCGA-HZ-8002 TCGA-IB-7645 
       19.27        12.66         5.46        12.13         0.79        49.38 
TCGA-IB-7651 TCGA-IB-7888 TCGA-IB-7893 TCGA-IB-8127 TCGA-PZ-A5RE 
       19.82        43.79         3.85        17.16         8.12 

$`MAGEC1 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-FB-A4P5 
       10.98         9.70        11.84         7.10         5.03         0.13 
TCGA-FB-A4P6 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FZ-5920 TCGA-FZ-5922 TCGA-FZ-5923 
       11.93         2.47         0.03         2.01        36.20        20.81 
TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-7919 
       12.89         7.66        13.02         7.89         0.92         0.66 
TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8003 
        0.13         0.26        11.87         0.26         0.62         0.69 
TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G 
        3.95         0.92         0.53         0.16         2.99         0.76 
TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7646 TCGA-IB-7647 
        0.95         6.38         1.51        11.41         4.77        21.90 
TCGA-IB-7649 TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7889 
       15.35        15.65        27.98         4.04         3.62        15.81 
TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-A5SO TCGA-IB-A5SP 
       19.66        16.04        15.98         0.56        10.82         9.86 
TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W 
        7.20        15.12         0.26         1.35         4.18         3.62 
TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
       13.68        16.80        14.14        18.67 

  MAGEC1 MUTATED MAGEC1 WILD-TYPE 
            0.79             0.03 
  MAGEC1 MUTATED MAGEC1 WILD-TYPE 
           49.38            36.20 
  MAGEC1 MUTATED MAGEC1 WILD-TYPE 
           12.66             6.74 
[1] "0.8 - 49.4 (12.7)" "0.0 - 36.2 (6.7)" 
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
"MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"MAGEC1 WILD-TYPE"   "MAGEC1 MUTATED" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
  "MAGEC1 MUTATED" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE"   "MAGEC1 MUTATED" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
"MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
"MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE"   "MAGEC1 MUTATED" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE"   "MAGEC1 MUTATED" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
"MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
"MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
"MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE"   "MAGEC1 MUTATED" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
"MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE"   "MAGEC1 MUTATED" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
"MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
  "MAGEC1 MUTATED" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
  "MAGEC1 MUTATED" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE"   "MAGEC1 MUTATED" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
  "MAGEC1 MUTATED" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-US-A77J 
"MAGEC1 WILD-TYPE" 
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
"MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"MAGEC1 WILD-TYPE"   "MAGEC1 MUTATED" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
  "MAGEC1 MUTATED" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE"   "MAGEC1 MUTATED" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
"MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
"MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE"   "MAGEC1 MUTATED" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE"   "MAGEC1 MUTATED" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
"MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
"MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
"MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE"   "MAGEC1 MUTATED" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
"MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE"   "MAGEC1 MUTATED" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
"MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
  "MAGEC1 MUTATED" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
  "MAGEC1 MUTATED" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE"   "MAGEC1 MUTATED" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
  "MAGEC1 MUTATED" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-US-A77J 
"MAGEC1 WILD-TYPE" 
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
"MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"MAGEC1 WILD-TYPE"   "MAGEC1 MUTATED" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
  "MAGEC1 MUTATED" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE"   "MAGEC1 MUTATED" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
"MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
"MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE"   "MAGEC1 MUTATED" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE"   "MAGEC1 MUTATED" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
"MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
"MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
"MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE"   "MAGEC1 MUTATED" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
"MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE"   "MAGEC1 MUTATED" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
"MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
  "MAGEC1 MUTATED" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
  "MAGEC1 MUTATED" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE"   "MAGEC1 MUTATED" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
  "MAGEC1 MUTATED" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-US-A77J 
"MAGEC1 WILD-TYPE" 
[1] "hr=" "5.5"
D333V2, continuous
                  vv
clus               STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  MAGEC1 MUTATED          0        1         5         6         0        0
  MAGEC1 WILD-TYPE        1        3         6        45         2        3
D333V3, multiclass
                  vv
clus               T1+T2 T3+T4
  MAGEC1 MUTATED       1    11
  MAGEC1 WILD-TYPE     5    55
D333V4, multiclass
       clus
vv      MAGEC1 MUTATED MAGEC1 WILD-TYPE
  T1+T2              1                5
  T3+T4             11               55
D333V5, binary
                  cls
clus                0  1
  MAGEC1 MUTATED    5  6
  MAGEC1 WILD-TYPE 12 48
[1] "tbl2"
                  cls
clus               [,1] [,2]
  MAGEC1 MUTATED      5    6
  MAGEC1 WILD-TYPE   12   48
   clus
vv  MAGEC1 MUTATED MAGEC1 WILD-TYPE
  0              5               12
  1              6               48
                  vv
clus               M0 M1 MX
  MAGEC1 MUTATED    8  0  4
  MAGEC1 WILD-TYPE 31  3 26
D333V6, multiclass
    clus
vv   MAGEC1 MUTATED MAGEC1 WILD-TYPE
  M0              8               31
  M1              0                3
  MX              4               26
D333V7, binary
                  cls
clus                0  1
  MAGEC1 MUTATED    6  6
  MAGEC1 WILD-TYPE 30 30
[1] "tbl2"
                  cls
clus               [,1] [,2]
  MAGEC1 MUTATED      6    6
  MAGEC1 WILD-TYPE   30   30
        clus
vv       MAGEC1 MUTATED MAGEC1 WILD-TYPE
  FEMALE              6               30
  MALE                6               30
                  vv
clus               PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  MAGEC1 MUTATED                                    11
  MAGEC1 WILD-TYPE                                  54
                  vv
clus               PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  MAGEC1 MUTATED                                       0
  MAGEC1 WILD-TYPE                                     4
                  vv
clus               PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  MAGEC1 MUTATED                                                  1
  MAGEC1 WILD-TYPE                                                1
D333V8, multiclass
                                                  clus
vv                                                 MAGEC1 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                          11
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                         0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA              1
                                                  clus
vv                                                 MAGEC1 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                            54
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                           4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                1
D333V9, continuous
D333V10, continuous
                  vv
clus               R0 R1 RX
  MAGEC1 MUTATED    9  1  0
  MAGEC1 WILD-TYPE 33 23  2
D333V11, multiclass
    clus
vv   MAGEC1 MUTATED MAGEC1 WILD-TYPE
  R0              9               33
  R1              1               23
  RX              0                2
D333V12, continuous

Clustering(334) Variable = NUDT19 MUTATION ANALYSIS
D334V1, survival
                  sevent
clus2               0  1
  NUDT19 MUTATED    1  3
  NUDT19 WILD-TYPE 39 26
  NUDT19 MUTATED NUDT19 WILD-TYPE 
               4               65 
  NUDT19 MUTATED NUDT19 WILD-TYPE 
               3               26 
$`NUDT19 MUTATED`
TCGA-IB-7647 TCGA-IB-7651 TCGA-IB-7897 TCGA-PZ-A5RE 
       21.90        19.82        15.98         8.12 

$`NUDT19 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P5 TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR 
        0.13        11.93        12.66         2.47         0.03         5.46 
TCGA-FZ-5920 TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 
        2.01        36.20        20.81        12.89         7.66        13.02 
TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 
        7.89         0.92         0.66         0.13         0.26        12.13 
TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 
       11.87         0.26         0.62         0.79         0.69         3.95 
TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H 
        0.92         0.53         0.16         2.99         0.76         0.95 
TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7649 
        6.38         1.51        11.41        49.38         4.77        15.35 
TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 
       15.65        27.98         4.04         3.62        43.79        15.81 
TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO 
       19.66        16.04         3.85         0.56        17.16        10.82 
TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX 
        9.86         7.20        15.12         0.26         1.35         4.18 
TCGA-OE-A75W TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
        3.62        13.68        16.80        14.14        18.67 

  NUDT19 MUTATED NUDT19 WILD-TYPE 
            8.12             0.03 
  NUDT19 MUTATED NUDT19 WILD-TYPE 
           21.90            49.38 
  NUDT19 MUTATED NUDT19 WILD-TYPE 
            17.9              7.1 
[1] "8.1 - 21.9 (17.9)" "0.0 - 49.4 (7.1)" 
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
"NUDT19 WILD-TYPE" "NUDT19 WILD-TYPE" "NUDT19 WILD-TYPE" "NUDT19 WILD-TYPE" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"NUDT19 WILD-TYPE" "NUDT19 WILD-TYPE" "NUDT19 WILD-TYPE" "NUDT19 WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
"NUDT19 WILD-TYPE" "NUDT19 WILD-TYPE" "NUDT19 WILD-TYPE" "NUDT19 WILD-TYPE" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"NUDT19 WILD-TYPE" "NUDT19 WILD-TYPE" "NUDT19 WILD-TYPE" "NUDT19 WILD-TYPE" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
"NUDT19 WILD-TYPE" "NUDT19 WILD-TYPE" "NUDT19 WILD-TYPE" "NUDT19 WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
"NUDT19 WILD-TYPE" "NUDT19 WILD-TYPE" "NUDT19 WILD-TYPE" "NUDT19 WILD-TYPE" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"NUDT19 WILD-TYPE" "NUDT19 WILD-TYPE" "NUDT19 WILD-TYPE" "NUDT19 WILD-TYPE" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
"NUDT19 WILD-TYPE" "NUDT19 WILD-TYPE" "NUDT19 WILD-TYPE" "NUDT19 WILD-TYPE" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
"NUDT19 WILD-TYPE" "NUDT19 WILD-TYPE" "NUDT19 WILD-TYPE" "NUDT19 WILD-TYPE" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
"NUDT19 WILD-TYPE" "NUDT19 WILD-TYPE" "NUDT19 WILD-TYPE" "NUDT19 WILD-TYPE" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
"NUDT19 WILD-TYPE"   "NUDT19 MUTATED" "NUDT19 WILD-TYPE"   "NUDT19 MUTATED" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
"NUDT19 WILD-TYPE" "NUDT19 WILD-TYPE" "NUDT19 WILD-TYPE" "NUDT19 WILD-TYPE" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
"NUDT19 WILD-TYPE" "NUDT19 WILD-TYPE" "NUDT19 WILD-TYPE" "NUDT19 WILD-TYPE" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
"NUDT19 WILD-TYPE"   "NUDT19 MUTATED" "NUDT19 WILD-TYPE" "NUDT19 WILD-TYPE" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"NUDT19 WILD-TYPE" "NUDT19 WILD-TYPE" "NUDT19 WILD-TYPE" "NUDT19 WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"NUDT19 WILD-TYPE" "NUDT19 WILD-TYPE" "NUDT19 WILD-TYPE" "NUDT19 WILD-TYPE" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
  "NUDT19 MUTATED" "NUDT19 WILD-TYPE" "NUDT19 WILD-TYPE" "NUDT19 WILD-TYPE" 
      TCGA-US-A77J 
"NUDT19 WILD-TYPE" 
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
"NUDT19 WILD-TYPE" "NUDT19 WILD-TYPE" "NUDT19 WILD-TYPE" "NUDT19 WILD-TYPE" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"NUDT19 WILD-TYPE" "NUDT19 WILD-TYPE" "NUDT19 WILD-TYPE" "NUDT19 WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
"NUDT19 WILD-TYPE" "NUDT19 WILD-TYPE" "NUDT19 WILD-TYPE" "NUDT19 WILD-TYPE" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"NUDT19 WILD-TYPE" "NUDT19 WILD-TYPE" "NUDT19 WILD-TYPE" "NUDT19 WILD-TYPE" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
"NUDT19 WILD-TYPE" "NUDT19 WILD-TYPE" "NUDT19 WILD-TYPE" "NUDT19 WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
"NUDT19 WILD-TYPE" "NUDT19 WILD-TYPE" "NUDT19 WILD-TYPE" "NUDT19 WILD-TYPE" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"NUDT19 WILD-TYPE" "NUDT19 WILD-TYPE" "NUDT19 WILD-TYPE" "NUDT19 WILD-TYPE" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
"NUDT19 WILD-TYPE" "NUDT19 WILD-TYPE" "NUDT19 WILD-TYPE" "NUDT19 WILD-TYPE" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
"NUDT19 WILD-TYPE" "NUDT19 WILD-TYPE" "NUDT19 WILD-TYPE" "NUDT19 WILD-TYPE" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
"NUDT19 WILD-TYPE" "NUDT19 WILD-TYPE" "NUDT19 WILD-TYPE" "NUDT19 WILD-TYPE" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
"NUDT19 WILD-TYPE"   "NUDT19 MUTATED" "NUDT19 WILD-TYPE"   "NUDT19 MUTATED" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
"NUDT19 WILD-TYPE" "NUDT19 WILD-TYPE" "NUDT19 WILD-TYPE" "NUDT19 WILD-TYPE" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
"NUDT19 WILD-TYPE" "NUDT19 WILD-TYPE" "NUDT19 WILD-TYPE" "NUDT19 WILD-TYPE" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
"NUDT19 WILD-TYPE"   "NUDT19 MUTATED" "NUDT19 WILD-TYPE" "NUDT19 WILD-TYPE" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"NUDT19 WILD-TYPE" "NUDT19 WILD-TYPE" "NUDT19 WILD-TYPE" "NUDT19 WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"NUDT19 WILD-TYPE" "NUDT19 WILD-TYPE" "NUDT19 WILD-TYPE" "NUDT19 WILD-TYPE" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
  "NUDT19 MUTATED" "NUDT19 WILD-TYPE" "NUDT19 WILD-TYPE" "NUDT19 WILD-TYPE" 
      TCGA-US-A77J 
"NUDT19 WILD-TYPE" 
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
"NUDT19 WILD-TYPE" "NUDT19 WILD-TYPE" "NUDT19 WILD-TYPE" "NUDT19 WILD-TYPE" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"NUDT19 WILD-TYPE" "NUDT19 WILD-TYPE" "NUDT19 WILD-TYPE" "NUDT19 WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
"NUDT19 WILD-TYPE" "NUDT19 WILD-TYPE" "NUDT19 WILD-TYPE" "NUDT19 WILD-TYPE" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"NUDT19 WILD-TYPE" "NUDT19 WILD-TYPE" "NUDT19 WILD-TYPE" "NUDT19 WILD-TYPE" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
"NUDT19 WILD-TYPE" "NUDT19 WILD-TYPE" "NUDT19 WILD-TYPE" "NUDT19 WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
"NUDT19 WILD-TYPE" "NUDT19 WILD-TYPE" "NUDT19 WILD-TYPE" "NUDT19 WILD-TYPE" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"NUDT19 WILD-TYPE" "NUDT19 WILD-TYPE" "NUDT19 WILD-TYPE" "NUDT19 WILD-TYPE" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
"NUDT19 WILD-TYPE" "NUDT19 WILD-TYPE" "NUDT19 WILD-TYPE" "NUDT19 WILD-TYPE" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
"NUDT19 WILD-TYPE" "NUDT19 WILD-TYPE" "NUDT19 WILD-TYPE" "NUDT19 WILD-TYPE" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
"NUDT19 WILD-TYPE" "NUDT19 WILD-TYPE" "NUDT19 WILD-TYPE" "NUDT19 WILD-TYPE" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
"NUDT19 WILD-TYPE"   "NUDT19 MUTATED" "NUDT19 WILD-TYPE"   "NUDT19 MUTATED" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
"NUDT19 WILD-TYPE" "NUDT19 WILD-TYPE" "NUDT19 WILD-TYPE" "NUDT19 WILD-TYPE" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
"NUDT19 WILD-TYPE" "NUDT19 WILD-TYPE" "NUDT19 WILD-TYPE" "NUDT19 WILD-TYPE" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
"NUDT19 WILD-TYPE"   "NUDT19 MUTATED" "NUDT19 WILD-TYPE" "NUDT19 WILD-TYPE" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"NUDT19 WILD-TYPE" "NUDT19 WILD-TYPE" "NUDT19 WILD-TYPE" "NUDT19 WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"NUDT19 WILD-TYPE" "NUDT19 WILD-TYPE" "NUDT19 WILD-TYPE" "NUDT19 WILD-TYPE" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
  "NUDT19 MUTATED" "NUDT19 WILD-TYPE" "NUDT19 WILD-TYPE" "NUDT19 WILD-TYPE" 
      TCGA-US-A77J 
"NUDT19 WILD-TYPE" 
[1] "hr=" "1.2"
D334V2, continuous
                  vv
clus               STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  NUDT19 MUTATED          0        0         0         4         0        0
  NUDT19 WILD-TYPE        1        4        11        47         2        3
D334V3, multiclass
                  vv
clus               T1+T2 T3+T4
  NUDT19 MUTATED       0     4
  NUDT19 WILD-TYPE     6    62
D334V4, multiclass
       clus
vv      NUDT19 MUTATED NUDT19 WILD-TYPE
  T1+T2              0                6
  T3+T4              4               62
D334V5, binary
                  cls
clus                0  1
  NUDT19 MUTATED    0  4
  NUDT19 WILD-TYPE 17 50
[1] "tbl2"
                  cls
clus               [,1] [,2]
  NUDT19 MUTATED      0    4
  NUDT19 WILD-TYPE   17   50
   clus
vv  NUDT19 MUTATED NUDT19 WILD-TYPE
  0              0               17
  1              4               50
                  vv
clus               M0 M1 MX
  NUDT19 MUTATED    3  0  1
  NUDT19 WILD-TYPE 36  3 29
D334V6, multiclass
    clus
vv   NUDT19 MUTATED NUDT19 WILD-TYPE
  M0              3               36
  M1              0                3
  MX              1               29
D334V7, binary
                  cls
clus                0  1
  NUDT19 MUTATED    4  0
  NUDT19 WILD-TYPE 32 36
[1] "tbl2"
                  cls
clus               [,1] [,2]
  NUDT19 MUTATED      4    0
  NUDT19 WILD-TYPE   32   36
        clus
vv       NUDT19 MUTATED NUDT19 WILD-TYPE
  FEMALE              4               32
  MALE                0               36
                  vv
clus               PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  NUDT19 MUTATED                                     4
  NUDT19 WILD-TYPE                                  61
                  vv
clus               PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  NUDT19 MUTATED                                       0
  NUDT19 WILD-TYPE                                     4
                  vv
clus               PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  NUDT19 MUTATED                                                  0
  NUDT19 WILD-TYPE                                                2
D334V8, multiclass
                                                  clus
vv                                                 NUDT19 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                           4
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                         0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA              0
                                                  clus
vv                                                 NUDT19 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                            61
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                           4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                2
D334V9, continuous
[1] "Remove cluster labels:" "NUDT19 MUTATED"        
clus
  NUDT19 MUTATED NUDT19 WILD-TYPE 
               1               21 
      TCGA-F2-6880       TCGA-FB-A4P5       TCGA-FB-A4P6       TCGA-FB-A5VM 
"NUDT19 WILD-TYPE" "NUDT19 WILD-TYPE" "NUDT19 WILD-TYPE" "NUDT19 WILD-TYPE" 
      TCGA-FB-A78T       TCGA-FB-A7DR       TCGA-H6-8124       TCGA-H6-A45N 
"NUDT19 WILD-TYPE" "NUDT19 WILD-TYPE" "NUDT19 WILD-TYPE" "NUDT19 WILD-TYPE" 
      TCGA-H8-A6C1       TCGA-IB-7644       TCGA-IB-7649       TCGA-IB-7885 
"NUDT19 WILD-TYPE" "NUDT19 WILD-TYPE" "NUDT19 WILD-TYPE" "NUDT19 WILD-TYPE" 
      TCGA-IB-7886       TCGA-IB-7887       TCGA-IB-7891       TCGA-IB-8126 
"NUDT19 WILD-TYPE" "NUDT19 WILD-TYPE" "NUDT19 WILD-TYPE" "NUDT19 WILD-TYPE" 
      TCGA-IB-8127       TCGA-IB-A5SS       TCGA-IB-A6UG       TCGA-LB-A7SX 
"NUDT19 WILD-TYPE" "NUDT19 WILD-TYPE" "NUDT19 WILD-TYPE" "NUDT19 WILD-TYPE" 
      TCGA-OE-A75W 
"NUDT19 WILD-TYPE" 
D334V10, continuous
[1] "Remove cluster labels:" "NUDT19 MUTATED"        
clus
  NUDT19 MUTATED NUDT19 WILD-TYPE 
               1               18 
      TCGA-FB-A4P5       TCGA-FB-A4P6       TCGA-FB-A5VM       TCGA-FB-A78T 
"NUDT19 WILD-TYPE" "NUDT19 WILD-TYPE" "NUDT19 WILD-TYPE" "NUDT19 WILD-TYPE" 
      TCGA-FB-A7DR       TCGA-H6-8124       TCGA-H8-A6C1       TCGA-IB-7644 
"NUDT19 WILD-TYPE" "NUDT19 WILD-TYPE" "NUDT19 WILD-TYPE" "NUDT19 WILD-TYPE" 
      TCGA-IB-7649       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7891 
"NUDT19 WILD-TYPE" "NUDT19 WILD-TYPE" "NUDT19 WILD-TYPE" "NUDT19 WILD-TYPE" 
      TCGA-IB-8126       TCGA-IB-8127       TCGA-IB-A5SS       TCGA-IB-A6UG 
"NUDT19 WILD-TYPE" "NUDT19 WILD-TYPE" "NUDT19 WILD-TYPE" "NUDT19 WILD-TYPE" 
      TCGA-LB-A7SX       TCGA-OE-A75W 
"NUDT19 WILD-TYPE" "NUDT19 WILD-TYPE" 
                  vv
clus               R0 R1 RX
  NUDT19 MUTATED    2  1  0
  NUDT19 WILD-TYPE 40 23  2
D334V11, multiclass
    clus
vv   NUDT19 MUTATED NUDT19 WILD-TYPE
  R0              2               40
  R1              1               23
  RX              0                2
D334V12, continuous

Clustering(335) Variable = DDX60 MUTATION ANALYSIS
D335V1, survival
                 sevent
clus2              0  1
  DDX60 MUTATED    5  6
  DDX60 WILD-TYPE 35 23
  DDX60 MUTATED DDX60 WILD-TYPE 
             11              58 
  DDX60 MUTATED DDX60 WILD-TYPE 
              6              23 
$`DDX60 MUTATED`
TCGA-F2-A44G TCGA-HZ-7923 TCGA-HZ-8003 TCGA-HZ-8636 TCGA-HZ-8638 TCGA-IB-7644 
        5.03         0.26         0.69         0.16         2.99        11.41 
TCGA-IB-7645 TCGA-IB-7651 TCGA-IB-7888 TCGA-IB-7897 TCGA-IB-8127 
       49.38        19.82        43.79        15.98        17.16 

$`DDX60 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44H TCGA-FB-A4P5 
       10.98         9.70        11.84         7.10        19.27         0.13 
TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR TCGA-FZ-5920 
       11.93        12.66         2.47         0.03         5.46         2.01 
TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7289 
       36.20        20.81        12.89         7.66        13.02         7.89 
TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 
        0.92         0.66         0.13        12.13        11.87         0.26 
TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-A49G 
        0.62         0.79         3.95         0.92         0.53         0.76 
TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 
        0.95         6.38         1.51         4.77        21.90        15.35 
TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7889 TCGA-IB-7890 
       15.65        27.98         4.04         3.62        15.81        19.66 
TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-8126 TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ 
       16.04         3.85         0.56        10.82         9.86         7.20 
TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W TCGA-PZ-A5RE 
       15.12         0.26         1.35         4.18         3.62         8.12 
TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
       13.68        16.80        14.14        18.67 

  DDX60 MUTATED DDX60 WILD-TYPE 
           0.16            0.03 
  DDX60 MUTATED DDX60 WILD-TYPE 
          49.38           36.20 
  DDX60 MUTATED DDX60 WILD-TYPE 
          11.41            7.43 
[1] "0.2 - 49.4 (11.4)" "0.0 - 36.2 (7.4)" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"DDX60 WILD-TYPE" "DDX60 WILD-TYPE" "DDX60 WILD-TYPE" "DDX60 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
  "DDX60 MUTATED" "DDX60 WILD-TYPE" "DDX60 WILD-TYPE" "DDX60 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"DDX60 WILD-TYPE" "DDX60 WILD-TYPE" "DDX60 WILD-TYPE" "DDX60 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"DDX60 WILD-TYPE" "DDX60 WILD-TYPE" "DDX60 WILD-TYPE" "DDX60 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"DDX60 WILD-TYPE" "DDX60 WILD-TYPE" "DDX60 WILD-TYPE" "DDX60 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"DDX60 WILD-TYPE" "DDX60 WILD-TYPE"   "DDX60 MUTATED" "DDX60 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"DDX60 WILD-TYPE" "DDX60 WILD-TYPE" "DDX60 WILD-TYPE" "DDX60 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
  "DDX60 MUTATED" "DDX60 WILD-TYPE" "DDX60 WILD-TYPE" "DDX60 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
  "DDX60 MUTATED"   "DDX60 MUTATED" "DDX60 WILD-TYPE" "DDX60 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"DDX60 WILD-TYPE" "DDX60 WILD-TYPE"   "DDX60 MUTATED"   "DDX60 MUTATED" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"DDX60 WILD-TYPE" "DDX60 WILD-TYPE" "DDX60 WILD-TYPE"   "DDX60 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"DDX60 WILD-TYPE" "DDX60 WILD-TYPE" "DDX60 WILD-TYPE" "DDX60 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
  "DDX60 MUTATED" "DDX60 WILD-TYPE" "DDX60 WILD-TYPE" "DDX60 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"DDX60 WILD-TYPE"   "DDX60 MUTATED" "DDX60 WILD-TYPE"   "DDX60 MUTATED" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"DDX60 WILD-TYPE" "DDX60 WILD-TYPE" "DDX60 WILD-TYPE" "DDX60 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"DDX60 WILD-TYPE" "DDX60 WILD-TYPE" "DDX60 WILD-TYPE" "DDX60 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"DDX60 WILD-TYPE" "DDX60 WILD-TYPE" "DDX60 WILD-TYPE" "DDX60 WILD-TYPE" 
     TCGA-US-A77J 
"DDX60 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"DDX60 WILD-TYPE" "DDX60 WILD-TYPE" "DDX60 WILD-TYPE" "DDX60 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
  "DDX60 MUTATED" "DDX60 WILD-TYPE" "DDX60 WILD-TYPE" "DDX60 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"DDX60 WILD-TYPE" "DDX60 WILD-TYPE" "DDX60 WILD-TYPE" "DDX60 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"DDX60 WILD-TYPE" "DDX60 WILD-TYPE" "DDX60 WILD-TYPE" "DDX60 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"DDX60 WILD-TYPE" "DDX60 WILD-TYPE" "DDX60 WILD-TYPE" "DDX60 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"DDX60 WILD-TYPE" "DDX60 WILD-TYPE"   "DDX60 MUTATED" "DDX60 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"DDX60 WILD-TYPE" "DDX60 WILD-TYPE" "DDX60 WILD-TYPE" "DDX60 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
  "DDX60 MUTATED" "DDX60 WILD-TYPE" "DDX60 WILD-TYPE" "DDX60 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
  "DDX60 MUTATED"   "DDX60 MUTATED" "DDX60 WILD-TYPE" "DDX60 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"DDX60 WILD-TYPE" "DDX60 WILD-TYPE"   "DDX60 MUTATED"   "DDX60 MUTATED" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"DDX60 WILD-TYPE" "DDX60 WILD-TYPE" "DDX60 WILD-TYPE"   "DDX60 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"DDX60 WILD-TYPE" "DDX60 WILD-TYPE" "DDX60 WILD-TYPE" "DDX60 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
  "DDX60 MUTATED" "DDX60 WILD-TYPE" "DDX60 WILD-TYPE" "DDX60 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"DDX60 WILD-TYPE"   "DDX60 MUTATED" "DDX60 WILD-TYPE"   "DDX60 MUTATED" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"DDX60 WILD-TYPE" "DDX60 WILD-TYPE" "DDX60 WILD-TYPE" "DDX60 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"DDX60 WILD-TYPE" "DDX60 WILD-TYPE" "DDX60 WILD-TYPE" "DDX60 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"DDX60 WILD-TYPE" "DDX60 WILD-TYPE" "DDX60 WILD-TYPE" "DDX60 WILD-TYPE" 
     TCGA-US-A77J 
"DDX60 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"DDX60 WILD-TYPE" "DDX60 WILD-TYPE" "DDX60 WILD-TYPE" "DDX60 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
  "DDX60 MUTATED" "DDX60 WILD-TYPE" "DDX60 WILD-TYPE" "DDX60 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"DDX60 WILD-TYPE" "DDX60 WILD-TYPE" "DDX60 WILD-TYPE" "DDX60 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"DDX60 WILD-TYPE" "DDX60 WILD-TYPE" "DDX60 WILD-TYPE" "DDX60 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"DDX60 WILD-TYPE" "DDX60 WILD-TYPE" "DDX60 WILD-TYPE" "DDX60 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"DDX60 WILD-TYPE" "DDX60 WILD-TYPE"   "DDX60 MUTATED" "DDX60 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"DDX60 WILD-TYPE" "DDX60 WILD-TYPE" "DDX60 WILD-TYPE" "DDX60 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
  "DDX60 MUTATED" "DDX60 WILD-TYPE" "DDX60 WILD-TYPE" "DDX60 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
  "DDX60 MUTATED"   "DDX60 MUTATED" "DDX60 WILD-TYPE" "DDX60 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"DDX60 WILD-TYPE" "DDX60 WILD-TYPE"   "DDX60 MUTATED"   "DDX60 MUTATED" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"DDX60 WILD-TYPE" "DDX60 WILD-TYPE" "DDX60 WILD-TYPE"   "DDX60 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"DDX60 WILD-TYPE" "DDX60 WILD-TYPE" "DDX60 WILD-TYPE" "DDX60 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
  "DDX60 MUTATED" "DDX60 WILD-TYPE" "DDX60 WILD-TYPE" "DDX60 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"DDX60 WILD-TYPE"   "DDX60 MUTATED" "DDX60 WILD-TYPE"   "DDX60 MUTATED" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"DDX60 WILD-TYPE" "DDX60 WILD-TYPE" "DDX60 WILD-TYPE" "DDX60 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"DDX60 WILD-TYPE" "DDX60 WILD-TYPE" "DDX60 WILD-TYPE" "DDX60 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"DDX60 WILD-TYPE" "DDX60 WILD-TYPE" "DDX60 WILD-TYPE" "DDX60 WILD-TYPE" 
     TCGA-US-A77J 
"DDX60 WILD-TYPE" 
[1] "hr=" "2.1"
D335V2, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  DDX60 MUTATED          1        0         2         6         0        2
  DDX60 WILD-TYPE        0        4         9        45         2        1
D335V3, multiclass
                 vv
clus              T1+T2 T3+T4
  DDX60 MUTATED       1    10
  DDX60 WILD-TYPE     5    56
D335V4, multiclass
       clus
vv      DDX60 MUTATED DDX60 WILD-TYPE
  T1+T2             1               5
  T3+T4            10              56
D335V5, binary
                 cls
clus               0  1
  DDX60 MUTATED    4  7
  DDX60 WILD-TYPE 13 47
[1] "tbl2"
                 cls
clus              [,1] [,2]
  DDX60 MUTATED      4    7
  DDX60 WILD-TYPE   13   47
   clus
vv  DDX60 MUTATED DDX60 WILD-TYPE
  0             4              13
  1             7              47
                 vv
clus              M0 M1 MX
  DDX60 MUTATED    6  2  3
  DDX60 WILD-TYPE 33  1 27
D335V6, multiclass
    clus
vv   DDX60 MUTATED DDX60 WILD-TYPE
  M0             6              33
  M1             2               1
  MX             3              27
D335V7, binary
                 cls
clus               0  1
  DDX60 MUTATED    9  2
  DDX60 WILD-TYPE 27 34
[1] "tbl2"
                 cls
clus              [,1] [,2]
  DDX60 MUTATED      9    2
  DDX60 WILD-TYPE   27   34
        clus
vv       DDX60 MUTATED DDX60 WILD-TYPE
  FEMALE             9              27
  MALE               2              34
                 vv
clus              PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  DDX60 MUTATED                                    10
  DDX60 WILD-TYPE                                  55
                 vv
clus              PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  DDX60 MUTATED                                       0
  DDX60 WILD-TYPE                                     4
                 vv
clus              PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  DDX60 MUTATED                                                  1
  DDX60 WILD-TYPE                                                1
D335V8, multiclass
                                                  clus
vv                                                 DDX60 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                         10
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                        0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA             1
                                                  clus
vv                                                 DDX60 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                           55
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                          4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA               1
D335V9, continuous
D335V10, continuous
                 vv
clus              R0 R1 RX
  DDX60 MUTATED    7  4  0
  DDX60 WILD-TYPE 35 20  2
D335V11, multiclass
    clus
vv   DDX60 MUTATED DDX60 WILD-TYPE
  R0             7              35
  R1             4              20
  RX             0               2
D335V12, continuous

Clustering(336) Variable = SLCO1B3 MUTATION ANALYSIS
D336V1, survival
                   sevent
clus2                0  1
  SLCO1B3 MUTATED    2  4
  SLCO1B3 WILD-TYPE 38 25
  SLCO1B3 MUTATED SLCO1B3 WILD-TYPE 
                6                63 
  SLCO1B3 MUTATED SLCO1B3 WILD-TYPE 
                4                25 
$`SLCO1B3 MUTATED`
TCGA-F2-7276 TCGA-H6-8124 TCGA-HZ-8636 TCGA-IB-7644 TCGA-IB-7651 TCGA-IB-A5SQ 
        7.10        12.89         0.16        11.41        19.82         7.20 

$`SLCO1B3 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-A44G TCGA-F2-A44H TCGA-FB-A4P5 
       10.98         9.70        11.84         5.03        19.27         0.13 
TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR TCGA-FZ-5920 
       11.93        12.66         2.47         0.03         5.46         2.01 
TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7289 TCGA-HZ-7918 
       36.20        20.81         7.66        13.02         7.89         0.92 
TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 
        0.66         0.13         0.26        12.13        11.87         0.26 
TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 
        0.62         0.79         0.69         3.95         0.92         0.53 
TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7645 
        2.99         0.76         0.95         6.38         1.51        49.38 
TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7886 
        4.77        21.90        15.35        15.65        27.98         4.04 
TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-7893 
        3.62        43.79        15.81        19.66        16.04         3.85 
TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SS 
       15.98         0.56        17.16        10.82         9.86        15.12 
TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W TCGA-PZ-A5RE TCGA-Q3-A5QY 
        0.26         1.35         4.18         3.62         8.12        13.68 
TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
       16.80        14.14        18.67 

  SLCO1B3 MUTATED SLCO1B3 WILD-TYPE 
             0.16              0.03 
  SLCO1B3 MUTATED SLCO1B3 WILD-TYPE 
            19.82             49.38 
  SLCO1B3 MUTATED SLCO1B3 WILD-TYPE 
            9.305             7.660 
[1] "0.2 - 19.8 (9.3)" "0.0 - 49.4 (7.7)"
       TCGA-F2-6879        TCGA-F2-6880        TCGA-F2-7273        TCGA-F2-7276 
"SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE"   "SLCO1B3 MUTATED" 
       TCGA-F2-A44G        TCGA-F2-A44H        TCGA-FB-A4P5        TCGA-FB-A4P6 
"SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" 
       TCGA-FB-A545        TCGA-FB-A5VM        TCGA-FB-A78T        TCGA-FB-A7DR 
"SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" 
       TCGA-FZ-5920        TCGA-FZ-5922        TCGA-FZ-5923        TCGA-H6-8124 
"SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE"   "SLCO1B3 MUTATED" 
       TCGA-H6-A45N        TCGA-H8-A6C1        TCGA-HZ-7289        TCGA-HZ-7918 
"SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" 
       TCGA-HZ-7919        TCGA-HZ-7922        TCGA-HZ-7923        TCGA-HZ-7924 
"SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" 
       TCGA-HZ-7925        TCGA-HZ-7926        TCGA-HZ-8001        TCGA-HZ-8002 
"SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" 
       TCGA-HZ-8003        TCGA-HZ-8005        TCGA-HZ-8315        TCGA-HZ-8317 
"SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" 
       TCGA-HZ-8636        TCGA-HZ-8638        TCGA-HZ-A49G        TCGA-HZ-A49H 
  "SLCO1B3 MUTATED" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" 
       TCGA-HZ-A4BH        TCGA-HZ-A4BK        TCGA-IB-7644        TCGA-IB-7645 
"SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE"   "SLCO1B3 MUTATED" "SLCO1B3 WILD-TYPE" 
       TCGA-IB-7646        TCGA-IB-7647        TCGA-IB-7649        TCGA-IB-7651 
"SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE"   "SLCO1B3 MUTATED" 
       TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-7886        TCGA-IB-7887 
"SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" 
       TCGA-IB-7888        TCGA-IB-7889        TCGA-IB-7890        TCGA-IB-7891 
"SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" 
       TCGA-IB-7893        TCGA-IB-7897        TCGA-IB-8126        TCGA-IB-8127 
"SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" 
       TCGA-IB-A5SO        TCGA-IB-A5SP        TCGA-IB-A5SQ        TCGA-IB-A5SS 
"SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE"   "SLCO1B3 MUTATED" "SLCO1B3 WILD-TYPE" 
       TCGA-IB-A5ST        TCGA-IB-A6UG        TCGA-LB-A7SX        TCGA-OE-A75W 
"SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" 
       TCGA-PZ-A5RE        TCGA-Q3-A5QY        TCGA-US-A779        TCGA-US-A77E 
"SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" 
       TCGA-US-A77J 
"SLCO1B3 WILD-TYPE" 
       TCGA-F2-6879        TCGA-F2-6880        TCGA-F2-7273        TCGA-F2-7276 
"SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE"   "SLCO1B3 MUTATED" 
       TCGA-F2-A44G        TCGA-F2-A44H        TCGA-FB-A4P5        TCGA-FB-A4P6 
"SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" 
       TCGA-FB-A545        TCGA-FB-A5VM        TCGA-FB-A78T        TCGA-FB-A7DR 
"SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" 
       TCGA-FZ-5920        TCGA-FZ-5922        TCGA-FZ-5923        TCGA-H6-8124 
"SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE"   "SLCO1B3 MUTATED" 
       TCGA-H6-A45N        TCGA-H8-A6C1        TCGA-HZ-7289        TCGA-HZ-7918 
"SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" 
       TCGA-HZ-7919        TCGA-HZ-7922        TCGA-HZ-7923        TCGA-HZ-7924 
"SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" 
       TCGA-HZ-7925        TCGA-HZ-7926        TCGA-HZ-8001        TCGA-HZ-8002 
"SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" 
       TCGA-HZ-8003        TCGA-HZ-8005        TCGA-HZ-8315        TCGA-HZ-8317 
"SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" 
       TCGA-HZ-8636        TCGA-HZ-8638        TCGA-HZ-A49G        TCGA-HZ-A49H 
  "SLCO1B3 MUTATED" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" 
       TCGA-HZ-A4BH        TCGA-HZ-A4BK        TCGA-IB-7644        TCGA-IB-7645 
"SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE"   "SLCO1B3 MUTATED" "SLCO1B3 WILD-TYPE" 
       TCGA-IB-7646        TCGA-IB-7647        TCGA-IB-7649        TCGA-IB-7651 
"SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE"   "SLCO1B3 MUTATED" 
       TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-7886        TCGA-IB-7887 
"SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" 
       TCGA-IB-7888        TCGA-IB-7889        TCGA-IB-7890        TCGA-IB-7891 
"SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" 
       TCGA-IB-7893        TCGA-IB-7897        TCGA-IB-8126        TCGA-IB-8127 
"SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" 
       TCGA-IB-A5SO        TCGA-IB-A5SP        TCGA-IB-A5SQ        TCGA-IB-A5SS 
"SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE"   "SLCO1B3 MUTATED" "SLCO1B3 WILD-TYPE" 
       TCGA-IB-A5ST        TCGA-IB-A6UG        TCGA-LB-A7SX        TCGA-OE-A75W 
"SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" 
       TCGA-PZ-A5RE        TCGA-Q3-A5QY        TCGA-US-A779        TCGA-US-A77E 
"SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" 
       TCGA-US-A77J 
"SLCO1B3 WILD-TYPE" 
       TCGA-F2-6879        TCGA-F2-6880        TCGA-F2-7273        TCGA-F2-7276 
"SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE"   "SLCO1B3 MUTATED" 
       TCGA-F2-A44G        TCGA-F2-A44H        TCGA-FB-A4P5        TCGA-FB-A4P6 
"SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" 
       TCGA-FB-A545        TCGA-FB-A5VM        TCGA-FB-A78T        TCGA-FB-A7DR 
"SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" 
       TCGA-FZ-5920        TCGA-FZ-5922        TCGA-FZ-5923        TCGA-H6-8124 
"SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE"   "SLCO1B3 MUTATED" 
       TCGA-H6-A45N        TCGA-H8-A6C1        TCGA-HZ-7289        TCGA-HZ-7918 
"SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" 
       TCGA-HZ-7919        TCGA-HZ-7922        TCGA-HZ-7923        TCGA-HZ-7924 
"SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" 
       TCGA-HZ-7925        TCGA-HZ-7926        TCGA-HZ-8001        TCGA-HZ-8002 
"SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" 
       TCGA-HZ-8003        TCGA-HZ-8005        TCGA-HZ-8315        TCGA-HZ-8317 
"SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" 
       TCGA-HZ-8636        TCGA-HZ-8638        TCGA-HZ-A49G        TCGA-HZ-A49H 
  "SLCO1B3 MUTATED" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" 
       TCGA-HZ-A4BH        TCGA-HZ-A4BK        TCGA-IB-7644        TCGA-IB-7645 
"SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE"   "SLCO1B3 MUTATED" "SLCO1B3 WILD-TYPE" 
       TCGA-IB-7646        TCGA-IB-7647        TCGA-IB-7649        TCGA-IB-7651 
"SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE"   "SLCO1B3 MUTATED" 
       TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-7886        TCGA-IB-7887 
"SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" 
       TCGA-IB-7888        TCGA-IB-7889        TCGA-IB-7890        TCGA-IB-7891 
"SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" 
       TCGA-IB-7893        TCGA-IB-7897        TCGA-IB-8126        TCGA-IB-8127 
"SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" 
       TCGA-IB-A5SO        TCGA-IB-A5SP        TCGA-IB-A5SQ        TCGA-IB-A5SS 
"SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE"   "SLCO1B3 MUTATED" "SLCO1B3 WILD-TYPE" 
       TCGA-IB-A5ST        TCGA-IB-A6UG        TCGA-LB-A7SX        TCGA-OE-A75W 
"SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" 
       TCGA-PZ-A5RE        TCGA-Q3-A5QY        TCGA-US-A779        TCGA-US-A77E 
"SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" 
       TCGA-US-A77J 
"SLCO1B3 WILD-TYPE" 
[1] "hr=" "1.9"
D336V2, continuous
                   vv
clus                STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  SLCO1B3 MUTATED          0        1         0         3         0        2
  SLCO1B3 WILD-TYPE        1        3        11        48         2        1
D336V3, multiclass
                   vv
clus                T1+T2 T3+T4
  SLCO1B3 MUTATED       1     5
  SLCO1B3 WILD-TYPE     5    61
D336V4, multiclass
       clus
vv      SLCO1B3 MUTATED SLCO1B3 WILD-TYPE
  T1+T2               1                 5
  T3+T4               5                61
D336V5, binary
                   cls
clus                 0  1
  SLCO1B3 MUTATED    2  4
  SLCO1B3 WILD-TYPE 15 50
[1] "tbl2"
                   cls
clus                [,1] [,2]
  SLCO1B3 MUTATED      2    4
  SLCO1B3 WILD-TYPE   15   50
   clus
vv  SLCO1B3 MUTATED SLCO1B3 WILD-TYPE
  0               2                15
  1               4                50
                   vv
clus                M0 M1 MX
  SLCO1B3 MUTATED    4  2  0
  SLCO1B3 WILD-TYPE 35  1 30
D336V6, multiclass
    clus
vv   SLCO1B3 MUTATED SLCO1B3 WILD-TYPE
  M0               4                35
  M1               2                 1
  MX               0                30
D336V7, binary
                   cls
clus                 0  1
  SLCO1B3 MUTATED    5  1
  SLCO1B3 WILD-TYPE 31 35
[1] "tbl2"
                   cls
clus                [,1] [,2]
  SLCO1B3 MUTATED      5    1
  SLCO1B3 WILD-TYPE   31   35
        clus
vv       SLCO1B3 MUTATED SLCO1B3 WILD-TYPE
  FEMALE               5                31
  MALE                 1                35
                   vv
clus                PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  SLCO1B3 MUTATED                                     6
  SLCO1B3 WILD-TYPE                                  59
                   vv
clus                PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  SLCO1B3 MUTATED                                       0
  SLCO1B3 WILD-TYPE                                     4
                   vv
clus                PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  SLCO1B3 MUTATED                                                  0
  SLCO1B3 WILD-TYPE                                                2
D336V8, multiclass
                                                  clus
vv                                                 SLCO1B3 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                            6
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                          0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA               0
                                                  clus
vv                                                 SLCO1B3 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                             59
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                            4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                 2
D336V9, continuous
D336V10, continuous
                   vv
clus                R0 R1 RX
  SLCO1B3 MUTATED    4  2  0
  SLCO1B3 WILD-TYPE 38 22  2
D336V11, multiclass
    clus
vv   SLCO1B3 MUTATED SLCO1B3 WILD-TYPE
  R0               4                38
  R1               2                22
  RX               0                 2
D336V12, continuous

Clustering(337) Variable = INTS6 MUTATION ANALYSIS
D337V1, survival
                 sevent
clus2              0  1
  INTS6 MUTATED    1  2
  INTS6 WILD-TYPE 39 27
  INTS6 MUTATED INTS6 WILD-TYPE 
              3              66 
  INTS6 MUTATED INTS6 WILD-TYPE 
              2              27 
$`INTS6 MUTATED`
TCGA-F2-A44H TCGA-IB-7645 TCGA-IB-7893 
       19.27        49.38         3.85 

$`INTS6 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-FB-A4P5 
       10.98         9.70        11.84         7.10         5.03         0.13 
TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR TCGA-FZ-5920 
       11.93        12.66         2.47         0.03         5.46         2.01 
TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7289 
       36.20        20.81        12.89         7.66        13.02         7.89 
TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 
        0.92         0.66         0.13         0.26        12.13        11.87 
TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 
        0.26         0.62         0.79         0.69         3.95         0.92 
TCGA-HZ-8317 TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH 
        0.53         0.16         2.99         0.76         0.95         6.38 
TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7651 
        1.51        11.41         4.77        21.90        15.35        19.82 
TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 
       15.65        27.98         4.04         3.62        43.79        15.81 
TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO 
       19.66        16.04        15.98         0.56        17.16        10.82 
TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX 
        9.86         7.20        15.12         0.26         1.35         4.18 
TCGA-OE-A75W TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
        3.62         8.12        13.68        16.80        14.14        18.67 

  INTS6 MUTATED INTS6 WILD-TYPE 
           3.85            0.03 
  INTS6 MUTATED INTS6 WILD-TYPE 
          49.38           43.79 
  INTS6 MUTATED INTS6 WILD-TYPE 
          19.27            7.43 
[1] "3.9 - 49.4 (19.3)" "0.0 - 43.8 (7.4)" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"INTS6 WILD-TYPE" "INTS6 WILD-TYPE" "INTS6 WILD-TYPE" "INTS6 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"INTS6 WILD-TYPE"   "INTS6 MUTATED" "INTS6 WILD-TYPE" "INTS6 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"INTS6 WILD-TYPE" "INTS6 WILD-TYPE" "INTS6 WILD-TYPE" "INTS6 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"INTS6 WILD-TYPE" "INTS6 WILD-TYPE" "INTS6 WILD-TYPE" "INTS6 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"INTS6 WILD-TYPE" "INTS6 WILD-TYPE" "INTS6 WILD-TYPE" "INTS6 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"INTS6 WILD-TYPE" "INTS6 WILD-TYPE" "INTS6 WILD-TYPE" "INTS6 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"INTS6 WILD-TYPE" "INTS6 WILD-TYPE" "INTS6 WILD-TYPE" "INTS6 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"INTS6 WILD-TYPE" "INTS6 WILD-TYPE" "INTS6 WILD-TYPE" "INTS6 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"INTS6 WILD-TYPE" "INTS6 WILD-TYPE" "INTS6 WILD-TYPE" "INTS6 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"INTS6 WILD-TYPE" "INTS6 WILD-TYPE" "INTS6 WILD-TYPE"   "INTS6 MUTATED" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"INTS6 WILD-TYPE" "INTS6 WILD-TYPE" "INTS6 WILD-TYPE" "INTS6 WILD-TYPE" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"INTS6 WILD-TYPE" "INTS6 WILD-TYPE" "INTS6 WILD-TYPE" "INTS6 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"INTS6 WILD-TYPE" "INTS6 WILD-TYPE" "INTS6 WILD-TYPE" "INTS6 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
  "INTS6 MUTATED" "INTS6 WILD-TYPE" "INTS6 WILD-TYPE" "INTS6 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"INTS6 WILD-TYPE" "INTS6 WILD-TYPE" "INTS6 WILD-TYPE" "INTS6 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"INTS6 WILD-TYPE" "INTS6 WILD-TYPE" "INTS6 WILD-TYPE" "INTS6 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"INTS6 WILD-TYPE" "INTS6 WILD-TYPE" "INTS6 WILD-TYPE" "INTS6 WILD-TYPE" 
     TCGA-US-A77J 
"INTS6 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"INTS6 WILD-TYPE" "INTS6 WILD-TYPE" "INTS6 WILD-TYPE" "INTS6 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"INTS6 WILD-TYPE"   "INTS6 MUTATED" "INTS6 WILD-TYPE" "INTS6 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"INTS6 WILD-TYPE" "INTS6 WILD-TYPE" "INTS6 WILD-TYPE" "INTS6 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"INTS6 WILD-TYPE" "INTS6 WILD-TYPE" "INTS6 WILD-TYPE" "INTS6 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"INTS6 WILD-TYPE" "INTS6 WILD-TYPE" "INTS6 WILD-TYPE" "INTS6 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"INTS6 WILD-TYPE" "INTS6 WILD-TYPE" "INTS6 WILD-TYPE" "INTS6 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"INTS6 WILD-TYPE" "INTS6 WILD-TYPE" "INTS6 WILD-TYPE" "INTS6 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"INTS6 WILD-TYPE" "INTS6 WILD-TYPE" "INTS6 WILD-TYPE" "INTS6 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"INTS6 WILD-TYPE" "INTS6 WILD-TYPE" "INTS6 WILD-TYPE" "INTS6 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"INTS6 WILD-TYPE" "INTS6 WILD-TYPE" "INTS6 WILD-TYPE"   "INTS6 MUTATED" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"INTS6 WILD-TYPE" "INTS6 WILD-TYPE" "INTS6 WILD-TYPE" "INTS6 WILD-TYPE" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"INTS6 WILD-TYPE" "INTS6 WILD-TYPE" "INTS6 WILD-TYPE" "INTS6 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"INTS6 WILD-TYPE" "INTS6 WILD-TYPE" "INTS6 WILD-TYPE" "INTS6 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
  "INTS6 MUTATED" "INTS6 WILD-TYPE" "INTS6 WILD-TYPE" "INTS6 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"INTS6 WILD-TYPE" "INTS6 WILD-TYPE" "INTS6 WILD-TYPE" "INTS6 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"INTS6 WILD-TYPE" "INTS6 WILD-TYPE" "INTS6 WILD-TYPE" "INTS6 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"INTS6 WILD-TYPE" "INTS6 WILD-TYPE" "INTS6 WILD-TYPE" "INTS6 WILD-TYPE" 
     TCGA-US-A77J 
"INTS6 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"INTS6 WILD-TYPE" "INTS6 WILD-TYPE" "INTS6 WILD-TYPE" "INTS6 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"INTS6 WILD-TYPE"   "INTS6 MUTATED" "INTS6 WILD-TYPE" "INTS6 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"INTS6 WILD-TYPE" "INTS6 WILD-TYPE" "INTS6 WILD-TYPE" "INTS6 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"INTS6 WILD-TYPE" "INTS6 WILD-TYPE" "INTS6 WILD-TYPE" "INTS6 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"INTS6 WILD-TYPE" "INTS6 WILD-TYPE" "INTS6 WILD-TYPE" "INTS6 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"INTS6 WILD-TYPE" "INTS6 WILD-TYPE" "INTS6 WILD-TYPE" "INTS6 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"INTS6 WILD-TYPE" "INTS6 WILD-TYPE" "INTS6 WILD-TYPE" "INTS6 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"INTS6 WILD-TYPE" "INTS6 WILD-TYPE" "INTS6 WILD-TYPE" "INTS6 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"INTS6 WILD-TYPE" "INTS6 WILD-TYPE" "INTS6 WILD-TYPE" "INTS6 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"INTS6 WILD-TYPE" "INTS6 WILD-TYPE" "INTS6 WILD-TYPE"   "INTS6 MUTATED" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"INTS6 WILD-TYPE" "INTS6 WILD-TYPE" "INTS6 WILD-TYPE" "INTS6 WILD-TYPE" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"INTS6 WILD-TYPE" "INTS6 WILD-TYPE" "INTS6 WILD-TYPE" "INTS6 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"INTS6 WILD-TYPE" "INTS6 WILD-TYPE" "INTS6 WILD-TYPE" "INTS6 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
  "INTS6 MUTATED" "INTS6 WILD-TYPE" "INTS6 WILD-TYPE" "INTS6 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"INTS6 WILD-TYPE" "INTS6 WILD-TYPE" "INTS6 WILD-TYPE" "INTS6 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"INTS6 WILD-TYPE" "INTS6 WILD-TYPE" "INTS6 WILD-TYPE" "INTS6 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"INTS6 WILD-TYPE" "INTS6 WILD-TYPE" "INTS6 WILD-TYPE" "INTS6 WILD-TYPE" 
     TCGA-US-A77J 
"INTS6 WILD-TYPE" 
[1] "hr=" "4"  
D337V2, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  INTS6 MUTATED          0        0         2         1         0        0
  INTS6 WILD-TYPE        1        4         9        50         2        3
D337V3, multiclass
                 vv
clus              T1+T2 T3+T4
  INTS6 MUTATED       0     3
  INTS6 WILD-TYPE     6    63
D337V4, multiclass
       clus
vv      INTS6 MUTATED INTS6 WILD-TYPE
  T1+T2             0               6
  T3+T4             3              63
D337V5, binary
                 cls
clus               0  1
  INTS6 MUTATED    2  1
  INTS6 WILD-TYPE 15 53
[1] "tbl2"
                 cls
clus              [,1] [,2]
  INTS6 MUTATED      2    1
  INTS6 WILD-TYPE   15   53
   clus
vv  INTS6 MUTATED INTS6 WILD-TYPE
  0             2              15
  1             1              53
                 vv
clus              M0 M1 MX
  INTS6 MUTATED    3  0  0
  INTS6 WILD-TYPE 36  3 30
D337V6, multiclass
    clus
vv   INTS6 MUTATED INTS6 WILD-TYPE
  M0             3              36
  M1             0               3
  MX             0              30
D337V7, binary
                 cls
clus               0  1
  INTS6 MUTATED    1  2
  INTS6 WILD-TYPE 35 34
[1] "tbl2"
                 cls
clus              [,1] [,2]
  INTS6 MUTATED      1    2
  INTS6 WILD-TYPE   35   34
        clus
vv       INTS6 MUTATED INTS6 WILD-TYPE
  FEMALE             1              35
  MALE               2              34
                 vv
clus              PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  INTS6 MUTATED                                     3
  INTS6 WILD-TYPE                                  62
                 vv
clus              PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  INTS6 MUTATED                                       0
  INTS6 WILD-TYPE                                     4
                 vv
clus              PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  INTS6 MUTATED                                                  0
  INTS6 WILD-TYPE                                                2
D337V8, multiclass
                                                  clus
vv                                                 INTS6 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                          3
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                        0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA             0
                                                  clus
vv                                                 INTS6 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                           62
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                          4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA               2
D337V9, continuous
D337V10, continuous
                 vv
clus              R0 R1 RX
  INTS6 MUTATED    3  0  0
  INTS6 WILD-TYPE 39 24  2
D337V11, multiclass
    clus
vv   INTS6 MUTATED INTS6 WILD-TYPE
  R0             3              39
  R1             0              24
  RX             0               2
D337V12, continuous

Clustering(338) Variable = AP2A2 MUTATION ANALYSIS
D338V1, survival
                 sevent
clus2              0  1
  AP2A2 MUTATED    3  1
  AP2A2 WILD-TYPE 37 28
  AP2A2 MUTATED AP2A2 WILD-TYPE 
              4              65 
  AP2A2 MUTATED AP2A2 WILD-TYPE 
              1              28 
$`AP2A2 MUTATED`
TCGA-HZ-7922 TCGA-HZ-8003 TCGA-HZ-A49G TCGA-IB-7651 
        0.13         0.69         0.76        19.82 

$`AP2A2 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P5 TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR 
        0.13        11.93        12.66         2.47         0.03         5.46 
TCGA-FZ-5920 TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 
        2.01        36.20        20.81        12.89         7.66        13.02 
TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 
        7.89         0.92         0.66         0.26        12.13        11.87 
TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 
        0.26         0.62         0.79         3.95         0.92         0.53 
TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 
        0.16         2.99         0.95         6.38         1.51        11.41 
TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7652 TCGA-IB-7885 
       49.38         4.77        21.90        15.35        15.65        27.98 
TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 
        4.04         3.62        43.79        15.81        19.66        16.04 
TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP 
        3.85        15.98         0.56        17.16        10.82         9.86 
TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W 
        7.20        15.12         0.26         1.35         4.18         3.62 
TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
        8.12        13.68        16.80        14.14        18.67 

  AP2A2 MUTATED AP2A2 WILD-TYPE 
           0.13            0.03 
  AP2A2 MUTATED AP2A2 WILD-TYPE 
          19.82           49.38 
  AP2A2 MUTATED AP2A2 WILD-TYPE 
          0.725           7.890 
[1] "0.1 - 19.8 (0.7)" "0.0 - 49.4 (7.9)"
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"AP2A2 WILD-TYPE" "AP2A2 WILD-TYPE" "AP2A2 WILD-TYPE" "AP2A2 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"AP2A2 WILD-TYPE" "AP2A2 WILD-TYPE" "AP2A2 WILD-TYPE" "AP2A2 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"AP2A2 WILD-TYPE" "AP2A2 WILD-TYPE" "AP2A2 WILD-TYPE" "AP2A2 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"AP2A2 WILD-TYPE" "AP2A2 WILD-TYPE" "AP2A2 WILD-TYPE" "AP2A2 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"AP2A2 WILD-TYPE" "AP2A2 WILD-TYPE" "AP2A2 WILD-TYPE" "AP2A2 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"AP2A2 WILD-TYPE"   "AP2A2 MUTATED" "AP2A2 WILD-TYPE" "AP2A2 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"AP2A2 WILD-TYPE" "AP2A2 WILD-TYPE" "AP2A2 WILD-TYPE" "AP2A2 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
  "AP2A2 MUTATED" "AP2A2 WILD-TYPE" "AP2A2 WILD-TYPE" "AP2A2 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"AP2A2 WILD-TYPE" "AP2A2 WILD-TYPE"   "AP2A2 MUTATED" "AP2A2 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"AP2A2 WILD-TYPE" "AP2A2 WILD-TYPE" "AP2A2 WILD-TYPE" "AP2A2 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"AP2A2 WILD-TYPE" "AP2A2 WILD-TYPE" "AP2A2 WILD-TYPE"   "AP2A2 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"AP2A2 WILD-TYPE" "AP2A2 WILD-TYPE" "AP2A2 WILD-TYPE" "AP2A2 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"AP2A2 WILD-TYPE" "AP2A2 WILD-TYPE" "AP2A2 WILD-TYPE" "AP2A2 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"AP2A2 WILD-TYPE" "AP2A2 WILD-TYPE" "AP2A2 WILD-TYPE" "AP2A2 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"AP2A2 WILD-TYPE" "AP2A2 WILD-TYPE" "AP2A2 WILD-TYPE" "AP2A2 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"AP2A2 WILD-TYPE" "AP2A2 WILD-TYPE" "AP2A2 WILD-TYPE" "AP2A2 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"AP2A2 WILD-TYPE" "AP2A2 WILD-TYPE" "AP2A2 WILD-TYPE" "AP2A2 WILD-TYPE" 
     TCGA-US-A77J 
"AP2A2 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"AP2A2 WILD-TYPE" "AP2A2 WILD-TYPE" "AP2A2 WILD-TYPE" "AP2A2 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"AP2A2 WILD-TYPE" "AP2A2 WILD-TYPE" "AP2A2 WILD-TYPE" "AP2A2 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"AP2A2 WILD-TYPE" "AP2A2 WILD-TYPE" "AP2A2 WILD-TYPE" "AP2A2 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"AP2A2 WILD-TYPE" "AP2A2 WILD-TYPE" "AP2A2 WILD-TYPE" "AP2A2 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"AP2A2 WILD-TYPE" "AP2A2 WILD-TYPE" "AP2A2 WILD-TYPE" "AP2A2 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"AP2A2 WILD-TYPE"   "AP2A2 MUTATED" "AP2A2 WILD-TYPE" "AP2A2 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"AP2A2 WILD-TYPE" "AP2A2 WILD-TYPE" "AP2A2 WILD-TYPE" "AP2A2 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
  "AP2A2 MUTATED" "AP2A2 WILD-TYPE" "AP2A2 WILD-TYPE" "AP2A2 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"AP2A2 WILD-TYPE" "AP2A2 WILD-TYPE"   "AP2A2 MUTATED" "AP2A2 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"AP2A2 WILD-TYPE" "AP2A2 WILD-TYPE" "AP2A2 WILD-TYPE" "AP2A2 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"AP2A2 WILD-TYPE" "AP2A2 WILD-TYPE" "AP2A2 WILD-TYPE"   "AP2A2 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"AP2A2 WILD-TYPE" "AP2A2 WILD-TYPE" "AP2A2 WILD-TYPE" "AP2A2 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"AP2A2 WILD-TYPE" "AP2A2 WILD-TYPE" "AP2A2 WILD-TYPE" "AP2A2 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"AP2A2 WILD-TYPE" "AP2A2 WILD-TYPE" "AP2A2 WILD-TYPE" "AP2A2 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"AP2A2 WILD-TYPE" "AP2A2 WILD-TYPE" "AP2A2 WILD-TYPE" "AP2A2 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"AP2A2 WILD-TYPE" "AP2A2 WILD-TYPE" "AP2A2 WILD-TYPE" "AP2A2 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"AP2A2 WILD-TYPE" "AP2A2 WILD-TYPE" "AP2A2 WILD-TYPE" "AP2A2 WILD-TYPE" 
     TCGA-US-A77J 
"AP2A2 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"AP2A2 WILD-TYPE" "AP2A2 WILD-TYPE" "AP2A2 WILD-TYPE" "AP2A2 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"AP2A2 WILD-TYPE" "AP2A2 WILD-TYPE" "AP2A2 WILD-TYPE" "AP2A2 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"AP2A2 WILD-TYPE" "AP2A2 WILD-TYPE" "AP2A2 WILD-TYPE" "AP2A2 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"AP2A2 WILD-TYPE" "AP2A2 WILD-TYPE" "AP2A2 WILD-TYPE" "AP2A2 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"AP2A2 WILD-TYPE" "AP2A2 WILD-TYPE" "AP2A2 WILD-TYPE" "AP2A2 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"AP2A2 WILD-TYPE"   "AP2A2 MUTATED" "AP2A2 WILD-TYPE" "AP2A2 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"AP2A2 WILD-TYPE" "AP2A2 WILD-TYPE" "AP2A2 WILD-TYPE" "AP2A2 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
  "AP2A2 MUTATED" "AP2A2 WILD-TYPE" "AP2A2 WILD-TYPE" "AP2A2 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"AP2A2 WILD-TYPE" "AP2A2 WILD-TYPE"   "AP2A2 MUTATED" "AP2A2 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"AP2A2 WILD-TYPE" "AP2A2 WILD-TYPE" "AP2A2 WILD-TYPE" "AP2A2 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"AP2A2 WILD-TYPE" "AP2A2 WILD-TYPE" "AP2A2 WILD-TYPE"   "AP2A2 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"AP2A2 WILD-TYPE" "AP2A2 WILD-TYPE" "AP2A2 WILD-TYPE" "AP2A2 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"AP2A2 WILD-TYPE" "AP2A2 WILD-TYPE" "AP2A2 WILD-TYPE" "AP2A2 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"AP2A2 WILD-TYPE" "AP2A2 WILD-TYPE" "AP2A2 WILD-TYPE" "AP2A2 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"AP2A2 WILD-TYPE" "AP2A2 WILD-TYPE" "AP2A2 WILD-TYPE" "AP2A2 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"AP2A2 WILD-TYPE" "AP2A2 WILD-TYPE" "AP2A2 WILD-TYPE" "AP2A2 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"AP2A2 WILD-TYPE" "AP2A2 WILD-TYPE" "AP2A2 WILD-TYPE" "AP2A2 WILD-TYPE" 
     TCGA-US-A77J 
"AP2A2 WILD-TYPE" 
[1] "hr=" "1.2"
D338V2, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  AP2A2 MUTATED          0        1         0         4         0        0
  AP2A2 WILD-TYPE        1        3        11        47         2        3
D338V3, multiclass
                 vv
clus              T1+T2 T3+T4
  AP2A2 MUTATED       2     3
  AP2A2 WILD-TYPE     4    63
D338V4, multiclass
       clus
vv      AP2A2 MUTATED AP2A2 WILD-TYPE
  T1+T2             2               4
  T3+T4             3              63
D338V5, binary
                 cls
clus               0  1
  AP2A2 MUTATED    1  4
  AP2A2 WILD-TYPE 16 50
[1] "tbl2"
                 cls
clus              [,1] [,2]
  AP2A2 MUTATED      1    4
  AP2A2 WILD-TYPE   16   50
   clus
vv  AP2A2 MUTATED AP2A2 WILD-TYPE
  0             1              16
  1             4              50
                 vv
clus              M0 M1 MX
  AP2A2 MUTATED    1  0  4
  AP2A2 WILD-TYPE 38  3 26
D338V6, multiclass
    clus
vv   AP2A2 MUTATED AP2A2 WILD-TYPE
  M0             1              38
  M1             0               3
  MX             4              26
D338V7, binary
                 cls
clus               0  1
  AP2A2 MUTATED    4  1
  AP2A2 WILD-TYPE 32 35
[1] "tbl2"
                 cls
clus              [,1] [,2]
  AP2A2 MUTATED      4    1
  AP2A2 WILD-TYPE   32   35
        clus
vv       AP2A2 MUTATED AP2A2 WILD-TYPE
  FEMALE             4              32
  MALE               1              35
                 vv
clus              PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  AP2A2 MUTATED                                     5
  AP2A2 WILD-TYPE                                  60
                 vv
clus              PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  AP2A2 MUTATED                                       0
  AP2A2 WILD-TYPE                                     4
                 vv
clus              PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  AP2A2 MUTATED                                                  0
  AP2A2 WILD-TYPE                                                2
D338V8, multiclass
                                                  clus
vv                                                 AP2A2 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                          5
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                        0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA             0
                                                  clus
vv                                                 AP2A2 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                           60
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                          4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA               2
D338V9, continuous
[1] "Remove cluster labels:" "AP2A2 MUTATED"         
clus
  AP2A2 MUTATED AP2A2 WILD-TYPE 
              1              21 
     TCGA-F2-6880      TCGA-FB-A4P5      TCGA-FB-A4P6      TCGA-FB-A5VM 
"AP2A2 WILD-TYPE" "AP2A2 WILD-TYPE" "AP2A2 WILD-TYPE" "AP2A2 WILD-TYPE" 
     TCGA-FB-A78T      TCGA-FB-A7DR      TCGA-H6-8124      TCGA-H6-A45N 
"AP2A2 WILD-TYPE" "AP2A2 WILD-TYPE" "AP2A2 WILD-TYPE" "AP2A2 WILD-TYPE" 
     TCGA-H8-A6C1      TCGA-IB-7644      TCGA-IB-7649      TCGA-IB-7885 
"AP2A2 WILD-TYPE" "AP2A2 WILD-TYPE" "AP2A2 WILD-TYPE" "AP2A2 WILD-TYPE" 
     TCGA-IB-7886      TCGA-IB-7887      TCGA-IB-7891      TCGA-IB-8126 
"AP2A2 WILD-TYPE" "AP2A2 WILD-TYPE" "AP2A2 WILD-TYPE" "AP2A2 WILD-TYPE" 
     TCGA-IB-8127      TCGA-IB-A5SS      TCGA-IB-A6UG      TCGA-LB-A7SX 
"AP2A2 WILD-TYPE" "AP2A2 WILD-TYPE" "AP2A2 WILD-TYPE" "AP2A2 WILD-TYPE" 
     TCGA-OE-A75W 
"AP2A2 WILD-TYPE" 
D338V10, continuous
[1] "Remove cluster labels:" "AP2A2 MUTATED"         
clus
  AP2A2 MUTATED AP2A2 WILD-TYPE 
              1              18 
     TCGA-FB-A4P5      TCGA-FB-A4P6      TCGA-FB-A5VM      TCGA-FB-A78T 
"AP2A2 WILD-TYPE" "AP2A2 WILD-TYPE" "AP2A2 WILD-TYPE" "AP2A2 WILD-TYPE" 
     TCGA-FB-A7DR      TCGA-H6-8124      TCGA-H8-A6C1      TCGA-IB-7644 
"AP2A2 WILD-TYPE" "AP2A2 WILD-TYPE" "AP2A2 WILD-TYPE" "AP2A2 WILD-TYPE" 
     TCGA-IB-7649      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7891 
"AP2A2 WILD-TYPE" "AP2A2 WILD-TYPE" "AP2A2 WILD-TYPE" "AP2A2 WILD-TYPE" 
     TCGA-IB-8126      TCGA-IB-8127      TCGA-IB-A5SS      TCGA-IB-A6UG 
"AP2A2 WILD-TYPE" "AP2A2 WILD-TYPE" "AP2A2 WILD-TYPE" "AP2A2 WILD-TYPE" 
     TCGA-LB-A7SX      TCGA-OE-A75W 
"AP2A2 WILD-TYPE" "AP2A2 WILD-TYPE" 
                 vv
clus              R0 R1 RX
  AP2A2 MUTATED    4  1  0
  AP2A2 WILD-TYPE 38 23  2
D338V11, multiclass
    clus
vv   AP2A2 MUTATED AP2A2 WILD-TYPE
  R0             4              38
  R1             1              23
  RX             0               2
D338V12, continuous

Clustering(339) Variable = SMYD5 MUTATION ANALYSIS
D339V1, survival
                 sevent
clus2              0  1
  SMYD5 MUTATED    2  3
  SMYD5 WILD-TYPE 38 26
  SMYD5 MUTATED SMYD5 WILD-TYPE 
              5              64 
  SMYD5 MUTATED SMYD5 WILD-TYPE 
              3              26 
$`SMYD5 MUTATED`
TCGA-FB-A545 TCGA-HZ-8005 TCGA-IB-7647 TCGA-IB-7651 TCGA-LB-A7SX 
       12.66         3.95        21.90        19.82         4.18 

$`SMYD5 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P5 TCGA-FB-A4P6 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR TCGA-FZ-5920 
        0.13        11.93         2.47         0.03         5.46         2.01 
TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7289 
       36.20        20.81        12.89         7.66        13.02         7.89 
TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 
        0.92         0.66         0.13         0.26        12.13        11.87 
TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8315 TCGA-HZ-8317 
        0.26         0.62         0.79         0.69         0.92         0.53 
TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK 
        0.16         2.99         0.76         0.95         6.38         1.51 
TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7649 TCGA-IB-7652 TCGA-IB-7885 
       11.41        49.38         4.77        15.35        15.65        27.98 
TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 
        4.04         3.62        43.79        15.81        19.66        16.04 
TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP 
        3.85        15.98         0.56        17.16        10.82         9.86 
TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-OE-A75W TCGA-PZ-A5RE 
        7.20        15.12         0.26         1.35         3.62         8.12 
TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
       13.68        16.80        14.14        18.67 

  SMYD5 MUTATED SMYD5 WILD-TYPE 
           3.95            0.03 
  SMYD5 MUTATED SMYD5 WILD-TYPE 
          21.90           49.38 
  SMYD5 MUTATED SMYD5 WILD-TYPE 
          12.66            7.43 
[1] "4.0 - 21.9 (12.7)" "0.0 - 49.4 (7.4)" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"SMYD5 WILD-TYPE" "SMYD5 WILD-TYPE" "SMYD5 WILD-TYPE" "SMYD5 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"SMYD5 WILD-TYPE" "SMYD5 WILD-TYPE" "SMYD5 WILD-TYPE" "SMYD5 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
  "SMYD5 MUTATED" "SMYD5 WILD-TYPE" "SMYD5 WILD-TYPE" "SMYD5 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"SMYD5 WILD-TYPE" "SMYD5 WILD-TYPE" "SMYD5 WILD-TYPE" "SMYD5 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"SMYD5 WILD-TYPE" "SMYD5 WILD-TYPE" "SMYD5 WILD-TYPE" "SMYD5 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"SMYD5 WILD-TYPE" "SMYD5 WILD-TYPE" "SMYD5 WILD-TYPE" "SMYD5 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"SMYD5 WILD-TYPE" "SMYD5 WILD-TYPE" "SMYD5 WILD-TYPE" "SMYD5 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"SMYD5 WILD-TYPE"   "SMYD5 MUTATED" "SMYD5 WILD-TYPE" "SMYD5 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"SMYD5 WILD-TYPE" "SMYD5 WILD-TYPE" "SMYD5 WILD-TYPE" "SMYD5 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"SMYD5 WILD-TYPE" "SMYD5 WILD-TYPE" "SMYD5 WILD-TYPE" "SMYD5 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"SMYD5 WILD-TYPE"   "SMYD5 MUTATED" "SMYD5 WILD-TYPE"   "SMYD5 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"SMYD5 WILD-TYPE" "SMYD5 WILD-TYPE" "SMYD5 WILD-TYPE" "SMYD5 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"SMYD5 WILD-TYPE" "SMYD5 WILD-TYPE" "SMYD5 WILD-TYPE" "SMYD5 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"SMYD5 WILD-TYPE" "SMYD5 WILD-TYPE" "SMYD5 WILD-TYPE" "SMYD5 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"SMYD5 WILD-TYPE" "SMYD5 WILD-TYPE" "SMYD5 WILD-TYPE" "SMYD5 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"SMYD5 WILD-TYPE" "SMYD5 WILD-TYPE"   "SMYD5 MUTATED" "SMYD5 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"SMYD5 WILD-TYPE" "SMYD5 WILD-TYPE" "SMYD5 WILD-TYPE" "SMYD5 WILD-TYPE" 
     TCGA-US-A77J 
"SMYD5 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"SMYD5 WILD-TYPE" "SMYD5 WILD-TYPE" "SMYD5 WILD-TYPE" "SMYD5 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"SMYD5 WILD-TYPE" "SMYD5 WILD-TYPE" "SMYD5 WILD-TYPE" "SMYD5 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
  "SMYD5 MUTATED" "SMYD5 WILD-TYPE" "SMYD5 WILD-TYPE" "SMYD5 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"SMYD5 WILD-TYPE" "SMYD5 WILD-TYPE" "SMYD5 WILD-TYPE" "SMYD5 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"SMYD5 WILD-TYPE" "SMYD5 WILD-TYPE" "SMYD5 WILD-TYPE" "SMYD5 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"SMYD5 WILD-TYPE" "SMYD5 WILD-TYPE" "SMYD5 WILD-TYPE" "SMYD5 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"SMYD5 WILD-TYPE" "SMYD5 WILD-TYPE" "SMYD5 WILD-TYPE" "SMYD5 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"SMYD5 WILD-TYPE"   "SMYD5 MUTATED" "SMYD5 WILD-TYPE" "SMYD5 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"SMYD5 WILD-TYPE" "SMYD5 WILD-TYPE" "SMYD5 WILD-TYPE" "SMYD5 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"SMYD5 WILD-TYPE" "SMYD5 WILD-TYPE" "SMYD5 WILD-TYPE" "SMYD5 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"SMYD5 WILD-TYPE"   "SMYD5 MUTATED" "SMYD5 WILD-TYPE"   "SMYD5 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"SMYD5 WILD-TYPE" "SMYD5 WILD-TYPE" "SMYD5 WILD-TYPE" "SMYD5 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"SMYD5 WILD-TYPE" "SMYD5 WILD-TYPE" "SMYD5 WILD-TYPE" "SMYD5 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"SMYD5 WILD-TYPE" "SMYD5 WILD-TYPE" "SMYD5 WILD-TYPE" "SMYD5 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"SMYD5 WILD-TYPE" "SMYD5 WILD-TYPE" "SMYD5 WILD-TYPE" "SMYD5 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"SMYD5 WILD-TYPE" "SMYD5 WILD-TYPE"   "SMYD5 MUTATED" "SMYD5 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"SMYD5 WILD-TYPE" "SMYD5 WILD-TYPE" "SMYD5 WILD-TYPE" "SMYD5 WILD-TYPE" 
     TCGA-US-A77J 
"SMYD5 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"SMYD5 WILD-TYPE" "SMYD5 WILD-TYPE" "SMYD5 WILD-TYPE" "SMYD5 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"SMYD5 WILD-TYPE" "SMYD5 WILD-TYPE" "SMYD5 WILD-TYPE" "SMYD5 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
  "SMYD5 MUTATED" "SMYD5 WILD-TYPE" "SMYD5 WILD-TYPE" "SMYD5 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"SMYD5 WILD-TYPE" "SMYD5 WILD-TYPE" "SMYD5 WILD-TYPE" "SMYD5 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"SMYD5 WILD-TYPE" "SMYD5 WILD-TYPE" "SMYD5 WILD-TYPE" "SMYD5 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"SMYD5 WILD-TYPE" "SMYD5 WILD-TYPE" "SMYD5 WILD-TYPE" "SMYD5 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"SMYD5 WILD-TYPE" "SMYD5 WILD-TYPE" "SMYD5 WILD-TYPE" "SMYD5 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"SMYD5 WILD-TYPE"   "SMYD5 MUTATED" "SMYD5 WILD-TYPE" "SMYD5 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"SMYD5 WILD-TYPE" "SMYD5 WILD-TYPE" "SMYD5 WILD-TYPE" "SMYD5 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"SMYD5 WILD-TYPE" "SMYD5 WILD-TYPE" "SMYD5 WILD-TYPE" "SMYD5 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"SMYD5 WILD-TYPE"   "SMYD5 MUTATED" "SMYD5 WILD-TYPE"   "SMYD5 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"SMYD5 WILD-TYPE" "SMYD5 WILD-TYPE" "SMYD5 WILD-TYPE" "SMYD5 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"SMYD5 WILD-TYPE" "SMYD5 WILD-TYPE" "SMYD5 WILD-TYPE" "SMYD5 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"SMYD5 WILD-TYPE" "SMYD5 WILD-TYPE" "SMYD5 WILD-TYPE" "SMYD5 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"SMYD5 WILD-TYPE" "SMYD5 WILD-TYPE" "SMYD5 WILD-TYPE" "SMYD5 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"SMYD5 WILD-TYPE" "SMYD5 WILD-TYPE"   "SMYD5 MUTATED" "SMYD5 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"SMYD5 WILD-TYPE" "SMYD5 WILD-TYPE" "SMYD5 WILD-TYPE" "SMYD5 WILD-TYPE" 
     TCGA-US-A77J 
"SMYD5 WILD-TYPE" 
[1] "hr=" "1.1"
D339V2, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  SMYD5 MUTATED          0        0         0         5         0        0
  SMYD5 WILD-TYPE        1        4        11        46         2        3
D339V3, multiclass
                 vv
clus              T1+T2 T3+T4
  SMYD5 MUTATED       0     5
  SMYD5 WILD-TYPE     6    61
D339V4, multiclass
       clus
vv      SMYD5 MUTATED SMYD5 WILD-TYPE
  T1+T2             0               6
  T3+T4             5              61
D339V5, binary
                 cls
clus               0  1
  SMYD5 MUTATED    0  5
  SMYD5 WILD-TYPE 17 49
[1] "tbl2"
                 cls
clus              [,1] [,2]
  SMYD5 MUTATED      0    5
  SMYD5 WILD-TYPE   17   49
   clus
vv  SMYD5 MUTATED SMYD5 WILD-TYPE
  0             0              17
  1             5              49
                 vv
clus              M0 M1 MX
  SMYD5 MUTATED    3  0  2
  SMYD5 WILD-TYPE 36  3 28
D339V6, multiclass
    clus
vv   SMYD5 MUTATED SMYD5 WILD-TYPE
  M0             3              36
  M1             0               3
  MX             2              28
D339V7, binary
                 cls
clus               0  1
  SMYD5 MUTATED    4  1
  SMYD5 WILD-TYPE 32 35
[1] "tbl2"
                 cls
clus              [,1] [,2]
  SMYD5 MUTATED      4    1
  SMYD5 WILD-TYPE   32   35
        clus
vv       SMYD5 MUTATED SMYD5 WILD-TYPE
  FEMALE             4              32
  MALE               1              35
                 vv
clus              PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  SMYD5 MUTATED                                     5
  SMYD5 WILD-TYPE                                  60
                 vv
clus              PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  SMYD5 MUTATED                                       0
  SMYD5 WILD-TYPE                                     4
                 vv
clus              PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  SMYD5 MUTATED                                                  0
  SMYD5 WILD-TYPE                                                2
D339V8, multiclass
                                                  clus
vv                                                 SMYD5 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                          5
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                        0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA             0
                                                  clus
vv                                                 SMYD5 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                           60
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                          4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA               2
D339V9, continuous
[1] "Remove cluster labels:" "SMYD5 MUTATED"         
clus
  SMYD5 MUTATED SMYD5 WILD-TYPE 
              2              20 
     TCGA-F2-6880      TCGA-FB-A4P5      TCGA-FB-A4P6      TCGA-FB-A5VM 
"SMYD5 WILD-TYPE" "SMYD5 WILD-TYPE" "SMYD5 WILD-TYPE" "SMYD5 WILD-TYPE" 
     TCGA-FB-A78T      TCGA-FB-A7DR      TCGA-H6-8124      TCGA-H6-A45N 
"SMYD5 WILD-TYPE" "SMYD5 WILD-TYPE" "SMYD5 WILD-TYPE" "SMYD5 WILD-TYPE" 
     TCGA-H8-A6C1      TCGA-IB-7644      TCGA-IB-7649      TCGA-IB-7885 
"SMYD5 WILD-TYPE" "SMYD5 WILD-TYPE" "SMYD5 WILD-TYPE" "SMYD5 WILD-TYPE" 
     TCGA-IB-7886      TCGA-IB-7887      TCGA-IB-7891      TCGA-IB-8126 
"SMYD5 WILD-TYPE" "SMYD5 WILD-TYPE" "SMYD5 WILD-TYPE" "SMYD5 WILD-TYPE" 
     TCGA-IB-8127      TCGA-IB-A5SS      TCGA-IB-A6UG      TCGA-OE-A75W 
"SMYD5 WILD-TYPE" "SMYD5 WILD-TYPE" "SMYD5 WILD-TYPE" "SMYD5 WILD-TYPE" 
D339V10, continuous
[1] "Remove cluster labels:" "SMYD5 MUTATED"         
clus
  SMYD5 MUTATED SMYD5 WILD-TYPE 
              2              17 
     TCGA-FB-A4P5      TCGA-FB-A4P6      TCGA-FB-A5VM      TCGA-FB-A78T 
"SMYD5 WILD-TYPE" "SMYD5 WILD-TYPE" "SMYD5 WILD-TYPE" "SMYD5 WILD-TYPE" 
     TCGA-FB-A7DR      TCGA-H6-8124      TCGA-H8-A6C1      TCGA-IB-7644 
"SMYD5 WILD-TYPE" "SMYD5 WILD-TYPE" "SMYD5 WILD-TYPE" "SMYD5 WILD-TYPE" 
     TCGA-IB-7649      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7891 
"SMYD5 WILD-TYPE" "SMYD5 WILD-TYPE" "SMYD5 WILD-TYPE" "SMYD5 WILD-TYPE" 
     TCGA-IB-8126      TCGA-IB-8127      TCGA-IB-A5SS      TCGA-IB-A6UG 
"SMYD5 WILD-TYPE" "SMYD5 WILD-TYPE" "SMYD5 WILD-TYPE" "SMYD5 WILD-TYPE" 
     TCGA-OE-A75W 
"SMYD5 WILD-TYPE" 
                 vv
clus              R0 R1 RX
  SMYD5 MUTATED    1  3  0
  SMYD5 WILD-TYPE 41 21  2
D339V11, multiclass
    clus
vv   SMYD5 MUTATED SMYD5 WILD-TYPE
  R0             1              41
  R1             3              21
  RX             0               2
D339V12, continuous

Clustering(340) Variable = CXORF66 MUTATION ANALYSIS
D340V1, survival
                   sevent
clus2                0  1
  CXORF66 MUTATED    2  1
  CXORF66 WILD-TYPE 38 28
  CXORF66 MUTATED CXORF66 WILD-TYPE 
                3                66 
  CXORF66 MUTATED CXORF66 WILD-TYPE 
                1                28 
$`CXORF66 MUTATED`
TCGA-HZ-7289 TCGA-HZ-8638 TCGA-IB-7644 
        7.89         2.99        11.41 

$`CXORF66 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P5 TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR 
        0.13        11.93        12.66         2.47         0.03         5.46 
TCGA-FZ-5920 TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 
        2.01        36.20        20.81        12.89         7.66        13.02 
TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 
        0.92         0.66         0.13         0.26        12.13        11.87 
TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 
        0.26         0.62         0.79         0.69         3.95         0.92 
TCGA-HZ-8317 TCGA-HZ-8636 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK 
        0.53         0.16         0.76         0.95         6.38         1.51 
TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7651 TCGA-IB-7652 
       49.38         4.77        21.90        15.35        19.82        15.65 
TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 
       27.98         4.04         3.62        43.79        15.81        19.66 
TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO 
       16.04         3.85        15.98         0.56        17.16        10.82 
TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX 
        9.86         7.20        15.12         0.26         1.35         4.18 
TCGA-OE-A75W TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
        3.62         8.12        13.68        16.80        14.14        18.67 

  CXORF66 MUTATED CXORF66 WILD-TYPE 
             2.99              0.03 
  CXORF66 MUTATED CXORF66 WILD-TYPE 
            11.41             49.38 
  CXORF66 MUTATED CXORF66 WILD-TYPE 
             7.89              7.43 
[1] "3.0 - 11.4 (7.9)" "0.0 - 49.4 (7.4)"
       TCGA-F2-6879        TCGA-F2-6880        TCGA-F2-7273        TCGA-F2-7276 
"CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" 
       TCGA-F2-A44G        TCGA-F2-A44H        TCGA-FB-A4P5        TCGA-FB-A4P6 
"CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" 
       TCGA-FB-A545        TCGA-FB-A5VM        TCGA-FB-A78T        TCGA-FB-A7DR 
"CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" 
       TCGA-FZ-5920        TCGA-FZ-5922        TCGA-FZ-5923        TCGA-H6-8124 
"CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" 
       TCGA-H6-A45N        TCGA-H8-A6C1        TCGA-HZ-7289        TCGA-HZ-7918 
"CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE"   "CXORF66 MUTATED" "CXORF66 WILD-TYPE" 
       TCGA-HZ-7919        TCGA-HZ-7922        TCGA-HZ-7923        TCGA-HZ-7924 
"CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" 
       TCGA-HZ-7925        TCGA-HZ-7926        TCGA-HZ-8001        TCGA-HZ-8002 
"CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" 
       TCGA-HZ-8003        TCGA-HZ-8005        TCGA-HZ-8315        TCGA-HZ-8317 
"CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" 
       TCGA-HZ-8636        TCGA-HZ-8638        TCGA-HZ-A49G        TCGA-HZ-A49H 
"CXORF66 WILD-TYPE"   "CXORF66 MUTATED" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" 
       TCGA-HZ-A4BH        TCGA-HZ-A4BK        TCGA-IB-7644        TCGA-IB-7645 
"CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE"   "CXORF66 MUTATED" "CXORF66 WILD-TYPE" 
       TCGA-IB-7646        TCGA-IB-7647        TCGA-IB-7649        TCGA-IB-7651 
"CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" 
       TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-7886        TCGA-IB-7887 
"CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" 
       TCGA-IB-7888        TCGA-IB-7889        TCGA-IB-7890        TCGA-IB-7891 
"CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" 
       TCGA-IB-7893        TCGA-IB-7897        TCGA-IB-8126        TCGA-IB-8127 
"CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" 
       TCGA-IB-A5SO        TCGA-IB-A5SP        TCGA-IB-A5SQ        TCGA-IB-A5SS 
"CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" 
       TCGA-IB-A5ST        TCGA-IB-A6UG        TCGA-LB-A7SX        TCGA-OE-A75W 
"CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" 
       TCGA-PZ-A5RE        TCGA-Q3-A5QY        TCGA-US-A779        TCGA-US-A77E 
"CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" 
       TCGA-US-A77J 
"CXORF66 WILD-TYPE" 
       TCGA-F2-6879        TCGA-F2-6880        TCGA-F2-7273        TCGA-F2-7276 
"CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" 
       TCGA-F2-A44G        TCGA-F2-A44H        TCGA-FB-A4P5        TCGA-FB-A4P6 
"CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" 
       TCGA-FB-A545        TCGA-FB-A5VM        TCGA-FB-A78T        TCGA-FB-A7DR 
"CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" 
       TCGA-FZ-5920        TCGA-FZ-5922        TCGA-FZ-5923        TCGA-H6-8124 
"CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" 
       TCGA-H6-A45N        TCGA-H8-A6C1        TCGA-HZ-7289        TCGA-HZ-7918 
"CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE"   "CXORF66 MUTATED" "CXORF66 WILD-TYPE" 
       TCGA-HZ-7919        TCGA-HZ-7922        TCGA-HZ-7923        TCGA-HZ-7924 
"CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" 
       TCGA-HZ-7925        TCGA-HZ-7926        TCGA-HZ-8001        TCGA-HZ-8002 
"CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" 
       TCGA-HZ-8003        TCGA-HZ-8005        TCGA-HZ-8315        TCGA-HZ-8317 
"CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" 
       TCGA-HZ-8636        TCGA-HZ-8638        TCGA-HZ-A49G        TCGA-HZ-A49H 
"CXORF66 WILD-TYPE"   "CXORF66 MUTATED" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" 
       TCGA-HZ-A4BH        TCGA-HZ-A4BK        TCGA-IB-7644        TCGA-IB-7645 
"CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE"   "CXORF66 MUTATED" "CXORF66 WILD-TYPE" 
       TCGA-IB-7646        TCGA-IB-7647        TCGA-IB-7649        TCGA-IB-7651 
"CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" 
       TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-7886        TCGA-IB-7887 
"CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" 
       TCGA-IB-7888        TCGA-IB-7889        TCGA-IB-7890        TCGA-IB-7891 
"CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" 
       TCGA-IB-7893        TCGA-IB-7897        TCGA-IB-8126        TCGA-IB-8127 
"CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" 
       TCGA-IB-A5SO        TCGA-IB-A5SP        TCGA-IB-A5SQ        TCGA-IB-A5SS 
"CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" 
       TCGA-IB-A5ST        TCGA-IB-A6UG        TCGA-LB-A7SX        TCGA-OE-A75W 
"CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" 
       TCGA-PZ-A5RE        TCGA-Q3-A5QY        TCGA-US-A779        TCGA-US-A77E 
"CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" 
       TCGA-US-A77J 
"CXORF66 WILD-TYPE" 
       TCGA-F2-6879        TCGA-F2-6880        TCGA-F2-7273        TCGA-F2-7276 
"CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" 
       TCGA-F2-A44G        TCGA-F2-A44H        TCGA-FB-A4P5        TCGA-FB-A4P6 
"CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" 
       TCGA-FB-A545        TCGA-FB-A5VM        TCGA-FB-A78T        TCGA-FB-A7DR 
"CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" 
       TCGA-FZ-5920        TCGA-FZ-5922        TCGA-FZ-5923        TCGA-H6-8124 
"CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" 
       TCGA-H6-A45N        TCGA-H8-A6C1        TCGA-HZ-7289        TCGA-HZ-7918 
"CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE"   "CXORF66 MUTATED" "CXORF66 WILD-TYPE" 
       TCGA-HZ-7919        TCGA-HZ-7922        TCGA-HZ-7923        TCGA-HZ-7924 
"CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" 
       TCGA-HZ-7925        TCGA-HZ-7926        TCGA-HZ-8001        TCGA-HZ-8002 
"CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" 
       TCGA-HZ-8003        TCGA-HZ-8005        TCGA-HZ-8315        TCGA-HZ-8317 
"CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" 
       TCGA-HZ-8636        TCGA-HZ-8638        TCGA-HZ-A49G        TCGA-HZ-A49H 
"CXORF66 WILD-TYPE"   "CXORF66 MUTATED" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" 
       TCGA-HZ-A4BH        TCGA-HZ-A4BK        TCGA-IB-7644        TCGA-IB-7645 
"CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE"   "CXORF66 MUTATED" "CXORF66 WILD-TYPE" 
       TCGA-IB-7646        TCGA-IB-7647        TCGA-IB-7649        TCGA-IB-7651 
"CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" 
       TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-7886        TCGA-IB-7887 
"CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" 
       TCGA-IB-7888        TCGA-IB-7889        TCGA-IB-7890        TCGA-IB-7891 
"CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" 
       TCGA-IB-7893        TCGA-IB-7897        TCGA-IB-8126        TCGA-IB-8127 
"CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" 
       TCGA-IB-A5SO        TCGA-IB-A5SP        TCGA-IB-A5SQ        TCGA-IB-A5SS 
"CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" 
       TCGA-IB-A5ST        TCGA-IB-A6UG        TCGA-LB-A7SX        TCGA-OE-A75W 
"CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" 
       TCGA-PZ-A5RE        TCGA-Q3-A5QY        TCGA-US-A779        TCGA-US-A77E 
"CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" 
       TCGA-US-A77J 
"CXORF66 WILD-TYPE" 
[1] "hr=" "1.5"
D340V2, continuous
                   vv
clus                STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  CXORF66 MUTATED          1        0         0         1         0        1
  CXORF66 WILD-TYPE        0        4        11        50         2        2
D340V3, multiclass
                   vv
clus                T1+T2 T3+T4
  CXORF66 MUTATED       1     2
  CXORF66 WILD-TYPE     5    64
D340V4, multiclass
       clus
vv      CXORF66 MUTATED CXORF66 WILD-TYPE
  T1+T2               1                 5
  T3+T4               2                64
D340V5, binary
                   cls
clus                 0  1
  CXORF66 MUTATED    1  2
  CXORF66 WILD-TYPE 16 52
[1] "tbl2"
                   cls
clus                [,1] [,2]
  CXORF66 MUTATED      1    2
  CXORF66 WILD-TYPE   16   52
   clus
vv  CXORF66 MUTATED CXORF66 WILD-TYPE
  0               1                16
  1               2                52
                   vv
clus                M0 M1 MX
  CXORF66 MUTATED    0  1  2
  CXORF66 WILD-TYPE 39  2 28
D340V6, multiclass
    clus
vv   CXORF66 MUTATED CXORF66 WILD-TYPE
  M0               0                39
  M1               1                 2
  MX               2                28
D340V7, binary
                   cls
clus                 0  1
  CXORF66 MUTATED    2  1
  CXORF66 WILD-TYPE 34 35
[1] "tbl2"
                   cls
clus                [,1] [,2]
  CXORF66 MUTATED      2    1
  CXORF66 WILD-TYPE   34   35
        clus
vv       CXORF66 MUTATED CXORF66 WILD-TYPE
  FEMALE               2                34
  MALE                 1                35
                   vv
clus                PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  CXORF66 MUTATED                                     1
  CXORF66 WILD-TYPE                                  64
                   vv
clus                PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  CXORF66 MUTATED                                       1
  CXORF66 WILD-TYPE                                     3
                   vv
clus                PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  CXORF66 MUTATED                                                  1
  CXORF66 WILD-TYPE                                                1
D340V8, multiclass
                                                  clus
vv                                                 CXORF66 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                            1
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                          1
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA               1
                                                  clus
vv                                                 CXORF66 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                             64
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                            3
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                 1
D340V9, continuous
[1] "Remove cluster labels:" "CXORF66 MUTATED"       
clus
  CXORF66 MUTATED CXORF66 WILD-TYPE 
                1                21 
       TCGA-F2-6880        TCGA-FB-A4P5        TCGA-FB-A4P6        TCGA-FB-A5VM 
"CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" 
       TCGA-FB-A78T        TCGA-FB-A7DR        TCGA-H6-8124        TCGA-H6-A45N 
"CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" 
       TCGA-H8-A6C1        TCGA-IB-7649        TCGA-IB-7651        TCGA-IB-7885 
"CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" 
       TCGA-IB-7886        TCGA-IB-7887        TCGA-IB-7891        TCGA-IB-8126 
"CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" 
       TCGA-IB-8127        TCGA-IB-A5SS        TCGA-IB-A6UG        TCGA-LB-A7SX 
"CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" 
       TCGA-OE-A75W 
"CXORF66 WILD-TYPE" 
D340V10, continuous
[1] "Remove cluster labels:" "CXORF66 MUTATED"       
clus
  CXORF66 MUTATED CXORF66 WILD-TYPE 
                1                18 
       TCGA-FB-A4P5        TCGA-FB-A4P6        TCGA-FB-A5VM        TCGA-FB-A78T 
"CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" 
       TCGA-FB-A7DR        TCGA-H6-8124        TCGA-H8-A6C1        TCGA-IB-7649 
"CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" 
       TCGA-IB-7651        TCGA-IB-7885        TCGA-IB-7886        TCGA-IB-7891 
"CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" 
       TCGA-IB-8126        TCGA-IB-8127        TCGA-IB-A5SS        TCGA-IB-A6UG 
"CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" 
       TCGA-LB-A7SX        TCGA-OE-A75W 
"CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" 
                   vv
clus                R0 R1 RX
  CXORF66 MUTATED    1  1  1
  CXORF66 WILD-TYPE 41 23  1
D340V11, multiclass
    clus
vv   CXORF66 MUTATED CXORF66 WILD-TYPE
  R0               1                41
  R1               1                23
  RX               1                 1
D340V12, continuous

Clustering(341) Variable = NKTR MUTATION ANALYSIS
D341V1, survival
                sevent
clus2             0  1
  NKTR MUTATED    4  2
  NKTR WILD-TYPE 36 27
  NKTR MUTATED NKTR WILD-TYPE 
             6             63 
  NKTR MUTATED NKTR WILD-TYPE 
             2             27 
$`NKTR MUTATED`
TCGA-HZ-7922 TCGA-HZ-8003 TCGA-IB-7645 TCGA-IB-7651 TCGA-IB-7652 TCGA-IB-8126 
        0.13         0.69        49.38        19.82        15.65         0.56 

$`NKTR WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P5 TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR 
        0.13        11.93        12.66         2.47         0.03         5.46 
TCGA-FZ-5920 TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 
        2.01        36.20        20.81        12.89         7.66        13.02 
TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 
        7.89         0.92         0.66         0.26        12.13        11.87 
TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 
        0.26         0.62         0.79         3.95         0.92         0.53 
TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK 
        0.16         2.99         0.76         0.95         6.38         1.51 
TCGA-IB-7644 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7885 TCGA-IB-7886 
       11.41         4.77        21.90        15.35        27.98         4.04 
TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-7893 
        3.62        43.79        15.81        19.66        16.04         3.85 
TCGA-IB-7897 TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS 
       15.98        17.16        10.82         9.86         7.20        15.12 
TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W TCGA-PZ-A5RE TCGA-Q3-A5QY 
        0.26         1.35         4.18         3.62         8.12        13.68 
TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
       16.80        14.14        18.67 

  NKTR MUTATED NKTR WILD-TYPE 
          0.13           0.03 
  NKTR MUTATED NKTR WILD-TYPE 
         49.38          43.79 
  NKTR MUTATED NKTR WILD-TYPE 
          8.17           7.66 
[1] "0.1 - 49.4 (8.2)" "0.0 - 43.8 (7.7)"
    TCGA-F2-6879     TCGA-F2-6880     TCGA-F2-7273     TCGA-F2-7276 
"NKTR WILD-TYPE" "NKTR WILD-TYPE" "NKTR WILD-TYPE" "NKTR WILD-TYPE" 
    TCGA-F2-A44G     TCGA-F2-A44H     TCGA-FB-A4P5     TCGA-FB-A4P6 
"NKTR WILD-TYPE" "NKTR WILD-TYPE" "NKTR WILD-TYPE" "NKTR WILD-TYPE" 
    TCGA-FB-A545     TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-FB-A7DR 
"NKTR WILD-TYPE" "NKTR WILD-TYPE" "NKTR WILD-TYPE" "NKTR WILD-TYPE" 
    TCGA-FZ-5920     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-H6-8124 
"NKTR WILD-TYPE" "NKTR WILD-TYPE" "NKTR WILD-TYPE" "NKTR WILD-TYPE" 
    TCGA-H6-A45N     TCGA-H8-A6C1     TCGA-HZ-7289     TCGA-HZ-7918 
"NKTR WILD-TYPE" "NKTR WILD-TYPE" "NKTR WILD-TYPE" "NKTR WILD-TYPE" 
    TCGA-HZ-7919     TCGA-HZ-7922     TCGA-HZ-7923     TCGA-HZ-7924 
"NKTR WILD-TYPE"   "NKTR MUTATED" "NKTR WILD-TYPE" "NKTR WILD-TYPE" 
    TCGA-HZ-7925     TCGA-HZ-7926     TCGA-HZ-8001     TCGA-HZ-8002 
"NKTR WILD-TYPE" "NKTR WILD-TYPE" "NKTR WILD-TYPE" "NKTR WILD-TYPE" 
    TCGA-HZ-8003     TCGA-HZ-8005     TCGA-HZ-8315     TCGA-HZ-8317 
  "NKTR MUTATED" "NKTR WILD-TYPE" "NKTR WILD-TYPE" "NKTR WILD-TYPE" 
    TCGA-HZ-8636     TCGA-HZ-8638     TCGA-HZ-A49G     TCGA-HZ-A49H 
"NKTR WILD-TYPE" "NKTR WILD-TYPE" "NKTR WILD-TYPE" "NKTR WILD-TYPE" 
    TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-IB-7644     TCGA-IB-7645 
"NKTR WILD-TYPE" "NKTR WILD-TYPE" "NKTR WILD-TYPE"   "NKTR MUTATED" 
    TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7651 
"NKTR WILD-TYPE" "NKTR WILD-TYPE" "NKTR WILD-TYPE"   "NKTR MUTATED" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887 
  "NKTR MUTATED" "NKTR WILD-TYPE" "NKTR WILD-TYPE" "NKTR WILD-TYPE" 
    TCGA-IB-7888     TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891 
"NKTR WILD-TYPE" "NKTR WILD-TYPE" "NKTR WILD-TYPE" "NKTR WILD-TYPE" 
    TCGA-IB-7893     TCGA-IB-7897     TCGA-IB-8126     TCGA-IB-8127 
"NKTR WILD-TYPE" "NKTR WILD-TYPE"   "NKTR MUTATED" "NKTR WILD-TYPE" 
    TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS 
"NKTR WILD-TYPE" "NKTR WILD-TYPE" "NKTR WILD-TYPE" "NKTR WILD-TYPE" 
    TCGA-IB-A5ST     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
"NKTR WILD-TYPE" "NKTR WILD-TYPE" "NKTR WILD-TYPE" "NKTR WILD-TYPE" 
    TCGA-PZ-A5RE     TCGA-Q3-A5QY     TCGA-US-A779     TCGA-US-A77E 
"NKTR WILD-TYPE" "NKTR WILD-TYPE" "NKTR WILD-TYPE" "NKTR WILD-TYPE" 
    TCGA-US-A77J 
"NKTR WILD-TYPE" 
    TCGA-F2-6879     TCGA-F2-6880     TCGA-F2-7273     TCGA-F2-7276 
"NKTR WILD-TYPE" "NKTR WILD-TYPE" "NKTR WILD-TYPE" "NKTR WILD-TYPE" 
    TCGA-F2-A44G     TCGA-F2-A44H     TCGA-FB-A4P5     TCGA-FB-A4P6 
"NKTR WILD-TYPE" "NKTR WILD-TYPE" "NKTR WILD-TYPE" "NKTR WILD-TYPE" 
    TCGA-FB-A545     TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-FB-A7DR 
"NKTR WILD-TYPE" "NKTR WILD-TYPE" "NKTR WILD-TYPE" "NKTR WILD-TYPE" 
    TCGA-FZ-5920     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-H6-8124 
"NKTR WILD-TYPE" "NKTR WILD-TYPE" "NKTR WILD-TYPE" "NKTR WILD-TYPE" 
    TCGA-H6-A45N     TCGA-H8-A6C1     TCGA-HZ-7289     TCGA-HZ-7918 
"NKTR WILD-TYPE" "NKTR WILD-TYPE" "NKTR WILD-TYPE" "NKTR WILD-TYPE" 
    TCGA-HZ-7919     TCGA-HZ-7922     TCGA-HZ-7923     TCGA-HZ-7924 
"NKTR WILD-TYPE"   "NKTR MUTATED" "NKTR WILD-TYPE" "NKTR WILD-TYPE" 
    TCGA-HZ-7925     TCGA-HZ-7926     TCGA-HZ-8001     TCGA-HZ-8002 
"NKTR WILD-TYPE" "NKTR WILD-TYPE" "NKTR WILD-TYPE" "NKTR WILD-TYPE" 
    TCGA-HZ-8003     TCGA-HZ-8005     TCGA-HZ-8315     TCGA-HZ-8317 
  "NKTR MUTATED" "NKTR WILD-TYPE" "NKTR WILD-TYPE" "NKTR WILD-TYPE" 
    TCGA-HZ-8636     TCGA-HZ-8638     TCGA-HZ-A49G     TCGA-HZ-A49H 
"NKTR WILD-TYPE" "NKTR WILD-TYPE" "NKTR WILD-TYPE" "NKTR WILD-TYPE" 
    TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-IB-7644     TCGA-IB-7645 
"NKTR WILD-TYPE" "NKTR WILD-TYPE" "NKTR WILD-TYPE"   "NKTR MUTATED" 
    TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7651 
"NKTR WILD-TYPE" "NKTR WILD-TYPE" "NKTR WILD-TYPE"   "NKTR MUTATED" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887 
  "NKTR MUTATED" "NKTR WILD-TYPE" "NKTR WILD-TYPE" "NKTR WILD-TYPE" 
    TCGA-IB-7888     TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891 
"NKTR WILD-TYPE" "NKTR WILD-TYPE" "NKTR WILD-TYPE" "NKTR WILD-TYPE" 
    TCGA-IB-7893     TCGA-IB-7897     TCGA-IB-8126     TCGA-IB-8127 
"NKTR WILD-TYPE" "NKTR WILD-TYPE"   "NKTR MUTATED" "NKTR WILD-TYPE" 
    TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS 
"NKTR WILD-TYPE" "NKTR WILD-TYPE" "NKTR WILD-TYPE" "NKTR WILD-TYPE" 
    TCGA-IB-A5ST     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
"NKTR WILD-TYPE" "NKTR WILD-TYPE" "NKTR WILD-TYPE" "NKTR WILD-TYPE" 
    TCGA-PZ-A5RE     TCGA-Q3-A5QY     TCGA-US-A779     TCGA-US-A77E 
"NKTR WILD-TYPE" "NKTR WILD-TYPE" "NKTR WILD-TYPE" "NKTR WILD-TYPE" 
    TCGA-US-A77J 
"NKTR WILD-TYPE" 
    TCGA-F2-6879     TCGA-F2-6880     TCGA-F2-7273     TCGA-F2-7276 
"NKTR WILD-TYPE" "NKTR WILD-TYPE" "NKTR WILD-TYPE" "NKTR WILD-TYPE" 
    TCGA-F2-A44G     TCGA-F2-A44H     TCGA-FB-A4P5     TCGA-FB-A4P6 
"NKTR WILD-TYPE" "NKTR WILD-TYPE" "NKTR WILD-TYPE" "NKTR WILD-TYPE" 
    TCGA-FB-A545     TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-FB-A7DR 
"NKTR WILD-TYPE" "NKTR WILD-TYPE" "NKTR WILD-TYPE" "NKTR WILD-TYPE" 
    TCGA-FZ-5920     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-H6-8124 
"NKTR WILD-TYPE" "NKTR WILD-TYPE" "NKTR WILD-TYPE" "NKTR WILD-TYPE" 
    TCGA-H6-A45N     TCGA-H8-A6C1     TCGA-HZ-7289     TCGA-HZ-7918 
"NKTR WILD-TYPE" "NKTR WILD-TYPE" "NKTR WILD-TYPE" "NKTR WILD-TYPE" 
    TCGA-HZ-7919     TCGA-HZ-7922     TCGA-HZ-7923     TCGA-HZ-7924 
"NKTR WILD-TYPE"   "NKTR MUTATED" "NKTR WILD-TYPE" "NKTR WILD-TYPE" 
    TCGA-HZ-7925     TCGA-HZ-7926     TCGA-HZ-8001     TCGA-HZ-8002 
"NKTR WILD-TYPE" "NKTR WILD-TYPE" "NKTR WILD-TYPE" "NKTR WILD-TYPE" 
    TCGA-HZ-8003     TCGA-HZ-8005     TCGA-HZ-8315     TCGA-HZ-8317 
  "NKTR MUTATED" "NKTR WILD-TYPE" "NKTR WILD-TYPE" "NKTR WILD-TYPE" 
    TCGA-HZ-8636     TCGA-HZ-8638     TCGA-HZ-A49G     TCGA-HZ-A49H 
"NKTR WILD-TYPE" "NKTR WILD-TYPE" "NKTR WILD-TYPE" "NKTR WILD-TYPE" 
    TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-IB-7644     TCGA-IB-7645 
"NKTR WILD-TYPE" "NKTR WILD-TYPE" "NKTR WILD-TYPE"   "NKTR MUTATED" 
    TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7651 
"NKTR WILD-TYPE" "NKTR WILD-TYPE" "NKTR WILD-TYPE"   "NKTR MUTATED" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887 
  "NKTR MUTATED" "NKTR WILD-TYPE" "NKTR WILD-TYPE" "NKTR WILD-TYPE" 
    TCGA-IB-7888     TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891 
"NKTR WILD-TYPE" "NKTR WILD-TYPE" "NKTR WILD-TYPE" "NKTR WILD-TYPE" 
    TCGA-IB-7893     TCGA-IB-7897     TCGA-IB-8126     TCGA-IB-8127 
"NKTR WILD-TYPE" "NKTR WILD-TYPE"   "NKTR MUTATED" "NKTR WILD-TYPE" 
    TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS 
"NKTR WILD-TYPE" "NKTR WILD-TYPE" "NKTR WILD-TYPE" "NKTR WILD-TYPE" 
    TCGA-IB-A5ST     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
"NKTR WILD-TYPE" "NKTR WILD-TYPE" "NKTR WILD-TYPE" "NKTR WILD-TYPE" 
    TCGA-PZ-A5RE     TCGA-Q3-A5QY     TCGA-US-A779     TCGA-US-A77E 
"NKTR WILD-TYPE" "NKTR WILD-TYPE" "NKTR WILD-TYPE" "NKTR WILD-TYPE" 
    TCGA-US-A77J 
"NKTR WILD-TYPE" 
[1] "hr=" "5"  
D341V2, continuous
                vv
clus             STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  NKTR MUTATED          0        0         0         5         1        0
  NKTR WILD-TYPE        1        4        11        46         1        3
D341V3, multiclass
                vv
clus             T1+T2 T3+T4
  NKTR MUTATED       0     6
  NKTR WILD-TYPE     6    60
D341V4, multiclass
       clus
vv      NKTR MUTATED NKTR WILD-TYPE
  T1+T2            0              6
  T3+T4            6             60
D341V5, binary
                cls
clus              0  1
  NKTR MUTATED    0  6
  NKTR WILD-TYPE 17 48
[1] "tbl2"
                cls
clus             [,1] [,2]
  NKTR MUTATED      0    6
  NKTR WILD-TYPE   17   48
   clus
vv  NKTR MUTATED NKTR WILD-TYPE
  0            0             17
  1            6             48
                vv
clus             M0 M1 MX
  NKTR MUTATED    4  0  2
  NKTR WILD-TYPE 35  3 28
D341V6, multiclass
    clus
vv   NKTR MUTATED NKTR WILD-TYPE
  M0            4             35
  M1            0              3
  MX            2             28
D341V7, binary
                cls
clus              0  1
  NKTR MUTATED    6  0
  NKTR WILD-TYPE 30 36
[1] "tbl2"
                cls
clus             [,1] [,2]
  NKTR MUTATED      6    0
  NKTR WILD-TYPE   30   36
        clus
vv       NKTR MUTATED NKTR WILD-TYPE
  FEMALE            6             30
  MALE              0             36
                vv
clus             PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  NKTR MUTATED                                     6
  NKTR WILD-TYPE                                  59
                vv
clus             PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  NKTR MUTATED                                       0
  NKTR WILD-TYPE                                     4
                vv
clus             PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  NKTR MUTATED                                                  0
  NKTR WILD-TYPE                                                2
D341V8, multiclass
                                                  clus
vv                                                 NKTR MUTATED NKTR WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                         6             59
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                       0              4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA            0              2
D341V9, continuous
[1] "Remove cluster labels:" "NKTR MUTATED"          
clus
  NKTR MUTATED NKTR WILD-TYPE 
             2             20 
    TCGA-F2-6880     TCGA-FB-A4P5     TCGA-FB-A4P6     TCGA-FB-A5VM 
"NKTR WILD-TYPE" "NKTR WILD-TYPE" "NKTR WILD-TYPE" "NKTR WILD-TYPE" 
    TCGA-FB-A78T     TCGA-FB-A7DR     TCGA-H6-8124     TCGA-H6-A45N 
"NKTR WILD-TYPE" "NKTR WILD-TYPE" "NKTR WILD-TYPE" "NKTR WILD-TYPE" 
    TCGA-H8-A6C1     TCGA-IB-7644     TCGA-IB-7649     TCGA-IB-7885 
"NKTR WILD-TYPE" "NKTR WILD-TYPE" "NKTR WILD-TYPE" "NKTR WILD-TYPE" 
    TCGA-IB-7886     TCGA-IB-7887     TCGA-IB-7891     TCGA-IB-8127 
"NKTR WILD-TYPE" "NKTR WILD-TYPE" "NKTR WILD-TYPE" "NKTR WILD-TYPE" 
    TCGA-IB-A5SS     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
"NKTR WILD-TYPE" "NKTR WILD-TYPE" "NKTR WILD-TYPE" "NKTR WILD-TYPE" 
D341V10, continuous
[1] "Remove cluster labels:" "NKTR MUTATED"          
clus
  NKTR MUTATED NKTR WILD-TYPE 
             2             17 
    TCGA-FB-A4P5     TCGA-FB-A4P6     TCGA-FB-A5VM     TCGA-FB-A78T 
"NKTR WILD-TYPE" "NKTR WILD-TYPE" "NKTR WILD-TYPE" "NKTR WILD-TYPE" 
    TCGA-FB-A7DR     TCGA-H6-8124     TCGA-H8-A6C1     TCGA-IB-7644 
"NKTR WILD-TYPE" "NKTR WILD-TYPE" "NKTR WILD-TYPE" "NKTR WILD-TYPE" 
    TCGA-IB-7649     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7891 
"NKTR WILD-TYPE" "NKTR WILD-TYPE" "NKTR WILD-TYPE" "NKTR WILD-TYPE" 
    TCGA-IB-8127     TCGA-IB-A5SS     TCGA-IB-A6UG     TCGA-LB-A7SX 
"NKTR WILD-TYPE" "NKTR WILD-TYPE" "NKTR WILD-TYPE" "NKTR WILD-TYPE" 
    TCGA-OE-A75W 
"NKTR WILD-TYPE" 
                vv
clus             R0 R1 RX
  NKTR MUTATED    4  2  0
  NKTR WILD-TYPE 38 22  2
D341V11, multiclass
    clus
vv   NKTR MUTATED NKTR WILD-TYPE
  R0            4             38
  R1            2             22
  RX            0              2
D341V12, continuous

Clustering(342) Variable = RTEL1 MUTATION ANALYSIS
D342V1, survival
                 sevent
clus2              0  1
  RTEL1 MUTATED    2  3
  RTEL1 WILD-TYPE 38 26
  RTEL1 MUTATED RTEL1 WILD-TYPE 
              5              64 
  RTEL1 MUTATED RTEL1 WILD-TYPE 
              3              26 
$`RTEL1 MUTATED`
TCGA-HZ-8003 TCGA-HZ-8005 TCGA-IB-7651 TCGA-IB-7897 TCGA-IB-8127 
        0.69         3.95        19.82        15.98        17.16 

$`RTEL1 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P5 TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR 
        0.13        11.93        12.66         2.47         0.03         5.46 
TCGA-FZ-5920 TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 
        2.01        36.20        20.81        12.89         7.66        13.02 
TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 
        7.89         0.92         0.66         0.13         0.26        12.13 
TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8315 TCGA-HZ-8317 
       11.87         0.26         0.62         0.79         0.92         0.53 
TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK 
        0.16         2.99         0.76         0.95         6.38         1.51 
TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7652 
       11.41        49.38         4.77        21.90        15.35        15.65 
TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 
       27.98         4.04         3.62        43.79        15.81        19.66 
TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-8126 TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ 
       16.04         3.85         0.56        10.82         9.86         7.20 
TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W TCGA-PZ-A5RE 
       15.12         0.26         1.35         4.18         3.62         8.12 
TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
       13.68        16.80        14.14        18.67 

  RTEL1 MUTATED RTEL1 WILD-TYPE 
           0.69            0.03 
  RTEL1 MUTATED RTEL1 WILD-TYPE 
          19.82           49.38 
  RTEL1 MUTATED RTEL1 WILD-TYPE 
          15.98            7.43 
[1] "0.7 - 19.8 (16.0)" "0.0 - 49.4 (7.4)" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"RTEL1 WILD-TYPE" "RTEL1 WILD-TYPE" "RTEL1 WILD-TYPE" "RTEL1 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"RTEL1 WILD-TYPE" "RTEL1 WILD-TYPE" "RTEL1 WILD-TYPE" "RTEL1 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"RTEL1 WILD-TYPE" "RTEL1 WILD-TYPE" "RTEL1 WILD-TYPE" "RTEL1 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"RTEL1 WILD-TYPE" "RTEL1 WILD-TYPE" "RTEL1 WILD-TYPE" "RTEL1 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"RTEL1 WILD-TYPE" "RTEL1 WILD-TYPE" "RTEL1 WILD-TYPE" "RTEL1 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"RTEL1 WILD-TYPE" "RTEL1 WILD-TYPE" "RTEL1 WILD-TYPE" "RTEL1 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"RTEL1 WILD-TYPE" "RTEL1 WILD-TYPE" "RTEL1 WILD-TYPE" "RTEL1 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
  "RTEL1 MUTATED"   "RTEL1 MUTATED" "RTEL1 WILD-TYPE" "RTEL1 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"RTEL1 WILD-TYPE" "RTEL1 WILD-TYPE" "RTEL1 WILD-TYPE" "RTEL1 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"RTEL1 WILD-TYPE" "RTEL1 WILD-TYPE" "RTEL1 WILD-TYPE" "RTEL1 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"RTEL1 WILD-TYPE" "RTEL1 WILD-TYPE" "RTEL1 WILD-TYPE"   "RTEL1 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"RTEL1 WILD-TYPE" "RTEL1 WILD-TYPE" "RTEL1 WILD-TYPE" "RTEL1 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"RTEL1 WILD-TYPE" "RTEL1 WILD-TYPE" "RTEL1 WILD-TYPE" "RTEL1 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"RTEL1 WILD-TYPE"   "RTEL1 MUTATED" "RTEL1 WILD-TYPE"   "RTEL1 MUTATED" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"RTEL1 WILD-TYPE" "RTEL1 WILD-TYPE" "RTEL1 WILD-TYPE" "RTEL1 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"RTEL1 WILD-TYPE" "RTEL1 WILD-TYPE" "RTEL1 WILD-TYPE" "RTEL1 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"RTEL1 WILD-TYPE" "RTEL1 WILD-TYPE" "RTEL1 WILD-TYPE" "RTEL1 WILD-TYPE" 
     TCGA-US-A77J 
"RTEL1 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"RTEL1 WILD-TYPE" "RTEL1 WILD-TYPE" "RTEL1 WILD-TYPE" "RTEL1 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"RTEL1 WILD-TYPE" "RTEL1 WILD-TYPE" "RTEL1 WILD-TYPE" "RTEL1 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"RTEL1 WILD-TYPE" "RTEL1 WILD-TYPE" "RTEL1 WILD-TYPE" "RTEL1 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"RTEL1 WILD-TYPE" "RTEL1 WILD-TYPE" "RTEL1 WILD-TYPE" "RTEL1 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"RTEL1 WILD-TYPE" "RTEL1 WILD-TYPE" "RTEL1 WILD-TYPE" "RTEL1 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"RTEL1 WILD-TYPE" "RTEL1 WILD-TYPE" "RTEL1 WILD-TYPE" "RTEL1 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"RTEL1 WILD-TYPE" "RTEL1 WILD-TYPE" "RTEL1 WILD-TYPE" "RTEL1 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
  "RTEL1 MUTATED"   "RTEL1 MUTATED" "RTEL1 WILD-TYPE" "RTEL1 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"RTEL1 WILD-TYPE" "RTEL1 WILD-TYPE" "RTEL1 WILD-TYPE" "RTEL1 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"RTEL1 WILD-TYPE" "RTEL1 WILD-TYPE" "RTEL1 WILD-TYPE" "RTEL1 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"RTEL1 WILD-TYPE" "RTEL1 WILD-TYPE" "RTEL1 WILD-TYPE"   "RTEL1 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"RTEL1 WILD-TYPE" "RTEL1 WILD-TYPE" "RTEL1 WILD-TYPE" "RTEL1 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"RTEL1 WILD-TYPE" "RTEL1 WILD-TYPE" "RTEL1 WILD-TYPE" "RTEL1 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"RTEL1 WILD-TYPE"   "RTEL1 MUTATED" "RTEL1 WILD-TYPE"   "RTEL1 MUTATED" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"RTEL1 WILD-TYPE" "RTEL1 WILD-TYPE" "RTEL1 WILD-TYPE" "RTEL1 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"RTEL1 WILD-TYPE" "RTEL1 WILD-TYPE" "RTEL1 WILD-TYPE" "RTEL1 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"RTEL1 WILD-TYPE" "RTEL1 WILD-TYPE" "RTEL1 WILD-TYPE" "RTEL1 WILD-TYPE" 
     TCGA-US-A77J 
"RTEL1 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"RTEL1 WILD-TYPE" "RTEL1 WILD-TYPE" "RTEL1 WILD-TYPE" "RTEL1 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"RTEL1 WILD-TYPE" "RTEL1 WILD-TYPE" "RTEL1 WILD-TYPE" "RTEL1 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"RTEL1 WILD-TYPE" "RTEL1 WILD-TYPE" "RTEL1 WILD-TYPE" "RTEL1 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"RTEL1 WILD-TYPE" "RTEL1 WILD-TYPE" "RTEL1 WILD-TYPE" "RTEL1 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"RTEL1 WILD-TYPE" "RTEL1 WILD-TYPE" "RTEL1 WILD-TYPE" "RTEL1 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"RTEL1 WILD-TYPE" "RTEL1 WILD-TYPE" "RTEL1 WILD-TYPE" "RTEL1 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"RTEL1 WILD-TYPE" "RTEL1 WILD-TYPE" "RTEL1 WILD-TYPE" "RTEL1 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
  "RTEL1 MUTATED"   "RTEL1 MUTATED" "RTEL1 WILD-TYPE" "RTEL1 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"RTEL1 WILD-TYPE" "RTEL1 WILD-TYPE" "RTEL1 WILD-TYPE" "RTEL1 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"RTEL1 WILD-TYPE" "RTEL1 WILD-TYPE" "RTEL1 WILD-TYPE" "RTEL1 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"RTEL1 WILD-TYPE" "RTEL1 WILD-TYPE" "RTEL1 WILD-TYPE"   "RTEL1 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"RTEL1 WILD-TYPE" "RTEL1 WILD-TYPE" "RTEL1 WILD-TYPE" "RTEL1 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"RTEL1 WILD-TYPE" "RTEL1 WILD-TYPE" "RTEL1 WILD-TYPE" "RTEL1 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"RTEL1 WILD-TYPE"   "RTEL1 MUTATED" "RTEL1 WILD-TYPE"   "RTEL1 MUTATED" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"RTEL1 WILD-TYPE" "RTEL1 WILD-TYPE" "RTEL1 WILD-TYPE" "RTEL1 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"RTEL1 WILD-TYPE" "RTEL1 WILD-TYPE" "RTEL1 WILD-TYPE" "RTEL1 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"RTEL1 WILD-TYPE" "RTEL1 WILD-TYPE" "RTEL1 WILD-TYPE" "RTEL1 WILD-TYPE" 
     TCGA-US-A77J 
"RTEL1 WILD-TYPE" 
[1] "hr=" "1.1"
D342V2, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  RTEL1 MUTATED          0        0         0         6         0        0
  RTEL1 WILD-TYPE        1        4        11        45         2        3
D342V3, multiclass
                 vv
clus              T1+T2 T3+T4
  RTEL1 MUTATED       0     6
  RTEL1 WILD-TYPE     6    60
D342V4, multiclass
       clus
vv      RTEL1 MUTATED RTEL1 WILD-TYPE
  T1+T2             0               6
  T3+T4             6              60
D342V5, binary
                 cls
clus               0  1
  RTEL1 MUTATED    0  6
  RTEL1 WILD-TYPE 17 48
[1] "tbl2"
                 cls
clus              [,1] [,2]
  RTEL1 MUTATED      0    6
  RTEL1 WILD-TYPE   17   48
   clus
vv  RTEL1 MUTATED RTEL1 WILD-TYPE
  0             0              17
  1             6              48
                 vv
clus              M0 M1 MX
  RTEL1 MUTATED    3  0  3
  RTEL1 WILD-TYPE 36  3 27
D342V6, multiclass
    clus
vv   RTEL1 MUTATED RTEL1 WILD-TYPE
  M0             3              36
  M1             0               3
  MX             3              27
D342V7, binary
                 cls
clus               0  1
  RTEL1 MUTATED    3  3
  RTEL1 WILD-TYPE 33 33
[1] "tbl2"
                 cls
clus              [,1] [,2]
  RTEL1 MUTATED      3    3
  RTEL1 WILD-TYPE   33   33
        clus
vv       RTEL1 MUTATED RTEL1 WILD-TYPE
  FEMALE             3              33
  MALE               3              33
                 vv
clus              PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  RTEL1 MUTATED                                     6
  RTEL1 WILD-TYPE                                  59
                 vv
clus              PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  RTEL1 MUTATED                                       0
  RTEL1 WILD-TYPE                                     4
                 vv
clus              PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  RTEL1 MUTATED                                                  0
  RTEL1 WILD-TYPE                                                2
D342V8, multiclass
                                                  clus
vv                                                 RTEL1 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                          6
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                        0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA             0
                                                  clus
vv                                                 RTEL1 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                           59
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                          4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA               2
D342V9, continuous
[1] "Remove cluster labels:" "RTEL1 MUTATED"         
clus
  RTEL1 MUTATED RTEL1 WILD-TYPE 
              2              20 
     TCGA-F2-6880      TCGA-FB-A4P5      TCGA-FB-A4P6      TCGA-FB-A5VM 
"RTEL1 WILD-TYPE" "RTEL1 WILD-TYPE" "RTEL1 WILD-TYPE" "RTEL1 WILD-TYPE" 
     TCGA-FB-A78T      TCGA-FB-A7DR      TCGA-H6-8124      TCGA-H6-A45N 
"RTEL1 WILD-TYPE" "RTEL1 WILD-TYPE" "RTEL1 WILD-TYPE" "RTEL1 WILD-TYPE" 
     TCGA-H8-A6C1      TCGA-IB-7644      TCGA-IB-7649      TCGA-IB-7885 
"RTEL1 WILD-TYPE" "RTEL1 WILD-TYPE" "RTEL1 WILD-TYPE" "RTEL1 WILD-TYPE" 
     TCGA-IB-7886      TCGA-IB-7887      TCGA-IB-7891      TCGA-IB-8126 
"RTEL1 WILD-TYPE" "RTEL1 WILD-TYPE" "RTEL1 WILD-TYPE" "RTEL1 WILD-TYPE" 
     TCGA-IB-A5SS      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"RTEL1 WILD-TYPE" "RTEL1 WILD-TYPE" "RTEL1 WILD-TYPE" "RTEL1 WILD-TYPE" 
D342V10, continuous
[1] "Remove cluster labels:" "RTEL1 MUTATED"         
clus
  RTEL1 MUTATED RTEL1 WILD-TYPE 
              2              17 
     TCGA-FB-A4P5      TCGA-FB-A4P6      TCGA-FB-A5VM      TCGA-FB-A78T 
"RTEL1 WILD-TYPE" "RTEL1 WILD-TYPE" "RTEL1 WILD-TYPE" "RTEL1 WILD-TYPE" 
     TCGA-FB-A7DR      TCGA-H6-8124      TCGA-H8-A6C1      TCGA-IB-7644 
"RTEL1 WILD-TYPE" "RTEL1 WILD-TYPE" "RTEL1 WILD-TYPE" "RTEL1 WILD-TYPE" 
     TCGA-IB-7649      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7891 
"RTEL1 WILD-TYPE" "RTEL1 WILD-TYPE" "RTEL1 WILD-TYPE" "RTEL1 WILD-TYPE" 
     TCGA-IB-8126      TCGA-IB-A5SS      TCGA-IB-A6UG      TCGA-LB-A7SX 
"RTEL1 WILD-TYPE" "RTEL1 WILD-TYPE" "RTEL1 WILD-TYPE" "RTEL1 WILD-TYPE" 
     TCGA-OE-A75W 
"RTEL1 WILD-TYPE" 
                 vv
clus              R0 R1 RX
  RTEL1 MUTATED    3  3  0
  RTEL1 WILD-TYPE 39 21  2
D342V11, multiclass
    clus
vv   RTEL1 MUTATED RTEL1 WILD-TYPE
  R0             3              39
  R1             3              21
  RX             0               2
D342V12, continuous

Clustering(343) Variable = BCL9L MUTATION ANALYSIS
D343V1, survival
                 sevent
clus2              0  1
  BCL9L MUTATED    1  4
  BCL9L WILD-TYPE 39 25
  BCL9L MUTATED BCL9L WILD-TYPE 
              5              64 
  BCL9L MUTATED BCL9L WILD-TYPE 
              4              25 
$`BCL9L MUTATED`
TCGA-H6-8124 TCGA-H6-A45N TCGA-IB-7644 TCGA-IB-7651 TCGA-IB-7897 
       12.89         7.66        11.41        19.82        15.98 

$`BCL9L WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P5 TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR 
        0.13        11.93        12.66         2.47         0.03         5.46 
TCGA-FZ-5920 TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H8-A6C1 TCGA-HZ-7289 TCGA-HZ-7918 
        2.01        36.20        20.81        13.02         7.89         0.92 
TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 
        0.66         0.13         0.26        12.13        11.87         0.26 
TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 
        0.62         0.79         0.69         3.95         0.92         0.53 
TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK 
        0.16         2.99         0.76         0.95         6.38         1.51 
TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7652 TCGA-IB-7885 
       49.38         4.77        21.90        15.35        15.65        27.98 
TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 
        4.04         3.62        43.79        15.81        19.66        16.04 
TCGA-IB-7893 TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ 
        3.85         0.56        17.16        10.82         9.86         7.20 
TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W TCGA-PZ-A5RE 
       15.12         0.26         1.35         4.18         3.62         8.12 
TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
       13.68        16.80        14.14        18.67 

  BCL9L MUTATED BCL9L WILD-TYPE 
           7.66            0.03 
  BCL9L MUTATED BCL9L WILD-TYPE 
          19.82           49.38 
  BCL9L MUTATED BCL9L WILD-TYPE 
          12.89            6.74 
[1] "7.7 - 19.8 (12.9)" "0.0 - 49.4 (6.7)" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"BCL9L WILD-TYPE" "BCL9L WILD-TYPE" "BCL9L WILD-TYPE" "BCL9L WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"BCL9L WILD-TYPE" "BCL9L WILD-TYPE" "BCL9L WILD-TYPE" "BCL9L WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"BCL9L WILD-TYPE" "BCL9L WILD-TYPE" "BCL9L WILD-TYPE" "BCL9L WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"BCL9L WILD-TYPE" "BCL9L WILD-TYPE" "BCL9L WILD-TYPE"   "BCL9L MUTATED" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
  "BCL9L MUTATED" "BCL9L WILD-TYPE" "BCL9L WILD-TYPE" "BCL9L WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"BCL9L WILD-TYPE" "BCL9L WILD-TYPE" "BCL9L WILD-TYPE" "BCL9L WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"BCL9L WILD-TYPE" "BCL9L WILD-TYPE" "BCL9L WILD-TYPE" "BCL9L WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"BCL9L WILD-TYPE" "BCL9L WILD-TYPE" "BCL9L WILD-TYPE" "BCL9L WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"BCL9L WILD-TYPE" "BCL9L WILD-TYPE" "BCL9L WILD-TYPE" "BCL9L WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"BCL9L WILD-TYPE" "BCL9L WILD-TYPE"   "BCL9L MUTATED" "BCL9L WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"BCL9L WILD-TYPE" "BCL9L WILD-TYPE" "BCL9L WILD-TYPE"   "BCL9L MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"BCL9L WILD-TYPE" "BCL9L WILD-TYPE" "BCL9L WILD-TYPE" "BCL9L WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"BCL9L WILD-TYPE" "BCL9L WILD-TYPE" "BCL9L WILD-TYPE" "BCL9L WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"BCL9L WILD-TYPE"   "BCL9L MUTATED" "BCL9L WILD-TYPE" "BCL9L WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"BCL9L WILD-TYPE" "BCL9L WILD-TYPE" "BCL9L WILD-TYPE" "BCL9L WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"BCL9L WILD-TYPE" "BCL9L WILD-TYPE" "BCL9L WILD-TYPE" "BCL9L WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"BCL9L WILD-TYPE" "BCL9L WILD-TYPE" "BCL9L WILD-TYPE" "BCL9L WILD-TYPE" 
     TCGA-US-A77J 
"BCL9L WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"BCL9L WILD-TYPE" "BCL9L WILD-TYPE" "BCL9L WILD-TYPE" "BCL9L WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"BCL9L WILD-TYPE" "BCL9L WILD-TYPE" "BCL9L WILD-TYPE" "BCL9L WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"BCL9L WILD-TYPE" "BCL9L WILD-TYPE" "BCL9L WILD-TYPE" "BCL9L WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"BCL9L WILD-TYPE" "BCL9L WILD-TYPE" "BCL9L WILD-TYPE"   "BCL9L MUTATED" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
  "BCL9L MUTATED" "BCL9L WILD-TYPE" "BCL9L WILD-TYPE" "BCL9L WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"BCL9L WILD-TYPE" "BCL9L WILD-TYPE" "BCL9L WILD-TYPE" "BCL9L WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"BCL9L WILD-TYPE" "BCL9L WILD-TYPE" "BCL9L WILD-TYPE" "BCL9L WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"BCL9L WILD-TYPE" "BCL9L WILD-TYPE" "BCL9L WILD-TYPE" "BCL9L WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"BCL9L WILD-TYPE" "BCL9L WILD-TYPE" "BCL9L WILD-TYPE" "BCL9L WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"BCL9L WILD-TYPE" "BCL9L WILD-TYPE"   "BCL9L MUTATED" "BCL9L WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"BCL9L WILD-TYPE" "BCL9L WILD-TYPE" "BCL9L WILD-TYPE"   "BCL9L MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"BCL9L WILD-TYPE" "BCL9L WILD-TYPE" "BCL9L WILD-TYPE" "BCL9L WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"BCL9L WILD-TYPE" "BCL9L WILD-TYPE" "BCL9L WILD-TYPE" "BCL9L WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"BCL9L WILD-TYPE"   "BCL9L MUTATED" "BCL9L WILD-TYPE" "BCL9L WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"BCL9L WILD-TYPE" "BCL9L WILD-TYPE" "BCL9L WILD-TYPE" "BCL9L WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"BCL9L WILD-TYPE" "BCL9L WILD-TYPE" "BCL9L WILD-TYPE" "BCL9L WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"BCL9L WILD-TYPE" "BCL9L WILD-TYPE" "BCL9L WILD-TYPE" "BCL9L WILD-TYPE" 
     TCGA-US-A77J 
"BCL9L WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"BCL9L WILD-TYPE" "BCL9L WILD-TYPE" "BCL9L WILD-TYPE" "BCL9L WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"BCL9L WILD-TYPE" "BCL9L WILD-TYPE" "BCL9L WILD-TYPE" "BCL9L WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"BCL9L WILD-TYPE" "BCL9L WILD-TYPE" "BCL9L WILD-TYPE" "BCL9L WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"BCL9L WILD-TYPE" "BCL9L WILD-TYPE" "BCL9L WILD-TYPE"   "BCL9L MUTATED" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
  "BCL9L MUTATED" "BCL9L WILD-TYPE" "BCL9L WILD-TYPE" "BCL9L WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"BCL9L WILD-TYPE" "BCL9L WILD-TYPE" "BCL9L WILD-TYPE" "BCL9L WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"BCL9L WILD-TYPE" "BCL9L WILD-TYPE" "BCL9L WILD-TYPE" "BCL9L WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"BCL9L WILD-TYPE" "BCL9L WILD-TYPE" "BCL9L WILD-TYPE" "BCL9L WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"BCL9L WILD-TYPE" "BCL9L WILD-TYPE" "BCL9L WILD-TYPE" "BCL9L WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"BCL9L WILD-TYPE" "BCL9L WILD-TYPE"   "BCL9L MUTATED" "BCL9L WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"BCL9L WILD-TYPE" "BCL9L WILD-TYPE" "BCL9L WILD-TYPE"   "BCL9L MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"BCL9L WILD-TYPE" "BCL9L WILD-TYPE" "BCL9L WILD-TYPE" "BCL9L WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"BCL9L WILD-TYPE" "BCL9L WILD-TYPE" "BCL9L WILD-TYPE" "BCL9L WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"BCL9L WILD-TYPE"   "BCL9L MUTATED" "BCL9L WILD-TYPE" "BCL9L WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"BCL9L WILD-TYPE" "BCL9L WILD-TYPE" "BCL9L WILD-TYPE" "BCL9L WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"BCL9L WILD-TYPE" "BCL9L WILD-TYPE" "BCL9L WILD-TYPE" "BCL9L WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"BCL9L WILD-TYPE" "BCL9L WILD-TYPE" "BCL9L WILD-TYPE" "BCL9L WILD-TYPE" 
     TCGA-US-A77J 
"BCL9L WILD-TYPE" 
[1] "hr=" "1.5"
D343V2, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  BCL9L MUTATED          0        0         0         4         0        1
  BCL9L WILD-TYPE        1        4        11        47         2        2
D343V3, multiclass
                 vv
clus              T1+T2 T3+T4
  BCL9L MUTATED       0     5
  BCL9L WILD-TYPE     6    61
D343V4, multiclass
       clus
vv      BCL9L MUTATED BCL9L WILD-TYPE
  T1+T2             0               6
  T3+T4             5              61
D343V5, binary
                 cls
clus               0  1
  BCL9L MUTATED    0  5
  BCL9L WILD-TYPE 17 49
[1] "tbl2"
                 cls
clus              [,1] [,2]
  BCL9L MUTATED      0    5
  BCL9L WILD-TYPE   17   49
   clus
vv  BCL9L MUTATED BCL9L WILD-TYPE
  0             0              17
  1             5              49
                 vv
clus              M0 M1 MX
  BCL9L MUTATED    3  1  1
  BCL9L WILD-TYPE 36  2 29
D343V6, multiclass
    clus
vv   BCL9L MUTATED BCL9L WILD-TYPE
  M0             3              36
  M1             1               2
  MX             1              29
D343V7, binary
                 cls
clus               0  1
  BCL9L MUTATED    5  0
  BCL9L WILD-TYPE 31 36
[1] "tbl2"
                 cls
clus              [,1] [,2]
  BCL9L MUTATED      5    0
  BCL9L WILD-TYPE   31   36
        clus
vv       BCL9L MUTATED BCL9L WILD-TYPE
  FEMALE             5              31
  MALE               0              36
                 vv
clus              PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  BCL9L MUTATED                                     4
  BCL9L WILD-TYPE                                  61
                 vv
clus              PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  BCL9L MUTATED                                       1
  BCL9L WILD-TYPE                                     3
                 vv
clus              PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  BCL9L MUTATED                                                  0
  BCL9L WILD-TYPE                                                2
D343V8, multiclass
                                                  clus
vv                                                 BCL9L MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                          4
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                        1
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA             0
                                                  clus
vv                                                 BCL9L WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                           61
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                          3
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA               2
D343V9, continuous
D343V10, continuous
                 vv
clus              R0 R1 RX
  BCL9L MUTATED    3  1  0
  BCL9L WILD-TYPE 39 23  2
D343V11, multiclass
    clus
vv   BCL9L MUTATED BCL9L WILD-TYPE
  R0             3              39
  R1             1              23
  RX             0               2
D343V12, continuous

Clustering(344) Variable = DDX5 MUTATION ANALYSIS
D344V1, survival
                sevent
clus2             0  1
  DDX5 MUTATED    2  2
  DDX5 WILD-TYPE 38 27
  DDX5 MUTATED DDX5 WILD-TYPE 
             4             65 
  DDX5 MUTATED DDX5 WILD-TYPE 
             2             27 
$`DDX5 MUTATED`
TCGA-H6-8124 TCGA-IB-7651 TCGA-IB-7888 TCGA-IB-8126 
       12.89        19.82        43.79         0.56 

$`DDX5 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P5 TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR 
        0.13        11.93        12.66         2.47         0.03         5.46 
TCGA-FZ-5920 TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7289 
        2.01        36.20        20.81         7.66        13.02         7.89 
TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 
        0.92         0.66         0.13         0.26        12.13        11.87 
TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 
        0.26         0.62         0.79         0.69         3.95         0.92 
TCGA-HZ-8317 TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH 
        0.53         0.16         2.99         0.76         0.95         6.38 
TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 
        1.51        11.41        49.38         4.77        21.90        15.35 
TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7889 TCGA-IB-7890 
       15.65        27.98         4.04         3.62        15.81        19.66 
TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP 
       16.04         3.85        15.98        17.16        10.82         9.86 
TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W 
        7.20        15.12         0.26         1.35         4.18         3.62 
TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
        8.12        13.68        16.80        14.14        18.67 

  DDX5 MUTATED DDX5 WILD-TYPE 
          0.56           0.03 
  DDX5 MUTATED DDX5 WILD-TYPE 
         43.79          49.38 
  DDX5 MUTATED DDX5 WILD-TYPE 
        16.355          7.200 
[1] "0.6 - 43.8 (16.4)" "0.0 - 49.4 (7.2)" 
    TCGA-F2-6879     TCGA-F2-6880     TCGA-F2-7273     TCGA-F2-7276 
"DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" 
    TCGA-F2-A44G     TCGA-F2-A44H     TCGA-FB-A4P5     TCGA-FB-A4P6 
"DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" 
    TCGA-FB-A545     TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-FB-A7DR 
"DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" 
    TCGA-FZ-5920     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-H6-8124 
"DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE"   "DDX5 MUTATED" 
    TCGA-H6-A45N     TCGA-H8-A6C1     TCGA-HZ-7289     TCGA-HZ-7918 
"DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" 
    TCGA-HZ-7919     TCGA-HZ-7922     TCGA-HZ-7923     TCGA-HZ-7924 
"DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" 
    TCGA-HZ-7925     TCGA-HZ-7926     TCGA-HZ-8001     TCGA-HZ-8002 
"DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" 
    TCGA-HZ-8003     TCGA-HZ-8005     TCGA-HZ-8315     TCGA-HZ-8317 
"DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" 
    TCGA-HZ-8636     TCGA-HZ-8638     TCGA-HZ-A49G     TCGA-HZ-A49H 
"DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" 
    TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-IB-7644     TCGA-IB-7645 
"DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" 
    TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7651 
"DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE"   "DDX5 MUTATED" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887 
"DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" 
    TCGA-IB-7888     TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891 
  "DDX5 MUTATED" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" 
    TCGA-IB-7893     TCGA-IB-7897     TCGA-IB-8126     TCGA-IB-8127 
"DDX5 WILD-TYPE" "DDX5 WILD-TYPE"   "DDX5 MUTATED" "DDX5 WILD-TYPE" 
    TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS 
"DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" 
    TCGA-IB-A5ST     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
"DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" 
    TCGA-PZ-A5RE     TCGA-Q3-A5QY     TCGA-US-A779     TCGA-US-A77E 
"DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" 
    TCGA-US-A77J 
"DDX5 WILD-TYPE" 
    TCGA-F2-6879     TCGA-F2-6880     TCGA-F2-7273     TCGA-F2-7276 
"DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" 
    TCGA-F2-A44G     TCGA-F2-A44H     TCGA-FB-A4P5     TCGA-FB-A4P6 
"DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" 
    TCGA-FB-A545     TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-FB-A7DR 
"DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" 
    TCGA-FZ-5920     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-H6-8124 
"DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE"   "DDX5 MUTATED" 
    TCGA-H6-A45N     TCGA-H8-A6C1     TCGA-HZ-7289     TCGA-HZ-7918 
"DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" 
    TCGA-HZ-7919     TCGA-HZ-7922     TCGA-HZ-7923     TCGA-HZ-7924 
"DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" 
    TCGA-HZ-7925     TCGA-HZ-7926     TCGA-HZ-8001     TCGA-HZ-8002 
"DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" 
    TCGA-HZ-8003     TCGA-HZ-8005     TCGA-HZ-8315     TCGA-HZ-8317 
"DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" 
    TCGA-HZ-8636     TCGA-HZ-8638     TCGA-HZ-A49G     TCGA-HZ-A49H 
"DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" 
    TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-IB-7644     TCGA-IB-7645 
"DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" 
    TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7651 
"DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE"   "DDX5 MUTATED" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887 
"DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" 
    TCGA-IB-7888     TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891 
  "DDX5 MUTATED" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" 
    TCGA-IB-7893     TCGA-IB-7897     TCGA-IB-8126     TCGA-IB-8127 
"DDX5 WILD-TYPE" "DDX5 WILD-TYPE"   "DDX5 MUTATED" "DDX5 WILD-TYPE" 
    TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS 
"DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" 
    TCGA-IB-A5ST     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
"DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" 
    TCGA-PZ-A5RE     TCGA-Q3-A5QY     TCGA-US-A779     TCGA-US-A77E 
"DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" 
    TCGA-US-A77J 
"DDX5 WILD-TYPE" 
    TCGA-F2-6879     TCGA-F2-6880     TCGA-F2-7273     TCGA-F2-7276 
"DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" 
    TCGA-F2-A44G     TCGA-F2-A44H     TCGA-FB-A4P5     TCGA-FB-A4P6 
"DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" 
    TCGA-FB-A545     TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-FB-A7DR 
"DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" 
    TCGA-FZ-5920     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-H6-8124 
"DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE"   "DDX5 MUTATED" 
    TCGA-H6-A45N     TCGA-H8-A6C1     TCGA-HZ-7289     TCGA-HZ-7918 
"DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" 
    TCGA-HZ-7919     TCGA-HZ-7922     TCGA-HZ-7923     TCGA-HZ-7924 
"DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" 
    TCGA-HZ-7925     TCGA-HZ-7926     TCGA-HZ-8001     TCGA-HZ-8002 
"DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" 
    TCGA-HZ-8003     TCGA-HZ-8005     TCGA-HZ-8315     TCGA-HZ-8317 
"DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" 
    TCGA-HZ-8636     TCGA-HZ-8638     TCGA-HZ-A49G     TCGA-HZ-A49H 
"DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" 
    TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-IB-7644     TCGA-IB-7645 
"DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" 
    TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7651 
"DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE"   "DDX5 MUTATED" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887 
"DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" 
    TCGA-IB-7888     TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891 
  "DDX5 MUTATED" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" 
    TCGA-IB-7893     TCGA-IB-7897     TCGA-IB-8126     TCGA-IB-8127 
"DDX5 WILD-TYPE" "DDX5 WILD-TYPE"   "DDX5 MUTATED" "DDX5 WILD-TYPE" 
    TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS 
"DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" 
    TCGA-IB-A5ST     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
"DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" 
    TCGA-PZ-A5RE     TCGA-Q3-A5QY     TCGA-US-A779     TCGA-US-A77E 
"DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" "DDX5 WILD-TYPE" 
    TCGA-US-A77J 
"DDX5 WILD-TYPE" 
[1] "hr=" "2.2"
D344V2, continuous
                vv
clus             STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  DDX5 MUTATED          0        0         1         2         1        0
  DDX5 WILD-TYPE        1        4        10        49         1        3
D344V3, multiclass
                vv
clus             T1+T2 T3+T4
  DDX5 MUTATED       0     4
  DDX5 WILD-TYPE     6    62
D344V4, multiclass
       clus
vv      DDX5 MUTATED DDX5 WILD-TYPE
  T1+T2            0              6
  T3+T4            4             62
D344V5, binary
                cls
clus              0  1
  DDX5 MUTATED    1  3
  DDX5 WILD-TYPE 16 51
[1] "tbl2"
                cls
clus             [,1] [,2]
  DDX5 MUTATED      1    3
  DDX5 WILD-TYPE   16   51
   clus
vv  DDX5 MUTATED DDX5 WILD-TYPE
  0            1             16
  1            3             51
                vv
clus             M0 M1 MX
  DDX5 MUTATED    4  0  0
  DDX5 WILD-TYPE 35  3 30
D344V6, multiclass
    clus
vv   DDX5 MUTATED DDX5 WILD-TYPE
  M0            4             35
  M1            0              3
  MX            0             30
D344V7, binary
                cls
clus              0  1
  DDX5 MUTATED    4  0
  DDX5 WILD-TYPE 32 36
[1] "tbl2"
                cls
clus             [,1] [,2]
  DDX5 MUTATED      4    0
  DDX5 WILD-TYPE   32   36
        clus
vv       DDX5 MUTATED DDX5 WILD-TYPE
  FEMALE            4             32
  MALE              0             36
                vv
clus             PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  DDX5 MUTATED                                     4
  DDX5 WILD-TYPE                                  61
                vv
clus             PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  DDX5 MUTATED                                       0
  DDX5 WILD-TYPE                                     4
                vv
clus             PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  DDX5 MUTATED                                                  0
  DDX5 WILD-TYPE                                                2
D344V8, multiclass
                                                  clus
vv                                                 DDX5 MUTATED DDX5 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                         4             61
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                       0              4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA            0              2
D344V9, continuous
D344V10, continuous
                vv
clus             R0 R1 RX
  DDX5 MUTATED    3  1  0
  DDX5 WILD-TYPE 39 23  2
D344V11, multiclass
    clus
vv   DDX5 MUTATED DDX5 WILD-TYPE
  R0            3             39
  R1            1             23
  RX            0              2
D344V12, continuous

Clustering(345) Variable = PCDHB2 MUTATION ANALYSIS
D345V1, survival
                  sevent
clus2               0  1
  PCDHB2 MUTATED    3  2
  PCDHB2 WILD-TYPE 37 27
  PCDHB2 MUTATED PCDHB2 WILD-TYPE 
               5               64 
  PCDHB2 MUTATED PCDHB2 WILD-TYPE 
               2               27 
$`PCDHB2 MUTATED`
TCGA-H6-8124 TCGA-HZ-8002 TCGA-HZ-A49G TCGA-IB-7651 TCGA-IB-A5SQ 
       12.89         0.79         0.76        19.82         7.20 

$`PCDHB2 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P5 TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR 
        0.13        11.93        12.66         2.47         0.03         5.46 
TCGA-FZ-5920 TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7289 
        2.01        36.20        20.81         7.66        13.02         7.89 
TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 
        0.92         0.66         0.13         0.26        12.13        11.87 
TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 
        0.26         0.62         0.69         3.95         0.92         0.53 
TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 
        0.16         2.99         0.95         6.38         1.51        11.41 
TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7652 TCGA-IB-7885 
       49.38         4.77        21.90        15.35        15.65        27.98 
TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 
        4.04         3.62        43.79        15.81        19.66        16.04 
TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP 
        3.85        15.98         0.56        17.16        10.82         9.86 
TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W TCGA-PZ-A5RE 
       15.12         0.26         1.35         4.18         3.62         8.12 
TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
       13.68        16.80        14.14        18.67 

  PCDHB2 MUTATED PCDHB2 WILD-TYPE 
            0.76             0.03 
  PCDHB2 MUTATED PCDHB2 WILD-TYPE 
           19.82            49.38 
  PCDHB2 MUTATED PCDHB2 WILD-TYPE 
           7.200            7.775 
[1] "0.8 - 19.8 (7.2)" "0.0 - 49.4 (7.8)"
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE"   "PCDHB2 MUTATED" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE"   "PCDHB2 MUTATED" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE"   "PCDHB2 MUTATED" "PCDHB2 WILD-TYPE" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE"   "PCDHB2 MUTATED" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE"   "PCDHB2 MUTATED" "PCDHB2 WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-US-A77J 
"PCDHB2 WILD-TYPE" 
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE"   "PCDHB2 MUTATED" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE"   "PCDHB2 MUTATED" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE"   "PCDHB2 MUTATED" "PCDHB2 WILD-TYPE" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE"   "PCDHB2 MUTATED" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE"   "PCDHB2 MUTATED" "PCDHB2 WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-US-A77J 
"PCDHB2 WILD-TYPE" 
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE"   "PCDHB2 MUTATED" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE"   "PCDHB2 MUTATED" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE"   "PCDHB2 MUTATED" "PCDHB2 WILD-TYPE" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE"   "PCDHB2 MUTATED" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE"   "PCDHB2 MUTATED" "PCDHB2 WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-US-A77J 
"PCDHB2 WILD-TYPE" 
[1] "hr=" "1.1"
D345V2, continuous
                  vv
clus               STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  PCDHB2 MUTATED          0        1         0         4         0        0
  PCDHB2 WILD-TYPE        1        3        11        47         2        3
D345V3, multiclass
                  vv
clus               T1+T2 T3+T4
  PCDHB2 MUTATED       2     3
  PCDHB2 WILD-TYPE     4    63
D345V4, multiclass
       clus
vv      PCDHB2 MUTATED PCDHB2 WILD-TYPE
  T1+T2              2                4
  T3+T4              3               63
D345V5, binary
                  cls
clus                0  1
  PCDHB2 MUTATED    1  4
  PCDHB2 WILD-TYPE 16 50
[1] "tbl2"
                  cls
clus               [,1] [,2]
  PCDHB2 MUTATED      1    4
  PCDHB2 WILD-TYPE   16   50
   clus
vv  PCDHB2 MUTATED PCDHB2 WILD-TYPE
  0              1               16
  1              4               50
                  vv
clus               M0 M1 MX
  PCDHB2 MUTATED    3  0  2
  PCDHB2 WILD-TYPE 36  3 28
D345V6, multiclass
    clus
vv   PCDHB2 MUTATED PCDHB2 WILD-TYPE
  M0              3               36
  M1              0                3
  MX              2               28
D345V7, binary
                  cls
clus                0  1
  PCDHB2 MUTATED    4  1
  PCDHB2 WILD-TYPE 32 35
[1] "tbl2"
                  cls
clus               [,1] [,2]
  PCDHB2 MUTATED      4    1
  PCDHB2 WILD-TYPE   32   35
        clus
vv       PCDHB2 MUTATED PCDHB2 WILD-TYPE
  FEMALE              4               32
  MALE                1               35
                  vv
clus               PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  PCDHB2 MUTATED                                     5
  PCDHB2 WILD-TYPE                                  60
                  vv
clus               PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  PCDHB2 MUTATED                                       0
  PCDHB2 WILD-TYPE                                     4
                  vv
clus               PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  PCDHB2 MUTATED                                                  0
  PCDHB2 WILD-TYPE                                                2
D345V8, multiclass
                                                  clus
vv                                                 PCDHB2 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                           5
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                         0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA              0
                                                  clus
vv                                                 PCDHB2 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                            60
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                           4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                2
D345V9, continuous
[1] "Remove cluster labels:" "PCDHB2 MUTATED"        
clus
  PCDHB2 MUTATED PCDHB2 WILD-TYPE 
               2               20 
      TCGA-F2-6880       TCGA-FB-A4P5       TCGA-FB-A4P6       TCGA-FB-A5VM 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-FB-A78T       TCGA-FB-A7DR       TCGA-H6-A45N       TCGA-H8-A6C1 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-IB-7644       TCGA-IB-7649       TCGA-IB-7885       TCGA-IB-7886 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-IB-7887       TCGA-IB-7891       TCGA-IB-8126       TCGA-IB-8127 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-IB-A5SS       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
D345V10, continuous
[1] "Remove cluster labels:" "PCDHB2 MUTATED"        
clus
  PCDHB2 MUTATED PCDHB2 WILD-TYPE 
               2               17 
      TCGA-FB-A4P5       TCGA-FB-A4P6       TCGA-FB-A5VM       TCGA-FB-A78T 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-FB-A7DR       TCGA-H8-A6C1       TCGA-IB-7644       TCGA-IB-7649 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7891       TCGA-IB-8126 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-IB-8127       TCGA-IB-A5SS       TCGA-IB-A6UG       TCGA-LB-A7SX 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-OE-A75W 
"PCDHB2 WILD-TYPE" 
                  vv
clus               R0 R1 RX
  PCDHB2 MUTATED    4  1  0
  PCDHB2 WILD-TYPE 38 23  2
D345V11, multiclass
    clus
vv   PCDHB2 MUTATED PCDHB2 WILD-TYPE
  R0              4               38
  R1              1               23
  RX              0                2
D345V12, continuous

Clustering(346) Variable = GBP5 MUTATION ANALYSIS
D346V1, survival
                sevent
clus2             0  1
  GBP5 MUTATED    2  2
  GBP5 WILD-TYPE 38 27
  GBP5 MUTATED GBP5 WILD-TYPE 
             4             65 
  GBP5 MUTATED GBP5 WILD-TYPE 
             2             27 
$`GBP5 MUTATED`
TCGA-F2-7276 TCGA-H6-8124 TCGA-HZ-A49G TCGA-IB-7651 
        7.10        12.89         0.76        19.82 

$`GBP5 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-A44G TCGA-F2-A44H TCGA-FB-A4P5 
       10.98         9.70        11.84         5.03        19.27         0.13 
TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR TCGA-FZ-5920 
       11.93        12.66         2.47         0.03         5.46         2.01 
TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7289 TCGA-HZ-7918 
       36.20        20.81         7.66        13.02         7.89         0.92 
TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 
        0.66         0.13         0.26        12.13        11.87         0.26 
TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 
        0.62         0.79         0.69         3.95         0.92         0.53 
TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 
        0.16         2.99         0.95         6.38         1.51        11.41 
TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7652 TCGA-IB-7885 
       49.38         4.77        21.90        15.35        15.65        27.98 
TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 
        4.04         3.62        43.79        15.81        19.66        16.04 
TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP 
        3.85        15.98         0.56        17.16        10.82         9.86 
TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W 
        7.20        15.12         0.26         1.35         4.18         3.62 
TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
        8.12        13.68        16.80        14.14        18.67 

  GBP5 MUTATED GBP5 WILD-TYPE 
          0.76           0.03 
  GBP5 MUTATED GBP5 WILD-TYPE 
         19.82          49.38 
  GBP5 MUTATED GBP5 WILD-TYPE 
         9.995          7.660 
[1] "0.8 - 19.8 (10.0)" "0.0 - 49.4 (7.7)" 
    TCGA-F2-6879     TCGA-F2-6880     TCGA-F2-7273     TCGA-F2-7276 
"GBP5 WILD-TYPE" "GBP5 WILD-TYPE" "GBP5 WILD-TYPE"   "GBP5 MUTATED" 
    TCGA-F2-A44G     TCGA-F2-A44H     TCGA-FB-A4P5     TCGA-FB-A4P6 
"GBP5 WILD-TYPE" "GBP5 WILD-TYPE" "GBP5 WILD-TYPE" "GBP5 WILD-TYPE" 
    TCGA-FB-A545     TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-FB-A7DR 
"GBP5 WILD-TYPE" "GBP5 WILD-TYPE" "GBP5 WILD-TYPE" "GBP5 WILD-TYPE" 
    TCGA-FZ-5920     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-H6-8124 
"GBP5 WILD-TYPE" "GBP5 WILD-TYPE" "GBP5 WILD-TYPE"   "GBP5 MUTATED" 
    TCGA-H6-A45N     TCGA-H8-A6C1     TCGA-HZ-7289     TCGA-HZ-7918 
"GBP5 WILD-TYPE" "GBP5 WILD-TYPE" "GBP5 WILD-TYPE" "GBP5 WILD-TYPE" 
    TCGA-HZ-7919     TCGA-HZ-7922     TCGA-HZ-7923     TCGA-HZ-7924 
"GBP5 WILD-TYPE" "GBP5 WILD-TYPE" "GBP5 WILD-TYPE" "GBP5 WILD-TYPE" 
    TCGA-HZ-7925     TCGA-HZ-7926     TCGA-HZ-8001     TCGA-HZ-8002 
"GBP5 WILD-TYPE" "GBP5 WILD-TYPE" "GBP5 WILD-TYPE" "GBP5 WILD-TYPE" 
    TCGA-HZ-8003     TCGA-HZ-8005     TCGA-HZ-8315     TCGA-HZ-8317 
"GBP5 WILD-TYPE" "GBP5 WILD-TYPE" "GBP5 WILD-TYPE" "GBP5 WILD-TYPE" 
    TCGA-HZ-8636     TCGA-HZ-8638     TCGA-HZ-A49G     TCGA-HZ-A49H 
"GBP5 WILD-TYPE" "GBP5 WILD-TYPE"   "GBP5 MUTATED" "GBP5 WILD-TYPE" 
    TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-IB-7644     TCGA-IB-7645 
"GBP5 WILD-TYPE" "GBP5 WILD-TYPE" "GBP5 WILD-TYPE" "GBP5 WILD-TYPE" 
    TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7651 
"GBP5 WILD-TYPE" "GBP5 WILD-TYPE" "GBP5 WILD-TYPE"   "GBP5 MUTATED" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887 
"GBP5 WILD-TYPE" "GBP5 WILD-TYPE" "GBP5 WILD-TYPE" "GBP5 WILD-TYPE" 
    TCGA-IB-7888     TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891 
"GBP5 WILD-TYPE" "GBP5 WILD-TYPE" "GBP5 WILD-TYPE" "GBP5 WILD-TYPE" 
    TCGA-IB-7893     TCGA-IB-7897     TCGA-IB-8126     TCGA-IB-8127 
"GBP5 WILD-TYPE" "GBP5 WILD-TYPE" "GBP5 WILD-TYPE" "GBP5 WILD-TYPE" 
    TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS 
"GBP5 WILD-TYPE" "GBP5 WILD-TYPE" "GBP5 WILD-TYPE" "GBP5 WILD-TYPE" 
    TCGA-IB-A5ST     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
"GBP5 WILD-TYPE" "GBP5 WILD-TYPE" "GBP5 WILD-TYPE" "GBP5 WILD-TYPE" 
    TCGA-PZ-A5RE     TCGA-Q3-A5QY     TCGA-US-A779     TCGA-US-A77E 
"GBP5 WILD-TYPE" "GBP5 WILD-TYPE" "GBP5 WILD-TYPE" "GBP5 WILD-TYPE" 
    TCGA-US-A77J 
"GBP5 WILD-TYPE" 
    TCGA-F2-6879     TCGA-F2-6880     TCGA-F2-7273     TCGA-F2-7276 
"GBP5 WILD-TYPE" "GBP5 WILD-TYPE" "GBP5 WILD-TYPE"   "GBP5 MUTATED" 
    TCGA-F2-A44G     TCGA-F2-A44H     TCGA-FB-A4P5     TCGA-FB-A4P6 
"GBP5 WILD-TYPE" "GBP5 WILD-TYPE" "GBP5 WILD-TYPE" "GBP5 WILD-TYPE" 
    TCGA-FB-A545     TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-FB-A7DR 
"GBP5 WILD-TYPE" "GBP5 WILD-TYPE" "GBP5 WILD-TYPE" "GBP5 WILD-TYPE" 
    TCGA-FZ-5920     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-H6-8124 
"GBP5 WILD-TYPE" "GBP5 WILD-TYPE" "GBP5 WILD-TYPE"   "GBP5 MUTATED" 
    TCGA-H6-A45N     TCGA-H8-A6C1     TCGA-HZ-7289     TCGA-HZ-7918 
"GBP5 WILD-TYPE" "GBP5 WILD-TYPE" "GBP5 WILD-TYPE" "GBP5 WILD-TYPE" 
    TCGA-HZ-7919     TCGA-HZ-7922     TCGA-HZ-7923     TCGA-HZ-7924 
"GBP5 WILD-TYPE" "GBP5 WILD-TYPE" "GBP5 WILD-TYPE" "GBP5 WILD-TYPE" 
    TCGA-HZ-7925     TCGA-HZ-7926     TCGA-HZ-8001     TCGA-HZ-8002 
"GBP5 WILD-TYPE" "GBP5 WILD-TYPE" "GBP5 WILD-TYPE" "GBP5 WILD-TYPE" 
    TCGA-HZ-8003     TCGA-HZ-8005     TCGA-HZ-8315     TCGA-HZ-8317 
"GBP5 WILD-TYPE" "GBP5 WILD-TYPE" "GBP5 WILD-TYPE" "GBP5 WILD-TYPE" 
    TCGA-HZ-8636     TCGA-HZ-8638     TCGA-HZ-A49G     TCGA-HZ-A49H 
"GBP5 WILD-TYPE" "GBP5 WILD-TYPE"   "GBP5 MUTATED" "GBP5 WILD-TYPE" 
    TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-IB-7644     TCGA-IB-7645 
"GBP5 WILD-TYPE" "GBP5 WILD-TYPE" "GBP5 WILD-TYPE" "GBP5 WILD-TYPE" 
    TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7651 
"GBP5 WILD-TYPE" "GBP5 WILD-TYPE" "GBP5 WILD-TYPE"   "GBP5 MUTATED" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887 
"GBP5 WILD-TYPE" "GBP5 WILD-TYPE" "GBP5 WILD-TYPE" "GBP5 WILD-TYPE" 
    TCGA-IB-7888     TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891 
"GBP5 WILD-TYPE" "GBP5 WILD-TYPE" "GBP5 WILD-TYPE" "GBP5 WILD-TYPE" 
    TCGA-IB-7893     TCGA-IB-7897     TCGA-IB-8126     TCGA-IB-8127 
"GBP5 WILD-TYPE" "GBP5 WILD-TYPE" "GBP5 WILD-TYPE" "GBP5 WILD-TYPE" 
    TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS 
"GBP5 WILD-TYPE" "GBP5 WILD-TYPE" "GBP5 WILD-TYPE" "GBP5 WILD-TYPE" 
    TCGA-IB-A5ST     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
"GBP5 WILD-TYPE" "GBP5 WILD-TYPE" "GBP5 WILD-TYPE" "GBP5 WILD-TYPE" 
    TCGA-PZ-A5RE     TCGA-Q3-A5QY     TCGA-US-A779     TCGA-US-A77E 
"GBP5 WILD-TYPE" "GBP5 WILD-TYPE" "GBP5 WILD-TYPE" "GBP5 WILD-TYPE" 
    TCGA-US-A77J 
"GBP5 WILD-TYPE" 
    TCGA-F2-6879     TCGA-F2-6880     TCGA-F2-7273     TCGA-F2-7276 
"GBP5 WILD-TYPE" "GBP5 WILD-TYPE" "GBP5 WILD-TYPE"   "GBP5 MUTATED" 
    TCGA-F2-A44G     TCGA-F2-A44H     TCGA-FB-A4P5     TCGA-FB-A4P6 
"GBP5 WILD-TYPE" "GBP5 WILD-TYPE" "GBP5 WILD-TYPE" "GBP5 WILD-TYPE" 
    TCGA-FB-A545     TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-FB-A7DR 
"GBP5 WILD-TYPE" "GBP5 WILD-TYPE" "GBP5 WILD-TYPE" "GBP5 WILD-TYPE" 
    TCGA-FZ-5920     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-H6-8124 
"GBP5 WILD-TYPE" "GBP5 WILD-TYPE" "GBP5 WILD-TYPE"   "GBP5 MUTATED" 
    TCGA-H6-A45N     TCGA-H8-A6C1     TCGA-HZ-7289     TCGA-HZ-7918 
"GBP5 WILD-TYPE" "GBP5 WILD-TYPE" "GBP5 WILD-TYPE" "GBP5 WILD-TYPE" 
    TCGA-HZ-7919     TCGA-HZ-7922     TCGA-HZ-7923     TCGA-HZ-7924 
"GBP5 WILD-TYPE" "GBP5 WILD-TYPE" "GBP5 WILD-TYPE" "GBP5 WILD-TYPE" 
    TCGA-HZ-7925     TCGA-HZ-7926     TCGA-HZ-8001     TCGA-HZ-8002 
"GBP5 WILD-TYPE" "GBP5 WILD-TYPE" "GBP5 WILD-TYPE" "GBP5 WILD-TYPE" 
    TCGA-HZ-8003     TCGA-HZ-8005     TCGA-HZ-8315     TCGA-HZ-8317 
"GBP5 WILD-TYPE" "GBP5 WILD-TYPE" "GBP5 WILD-TYPE" "GBP5 WILD-TYPE" 
    TCGA-HZ-8636     TCGA-HZ-8638     TCGA-HZ-A49G     TCGA-HZ-A49H 
"GBP5 WILD-TYPE" "GBP5 WILD-TYPE"   "GBP5 MUTATED" "GBP5 WILD-TYPE" 
    TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-IB-7644     TCGA-IB-7645 
"GBP5 WILD-TYPE" "GBP5 WILD-TYPE" "GBP5 WILD-TYPE" "GBP5 WILD-TYPE" 
    TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7651 
"GBP5 WILD-TYPE" "GBP5 WILD-TYPE" "GBP5 WILD-TYPE"   "GBP5 MUTATED" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887 
"GBP5 WILD-TYPE" "GBP5 WILD-TYPE" "GBP5 WILD-TYPE" "GBP5 WILD-TYPE" 
    TCGA-IB-7888     TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891 
"GBP5 WILD-TYPE" "GBP5 WILD-TYPE" "GBP5 WILD-TYPE" "GBP5 WILD-TYPE" 
    TCGA-IB-7893     TCGA-IB-7897     TCGA-IB-8126     TCGA-IB-8127 
"GBP5 WILD-TYPE" "GBP5 WILD-TYPE" "GBP5 WILD-TYPE" "GBP5 WILD-TYPE" 
    TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS 
"GBP5 WILD-TYPE" "GBP5 WILD-TYPE" "GBP5 WILD-TYPE" "GBP5 WILD-TYPE" 
    TCGA-IB-A5ST     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
"GBP5 WILD-TYPE" "GBP5 WILD-TYPE" "GBP5 WILD-TYPE" "GBP5 WILD-TYPE" 
    TCGA-PZ-A5RE     TCGA-Q3-A5QY     TCGA-US-A779     TCGA-US-A77E 
"GBP5 WILD-TYPE" "GBP5 WILD-TYPE" "GBP5 WILD-TYPE" "GBP5 WILD-TYPE" 
    TCGA-US-A77J 
"GBP5 WILD-TYPE" 
[1] "hr=" "1.2"
D346V2, continuous
                vv
clus             STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  GBP5 MUTATED          0        0         0         4         0        0
  GBP5 WILD-TYPE        1        4        11        47         2        3
D346V3, multiclass
                vv
clus             T1+T2 T3+T4
  GBP5 MUTATED       1     3
  GBP5 WILD-TYPE     5    63
D346V4, multiclass
       clus
vv      GBP5 MUTATED GBP5 WILD-TYPE
  T1+T2            1              5
  T3+T4            3             63
D346V5, binary
                cls
clus              0  1
  GBP5 MUTATED    0  4
  GBP5 WILD-TYPE 17 50
[1] "tbl2"
                cls
clus             [,1] [,2]
  GBP5 MUTATED      0    4
  GBP5 WILD-TYPE   17   50
   clus
vv  GBP5 MUTATED GBP5 WILD-TYPE
  0            0             17
  1            4             50
                vv
clus             M0 M1 MX
  GBP5 MUTATED    3  0  1
  GBP5 WILD-TYPE 36  3 29
D346V6, multiclass
    clus
vv   GBP5 MUTATED GBP5 WILD-TYPE
  M0            3             36
  M1            0              3
  MX            1             29
D346V7, binary
                cls
clus              0  1
  GBP5 MUTATED    3  1
  GBP5 WILD-TYPE 33 35
[1] "tbl2"
                cls
clus             [,1] [,2]
  GBP5 MUTATED      3    1
  GBP5 WILD-TYPE   33   35
        clus
vv       GBP5 MUTATED GBP5 WILD-TYPE
  FEMALE            3             33
  MALE              1             35
                vv
clus             PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  GBP5 MUTATED                                     4
  GBP5 WILD-TYPE                                  61
                vv
clus             PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  GBP5 MUTATED                                       0
  GBP5 WILD-TYPE                                     4
                vv
clus             PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  GBP5 MUTATED                                                  0
  GBP5 WILD-TYPE                                                2
D346V8, multiclass
                                                  clus
vv                                                 GBP5 MUTATED GBP5 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                         4             61
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                       0              4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA            0              2
D346V9, continuous
[1] "Remove cluster labels:" "GBP5 MUTATED"          
clus
  GBP5 MUTATED GBP5 WILD-TYPE 
             2             20 
    TCGA-F2-6880     TCGA-FB-A4P5     TCGA-FB-A4P6     TCGA-FB-A5VM 
"GBP5 WILD-TYPE" "GBP5 WILD-TYPE" "GBP5 WILD-TYPE" "GBP5 WILD-TYPE" 
    TCGA-FB-A78T     TCGA-FB-A7DR     TCGA-H6-A45N     TCGA-H8-A6C1 
"GBP5 WILD-TYPE" "GBP5 WILD-TYPE" "GBP5 WILD-TYPE" "GBP5 WILD-TYPE" 
    TCGA-IB-7644     TCGA-IB-7649     TCGA-IB-7885     TCGA-IB-7886 
"GBP5 WILD-TYPE" "GBP5 WILD-TYPE" "GBP5 WILD-TYPE" "GBP5 WILD-TYPE" 
    TCGA-IB-7887     TCGA-IB-7891     TCGA-IB-8126     TCGA-IB-8127 
"GBP5 WILD-TYPE" "GBP5 WILD-TYPE" "GBP5 WILD-TYPE" "GBP5 WILD-TYPE" 
    TCGA-IB-A5SS     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
"GBP5 WILD-TYPE" "GBP5 WILD-TYPE" "GBP5 WILD-TYPE" "GBP5 WILD-TYPE" 
D346V10, continuous
[1] "Remove cluster labels:" "GBP5 MUTATED"          
clus
  GBP5 MUTATED GBP5 WILD-TYPE 
             2             17 
    TCGA-FB-A4P5     TCGA-FB-A4P6     TCGA-FB-A5VM     TCGA-FB-A78T 
"GBP5 WILD-TYPE" "GBP5 WILD-TYPE" "GBP5 WILD-TYPE" "GBP5 WILD-TYPE" 
    TCGA-FB-A7DR     TCGA-H8-A6C1     TCGA-IB-7644     TCGA-IB-7649 
"GBP5 WILD-TYPE" "GBP5 WILD-TYPE" "GBP5 WILD-TYPE" "GBP5 WILD-TYPE" 
    TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7891     TCGA-IB-8126 
"GBP5 WILD-TYPE" "GBP5 WILD-TYPE" "GBP5 WILD-TYPE" "GBP5 WILD-TYPE" 
    TCGA-IB-8127     TCGA-IB-A5SS     TCGA-IB-A6UG     TCGA-LB-A7SX 
"GBP5 WILD-TYPE" "GBP5 WILD-TYPE" "GBP5 WILD-TYPE" "GBP5 WILD-TYPE" 
    TCGA-OE-A75W 
"GBP5 WILD-TYPE" 
                vv
clus             R0 R1 RX
  GBP5 MUTATED    3  1  0
  GBP5 WILD-TYPE 39 23  2
D346V11, multiclass
    clus
vv   GBP5 MUTATED GBP5 WILD-TYPE
  R0            3             39
  R1            1             23
  RX            0              2
D346V12, continuous

Clustering(347) Variable = SCYL3 MUTATION ANALYSIS
D347V1, survival
                 sevent
clus2              0  1
  SCYL3 MUTATED    3  4
  SCYL3 WILD-TYPE 37 25
  SCYL3 MUTATED SCYL3 WILD-TYPE 
              7              62 
  SCYL3 MUTATED SCYL3 WILD-TYPE 
              4              25 
$`SCYL3 MUTATED`
TCGA-F2-A44H TCGA-HZ-8005 TCGA-HZ-A49H TCGA-IB-7651 TCGA-IB-7886 TCGA-IB-7887 
       19.27         3.95         0.95        19.82         4.04         3.62 
TCGA-IB-8127 
       17.16 

$`SCYL3 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-FB-A4P5 
       10.98         9.70        11.84         7.10         5.03         0.13 
TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR TCGA-FZ-5920 
       11.93        12.66         2.47         0.03         5.46         2.01 
TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7289 
       36.20        20.81        12.89         7.66        13.02         7.89 
TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 
        0.92         0.66         0.13         0.26        12.13        11.87 
TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8315 TCGA-HZ-8317 
        0.26         0.62         0.79         0.69         0.92         0.53 
TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 
        0.16         2.99         0.76         6.38         1.51        11.41 
TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7652 TCGA-IB-7885 
       49.38         4.77        21.90        15.35        15.65        27.98 
TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-7897 
       43.79        15.81        19.66        16.04         3.85        15.98 
TCGA-IB-8126 TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST 
        0.56        10.82         9.86         7.20        15.12         0.26 
TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 
        1.35         4.18         3.62         8.12        13.68        16.80 
TCGA-US-A77E TCGA-US-A77J 
       14.14        18.67 

  SCYL3 MUTATED SCYL3 WILD-TYPE 
           0.95            0.03 
  SCYL3 MUTATED SCYL3 WILD-TYPE 
          19.82           49.38 
  SCYL3 MUTATED SCYL3 WILD-TYPE 
          4.040           7.775 
[1] "0.9 - 19.8 (4.0)" "0.0 - 49.4 (7.8)"
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"SCYL3 WILD-TYPE" "SCYL3 WILD-TYPE" "SCYL3 WILD-TYPE" "SCYL3 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"SCYL3 WILD-TYPE"   "SCYL3 MUTATED" "SCYL3 WILD-TYPE" "SCYL3 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"SCYL3 WILD-TYPE" "SCYL3 WILD-TYPE" "SCYL3 WILD-TYPE" "SCYL3 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"SCYL3 WILD-TYPE" "SCYL3 WILD-TYPE" "SCYL3 WILD-TYPE" "SCYL3 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"SCYL3 WILD-TYPE" "SCYL3 WILD-TYPE" "SCYL3 WILD-TYPE" "SCYL3 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"SCYL3 WILD-TYPE" "SCYL3 WILD-TYPE" "SCYL3 WILD-TYPE" "SCYL3 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"SCYL3 WILD-TYPE" "SCYL3 WILD-TYPE" "SCYL3 WILD-TYPE" "SCYL3 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"SCYL3 WILD-TYPE"   "SCYL3 MUTATED" "SCYL3 WILD-TYPE" "SCYL3 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"SCYL3 WILD-TYPE" "SCYL3 WILD-TYPE" "SCYL3 WILD-TYPE"   "SCYL3 MUTATED" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"SCYL3 WILD-TYPE" "SCYL3 WILD-TYPE" "SCYL3 WILD-TYPE" "SCYL3 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"SCYL3 WILD-TYPE" "SCYL3 WILD-TYPE" "SCYL3 WILD-TYPE"   "SCYL3 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"SCYL3 WILD-TYPE" "SCYL3 WILD-TYPE"   "SCYL3 MUTATED"   "SCYL3 MUTATED" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"SCYL3 WILD-TYPE" "SCYL3 WILD-TYPE" "SCYL3 WILD-TYPE" "SCYL3 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"SCYL3 WILD-TYPE" "SCYL3 WILD-TYPE" "SCYL3 WILD-TYPE"   "SCYL3 MUTATED" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"SCYL3 WILD-TYPE" "SCYL3 WILD-TYPE" "SCYL3 WILD-TYPE" "SCYL3 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"SCYL3 WILD-TYPE" "SCYL3 WILD-TYPE" "SCYL3 WILD-TYPE" "SCYL3 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"SCYL3 WILD-TYPE" "SCYL3 WILD-TYPE" "SCYL3 WILD-TYPE" "SCYL3 WILD-TYPE" 
     TCGA-US-A77J 
"SCYL3 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"SCYL3 WILD-TYPE" "SCYL3 WILD-TYPE" "SCYL3 WILD-TYPE" "SCYL3 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"SCYL3 WILD-TYPE"   "SCYL3 MUTATED" "SCYL3 WILD-TYPE" "SCYL3 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"SCYL3 WILD-TYPE" "SCYL3 WILD-TYPE" "SCYL3 WILD-TYPE" "SCYL3 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"SCYL3 WILD-TYPE" "SCYL3 WILD-TYPE" "SCYL3 WILD-TYPE" "SCYL3 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"SCYL3 WILD-TYPE" "SCYL3 WILD-TYPE" "SCYL3 WILD-TYPE" "SCYL3 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"SCYL3 WILD-TYPE" "SCYL3 WILD-TYPE" "SCYL3 WILD-TYPE" "SCYL3 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"SCYL3 WILD-TYPE" "SCYL3 WILD-TYPE" "SCYL3 WILD-TYPE" "SCYL3 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"SCYL3 WILD-TYPE"   "SCYL3 MUTATED" "SCYL3 WILD-TYPE" "SCYL3 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"SCYL3 WILD-TYPE" "SCYL3 WILD-TYPE" "SCYL3 WILD-TYPE"   "SCYL3 MUTATED" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"SCYL3 WILD-TYPE" "SCYL3 WILD-TYPE" "SCYL3 WILD-TYPE" "SCYL3 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"SCYL3 WILD-TYPE" "SCYL3 WILD-TYPE" "SCYL3 WILD-TYPE"   "SCYL3 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"SCYL3 WILD-TYPE" "SCYL3 WILD-TYPE"   "SCYL3 MUTATED"   "SCYL3 MUTATED" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"SCYL3 WILD-TYPE" "SCYL3 WILD-TYPE" "SCYL3 WILD-TYPE" "SCYL3 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"SCYL3 WILD-TYPE" "SCYL3 WILD-TYPE" "SCYL3 WILD-TYPE"   "SCYL3 MUTATED" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"SCYL3 WILD-TYPE" "SCYL3 WILD-TYPE" "SCYL3 WILD-TYPE" "SCYL3 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"SCYL3 WILD-TYPE" "SCYL3 WILD-TYPE" "SCYL3 WILD-TYPE" "SCYL3 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"SCYL3 WILD-TYPE" "SCYL3 WILD-TYPE" "SCYL3 WILD-TYPE" "SCYL3 WILD-TYPE" 
     TCGA-US-A77J 
"SCYL3 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"SCYL3 WILD-TYPE" "SCYL3 WILD-TYPE" "SCYL3 WILD-TYPE" "SCYL3 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"SCYL3 WILD-TYPE"   "SCYL3 MUTATED" "SCYL3 WILD-TYPE" "SCYL3 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"SCYL3 WILD-TYPE" "SCYL3 WILD-TYPE" "SCYL3 WILD-TYPE" "SCYL3 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"SCYL3 WILD-TYPE" "SCYL3 WILD-TYPE" "SCYL3 WILD-TYPE" "SCYL3 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"SCYL3 WILD-TYPE" "SCYL3 WILD-TYPE" "SCYL3 WILD-TYPE" "SCYL3 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"SCYL3 WILD-TYPE" "SCYL3 WILD-TYPE" "SCYL3 WILD-TYPE" "SCYL3 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"SCYL3 WILD-TYPE" "SCYL3 WILD-TYPE" "SCYL3 WILD-TYPE" "SCYL3 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"SCYL3 WILD-TYPE"   "SCYL3 MUTATED" "SCYL3 WILD-TYPE" "SCYL3 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"SCYL3 WILD-TYPE" "SCYL3 WILD-TYPE" "SCYL3 WILD-TYPE"   "SCYL3 MUTATED" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"SCYL3 WILD-TYPE" "SCYL3 WILD-TYPE" "SCYL3 WILD-TYPE" "SCYL3 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"SCYL3 WILD-TYPE" "SCYL3 WILD-TYPE" "SCYL3 WILD-TYPE"   "SCYL3 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"SCYL3 WILD-TYPE" "SCYL3 WILD-TYPE"   "SCYL3 MUTATED"   "SCYL3 MUTATED" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"SCYL3 WILD-TYPE" "SCYL3 WILD-TYPE" "SCYL3 WILD-TYPE" "SCYL3 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"SCYL3 WILD-TYPE" "SCYL3 WILD-TYPE" "SCYL3 WILD-TYPE"   "SCYL3 MUTATED" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"SCYL3 WILD-TYPE" "SCYL3 WILD-TYPE" "SCYL3 WILD-TYPE" "SCYL3 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"SCYL3 WILD-TYPE" "SCYL3 WILD-TYPE" "SCYL3 WILD-TYPE" "SCYL3 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"SCYL3 WILD-TYPE" "SCYL3 WILD-TYPE" "SCYL3 WILD-TYPE" "SCYL3 WILD-TYPE" 
     TCGA-US-A77J 
"SCYL3 WILD-TYPE" 
[1] "hr=" "1.3"
D347V2, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  SCYL3 MUTATED          0        0         1         6         0        0
  SCYL3 WILD-TYPE        1        4        10        45         2        3
D347V3, multiclass
                 vv
clus              T1+T2 T3+T4
  SCYL3 MUTATED       0     7
  SCYL3 WILD-TYPE     6    59
D347V4, multiclass
       clus
vv      SCYL3 MUTATED SCYL3 WILD-TYPE
  T1+T2             0               6
  T3+T4             7              59
D347V5, binary
                 cls
clus               0  1
  SCYL3 MUTATED    1  6
  SCYL3 WILD-TYPE 16 48
[1] "tbl2"
                 cls
clus              [,1] [,2]
  SCYL3 MUTATED      1    6
  SCYL3 WILD-TYPE   16   48
   clus
vv  SCYL3 MUTATED SCYL3 WILD-TYPE
  0             1              16
  1             6              48
                 vv
clus              M0 M1 MX
  SCYL3 MUTATED    5  0  2
  SCYL3 WILD-TYPE 34  3 28
D347V6, multiclass
    clus
vv   SCYL3 MUTATED SCYL3 WILD-TYPE
  M0             5              34
  M1             0               3
  MX             2              28
D347V7, binary
                 cls
clus               0  1
  SCYL3 MUTATED    3  4
  SCYL3 WILD-TYPE 33 32
[1] "tbl2"
                 cls
clus              [,1] [,2]
  SCYL3 MUTATED      3    4
  SCYL3 WILD-TYPE   33   32
        clus
vv       SCYL3 MUTATED SCYL3 WILD-TYPE
  FEMALE             3              33
  MALE               4              32
                 vv
clus              PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  SCYL3 MUTATED                                     7
  SCYL3 WILD-TYPE                                  58
                 vv
clus              PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  SCYL3 MUTATED                                       0
  SCYL3 WILD-TYPE                                     4
                 vv
clus              PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  SCYL3 MUTATED                                                  0
  SCYL3 WILD-TYPE                                                2
D347V8, multiclass
                                                  clus
vv                                                 SCYL3 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                          7
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                        0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA             0
                                                  clus
vv                                                 SCYL3 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                           58
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                          4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA               2
D347V9, continuous
D347V10, continuous
                 vv
clus              R0 R1 RX
  SCYL3 MUTATED    3  4  0
  SCYL3 WILD-TYPE 39 20  2
D347V11, multiclass
    clus
vv   SCYL3 MUTATED SCYL3 WILD-TYPE
  R0             3              39
  R1             4              20
  RX             0               2
D347V12, continuous

Clustering(348) Variable = RERE MUTATION ANALYSIS
D348V1, survival
                sevent
clus2             0  1
  RERE MUTATED    4  1
  RERE WILD-TYPE 36 28
  RERE MUTATED RERE WILD-TYPE 
             5             64 
  RERE MUTATED RERE WILD-TYPE 
             1             28 
$`RERE MUTATED`
TCGA-F2-6880 TCGA-HZ-7289 TCGA-HZ-8636 TCGA-IB-7651 TCGA-IB-7885 
        9.70         7.89         0.16        19.82        27.98 

$`RERE WILD-TYPE`
TCGA-F2-6879 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H TCGA-FB-A4P5 
       10.98        11.84         7.10         5.03        19.27         0.13 
TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR TCGA-FZ-5920 
       11.93        12.66         2.47         0.03         5.46         2.01 
TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7918 
       36.20        20.81        12.89         7.66        13.02         0.92 
TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 
        0.66         0.13         0.26        12.13        11.87         0.26 
TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 
        0.62         0.79         0.69         3.95         0.92         0.53 
TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 
        2.99         0.76         0.95         6.38         1.51        11.41 
TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7652 TCGA-IB-7886 
       49.38         4.77        21.90        15.35        15.65         4.04 
TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-7893 
        3.62        43.79        15.81        19.66        16.04         3.85 
TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ 
       15.98         0.56        17.16        10.82         9.86         7.20 
TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W TCGA-PZ-A5RE 
       15.12         0.26         1.35         4.18         3.62         8.12 
TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
       13.68        16.80        14.14        18.67 

  RERE MUTATED RERE WILD-TYPE 
          0.16           0.03 
  RERE MUTATED RERE WILD-TYPE 
         27.98          49.38 
  RERE MUTATED RERE WILD-TYPE 
          9.70           7.15 
[1] "0.2 - 28.0 (9.7)" "0.0 - 49.4 (7.2)"
    TCGA-F2-6879     TCGA-F2-6880     TCGA-F2-7273     TCGA-F2-7276 
"RERE WILD-TYPE"   "RERE MUTATED" "RERE WILD-TYPE" "RERE WILD-TYPE" 
    TCGA-F2-A44G     TCGA-F2-A44H     TCGA-FB-A4P5     TCGA-FB-A4P6 
"RERE WILD-TYPE" "RERE WILD-TYPE" "RERE WILD-TYPE" "RERE WILD-TYPE" 
    TCGA-FB-A545     TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-FB-A7DR 
"RERE WILD-TYPE" "RERE WILD-TYPE" "RERE WILD-TYPE" "RERE WILD-TYPE" 
    TCGA-FZ-5920     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-H6-8124 
"RERE WILD-TYPE" "RERE WILD-TYPE" "RERE WILD-TYPE" "RERE WILD-TYPE" 
    TCGA-H6-A45N     TCGA-H8-A6C1     TCGA-HZ-7289     TCGA-HZ-7918 
"RERE WILD-TYPE" "RERE WILD-TYPE"   "RERE MUTATED" "RERE WILD-TYPE" 
    TCGA-HZ-7919     TCGA-HZ-7922     TCGA-HZ-7923     TCGA-HZ-7924 
"RERE WILD-TYPE" "RERE WILD-TYPE" "RERE WILD-TYPE" "RERE WILD-TYPE" 
    TCGA-HZ-7925     TCGA-HZ-7926     TCGA-HZ-8001     TCGA-HZ-8002 
"RERE WILD-TYPE" "RERE WILD-TYPE" "RERE WILD-TYPE" "RERE WILD-TYPE" 
    TCGA-HZ-8003     TCGA-HZ-8005     TCGA-HZ-8315     TCGA-HZ-8317 
"RERE WILD-TYPE" "RERE WILD-TYPE" "RERE WILD-TYPE" "RERE WILD-TYPE" 
    TCGA-HZ-8636     TCGA-HZ-8638     TCGA-HZ-A49G     TCGA-HZ-A49H 
  "RERE MUTATED" "RERE WILD-TYPE" "RERE WILD-TYPE" "RERE WILD-TYPE" 
    TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-IB-7644     TCGA-IB-7645 
"RERE WILD-TYPE" "RERE WILD-TYPE" "RERE WILD-TYPE" "RERE WILD-TYPE" 
    TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7651 
"RERE WILD-TYPE" "RERE WILD-TYPE" "RERE WILD-TYPE"   "RERE MUTATED" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887 
"RERE WILD-TYPE"   "RERE MUTATED" "RERE WILD-TYPE" "RERE WILD-TYPE" 
    TCGA-IB-7888     TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891 
"RERE WILD-TYPE" "RERE WILD-TYPE" "RERE WILD-TYPE" "RERE WILD-TYPE" 
    TCGA-IB-7893     TCGA-IB-7897     TCGA-IB-8126     TCGA-IB-8127 
"RERE WILD-TYPE" "RERE WILD-TYPE" "RERE WILD-TYPE" "RERE WILD-TYPE" 
    TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS 
"RERE WILD-TYPE" "RERE WILD-TYPE" "RERE WILD-TYPE" "RERE WILD-TYPE" 
    TCGA-IB-A5ST     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
"RERE WILD-TYPE" "RERE WILD-TYPE" "RERE WILD-TYPE" "RERE WILD-TYPE" 
    TCGA-PZ-A5RE     TCGA-Q3-A5QY     TCGA-US-A779     TCGA-US-A77E 
"RERE WILD-TYPE" "RERE WILD-TYPE" "RERE WILD-TYPE" "RERE WILD-TYPE" 
    TCGA-US-A77J 
"RERE WILD-TYPE" 
    TCGA-F2-6879     TCGA-F2-6880     TCGA-F2-7273     TCGA-F2-7276 
"RERE WILD-TYPE"   "RERE MUTATED" "RERE WILD-TYPE" "RERE WILD-TYPE" 
    TCGA-F2-A44G     TCGA-F2-A44H     TCGA-FB-A4P5     TCGA-FB-A4P6 
"RERE WILD-TYPE" "RERE WILD-TYPE" "RERE WILD-TYPE" "RERE WILD-TYPE" 
    TCGA-FB-A545     TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-FB-A7DR 
"RERE WILD-TYPE" "RERE WILD-TYPE" "RERE WILD-TYPE" "RERE WILD-TYPE" 
    TCGA-FZ-5920     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-H6-8124 
"RERE WILD-TYPE" "RERE WILD-TYPE" "RERE WILD-TYPE" "RERE WILD-TYPE" 
    TCGA-H6-A45N     TCGA-H8-A6C1     TCGA-HZ-7289     TCGA-HZ-7918 
"RERE WILD-TYPE" "RERE WILD-TYPE"   "RERE MUTATED" "RERE WILD-TYPE" 
    TCGA-HZ-7919     TCGA-HZ-7922     TCGA-HZ-7923     TCGA-HZ-7924 
"RERE WILD-TYPE" "RERE WILD-TYPE" "RERE WILD-TYPE" "RERE WILD-TYPE" 
    TCGA-HZ-7925     TCGA-HZ-7926     TCGA-HZ-8001     TCGA-HZ-8002 
"RERE WILD-TYPE" "RERE WILD-TYPE" "RERE WILD-TYPE" "RERE WILD-TYPE" 
    TCGA-HZ-8003     TCGA-HZ-8005     TCGA-HZ-8315     TCGA-HZ-8317 
"RERE WILD-TYPE" "RERE WILD-TYPE" "RERE WILD-TYPE" "RERE WILD-TYPE" 
    TCGA-HZ-8636     TCGA-HZ-8638     TCGA-HZ-A49G     TCGA-HZ-A49H 
  "RERE MUTATED" "RERE WILD-TYPE" "RERE WILD-TYPE" "RERE WILD-TYPE" 
    TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-IB-7644     TCGA-IB-7645 
"RERE WILD-TYPE" "RERE WILD-TYPE" "RERE WILD-TYPE" "RERE WILD-TYPE" 
    TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7651 
"RERE WILD-TYPE" "RERE WILD-TYPE" "RERE WILD-TYPE"   "RERE MUTATED" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887 
"RERE WILD-TYPE"   "RERE MUTATED" "RERE WILD-TYPE" "RERE WILD-TYPE" 
    TCGA-IB-7888     TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891 
"RERE WILD-TYPE" "RERE WILD-TYPE" "RERE WILD-TYPE" "RERE WILD-TYPE" 
    TCGA-IB-7893     TCGA-IB-7897     TCGA-IB-8126     TCGA-IB-8127 
"RERE WILD-TYPE" "RERE WILD-TYPE" "RERE WILD-TYPE" "RERE WILD-TYPE" 
    TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS 
"RERE WILD-TYPE" "RERE WILD-TYPE" "RERE WILD-TYPE" "RERE WILD-TYPE" 
    TCGA-IB-A5ST     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
"RERE WILD-TYPE" "RERE WILD-TYPE" "RERE WILD-TYPE" "RERE WILD-TYPE" 
    TCGA-PZ-A5RE     TCGA-Q3-A5QY     TCGA-US-A779     TCGA-US-A77E 
"RERE WILD-TYPE" "RERE WILD-TYPE" "RERE WILD-TYPE" "RERE WILD-TYPE" 
    TCGA-US-A77J 
"RERE WILD-TYPE" 
    TCGA-F2-6879     TCGA-F2-6880     TCGA-F2-7273     TCGA-F2-7276 
"RERE WILD-TYPE"   "RERE MUTATED" "RERE WILD-TYPE" "RERE WILD-TYPE" 
    TCGA-F2-A44G     TCGA-F2-A44H     TCGA-FB-A4P5     TCGA-FB-A4P6 
"RERE WILD-TYPE" "RERE WILD-TYPE" "RERE WILD-TYPE" "RERE WILD-TYPE" 
    TCGA-FB-A545     TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-FB-A7DR 
"RERE WILD-TYPE" "RERE WILD-TYPE" "RERE WILD-TYPE" "RERE WILD-TYPE" 
    TCGA-FZ-5920     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-H6-8124 
"RERE WILD-TYPE" "RERE WILD-TYPE" "RERE WILD-TYPE" "RERE WILD-TYPE" 
    TCGA-H6-A45N     TCGA-H8-A6C1     TCGA-HZ-7289     TCGA-HZ-7918 
"RERE WILD-TYPE" "RERE WILD-TYPE"   "RERE MUTATED" "RERE WILD-TYPE" 
    TCGA-HZ-7919     TCGA-HZ-7922     TCGA-HZ-7923     TCGA-HZ-7924 
"RERE WILD-TYPE" "RERE WILD-TYPE" "RERE WILD-TYPE" "RERE WILD-TYPE" 
    TCGA-HZ-7925     TCGA-HZ-7926     TCGA-HZ-8001     TCGA-HZ-8002 
"RERE WILD-TYPE" "RERE WILD-TYPE" "RERE WILD-TYPE" "RERE WILD-TYPE" 
    TCGA-HZ-8003     TCGA-HZ-8005     TCGA-HZ-8315     TCGA-HZ-8317 
"RERE WILD-TYPE" "RERE WILD-TYPE" "RERE WILD-TYPE" "RERE WILD-TYPE" 
    TCGA-HZ-8636     TCGA-HZ-8638     TCGA-HZ-A49G     TCGA-HZ-A49H 
  "RERE MUTATED" "RERE WILD-TYPE" "RERE WILD-TYPE" "RERE WILD-TYPE" 
    TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-IB-7644     TCGA-IB-7645 
"RERE WILD-TYPE" "RERE WILD-TYPE" "RERE WILD-TYPE" "RERE WILD-TYPE" 
    TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7651 
"RERE WILD-TYPE" "RERE WILD-TYPE" "RERE WILD-TYPE"   "RERE MUTATED" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887 
"RERE WILD-TYPE"   "RERE MUTATED" "RERE WILD-TYPE" "RERE WILD-TYPE" 
    TCGA-IB-7888     TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891 
"RERE WILD-TYPE" "RERE WILD-TYPE" "RERE WILD-TYPE" "RERE WILD-TYPE" 
    TCGA-IB-7893     TCGA-IB-7897     TCGA-IB-8126     TCGA-IB-8127 
"RERE WILD-TYPE" "RERE WILD-TYPE" "RERE WILD-TYPE" "RERE WILD-TYPE" 
    TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS 
"RERE WILD-TYPE" "RERE WILD-TYPE" "RERE WILD-TYPE" "RERE WILD-TYPE" 
    TCGA-IB-A5ST     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
"RERE WILD-TYPE" "RERE WILD-TYPE" "RERE WILD-TYPE" "RERE WILD-TYPE" 
    TCGA-PZ-A5RE     TCGA-Q3-A5QY     TCGA-US-A779     TCGA-US-A77E 
"RERE WILD-TYPE" "RERE WILD-TYPE" "RERE WILD-TYPE" "RERE WILD-TYPE" 
    TCGA-US-A77J 
"RERE WILD-TYPE" 
[1] "hr=" "3.6"
D348V2, continuous
                vv
clus             STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  RERE MUTATED          0        0         0         4         0        1
  RERE WILD-TYPE        1        4        11        47         2        2
D348V3, multiclass
                vv
clus             T1+T2 T3+T4
  RERE MUTATED       0     5
  RERE WILD-TYPE     6    61
D348V4, multiclass
       clus
vv      RERE MUTATED RERE WILD-TYPE
  T1+T2            0              6
  T3+T4            5             61
D348V5, binary
                cls
clus              0  1
  RERE MUTATED    1  4
  RERE WILD-TYPE 16 50
[1] "tbl2"
                cls
clus             [,1] [,2]
  RERE MUTATED      1    4
  RERE WILD-TYPE   16   50
   clus
vv  RERE MUTATED RERE WILD-TYPE
  0            1             16
  1            4             50
                vv
clus             M0 M1 MX
  RERE MUTATED    3  1  1
  RERE WILD-TYPE 36  2 29
D348V6, multiclass
    clus
vv   RERE MUTATED RERE WILD-TYPE
  M0            3             36
  M1            1              2
  MX            1             29
D348V7, binary
                cls
clus              0  1
  RERE MUTATED    3  2
  RERE WILD-TYPE 33 34
[1] "tbl2"
                cls
clus             [,1] [,2]
  RERE MUTATED      3    2
  RERE WILD-TYPE   33   34
        clus
vv       RERE MUTATED RERE WILD-TYPE
  FEMALE            3             33
  MALE              2             34
                vv
clus             PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  RERE MUTATED                                     4
  RERE WILD-TYPE                                  61
                vv
clus             PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  RERE MUTATED                                       1
  RERE WILD-TYPE                                     3
                vv
clus             PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  RERE MUTATED                                                  0
  RERE WILD-TYPE                                                2
D348V8, multiclass
                                                  clus
vv                                                 RERE MUTATED RERE WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                         4             61
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                       1              3
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA            0              2
D348V9, continuous
D348V10, continuous
[1] "Remove cluster labels:" "RERE MUTATED"          
clus
  RERE MUTATED RERE WILD-TYPE 
             2             17 
    TCGA-FB-A4P5     TCGA-FB-A4P6     TCGA-FB-A5VM     TCGA-FB-A78T 
"RERE WILD-TYPE" "RERE WILD-TYPE" "RERE WILD-TYPE" "RERE WILD-TYPE" 
    TCGA-FB-A7DR     TCGA-H6-8124     TCGA-H8-A6C1     TCGA-IB-7644 
"RERE WILD-TYPE" "RERE WILD-TYPE" "RERE WILD-TYPE" "RERE WILD-TYPE" 
    TCGA-IB-7649     TCGA-IB-7886     TCGA-IB-7891     TCGA-IB-8126 
"RERE WILD-TYPE" "RERE WILD-TYPE" "RERE WILD-TYPE" "RERE WILD-TYPE" 
    TCGA-IB-8127     TCGA-IB-A5SS     TCGA-IB-A6UG     TCGA-LB-A7SX 
"RERE WILD-TYPE" "RERE WILD-TYPE" "RERE WILD-TYPE" "RERE WILD-TYPE" 
    TCGA-OE-A75W 
"RERE WILD-TYPE" 
                vv
clus             R0 R1 RX
  RERE MUTATED    3  1  1
  RERE WILD-TYPE 39 23  1
D348V11, multiclass
    clus
vv   RERE MUTATED RERE WILD-TYPE
  R0            3             39
  R1            1             23
  RX            1              1
D348V12, continuous

Clustering(349) Variable = CDHR5 MUTATION ANALYSIS
D349V1, survival
                 sevent
clus2              0  1
  CDHR5 MUTATED    4  3
  CDHR5 WILD-TYPE 36 26
  CDHR5 MUTATED CDHR5 WILD-TYPE 
              7              62 
  CDHR5 MUTATED CDHR5 WILD-TYPE 
              3              26 
$`CDHR5 MUTATED`
TCGA-HZ-8003 TCGA-IB-7893 TCGA-IB-8126 TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-PZ-A5RE 
        0.69         3.85         0.56         9.86         7.20         8.12 
TCGA-US-A779 
       16.80 

$`CDHR5 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P5 TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR 
        0.13        11.93        12.66         2.47         0.03         5.46 
TCGA-FZ-5920 TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 
        2.01        36.20        20.81        12.89         7.66        13.02 
TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 
        7.89         0.92         0.66         0.13         0.26        12.13 
TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8005 TCGA-HZ-8315 
       11.87         0.26         0.62         0.79         3.95         0.92 
TCGA-HZ-8317 TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH 
        0.53         0.16         2.99         0.76         0.95         6.38 
TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 
        1.51        11.41        49.38         4.77        21.90        15.35 
TCGA-IB-7651 TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7888 
       19.82        15.65        27.98         4.04         3.62        43.79 
TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-7897 TCGA-IB-8127 TCGA-IB-A5SO 
       15.81        19.66        16.04        15.98        17.16        10.82 
TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W TCGA-Q3-A5QY 
       15.12         0.26         1.35         4.18         3.62        13.68 
TCGA-US-A77E TCGA-US-A77J 
       14.14        18.67 

  CDHR5 MUTATED CDHR5 WILD-TYPE 
           0.56            0.03 
  CDHR5 MUTATED CDHR5 WILD-TYPE 
          16.80           49.38 
  CDHR5 MUTATED CDHR5 WILD-TYPE 
          7.200           7.775 
[1] "0.6 - 16.8 (7.2)" "0.0 - 49.4 (7.8)"
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"CDHR5 WILD-TYPE" "CDHR5 WILD-TYPE" "CDHR5 WILD-TYPE" "CDHR5 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"CDHR5 WILD-TYPE" "CDHR5 WILD-TYPE" "CDHR5 WILD-TYPE" "CDHR5 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"CDHR5 WILD-TYPE" "CDHR5 WILD-TYPE" "CDHR5 WILD-TYPE" "CDHR5 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"CDHR5 WILD-TYPE" "CDHR5 WILD-TYPE" "CDHR5 WILD-TYPE" "CDHR5 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"CDHR5 WILD-TYPE" "CDHR5 WILD-TYPE" "CDHR5 WILD-TYPE" "CDHR5 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"CDHR5 WILD-TYPE" "CDHR5 WILD-TYPE" "CDHR5 WILD-TYPE" "CDHR5 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"CDHR5 WILD-TYPE" "CDHR5 WILD-TYPE" "CDHR5 WILD-TYPE" "CDHR5 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
  "CDHR5 MUTATED" "CDHR5 WILD-TYPE" "CDHR5 WILD-TYPE" "CDHR5 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"CDHR5 WILD-TYPE" "CDHR5 WILD-TYPE" "CDHR5 WILD-TYPE" "CDHR5 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"CDHR5 WILD-TYPE" "CDHR5 WILD-TYPE" "CDHR5 WILD-TYPE" "CDHR5 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"CDHR5 WILD-TYPE" "CDHR5 WILD-TYPE" "CDHR5 WILD-TYPE" "CDHR5 WILD-TYPE" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"CDHR5 WILD-TYPE" "CDHR5 WILD-TYPE" "CDHR5 WILD-TYPE" "CDHR5 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"CDHR5 WILD-TYPE" "CDHR5 WILD-TYPE" "CDHR5 WILD-TYPE" "CDHR5 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
  "CDHR5 MUTATED" "CDHR5 WILD-TYPE"   "CDHR5 MUTATED" "CDHR5 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"CDHR5 WILD-TYPE"   "CDHR5 MUTATED"   "CDHR5 MUTATED" "CDHR5 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"CDHR5 WILD-TYPE" "CDHR5 WILD-TYPE" "CDHR5 WILD-TYPE" "CDHR5 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
  "CDHR5 MUTATED" "CDHR5 WILD-TYPE"   "CDHR5 MUTATED" "CDHR5 WILD-TYPE" 
     TCGA-US-A77J 
"CDHR5 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"CDHR5 WILD-TYPE" "CDHR5 WILD-TYPE" "CDHR5 WILD-TYPE" "CDHR5 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"CDHR5 WILD-TYPE" "CDHR5 WILD-TYPE" "CDHR5 WILD-TYPE" "CDHR5 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"CDHR5 WILD-TYPE" "CDHR5 WILD-TYPE" "CDHR5 WILD-TYPE" "CDHR5 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"CDHR5 WILD-TYPE" "CDHR5 WILD-TYPE" "CDHR5 WILD-TYPE" "CDHR5 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"CDHR5 WILD-TYPE" "CDHR5 WILD-TYPE" "CDHR5 WILD-TYPE" "CDHR5 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"CDHR5 WILD-TYPE" "CDHR5 WILD-TYPE" "CDHR5 WILD-TYPE" "CDHR5 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"CDHR5 WILD-TYPE" "CDHR5 WILD-TYPE" "CDHR5 WILD-TYPE" "CDHR5 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
  "CDHR5 MUTATED" "CDHR5 WILD-TYPE" "CDHR5 WILD-TYPE" "CDHR5 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"CDHR5 WILD-TYPE" "CDHR5 WILD-TYPE" "CDHR5 WILD-TYPE" "CDHR5 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"CDHR5 WILD-TYPE" "CDHR5 WILD-TYPE" "CDHR5 WILD-TYPE" "CDHR5 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"CDHR5 WILD-TYPE" "CDHR5 WILD-TYPE" "CDHR5 WILD-TYPE" "CDHR5 WILD-TYPE" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"CDHR5 WILD-TYPE" "CDHR5 WILD-TYPE" "CDHR5 WILD-TYPE" "CDHR5 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"CDHR5 WILD-TYPE" "CDHR5 WILD-TYPE" "CDHR5 WILD-TYPE" "CDHR5 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
  "CDHR5 MUTATED" "CDHR5 WILD-TYPE"   "CDHR5 MUTATED" "CDHR5 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"CDHR5 WILD-TYPE"   "CDHR5 MUTATED"   "CDHR5 MUTATED" "CDHR5 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"CDHR5 WILD-TYPE" "CDHR5 WILD-TYPE" "CDHR5 WILD-TYPE" "CDHR5 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
  "CDHR5 MUTATED" "CDHR5 WILD-TYPE"   "CDHR5 MUTATED" "CDHR5 WILD-TYPE" 
     TCGA-US-A77J 
"CDHR5 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"CDHR5 WILD-TYPE" "CDHR5 WILD-TYPE" "CDHR5 WILD-TYPE" "CDHR5 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"CDHR5 WILD-TYPE" "CDHR5 WILD-TYPE" "CDHR5 WILD-TYPE" "CDHR5 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"CDHR5 WILD-TYPE" "CDHR5 WILD-TYPE" "CDHR5 WILD-TYPE" "CDHR5 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"CDHR5 WILD-TYPE" "CDHR5 WILD-TYPE" "CDHR5 WILD-TYPE" "CDHR5 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"CDHR5 WILD-TYPE" "CDHR5 WILD-TYPE" "CDHR5 WILD-TYPE" "CDHR5 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"CDHR5 WILD-TYPE" "CDHR5 WILD-TYPE" "CDHR5 WILD-TYPE" "CDHR5 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"CDHR5 WILD-TYPE" "CDHR5 WILD-TYPE" "CDHR5 WILD-TYPE" "CDHR5 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
  "CDHR5 MUTATED" "CDHR5 WILD-TYPE" "CDHR5 WILD-TYPE" "CDHR5 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"CDHR5 WILD-TYPE" "CDHR5 WILD-TYPE" "CDHR5 WILD-TYPE" "CDHR5 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"CDHR5 WILD-TYPE" "CDHR5 WILD-TYPE" "CDHR5 WILD-TYPE" "CDHR5 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"CDHR5 WILD-TYPE" "CDHR5 WILD-TYPE" "CDHR5 WILD-TYPE" "CDHR5 WILD-TYPE" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"CDHR5 WILD-TYPE" "CDHR5 WILD-TYPE" "CDHR5 WILD-TYPE" "CDHR5 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"CDHR5 WILD-TYPE" "CDHR5 WILD-TYPE" "CDHR5 WILD-TYPE" "CDHR5 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
  "CDHR5 MUTATED" "CDHR5 WILD-TYPE"   "CDHR5 MUTATED" "CDHR5 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"CDHR5 WILD-TYPE"   "CDHR5 MUTATED"   "CDHR5 MUTATED" "CDHR5 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"CDHR5 WILD-TYPE" "CDHR5 WILD-TYPE" "CDHR5 WILD-TYPE" "CDHR5 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
  "CDHR5 MUTATED" "CDHR5 WILD-TYPE"   "CDHR5 MUTATED" "CDHR5 WILD-TYPE" 
     TCGA-US-A77J 
"CDHR5 WILD-TYPE" 
[1] "hr=" "1.9"
D349V2, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  CDHR5 MUTATED          0        1         2         3         1        0
  CDHR5 WILD-TYPE        1        3         9        48         1        3
D349V3, multiclass
                 vv
clus              T1+T2 T3+T4
  CDHR5 MUTATED       1     6
  CDHR5 WILD-TYPE     5    60
D349V4, multiclass
       clus
vv      CDHR5 MUTATED CDHR5 WILD-TYPE
  T1+T2             1               5
  T3+T4             6              60
D349V5, binary
                 cls
clus               0  1
  CDHR5 MUTATED    3  4
  CDHR5 WILD-TYPE 14 50
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CDHR5 MUTATED      3    4
  CDHR5 WILD-TYPE   14   50
   clus
vv  CDHR5 MUTATED CDHR5 WILD-TYPE
  0             3              14
  1             4              50
                 vv
clus              M0 M1 MX
  CDHR5 MUTATED    4  0  3
  CDHR5 WILD-TYPE 35  3 27
D349V6, multiclass
    clus
vv   CDHR5 MUTATED CDHR5 WILD-TYPE
  M0             4              35
  M1             0               3
  MX             3              27
D349V7, binary
                 cls
clus               0  1
  CDHR5 MUTATED    5  2
  CDHR5 WILD-TYPE 31 34
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CDHR5 MUTATED      5    2
  CDHR5 WILD-TYPE   31   34
        clus
vv       CDHR5 MUTATED CDHR5 WILD-TYPE
  FEMALE             5              31
  MALE               2              34
                 vv
clus              PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  CDHR5 MUTATED                                     7
  CDHR5 WILD-TYPE                                  58
                 vv
clus              PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  CDHR5 MUTATED                                       0
  CDHR5 WILD-TYPE                                     4
                 vv
clus              PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  CDHR5 MUTATED                                                  0
  CDHR5 WILD-TYPE                                                2
D349V8, multiclass
                                                  clus
vv                                                 CDHR5 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                          7
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                        0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA             0
                                                  clus
vv                                                 CDHR5 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                           58
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                          4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA               2
D349V9, continuous
[1] "Remove cluster labels:" "CDHR5 MUTATED"         
clus
  CDHR5 MUTATED CDHR5 WILD-TYPE 
              1              21 
     TCGA-F2-6880      TCGA-FB-A4P5      TCGA-FB-A4P6      TCGA-FB-A5VM 
"CDHR5 WILD-TYPE" "CDHR5 WILD-TYPE" "CDHR5 WILD-TYPE" "CDHR5 WILD-TYPE" 
     TCGA-FB-A78T      TCGA-FB-A7DR      TCGA-H6-8124      TCGA-H6-A45N 
"CDHR5 WILD-TYPE" "CDHR5 WILD-TYPE" "CDHR5 WILD-TYPE" "CDHR5 WILD-TYPE" 
     TCGA-H8-A6C1      TCGA-IB-7644      TCGA-IB-7649      TCGA-IB-7651 
"CDHR5 WILD-TYPE" "CDHR5 WILD-TYPE" "CDHR5 WILD-TYPE" "CDHR5 WILD-TYPE" 
     TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887      TCGA-IB-7891 
"CDHR5 WILD-TYPE" "CDHR5 WILD-TYPE" "CDHR5 WILD-TYPE" "CDHR5 WILD-TYPE" 
     TCGA-IB-8127      TCGA-IB-A5SS      TCGA-IB-A6UG      TCGA-LB-A7SX 
"CDHR5 WILD-TYPE" "CDHR5 WILD-TYPE" "CDHR5 WILD-TYPE" "CDHR5 WILD-TYPE" 
     TCGA-OE-A75W 
"CDHR5 WILD-TYPE" 
D349V10, continuous
[1] "Remove cluster labels:" "CDHR5 MUTATED"         
clus
  CDHR5 MUTATED CDHR5 WILD-TYPE 
              1              18 
     TCGA-FB-A4P5      TCGA-FB-A4P6      TCGA-FB-A5VM      TCGA-FB-A78T 
"CDHR5 WILD-TYPE" "CDHR5 WILD-TYPE" "CDHR5 WILD-TYPE" "CDHR5 WILD-TYPE" 
     TCGA-FB-A7DR      TCGA-H6-8124      TCGA-H8-A6C1      TCGA-IB-7644 
"CDHR5 WILD-TYPE" "CDHR5 WILD-TYPE" "CDHR5 WILD-TYPE" "CDHR5 WILD-TYPE" 
     TCGA-IB-7649      TCGA-IB-7651      TCGA-IB-7885      TCGA-IB-7886 
"CDHR5 WILD-TYPE" "CDHR5 WILD-TYPE" "CDHR5 WILD-TYPE" "CDHR5 WILD-TYPE" 
     TCGA-IB-7891      TCGA-IB-8127      TCGA-IB-A5SS      TCGA-IB-A6UG 
"CDHR5 WILD-TYPE" "CDHR5 WILD-TYPE" "CDHR5 WILD-TYPE" "CDHR5 WILD-TYPE" 
     TCGA-LB-A7SX      TCGA-OE-A75W 
"CDHR5 WILD-TYPE" "CDHR5 WILD-TYPE" 
                 vv
clus              R0 R1 RX
  CDHR5 MUTATED    4  2  0
  CDHR5 WILD-TYPE 38 22  2
D349V11, multiclass
    clus
vv   CDHR5 MUTATED CDHR5 WILD-TYPE
  R0             4              38
  R1             2              22
  RX             0               2
D349V12, continuous

Clustering(350) Variable = SATB1 MUTATION ANALYSIS
D350V1, survival
                 sevent
clus2              0  1
  SATB1 MUTATED    6  2
  SATB1 WILD-TYPE 34 27
  SATB1 MUTATED SATB1 WILD-TYPE 
              8              61 
  SATB1 MUTATED SATB1 WILD-TYPE 
              2              27 
$`SATB1 MUTATED`
TCGA-F2-7276 TCGA-FB-A4P6 TCGA-FB-A545 TCGA-HZ-7926 TCGA-HZ-8315 TCGA-HZ-8317 
        7.10        11.93        12.66         0.26         0.92         0.53 
TCGA-IB-7651 TCGA-IB-A5SO 
       19.82        10.82 

$`SATB1 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-A44G TCGA-F2-A44H TCGA-FB-A4P5 
       10.98         9.70        11.84         5.03        19.27         0.13 
TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR TCGA-FZ-5920 TCGA-FZ-5922 TCGA-FZ-5923 
        2.47         0.03         5.46         2.01        36.20        20.81 
TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-7919 
       12.89         7.66        13.02         7.89         0.92         0.66 
TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-8001 TCGA-HZ-8002 
        0.13         0.26        12.13        11.87         0.62         0.79 
TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H 
        0.69         3.95         0.16         2.99         0.76         0.95 
TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 
        6.38         1.51        11.41        49.38         4.77        21.90 
TCGA-IB-7649 TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7888 
       15.35        15.65        27.98         4.04         3.62        43.79 
TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-8126 
       15.81        19.66        16.04         3.85        15.98         0.56 
TCGA-IB-8127 TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG 
       17.16         9.86         7.20        15.12         0.26         1.35 
TCGA-LB-A7SX TCGA-OE-A75W TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E 
        4.18         3.62         8.12        13.68        16.80        14.14 
TCGA-US-A77J 
       18.67 

  SATB1 MUTATED SATB1 WILD-TYPE 
           0.26            0.03 
  SATB1 MUTATED SATB1 WILD-TYPE 
          19.82           49.38 
  SATB1 MUTATED SATB1 WILD-TYPE 
           8.96            7.66 
[1] "0.3 - 19.8 (9.0)" "0.0 - 49.4 (7.7)"
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"SATB1 WILD-TYPE" "SATB1 WILD-TYPE" "SATB1 WILD-TYPE"   "SATB1 MUTATED" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"SATB1 WILD-TYPE" "SATB1 WILD-TYPE" "SATB1 WILD-TYPE"   "SATB1 MUTATED" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
  "SATB1 MUTATED" "SATB1 WILD-TYPE" "SATB1 WILD-TYPE" "SATB1 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"SATB1 WILD-TYPE" "SATB1 WILD-TYPE" "SATB1 WILD-TYPE" "SATB1 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"SATB1 WILD-TYPE" "SATB1 WILD-TYPE" "SATB1 WILD-TYPE" "SATB1 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"SATB1 WILD-TYPE" "SATB1 WILD-TYPE" "SATB1 WILD-TYPE" "SATB1 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"SATB1 WILD-TYPE"   "SATB1 MUTATED" "SATB1 WILD-TYPE" "SATB1 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"SATB1 WILD-TYPE" "SATB1 WILD-TYPE"   "SATB1 MUTATED"   "SATB1 MUTATED" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"SATB1 WILD-TYPE" "SATB1 WILD-TYPE" "SATB1 WILD-TYPE" "SATB1 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"SATB1 WILD-TYPE" "SATB1 WILD-TYPE" "SATB1 WILD-TYPE" "SATB1 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"SATB1 WILD-TYPE" "SATB1 WILD-TYPE" "SATB1 WILD-TYPE"   "SATB1 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"SATB1 WILD-TYPE" "SATB1 WILD-TYPE" "SATB1 WILD-TYPE" "SATB1 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"SATB1 WILD-TYPE" "SATB1 WILD-TYPE" "SATB1 WILD-TYPE" "SATB1 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"SATB1 WILD-TYPE" "SATB1 WILD-TYPE" "SATB1 WILD-TYPE" "SATB1 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
  "SATB1 MUTATED" "SATB1 WILD-TYPE" "SATB1 WILD-TYPE" "SATB1 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"SATB1 WILD-TYPE" "SATB1 WILD-TYPE" "SATB1 WILD-TYPE" "SATB1 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"SATB1 WILD-TYPE" "SATB1 WILD-TYPE" "SATB1 WILD-TYPE" "SATB1 WILD-TYPE" 
     TCGA-US-A77J 
"SATB1 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"SATB1 WILD-TYPE" "SATB1 WILD-TYPE" "SATB1 WILD-TYPE"   "SATB1 MUTATED" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"SATB1 WILD-TYPE" "SATB1 WILD-TYPE" "SATB1 WILD-TYPE"   "SATB1 MUTATED" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
  "SATB1 MUTATED" "SATB1 WILD-TYPE" "SATB1 WILD-TYPE" "SATB1 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"SATB1 WILD-TYPE" "SATB1 WILD-TYPE" "SATB1 WILD-TYPE" "SATB1 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"SATB1 WILD-TYPE" "SATB1 WILD-TYPE" "SATB1 WILD-TYPE" "SATB1 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"SATB1 WILD-TYPE" "SATB1 WILD-TYPE" "SATB1 WILD-TYPE" "SATB1 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"SATB1 WILD-TYPE"   "SATB1 MUTATED" "SATB1 WILD-TYPE" "SATB1 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"SATB1 WILD-TYPE" "SATB1 WILD-TYPE"   "SATB1 MUTATED"   "SATB1 MUTATED" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"SATB1 WILD-TYPE" "SATB1 WILD-TYPE" "SATB1 WILD-TYPE" "SATB1 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"SATB1 WILD-TYPE" "SATB1 WILD-TYPE" "SATB1 WILD-TYPE" "SATB1 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"SATB1 WILD-TYPE" "SATB1 WILD-TYPE" "SATB1 WILD-TYPE"   "SATB1 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"SATB1 WILD-TYPE" "SATB1 WILD-TYPE" "SATB1 WILD-TYPE" "SATB1 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"SATB1 WILD-TYPE" "SATB1 WILD-TYPE" "SATB1 WILD-TYPE" "SATB1 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"SATB1 WILD-TYPE" "SATB1 WILD-TYPE" "SATB1 WILD-TYPE" "SATB1 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
  "SATB1 MUTATED" "SATB1 WILD-TYPE" "SATB1 WILD-TYPE" "SATB1 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"SATB1 WILD-TYPE" "SATB1 WILD-TYPE" "SATB1 WILD-TYPE" "SATB1 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"SATB1 WILD-TYPE" "SATB1 WILD-TYPE" "SATB1 WILD-TYPE" "SATB1 WILD-TYPE" 
     TCGA-US-A77J 
"SATB1 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"SATB1 WILD-TYPE" "SATB1 WILD-TYPE" "SATB1 WILD-TYPE"   "SATB1 MUTATED" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"SATB1 WILD-TYPE" "SATB1 WILD-TYPE" "SATB1 WILD-TYPE"   "SATB1 MUTATED" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
  "SATB1 MUTATED" "SATB1 WILD-TYPE" "SATB1 WILD-TYPE" "SATB1 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"SATB1 WILD-TYPE" "SATB1 WILD-TYPE" "SATB1 WILD-TYPE" "SATB1 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"SATB1 WILD-TYPE" "SATB1 WILD-TYPE" "SATB1 WILD-TYPE" "SATB1 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"SATB1 WILD-TYPE" "SATB1 WILD-TYPE" "SATB1 WILD-TYPE" "SATB1 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"SATB1 WILD-TYPE"   "SATB1 MUTATED" "SATB1 WILD-TYPE" "SATB1 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"SATB1 WILD-TYPE" "SATB1 WILD-TYPE"   "SATB1 MUTATED"   "SATB1 MUTATED" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"SATB1 WILD-TYPE" "SATB1 WILD-TYPE" "SATB1 WILD-TYPE" "SATB1 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"SATB1 WILD-TYPE" "SATB1 WILD-TYPE" "SATB1 WILD-TYPE" "SATB1 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"SATB1 WILD-TYPE" "SATB1 WILD-TYPE" "SATB1 WILD-TYPE"   "SATB1 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"SATB1 WILD-TYPE" "SATB1 WILD-TYPE" "SATB1 WILD-TYPE" "SATB1 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"SATB1 WILD-TYPE" "SATB1 WILD-TYPE" "SATB1 WILD-TYPE" "SATB1 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"SATB1 WILD-TYPE" "SATB1 WILD-TYPE" "SATB1 WILD-TYPE" "SATB1 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
  "SATB1 MUTATED" "SATB1 WILD-TYPE" "SATB1 WILD-TYPE" "SATB1 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"SATB1 WILD-TYPE" "SATB1 WILD-TYPE" "SATB1 WILD-TYPE" "SATB1 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"SATB1 WILD-TYPE" "SATB1 WILD-TYPE" "SATB1 WILD-TYPE" "SATB1 WILD-TYPE" 
     TCGA-US-A77J 
"SATB1 WILD-TYPE" 
[1] "hr=" "1.3"
D350V2, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  SATB1 MUTATED          0        0         1         7         0        0
  SATB1 WILD-TYPE        1        4        10        44         2        3
D350V3, multiclass
                 vv
clus              T1+T2 T3+T4
  SATB1 MUTATED       0     8
  SATB1 WILD-TYPE     6    58
D350V4, multiclass
       clus
vv      SATB1 MUTATED SATB1 WILD-TYPE
  T1+T2             0               6
  T3+T4             8              58
D350V5, binary
                 cls
clus               0  1
  SATB1 MUTATED    1  7
  SATB1 WILD-TYPE 16 47
[1] "tbl2"
                 cls
clus              [,1] [,2]
  SATB1 MUTATED      1    7
  SATB1 WILD-TYPE   16   47
   clus
vv  SATB1 MUTATED SATB1 WILD-TYPE
  0             1              16
  1             7              47
                 vv
clus              M0 M1 MX
  SATB1 MUTATED    4  0  4
  SATB1 WILD-TYPE 35  3 26
D350V6, multiclass
    clus
vv   SATB1 MUTATED SATB1 WILD-TYPE
  M0             4              35
  M1             0               3
  MX             4              26
D350V7, binary
                 cls
clus               0  1
  SATB1 MUTATED    4  4
  SATB1 WILD-TYPE 32 32
[1] "tbl2"
                 cls
clus              [,1] [,2]
  SATB1 MUTATED      4    4
  SATB1 WILD-TYPE   32   32
        clus
vv       SATB1 MUTATED SATB1 WILD-TYPE
  FEMALE             4              32
  MALE               4              32
                 vv
clus              PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  SATB1 MUTATED                                     8
  SATB1 WILD-TYPE                                  57
                 vv
clus              PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  SATB1 MUTATED                                       0
  SATB1 WILD-TYPE                                     4
                 vv
clus              PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  SATB1 MUTATED                                                  0
  SATB1 WILD-TYPE                                                2
D350V8, multiclass
                                                  clus
vv                                                 SATB1 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                          8
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                        0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA             0
                                                  clus
vv                                                 SATB1 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                           57
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                          4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA               2
D350V9, continuous
[1] "Remove cluster labels:" "SATB1 MUTATED"         
clus
  SATB1 MUTATED SATB1 WILD-TYPE 
              2              20 
     TCGA-F2-6880      TCGA-FB-A4P5      TCGA-FB-A5VM      TCGA-FB-A78T 
"SATB1 WILD-TYPE" "SATB1 WILD-TYPE" "SATB1 WILD-TYPE" "SATB1 WILD-TYPE" 
     TCGA-FB-A7DR      TCGA-H6-8124      TCGA-H6-A45N      TCGA-H8-A6C1 
"SATB1 WILD-TYPE" "SATB1 WILD-TYPE" "SATB1 WILD-TYPE" "SATB1 WILD-TYPE" 
     TCGA-IB-7644      TCGA-IB-7649      TCGA-IB-7885      TCGA-IB-7886 
"SATB1 WILD-TYPE" "SATB1 WILD-TYPE" "SATB1 WILD-TYPE" "SATB1 WILD-TYPE" 
     TCGA-IB-7887      TCGA-IB-7891      TCGA-IB-8126      TCGA-IB-8127 
"SATB1 WILD-TYPE" "SATB1 WILD-TYPE" "SATB1 WILD-TYPE" "SATB1 WILD-TYPE" 
     TCGA-IB-A5SS      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"SATB1 WILD-TYPE" "SATB1 WILD-TYPE" "SATB1 WILD-TYPE" "SATB1 WILD-TYPE" 
D350V10, continuous
[1] "Remove cluster labels:" "SATB1 MUTATED"         
clus
  SATB1 MUTATED SATB1 WILD-TYPE 
              2              17 
     TCGA-FB-A4P5      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"SATB1 WILD-TYPE" "SATB1 WILD-TYPE" "SATB1 WILD-TYPE" "SATB1 WILD-TYPE" 
     TCGA-H6-8124      TCGA-H8-A6C1      TCGA-IB-7644      TCGA-IB-7649 
"SATB1 WILD-TYPE" "SATB1 WILD-TYPE" "SATB1 WILD-TYPE" "SATB1 WILD-TYPE" 
     TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7891      TCGA-IB-8126 
"SATB1 WILD-TYPE" "SATB1 WILD-TYPE" "SATB1 WILD-TYPE" "SATB1 WILD-TYPE" 
     TCGA-IB-8127      TCGA-IB-A5SS      TCGA-IB-A6UG      TCGA-LB-A7SX 
"SATB1 WILD-TYPE" "SATB1 WILD-TYPE" "SATB1 WILD-TYPE" "SATB1 WILD-TYPE" 
     TCGA-OE-A75W 
"SATB1 WILD-TYPE" 
                 vv
clus              R0 R1 RX
  SATB1 MUTATED    3  2  1
  SATB1 WILD-TYPE 39 22  1
D350V11, multiclass
    clus
vv   SATB1 MUTATED SATB1 WILD-TYPE
  R0             3              39
  R1             2              22
  RX             1               1
D350V12, continuous

Clustering(351) Variable = SMCR7 MUTATION ANALYSIS
D351V1, survival
                 sevent
clus2              0  1
  SMCR7 MUTATED    6  2
  SMCR7 WILD-TYPE 34 27
  SMCR7 MUTATED SMCR7 WILD-TYPE 
              8              61 
  SMCR7 MUTATED SMCR7 WILD-TYPE 
              2              27 
$`SMCR7 MUTATED`
TCGA-FB-A4P6 TCGA-HZ-7923 TCGA-HZ-7925 TCGA-HZ-8001 TCGA-HZ-8317 TCGA-HZ-A49G 
       11.93         0.26        11.87         0.62         0.53         0.76 
TCGA-IB-7651 TCGA-IB-7887 
       19.82         3.62 

$`SMCR7 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P5 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR TCGA-FZ-5920 
        0.13        12.66         2.47         0.03         5.46         2.01 
TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7289 
       36.20        20.81        12.89         7.66        13.02         7.89 
TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7924 TCGA-HZ-7926 TCGA-HZ-8002 
        0.92         0.66         0.13        12.13         0.26         0.79 
TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49H 
        0.69         3.95         0.92         0.16         2.99         0.95 
TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 
        6.38         1.51        11.41        49.38         4.77        21.90 
TCGA-IB-7649 TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7888 TCGA-IB-7889 
       15.35        15.65        27.98         4.04        43.79        15.81 
TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-8127 
       19.66        16.04         3.85        15.98         0.56        17.16 
TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG 
       10.82         9.86         7.20        15.12         0.26         1.35 
TCGA-LB-A7SX TCGA-OE-A75W TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E 
        4.18         3.62         8.12        13.68        16.80        14.14 
TCGA-US-A77J 
       18.67 

  SMCR7 MUTATED SMCR7 WILD-TYPE 
           0.26            0.03 
  SMCR7 MUTATED SMCR7 WILD-TYPE 
          19.82           49.38 
  SMCR7 MUTATED SMCR7 WILD-TYPE 
           2.19            7.89 
[1] "0.3 - 19.8 (2.2)" "0.0 - 49.4 (7.9)"
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"SMCR7 WILD-TYPE" "SMCR7 WILD-TYPE" "SMCR7 WILD-TYPE" "SMCR7 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"SMCR7 WILD-TYPE" "SMCR7 WILD-TYPE" "SMCR7 WILD-TYPE"   "SMCR7 MUTATED" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"SMCR7 WILD-TYPE" "SMCR7 WILD-TYPE" "SMCR7 WILD-TYPE" "SMCR7 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"SMCR7 WILD-TYPE" "SMCR7 WILD-TYPE" "SMCR7 WILD-TYPE" "SMCR7 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"SMCR7 WILD-TYPE" "SMCR7 WILD-TYPE" "SMCR7 WILD-TYPE" "SMCR7 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"SMCR7 WILD-TYPE" "SMCR7 WILD-TYPE"   "SMCR7 MUTATED" "SMCR7 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
  "SMCR7 MUTATED" "SMCR7 WILD-TYPE"   "SMCR7 MUTATED" "SMCR7 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"SMCR7 WILD-TYPE" "SMCR7 WILD-TYPE" "SMCR7 WILD-TYPE"   "SMCR7 MUTATED" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"SMCR7 WILD-TYPE" "SMCR7 WILD-TYPE"   "SMCR7 MUTATED" "SMCR7 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"SMCR7 WILD-TYPE" "SMCR7 WILD-TYPE" "SMCR7 WILD-TYPE" "SMCR7 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"SMCR7 WILD-TYPE" "SMCR7 WILD-TYPE" "SMCR7 WILD-TYPE"   "SMCR7 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"SMCR7 WILD-TYPE" "SMCR7 WILD-TYPE" "SMCR7 WILD-TYPE"   "SMCR7 MUTATED" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"SMCR7 WILD-TYPE" "SMCR7 WILD-TYPE" "SMCR7 WILD-TYPE" "SMCR7 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"SMCR7 WILD-TYPE" "SMCR7 WILD-TYPE" "SMCR7 WILD-TYPE" "SMCR7 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"SMCR7 WILD-TYPE" "SMCR7 WILD-TYPE" "SMCR7 WILD-TYPE" "SMCR7 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"SMCR7 WILD-TYPE" "SMCR7 WILD-TYPE" "SMCR7 WILD-TYPE" "SMCR7 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"SMCR7 WILD-TYPE" "SMCR7 WILD-TYPE" "SMCR7 WILD-TYPE" "SMCR7 WILD-TYPE" 
     TCGA-US-A77J 
"SMCR7 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"SMCR7 WILD-TYPE" "SMCR7 WILD-TYPE" "SMCR7 WILD-TYPE" "SMCR7 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"SMCR7 WILD-TYPE" "SMCR7 WILD-TYPE" "SMCR7 WILD-TYPE"   "SMCR7 MUTATED" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"SMCR7 WILD-TYPE" "SMCR7 WILD-TYPE" "SMCR7 WILD-TYPE" "SMCR7 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"SMCR7 WILD-TYPE" "SMCR7 WILD-TYPE" "SMCR7 WILD-TYPE" "SMCR7 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"SMCR7 WILD-TYPE" "SMCR7 WILD-TYPE" "SMCR7 WILD-TYPE" "SMCR7 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"SMCR7 WILD-TYPE" "SMCR7 WILD-TYPE"   "SMCR7 MUTATED" "SMCR7 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
  "SMCR7 MUTATED" "SMCR7 WILD-TYPE"   "SMCR7 MUTATED" "SMCR7 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"SMCR7 WILD-TYPE" "SMCR7 WILD-TYPE" "SMCR7 WILD-TYPE"   "SMCR7 MUTATED" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"SMCR7 WILD-TYPE" "SMCR7 WILD-TYPE"   "SMCR7 MUTATED" "SMCR7 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"SMCR7 WILD-TYPE" "SMCR7 WILD-TYPE" "SMCR7 WILD-TYPE" "SMCR7 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"SMCR7 WILD-TYPE" "SMCR7 WILD-TYPE" "SMCR7 WILD-TYPE"   "SMCR7 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"SMCR7 WILD-TYPE" "SMCR7 WILD-TYPE" "SMCR7 WILD-TYPE"   "SMCR7 MUTATED" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"SMCR7 WILD-TYPE" "SMCR7 WILD-TYPE" "SMCR7 WILD-TYPE" "SMCR7 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"SMCR7 WILD-TYPE" "SMCR7 WILD-TYPE" "SMCR7 WILD-TYPE" "SMCR7 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"SMCR7 WILD-TYPE" "SMCR7 WILD-TYPE" "SMCR7 WILD-TYPE" "SMCR7 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"SMCR7 WILD-TYPE" "SMCR7 WILD-TYPE" "SMCR7 WILD-TYPE" "SMCR7 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"SMCR7 WILD-TYPE" "SMCR7 WILD-TYPE" "SMCR7 WILD-TYPE" "SMCR7 WILD-TYPE" 
     TCGA-US-A77J 
"SMCR7 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"SMCR7 WILD-TYPE" "SMCR7 WILD-TYPE" "SMCR7 WILD-TYPE" "SMCR7 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"SMCR7 WILD-TYPE" "SMCR7 WILD-TYPE" "SMCR7 WILD-TYPE"   "SMCR7 MUTATED" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"SMCR7 WILD-TYPE" "SMCR7 WILD-TYPE" "SMCR7 WILD-TYPE" "SMCR7 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"SMCR7 WILD-TYPE" "SMCR7 WILD-TYPE" "SMCR7 WILD-TYPE" "SMCR7 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"SMCR7 WILD-TYPE" "SMCR7 WILD-TYPE" "SMCR7 WILD-TYPE" "SMCR7 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"SMCR7 WILD-TYPE" "SMCR7 WILD-TYPE"   "SMCR7 MUTATED" "SMCR7 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
  "SMCR7 MUTATED" "SMCR7 WILD-TYPE"   "SMCR7 MUTATED" "SMCR7 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"SMCR7 WILD-TYPE" "SMCR7 WILD-TYPE" "SMCR7 WILD-TYPE"   "SMCR7 MUTATED" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"SMCR7 WILD-TYPE" "SMCR7 WILD-TYPE"   "SMCR7 MUTATED" "SMCR7 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"SMCR7 WILD-TYPE" "SMCR7 WILD-TYPE" "SMCR7 WILD-TYPE" "SMCR7 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"SMCR7 WILD-TYPE" "SMCR7 WILD-TYPE" "SMCR7 WILD-TYPE"   "SMCR7 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"SMCR7 WILD-TYPE" "SMCR7 WILD-TYPE" "SMCR7 WILD-TYPE"   "SMCR7 MUTATED" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"SMCR7 WILD-TYPE" "SMCR7 WILD-TYPE" "SMCR7 WILD-TYPE" "SMCR7 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"SMCR7 WILD-TYPE" "SMCR7 WILD-TYPE" "SMCR7 WILD-TYPE" "SMCR7 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"SMCR7 WILD-TYPE" "SMCR7 WILD-TYPE" "SMCR7 WILD-TYPE" "SMCR7 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"SMCR7 WILD-TYPE" "SMCR7 WILD-TYPE" "SMCR7 WILD-TYPE" "SMCR7 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"SMCR7 WILD-TYPE" "SMCR7 WILD-TYPE" "SMCR7 WILD-TYPE" "SMCR7 WILD-TYPE" 
     TCGA-US-A77J 
"SMCR7 WILD-TYPE" 
[1] "hr=" "1"  
D351V2, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  SMCR7 MUTATED          0        0         1         6         1        0
  SMCR7 WILD-TYPE        1        4        10        45         1        3
D351V3, multiclass
                 vv
clus              T1+T2 T3+T4
  SMCR7 MUTATED       1     7
  SMCR7 WILD-TYPE     5    59
D351V4, multiclass
       clus
vv      SMCR7 MUTATED SMCR7 WILD-TYPE
  T1+T2             1               5
  T3+T4             7              59
D351V5, binary
                 cls
clus               0  1
  SMCR7 MUTATED    2  6
  SMCR7 WILD-TYPE 15 48
[1] "tbl2"
                 cls
clus              [,1] [,2]
  SMCR7 MUTATED      2    6
  SMCR7 WILD-TYPE   15   48
   clus
vv  SMCR7 MUTATED SMCR7 WILD-TYPE
  0             2              15
  1             6              48
                 vv
clus              M0 M1 MX
  SMCR7 MUTATED    2  0  6
  SMCR7 WILD-TYPE 37  3 24
D351V6, multiclass
    clus
vv   SMCR7 MUTATED SMCR7 WILD-TYPE
  M0             2              37
  M1             0               3
  MX             6              24
D351V7, binary
                 cls
clus               0  1
  SMCR7 MUTATED    4  4
  SMCR7 WILD-TYPE 32 32
[1] "tbl2"
                 cls
clus              [,1] [,2]
  SMCR7 MUTATED      4    4
  SMCR7 WILD-TYPE   32   32
        clus
vv       SMCR7 MUTATED SMCR7 WILD-TYPE
  FEMALE             4              32
  MALE               4              32
                 vv
clus              PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  SMCR7 MUTATED                                     8
  SMCR7 WILD-TYPE                                  57
                 vv
clus              PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  SMCR7 MUTATED                                       0
  SMCR7 WILD-TYPE                                     4
                 vv
clus              PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  SMCR7 MUTATED                                                  0
  SMCR7 WILD-TYPE                                                2
D351V8, multiclass
                                                  clus
vv                                                 SMCR7 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                          8
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                        0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA             0
                                                  clus
vv                                                 SMCR7 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                           57
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                          4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA               2
D351V9, continuous
D351V10, continuous
[1] "Remove cluster labels:" "SMCR7 MUTATED"         
clus
  SMCR7 MUTATED SMCR7 WILD-TYPE 
              2              17 
     TCGA-FB-A4P5      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"SMCR7 WILD-TYPE" "SMCR7 WILD-TYPE" "SMCR7 WILD-TYPE" "SMCR7 WILD-TYPE" 
     TCGA-H6-8124      TCGA-H8-A6C1      TCGA-IB-7644      TCGA-IB-7649 
"SMCR7 WILD-TYPE" "SMCR7 WILD-TYPE" "SMCR7 WILD-TYPE" "SMCR7 WILD-TYPE" 
     TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7891      TCGA-IB-8126 
"SMCR7 WILD-TYPE" "SMCR7 WILD-TYPE" "SMCR7 WILD-TYPE" "SMCR7 WILD-TYPE" 
     TCGA-IB-8127      TCGA-IB-A5SS      TCGA-IB-A6UG      TCGA-LB-A7SX 
"SMCR7 WILD-TYPE" "SMCR7 WILD-TYPE" "SMCR7 WILD-TYPE" "SMCR7 WILD-TYPE" 
     TCGA-OE-A75W 
"SMCR7 WILD-TYPE" 
                 vv
clus              R0 R1 RX
  SMCR7 MUTATED    4  3  0
  SMCR7 WILD-TYPE 38 21  2
D351V11, multiclass
    clus
vv   SMCR7 MUTATED SMCR7 WILD-TYPE
  R0             4              38
  R1             3              21
  RX             0               2
D351V12, continuous

Clustering(352) Variable = ZNF548 MUTATION ANALYSIS
D352V1, survival
                  sevent
clus2               0  1
  ZNF548 MUTATED    3  2
  ZNF548 WILD-TYPE 37 27
  ZNF548 MUTATED ZNF548 WILD-TYPE 
               5               64 
  ZNF548 MUTATED ZNF548 WILD-TYPE 
               2               27 
$`ZNF548 MUTATED`
TCGA-F2-A44G TCGA-F2-A44H TCGA-HZ-8317 TCGA-IB-7651 TCGA-PZ-A5RE 
        5.03        19.27         0.53        19.82         8.12 

$`ZNF548 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-FB-A4P5 TCGA-FB-A4P6 
       10.98         9.70        11.84         7.10         0.13        11.93 
TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR TCGA-FZ-5920 TCGA-FZ-5922 
       12.66         2.47         0.03         5.46         2.01        36.20 
TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7289 TCGA-HZ-7918 
       20.81        12.89         7.66        13.02         7.89         0.92 
TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 
        0.66         0.13         0.26        12.13        11.87         0.26 
TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8636 
        0.62         0.79         0.69         3.95         0.92         0.16 
TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 
        2.99         0.76         0.95         6.38         1.51        11.41 
TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7652 TCGA-IB-7885 
       49.38         4.77        21.90        15.35        15.65        27.98 
TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 
        4.04         3.62        43.79        15.81        19.66        16.04 
TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP 
        3.85        15.98         0.56        17.16        10.82         9.86 
TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W 
        7.20        15.12         0.26         1.35         4.18         3.62 
TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
       13.68        16.80        14.14        18.67 

  ZNF548 MUTATED ZNF548 WILD-TYPE 
            0.53             0.03 
  ZNF548 MUTATED ZNF548 WILD-TYPE 
           19.82            49.38 
  ZNF548 MUTATED ZNF548 WILD-TYPE 
            8.12             7.43 
[1] "0.5 - 19.8 (8.1)" "0.0 - 49.4 (7.4)"
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
"ZNF548 WILD-TYPE" "ZNF548 WILD-TYPE" "ZNF548 WILD-TYPE" "ZNF548 WILD-TYPE" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
  "ZNF548 MUTATED"   "ZNF548 MUTATED" "ZNF548 WILD-TYPE" "ZNF548 WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
"ZNF548 WILD-TYPE" "ZNF548 WILD-TYPE" "ZNF548 WILD-TYPE" "ZNF548 WILD-TYPE" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"ZNF548 WILD-TYPE" "ZNF548 WILD-TYPE" "ZNF548 WILD-TYPE" "ZNF548 WILD-TYPE" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
"ZNF548 WILD-TYPE" "ZNF548 WILD-TYPE" "ZNF548 WILD-TYPE" "ZNF548 WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
"ZNF548 WILD-TYPE" "ZNF548 WILD-TYPE" "ZNF548 WILD-TYPE" "ZNF548 WILD-TYPE" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"ZNF548 WILD-TYPE" "ZNF548 WILD-TYPE" "ZNF548 WILD-TYPE" "ZNF548 WILD-TYPE" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
"ZNF548 WILD-TYPE" "ZNF548 WILD-TYPE" "ZNF548 WILD-TYPE"   "ZNF548 MUTATED" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
"ZNF548 WILD-TYPE" "ZNF548 WILD-TYPE" "ZNF548 WILD-TYPE" "ZNF548 WILD-TYPE" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
"ZNF548 WILD-TYPE" "ZNF548 WILD-TYPE" "ZNF548 WILD-TYPE" "ZNF548 WILD-TYPE" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
"ZNF548 WILD-TYPE" "ZNF548 WILD-TYPE" "ZNF548 WILD-TYPE"   "ZNF548 MUTATED" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
"ZNF548 WILD-TYPE" "ZNF548 WILD-TYPE" "ZNF548 WILD-TYPE" "ZNF548 WILD-TYPE" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
"ZNF548 WILD-TYPE" "ZNF548 WILD-TYPE" "ZNF548 WILD-TYPE" "ZNF548 WILD-TYPE" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
"ZNF548 WILD-TYPE" "ZNF548 WILD-TYPE" "ZNF548 WILD-TYPE" "ZNF548 WILD-TYPE" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"ZNF548 WILD-TYPE" "ZNF548 WILD-TYPE" "ZNF548 WILD-TYPE" "ZNF548 WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"ZNF548 WILD-TYPE" "ZNF548 WILD-TYPE" "ZNF548 WILD-TYPE" "ZNF548 WILD-TYPE" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
  "ZNF548 MUTATED" "ZNF548 WILD-TYPE" "ZNF548 WILD-TYPE" "ZNF548 WILD-TYPE" 
      TCGA-US-A77J 
"ZNF548 WILD-TYPE" 
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
"ZNF548 WILD-TYPE" "ZNF548 WILD-TYPE" "ZNF548 WILD-TYPE" "ZNF548 WILD-TYPE" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
  "ZNF548 MUTATED"   "ZNF548 MUTATED" "ZNF548 WILD-TYPE" "ZNF548 WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
"ZNF548 WILD-TYPE" "ZNF548 WILD-TYPE" "ZNF548 WILD-TYPE" "ZNF548 WILD-TYPE" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"ZNF548 WILD-TYPE" "ZNF548 WILD-TYPE" "ZNF548 WILD-TYPE" "ZNF548 WILD-TYPE" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
"ZNF548 WILD-TYPE" "ZNF548 WILD-TYPE" "ZNF548 WILD-TYPE" "ZNF548 WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
"ZNF548 WILD-TYPE" "ZNF548 WILD-TYPE" "ZNF548 WILD-TYPE" "ZNF548 WILD-TYPE" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"ZNF548 WILD-TYPE" "ZNF548 WILD-TYPE" "ZNF548 WILD-TYPE" "ZNF548 WILD-TYPE" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
"ZNF548 WILD-TYPE" "ZNF548 WILD-TYPE" "ZNF548 WILD-TYPE"   "ZNF548 MUTATED" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
"ZNF548 WILD-TYPE" "ZNF548 WILD-TYPE" "ZNF548 WILD-TYPE" "ZNF548 WILD-TYPE" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
"ZNF548 WILD-TYPE" "ZNF548 WILD-TYPE" "ZNF548 WILD-TYPE" "ZNF548 WILD-TYPE" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
"ZNF548 WILD-TYPE" "ZNF548 WILD-TYPE" "ZNF548 WILD-TYPE"   "ZNF548 MUTATED" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
"ZNF548 WILD-TYPE" "ZNF548 WILD-TYPE" "ZNF548 WILD-TYPE" "ZNF548 WILD-TYPE" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
"ZNF548 WILD-TYPE" "ZNF548 WILD-TYPE" "ZNF548 WILD-TYPE" "ZNF548 WILD-TYPE" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
"ZNF548 WILD-TYPE" "ZNF548 WILD-TYPE" "ZNF548 WILD-TYPE" "ZNF548 WILD-TYPE" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"ZNF548 WILD-TYPE" "ZNF548 WILD-TYPE" "ZNF548 WILD-TYPE" "ZNF548 WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"ZNF548 WILD-TYPE" "ZNF548 WILD-TYPE" "ZNF548 WILD-TYPE" "ZNF548 WILD-TYPE" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
  "ZNF548 MUTATED" "ZNF548 WILD-TYPE" "ZNF548 WILD-TYPE" "ZNF548 WILD-TYPE" 
      TCGA-US-A77J 
"ZNF548 WILD-TYPE" 
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
"ZNF548 WILD-TYPE" "ZNF548 WILD-TYPE" "ZNF548 WILD-TYPE" "ZNF548 WILD-TYPE" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
  "ZNF548 MUTATED"   "ZNF548 MUTATED" "ZNF548 WILD-TYPE" "ZNF548 WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
"ZNF548 WILD-TYPE" "ZNF548 WILD-TYPE" "ZNF548 WILD-TYPE" "ZNF548 WILD-TYPE" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"ZNF548 WILD-TYPE" "ZNF548 WILD-TYPE" "ZNF548 WILD-TYPE" "ZNF548 WILD-TYPE" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
"ZNF548 WILD-TYPE" "ZNF548 WILD-TYPE" "ZNF548 WILD-TYPE" "ZNF548 WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
"ZNF548 WILD-TYPE" "ZNF548 WILD-TYPE" "ZNF548 WILD-TYPE" "ZNF548 WILD-TYPE" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"ZNF548 WILD-TYPE" "ZNF548 WILD-TYPE" "ZNF548 WILD-TYPE" "ZNF548 WILD-TYPE" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
"ZNF548 WILD-TYPE" "ZNF548 WILD-TYPE" "ZNF548 WILD-TYPE"   "ZNF548 MUTATED" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
"ZNF548 WILD-TYPE" "ZNF548 WILD-TYPE" "ZNF548 WILD-TYPE" "ZNF548 WILD-TYPE" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
"ZNF548 WILD-TYPE" "ZNF548 WILD-TYPE" "ZNF548 WILD-TYPE" "ZNF548 WILD-TYPE" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
"ZNF548 WILD-TYPE" "ZNF548 WILD-TYPE" "ZNF548 WILD-TYPE"   "ZNF548 MUTATED" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
"ZNF548 WILD-TYPE" "ZNF548 WILD-TYPE" "ZNF548 WILD-TYPE" "ZNF548 WILD-TYPE" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
"ZNF548 WILD-TYPE" "ZNF548 WILD-TYPE" "ZNF548 WILD-TYPE" "ZNF548 WILD-TYPE" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
"ZNF548 WILD-TYPE" "ZNF548 WILD-TYPE" "ZNF548 WILD-TYPE" "ZNF548 WILD-TYPE" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"ZNF548 WILD-TYPE" "ZNF548 WILD-TYPE" "ZNF548 WILD-TYPE" "ZNF548 WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"ZNF548 WILD-TYPE" "ZNF548 WILD-TYPE" "ZNF548 WILD-TYPE" "ZNF548 WILD-TYPE" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
  "ZNF548 MUTATED" "ZNF548 WILD-TYPE" "ZNF548 WILD-TYPE" "ZNF548 WILD-TYPE" 
      TCGA-US-A77J 
"ZNF548 WILD-TYPE" 
[1] "hr=" "1.3"
D352V2, continuous
                  vv
clus               STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  ZNF548 MUTATED          0        1         1         4         0        0
  ZNF548 WILD-TYPE        1        3        10        47         2        3
D352V3, multiclass
                  vv
clus               T1+T2 T3+T4
  ZNF548 MUTATED       1     5
  ZNF548 WILD-TYPE     5    61
D352V4, multiclass
       clus
vv      ZNF548 MUTATED ZNF548 WILD-TYPE
  T1+T2              1                5
  T3+T4              5               61
D352V5, binary
                  cls
clus                0  1
  ZNF548 MUTATED    2  4
  ZNF548 WILD-TYPE 15 50
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ZNF548 MUTATED      2    4
  ZNF548 WILD-TYPE   15   50
   clus
vv  ZNF548 MUTATED ZNF548 WILD-TYPE
  0              2               15
  1              4               50
                  vv
clus               M0 M1 MX
  ZNF548 MUTATED    3  0  3
  ZNF548 WILD-TYPE 36  3 27
D352V6, multiclass
    clus
vv   ZNF548 MUTATED ZNF548 WILD-TYPE
  M0              3               36
  M1              0                3
  MX              3               27
D352V7, binary
                  cls
clus                0  1
  ZNF548 MUTATED    4  2
  ZNF548 WILD-TYPE 32 34
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ZNF548 MUTATED      4    2
  ZNF548 WILD-TYPE   32   34
        clus
vv       ZNF548 MUTATED ZNF548 WILD-TYPE
  FEMALE              4               32
  MALE                2               34
                  vv
clus               PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  ZNF548 MUTATED                                     6
  ZNF548 WILD-TYPE                                  59
                  vv
clus               PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  ZNF548 MUTATED                                       0
  ZNF548 WILD-TYPE                                     4
                  vv
clus               PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  ZNF548 MUTATED                                                  0
  ZNF548 WILD-TYPE                                                2
D352V8, multiclass
                                                  clus
vv                                                 ZNF548 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                           6
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                         0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA              0
                                                  clus
vv                                                 ZNF548 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                            59
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                           4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                2
D352V9, continuous
[1] "Remove cluster labels:" "ZNF548 MUTATED"        
clus
  ZNF548 MUTATED ZNF548 WILD-TYPE 
               1               21 
      TCGA-F2-6880       TCGA-FB-A4P5       TCGA-FB-A4P6       TCGA-FB-A5VM 
"ZNF548 WILD-TYPE" "ZNF548 WILD-TYPE" "ZNF548 WILD-TYPE" "ZNF548 WILD-TYPE" 
      TCGA-FB-A78T       TCGA-FB-A7DR       TCGA-H6-8124       TCGA-H6-A45N 
"ZNF548 WILD-TYPE" "ZNF548 WILD-TYPE" "ZNF548 WILD-TYPE" "ZNF548 WILD-TYPE" 
      TCGA-H8-A6C1       TCGA-IB-7644       TCGA-IB-7649       TCGA-IB-7885 
"ZNF548 WILD-TYPE" "ZNF548 WILD-TYPE" "ZNF548 WILD-TYPE" "ZNF548 WILD-TYPE" 
      TCGA-IB-7886       TCGA-IB-7887       TCGA-IB-7891       TCGA-IB-8126 
"ZNF548 WILD-TYPE" "ZNF548 WILD-TYPE" "ZNF548 WILD-TYPE" "ZNF548 WILD-TYPE" 
      TCGA-IB-8127       TCGA-IB-A5SS       TCGA-IB-A6UG       TCGA-LB-A7SX 
"ZNF548 WILD-TYPE" "ZNF548 WILD-TYPE" "ZNF548 WILD-TYPE" "ZNF548 WILD-TYPE" 
      TCGA-OE-A75W 
"ZNF548 WILD-TYPE" 
D352V10, continuous
[1] "Remove cluster labels:" "ZNF548 MUTATED"        
clus
  ZNF548 MUTATED ZNF548 WILD-TYPE 
               1               18 
      TCGA-FB-A4P5       TCGA-FB-A4P6       TCGA-FB-A5VM       TCGA-FB-A78T 
"ZNF548 WILD-TYPE" "ZNF548 WILD-TYPE" "ZNF548 WILD-TYPE" "ZNF548 WILD-TYPE" 
      TCGA-FB-A7DR       TCGA-H6-8124       TCGA-H8-A6C1       TCGA-IB-7644 
"ZNF548 WILD-TYPE" "ZNF548 WILD-TYPE" "ZNF548 WILD-TYPE" "ZNF548 WILD-TYPE" 
      TCGA-IB-7649       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7891 
"ZNF548 WILD-TYPE" "ZNF548 WILD-TYPE" "ZNF548 WILD-TYPE" "ZNF548 WILD-TYPE" 
      TCGA-IB-8126       TCGA-IB-8127       TCGA-IB-A5SS       TCGA-IB-A6UG 
"ZNF548 WILD-TYPE" "ZNF548 WILD-TYPE" "ZNF548 WILD-TYPE" "ZNF548 WILD-TYPE" 
      TCGA-LB-A7SX       TCGA-OE-A75W 
"ZNF548 WILD-TYPE" "ZNF548 WILD-TYPE" 
                  vv
clus               R0 R1 RX
  ZNF548 MUTATED    3  2  0
  ZNF548 WILD-TYPE 39 22  2
D352V11, multiclass
    clus
vv   ZNF548 MUTATED ZNF548 WILD-TYPE
  R0              3               39
  R1              2               22
  RX              0                2
D352V12, continuous

Clustering(353) Variable = DHX36 MUTATION ANALYSIS
D353V1, survival
                 sevent
clus2              0  1
  DHX36 MUTATED    4  4
  DHX36 WILD-TYPE 36 25
  DHX36 MUTATED DHX36 WILD-TYPE 
              8              61 
  DHX36 MUTATED DHX36 WILD-TYPE 
              4              25 
$`DHX36 MUTATED`
TCGA-HZ-7289 TCGA-HZ-A49H TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7651 TCGA-IB-7888 
        7.89         0.95        21.90        15.35        19.82        43.79 
TCGA-IB-7891 TCGA-IB-8127 
       16.04        17.16 

$`DHX36 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P5 TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR 
        0.13        11.93        12.66         2.47         0.03         5.46 
TCGA-FZ-5920 TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 
        2.01        36.20        20.81        12.89         7.66        13.02 
TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 
        0.92         0.66         0.13         0.26        12.13        11.87 
TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 
        0.26         0.62         0.79         0.69         3.95         0.92 
TCGA-HZ-8317 TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A4BH TCGA-HZ-A4BK 
        0.53         0.16         2.99         0.76         6.38         1.51 
TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7886 
       11.41        49.38         4.77        15.65        27.98         4.04 
TCGA-IB-7887 TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-8126 
        3.62        15.81        19.66         3.85        15.98         0.56 
TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG 
       10.82         9.86         7.20        15.12         0.26         1.35 
TCGA-LB-A7SX TCGA-OE-A75W TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E 
        4.18         3.62         8.12        13.68        16.80        14.14 
TCGA-US-A77J 
       18.67 

  DHX36 MUTATED DHX36 WILD-TYPE 
           0.95            0.03 
  DHX36 MUTATED DHX36 WILD-TYPE 
          43.79           49.38 
  DHX36 MUTATED DHX36 WILD-TYPE 
          16.60            6.38 
[1] "0.9 - 43.8 (16.6)" "0.0 - 49.4 (6.4)" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"DHX36 WILD-TYPE" "DHX36 WILD-TYPE"   "DHX36 MUTATED" "DHX36 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE"   "DHX36 MUTATED" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"DHX36 WILD-TYPE"   "DHX36 MUTATED"   "DHX36 MUTATED"   "DHX36 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
  "DHX36 MUTATED" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE"   "DHX36 MUTATED" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE"   "DHX36 MUTATED" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" 
     TCGA-US-A77J 
"DHX36 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"DHX36 WILD-TYPE" "DHX36 WILD-TYPE"   "DHX36 MUTATED" "DHX36 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE"   "DHX36 MUTATED" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"DHX36 WILD-TYPE"   "DHX36 MUTATED"   "DHX36 MUTATED"   "DHX36 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
  "DHX36 MUTATED" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE"   "DHX36 MUTATED" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE"   "DHX36 MUTATED" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" 
     TCGA-US-A77J 
"DHX36 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"DHX36 WILD-TYPE" "DHX36 WILD-TYPE"   "DHX36 MUTATED" "DHX36 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE"   "DHX36 MUTATED" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"DHX36 WILD-TYPE"   "DHX36 MUTATED"   "DHX36 MUTATED"   "DHX36 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
  "DHX36 MUTATED" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE"   "DHX36 MUTATED" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE"   "DHX36 MUTATED" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" "DHX36 WILD-TYPE" 
     TCGA-US-A77J 
"DHX36 WILD-TYPE" 
[1] "hr=" "2.2"
D353V2, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  DHX36 MUTATED          0        0         1         7         0        0
  DHX36 WILD-TYPE        1        4        10        44         2        3
D353V3, multiclass
                 vv
clus              T1+T2 T3+T4
  DHX36 MUTATED       0     8
  DHX36 WILD-TYPE     6    58
D353V4, multiclass
       clus
vv      DHX36 MUTATED DHX36 WILD-TYPE
  T1+T2             0               6
  T3+T4             8              58
D353V5, binary
                 cls
clus               0  1
  DHX36 MUTATED    1  7
  DHX36 WILD-TYPE 16 47
[1] "tbl2"
                 cls
clus              [,1] [,2]
  DHX36 MUTATED      1    7
  DHX36 WILD-TYPE   16   47
   clus
vv  DHX36 MUTATED DHX36 WILD-TYPE
  0             1              16
  1             7              47
                 vv
clus              M0 M1 MX
  DHX36 MUTATED    6  0  2
  DHX36 WILD-TYPE 33  3 28
D353V6, multiclass
    clus
vv   DHX36 MUTATED DHX36 WILD-TYPE
  M0             6              33
  M1             0               3
  MX             2              28
D353V7, binary
                 cls
clus               0  1
  DHX36 MUTATED    5  3
  DHX36 WILD-TYPE 31 33
[1] "tbl2"
                 cls
clus              [,1] [,2]
  DHX36 MUTATED      5    3
  DHX36 WILD-TYPE   31   33
        clus
vv       DHX36 MUTATED DHX36 WILD-TYPE
  FEMALE             5              31
  MALE               3              33
                 vv
clus              PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  DHX36 MUTATED                                     7
  DHX36 WILD-TYPE                                  58
                 vv
clus              PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  DHX36 MUTATED                                       1
  DHX36 WILD-TYPE                                     3
                 vv
clus              PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  DHX36 MUTATED                                                  0
  DHX36 WILD-TYPE                                                2
D353V8, multiclass
                                                  clus
vv                                                 DHX36 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                          7
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                        1
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA             0
                                                  clus
vv                                                 DHX36 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                           58
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                          3
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA               2
D353V9, continuous
D353V10, continuous
                 vv
clus              R0 R1 RX
  DHX36 MUTATED    4  3  1
  DHX36 WILD-TYPE 38 21  1
D353V11, multiclass
    clus
vv   DHX36 MUTATED DHX36 WILD-TYPE
  R0             4              38
  R1             3              21
  RX             1               1
D353V12, continuous

Clustering(354) Variable = MMP14 MUTATION ANALYSIS
D354V1, survival
                 sevent
clus2              0  1
  MMP14 MUTATED    4  1
  MMP14 WILD-TYPE 36 28
  MMP14 MUTATED MMP14 WILD-TYPE 
              5              64 
  MMP14 MUTATED MMP14 WILD-TYPE 
              1              28 
$`MMP14 MUTATED`
TCGA-FB-A545 TCGA-FB-A78T TCGA-HZ-7926 TCGA-HZ-8003 TCGA-IB-7651 
       12.66         0.03         0.26         0.69        19.82 

$`MMP14 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P5 TCGA-FB-A4P6 TCGA-FB-A5VM TCGA-FB-A7DR TCGA-FZ-5920 TCGA-FZ-5922 
        0.13        11.93         2.47         5.46         2.01        36.20 
TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7289 TCGA-HZ-7918 
       20.81        12.89         7.66        13.02         7.89         0.92 
TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-8001 
        0.66         0.13         0.26        12.13        11.87         0.62 
TCGA-HZ-8002 TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8636 TCGA-HZ-8638 
        0.79         3.95         0.92         0.53         0.16         2.99 
TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7645 
        0.76         0.95         6.38         1.51        11.41        49.38 
TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7886 
        4.77        21.90        15.35        15.65        27.98         4.04 
TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-7893 
        3.62        43.79        15.81        19.66        16.04         3.85 
TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ 
       15.98         0.56        17.16        10.82         9.86         7.20 
TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W TCGA-PZ-A5RE 
       15.12         0.26         1.35         4.18         3.62         8.12 
TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
       13.68        16.80        14.14        18.67 

  MMP14 MUTATED MMP14 WILD-TYPE 
           0.03            0.13 
  MMP14 MUTATED MMP14 WILD-TYPE 
          19.82           49.38 
  MMP14 MUTATED MMP14 WILD-TYPE 
          0.690           7.775 
[1] "0.0 - 19.8 (0.7)" "0.1 - 49.4 (7.8)"
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"MMP14 WILD-TYPE" "MMP14 WILD-TYPE" "MMP14 WILD-TYPE" "MMP14 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"MMP14 WILD-TYPE" "MMP14 WILD-TYPE" "MMP14 WILD-TYPE" "MMP14 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
  "MMP14 MUTATED" "MMP14 WILD-TYPE"   "MMP14 MUTATED" "MMP14 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"MMP14 WILD-TYPE" "MMP14 WILD-TYPE" "MMP14 WILD-TYPE" "MMP14 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"MMP14 WILD-TYPE" "MMP14 WILD-TYPE" "MMP14 WILD-TYPE" "MMP14 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"MMP14 WILD-TYPE" "MMP14 WILD-TYPE" "MMP14 WILD-TYPE" "MMP14 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"MMP14 WILD-TYPE"   "MMP14 MUTATED" "MMP14 WILD-TYPE" "MMP14 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
  "MMP14 MUTATED" "MMP14 WILD-TYPE" "MMP14 WILD-TYPE" "MMP14 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"MMP14 WILD-TYPE" "MMP14 WILD-TYPE" "MMP14 WILD-TYPE" "MMP14 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"MMP14 WILD-TYPE" "MMP14 WILD-TYPE" "MMP14 WILD-TYPE" "MMP14 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"MMP14 WILD-TYPE" "MMP14 WILD-TYPE" "MMP14 WILD-TYPE"   "MMP14 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"MMP14 WILD-TYPE" "MMP14 WILD-TYPE" "MMP14 WILD-TYPE" "MMP14 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"MMP14 WILD-TYPE" "MMP14 WILD-TYPE" "MMP14 WILD-TYPE" "MMP14 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"MMP14 WILD-TYPE" "MMP14 WILD-TYPE" "MMP14 WILD-TYPE" "MMP14 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"MMP14 WILD-TYPE" "MMP14 WILD-TYPE" "MMP14 WILD-TYPE" "MMP14 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"MMP14 WILD-TYPE" "MMP14 WILD-TYPE" "MMP14 WILD-TYPE" "MMP14 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"MMP14 WILD-TYPE" "MMP14 WILD-TYPE" "MMP14 WILD-TYPE" "MMP14 WILD-TYPE" 
     TCGA-US-A77J 
"MMP14 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"MMP14 WILD-TYPE" "MMP14 WILD-TYPE" "MMP14 WILD-TYPE" "MMP14 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"MMP14 WILD-TYPE" "MMP14 WILD-TYPE" "MMP14 WILD-TYPE" "MMP14 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
  "MMP14 MUTATED" "MMP14 WILD-TYPE"   "MMP14 MUTATED" "MMP14 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"MMP14 WILD-TYPE" "MMP14 WILD-TYPE" "MMP14 WILD-TYPE" "MMP14 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"MMP14 WILD-TYPE" "MMP14 WILD-TYPE" "MMP14 WILD-TYPE" "MMP14 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"MMP14 WILD-TYPE" "MMP14 WILD-TYPE" "MMP14 WILD-TYPE" "MMP14 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"MMP14 WILD-TYPE"   "MMP14 MUTATED" "MMP14 WILD-TYPE" "MMP14 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
  "MMP14 MUTATED" "MMP14 WILD-TYPE" "MMP14 WILD-TYPE" "MMP14 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"MMP14 WILD-TYPE" "MMP14 WILD-TYPE" "MMP14 WILD-TYPE" "MMP14 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"MMP14 WILD-TYPE" "MMP14 WILD-TYPE" "MMP14 WILD-TYPE" "MMP14 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"MMP14 WILD-TYPE" "MMP14 WILD-TYPE" "MMP14 WILD-TYPE"   "MMP14 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"MMP14 WILD-TYPE" "MMP14 WILD-TYPE" "MMP14 WILD-TYPE" "MMP14 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"MMP14 WILD-TYPE" "MMP14 WILD-TYPE" "MMP14 WILD-TYPE" "MMP14 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"MMP14 WILD-TYPE" "MMP14 WILD-TYPE" "MMP14 WILD-TYPE" "MMP14 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"MMP14 WILD-TYPE" "MMP14 WILD-TYPE" "MMP14 WILD-TYPE" "MMP14 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"MMP14 WILD-TYPE" "MMP14 WILD-TYPE" "MMP14 WILD-TYPE" "MMP14 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"MMP14 WILD-TYPE" "MMP14 WILD-TYPE" "MMP14 WILD-TYPE" "MMP14 WILD-TYPE" 
     TCGA-US-A77J 
"MMP14 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"MMP14 WILD-TYPE" "MMP14 WILD-TYPE" "MMP14 WILD-TYPE" "MMP14 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"MMP14 WILD-TYPE" "MMP14 WILD-TYPE" "MMP14 WILD-TYPE" "MMP14 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
  "MMP14 MUTATED" "MMP14 WILD-TYPE"   "MMP14 MUTATED" "MMP14 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"MMP14 WILD-TYPE" "MMP14 WILD-TYPE" "MMP14 WILD-TYPE" "MMP14 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"MMP14 WILD-TYPE" "MMP14 WILD-TYPE" "MMP14 WILD-TYPE" "MMP14 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"MMP14 WILD-TYPE" "MMP14 WILD-TYPE" "MMP14 WILD-TYPE" "MMP14 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"MMP14 WILD-TYPE"   "MMP14 MUTATED" "MMP14 WILD-TYPE" "MMP14 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
  "MMP14 MUTATED" "MMP14 WILD-TYPE" "MMP14 WILD-TYPE" "MMP14 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"MMP14 WILD-TYPE" "MMP14 WILD-TYPE" "MMP14 WILD-TYPE" "MMP14 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"MMP14 WILD-TYPE" "MMP14 WILD-TYPE" "MMP14 WILD-TYPE" "MMP14 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"MMP14 WILD-TYPE" "MMP14 WILD-TYPE" "MMP14 WILD-TYPE"   "MMP14 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"MMP14 WILD-TYPE" "MMP14 WILD-TYPE" "MMP14 WILD-TYPE" "MMP14 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"MMP14 WILD-TYPE" "MMP14 WILD-TYPE" "MMP14 WILD-TYPE" "MMP14 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"MMP14 WILD-TYPE" "MMP14 WILD-TYPE" "MMP14 WILD-TYPE" "MMP14 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"MMP14 WILD-TYPE" "MMP14 WILD-TYPE" "MMP14 WILD-TYPE" "MMP14 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"MMP14 WILD-TYPE" "MMP14 WILD-TYPE" "MMP14 WILD-TYPE" "MMP14 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"MMP14 WILD-TYPE" "MMP14 WILD-TYPE" "MMP14 WILD-TYPE" "MMP14 WILD-TYPE" 
     TCGA-US-A77J 
"MMP14 WILD-TYPE" 
[1] "hr=" "1.6"
D354V2, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  MMP14 MUTATED          0        0         0         6         0        0
  MMP14 WILD-TYPE        1        4        11        45         2        3
D354V3, multiclass
                 vv
clus              T1+T2 T3+T4
  MMP14 MUTATED       0     6
  MMP14 WILD-TYPE     6    60
D354V4, multiclass
       clus
vv      MMP14 MUTATED MMP14 WILD-TYPE
  T1+T2             0               6
  T3+T4             6              60
D354V5, binary
                 cls
clus               0  1
  MMP14 MUTATED    0  6
  MMP14 WILD-TYPE 17 48
[1] "tbl2"
                 cls
clus              [,1] [,2]
  MMP14 MUTATED      0    6
  MMP14 WILD-TYPE   17   48
   clus
vv  MMP14 MUTATED MMP14 WILD-TYPE
  0             0              17
  1             6              48
                 vv
clus              M0 M1 MX
  MMP14 MUTATED    3  0  3
  MMP14 WILD-TYPE 36  3 27
D354V6, multiclass
    clus
vv   MMP14 MUTATED MMP14 WILD-TYPE
  M0             3              36
  M1             0               3
  MX             3              27
D354V7, binary
                 cls
clus               0  1
  MMP14 MUTATED    5  1
  MMP14 WILD-TYPE 31 35
[1] "tbl2"
                 cls
clus              [,1] [,2]
  MMP14 MUTATED      5    1
  MMP14 WILD-TYPE   31   35
        clus
vv       MMP14 MUTATED MMP14 WILD-TYPE
  FEMALE             5              31
  MALE               1              35
                 vv
clus              PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  MMP14 MUTATED                                     6
  MMP14 WILD-TYPE                                  59
                 vv
clus              PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  MMP14 MUTATED                                       0
  MMP14 WILD-TYPE                                     4
                 vv
clus              PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  MMP14 MUTATED                                                  0
  MMP14 WILD-TYPE                                                2
D354V8, multiclass
                                                  clus
vv                                                 MMP14 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                          6
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                        0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA             0
                                                  clus
vv                                                 MMP14 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                           59
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                          4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA               2
D354V9, continuous
[1] "Remove cluster labels:" "MMP14 MUTATED"         
clus
  MMP14 MUTATED MMP14 WILD-TYPE 
              2              20 
     TCGA-F2-6880      TCGA-FB-A4P5      TCGA-FB-A4P6      TCGA-FB-A5VM 
"MMP14 WILD-TYPE" "MMP14 WILD-TYPE" "MMP14 WILD-TYPE" "MMP14 WILD-TYPE" 
     TCGA-FB-A7DR      TCGA-H6-8124      TCGA-H6-A45N      TCGA-H8-A6C1 
"MMP14 WILD-TYPE" "MMP14 WILD-TYPE" "MMP14 WILD-TYPE" "MMP14 WILD-TYPE" 
     TCGA-IB-7644      TCGA-IB-7649      TCGA-IB-7885      TCGA-IB-7886 
"MMP14 WILD-TYPE" "MMP14 WILD-TYPE" "MMP14 WILD-TYPE" "MMP14 WILD-TYPE" 
     TCGA-IB-7887      TCGA-IB-7891      TCGA-IB-8126      TCGA-IB-8127 
"MMP14 WILD-TYPE" "MMP14 WILD-TYPE" "MMP14 WILD-TYPE" "MMP14 WILD-TYPE" 
     TCGA-IB-A5SS      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"MMP14 WILD-TYPE" "MMP14 WILD-TYPE" "MMP14 WILD-TYPE" "MMP14 WILD-TYPE" 
D354V10, continuous
[1] "Remove cluster labels:" "MMP14 MUTATED"         
clus
  MMP14 MUTATED MMP14 WILD-TYPE 
              2              17 
     TCGA-FB-A4P5      TCGA-FB-A4P6      TCGA-FB-A5VM      TCGA-FB-A7DR 
"MMP14 WILD-TYPE" "MMP14 WILD-TYPE" "MMP14 WILD-TYPE" "MMP14 WILD-TYPE" 
     TCGA-H6-8124      TCGA-H8-A6C1      TCGA-IB-7644      TCGA-IB-7649 
"MMP14 WILD-TYPE" "MMP14 WILD-TYPE" "MMP14 WILD-TYPE" "MMP14 WILD-TYPE" 
     TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7891      TCGA-IB-8126 
"MMP14 WILD-TYPE" "MMP14 WILD-TYPE" "MMP14 WILD-TYPE" "MMP14 WILD-TYPE" 
     TCGA-IB-8127      TCGA-IB-A5SS      TCGA-IB-A6UG      TCGA-LB-A7SX 
"MMP14 WILD-TYPE" "MMP14 WILD-TYPE" "MMP14 WILD-TYPE" "MMP14 WILD-TYPE" 
     TCGA-OE-A75W 
"MMP14 WILD-TYPE" 
                 vv
clus              R0 R1 RX
  MMP14 MUTATED    4  0  1
  MMP14 WILD-TYPE 38 24  1
D354V11, multiclass
    clus
vv   MMP14 MUTATED MMP14 WILD-TYPE
  R0             4              38
  R1             0              24
  RX             1               1
D354V12, continuous

Clustering(355) Variable = ZMYND8 MUTATION ANALYSIS
D355V1, survival
                  sevent
clus2               0  1
  ZMYND8 MUTATED    5  2
  ZMYND8 WILD-TYPE 35 27
  ZMYND8 MUTATED ZMYND8 WILD-TYPE 
               7               62 
  ZMYND8 MUTATED ZMYND8 WILD-TYPE 
               2               27 
$`ZMYND8 MUTATED`
TCGA-F2-A44H TCGA-HZ-7919 TCGA-HZ-8315 TCGA-IB-7651 TCGA-IB-7891 TCGA-IB-7893 
       19.27         0.66         0.92        19.82        16.04         3.85 
TCGA-IB-8126 
        0.56 

$`ZMYND8 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-FB-A4P5 
       10.98         9.70        11.84         7.10         5.03         0.13 
TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR TCGA-FZ-5920 
       11.93        12.66         2.47         0.03         5.46         2.01 
TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7289 
       36.20        20.81        12.89         7.66        13.02         7.89 
TCGA-HZ-7918 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 
        0.92         0.13         0.26        12.13        11.87         0.26 
TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8317 TCGA-HZ-8636 
        0.62         0.79         0.69         3.95         0.53         0.16 
TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 
        2.99         0.76         0.95         6.38         1.51        11.41 
TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7652 TCGA-IB-7885 
       49.38         4.77        21.90        15.35        15.65        27.98 
TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7897 
        4.04         3.62        43.79        15.81        19.66        15.98 
TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST 
       17.16        10.82         9.86         7.20        15.12         0.26 
TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 
        1.35         4.18         3.62         8.12        13.68        16.80 
TCGA-US-A77E TCGA-US-A77J 
       14.14        18.67 

  ZMYND8 MUTATED ZMYND8 WILD-TYPE 
            0.56             0.03 
  ZMYND8 MUTATED ZMYND8 WILD-TYPE 
           19.82            49.38 
  ZMYND8 MUTATED ZMYND8 WILD-TYPE 
           3.850            7.775 
[1] "0.6 - 19.8 (3.9)" "0.0 - 49.4 (7.8)"
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
"ZMYND8 WILD-TYPE" "ZMYND8 WILD-TYPE" "ZMYND8 WILD-TYPE" "ZMYND8 WILD-TYPE" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"ZMYND8 WILD-TYPE"   "ZMYND8 MUTATED" "ZMYND8 WILD-TYPE" "ZMYND8 WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
"ZMYND8 WILD-TYPE" "ZMYND8 WILD-TYPE" "ZMYND8 WILD-TYPE" "ZMYND8 WILD-TYPE" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"ZMYND8 WILD-TYPE" "ZMYND8 WILD-TYPE" "ZMYND8 WILD-TYPE" "ZMYND8 WILD-TYPE" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
"ZMYND8 WILD-TYPE" "ZMYND8 WILD-TYPE" "ZMYND8 WILD-TYPE" "ZMYND8 WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
  "ZMYND8 MUTATED" "ZMYND8 WILD-TYPE" "ZMYND8 WILD-TYPE" "ZMYND8 WILD-TYPE" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"ZMYND8 WILD-TYPE" "ZMYND8 WILD-TYPE" "ZMYND8 WILD-TYPE" "ZMYND8 WILD-TYPE" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
"ZMYND8 WILD-TYPE" "ZMYND8 WILD-TYPE"   "ZMYND8 MUTATED" "ZMYND8 WILD-TYPE" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
"ZMYND8 WILD-TYPE" "ZMYND8 WILD-TYPE" "ZMYND8 WILD-TYPE" "ZMYND8 WILD-TYPE" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
"ZMYND8 WILD-TYPE" "ZMYND8 WILD-TYPE" "ZMYND8 WILD-TYPE" "ZMYND8 WILD-TYPE" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
"ZMYND8 WILD-TYPE" "ZMYND8 WILD-TYPE" "ZMYND8 WILD-TYPE"   "ZMYND8 MUTATED" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
"ZMYND8 WILD-TYPE" "ZMYND8 WILD-TYPE" "ZMYND8 WILD-TYPE" "ZMYND8 WILD-TYPE" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
"ZMYND8 WILD-TYPE" "ZMYND8 WILD-TYPE" "ZMYND8 WILD-TYPE"   "ZMYND8 MUTATED" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
  "ZMYND8 MUTATED" "ZMYND8 WILD-TYPE"   "ZMYND8 MUTATED" "ZMYND8 WILD-TYPE" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"ZMYND8 WILD-TYPE" "ZMYND8 WILD-TYPE" "ZMYND8 WILD-TYPE" "ZMYND8 WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"ZMYND8 WILD-TYPE" "ZMYND8 WILD-TYPE" "ZMYND8 WILD-TYPE" "ZMYND8 WILD-TYPE" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
"ZMYND8 WILD-TYPE" "ZMYND8 WILD-TYPE" "ZMYND8 WILD-TYPE" "ZMYND8 WILD-TYPE" 
      TCGA-US-A77J 
"ZMYND8 WILD-TYPE" 
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
"ZMYND8 WILD-TYPE" "ZMYND8 WILD-TYPE" "ZMYND8 WILD-TYPE" "ZMYND8 WILD-TYPE" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"ZMYND8 WILD-TYPE"   "ZMYND8 MUTATED" "ZMYND8 WILD-TYPE" "ZMYND8 WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
"ZMYND8 WILD-TYPE" "ZMYND8 WILD-TYPE" "ZMYND8 WILD-TYPE" "ZMYND8 WILD-TYPE" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"ZMYND8 WILD-TYPE" "ZMYND8 WILD-TYPE" "ZMYND8 WILD-TYPE" "ZMYND8 WILD-TYPE" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
"ZMYND8 WILD-TYPE" "ZMYND8 WILD-TYPE" "ZMYND8 WILD-TYPE" "ZMYND8 WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
  "ZMYND8 MUTATED" "ZMYND8 WILD-TYPE" "ZMYND8 WILD-TYPE" "ZMYND8 WILD-TYPE" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"ZMYND8 WILD-TYPE" "ZMYND8 WILD-TYPE" "ZMYND8 WILD-TYPE" "ZMYND8 WILD-TYPE" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
"ZMYND8 WILD-TYPE" "ZMYND8 WILD-TYPE"   "ZMYND8 MUTATED" "ZMYND8 WILD-TYPE" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
"ZMYND8 WILD-TYPE" "ZMYND8 WILD-TYPE" "ZMYND8 WILD-TYPE" "ZMYND8 WILD-TYPE" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
"ZMYND8 WILD-TYPE" "ZMYND8 WILD-TYPE" "ZMYND8 WILD-TYPE" "ZMYND8 WILD-TYPE" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
"ZMYND8 WILD-TYPE" "ZMYND8 WILD-TYPE" "ZMYND8 WILD-TYPE"   "ZMYND8 MUTATED" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
"ZMYND8 WILD-TYPE" "ZMYND8 WILD-TYPE" "ZMYND8 WILD-TYPE" "ZMYND8 WILD-TYPE" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
"ZMYND8 WILD-TYPE" "ZMYND8 WILD-TYPE" "ZMYND8 WILD-TYPE"   "ZMYND8 MUTATED" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
  "ZMYND8 MUTATED" "ZMYND8 WILD-TYPE"   "ZMYND8 MUTATED" "ZMYND8 WILD-TYPE" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"ZMYND8 WILD-TYPE" "ZMYND8 WILD-TYPE" "ZMYND8 WILD-TYPE" "ZMYND8 WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"ZMYND8 WILD-TYPE" "ZMYND8 WILD-TYPE" "ZMYND8 WILD-TYPE" "ZMYND8 WILD-TYPE" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
"ZMYND8 WILD-TYPE" "ZMYND8 WILD-TYPE" "ZMYND8 WILD-TYPE" "ZMYND8 WILD-TYPE" 
      TCGA-US-A77J 
"ZMYND8 WILD-TYPE" 
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
"ZMYND8 WILD-TYPE" "ZMYND8 WILD-TYPE" "ZMYND8 WILD-TYPE" "ZMYND8 WILD-TYPE" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"ZMYND8 WILD-TYPE"   "ZMYND8 MUTATED" "ZMYND8 WILD-TYPE" "ZMYND8 WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
"ZMYND8 WILD-TYPE" "ZMYND8 WILD-TYPE" "ZMYND8 WILD-TYPE" "ZMYND8 WILD-TYPE" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"ZMYND8 WILD-TYPE" "ZMYND8 WILD-TYPE" "ZMYND8 WILD-TYPE" "ZMYND8 WILD-TYPE" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
"ZMYND8 WILD-TYPE" "ZMYND8 WILD-TYPE" "ZMYND8 WILD-TYPE" "ZMYND8 WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
  "ZMYND8 MUTATED" "ZMYND8 WILD-TYPE" "ZMYND8 WILD-TYPE" "ZMYND8 WILD-TYPE" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"ZMYND8 WILD-TYPE" "ZMYND8 WILD-TYPE" "ZMYND8 WILD-TYPE" "ZMYND8 WILD-TYPE" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
"ZMYND8 WILD-TYPE" "ZMYND8 WILD-TYPE"   "ZMYND8 MUTATED" "ZMYND8 WILD-TYPE" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
"ZMYND8 WILD-TYPE" "ZMYND8 WILD-TYPE" "ZMYND8 WILD-TYPE" "ZMYND8 WILD-TYPE" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
"ZMYND8 WILD-TYPE" "ZMYND8 WILD-TYPE" "ZMYND8 WILD-TYPE" "ZMYND8 WILD-TYPE" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
"ZMYND8 WILD-TYPE" "ZMYND8 WILD-TYPE" "ZMYND8 WILD-TYPE"   "ZMYND8 MUTATED" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
"ZMYND8 WILD-TYPE" "ZMYND8 WILD-TYPE" "ZMYND8 WILD-TYPE" "ZMYND8 WILD-TYPE" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
"ZMYND8 WILD-TYPE" "ZMYND8 WILD-TYPE" "ZMYND8 WILD-TYPE"   "ZMYND8 MUTATED" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
  "ZMYND8 MUTATED" "ZMYND8 WILD-TYPE"   "ZMYND8 MUTATED" "ZMYND8 WILD-TYPE" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"ZMYND8 WILD-TYPE" "ZMYND8 WILD-TYPE" "ZMYND8 WILD-TYPE" "ZMYND8 WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"ZMYND8 WILD-TYPE" "ZMYND8 WILD-TYPE" "ZMYND8 WILD-TYPE" "ZMYND8 WILD-TYPE" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
"ZMYND8 WILD-TYPE" "ZMYND8 WILD-TYPE" "ZMYND8 WILD-TYPE" "ZMYND8 WILD-TYPE" 
      TCGA-US-A77J 
"ZMYND8 WILD-TYPE" 
[1] "hr=" "1.5"
D355V2, continuous
                  vv
clus               STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  ZMYND8 MUTATED          0        0         3         3         1        0
  ZMYND8 WILD-TYPE        1        4         8        48         1        3
D355V3, multiclass
                  vv
clus               T1+T2 T3+T4
  ZMYND8 MUTATED       0     7
  ZMYND8 WILD-TYPE     6    59
D355V4, multiclass
       clus
vv      ZMYND8 MUTATED ZMYND8 WILD-TYPE
  T1+T2              0                6
  T3+T4              7               59
D355V5, binary
                  cls
clus                0  1
  ZMYND8 MUTATED    3  4
  ZMYND8 WILD-TYPE 14 50
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ZMYND8 MUTATED      3    4
  ZMYND8 WILD-TYPE   14   50
   clus
vv  ZMYND8 MUTATED ZMYND8 WILD-TYPE
  0              3               14
  1              4               50
                  vv
clus               M0 M1 MX
  ZMYND8 MUTATED    6  0  1
  ZMYND8 WILD-TYPE 33  3 29
D355V6, multiclass
    clus
vv   ZMYND8 MUTATED ZMYND8 WILD-TYPE
  M0              6               33
  M1              0                3
  MX              1               29
D355V7, binary
                  cls
clus                0  1
  ZMYND8 MUTATED    4  3
  ZMYND8 WILD-TYPE 32 33
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ZMYND8 MUTATED      4    3
  ZMYND8 WILD-TYPE   32   33
        clus
vv       ZMYND8 MUTATED ZMYND8 WILD-TYPE
  FEMALE              4               32
  MALE                3               33
                  vv
clus               PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  ZMYND8 MUTATED                                     7
  ZMYND8 WILD-TYPE                                  58
                  vv
clus               PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  ZMYND8 MUTATED                                       0
  ZMYND8 WILD-TYPE                                     4
                  vv
clus               PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  ZMYND8 MUTATED                                                  0
  ZMYND8 WILD-TYPE                                                2
D355V8, multiclass
                                                  clus
vv                                                 ZMYND8 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                           7
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                         0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA              0
                                                  clus
vv                                                 ZMYND8 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                            58
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                           4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                2
D355V9, continuous
D355V10, continuous
                  vv
clus               R0 R1 RX
  ZMYND8 MUTATED    4  3  0
  ZMYND8 WILD-TYPE 38 21  2
D355V11, multiclass
    clus
vv   ZMYND8 MUTATED ZMYND8 WILD-TYPE
  R0              4               38
  R1              3               21
  RX              0                2
D355V12, continuous

Clustering(356) Variable = TRERF1 MUTATION ANALYSIS
D356V1, survival
                  sevent
clus2               0  1
  TRERF1 MUTATED    2  3
  TRERF1 WILD-TYPE 38 26
  TRERF1 MUTATED TRERF1 WILD-TYPE 
               5               64 
  TRERF1 MUTATED TRERF1 WILD-TYPE 
               3               26 
$`TRERF1 MUTATED`
TCGA-FB-A4P5 TCGA-FB-A5VM TCGA-HZ-A4BK TCGA-IB-7651 TCGA-IB-7886 
        0.13         2.47         1.51        19.82         4.04 

$`TRERF1 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A78T TCGA-FB-A7DR TCGA-FZ-5920 TCGA-FZ-5922 
       11.93        12.66         0.03         5.46         2.01        36.20 
TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7289 TCGA-HZ-7918 
       20.81        12.89         7.66        13.02         7.89         0.92 
TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 
        0.66         0.13         0.26        12.13        11.87         0.26 
TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 
        0.62         0.79         0.69         3.95         0.92         0.53 
TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-IB-7644 
        0.16         2.99         0.76         0.95         6.38        11.41 
TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7652 TCGA-IB-7885 
       49.38         4.77        21.90        15.35        15.65        27.98 
TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-7893 
        3.62        43.79        15.81        19.66        16.04         3.85 
TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ 
       15.98         0.56        17.16        10.82         9.86         7.20 
TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W TCGA-PZ-A5RE 
       15.12         0.26         1.35         4.18         3.62         8.12 
TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
       13.68        16.80        14.14        18.67 

  TRERF1 MUTATED TRERF1 WILD-TYPE 
            0.13             0.03 
  TRERF1 MUTATED TRERF1 WILD-TYPE 
           19.82            49.38 
  TRERF1 MUTATED TRERF1 WILD-TYPE 
           2.470            8.005 
[1] "0.1 - 19.8 (2.5)" "0.0 - 49.4 (8.0)"
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
"TRERF1 WILD-TYPE" "TRERF1 WILD-TYPE" "TRERF1 WILD-TYPE" "TRERF1 WILD-TYPE" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"TRERF1 WILD-TYPE" "TRERF1 WILD-TYPE"   "TRERF1 MUTATED" "TRERF1 WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
"TRERF1 WILD-TYPE"   "TRERF1 MUTATED" "TRERF1 WILD-TYPE" "TRERF1 WILD-TYPE" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"TRERF1 WILD-TYPE" "TRERF1 WILD-TYPE" "TRERF1 WILD-TYPE" "TRERF1 WILD-TYPE" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
"TRERF1 WILD-TYPE" "TRERF1 WILD-TYPE" "TRERF1 WILD-TYPE" "TRERF1 WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
"TRERF1 WILD-TYPE" "TRERF1 WILD-TYPE" "TRERF1 WILD-TYPE" "TRERF1 WILD-TYPE" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"TRERF1 WILD-TYPE" "TRERF1 WILD-TYPE" "TRERF1 WILD-TYPE" "TRERF1 WILD-TYPE" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
"TRERF1 WILD-TYPE" "TRERF1 WILD-TYPE" "TRERF1 WILD-TYPE" "TRERF1 WILD-TYPE" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
"TRERF1 WILD-TYPE" "TRERF1 WILD-TYPE" "TRERF1 WILD-TYPE" "TRERF1 WILD-TYPE" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
"TRERF1 WILD-TYPE"   "TRERF1 MUTATED" "TRERF1 WILD-TYPE" "TRERF1 WILD-TYPE" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
"TRERF1 WILD-TYPE" "TRERF1 WILD-TYPE" "TRERF1 WILD-TYPE"   "TRERF1 MUTATED" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
"TRERF1 WILD-TYPE" "TRERF1 WILD-TYPE"   "TRERF1 MUTATED" "TRERF1 WILD-TYPE" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
"TRERF1 WILD-TYPE" "TRERF1 WILD-TYPE" "TRERF1 WILD-TYPE" "TRERF1 WILD-TYPE" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
"TRERF1 WILD-TYPE" "TRERF1 WILD-TYPE" "TRERF1 WILD-TYPE" "TRERF1 WILD-TYPE" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"TRERF1 WILD-TYPE" "TRERF1 WILD-TYPE" "TRERF1 WILD-TYPE" "TRERF1 WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"TRERF1 WILD-TYPE" "TRERF1 WILD-TYPE" "TRERF1 WILD-TYPE" "TRERF1 WILD-TYPE" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
"TRERF1 WILD-TYPE" "TRERF1 WILD-TYPE" "TRERF1 WILD-TYPE" "TRERF1 WILD-TYPE" 
      TCGA-US-A77J 
"TRERF1 WILD-TYPE" 
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
"TRERF1 WILD-TYPE" "TRERF1 WILD-TYPE" "TRERF1 WILD-TYPE" "TRERF1 WILD-TYPE" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"TRERF1 WILD-TYPE" "TRERF1 WILD-TYPE"   "TRERF1 MUTATED" "TRERF1 WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
"TRERF1 WILD-TYPE"   "TRERF1 MUTATED" "TRERF1 WILD-TYPE" "TRERF1 WILD-TYPE" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"TRERF1 WILD-TYPE" "TRERF1 WILD-TYPE" "TRERF1 WILD-TYPE" "TRERF1 WILD-TYPE" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
"TRERF1 WILD-TYPE" "TRERF1 WILD-TYPE" "TRERF1 WILD-TYPE" "TRERF1 WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
"TRERF1 WILD-TYPE" "TRERF1 WILD-TYPE" "TRERF1 WILD-TYPE" "TRERF1 WILD-TYPE" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"TRERF1 WILD-TYPE" "TRERF1 WILD-TYPE" "TRERF1 WILD-TYPE" "TRERF1 WILD-TYPE" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
"TRERF1 WILD-TYPE" "TRERF1 WILD-TYPE" "TRERF1 WILD-TYPE" "TRERF1 WILD-TYPE" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
"TRERF1 WILD-TYPE" "TRERF1 WILD-TYPE" "TRERF1 WILD-TYPE" "TRERF1 WILD-TYPE" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
"TRERF1 WILD-TYPE"   "TRERF1 MUTATED" "TRERF1 WILD-TYPE" "TRERF1 WILD-TYPE" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
"TRERF1 WILD-TYPE" "TRERF1 WILD-TYPE" "TRERF1 WILD-TYPE"   "TRERF1 MUTATED" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
"TRERF1 WILD-TYPE" "TRERF1 WILD-TYPE"   "TRERF1 MUTATED" "TRERF1 WILD-TYPE" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
"TRERF1 WILD-TYPE" "TRERF1 WILD-TYPE" "TRERF1 WILD-TYPE" "TRERF1 WILD-TYPE" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
"TRERF1 WILD-TYPE" "TRERF1 WILD-TYPE" "TRERF1 WILD-TYPE" "TRERF1 WILD-TYPE" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"TRERF1 WILD-TYPE" "TRERF1 WILD-TYPE" "TRERF1 WILD-TYPE" "TRERF1 WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"TRERF1 WILD-TYPE" "TRERF1 WILD-TYPE" "TRERF1 WILD-TYPE" "TRERF1 WILD-TYPE" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
"TRERF1 WILD-TYPE" "TRERF1 WILD-TYPE" "TRERF1 WILD-TYPE" "TRERF1 WILD-TYPE" 
      TCGA-US-A77J 
"TRERF1 WILD-TYPE" 
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
"TRERF1 WILD-TYPE" "TRERF1 WILD-TYPE" "TRERF1 WILD-TYPE" "TRERF1 WILD-TYPE" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"TRERF1 WILD-TYPE" "TRERF1 WILD-TYPE"   "TRERF1 MUTATED" "TRERF1 WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
"TRERF1 WILD-TYPE"   "TRERF1 MUTATED" "TRERF1 WILD-TYPE" "TRERF1 WILD-TYPE" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"TRERF1 WILD-TYPE" "TRERF1 WILD-TYPE" "TRERF1 WILD-TYPE" "TRERF1 WILD-TYPE" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
"TRERF1 WILD-TYPE" "TRERF1 WILD-TYPE" "TRERF1 WILD-TYPE" "TRERF1 WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
"TRERF1 WILD-TYPE" "TRERF1 WILD-TYPE" "TRERF1 WILD-TYPE" "TRERF1 WILD-TYPE" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"TRERF1 WILD-TYPE" "TRERF1 WILD-TYPE" "TRERF1 WILD-TYPE" "TRERF1 WILD-TYPE" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
"TRERF1 WILD-TYPE" "TRERF1 WILD-TYPE" "TRERF1 WILD-TYPE" "TRERF1 WILD-TYPE" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
"TRERF1 WILD-TYPE" "TRERF1 WILD-TYPE" "TRERF1 WILD-TYPE" "TRERF1 WILD-TYPE" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
"TRERF1 WILD-TYPE"   "TRERF1 MUTATED" "TRERF1 WILD-TYPE" "TRERF1 WILD-TYPE" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
"TRERF1 WILD-TYPE" "TRERF1 WILD-TYPE" "TRERF1 WILD-TYPE"   "TRERF1 MUTATED" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
"TRERF1 WILD-TYPE" "TRERF1 WILD-TYPE"   "TRERF1 MUTATED" "TRERF1 WILD-TYPE" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
"TRERF1 WILD-TYPE" "TRERF1 WILD-TYPE" "TRERF1 WILD-TYPE" "TRERF1 WILD-TYPE" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
"TRERF1 WILD-TYPE" "TRERF1 WILD-TYPE" "TRERF1 WILD-TYPE" "TRERF1 WILD-TYPE" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"TRERF1 WILD-TYPE" "TRERF1 WILD-TYPE" "TRERF1 WILD-TYPE" "TRERF1 WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"TRERF1 WILD-TYPE" "TRERF1 WILD-TYPE" "TRERF1 WILD-TYPE" "TRERF1 WILD-TYPE" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
"TRERF1 WILD-TYPE" "TRERF1 WILD-TYPE" "TRERF1 WILD-TYPE" "TRERF1 WILD-TYPE" 
      TCGA-US-A77J 
"TRERF1 WILD-TYPE" 
[1] "hr=" "2.4"
D356V2, continuous
                  vv
clus               STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  TRERF1 MUTATED          0        1         0         4         0        0
  TRERF1 WILD-TYPE        1        3        11        47         2        3
D356V3, multiclass
                  vv
clus               T1+T2 T3+T4
  TRERF1 MUTATED       1     4
  TRERF1 WILD-TYPE     5    62
D356V4, multiclass
       clus
vv      TRERF1 MUTATED TRERF1 WILD-TYPE
  T1+T2              1                5
  T3+T4              4               62
D356V5, binary
                  cls
clus                0  1
  TRERF1 MUTATED    1  4
  TRERF1 WILD-TYPE 16 50
[1] "tbl2"
                  cls
clus               [,1] [,2]
  TRERF1 MUTATED      1    4
  TRERF1 WILD-TYPE   16   50
   clus
vv  TRERF1 MUTATED TRERF1 WILD-TYPE
  0              1               16
  1              4               50
                  vv
clus               M0 M1 MX
  TRERF1 MUTATED    3  0  2
  TRERF1 WILD-TYPE 36  3 28
D356V6, multiclass
    clus
vv   TRERF1 MUTATED TRERF1 WILD-TYPE
  M0              3               36
  M1              0                3
  MX              2               28
D356V7, binary
                  cls
clus                0  1
  TRERF1 MUTATED    2  3
  TRERF1 WILD-TYPE 34 33
[1] "tbl2"
                  cls
clus               [,1] [,2]
  TRERF1 MUTATED      2    3
  TRERF1 WILD-TYPE   34   33
        clus
vv       TRERF1 MUTATED TRERF1 WILD-TYPE
  FEMALE              2               34
  MALE                3               33
                  vv
clus               PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  TRERF1 MUTATED                                     4
  TRERF1 WILD-TYPE                                  61
                  vv
clus               PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  TRERF1 MUTATED                                       1
  TRERF1 WILD-TYPE                                     3
                  vv
clus               PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  TRERF1 MUTATED                                                  0
  TRERF1 WILD-TYPE                                                2
D356V8, multiclass
                                                  clus
vv                                                 TRERF1 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                           4
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                         1
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA              0
                                                  clus
vv                                                 TRERF1 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                            61
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                           3
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                2
D356V9, continuous
D356V10, continuous
                  vv
clus               R0 R1 RX
  TRERF1 MUTATED    3  2  0
  TRERF1 WILD-TYPE 39 22  2
D356V11, multiclass
    clus
vv   TRERF1 MUTATED TRERF1 WILD-TYPE
  R0              3               39
  R1              2               22
  RX              0                2
D356V12, continuous

Clustering(357) Variable = CYP4F3 MUTATION ANALYSIS
D357V1, survival
                  sevent
clus2               0  1
  CYP4F3 MUTATED    2  0
  CYP4F3 WILD-TYPE 38 29
  CYP4F3 MUTATED CYP4F3 WILD-TYPE 
               2               67 
  CYP4F3 MUTATED CYP4F3 WILD-TYPE 
               0               29 
$`CYP4F3 MUTATED`
TCGA-HZ-8003 TCGA-IB-8126 
        0.69         0.56 

$`CYP4F3 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P5 TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR 
        0.13        11.93        12.66         2.47         0.03         5.46 
TCGA-FZ-5920 TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 
        2.01        36.20        20.81        12.89         7.66        13.02 
TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 
        7.89         0.92         0.66         0.13         0.26        12.13 
TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8005 TCGA-HZ-8315 
       11.87         0.26         0.62         0.79         3.95         0.92 
TCGA-HZ-8317 TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH 
        0.53         0.16         2.99         0.76         0.95         6.38 
TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 
        1.51        11.41        49.38         4.77        21.90        15.35 
TCGA-IB-7651 TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7888 
       19.82        15.65        27.98         4.04         3.62        43.79 
TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-8127 
       15.81        19.66        16.04         3.85        15.98        17.16 
TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG 
       10.82         9.86         7.20        15.12         0.26         1.35 
TCGA-LB-A7SX TCGA-OE-A75W TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E 
        4.18         3.62         8.12        13.68        16.80        14.14 
TCGA-US-A77J 
       18.67 

  CYP4F3 MUTATED CYP4F3 WILD-TYPE 
            0.56             0.03 
  CYP4F3 MUTATED CYP4F3 WILD-TYPE 
            0.69            49.38 
  CYP4F3 MUTATED CYP4F3 WILD-TYPE 
           0.625            7.890 
[1] "0.6 - 0.7 (0.6)"  "0.0 - 49.4 (7.9)"
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
"CYP4F3 WILD-TYPE" "CYP4F3 WILD-TYPE" "CYP4F3 WILD-TYPE" "CYP4F3 WILD-TYPE" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"CYP4F3 WILD-TYPE" "CYP4F3 WILD-TYPE" "CYP4F3 WILD-TYPE" "CYP4F3 WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
"CYP4F3 WILD-TYPE" "CYP4F3 WILD-TYPE" "CYP4F3 WILD-TYPE" "CYP4F3 WILD-TYPE" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"CYP4F3 WILD-TYPE" "CYP4F3 WILD-TYPE" "CYP4F3 WILD-TYPE" "CYP4F3 WILD-TYPE" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
"CYP4F3 WILD-TYPE" "CYP4F3 WILD-TYPE" "CYP4F3 WILD-TYPE" "CYP4F3 WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
"CYP4F3 WILD-TYPE" "CYP4F3 WILD-TYPE" "CYP4F3 WILD-TYPE" "CYP4F3 WILD-TYPE" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"CYP4F3 WILD-TYPE" "CYP4F3 WILD-TYPE" "CYP4F3 WILD-TYPE" "CYP4F3 WILD-TYPE" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
  "CYP4F3 MUTATED" "CYP4F3 WILD-TYPE" "CYP4F3 WILD-TYPE" "CYP4F3 WILD-TYPE" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
"CYP4F3 WILD-TYPE" "CYP4F3 WILD-TYPE" "CYP4F3 WILD-TYPE" "CYP4F3 WILD-TYPE" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
"CYP4F3 WILD-TYPE" "CYP4F3 WILD-TYPE" "CYP4F3 WILD-TYPE" "CYP4F3 WILD-TYPE" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
"CYP4F3 WILD-TYPE" "CYP4F3 WILD-TYPE" "CYP4F3 WILD-TYPE" "CYP4F3 WILD-TYPE" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
"CYP4F3 WILD-TYPE" "CYP4F3 WILD-TYPE" "CYP4F3 WILD-TYPE" "CYP4F3 WILD-TYPE" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
"CYP4F3 WILD-TYPE" "CYP4F3 WILD-TYPE" "CYP4F3 WILD-TYPE" "CYP4F3 WILD-TYPE" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
"CYP4F3 WILD-TYPE" "CYP4F3 WILD-TYPE"   "CYP4F3 MUTATED" "CYP4F3 WILD-TYPE" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"CYP4F3 WILD-TYPE" "CYP4F3 WILD-TYPE" "CYP4F3 WILD-TYPE" "CYP4F3 WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"CYP4F3 WILD-TYPE" "CYP4F3 WILD-TYPE" "CYP4F3 WILD-TYPE" "CYP4F3 WILD-TYPE" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
"CYP4F3 WILD-TYPE" "CYP4F3 WILD-TYPE" "CYP4F3 WILD-TYPE" "CYP4F3 WILD-TYPE" 
      TCGA-US-A77J 
"CYP4F3 WILD-TYPE" 
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
"CYP4F3 WILD-TYPE" "CYP4F3 WILD-TYPE" "CYP4F3 WILD-TYPE" "CYP4F3 WILD-TYPE" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"CYP4F3 WILD-TYPE" "CYP4F3 WILD-TYPE" "CYP4F3 WILD-TYPE" "CYP4F3 WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
"CYP4F3 WILD-TYPE" "CYP4F3 WILD-TYPE" "CYP4F3 WILD-TYPE" "CYP4F3 WILD-TYPE" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"CYP4F3 WILD-TYPE" "CYP4F3 WILD-TYPE" "CYP4F3 WILD-TYPE" "CYP4F3 WILD-TYPE" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
"CYP4F3 WILD-TYPE" "CYP4F3 WILD-TYPE" "CYP4F3 WILD-TYPE" "CYP4F3 WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
"CYP4F3 WILD-TYPE" "CYP4F3 WILD-TYPE" "CYP4F3 WILD-TYPE" "CYP4F3 WILD-TYPE" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"CYP4F3 WILD-TYPE" "CYP4F3 WILD-TYPE" "CYP4F3 WILD-TYPE" "CYP4F3 WILD-TYPE" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
  "CYP4F3 MUTATED" "CYP4F3 WILD-TYPE" "CYP4F3 WILD-TYPE" "CYP4F3 WILD-TYPE" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
"CYP4F3 WILD-TYPE" "CYP4F3 WILD-TYPE" "CYP4F3 WILD-TYPE" "CYP4F3 WILD-TYPE" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
"CYP4F3 WILD-TYPE" "CYP4F3 WILD-TYPE" "CYP4F3 WILD-TYPE" "CYP4F3 WILD-TYPE" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
"CYP4F3 WILD-TYPE" "CYP4F3 WILD-TYPE" "CYP4F3 WILD-TYPE" "CYP4F3 WILD-TYPE" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
"CYP4F3 WILD-TYPE" "CYP4F3 WILD-TYPE" "CYP4F3 WILD-TYPE" "CYP4F3 WILD-TYPE" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
"CYP4F3 WILD-TYPE" "CYP4F3 WILD-TYPE" "CYP4F3 WILD-TYPE" "CYP4F3 WILD-TYPE" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
"CYP4F3 WILD-TYPE" "CYP4F3 WILD-TYPE"   "CYP4F3 MUTATED" "CYP4F3 WILD-TYPE" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"CYP4F3 WILD-TYPE" "CYP4F3 WILD-TYPE" "CYP4F3 WILD-TYPE" "CYP4F3 WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"CYP4F3 WILD-TYPE" "CYP4F3 WILD-TYPE" "CYP4F3 WILD-TYPE" "CYP4F3 WILD-TYPE" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
"CYP4F3 WILD-TYPE" "CYP4F3 WILD-TYPE" "CYP4F3 WILD-TYPE" "CYP4F3 WILD-TYPE" 
      TCGA-US-A77J 
"CYP4F3 WILD-TYPE" 
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
"CYP4F3 WILD-TYPE" "CYP4F3 WILD-TYPE" "CYP4F3 WILD-TYPE" "CYP4F3 WILD-TYPE" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"CYP4F3 WILD-TYPE" "CYP4F3 WILD-TYPE" "CYP4F3 WILD-TYPE" "CYP4F3 WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
"CYP4F3 WILD-TYPE" "CYP4F3 WILD-TYPE" "CYP4F3 WILD-TYPE" "CYP4F3 WILD-TYPE" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"CYP4F3 WILD-TYPE" "CYP4F3 WILD-TYPE" "CYP4F3 WILD-TYPE" "CYP4F3 WILD-TYPE" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
"CYP4F3 WILD-TYPE" "CYP4F3 WILD-TYPE" "CYP4F3 WILD-TYPE" "CYP4F3 WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
"CYP4F3 WILD-TYPE" "CYP4F3 WILD-TYPE" "CYP4F3 WILD-TYPE" "CYP4F3 WILD-TYPE" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"CYP4F3 WILD-TYPE" "CYP4F3 WILD-TYPE" "CYP4F3 WILD-TYPE" "CYP4F3 WILD-TYPE" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
  "CYP4F3 MUTATED" "CYP4F3 WILD-TYPE" "CYP4F3 WILD-TYPE" "CYP4F3 WILD-TYPE" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
"CYP4F3 WILD-TYPE" "CYP4F3 WILD-TYPE" "CYP4F3 WILD-TYPE" "CYP4F3 WILD-TYPE" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
"CYP4F3 WILD-TYPE" "CYP4F3 WILD-TYPE" "CYP4F3 WILD-TYPE" "CYP4F3 WILD-TYPE" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
"CYP4F3 WILD-TYPE" "CYP4F3 WILD-TYPE" "CYP4F3 WILD-TYPE" "CYP4F3 WILD-TYPE" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
"CYP4F3 WILD-TYPE" "CYP4F3 WILD-TYPE" "CYP4F3 WILD-TYPE" "CYP4F3 WILD-TYPE" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
"CYP4F3 WILD-TYPE" "CYP4F3 WILD-TYPE" "CYP4F3 WILD-TYPE" "CYP4F3 WILD-TYPE" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
"CYP4F3 WILD-TYPE" "CYP4F3 WILD-TYPE"   "CYP4F3 MUTATED" "CYP4F3 WILD-TYPE" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"CYP4F3 WILD-TYPE" "CYP4F3 WILD-TYPE" "CYP4F3 WILD-TYPE" "CYP4F3 WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"CYP4F3 WILD-TYPE" "CYP4F3 WILD-TYPE" "CYP4F3 WILD-TYPE" "CYP4F3 WILD-TYPE" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
"CYP4F3 WILD-TYPE" "CYP4F3 WILD-TYPE" "CYP4F3 WILD-TYPE" "CYP4F3 WILD-TYPE" 
      TCGA-US-A77J 
"CYP4F3 WILD-TYPE" 
[1] "Remove cluster labels:" "CYP4F3 MUTATED"        
clus
  CYP4F3 MUTATED CYP4F3 WILD-TYPE 
               2               67 
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
"CYP4F3 WILD-TYPE" "CYP4F3 WILD-TYPE" "CYP4F3 WILD-TYPE" "CYP4F3 WILD-TYPE" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"CYP4F3 WILD-TYPE" "CYP4F3 WILD-TYPE" "CYP4F3 WILD-TYPE" "CYP4F3 WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
"CYP4F3 WILD-TYPE" "CYP4F3 WILD-TYPE" "CYP4F3 WILD-TYPE" "CYP4F3 WILD-TYPE" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"CYP4F3 WILD-TYPE" "CYP4F3 WILD-TYPE" "CYP4F3 WILD-TYPE" "CYP4F3 WILD-TYPE" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
"CYP4F3 WILD-TYPE" "CYP4F3 WILD-TYPE" "CYP4F3 WILD-TYPE" "CYP4F3 WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
"CYP4F3 WILD-TYPE" "CYP4F3 WILD-TYPE" "CYP4F3 WILD-TYPE" "CYP4F3 WILD-TYPE" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"CYP4F3 WILD-TYPE" "CYP4F3 WILD-TYPE" "CYP4F3 WILD-TYPE" "CYP4F3 WILD-TYPE" 
      TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317       TCGA-HZ-8636 
"CYP4F3 WILD-TYPE" "CYP4F3 WILD-TYPE" "CYP4F3 WILD-TYPE" "CYP4F3 WILD-TYPE" 
      TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H       TCGA-HZ-A4BH 
"CYP4F3 WILD-TYPE" "CYP4F3 WILD-TYPE" "CYP4F3 WILD-TYPE" "CYP4F3 WILD-TYPE" 
      TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645       TCGA-IB-7646 
"CYP4F3 WILD-TYPE" "CYP4F3 WILD-TYPE" "CYP4F3 WILD-TYPE" "CYP4F3 WILD-TYPE" 
      TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651       TCGA-IB-7652 
"CYP4F3 WILD-TYPE" "CYP4F3 WILD-TYPE" "CYP4F3 WILD-TYPE" "CYP4F3 WILD-TYPE" 
      TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887       TCGA-IB-7888 
"CYP4F3 WILD-TYPE" "CYP4F3 WILD-TYPE" "CYP4F3 WILD-TYPE" "CYP4F3 WILD-TYPE" 
      TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891       TCGA-IB-7893 
"CYP4F3 WILD-TYPE" "CYP4F3 WILD-TYPE" "CYP4F3 WILD-TYPE" "CYP4F3 WILD-TYPE" 
      TCGA-IB-7897       TCGA-IB-8127       TCGA-IB-A5SO       TCGA-IB-A5SP 
"CYP4F3 WILD-TYPE" "CYP4F3 WILD-TYPE" "CYP4F3 WILD-TYPE" "CYP4F3 WILD-TYPE" 
      TCGA-IB-A5SQ       TCGA-IB-A5SS       TCGA-IB-A5ST       TCGA-IB-A6UG 
"CYP4F3 WILD-TYPE" "CYP4F3 WILD-TYPE" "CYP4F3 WILD-TYPE" "CYP4F3 WILD-TYPE" 
      TCGA-LB-A7SX       TCGA-OE-A75W       TCGA-PZ-A5RE       TCGA-Q3-A5QY 
"CYP4F3 WILD-TYPE" "CYP4F3 WILD-TYPE" "CYP4F3 WILD-TYPE" "CYP4F3 WILD-TYPE" 
      TCGA-US-A779       TCGA-US-A77E       TCGA-US-A77J 
"CYP4F3 WILD-TYPE" "CYP4F3 WILD-TYPE" "CYP4F3 WILD-TYPE" 
D357V2, continuous
                  vv
clus               STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  CYP4F3 MUTATED          0        0         0         2         1        0
  CYP4F3 WILD-TYPE        1        4        11        49         1        3
D357V3, multiclass
                  vv
clus               T1+T2 T3+T4
  CYP4F3 MUTATED       0     3
  CYP4F3 WILD-TYPE     6    63
D357V4, multiclass
       clus
vv      CYP4F3 MUTATED CYP4F3 WILD-TYPE
  T1+T2              0                6
  T3+T4              3               63
D357V5, binary
                  cls
clus                0  1
  CYP4F3 MUTATED    0  3
  CYP4F3 WILD-TYPE 17 51
[1] "tbl2"
                  cls
clus               [,1] [,2]
  CYP4F3 MUTATED      0    3
  CYP4F3 WILD-TYPE   17   51
   clus
vv  CYP4F3 MUTATED CYP4F3 WILD-TYPE
  0              0               17
  1              3               51
                  vv
clus               M0 M1 MX
  CYP4F3 MUTATED    1  0  2
  CYP4F3 WILD-TYPE 38  3 28
D357V6, multiclass
    clus
vv   CYP4F3 MUTATED CYP4F3 WILD-TYPE
  M0              1               38
  M1              0                3
  MX              2               28
D357V7, binary
                  cls
clus                0  1
  CYP4F3 MUTATED    3  0
  CYP4F3 WILD-TYPE 33 36
[1] "tbl2"
                  cls
clus               [,1] [,2]
  CYP4F3 MUTATED      3    0
  CYP4F3 WILD-TYPE   33   36
        clus
vv       CYP4F3 MUTATED CYP4F3 WILD-TYPE
  FEMALE              3               33
  MALE                0               36
                  vv
clus               PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  CYP4F3 MUTATED                                     3
  CYP4F3 WILD-TYPE                                  62
                  vv
clus               PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  CYP4F3 MUTATED                                       0
  CYP4F3 WILD-TYPE                                     4
                  vv
clus               PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  CYP4F3 MUTATED                                                  0
  CYP4F3 WILD-TYPE                                                2
D357V8, multiclass
                                                  clus
vv                                                 CYP4F3 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                           3
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                         0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA              0
                                                  clus
vv                                                 CYP4F3 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                            62
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                           4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                2
D357V9, continuous
[1] "Remove cluster labels:" "CYP4F3 MUTATED"        
clus
  CYP4F3 MUTATED CYP4F3 WILD-TYPE 
               1               21 
      TCGA-F2-6880       TCGA-FB-A4P5       TCGA-FB-A4P6       TCGA-FB-A5VM 
"CYP4F3 WILD-TYPE" "CYP4F3 WILD-TYPE" "CYP4F3 WILD-TYPE" "CYP4F3 WILD-TYPE" 
      TCGA-FB-A78T       TCGA-FB-A7DR       TCGA-H6-8124       TCGA-H6-A45N 
"CYP4F3 WILD-TYPE" "CYP4F3 WILD-TYPE" "CYP4F3 WILD-TYPE" "CYP4F3 WILD-TYPE" 
      TCGA-H8-A6C1       TCGA-IB-7644       TCGA-IB-7649       TCGA-IB-7651 
"CYP4F3 WILD-TYPE" "CYP4F3 WILD-TYPE" "CYP4F3 WILD-TYPE" "CYP4F3 WILD-TYPE" 
      TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887       TCGA-IB-7891 
"CYP4F3 WILD-TYPE" "CYP4F3 WILD-TYPE" "CYP4F3 WILD-TYPE" "CYP4F3 WILD-TYPE" 
      TCGA-IB-8127       TCGA-IB-A5SS       TCGA-IB-A6UG       TCGA-LB-A7SX 
"CYP4F3 WILD-TYPE" "CYP4F3 WILD-TYPE" "CYP4F3 WILD-TYPE" "CYP4F3 WILD-TYPE" 
      TCGA-OE-A75W 
"CYP4F3 WILD-TYPE" 
D357V10, continuous
[1] "Remove cluster labels:" "CYP4F3 MUTATED"        
clus
  CYP4F3 MUTATED CYP4F3 WILD-TYPE 
               1               18 
      TCGA-FB-A4P5       TCGA-FB-A4P6       TCGA-FB-A5VM       TCGA-FB-A78T 
"CYP4F3 WILD-TYPE" "CYP4F3 WILD-TYPE" "CYP4F3 WILD-TYPE" "CYP4F3 WILD-TYPE" 
      TCGA-FB-A7DR       TCGA-H6-8124       TCGA-H8-A6C1       TCGA-IB-7644 
"CYP4F3 WILD-TYPE" "CYP4F3 WILD-TYPE" "CYP4F3 WILD-TYPE" "CYP4F3 WILD-TYPE" 
      TCGA-IB-7649       TCGA-IB-7651       TCGA-IB-7885       TCGA-IB-7886 
"CYP4F3 WILD-TYPE" "CYP4F3 WILD-TYPE" "CYP4F3 WILD-TYPE" "CYP4F3 WILD-TYPE" 
      TCGA-IB-7891       TCGA-IB-8127       TCGA-IB-A5SS       TCGA-IB-A6UG 
"CYP4F3 WILD-TYPE" "CYP4F3 WILD-TYPE" "CYP4F3 WILD-TYPE" "CYP4F3 WILD-TYPE" 
      TCGA-LB-A7SX       TCGA-OE-A75W 
"CYP4F3 WILD-TYPE" "CYP4F3 WILD-TYPE" 
                  vv
clus               R0 R1 RX
  CYP4F3 MUTATED    2  1  0
  CYP4F3 WILD-TYPE 40 23  2
D357V11, multiclass
    clus
vv   CYP4F3 MUTATED CYP4F3 WILD-TYPE
  R0              2               40
  R1              1               23
  RX              0                2
D357V12, continuous

Clustering(358) Variable = SYNPO2L MUTATION ANALYSIS
D358V1, survival
                   sevent
clus2                0  1
  SYNPO2L MUTATED    3  2
  SYNPO2L WILD-TYPE 37 27
  SYNPO2L MUTATED SYNPO2L WILD-TYPE 
                5                64 
  SYNPO2L MUTATED SYNPO2L WILD-TYPE 
                2                27 
$`SYNPO2L MUTATED`
TCGA-H6-A45N TCGA-HZ-8317 TCGA-HZ-8638 TCGA-IB-7651 TCGA-IB-A5ST 
        7.66         0.53         2.99        19.82         0.26 

$`SYNPO2L WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P5 TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR 
        0.13        11.93        12.66         2.47         0.03         5.46 
TCGA-FZ-5920 TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 TCGA-H8-A6C1 TCGA-HZ-7289 
        2.01        36.20        20.81        12.89        13.02         7.89 
TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 
        0.92         0.66         0.13         0.26        12.13        11.87 
TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 
        0.26         0.62         0.79         0.69         3.95         0.92 
TCGA-HZ-8636 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 
        0.16         0.76         0.95         6.38         1.51        11.41 
TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7652 TCGA-IB-7885 
       49.38         4.77        21.90        15.35        15.65        27.98 
TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 
        4.04         3.62        43.79        15.81        19.66        16.04 
TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP 
        3.85        15.98         0.56        17.16        10.82         9.86 
TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W TCGA-PZ-A5RE 
        7.20        15.12         1.35         4.18         3.62         8.12 
TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
       13.68        16.80        14.14        18.67 

  SYNPO2L MUTATED SYNPO2L WILD-TYPE 
             0.26              0.03 
  SYNPO2L MUTATED SYNPO2L WILD-TYPE 
            19.82             49.38 
  SYNPO2L MUTATED SYNPO2L WILD-TYPE 
            2.990             8.005 
[1] "0.3 - 19.8 (3.0)" "0.0 - 49.4 (8.0)"
       TCGA-F2-6879        TCGA-F2-6880        TCGA-F2-7273        TCGA-F2-7276 
"SYNPO2L WILD-TYPE" "SYNPO2L WILD-TYPE" "SYNPO2L WILD-TYPE" "SYNPO2L WILD-TYPE" 
       TCGA-F2-A44G        TCGA-F2-A44H        TCGA-FB-A4P5        TCGA-FB-A4P6 
"SYNPO2L WILD-TYPE" "SYNPO2L WILD-TYPE" "SYNPO2L WILD-TYPE" "SYNPO2L WILD-TYPE" 
       TCGA-FB-A545        TCGA-FB-A5VM        TCGA-FB-A78T        TCGA-FB-A7DR 
"SYNPO2L WILD-TYPE" "SYNPO2L WILD-TYPE" "SYNPO2L WILD-TYPE" "SYNPO2L WILD-TYPE" 
       TCGA-FZ-5920        TCGA-FZ-5922        TCGA-FZ-5923        TCGA-H6-8124 
"SYNPO2L WILD-TYPE" "SYNPO2L WILD-TYPE" "SYNPO2L WILD-TYPE" "SYNPO2L WILD-TYPE" 
       TCGA-H6-A45N        TCGA-H8-A6C1        TCGA-HZ-7289        TCGA-HZ-7918 
  "SYNPO2L MUTATED" "SYNPO2L WILD-TYPE" "SYNPO2L WILD-TYPE" "SYNPO2L WILD-TYPE" 
       TCGA-HZ-7919        TCGA-HZ-7922        TCGA-HZ-7923        TCGA-HZ-7924 
"SYNPO2L WILD-TYPE" "SYNPO2L WILD-TYPE" "SYNPO2L WILD-TYPE" "SYNPO2L WILD-TYPE" 
       TCGA-HZ-7925        TCGA-HZ-7926        TCGA-HZ-8001        TCGA-HZ-8002 
"SYNPO2L WILD-TYPE" "SYNPO2L WILD-TYPE" "SYNPO2L WILD-TYPE" "SYNPO2L WILD-TYPE" 
       TCGA-HZ-8003        TCGA-HZ-8005        TCGA-HZ-8315        TCGA-HZ-8317 
"SYNPO2L WILD-TYPE" "SYNPO2L WILD-TYPE" "SYNPO2L WILD-TYPE"   "SYNPO2L MUTATED" 
       TCGA-HZ-8636        TCGA-HZ-8638        TCGA-HZ-A49G        TCGA-HZ-A49H 
"SYNPO2L WILD-TYPE"   "SYNPO2L MUTATED" "SYNPO2L WILD-TYPE" "SYNPO2L WILD-TYPE" 
       TCGA-HZ-A4BH        TCGA-HZ-A4BK        TCGA-IB-7644        TCGA-IB-7645 
"SYNPO2L WILD-TYPE" "SYNPO2L WILD-TYPE" "SYNPO2L WILD-TYPE" "SYNPO2L WILD-TYPE" 
       TCGA-IB-7646        TCGA-IB-7647        TCGA-IB-7649        TCGA-IB-7651 
"SYNPO2L WILD-TYPE" "SYNPO2L WILD-TYPE" "SYNPO2L WILD-TYPE"   "SYNPO2L MUTATED" 
       TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-7886        TCGA-IB-7887 
"SYNPO2L WILD-TYPE" "SYNPO2L WILD-TYPE" "SYNPO2L WILD-TYPE" "SYNPO2L WILD-TYPE" 
       TCGA-IB-7888        TCGA-IB-7889        TCGA-IB-7890        TCGA-IB-7891 
"SYNPO2L WILD-TYPE" "SYNPO2L WILD-TYPE" "SYNPO2L WILD-TYPE" "SYNPO2L WILD-TYPE" 
       TCGA-IB-7893        TCGA-IB-7897        TCGA-IB-8126        TCGA-IB-8127 
"SYNPO2L WILD-TYPE" "SYNPO2L WILD-TYPE" "SYNPO2L WILD-TYPE" "SYNPO2L WILD-TYPE" 
       TCGA-IB-A5SO        TCGA-IB-A5SP        TCGA-IB-A5SQ        TCGA-IB-A5SS 
"SYNPO2L WILD-TYPE" "SYNPO2L WILD-TYPE" "SYNPO2L WILD-TYPE" "SYNPO2L WILD-TYPE" 
       TCGA-IB-A5ST        TCGA-IB-A6UG        TCGA-LB-A7SX        TCGA-OE-A75W 
  "SYNPO2L MUTATED" "SYNPO2L WILD-TYPE" "SYNPO2L WILD-TYPE" "SYNPO2L WILD-TYPE" 
       TCGA-PZ-A5RE        TCGA-Q3-A5QY        TCGA-US-A779        TCGA-US-A77E 
"SYNPO2L WILD-TYPE" "SYNPO2L WILD-TYPE" "SYNPO2L WILD-TYPE" "SYNPO2L WILD-TYPE" 
       TCGA-US-A77J 
"SYNPO2L WILD-TYPE" 
       TCGA-F2-6879        TCGA-F2-6880        TCGA-F2-7273        TCGA-F2-7276 
"SYNPO2L WILD-TYPE" "SYNPO2L WILD-TYPE" "SYNPO2L WILD-TYPE" "SYNPO2L WILD-TYPE" 
       TCGA-F2-A44G        TCGA-F2-A44H        TCGA-FB-A4P5        TCGA-FB-A4P6 
"SYNPO2L WILD-TYPE" "SYNPO2L WILD-TYPE" "SYNPO2L WILD-TYPE" "SYNPO2L WILD-TYPE" 
       TCGA-FB-A545        TCGA-FB-A5VM        TCGA-FB-A78T        TCGA-FB-A7DR 
"SYNPO2L WILD-TYPE" "SYNPO2L WILD-TYPE" "SYNPO2L WILD-TYPE" "SYNPO2L WILD-TYPE" 
       TCGA-FZ-5920        TCGA-FZ-5922        TCGA-FZ-5923        TCGA-H6-8124 
"SYNPO2L WILD-TYPE" "SYNPO2L WILD-TYPE" "SYNPO2L WILD-TYPE" "SYNPO2L WILD-TYPE" 
       TCGA-H6-A45N        TCGA-H8-A6C1        TCGA-HZ-7289        TCGA-HZ-7918 
  "SYNPO2L MUTATED" "SYNPO2L WILD-TYPE" "SYNPO2L WILD-TYPE" "SYNPO2L WILD-TYPE" 
       TCGA-HZ-7919        TCGA-HZ-7922        TCGA-HZ-7923        TCGA-HZ-7924 
"SYNPO2L WILD-TYPE" "SYNPO2L WILD-TYPE" "SYNPO2L WILD-TYPE" "SYNPO2L WILD-TYPE" 
       TCGA-HZ-7925        TCGA-HZ-7926        TCGA-HZ-8001        TCGA-HZ-8002 
"SYNPO2L WILD-TYPE" "SYNPO2L WILD-TYPE" "SYNPO2L WILD-TYPE" "SYNPO2L WILD-TYPE" 
       TCGA-HZ-8003        TCGA-HZ-8005        TCGA-HZ-8315        TCGA-HZ-8317 
"SYNPO2L WILD-TYPE" "SYNPO2L WILD-TYPE" "SYNPO2L WILD-TYPE"   "SYNPO2L MUTATED" 
       TCGA-HZ-8636        TCGA-HZ-8638        TCGA-HZ-A49G        TCGA-HZ-A49H 
"SYNPO2L WILD-TYPE"   "SYNPO2L MUTATED" "SYNPO2L WILD-TYPE" "SYNPO2L WILD-TYPE" 
       TCGA-HZ-A4BH        TCGA-HZ-A4BK        TCGA-IB-7644        TCGA-IB-7645 
"SYNPO2L WILD-TYPE" "SYNPO2L WILD-TYPE" "SYNPO2L WILD-TYPE" "SYNPO2L WILD-TYPE" 
       TCGA-IB-7646        TCGA-IB-7647        TCGA-IB-7649        TCGA-IB-7651 
"SYNPO2L WILD-TYPE" "SYNPO2L WILD-TYPE" "SYNPO2L WILD-TYPE"   "SYNPO2L MUTATED" 
       TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-7886        TCGA-IB-7887 
"SYNPO2L WILD-TYPE" "SYNPO2L WILD-TYPE" "SYNPO2L WILD-TYPE" "SYNPO2L WILD-TYPE" 
       TCGA-IB-7888        TCGA-IB-7889        TCGA-IB-7890        TCGA-IB-7891 
"SYNPO2L WILD-TYPE" "SYNPO2L WILD-TYPE" "SYNPO2L WILD-TYPE" "SYNPO2L WILD-TYPE" 
       TCGA-IB-7893        TCGA-IB-7897        TCGA-IB-8126        TCGA-IB-8127 
"SYNPO2L WILD-TYPE" "SYNPO2L WILD-TYPE" "SYNPO2L WILD-TYPE" "SYNPO2L WILD-TYPE" 
       TCGA-IB-A5SO        TCGA-IB-A5SP        TCGA-IB-A5SQ        TCGA-IB-A5SS 
"SYNPO2L WILD-TYPE" "SYNPO2L WILD-TYPE" "SYNPO2L WILD-TYPE" "SYNPO2L WILD-TYPE" 
       TCGA-IB-A5ST        TCGA-IB-A6UG        TCGA-LB-A7SX        TCGA-OE-A75W 
  "SYNPO2L MUTATED" "SYNPO2L WILD-TYPE" "SYNPO2L WILD-TYPE" "SYNPO2L WILD-TYPE" 
       TCGA-PZ-A5RE        TCGA-Q3-A5QY        TCGA-US-A779        TCGA-US-A77E 
"SYNPO2L WILD-TYPE" "SYNPO2L WILD-TYPE" "SYNPO2L WILD-TYPE" "SYNPO2L WILD-TYPE" 
       TCGA-US-A77J 
"SYNPO2L WILD-TYPE" 
       TCGA-F2-6879        TCGA-F2-6880        TCGA-F2-7273        TCGA-F2-7276 
"SYNPO2L WILD-TYPE" "SYNPO2L WILD-TYPE" "SYNPO2L WILD-TYPE" "SYNPO2L WILD-TYPE" 
       TCGA-F2-A44G        TCGA-F2-A44H        TCGA-FB-A4P5        TCGA-FB-A4P6 
"SYNPO2L WILD-TYPE" "SYNPO2L WILD-TYPE" "SYNPO2L WILD-TYPE" "SYNPO2L WILD-TYPE" 
       TCGA-FB-A545        TCGA-FB-A5VM        TCGA-FB-A78T        TCGA-FB-A7DR 
"SYNPO2L WILD-TYPE" "SYNPO2L WILD-TYPE" "SYNPO2L WILD-TYPE" "SYNPO2L WILD-TYPE" 
       TCGA-FZ-5920        TCGA-FZ-5922        TCGA-FZ-5923        TCGA-H6-8124 
"SYNPO2L WILD-TYPE" "SYNPO2L WILD-TYPE" "SYNPO2L WILD-TYPE" "SYNPO2L WILD-TYPE" 
       TCGA-H6-A45N        TCGA-H8-A6C1        TCGA-HZ-7289        TCGA-HZ-7918 
  "SYNPO2L MUTATED" "SYNPO2L WILD-TYPE" "SYNPO2L WILD-TYPE" "SYNPO2L WILD-TYPE" 
       TCGA-HZ-7919        TCGA-HZ-7922        TCGA-HZ-7923        TCGA-HZ-7924 
"SYNPO2L WILD-TYPE" "SYNPO2L WILD-TYPE" "SYNPO2L WILD-TYPE" "SYNPO2L WILD-TYPE" 
       TCGA-HZ-7925        TCGA-HZ-7926        TCGA-HZ-8001        TCGA-HZ-8002 
"SYNPO2L WILD-TYPE" "SYNPO2L WILD-TYPE" "SYNPO2L WILD-TYPE" "SYNPO2L WILD-TYPE" 
       TCGA-HZ-8003        TCGA-HZ-8005        TCGA-HZ-8315        TCGA-HZ-8317 
"SYNPO2L WILD-TYPE" "SYNPO2L WILD-TYPE" "SYNPO2L WILD-TYPE"   "SYNPO2L MUTATED" 
       TCGA-HZ-8636        TCGA-HZ-8638        TCGA-HZ-A49G        TCGA-HZ-A49H 
"SYNPO2L WILD-TYPE"   "SYNPO2L MUTATED" "SYNPO2L WILD-TYPE" "SYNPO2L WILD-TYPE" 
       TCGA-HZ-A4BH        TCGA-HZ-A4BK        TCGA-IB-7644        TCGA-IB-7645 
"SYNPO2L WILD-TYPE" "SYNPO2L WILD-TYPE" "SYNPO2L WILD-TYPE" "SYNPO2L WILD-TYPE" 
       TCGA-IB-7646        TCGA-IB-7647        TCGA-IB-7649        TCGA-IB-7651 
"SYNPO2L WILD-TYPE" "SYNPO2L WILD-TYPE" "SYNPO2L WILD-TYPE"   "SYNPO2L MUTATED" 
       TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-7886        TCGA-IB-7887 
"SYNPO2L WILD-TYPE" "SYNPO2L WILD-TYPE" "SYNPO2L WILD-TYPE" "SYNPO2L WILD-TYPE" 
       TCGA-IB-7888        TCGA-IB-7889        TCGA-IB-7890        TCGA-IB-7891 
"SYNPO2L WILD-TYPE" "SYNPO2L WILD-TYPE" "SYNPO2L WILD-TYPE" "SYNPO2L WILD-TYPE" 
       TCGA-IB-7893        TCGA-IB-7897        TCGA-IB-8126        TCGA-IB-8127 
"SYNPO2L WILD-TYPE" "SYNPO2L WILD-TYPE" "SYNPO2L WILD-TYPE" "SYNPO2L WILD-TYPE" 
       TCGA-IB-A5SO        TCGA-IB-A5SP        TCGA-IB-A5SQ        TCGA-IB-A5SS 
"SYNPO2L WILD-TYPE" "SYNPO2L WILD-TYPE" "SYNPO2L WILD-TYPE" "SYNPO2L WILD-TYPE" 
       TCGA-IB-A5ST        TCGA-IB-A6UG        TCGA-LB-A7SX        TCGA-OE-A75W 
  "SYNPO2L MUTATED" "SYNPO2L WILD-TYPE" "SYNPO2L WILD-TYPE" "SYNPO2L WILD-TYPE" 
       TCGA-PZ-A5RE        TCGA-Q3-A5QY        TCGA-US-A779        TCGA-US-A77E 
"SYNPO2L WILD-TYPE" "SYNPO2L WILD-TYPE" "SYNPO2L WILD-TYPE" "SYNPO2L WILD-TYPE" 
       TCGA-US-A77J 
"SYNPO2L WILD-TYPE" 
[1] "hr=" "1.4"
D358V2, continuous
                   vv
clus                STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  SYNPO2L MUTATED          1        0         0         4         0        0
  SYNPO2L WILD-TYPE        0        4        11        47         2        3
D358V3, multiclass
                   vv
clus                T1+T2 T3+T4
  SYNPO2L MUTATED       1     4
  SYNPO2L WILD-TYPE     5    62
D358V4, multiclass
       clus
vv      SYNPO2L MUTATED SYNPO2L WILD-TYPE
  T1+T2               1                 5
  T3+T4               4                62
D358V5, binary
                   cls
clus                 0  1
  SYNPO2L MUTATED    1  4
  SYNPO2L WILD-TYPE 16 50
[1] "tbl2"
                   cls
clus                [,1] [,2]
  SYNPO2L MUTATED      1    4
  SYNPO2L WILD-TYPE   16   50
   clus
vv  SYNPO2L MUTATED SYNPO2L WILD-TYPE
  0               1                16
  1               4                50
                   vv
clus                M0 M1 MX
  SYNPO2L MUTATED    2  0  3
  SYNPO2L WILD-TYPE 37  3 27
D358V6, multiclass
    clus
vv   SYNPO2L MUTATED SYNPO2L WILD-TYPE
  M0               2                37
  M1               0                 3
  MX               3                27
D358V7, binary
                   cls
clus                 0  1
  SYNPO2L MUTATED    5  0
  SYNPO2L WILD-TYPE 31 36
[1] "tbl2"
                   cls
clus                [,1] [,2]
  SYNPO2L MUTATED      5    0
  SYNPO2L WILD-TYPE   31   36
        clus
vv       SYNPO2L MUTATED SYNPO2L WILD-TYPE
  FEMALE               5                31
  MALE                 0                36
                   vv
clus                PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  SYNPO2L MUTATED                                     3
  SYNPO2L WILD-TYPE                                  62
                   vv
clus                PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  SYNPO2L MUTATED                                       1
  SYNPO2L WILD-TYPE                                     3
                   vv
clus                PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  SYNPO2L MUTATED                                                  1
  SYNPO2L WILD-TYPE                                                1
D358V8, multiclass
                                                  clus
vv                                                 SYNPO2L MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                            3
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                          1
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA               1
                                                  clus
vv                                                 SYNPO2L WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                             62
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                            3
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                 1
D358V9, continuous
[1] "Remove cluster labels:" "SYNPO2L MUTATED"       
clus
  SYNPO2L MUTATED SYNPO2L WILD-TYPE 
                2                20 
       TCGA-F2-6880        TCGA-FB-A4P5        TCGA-FB-A4P6        TCGA-FB-A5VM 
"SYNPO2L WILD-TYPE" "SYNPO2L WILD-TYPE" "SYNPO2L WILD-TYPE" "SYNPO2L WILD-TYPE" 
       TCGA-FB-A78T        TCGA-FB-A7DR        TCGA-H6-8124        TCGA-H8-A6C1 
"SYNPO2L WILD-TYPE" "SYNPO2L WILD-TYPE" "SYNPO2L WILD-TYPE" "SYNPO2L WILD-TYPE" 
       TCGA-IB-7644        TCGA-IB-7649        TCGA-IB-7885        TCGA-IB-7886 
"SYNPO2L WILD-TYPE" "SYNPO2L WILD-TYPE" "SYNPO2L WILD-TYPE" "SYNPO2L WILD-TYPE" 
       TCGA-IB-7887        TCGA-IB-7891        TCGA-IB-8126        TCGA-IB-8127 
"SYNPO2L WILD-TYPE" "SYNPO2L WILD-TYPE" "SYNPO2L WILD-TYPE" "SYNPO2L WILD-TYPE" 
       TCGA-IB-A5SS        TCGA-IB-A6UG        TCGA-LB-A7SX        TCGA-OE-A75W 
"SYNPO2L WILD-TYPE" "SYNPO2L WILD-TYPE" "SYNPO2L WILD-TYPE" "SYNPO2L WILD-TYPE" 
D358V10, continuous
[1] "Remove cluster labels:" "SYNPO2L MUTATED"       
clus
  SYNPO2L MUTATED SYNPO2L WILD-TYPE 
                1                18 
       TCGA-FB-A4P5        TCGA-FB-A4P6        TCGA-FB-A5VM        TCGA-FB-A78T 
"SYNPO2L WILD-TYPE" "SYNPO2L WILD-TYPE" "SYNPO2L WILD-TYPE" "SYNPO2L WILD-TYPE" 
       TCGA-FB-A7DR        TCGA-H6-8124        TCGA-H8-A6C1        TCGA-IB-7644 
"SYNPO2L WILD-TYPE" "SYNPO2L WILD-TYPE" "SYNPO2L WILD-TYPE" "SYNPO2L WILD-TYPE" 
       TCGA-IB-7649        TCGA-IB-7885        TCGA-IB-7886        TCGA-IB-7891 
"SYNPO2L WILD-TYPE" "SYNPO2L WILD-TYPE" "SYNPO2L WILD-TYPE" "SYNPO2L WILD-TYPE" 
       TCGA-IB-8126        TCGA-IB-8127        TCGA-IB-A5SS        TCGA-IB-A6UG 
"SYNPO2L WILD-TYPE" "SYNPO2L WILD-TYPE" "SYNPO2L WILD-TYPE" "SYNPO2L WILD-TYPE" 
       TCGA-LB-A7SX        TCGA-OE-A75W 
"SYNPO2L WILD-TYPE" "SYNPO2L WILD-TYPE" 
                   vv
clus                R0 R1 RX
  SYNPO2L MUTATED    3  1  0
  SYNPO2L WILD-TYPE 39 23  2
D358V11, multiclass
    clus
vv   SYNPO2L MUTATED SYNPO2L WILD-TYPE
  R0               3                39
  R1               1                23
  RX               0                 2
D358V12, continuous

Clustering(359) Variable = PPP1R12B MUTATION ANALYSIS
D359V1, survival
                    sevent
clus2                 0  1
  PPP1R12B MUTATED    2  2
  PPP1R12B WILD-TYPE 38 27
  PPP1R12B MUTATED PPP1R12B WILD-TYPE 
                 4                 65 
  PPP1R12B MUTATED PPP1R12B WILD-TYPE 
                 2                 27 
$`PPP1R12B MUTATED`
TCGA-F2-6879 TCGA-FB-A5VM TCGA-HZ-8636 TCGA-IB-7888 
       10.98         2.47         0.16        43.79 

$`PPP1R12B WILD-TYPE`
TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H TCGA-FB-A4P5 
        9.70        11.84         7.10         5.03        19.27         0.13 
TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A78T TCGA-FB-A7DR TCGA-FZ-5920 TCGA-FZ-5922 
       11.93        12.66         0.03         5.46         2.01        36.20 
TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7289 TCGA-HZ-7918 
       20.81        12.89         7.66        13.02         7.89         0.92 
TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 
        0.66         0.13         0.26        12.13        11.87         0.26 
TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 
        0.62         0.79         0.69         3.95         0.92         0.53 
TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 
        2.99         0.76         0.95         6.38         1.51        11.41 
TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7651 TCGA-IB-7652 
       49.38         4.77        21.90        15.35        19.82        15.65 
TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 
       27.98         4.04         3.62        15.81        19.66        16.04 
TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP 
        3.85        15.98         0.56        17.16        10.82         9.86 
TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W 
        7.20        15.12         0.26         1.35         4.18         3.62 
TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
        8.12        13.68        16.80        14.14        18.67 

  PPP1R12B MUTATED PPP1R12B WILD-TYPE 
              0.16               0.03 
  PPP1R12B MUTATED PPP1R12B WILD-TYPE 
             43.79              49.38 
  PPP1R12B MUTATED PPP1R12B WILD-TYPE 
             6.725              7.660 
[1] "0.2 - 43.8 (6.7)" "0.0 - 49.4 (7.7)"
        TCGA-F2-6879         TCGA-F2-6880         TCGA-F2-7273 
  "PPP1R12B MUTATED" "PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" 
        TCGA-F2-7276         TCGA-F2-A44G         TCGA-F2-A44H 
"PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" 
        TCGA-FB-A4P5         TCGA-FB-A4P6         TCGA-FB-A545 
"PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" 
        TCGA-FB-A5VM         TCGA-FB-A78T         TCGA-FB-A7DR 
  "PPP1R12B MUTATED" "PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" 
        TCGA-FZ-5920         TCGA-FZ-5922         TCGA-FZ-5923 
"PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" 
        TCGA-H6-8124         TCGA-H6-A45N         TCGA-H8-A6C1 
"PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" 
        TCGA-HZ-7289         TCGA-HZ-7918         TCGA-HZ-7919 
"PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" 
        TCGA-HZ-7922         TCGA-HZ-7923         TCGA-HZ-7924 
"PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" 
        TCGA-HZ-7925         TCGA-HZ-7926         TCGA-HZ-8001 
"PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" 
        TCGA-HZ-8002         TCGA-HZ-8003         TCGA-HZ-8005 
"PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" 
        TCGA-HZ-8315         TCGA-HZ-8317         TCGA-HZ-8636 
"PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE"   "PPP1R12B MUTATED" 
        TCGA-HZ-8638         TCGA-HZ-A49G         TCGA-HZ-A49H 
"PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" 
        TCGA-HZ-A4BH         TCGA-HZ-A4BK         TCGA-IB-7644 
"PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" 
        TCGA-IB-7645         TCGA-IB-7646         TCGA-IB-7647 
"PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" 
        TCGA-IB-7649         TCGA-IB-7651         TCGA-IB-7652 
"PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" 
        TCGA-IB-7885         TCGA-IB-7886         TCGA-IB-7887 
"PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" 
        TCGA-IB-7888         TCGA-IB-7889         TCGA-IB-7890 
  "PPP1R12B MUTATED" "PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" 
        TCGA-IB-7891         TCGA-IB-7893         TCGA-IB-7897 
"PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" 
        TCGA-IB-8126         TCGA-IB-8127         TCGA-IB-A5SO 
"PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" 
        TCGA-IB-A5SP         TCGA-IB-A5SQ         TCGA-IB-A5SS 
"PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" 
        TCGA-IB-A5ST         TCGA-IB-A6UG         TCGA-LB-A7SX 
"PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" 
        TCGA-OE-A75W         TCGA-PZ-A5RE         TCGA-Q3-A5QY 
"PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" 
        TCGA-US-A779         TCGA-US-A77E         TCGA-US-A77J 
"PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" 
        TCGA-F2-6879         TCGA-F2-6880         TCGA-F2-7273 
  "PPP1R12B MUTATED" "PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" 
        TCGA-F2-7276         TCGA-F2-A44G         TCGA-F2-A44H 
"PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" 
        TCGA-FB-A4P5         TCGA-FB-A4P6         TCGA-FB-A545 
"PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" 
        TCGA-FB-A5VM         TCGA-FB-A78T         TCGA-FB-A7DR 
  "PPP1R12B MUTATED" "PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" 
        TCGA-FZ-5920         TCGA-FZ-5922         TCGA-FZ-5923 
"PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" 
        TCGA-H6-8124         TCGA-H6-A45N         TCGA-H8-A6C1 
"PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" 
        TCGA-HZ-7289         TCGA-HZ-7918         TCGA-HZ-7919 
"PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" 
        TCGA-HZ-7922         TCGA-HZ-7923         TCGA-HZ-7924 
"PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" 
        TCGA-HZ-7925         TCGA-HZ-7926         TCGA-HZ-8001 
"PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" 
        TCGA-HZ-8002         TCGA-HZ-8003         TCGA-HZ-8005 
"PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" 
        TCGA-HZ-8315         TCGA-HZ-8317         TCGA-HZ-8636 
"PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE"   "PPP1R12B MUTATED" 
        TCGA-HZ-8638         TCGA-HZ-A49G         TCGA-HZ-A49H 
"PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" 
        TCGA-HZ-A4BH         TCGA-HZ-A4BK         TCGA-IB-7644 
"PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" 
        TCGA-IB-7645         TCGA-IB-7646         TCGA-IB-7647 
"PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" 
        TCGA-IB-7649         TCGA-IB-7651         TCGA-IB-7652 
"PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" 
        TCGA-IB-7885         TCGA-IB-7886         TCGA-IB-7887 
"PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" 
        TCGA-IB-7888         TCGA-IB-7889         TCGA-IB-7890 
  "PPP1R12B MUTATED" "PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" 
        TCGA-IB-7891         TCGA-IB-7893         TCGA-IB-7897 
"PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" 
        TCGA-IB-8126         TCGA-IB-8127         TCGA-IB-A5SO 
"PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" 
        TCGA-IB-A5SP         TCGA-IB-A5SQ         TCGA-IB-A5SS 
"PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" 
        TCGA-IB-A5ST         TCGA-IB-A6UG         TCGA-LB-A7SX 
"PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" 
        TCGA-OE-A75W         TCGA-PZ-A5RE         TCGA-Q3-A5QY 
"PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" 
        TCGA-US-A779         TCGA-US-A77E         TCGA-US-A77J 
"PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" 
        TCGA-F2-6879         TCGA-F2-6880         TCGA-F2-7273 
  "PPP1R12B MUTATED" "PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" 
        TCGA-F2-7276         TCGA-F2-A44G         TCGA-F2-A44H 
"PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" 
        TCGA-FB-A4P5         TCGA-FB-A4P6         TCGA-FB-A545 
"PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" 
        TCGA-FB-A5VM         TCGA-FB-A78T         TCGA-FB-A7DR 
  "PPP1R12B MUTATED" "PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" 
        TCGA-FZ-5920         TCGA-FZ-5922         TCGA-FZ-5923 
"PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" 
        TCGA-H6-8124         TCGA-H6-A45N         TCGA-H8-A6C1 
"PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" 
        TCGA-HZ-7289         TCGA-HZ-7918         TCGA-HZ-7919 
"PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" 
        TCGA-HZ-7922         TCGA-HZ-7923         TCGA-HZ-7924 
"PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" 
        TCGA-HZ-7925         TCGA-HZ-7926         TCGA-HZ-8001 
"PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" 
        TCGA-HZ-8002         TCGA-HZ-8003         TCGA-HZ-8005 
"PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" 
        TCGA-HZ-8315         TCGA-HZ-8317         TCGA-HZ-8636 
"PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE"   "PPP1R12B MUTATED" 
        TCGA-HZ-8638         TCGA-HZ-A49G         TCGA-HZ-A49H 
"PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" 
        TCGA-HZ-A4BH         TCGA-HZ-A4BK         TCGA-IB-7644 
"PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" 
        TCGA-IB-7645         TCGA-IB-7646         TCGA-IB-7647 
"PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" 
        TCGA-IB-7649         TCGA-IB-7651         TCGA-IB-7652 
"PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" 
        TCGA-IB-7885         TCGA-IB-7886         TCGA-IB-7887 
"PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" 
        TCGA-IB-7888         TCGA-IB-7889         TCGA-IB-7890 
  "PPP1R12B MUTATED" "PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" 
        TCGA-IB-7891         TCGA-IB-7893         TCGA-IB-7897 
"PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" 
        TCGA-IB-8126         TCGA-IB-8127         TCGA-IB-A5SO 
"PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" 
        TCGA-IB-A5SP         TCGA-IB-A5SQ         TCGA-IB-A5SS 
"PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" 
        TCGA-IB-A5ST         TCGA-IB-A6UG         TCGA-LB-A7SX 
"PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" 
        TCGA-OE-A75W         TCGA-PZ-A5RE         TCGA-Q3-A5QY 
"PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" 
        TCGA-US-A779         TCGA-US-A77E         TCGA-US-A77J 
"PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" 
[1] "hr=" "1.5"
D359V2, continuous
                    vv
clus                 STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  PPP1R12B MUTATED          0        1         1         1         0        1
  PPP1R12B WILD-TYPE        1        3        10        50         2        2
D359V3, multiclass
                    vv
clus                 T1+T2 T3+T4
  PPP1R12B MUTATED       1     3
  PPP1R12B WILD-TYPE     5    63
D359V4, multiclass
       clus
vv      PPP1R12B MUTATED PPP1R12B WILD-TYPE
  T1+T2                1                  5
  T3+T4                3                 63
D359V5, binary
                    cls
clus                  0  1
  PPP1R12B MUTATED    3  1
  PPP1R12B WILD-TYPE 14 53
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  PPP1R12B MUTATED      3    1
  PPP1R12B WILD-TYPE   14   53
   clus
vv  PPP1R12B MUTATED PPP1R12B WILD-TYPE
  0                3                 14
  1                1                 53
                    vv
clus                 M0 M1 MX
  PPP1R12B MUTATED    3  1  0
  PPP1R12B WILD-TYPE 36  2 30
D359V6, multiclass
    clus
vv   PPP1R12B MUTATED PPP1R12B WILD-TYPE
  M0                3                 36
  M1                1                  2
  MX                0                 30
D359V7, binary
                    cls
clus                  0  1
  PPP1R12B MUTATED    2  2
  PPP1R12B WILD-TYPE 34 34
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  PPP1R12B MUTATED      2    2
  PPP1R12B WILD-TYPE   34   34
        clus
vv       PPP1R12B MUTATED PPP1R12B WILD-TYPE
  FEMALE                2                 34
  MALE                  2                 34
                    vv
clus                 PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  PPP1R12B MUTATED                                     3
  PPP1R12B WILD-TYPE                                  62
                    vv
clus                 PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  PPP1R12B MUTATED                                       0
  PPP1R12B WILD-TYPE                                     4
                    vv
clus                 PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  PPP1R12B MUTATED                                                  0
  PPP1R12B WILD-TYPE                                                2
D359V8, multiclass
                                                  clus
vv                                                 PPP1R12B MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                             3
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                           0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                0
                                                  clus
vv                                                 PPP1R12B WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                              62
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                             4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                  2
D359V9, continuous
[1] "Remove cluster labels:" "PPP1R12B MUTATED"      
clus
  PPP1R12B MUTATED PPP1R12B WILD-TYPE 
                 1                 21 
        TCGA-F2-6880         TCGA-FB-A4P5         TCGA-FB-A4P6 
"PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" 
        TCGA-FB-A78T         TCGA-FB-A7DR         TCGA-H6-8124 
"PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" 
        TCGA-H6-A45N         TCGA-H8-A6C1         TCGA-IB-7644 
"PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" 
        TCGA-IB-7649         TCGA-IB-7651         TCGA-IB-7885 
"PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" 
        TCGA-IB-7886         TCGA-IB-7887         TCGA-IB-7891 
"PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" 
        TCGA-IB-8126         TCGA-IB-8127         TCGA-IB-A5SS 
"PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" 
        TCGA-IB-A6UG         TCGA-LB-A7SX         TCGA-OE-A75W 
"PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" 
D359V10, continuous
[1] "Remove cluster labels:" "PPP1R12B MUTATED"      
clus
  PPP1R12B MUTATED PPP1R12B WILD-TYPE 
                 1                 18 
        TCGA-FB-A4P5         TCGA-FB-A4P6         TCGA-FB-A78T 
"PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" 
        TCGA-FB-A7DR         TCGA-H6-8124         TCGA-H8-A6C1 
"PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" 
        TCGA-IB-7644         TCGA-IB-7649         TCGA-IB-7651 
"PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" 
        TCGA-IB-7885         TCGA-IB-7886         TCGA-IB-7891 
"PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" 
        TCGA-IB-8126         TCGA-IB-8127         TCGA-IB-A5SS 
"PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" 
        TCGA-IB-A6UG         TCGA-LB-A7SX         TCGA-OE-A75W 
"PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" "PPP1R12B WILD-TYPE" 
                    vv
clus                 R0 R1 RX
  PPP1R12B MUTATED    3  1  0
  PPP1R12B WILD-TYPE 39 23  2
D359V11, multiclass
    clus
vv   PPP1R12B MUTATED PPP1R12B WILD-TYPE
  R0                3                 39
  R1                1                 23
  RX                0                  2
D359V12, continuous

Clustering(360) Variable = ENG MUTATION ANALYSIS
D360V1, survival
               sevent
clus2            0  1
  ENG MUTATED    1  1
  ENG WILD-TYPE 39 28
  ENG MUTATED ENG WILD-TYPE 
            2            67 
  ENG MUTATED ENG WILD-TYPE 
            1            28 
$`ENG MUTATED`
TCGA-IB-7891 TCGA-IB-7897 
       16.04        15.98 

$`ENG WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P5 TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR 
        0.13        11.93        12.66         2.47         0.03         5.46 
TCGA-FZ-5920 TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 
        2.01        36.20        20.81        12.89         7.66        13.02 
TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 
        7.89         0.92         0.66         0.13         0.26        12.13 
TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 
       11.87         0.26         0.62         0.79         0.69         3.95 
TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H 
        0.92         0.53         0.16         2.99         0.76         0.95 
TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 
        6.38         1.51        11.41        49.38         4.77        21.90 
TCGA-IB-7649 TCGA-IB-7651 TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 
       15.35        19.82        15.65        27.98         4.04         3.62 
TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7893 TCGA-IB-8126 TCGA-IB-8127 
       43.79        15.81        19.66         3.85         0.56        17.16 
TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG 
       10.82         9.86         7.20        15.12         0.26         1.35 
TCGA-LB-A7SX TCGA-OE-A75W TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E 
        4.18         3.62         8.12        13.68        16.80        14.14 
TCGA-US-A77J 
       18.67 

  ENG MUTATED ENG WILD-TYPE 
        15.98          0.03 
  ENG MUTATED ENG WILD-TYPE 
        16.04         49.38 
  ENG MUTATED ENG WILD-TYPE 
        16.01          7.20 
[1] "16.0 - 16.0 (16.0)" "0.0 - 49.4 (7.2)"  
   TCGA-F2-6879    TCGA-F2-6880    TCGA-F2-7273    TCGA-F2-7276    TCGA-F2-A44G 
"ENG WILD-TYPE" "ENG WILD-TYPE" "ENG WILD-TYPE" "ENG WILD-TYPE" "ENG WILD-TYPE" 
   TCGA-F2-A44H    TCGA-FB-A4P5    TCGA-FB-A4P6    TCGA-FB-A545    TCGA-FB-A5VM 
"ENG WILD-TYPE" "ENG WILD-TYPE" "ENG WILD-TYPE" "ENG WILD-TYPE" "ENG WILD-TYPE" 
   TCGA-FB-A78T    TCGA-FB-A7DR    TCGA-FZ-5920    TCGA-FZ-5922    TCGA-FZ-5923 
"ENG WILD-TYPE" "ENG WILD-TYPE" "ENG WILD-TYPE" "ENG WILD-TYPE" "ENG WILD-TYPE" 
   TCGA-H6-8124    TCGA-H6-A45N    TCGA-H8-A6C1    TCGA-HZ-7289    TCGA-HZ-7918 
"ENG WILD-TYPE" "ENG WILD-TYPE" "ENG WILD-TYPE" "ENG WILD-TYPE" "ENG WILD-TYPE" 
   TCGA-HZ-7919    TCGA-HZ-7922    TCGA-HZ-7923    TCGA-HZ-7924    TCGA-HZ-7925 
"ENG WILD-TYPE" "ENG WILD-TYPE" "ENG WILD-TYPE" "ENG WILD-TYPE" "ENG WILD-TYPE" 
   TCGA-HZ-7926    TCGA-HZ-8001    TCGA-HZ-8002    TCGA-HZ-8003    TCGA-HZ-8005 
"ENG WILD-TYPE" "ENG WILD-TYPE" "ENG WILD-TYPE" "ENG WILD-TYPE" "ENG WILD-TYPE" 
   TCGA-HZ-8315    TCGA-HZ-8317    TCGA-HZ-8636    TCGA-HZ-8638    TCGA-HZ-A49G 
"ENG WILD-TYPE" "ENG WILD-TYPE" "ENG WILD-TYPE" "ENG WILD-TYPE" "ENG WILD-TYPE" 
   TCGA-HZ-A49H    TCGA-HZ-A4BH    TCGA-HZ-A4BK    TCGA-IB-7644    TCGA-IB-7645 
"ENG WILD-TYPE" "ENG WILD-TYPE" "ENG WILD-TYPE" "ENG WILD-TYPE" "ENG WILD-TYPE" 
   TCGA-IB-7646    TCGA-IB-7647    TCGA-IB-7649    TCGA-IB-7651    TCGA-IB-7652 
"ENG WILD-TYPE" "ENG WILD-TYPE" "ENG WILD-TYPE" "ENG WILD-TYPE" "ENG WILD-TYPE" 
   TCGA-IB-7885    TCGA-IB-7886    TCGA-IB-7887    TCGA-IB-7888    TCGA-IB-7889 
"ENG WILD-TYPE" "ENG WILD-TYPE" "ENG WILD-TYPE" "ENG WILD-TYPE" "ENG WILD-TYPE" 
   TCGA-IB-7890    TCGA-IB-7891    TCGA-IB-7893    TCGA-IB-7897    TCGA-IB-8126 
"ENG WILD-TYPE"   "ENG MUTATED" "ENG WILD-TYPE"   "ENG MUTATED" "ENG WILD-TYPE" 
   TCGA-IB-8127    TCGA-IB-A5SO    TCGA-IB-A5SP    TCGA-IB-A5SQ    TCGA-IB-A5SS 
"ENG WILD-TYPE" "ENG WILD-TYPE" "ENG WILD-TYPE" "ENG WILD-TYPE" "ENG WILD-TYPE" 
   TCGA-IB-A5ST    TCGA-IB-A6UG    TCGA-LB-A7SX    TCGA-OE-A75W    TCGA-PZ-A5RE 
"ENG WILD-TYPE" "ENG WILD-TYPE" "ENG WILD-TYPE" "ENG WILD-TYPE" "ENG WILD-TYPE" 
   TCGA-Q3-A5QY    TCGA-US-A779    TCGA-US-A77E    TCGA-US-A77J 
"ENG WILD-TYPE" "ENG WILD-TYPE" "ENG WILD-TYPE" "ENG WILD-TYPE" 
   TCGA-F2-6879    TCGA-F2-6880    TCGA-F2-7273    TCGA-F2-7276    TCGA-F2-A44G 
"ENG WILD-TYPE" "ENG WILD-TYPE" "ENG WILD-TYPE" "ENG WILD-TYPE" "ENG WILD-TYPE" 
   TCGA-F2-A44H    TCGA-FB-A4P5    TCGA-FB-A4P6    TCGA-FB-A545    TCGA-FB-A5VM 
"ENG WILD-TYPE" "ENG WILD-TYPE" "ENG WILD-TYPE" "ENG WILD-TYPE" "ENG WILD-TYPE" 
   TCGA-FB-A78T    TCGA-FB-A7DR    TCGA-FZ-5920    TCGA-FZ-5922    TCGA-FZ-5923 
"ENG WILD-TYPE" "ENG WILD-TYPE" "ENG WILD-TYPE" "ENG WILD-TYPE" "ENG WILD-TYPE" 
   TCGA-H6-8124    TCGA-H6-A45N    TCGA-H8-A6C1    TCGA-HZ-7289    TCGA-HZ-7918 
"ENG WILD-TYPE" "ENG WILD-TYPE" "ENG WILD-TYPE" "ENG WILD-TYPE" "ENG WILD-TYPE" 
   TCGA-HZ-7919    TCGA-HZ-7922    TCGA-HZ-7923    TCGA-HZ-7924    TCGA-HZ-7925 
"ENG WILD-TYPE" "ENG WILD-TYPE" "ENG WILD-TYPE" "ENG WILD-TYPE" "ENG WILD-TYPE" 
   TCGA-HZ-7926    TCGA-HZ-8001    TCGA-HZ-8002    TCGA-HZ-8003    TCGA-HZ-8005 
"ENG WILD-TYPE" "ENG WILD-TYPE" "ENG WILD-TYPE" "ENG WILD-TYPE" "ENG WILD-TYPE" 
   TCGA-HZ-8315    TCGA-HZ-8317    TCGA-HZ-8636    TCGA-HZ-8638    TCGA-HZ-A49G 
"ENG WILD-TYPE" "ENG WILD-TYPE" "ENG WILD-TYPE" "ENG WILD-TYPE" "ENG WILD-TYPE" 
   TCGA-HZ-A49H    TCGA-HZ-A4BH    TCGA-HZ-A4BK    TCGA-IB-7644    TCGA-IB-7645 
"ENG WILD-TYPE" "ENG WILD-TYPE" "ENG WILD-TYPE" "ENG WILD-TYPE" "ENG WILD-TYPE" 
   TCGA-IB-7646    TCGA-IB-7647    TCGA-IB-7649    TCGA-IB-7651    TCGA-IB-7652 
"ENG WILD-TYPE" "ENG WILD-TYPE" "ENG WILD-TYPE" "ENG WILD-TYPE" "ENG WILD-TYPE" 
   TCGA-IB-7885    TCGA-IB-7886    TCGA-IB-7887    TCGA-IB-7888    TCGA-IB-7889 
"ENG WILD-TYPE" "ENG WILD-TYPE" "ENG WILD-TYPE" "ENG WILD-TYPE" "ENG WILD-TYPE" 
   TCGA-IB-7890    TCGA-IB-7891    TCGA-IB-7893    TCGA-IB-7897    TCGA-IB-8126 
"ENG WILD-TYPE"   "ENG MUTATED" "ENG WILD-TYPE"   "ENG MUTATED" "ENG WILD-TYPE" 
   TCGA-IB-8127    TCGA-IB-A5SO    TCGA-IB-A5SP    TCGA-IB-A5SQ    TCGA-IB-A5SS 
"ENG WILD-TYPE" "ENG WILD-TYPE" "ENG WILD-TYPE" "ENG WILD-TYPE" "ENG WILD-TYPE" 
   TCGA-IB-A5ST    TCGA-IB-A6UG    TCGA-LB-A7SX    TCGA-OE-A75W    TCGA-PZ-A5RE 
"ENG WILD-TYPE" "ENG WILD-TYPE" "ENG WILD-TYPE" "ENG WILD-TYPE" "ENG WILD-TYPE" 
   TCGA-Q3-A5QY    TCGA-US-A779    TCGA-US-A77E    TCGA-US-A77J 
"ENG WILD-TYPE" "ENG WILD-TYPE" "ENG WILD-TYPE" "ENG WILD-TYPE" 
   TCGA-F2-6879    TCGA-F2-6880    TCGA-F2-7273    TCGA-F2-7276    TCGA-F2-A44G 
"ENG WILD-TYPE" "ENG WILD-TYPE" "ENG WILD-TYPE" "ENG WILD-TYPE" "ENG WILD-TYPE" 
   TCGA-F2-A44H    TCGA-FB-A4P5    TCGA-FB-A4P6    TCGA-FB-A545    TCGA-FB-A5VM 
"ENG WILD-TYPE" "ENG WILD-TYPE" "ENG WILD-TYPE" "ENG WILD-TYPE" "ENG WILD-TYPE" 
   TCGA-FB-A78T    TCGA-FB-A7DR    TCGA-FZ-5920    TCGA-FZ-5922    TCGA-FZ-5923 
"ENG WILD-TYPE" "ENG WILD-TYPE" "ENG WILD-TYPE" "ENG WILD-TYPE" "ENG WILD-TYPE" 
   TCGA-H6-8124    TCGA-H6-A45N    TCGA-H8-A6C1    TCGA-HZ-7289    TCGA-HZ-7918 
"ENG WILD-TYPE" "ENG WILD-TYPE" "ENG WILD-TYPE" "ENG WILD-TYPE" "ENG WILD-TYPE" 
   TCGA-HZ-7919    TCGA-HZ-7922    TCGA-HZ-7923    TCGA-HZ-7924    TCGA-HZ-7925 
"ENG WILD-TYPE" "ENG WILD-TYPE" "ENG WILD-TYPE" "ENG WILD-TYPE" "ENG WILD-TYPE" 
   TCGA-HZ-7926    TCGA-HZ-8001    TCGA-HZ-8002    TCGA-HZ-8003    TCGA-HZ-8005 
"ENG WILD-TYPE" "ENG WILD-TYPE" "ENG WILD-TYPE" "ENG WILD-TYPE" "ENG WILD-TYPE" 
   TCGA-HZ-8315    TCGA-HZ-8317    TCGA-HZ-8636    TCGA-HZ-8638    TCGA-HZ-A49G 
"ENG WILD-TYPE" "ENG WILD-TYPE" "ENG WILD-TYPE" "ENG WILD-TYPE" "ENG WILD-TYPE" 
   TCGA-HZ-A49H    TCGA-HZ-A4BH    TCGA-HZ-A4BK    TCGA-IB-7644    TCGA-IB-7645 
"ENG WILD-TYPE" "ENG WILD-TYPE" "ENG WILD-TYPE" "ENG WILD-TYPE" "ENG WILD-TYPE" 
   TCGA-IB-7646    TCGA-IB-7647    TCGA-IB-7649    TCGA-IB-7651    TCGA-IB-7652 
"ENG WILD-TYPE" "ENG WILD-TYPE" "ENG WILD-TYPE" "ENG WILD-TYPE" "ENG WILD-TYPE" 
   TCGA-IB-7885    TCGA-IB-7886    TCGA-IB-7887    TCGA-IB-7888    TCGA-IB-7889 
"ENG WILD-TYPE" "ENG WILD-TYPE" "ENG WILD-TYPE" "ENG WILD-TYPE" "ENG WILD-TYPE" 
   TCGA-IB-7890    TCGA-IB-7891    TCGA-IB-7893    TCGA-IB-7897    TCGA-IB-8126 
"ENG WILD-TYPE"   "ENG MUTATED" "ENG WILD-TYPE"   "ENG MUTATED" "ENG WILD-TYPE" 
   TCGA-IB-8127    TCGA-IB-A5SO    TCGA-IB-A5SP    TCGA-IB-A5SQ    TCGA-IB-A5SS 
"ENG WILD-TYPE" "ENG WILD-TYPE" "ENG WILD-TYPE" "ENG WILD-TYPE" "ENG WILD-TYPE" 
   TCGA-IB-A5ST    TCGA-IB-A6UG    TCGA-LB-A7SX    TCGA-OE-A75W    TCGA-PZ-A5RE 
"ENG WILD-TYPE" "ENG WILD-TYPE" "ENG WILD-TYPE" "ENG WILD-TYPE" "ENG WILD-TYPE" 
   TCGA-Q3-A5QY    TCGA-US-A779    TCGA-US-A77E    TCGA-US-A77J 
"ENG WILD-TYPE" "ENG WILD-TYPE" "ENG WILD-TYPE" "ENG WILD-TYPE" 
[1] "Remove cluster labels:" "ENG MUTATED"           
clus
  ENG MUTATED ENG WILD-TYPE 
            2            67 
   TCGA-F2-6879    TCGA-F2-6880    TCGA-F2-7273    TCGA-F2-7276    TCGA-F2-A44G 
"ENG WILD-TYPE" "ENG WILD-TYPE" "ENG WILD-TYPE" "ENG WILD-TYPE" "ENG WILD-TYPE" 
   TCGA-F2-A44H    TCGA-FB-A4P5    TCGA-FB-A4P6    TCGA-FB-A545    TCGA-FB-A5VM 
"ENG WILD-TYPE" "ENG WILD-TYPE" "ENG WILD-TYPE" "ENG WILD-TYPE" "ENG WILD-TYPE" 
   TCGA-FB-A78T    TCGA-FB-A7DR    TCGA-FZ-5920    TCGA-FZ-5922    TCGA-FZ-5923 
"ENG WILD-TYPE" "ENG WILD-TYPE" "ENG WILD-TYPE" "ENG WILD-TYPE" "ENG WILD-TYPE" 
   TCGA-H6-8124    TCGA-H6-A45N    TCGA-H8-A6C1    TCGA-HZ-7289    TCGA-HZ-7918 
"ENG WILD-TYPE" "ENG WILD-TYPE" "ENG WILD-TYPE" "ENG WILD-TYPE" "ENG WILD-TYPE" 
   TCGA-HZ-7919    TCGA-HZ-7922    TCGA-HZ-7923    TCGA-HZ-7924    TCGA-HZ-7925 
"ENG WILD-TYPE" "ENG WILD-TYPE" "ENG WILD-TYPE" "ENG WILD-TYPE" "ENG WILD-TYPE" 
   TCGA-HZ-7926    TCGA-HZ-8001    TCGA-HZ-8002    TCGA-HZ-8003    TCGA-HZ-8005 
"ENG WILD-TYPE" "ENG WILD-TYPE" "ENG WILD-TYPE" "ENG WILD-TYPE" "ENG WILD-TYPE" 
   TCGA-HZ-8315    TCGA-HZ-8317    TCGA-HZ-8636    TCGA-HZ-8638    TCGA-HZ-A49G 
"ENG WILD-TYPE" "ENG WILD-TYPE" "ENG WILD-TYPE" "ENG WILD-TYPE" "ENG WILD-TYPE" 
   TCGA-HZ-A49H    TCGA-HZ-A4BH    TCGA-HZ-A4BK    TCGA-IB-7644    TCGA-IB-7645 
"ENG WILD-TYPE" "ENG WILD-TYPE" "ENG WILD-TYPE" "ENG WILD-TYPE" "ENG WILD-TYPE" 
   TCGA-IB-7646    TCGA-IB-7647    TCGA-IB-7649    TCGA-IB-7651    TCGA-IB-7652 
"ENG WILD-TYPE" "ENG WILD-TYPE" "ENG WILD-TYPE" "ENG WILD-TYPE" "ENG WILD-TYPE" 
   TCGA-IB-7885    TCGA-IB-7886    TCGA-IB-7887    TCGA-IB-7888    TCGA-IB-7889 
"ENG WILD-TYPE" "ENG WILD-TYPE" "ENG WILD-TYPE" "ENG WILD-TYPE" "ENG WILD-TYPE" 
   TCGA-IB-7890    TCGA-IB-7893    TCGA-IB-8126    TCGA-IB-8127    TCGA-IB-A5SO 
"ENG WILD-TYPE" "ENG WILD-TYPE" "ENG WILD-TYPE" "ENG WILD-TYPE" "ENG WILD-TYPE" 
   TCGA-IB-A5SP    TCGA-IB-A5SQ    TCGA-IB-A5SS    TCGA-IB-A5ST    TCGA-IB-A6UG 
"ENG WILD-TYPE" "ENG WILD-TYPE" "ENG WILD-TYPE" "ENG WILD-TYPE" "ENG WILD-TYPE" 
   TCGA-LB-A7SX    TCGA-OE-A75W    TCGA-PZ-A5RE    TCGA-Q3-A5QY    TCGA-US-A779 
"ENG WILD-TYPE" "ENG WILD-TYPE" "ENG WILD-TYPE" "ENG WILD-TYPE" "ENG WILD-TYPE" 
   TCGA-US-A77E    TCGA-US-A77J 
"ENG WILD-TYPE" "ENG WILD-TYPE" 
D360V2, continuous
               vv
clus            STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  ENG MUTATED          0        1         0         2         0        0
  ENG WILD-TYPE        1        3        11        49         2        3
D360V3, multiclass
               vv
clus            T1+T2 T3+T4
  ENG MUTATED       1     2
  ENG WILD-TYPE     5    64
D360V4, multiclass
       clus
vv      ENG MUTATED ENG WILD-TYPE
  T1+T2           1             5
  T3+T4           2            64
D360V5, binary
               cls
clus             0  1
  ENG MUTATED    1  2
  ENG WILD-TYPE 16 52
[1] "tbl2"
               cls
clus            [,1] [,2]
  ENG MUTATED      1    2
  ENG WILD-TYPE   16   52
   clus
vv  ENG MUTATED ENG WILD-TYPE
  0           1            16
  1           2            52
               vv
clus            M0 M1 MX
  ENG MUTATED    2  0  1
  ENG WILD-TYPE 37  3 29
D360V6, multiclass
    clus
vv   ENG MUTATED ENG WILD-TYPE
  M0           2            37
  M1           0             3
  MX           1            29
D360V7, binary
               cls
clus             0  1
  ENG MUTATED    1  2
  ENG WILD-TYPE 35 34
[1] "tbl2"
               cls
clus            [,1] [,2]
  ENG MUTATED      1    2
  ENG WILD-TYPE   35   34
        clus
vv       ENG MUTATED ENG WILD-TYPE
  FEMALE           1            35
  MALE             2            34
               vv
clus            PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  ENG MUTATED                                     3
  ENG WILD-TYPE                                  62
               vv
clus            PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  ENG MUTATED                                       0
  ENG WILD-TYPE                                     4
               vv
clus            PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  ENG MUTATED                                                  0
  ENG WILD-TYPE                                                2
D360V8, multiclass
                                                  clus
vv                                                 ENG MUTATED ENG WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                        3            62
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                      0             4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA           0             2
D360V9, continuous
[1] "Remove cluster labels:" "ENG MUTATED"           
clus
  ENG MUTATED ENG WILD-TYPE 
            1            21 
   TCGA-F2-6880    TCGA-FB-A4P5    TCGA-FB-A4P6    TCGA-FB-A5VM    TCGA-FB-A78T 
"ENG WILD-TYPE" "ENG WILD-TYPE" "ENG WILD-TYPE" "ENG WILD-TYPE" "ENG WILD-TYPE" 
   TCGA-FB-A7DR    TCGA-H6-8124    TCGA-H6-A45N    TCGA-H8-A6C1    TCGA-IB-7644 
"ENG WILD-TYPE" "ENG WILD-TYPE" "ENG WILD-TYPE" "ENG WILD-TYPE" "ENG WILD-TYPE" 
   TCGA-IB-7649    TCGA-IB-7651    TCGA-IB-7885    TCGA-IB-7886    TCGA-IB-7887 
"ENG WILD-TYPE" "ENG WILD-TYPE" "ENG WILD-TYPE" "ENG WILD-TYPE" "ENG WILD-TYPE" 
   TCGA-IB-8126    TCGA-IB-8127    TCGA-IB-A5SS    TCGA-IB-A6UG    TCGA-LB-A7SX 
"ENG WILD-TYPE" "ENG WILD-TYPE" "ENG WILD-TYPE" "ENG WILD-TYPE" "ENG WILD-TYPE" 
   TCGA-OE-A75W 
"ENG WILD-TYPE" 
D360V10, continuous
[1] "Remove cluster labels:" "ENG MUTATED"           
clus
  ENG MUTATED ENG WILD-TYPE 
            1            18 
   TCGA-FB-A4P5    TCGA-FB-A4P6    TCGA-FB-A5VM    TCGA-FB-A78T    TCGA-FB-A7DR 
"ENG WILD-TYPE" "ENG WILD-TYPE" "ENG WILD-TYPE" "ENG WILD-TYPE" "ENG WILD-TYPE" 
   TCGA-H6-8124    TCGA-H8-A6C1    TCGA-IB-7644    TCGA-IB-7649    TCGA-IB-7651 
"ENG WILD-TYPE" "ENG WILD-TYPE" "ENG WILD-TYPE" "ENG WILD-TYPE" "ENG WILD-TYPE" 
   TCGA-IB-7885    TCGA-IB-7886    TCGA-IB-8126    TCGA-IB-8127    TCGA-IB-A5SS 
"ENG WILD-TYPE" "ENG WILD-TYPE" "ENG WILD-TYPE" "ENG WILD-TYPE" "ENG WILD-TYPE" 
   TCGA-IB-A6UG    TCGA-LB-A7SX    TCGA-OE-A75W 
"ENG WILD-TYPE" "ENG WILD-TYPE" "ENG WILD-TYPE" 
               vv
clus            R0 R1 RX
  ENG MUTATED    3  0  0
  ENG WILD-TYPE 39 24  2
D360V11, multiclass
    clus
vv   ENG MUTATED ENG WILD-TYPE
  R0           3            39
  R1           0            24
  RX           0             2
D360V12, continuous

Clustering(361) Variable = ZHX3 MUTATION ANALYSIS
D361V1, survival
                sevent
clus2             0  1
  ZHX3 MUTATED    3  3
  ZHX3 WILD-TYPE 37 26
  ZHX3 MUTATED ZHX3 WILD-TYPE 
             6             63 
  ZHX3 MUTATED ZHX3 WILD-TYPE 
             3             26 
$`ZHX3 MUTATED`
TCGA-FZ-5922 TCGA-HZ-7922 TCGA-HZ-A49H TCGA-HZ-A4BK TCGA-IB-7651 TCGA-IB-7893 
       36.20         0.13         0.95         1.51        19.82         3.85 

$`ZHX3 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P5 TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR 
        0.13        11.93        12.66         2.47         0.03         5.46 
TCGA-FZ-5920 TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7289 
        2.01        20.81        12.89         7.66        13.02         7.89 
TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 
        0.92         0.66         0.26        12.13        11.87         0.26 
TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 
        0.62         0.79         0.69         3.95         0.92         0.53 
TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A4BH TCGA-IB-7644 TCGA-IB-7645 
        0.16         2.99         0.76         6.38        11.41        49.38 
TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7886 
        4.77        21.90        15.35        15.65        27.98         4.04 
TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-7897 
        3.62        43.79        15.81        19.66        16.04        15.98 
TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS 
        0.56        17.16        10.82         9.86         7.20        15.12 
TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W TCGA-PZ-A5RE TCGA-Q3-A5QY 
        0.26         1.35         4.18         3.62         8.12        13.68 
TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
       16.80        14.14        18.67 

  ZHX3 MUTATED ZHX3 WILD-TYPE 
          0.13           0.03 
  ZHX3 MUTATED ZHX3 WILD-TYPE 
         36.20          49.38 
  ZHX3 MUTATED ZHX3 WILD-TYPE 
          2.68           7.89 
[1] "0.1 - 36.2 (2.7)" "0.0 - 49.4 (7.9)"
    TCGA-F2-6879     TCGA-F2-6880     TCGA-F2-7273     TCGA-F2-7276 
"ZHX3 WILD-TYPE" "ZHX3 WILD-TYPE" "ZHX3 WILD-TYPE" "ZHX3 WILD-TYPE" 
    TCGA-F2-A44G     TCGA-F2-A44H     TCGA-FB-A4P5     TCGA-FB-A4P6 
"ZHX3 WILD-TYPE" "ZHX3 WILD-TYPE" "ZHX3 WILD-TYPE" "ZHX3 WILD-TYPE" 
    TCGA-FB-A545     TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-FB-A7DR 
"ZHX3 WILD-TYPE" "ZHX3 WILD-TYPE" "ZHX3 WILD-TYPE" "ZHX3 WILD-TYPE" 
    TCGA-FZ-5920     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-H6-8124 
"ZHX3 WILD-TYPE"   "ZHX3 MUTATED" "ZHX3 WILD-TYPE" "ZHX3 WILD-TYPE" 
    TCGA-H6-A45N     TCGA-H8-A6C1     TCGA-HZ-7289     TCGA-HZ-7918 
"ZHX3 WILD-TYPE" "ZHX3 WILD-TYPE" "ZHX3 WILD-TYPE" "ZHX3 WILD-TYPE" 
    TCGA-HZ-7919     TCGA-HZ-7922     TCGA-HZ-7923     TCGA-HZ-7924 
"ZHX3 WILD-TYPE"   "ZHX3 MUTATED" "ZHX3 WILD-TYPE" "ZHX3 WILD-TYPE" 
    TCGA-HZ-7925     TCGA-HZ-7926     TCGA-HZ-8001     TCGA-HZ-8002 
"ZHX3 WILD-TYPE" "ZHX3 WILD-TYPE" "ZHX3 WILD-TYPE" "ZHX3 WILD-TYPE" 
    TCGA-HZ-8003     TCGA-HZ-8005     TCGA-HZ-8315     TCGA-HZ-8317 
"ZHX3 WILD-TYPE" "ZHX3 WILD-TYPE" "ZHX3 WILD-TYPE" "ZHX3 WILD-TYPE" 
    TCGA-HZ-8636     TCGA-HZ-8638     TCGA-HZ-A49G     TCGA-HZ-A49H 
"ZHX3 WILD-TYPE" "ZHX3 WILD-TYPE" "ZHX3 WILD-TYPE"   "ZHX3 MUTATED" 
    TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-IB-7644     TCGA-IB-7645 
"ZHX3 WILD-TYPE"   "ZHX3 MUTATED" "ZHX3 WILD-TYPE" "ZHX3 WILD-TYPE" 
    TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7651 
"ZHX3 WILD-TYPE" "ZHX3 WILD-TYPE" "ZHX3 WILD-TYPE"   "ZHX3 MUTATED" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887 
"ZHX3 WILD-TYPE" "ZHX3 WILD-TYPE" "ZHX3 WILD-TYPE" "ZHX3 WILD-TYPE" 
    TCGA-IB-7888     TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891 
"ZHX3 WILD-TYPE" "ZHX3 WILD-TYPE" "ZHX3 WILD-TYPE" "ZHX3 WILD-TYPE" 
    TCGA-IB-7893     TCGA-IB-7897     TCGA-IB-8126     TCGA-IB-8127 
  "ZHX3 MUTATED" "ZHX3 WILD-TYPE" "ZHX3 WILD-TYPE" "ZHX3 WILD-TYPE" 
    TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS 
"ZHX3 WILD-TYPE" "ZHX3 WILD-TYPE" "ZHX3 WILD-TYPE" "ZHX3 WILD-TYPE" 
    TCGA-IB-A5ST     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
"ZHX3 WILD-TYPE" "ZHX3 WILD-TYPE" "ZHX3 WILD-TYPE" "ZHX3 WILD-TYPE" 
    TCGA-PZ-A5RE     TCGA-Q3-A5QY     TCGA-US-A779     TCGA-US-A77E 
"ZHX3 WILD-TYPE" "ZHX3 WILD-TYPE" "ZHX3 WILD-TYPE" "ZHX3 WILD-TYPE" 
    TCGA-US-A77J 
"ZHX3 WILD-TYPE" 
    TCGA-F2-6879     TCGA-F2-6880     TCGA-F2-7273     TCGA-F2-7276 
"ZHX3 WILD-TYPE" "ZHX3 WILD-TYPE" "ZHX3 WILD-TYPE" "ZHX3 WILD-TYPE" 
    TCGA-F2-A44G     TCGA-F2-A44H     TCGA-FB-A4P5     TCGA-FB-A4P6 
"ZHX3 WILD-TYPE" "ZHX3 WILD-TYPE" "ZHX3 WILD-TYPE" "ZHX3 WILD-TYPE" 
    TCGA-FB-A545     TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-FB-A7DR 
"ZHX3 WILD-TYPE" "ZHX3 WILD-TYPE" "ZHX3 WILD-TYPE" "ZHX3 WILD-TYPE" 
    TCGA-FZ-5920     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-H6-8124 
"ZHX3 WILD-TYPE"   "ZHX3 MUTATED" "ZHX3 WILD-TYPE" "ZHX3 WILD-TYPE" 
    TCGA-H6-A45N     TCGA-H8-A6C1     TCGA-HZ-7289     TCGA-HZ-7918 
"ZHX3 WILD-TYPE" "ZHX3 WILD-TYPE" "ZHX3 WILD-TYPE" "ZHX3 WILD-TYPE" 
    TCGA-HZ-7919     TCGA-HZ-7922     TCGA-HZ-7923     TCGA-HZ-7924 
"ZHX3 WILD-TYPE"   "ZHX3 MUTATED" "ZHX3 WILD-TYPE" "ZHX3 WILD-TYPE" 
    TCGA-HZ-7925     TCGA-HZ-7926     TCGA-HZ-8001     TCGA-HZ-8002 
"ZHX3 WILD-TYPE" "ZHX3 WILD-TYPE" "ZHX3 WILD-TYPE" "ZHX3 WILD-TYPE" 
    TCGA-HZ-8003     TCGA-HZ-8005     TCGA-HZ-8315     TCGA-HZ-8317 
"ZHX3 WILD-TYPE" "ZHX3 WILD-TYPE" "ZHX3 WILD-TYPE" "ZHX3 WILD-TYPE" 
    TCGA-HZ-8636     TCGA-HZ-8638     TCGA-HZ-A49G     TCGA-HZ-A49H 
"ZHX3 WILD-TYPE" "ZHX3 WILD-TYPE" "ZHX3 WILD-TYPE"   "ZHX3 MUTATED" 
    TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-IB-7644     TCGA-IB-7645 
"ZHX3 WILD-TYPE"   "ZHX3 MUTATED" "ZHX3 WILD-TYPE" "ZHX3 WILD-TYPE" 
    TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7651 
"ZHX3 WILD-TYPE" "ZHX3 WILD-TYPE" "ZHX3 WILD-TYPE"   "ZHX3 MUTATED" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887 
"ZHX3 WILD-TYPE" "ZHX3 WILD-TYPE" "ZHX3 WILD-TYPE" "ZHX3 WILD-TYPE" 
    TCGA-IB-7888     TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891 
"ZHX3 WILD-TYPE" "ZHX3 WILD-TYPE" "ZHX3 WILD-TYPE" "ZHX3 WILD-TYPE" 
    TCGA-IB-7893     TCGA-IB-7897     TCGA-IB-8126     TCGA-IB-8127 
  "ZHX3 MUTATED" "ZHX3 WILD-TYPE" "ZHX3 WILD-TYPE" "ZHX3 WILD-TYPE" 
    TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS 
"ZHX3 WILD-TYPE" "ZHX3 WILD-TYPE" "ZHX3 WILD-TYPE" "ZHX3 WILD-TYPE" 
    TCGA-IB-A5ST     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
"ZHX3 WILD-TYPE" "ZHX3 WILD-TYPE" "ZHX3 WILD-TYPE" "ZHX3 WILD-TYPE" 
    TCGA-PZ-A5RE     TCGA-Q3-A5QY     TCGA-US-A779     TCGA-US-A77E 
"ZHX3 WILD-TYPE" "ZHX3 WILD-TYPE" "ZHX3 WILD-TYPE" "ZHX3 WILD-TYPE" 
    TCGA-US-A77J 
"ZHX3 WILD-TYPE" 
    TCGA-F2-6879     TCGA-F2-6880     TCGA-F2-7273     TCGA-F2-7276 
"ZHX3 WILD-TYPE" "ZHX3 WILD-TYPE" "ZHX3 WILD-TYPE" "ZHX3 WILD-TYPE" 
    TCGA-F2-A44G     TCGA-F2-A44H     TCGA-FB-A4P5     TCGA-FB-A4P6 
"ZHX3 WILD-TYPE" "ZHX3 WILD-TYPE" "ZHX3 WILD-TYPE" "ZHX3 WILD-TYPE" 
    TCGA-FB-A545     TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-FB-A7DR 
"ZHX3 WILD-TYPE" "ZHX3 WILD-TYPE" "ZHX3 WILD-TYPE" "ZHX3 WILD-TYPE" 
    TCGA-FZ-5920     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-H6-8124 
"ZHX3 WILD-TYPE"   "ZHX3 MUTATED" "ZHX3 WILD-TYPE" "ZHX3 WILD-TYPE" 
    TCGA-H6-A45N     TCGA-H8-A6C1     TCGA-HZ-7289     TCGA-HZ-7918 
"ZHX3 WILD-TYPE" "ZHX3 WILD-TYPE" "ZHX3 WILD-TYPE" "ZHX3 WILD-TYPE" 
    TCGA-HZ-7919     TCGA-HZ-7922     TCGA-HZ-7923     TCGA-HZ-7924 
"ZHX3 WILD-TYPE"   "ZHX3 MUTATED" "ZHX3 WILD-TYPE" "ZHX3 WILD-TYPE" 
    TCGA-HZ-7925     TCGA-HZ-7926     TCGA-HZ-8001     TCGA-HZ-8002 
"ZHX3 WILD-TYPE" "ZHX3 WILD-TYPE" "ZHX3 WILD-TYPE" "ZHX3 WILD-TYPE" 
    TCGA-HZ-8003     TCGA-HZ-8005     TCGA-HZ-8315     TCGA-HZ-8317 
"ZHX3 WILD-TYPE" "ZHX3 WILD-TYPE" "ZHX3 WILD-TYPE" "ZHX3 WILD-TYPE" 
    TCGA-HZ-8636     TCGA-HZ-8638     TCGA-HZ-A49G     TCGA-HZ-A49H 
"ZHX3 WILD-TYPE" "ZHX3 WILD-TYPE" "ZHX3 WILD-TYPE"   "ZHX3 MUTATED" 
    TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-IB-7644     TCGA-IB-7645 
"ZHX3 WILD-TYPE"   "ZHX3 MUTATED" "ZHX3 WILD-TYPE" "ZHX3 WILD-TYPE" 
    TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7651 
"ZHX3 WILD-TYPE" "ZHX3 WILD-TYPE" "ZHX3 WILD-TYPE"   "ZHX3 MUTATED" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887 
"ZHX3 WILD-TYPE" "ZHX3 WILD-TYPE" "ZHX3 WILD-TYPE" "ZHX3 WILD-TYPE" 
    TCGA-IB-7888     TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891 
"ZHX3 WILD-TYPE" "ZHX3 WILD-TYPE" "ZHX3 WILD-TYPE" "ZHX3 WILD-TYPE" 
    TCGA-IB-7893     TCGA-IB-7897     TCGA-IB-8126     TCGA-IB-8127 
  "ZHX3 MUTATED" "ZHX3 WILD-TYPE" "ZHX3 WILD-TYPE" "ZHX3 WILD-TYPE" 
    TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS 
"ZHX3 WILD-TYPE" "ZHX3 WILD-TYPE" "ZHX3 WILD-TYPE" "ZHX3 WILD-TYPE" 
    TCGA-IB-A5ST     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
"ZHX3 WILD-TYPE" "ZHX3 WILD-TYPE" "ZHX3 WILD-TYPE" "ZHX3 WILD-TYPE" 
    TCGA-PZ-A5RE     TCGA-Q3-A5QY     TCGA-US-A779     TCGA-US-A77E 
"ZHX3 WILD-TYPE" "ZHX3 WILD-TYPE" "ZHX3 WILD-TYPE" "ZHX3 WILD-TYPE" 
    TCGA-US-A77J 
"ZHX3 WILD-TYPE" 
[1] "hr=" "1.1"
D361V2, continuous
                vv
clus             STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  ZHX3 MUTATED          0        0         2         4         0        0
  ZHX3 WILD-TYPE        1        4         9        47         2        3
D361V3, multiclass
                vv
clus             T1+T2 T3+T4
  ZHX3 MUTATED       0     6
  ZHX3 WILD-TYPE     6    60
D361V4, multiclass
       clus
vv      ZHX3 MUTATED ZHX3 WILD-TYPE
  T1+T2            0              6
  T3+T4            6             60
D361V5, binary
                cls
clus              0  1
  ZHX3 MUTATED    2  4
  ZHX3 WILD-TYPE 15 50
[1] "tbl2"
                cls
clus             [,1] [,2]
  ZHX3 MUTATED      2    4
  ZHX3 WILD-TYPE   15   50
   clus
vv  ZHX3 MUTATED ZHX3 WILD-TYPE
  0            2             15
  1            4             50
                vv
clus             M0 M1 MX
  ZHX3 MUTATED    3  0  3
  ZHX3 WILD-TYPE 36  3 27
D361V6, multiclass
    clus
vv   ZHX3 MUTATED ZHX3 WILD-TYPE
  M0            3             36
  M1            0              3
  MX            3             27
D361V7, binary
                cls
clus              0  1
  ZHX3 MUTATED    3  3
  ZHX3 WILD-TYPE 33 33
[1] "tbl2"
                cls
clus             [,1] [,2]
  ZHX3 MUTATED      3    3
  ZHX3 WILD-TYPE   33   33
        clus
vv       ZHX3 MUTATED ZHX3 WILD-TYPE
  FEMALE            3             33
  MALE              3             33
                vv
clus             PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  ZHX3 MUTATED                                     5
  ZHX3 WILD-TYPE                                  60
                vv
clus             PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  ZHX3 MUTATED                                       1
  ZHX3 WILD-TYPE                                     3
                vv
clus             PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  ZHX3 MUTATED                                                  0
  ZHX3 WILD-TYPE                                                2
D361V8, multiclass
                                                  clus
vv                                                 ZHX3 MUTATED ZHX3 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                         5             60
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                       1              3
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA            0              2
D361V9, continuous
[1] "Remove cluster labels:" "ZHX3 MUTATED"          
clus
  ZHX3 MUTATED ZHX3 WILD-TYPE 
             1             21 
    TCGA-F2-6880     TCGA-FB-A4P5     TCGA-FB-A4P6     TCGA-FB-A5VM 
"ZHX3 WILD-TYPE" "ZHX3 WILD-TYPE" "ZHX3 WILD-TYPE" "ZHX3 WILD-TYPE" 
    TCGA-FB-A78T     TCGA-FB-A7DR     TCGA-H6-8124     TCGA-H6-A45N 
"ZHX3 WILD-TYPE" "ZHX3 WILD-TYPE" "ZHX3 WILD-TYPE" "ZHX3 WILD-TYPE" 
    TCGA-H8-A6C1     TCGA-IB-7644     TCGA-IB-7649     TCGA-IB-7885 
"ZHX3 WILD-TYPE" "ZHX3 WILD-TYPE" "ZHX3 WILD-TYPE" "ZHX3 WILD-TYPE" 
    TCGA-IB-7886     TCGA-IB-7887     TCGA-IB-7891     TCGA-IB-8126 
"ZHX3 WILD-TYPE" "ZHX3 WILD-TYPE" "ZHX3 WILD-TYPE" "ZHX3 WILD-TYPE" 
    TCGA-IB-8127     TCGA-IB-A5SS     TCGA-IB-A6UG     TCGA-LB-A7SX 
"ZHX3 WILD-TYPE" "ZHX3 WILD-TYPE" "ZHX3 WILD-TYPE" "ZHX3 WILD-TYPE" 
    TCGA-OE-A75W 
"ZHX3 WILD-TYPE" 
D361V10, continuous
[1] "Remove cluster labels:" "ZHX3 MUTATED"          
clus
  ZHX3 MUTATED ZHX3 WILD-TYPE 
             1             18 
    TCGA-FB-A4P5     TCGA-FB-A4P6     TCGA-FB-A5VM     TCGA-FB-A78T 
"ZHX3 WILD-TYPE" "ZHX3 WILD-TYPE" "ZHX3 WILD-TYPE" "ZHX3 WILD-TYPE" 
    TCGA-FB-A7DR     TCGA-H6-8124     TCGA-H8-A6C1     TCGA-IB-7644 
"ZHX3 WILD-TYPE" "ZHX3 WILD-TYPE" "ZHX3 WILD-TYPE" "ZHX3 WILD-TYPE" 
    TCGA-IB-7649     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7891 
"ZHX3 WILD-TYPE" "ZHX3 WILD-TYPE" "ZHX3 WILD-TYPE" "ZHX3 WILD-TYPE" 
    TCGA-IB-8126     TCGA-IB-8127     TCGA-IB-A5SS     TCGA-IB-A6UG 
"ZHX3 WILD-TYPE" "ZHX3 WILD-TYPE" "ZHX3 WILD-TYPE" "ZHX3 WILD-TYPE" 
    TCGA-LB-A7SX     TCGA-OE-A75W 
"ZHX3 WILD-TYPE" "ZHX3 WILD-TYPE" 
                vv
clus             R0 R1 RX
  ZHX3 MUTATED    5  1  0
  ZHX3 WILD-TYPE 37 23  2
D361V11, multiclass
    clus
vv   ZHX3 MUTATED ZHX3 WILD-TYPE
  R0            5             37
  R1            1             23
  RX            0              2
D361V12, continuous

Clustering(362) Variable = SLCO2A1 MUTATION ANALYSIS
D362V1, survival
                   sevent
clus2                0  1
  SLCO2A1 MUTATED    3  2
  SLCO2A1 WILD-TYPE 37 27
  SLCO2A1 MUTATED SLCO2A1 WILD-TYPE 
                5                64 
  SLCO2A1 MUTATED SLCO2A1 WILD-TYPE 
                2                27 
$`SLCO2A1 MUTATED`
TCGA-FB-A545 TCGA-H6-8124 TCGA-HZ-A49H TCGA-IB-7649 TCGA-IB-7651 
       12.66        12.89         0.95        15.35        19.82 

$`SLCO2A1 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P5 TCGA-FB-A4P6 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR TCGA-FZ-5920 
        0.13        11.93         2.47         0.03         5.46         2.01 
TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7289 TCGA-HZ-7918 
       36.20        20.81         7.66        13.02         7.89         0.92 
TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 
        0.66         0.13         0.26        12.13        11.87         0.26 
TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 
        0.62         0.79         0.69         3.95         0.92         0.53 
TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 
        0.16         2.99         0.76         6.38         1.51        11.41 
TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7886 
       49.38         4.77        21.90        15.65        27.98         4.04 
TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-7893 
        3.62        43.79        15.81        19.66        16.04         3.85 
TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ 
       15.98         0.56        17.16        10.82         9.86         7.20 
TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W TCGA-PZ-A5RE 
       15.12         0.26         1.35         4.18         3.62         8.12 
TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
       13.68        16.80        14.14        18.67 

  SLCO2A1 MUTATED SLCO2A1 WILD-TYPE 
             0.95              0.03 
  SLCO2A1 MUTATED SLCO2A1 WILD-TYPE 
            19.82             49.38 
  SLCO2A1 MUTATED SLCO2A1 WILD-TYPE 
            12.89              7.15 
[1] "0.9 - 19.8 (12.9)" "0.0 - 49.4 (7.2)" 
       TCGA-F2-6879        TCGA-F2-6880        TCGA-F2-7273        TCGA-F2-7276 
"SLCO2A1 WILD-TYPE" "SLCO2A1 WILD-TYPE" "SLCO2A1 WILD-TYPE" "SLCO2A1 WILD-TYPE" 
       TCGA-F2-A44G        TCGA-F2-A44H        TCGA-FB-A4P5        TCGA-FB-A4P6 
"SLCO2A1 WILD-TYPE" "SLCO2A1 WILD-TYPE" "SLCO2A1 WILD-TYPE" "SLCO2A1 WILD-TYPE" 
       TCGA-FB-A545        TCGA-FB-A5VM        TCGA-FB-A78T        TCGA-FB-A7DR 
  "SLCO2A1 MUTATED" "SLCO2A1 WILD-TYPE" "SLCO2A1 WILD-TYPE" "SLCO2A1 WILD-TYPE" 
       TCGA-FZ-5920        TCGA-FZ-5922        TCGA-FZ-5923        TCGA-H6-8124 
"SLCO2A1 WILD-TYPE" "SLCO2A1 WILD-TYPE" "SLCO2A1 WILD-TYPE"   "SLCO2A1 MUTATED" 
       TCGA-H6-A45N        TCGA-H8-A6C1        TCGA-HZ-7289        TCGA-HZ-7918 
"SLCO2A1 WILD-TYPE" "SLCO2A1 WILD-TYPE" "SLCO2A1 WILD-TYPE" "SLCO2A1 WILD-TYPE" 
       TCGA-HZ-7919        TCGA-HZ-7922        TCGA-HZ-7923        TCGA-HZ-7924 
"SLCO2A1 WILD-TYPE" "SLCO2A1 WILD-TYPE" "SLCO2A1 WILD-TYPE" "SLCO2A1 WILD-TYPE" 
       TCGA-HZ-7925        TCGA-HZ-7926        TCGA-HZ-8001        TCGA-HZ-8002 
"SLCO2A1 WILD-TYPE" "SLCO2A1 WILD-TYPE" "SLCO2A1 WILD-TYPE" "SLCO2A1 WILD-TYPE" 
       TCGA-HZ-8003        TCGA-HZ-8005        TCGA-HZ-8315        TCGA-HZ-8317 
"SLCO2A1 WILD-TYPE" "SLCO2A1 WILD-TYPE" "SLCO2A1 WILD-TYPE" "SLCO2A1 WILD-TYPE" 
       TCGA-HZ-8636        TCGA-HZ-8638        TCGA-HZ-A49G        TCGA-HZ-A49H 
"SLCO2A1 WILD-TYPE" "SLCO2A1 WILD-TYPE" "SLCO2A1 WILD-TYPE"   "SLCO2A1 MUTATED" 
       TCGA-HZ-A4BH        TCGA-HZ-A4BK        TCGA-IB-7644        TCGA-IB-7645 
"SLCO2A1 WILD-TYPE" "SLCO2A1 WILD-TYPE" "SLCO2A1 WILD-TYPE" "SLCO2A1 WILD-TYPE" 
       TCGA-IB-7646        TCGA-IB-7647        TCGA-IB-7649        TCGA-IB-7651 
"SLCO2A1 WILD-TYPE" "SLCO2A1 WILD-TYPE"   "SLCO2A1 MUTATED"   "SLCO2A1 MUTATED" 
       TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-7886        TCGA-IB-7887 
"SLCO2A1 WILD-TYPE" "SLCO2A1 WILD-TYPE" "SLCO2A1 WILD-TYPE" "SLCO2A1 WILD-TYPE" 
       TCGA-IB-7888        TCGA-IB-7889        TCGA-IB-7890        TCGA-IB-7891 
"SLCO2A1 WILD-TYPE" "SLCO2A1 WILD-TYPE" "SLCO2A1 WILD-TYPE" "SLCO2A1 WILD-TYPE" 
       TCGA-IB-7893        TCGA-IB-7897        TCGA-IB-8126        TCGA-IB-8127 
"SLCO2A1 WILD-TYPE" "SLCO2A1 WILD-TYPE" "SLCO2A1 WILD-TYPE" "SLCO2A1 WILD-TYPE" 
       TCGA-IB-A5SO        TCGA-IB-A5SP        TCGA-IB-A5SQ        TCGA-IB-A5SS 
"SLCO2A1 WILD-TYPE" "SLCO2A1 WILD-TYPE" "SLCO2A1 WILD-TYPE" "SLCO2A1 WILD-TYPE" 
       TCGA-IB-A5ST        TCGA-IB-A6UG        TCGA-LB-A7SX        TCGA-OE-A75W 
"SLCO2A1 WILD-TYPE" "SLCO2A1 WILD-TYPE" "SLCO2A1 WILD-TYPE" "SLCO2A1 WILD-TYPE" 
       TCGA-PZ-A5RE        TCGA-Q3-A5QY        TCGA-US-A779        TCGA-US-A77E 
"SLCO2A1 WILD-TYPE" "SLCO2A1 WILD-TYPE" "SLCO2A1 WILD-TYPE" "SLCO2A1 WILD-TYPE" 
       TCGA-US-A77J 
"SLCO2A1 WILD-TYPE" 
       TCGA-F2-6879        TCGA-F2-6880        TCGA-F2-7273        TCGA-F2-7276 
"SLCO2A1 WILD-TYPE" "SLCO2A1 WILD-TYPE" "SLCO2A1 WILD-TYPE" "SLCO2A1 WILD-TYPE" 
       TCGA-F2-A44G        TCGA-F2-A44H        TCGA-FB-A4P5        TCGA-FB-A4P6 
"SLCO2A1 WILD-TYPE" "SLCO2A1 WILD-TYPE" "SLCO2A1 WILD-TYPE" "SLCO2A1 WILD-TYPE" 
       TCGA-FB-A545        TCGA-FB-A5VM        TCGA-FB-A78T        TCGA-FB-A7DR 
  "SLCO2A1 MUTATED" "SLCO2A1 WILD-TYPE" "SLCO2A1 WILD-TYPE" "SLCO2A1 WILD-TYPE" 
       TCGA-FZ-5920        TCGA-FZ-5922        TCGA-FZ-5923        TCGA-H6-8124 
"SLCO2A1 WILD-TYPE" "SLCO2A1 WILD-TYPE" "SLCO2A1 WILD-TYPE"   "SLCO2A1 MUTATED" 
       TCGA-H6-A45N        TCGA-H8-A6C1        TCGA-HZ-7289        TCGA-HZ-7918 
"SLCO2A1 WILD-TYPE" "SLCO2A1 WILD-TYPE" "SLCO2A1 WILD-TYPE" "SLCO2A1 WILD-TYPE" 
       TCGA-HZ-7919        TCGA-HZ-7922        TCGA-HZ-7923        TCGA-HZ-7924 
"SLCO2A1 WILD-TYPE" "SLCO2A1 WILD-TYPE" "SLCO2A1 WILD-TYPE" "SLCO2A1 WILD-TYPE" 
       TCGA-HZ-7925        TCGA-HZ-7926        TCGA-HZ-8001        TCGA-HZ-8002 
"SLCO2A1 WILD-TYPE" "SLCO2A1 WILD-TYPE" "SLCO2A1 WILD-TYPE" "SLCO2A1 WILD-TYPE" 
       TCGA-HZ-8003        TCGA-HZ-8005        TCGA-HZ-8315        TCGA-HZ-8317 
"SLCO2A1 WILD-TYPE" "SLCO2A1 WILD-TYPE" "SLCO2A1 WILD-TYPE" "SLCO2A1 WILD-TYPE" 
       TCGA-HZ-8636        TCGA-HZ-8638        TCGA-HZ-A49G        TCGA-HZ-A49H 
"SLCO2A1 WILD-TYPE" "SLCO2A1 WILD-TYPE" "SLCO2A1 WILD-TYPE"   "SLCO2A1 MUTATED" 
       TCGA-HZ-A4BH        TCGA-HZ-A4BK        TCGA-IB-7644        TCGA-IB-7645 
"SLCO2A1 WILD-TYPE" "SLCO2A1 WILD-TYPE" "SLCO2A1 WILD-TYPE" "SLCO2A1 WILD-TYPE" 
       TCGA-IB-7646        TCGA-IB-7647        TCGA-IB-7649        TCGA-IB-7651 
"SLCO2A1 WILD-TYPE" "SLCO2A1 WILD-TYPE"   "SLCO2A1 MUTATED"   "SLCO2A1 MUTATED" 
       TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-7886        TCGA-IB-7887 
"SLCO2A1 WILD-TYPE" "SLCO2A1 WILD-TYPE" "SLCO2A1 WILD-TYPE" "SLCO2A1 WILD-TYPE" 
       TCGA-IB-7888        TCGA-IB-7889        TCGA-IB-7890        TCGA-IB-7891 
"SLCO2A1 WILD-TYPE" "SLCO2A1 WILD-TYPE" "SLCO2A1 WILD-TYPE" "SLCO2A1 WILD-TYPE" 
       TCGA-IB-7893        TCGA-IB-7897        TCGA-IB-8126        TCGA-IB-8127 
"SLCO2A1 WILD-TYPE" "SLCO2A1 WILD-TYPE" "SLCO2A1 WILD-TYPE" "SLCO2A1 WILD-TYPE" 
       TCGA-IB-A5SO        TCGA-IB-A5SP        TCGA-IB-A5SQ        TCGA-IB-A5SS 
"SLCO2A1 WILD-TYPE" "SLCO2A1 WILD-TYPE" "SLCO2A1 WILD-TYPE" "SLCO2A1 WILD-TYPE" 
       TCGA-IB-A5ST        TCGA-IB-A6UG        TCGA-LB-A7SX        TCGA-OE-A75W 
"SLCO2A1 WILD-TYPE" "SLCO2A1 WILD-TYPE" "SLCO2A1 WILD-TYPE" "SLCO2A1 WILD-TYPE" 
       TCGA-PZ-A5RE        TCGA-Q3-A5QY        TCGA-US-A779        TCGA-US-A77E 
"SLCO2A1 WILD-TYPE" "SLCO2A1 WILD-TYPE" "SLCO2A1 WILD-TYPE" "SLCO2A1 WILD-TYPE" 
       TCGA-US-A77J 
"SLCO2A1 WILD-TYPE" 
       TCGA-F2-6879        TCGA-F2-6880        TCGA-F2-7273        TCGA-F2-7276 
"SLCO2A1 WILD-TYPE" "SLCO2A1 WILD-TYPE" "SLCO2A1 WILD-TYPE" "SLCO2A1 WILD-TYPE" 
       TCGA-F2-A44G        TCGA-F2-A44H        TCGA-FB-A4P5        TCGA-FB-A4P6 
"SLCO2A1 WILD-TYPE" "SLCO2A1 WILD-TYPE" "SLCO2A1 WILD-TYPE" "SLCO2A1 WILD-TYPE" 
       TCGA-FB-A545        TCGA-FB-A5VM        TCGA-FB-A78T        TCGA-FB-A7DR 
  "SLCO2A1 MUTATED" "SLCO2A1 WILD-TYPE" "SLCO2A1 WILD-TYPE" "SLCO2A1 WILD-TYPE" 
       TCGA-FZ-5920        TCGA-FZ-5922        TCGA-FZ-5923        TCGA-H6-8124 
"SLCO2A1 WILD-TYPE" "SLCO2A1 WILD-TYPE" "SLCO2A1 WILD-TYPE"   "SLCO2A1 MUTATED" 
       TCGA-H6-A45N        TCGA-H8-A6C1        TCGA-HZ-7289        TCGA-HZ-7918 
"SLCO2A1 WILD-TYPE" "SLCO2A1 WILD-TYPE" "SLCO2A1 WILD-TYPE" "SLCO2A1 WILD-TYPE" 
       TCGA-HZ-7919        TCGA-HZ-7922        TCGA-HZ-7923        TCGA-HZ-7924 
"SLCO2A1 WILD-TYPE" "SLCO2A1 WILD-TYPE" "SLCO2A1 WILD-TYPE" "SLCO2A1 WILD-TYPE" 
       TCGA-HZ-7925        TCGA-HZ-7926        TCGA-HZ-8001        TCGA-HZ-8002 
"SLCO2A1 WILD-TYPE" "SLCO2A1 WILD-TYPE" "SLCO2A1 WILD-TYPE" "SLCO2A1 WILD-TYPE" 
       TCGA-HZ-8003        TCGA-HZ-8005        TCGA-HZ-8315        TCGA-HZ-8317 
"SLCO2A1 WILD-TYPE" "SLCO2A1 WILD-TYPE" "SLCO2A1 WILD-TYPE" "SLCO2A1 WILD-TYPE" 
       TCGA-HZ-8636        TCGA-HZ-8638        TCGA-HZ-A49G        TCGA-HZ-A49H 
"SLCO2A1 WILD-TYPE" "SLCO2A1 WILD-TYPE" "SLCO2A1 WILD-TYPE"   "SLCO2A1 MUTATED" 
       TCGA-HZ-A4BH        TCGA-HZ-A4BK        TCGA-IB-7644        TCGA-IB-7645 
"SLCO2A1 WILD-TYPE" "SLCO2A1 WILD-TYPE" "SLCO2A1 WILD-TYPE" "SLCO2A1 WILD-TYPE" 
       TCGA-IB-7646        TCGA-IB-7647        TCGA-IB-7649        TCGA-IB-7651 
"SLCO2A1 WILD-TYPE" "SLCO2A1 WILD-TYPE"   "SLCO2A1 MUTATED"   "SLCO2A1 MUTATED" 
       TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-7886        TCGA-IB-7887 
"SLCO2A1 WILD-TYPE" "SLCO2A1 WILD-TYPE" "SLCO2A1 WILD-TYPE" "SLCO2A1 WILD-TYPE" 
       TCGA-IB-7888        TCGA-IB-7889        TCGA-IB-7890        TCGA-IB-7891 
"SLCO2A1 WILD-TYPE" "SLCO2A1 WILD-TYPE" "SLCO2A1 WILD-TYPE" "SLCO2A1 WILD-TYPE" 
       TCGA-IB-7893        TCGA-IB-7897        TCGA-IB-8126        TCGA-IB-8127 
"SLCO2A1 WILD-TYPE" "SLCO2A1 WILD-TYPE" "SLCO2A1 WILD-TYPE" "SLCO2A1 WILD-TYPE" 
       TCGA-IB-A5SO        TCGA-IB-A5SP        TCGA-IB-A5SQ        TCGA-IB-A5SS 
"SLCO2A1 WILD-TYPE" "SLCO2A1 WILD-TYPE" "SLCO2A1 WILD-TYPE" "SLCO2A1 WILD-TYPE" 
       TCGA-IB-A5ST        TCGA-IB-A6UG        TCGA-LB-A7SX        TCGA-OE-A75W 
"SLCO2A1 WILD-TYPE" "SLCO2A1 WILD-TYPE" "SLCO2A1 WILD-TYPE" "SLCO2A1 WILD-TYPE" 
       TCGA-PZ-A5RE        TCGA-Q3-A5QY        TCGA-US-A779        TCGA-US-A77E 
"SLCO2A1 WILD-TYPE" "SLCO2A1 WILD-TYPE" "SLCO2A1 WILD-TYPE" "SLCO2A1 WILD-TYPE" 
       TCGA-US-A77J 
"SLCO2A1 WILD-TYPE" 
[1] "hr=" "1.3"
D362V2, continuous
                   vv
clus                STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  SLCO2A1 MUTATED          0        0         0         5         0        0
  SLCO2A1 WILD-TYPE        1        4        11        46         2        3
D362V3, multiclass
                   vv
clus                T1+T2 T3+T4
  SLCO2A1 MUTATED       0     5
  SLCO2A1 WILD-TYPE     6    61
D362V4, multiclass
       clus
vv      SLCO2A1 MUTATED SLCO2A1 WILD-TYPE
  T1+T2               0                 6
  T3+T4               5                61
D362V5, binary
                   cls
clus                 0  1
  SLCO2A1 MUTATED    0  5
  SLCO2A1 WILD-TYPE 17 49
[1] "tbl2"
                   cls
clus                [,1] [,2]
  SLCO2A1 MUTATED      0    5
  SLCO2A1 WILD-TYPE   17   49
   clus
vv  SLCO2A1 MUTATED SLCO2A1 WILD-TYPE
  0               0                17
  1               5                49
                   vv
clus                M0 M1 MX
  SLCO2A1 MUTATED    4  0  1
  SLCO2A1 WILD-TYPE 35  3 29
D362V6, multiclass
    clus
vv   SLCO2A1 MUTATED SLCO2A1 WILD-TYPE
  M0               4                35
  M1               0                 3
  MX               1                29
D362V7, binary
                   cls
clus                 0  1
  SLCO2A1 MUTATED    5  0
  SLCO2A1 WILD-TYPE 31 36
[1] "tbl2"
                   cls
clus                [,1] [,2]
  SLCO2A1 MUTATED      5    0
  SLCO2A1 WILD-TYPE   31   36
        clus
vv       SLCO2A1 MUTATED SLCO2A1 WILD-TYPE
  FEMALE               5                31
  MALE                 0                36
                   vv
clus                PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  SLCO2A1 MUTATED                                     5
  SLCO2A1 WILD-TYPE                                  60
                   vv
clus                PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  SLCO2A1 MUTATED                                       0
  SLCO2A1 WILD-TYPE                                     4
                   vv
clus                PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  SLCO2A1 MUTATED                                                  0
  SLCO2A1 WILD-TYPE                                                2
D362V8, multiclass
                                                  clus
vv                                                 SLCO2A1 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                            5
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                          0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA               0
                                                  clus
vv                                                 SLCO2A1 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                             60
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                            4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                 2
D362V9, continuous
D362V10, continuous
                   vv
clus                R0 R1 RX
  SLCO2A1 MUTATED    3  1  0
  SLCO2A1 WILD-TYPE 39 23  2
D362V11, multiclass
    clus
vv   SLCO2A1 MUTATED SLCO2A1 WILD-TYPE
  R0               3                39
  R1               1                23
  RX               0                 2
D362V12, continuous

Clustering(363) Variable = PHRF1 MUTATION ANALYSIS
D363V1, survival
                 sevent
clus2              0  1
  PHRF1 MUTATED    5  2
  PHRF1 WILD-TYPE 35 27
  PHRF1 MUTATED PHRF1 WILD-TYPE 
              7              62 
  PHRF1 MUTATED PHRF1 WILD-TYPE 
              2              27 
$`PHRF1 MUTATED`
TCGA-F2-6880 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 TCGA-IB-7651 TCGA-IB-7891 
        9.70         0.79         0.69         3.95        19.82        16.04 
TCGA-IB-8127 
       17.16 

$`PHRF1 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H TCGA-FB-A4P5 
       10.98        11.84         7.10         5.03        19.27         0.13 
TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR TCGA-FZ-5920 
       11.93        12.66         2.47         0.03         5.46         2.01 
TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7289 
       36.20        20.81        12.89         7.66        13.02         7.89 
TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 
        0.92         0.66         0.13         0.26        12.13        11.87 
TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8636 TCGA-HZ-8638 
        0.26         0.62         0.92         0.53         0.16         2.99 
TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7645 
        0.76         0.95         6.38         1.51        11.41        49.38 
TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7886 
        4.77        21.90        15.35        15.65        27.98         4.04 
TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7893 TCGA-IB-7897 
        3.62        43.79        15.81        19.66         3.85        15.98 
TCGA-IB-8126 TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST 
        0.56        10.82         9.86         7.20        15.12         0.26 
TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 
        1.35         4.18         3.62         8.12        13.68        16.80 
TCGA-US-A77E TCGA-US-A77J 
       14.14        18.67 

  PHRF1 MUTATED PHRF1 WILD-TYPE 
           0.69            0.03 
  PHRF1 MUTATED PHRF1 WILD-TYPE 
          19.82           49.38 
  PHRF1 MUTATED PHRF1 WILD-TYPE 
           9.70            7.43 
[1] "0.7 - 19.8 (9.7)" "0.0 - 49.4 (7.4)"
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"PHRF1 WILD-TYPE"   "PHRF1 MUTATED" "PHRF1 WILD-TYPE" "PHRF1 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"PHRF1 WILD-TYPE" "PHRF1 WILD-TYPE" "PHRF1 WILD-TYPE" "PHRF1 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"PHRF1 WILD-TYPE" "PHRF1 WILD-TYPE" "PHRF1 WILD-TYPE" "PHRF1 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"PHRF1 WILD-TYPE" "PHRF1 WILD-TYPE" "PHRF1 WILD-TYPE" "PHRF1 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"PHRF1 WILD-TYPE" "PHRF1 WILD-TYPE" "PHRF1 WILD-TYPE" "PHRF1 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"PHRF1 WILD-TYPE" "PHRF1 WILD-TYPE" "PHRF1 WILD-TYPE" "PHRF1 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"PHRF1 WILD-TYPE" "PHRF1 WILD-TYPE" "PHRF1 WILD-TYPE"   "PHRF1 MUTATED" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
  "PHRF1 MUTATED"   "PHRF1 MUTATED" "PHRF1 WILD-TYPE" "PHRF1 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"PHRF1 WILD-TYPE" "PHRF1 WILD-TYPE" "PHRF1 WILD-TYPE" "PHRF1 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"PHRF1 WILD-TYPE" "PHRF1 WILD-TYPE" "PHRF1 WILD-TYPE" "PHRF1 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"PHRF1 WILD-TYPE" "PHRF1 WILD-TYPE" "PHRF1 WILD-TYPE"   "PHRF1 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"PHRF1 WILD-TYPE" "PHRF1 WILD-TYPE" "PHRF1 WILD-TYPE" "PHRF1 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"PHRF1 WILD-TYPE" "PHRF1 WILD-TYPE" "PHRF1 WILD-TYPE"   "PHRF1 MUTATED" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"PHRF1 WILD-TYPE" "PHRF1 WILD-TYPE" "PHRF1 WILD-TYPE"   "PHRF1 MUTATED" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"PHRF1 WILD-TYPE" "PHRF1 WILD-TYPE" "PHRF1 WILD-TYPE" "PHRF1 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"PHRF1 WILD-TYPE" "PHRF1 WILD-TYPE" "PHRF1 WILD-TYPE" "PHRF1 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"PHRF1 WILD-TYPE" "PHRF1 WILD-TYPE" "PHRF1 WILD-TYPE" "PHRF1 WILD-TYPE" 
     TCGA-US-A77J 
"PHRF1 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"PHRF1 WILD-TYPE"   "PHRF1 MUTATED" "PHRF1 WILD-TYPE" "PHRF1 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"PHRF1 WILD-TYPE" "PHRF1 WILD-TYPE" "PHRF1 WILD-TYPE" "PHRF1 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"PHRF1 WILD-TYPE" "PHRF1 WILD-TYPE" "PHRF1 WILD-TYPE" "PHRF1 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"PHRF1 WILD-TYPE" "PHRF1 WILD-TYPE" "PHRF1 WILD-TYPE" "PHRF1 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"PHRF1 WILD-TYPE" "PHRF1 WILD-TYPE" "PHRF1 WILD-TYPE" "PHRF1 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"PHRF1 WILD-TYPE" "PHRF1 WILD-TYPE" "PHRF1 WILD-TYPE" "PHRF1 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"PHRF1 WILD-TYPE" "PHRF1 WILD-TYPE" "PHRF1 WILD-TYPE"   "PHRF1 MUTATED" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
  "PHRF1 MUTATED"   "PHRF1 MUTATED" "PHRF1 WILD-TYPE" "PHRF1 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"PHRF1 WILD-TYPE" "PHRF1 WILD-TYPE" "PHRF1 WILD-TYPE" "PHRF1 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"PHRF1 WILD-TYPE" "PHRF1 WILD-TYPE" "PHRF1 WILD-TYPE" "PHRF1 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"PHRF1 WILD-TYPE" "PHRF1 WILD-TYPE" "PHRF1 WILD-TYPE"   "PHRF1 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"PHRF1 WILD-TYPE" "PHRF1 WILD-TYPE" "PHRF1 WILD-TYPE" "PHRF1 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"PHRF1 WILD-TYPE" "PHRF1 WILD-TYPE" "PHRF1 WILD-TYPE"   "PHRF1 MUTATED" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"PHRF1 WILD-TYPE" "PHRF1 WILD-TYPE" "PHRF1 WILD-TYPE"   "PHRF1 MUTATED" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"PHRF1 WILD-TYPE" "PHRF1 WILD-TYPE" "PHRF1 WILD-TYPE" "PHRF1 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"PHRF1 WILD-TYPE" "PHRF1 WILD-TYPE" "PHRF1 WILD-TYPE" "PHRF1 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"PHRF1 WILD-TYPE" "PHRF1 WILD-TYPE" "PHRF1 WILD-TYPE" "PHRF1 WILD-TYPE" 
     TCGA-US-A77J 
"PHRF1 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"PHRF1 WILD-TYPE"   "PHRF1 MUTATED" "PHRF1 WILD-TYPE" "PHRF1 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"PHRF1 WILD-TYPE" "PHRF1 WILD-TYPE" "PHRF1 WILD-TYPE" "PHRF1 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"PHRF1 WILD-TYPE" "PHRF1 WILD-TYPE" "PHRF1 WILD-TYPE" "PHRF1 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"PHRF1 WILD-TYPE" "PHRF1 WILD-TYPE" "PHRF1 WILD-TYPE" "PHRF1 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"PHRF1 WILD-TYPE" "PHRF1 WILD-TYPE" "PHRF1 WILD-TYPE" "PHRF1 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"PHRF1 WILD-TYPE" "PHRF1 WILD-TYPE" "PHRF1 WILD-TYPE" "PHRF1 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"PHRF1 WILD-TYPE" "PHRF1 WILD-TYPE" "PHRF1 WILD-TYPE"   "PHRF1 MUTATED" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
  "PHRF1 MUTATED"   "PHRF1 MUTATED" "PHRF1 WILD-TYPE" "PHRF1 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"PHRF1 WILD-TYPE" "PHRF1 WILD-TYPE" "PHRF1 WILD-TYPE" "PHRF1 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"PHRF1 WILD-TYPE" "PHRF1 WILD-TYPE" "PHRF1 WILD-TYPE" "PHRF1 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"PHRF1 WILD-TYPE" "PHRF1 WILD-TYPE" "PHRF1 WILD-TYPE"   "PHRF1 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"PHRF1 WILD-TYPE" "PHRF1 WILD-TYPE" "PHRF1 WILD-TYPE" "PHRF1 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"PHRF1 WILD-TYPE" "PHRF1 WILD-TYPE" "PHRF1 WILD-TYPE"   "PHRF1 MUTATED" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"PHRF1 WILD-TYPE" "PHRF1 WILD-TYPE" "PHRF1 WILD-TYPE"   "PHRF1 MUTATED" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"PHRF1 WILD-TYPE" "PHRF1 WILD-TYPE" "PHRF1 WILD-TYPE" "PHRF1 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"PHRF1 WILD-TYPE" "PHRF1 WILD-TYPE" "PHRF1 WILD-TYPE" "PHRF1 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"PHRF1 WILD-TYPE" "PHRF1 WILD-TYPE" "PHRF1 WILD-TYPE" "PHRF1 WILD-TYPE" 
     TCGA-US-A77J 
"PHRF1 WILD-TYPE" 
[1] "hr=" "1.6"
D363V2, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  PHRF1 MUTATED          0        0         0         7         0        0
  PHRF1 WILD-TYPE        1        4        11        44         2        3
D363V3, multiclass
                 vv
clus              T1+T2 T3+T4
  PHRF1 MUTATED       0     7
  PHRF1 WILD-TYPE     6    59
D363V4, multiclass
       clus
vv      PHRF1 MUTATED PHRF1 WILD-TYPE
  T1+T2             0               6
  T3+T4             7              59
D363V5, binary
                 cls
clus               0  1
  PHRF1 MUTATED    0  7
  PHRF1 WILD-TYPE 17 47
[1] "tbl2"
                 cls
clus              [,1] [,2]
  PHRF1 MUTATED      0    7
  PHRF1 WILD-TYPE   17   47
   clus
vv  PHRF1 MUTATED PHRF1 WILD-TYPE
  0             0              17
  1             7              47
                 vv
clus              M0 M1 MX
  PHRF1 MUTATED    4  0  3
  PHRF1 WILD-TYPE 35  3 27
D363V6, multiclass
    clus
vv   PHRF1 MUTATED PHRF1 WILD-TYPE
  M0             4              35
  M1             0               3
  MX             3              27
D363V7, binary
                 cls
clus               0  1
  PHRF1 MUTATED    2  5
  PHRF1 WILD-TYPE 34 31
[1] "tbl2"
                 cls
clus              [,1] [,2]
  PHRF1 MUTATED      2    5
  PHRF1 WILD-TYPE   34   31
        clus
vv       PHRF1 MUTATED PHRF1 WILD-TYPE
  FEMALE             2              34
  MALE               5              31
                 vv
clus              PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  PHRF1 MUTATED                                     7
  PHRF1 WILD-TYPE                                  58
                 vv
clus              PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  PHRF1 MUTATED                                       0
  PHRF1 WILD-TYPE                                     4
                 vv
clus              PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  PHRF1 MUTATED                                                  0
  PHRF1 WILD-TYPE                                                2
D363V8, multiclass
                                                  clus
vv                                                 PHRF1 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                          7
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                        0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA             0
                                                  clus
vv                                                 PHRF1 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                           58
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                          4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA               2
D363V9, continuous
D363V10, continuous
                 vv
clus              R0 R1 RX
  PHRF1 MUTATED    5  2  0
  PHRF1 WILD-TYPE 37 22  2
D363V11, multiclass
    clus
vv   PHRF1 MUTATED PHRF1 WILD-TYPE
  R0             5              37
  R1             2              22
  RX             0               2
D363V12, continuous

Clustering(364) Variable = PUS7 MUTATION ANALYSIS
D364V1, survival
                sevent
clus2             0  1
  PUS7 MUTATED    3  1
  PUS7 WILD-TYPE 37 28
  PUS7 MUTATED PUS7 WILD-TYPE 
             4             65 
  PUS7 MUTATED PUS7 WILD-TYPE 
             1             28 
$`PUS7 MUTATED`
TCGA-FB-A4P6 TCGA-HZ-7289 TCGA-IB-7645 TCGA-IB-A5SO 
       11.93         7.89        49.38        10.82 

$`PUS7 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P5 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR TCGA-FZ-5920 
        0.13        12.66         2.47         0.03         5.46         2.01 
TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7918 
       36.20        20.81        12.89         7.66        13.02         0.92 
TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 
        0.66         0.13         0.26        12.13        11.87         0.26 
TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 
        0.62         0.79         0.69         3.95         0.92         0.53 
TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK 
        0.16         2.99         0.76         0.95         6.38         1.51 
TCGA-IB-7644 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7651 TCGA-IB-7652 
       11.41         4.77        21.90        15.35        19.82        15.65 
TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 
       27.98         4.04         3.62        43.79        15.81        19.66 
TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SP 
       16.04         3.85        15.98         0.56        17.16         9.86 
TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W 
        7.20        15.12         0.26         1.35         4.18         3.62 
TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
        8.12        13.68        16.80        14.14        18.67 

  PUS7 MUTATED PUS7 WILD-TYPE 
          7.89           0.03 
  PUS7 MUTATED PUS7 WILD-TYPE 
         49.38          43.79 
  PUS7 MUTATED PUS7 WILD-TYPE 
        11.375          7.100 
[1] "7.9 - 49.4 (11.4)" "0.0 - 43.8 (7.1)" 
    TCGA-F2-6879     TCGA-F2-6880     TCGA-F2-7273     TCGA-F2-7276 
"PUS7 WILD-TYPE" "PUS7 WILD-TYPE" "PUS7 WILD-TYPE" "PUS7 WILD-TYPE" 
    TCGA-F2-A44G     TCGA-F2-A44H     TCGA-FB-A4P5     TCGA-FB-A4P6 
"PUS7 WILD-TYPE" "PUS7 WILD-TYPE" "PUS7 WILD-TYPE"   "PUS7 MUTATED" 
    TCGA-FB-A545     TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-FB-A7DR 
"PUS7 WILD-TYPE" "PUS7 WILD-TYPE" "PUS7 WILD-TYPE" "PUS7 WILD-TYPE" 
    TCGA-FZ-5920     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-H6-8124 
"PUS7 WILD-TYPE" "PUS7 WILD-TYPE" "PUS7 WILD-TYPE" "PUS7 WILD-TYPE" 
    TCGA-H6-A45N     TCGA-H8-A6C1     TCGA-HZ-7289     TCGA-HZ-7918 
"PUS7 WILD-TYPE" "PUS7 WILD-TYPE"   "PUS7 MUTATED" "PUS7 WILD-TYPE" 
    TCGA-HZ-7919     TCGA-HZ-7922     TCGA-HZ-7923     TCGA-HZ-7924 
"PUS7 WILD-TYPE" "PUS7 WILD-TYPE" "PUS7 WILD-TYPE" "PUS7 WILD-TYPE" 
    TCGA-HZ-7925     TCGA-HZ-7926     TCGA-HZ-8001     TCGA-HZ-8002 
"PUS7 WILD-TYPE" "PUS7 WILD-TYPE" "PUS7 WILD-TYPE" "PUS7 WILD-TYPE" 
    TCGA-HZ-8003     TCGA-HZ-8005     TCGA-HZ-8315     TCGA-HZ-8317 
"PUS7 WILD-TYPE" "PUS7 WILD-TYPE" "PUS7 WILD-TYPE" "PUS7 WILD-TYPE" 
    TCGA-HZ-8636     TCGA-HZ-8638     TCGA-HZ-A49G     TCGA-HZ-A49H 
"PUS7 WILD-TYPE" "PUS7 WILD-TYPE" "PUS7 WILD-TYPE" "PUS7 WILD-TYPE" 
    TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-IB-7644     TCGA-IB-7645 
"PUS7 WILD-TYPE" "PUS7 WILD-TYPE" "PUS7 WILD-TYPE"   "PUS7 MUTATED" 
    TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7651 
"PUS7 WILD-TYPE" "PUS7 WILD-TYPE" "PUS7 WILD-TYPE" "PUS7 WILD-TYPE" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887 
"PUS7 WILD-TYPE" "PUS7 WILD-TYPE" "PUS7 WILD-TYPE" "PUS7 WILD-TYPE" 
    TCGA-IB-7888     TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891 
"PUS7 WILD-TYPE" "PUS7 WILD-TYPE" "PUS7 WILD-TYPE" "PUS7 WILD-TYPE" 
    TCGA-IB-7893     TCGA-IB-7897     TCGA-IB-8126     TCGA-IB-8127 
"PUS7 WILD-TYPE" "PUS7 WILD-TYPE" "PUS7 WILD-TYPE" "PUS7 WILD-TYPE" 
    TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS 
  "PUS7 MUTATED" "PUS7 WILD-TYPE" "PUS7 WILD-TYPE" "PUS7 WILD-TYPE" 
    TCGA-IB-A5ST     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
"PUS7 WILD-TYPE" "PUS7 WILD-TYPE" "PUS7 WILD-TYPE" "PUS7 WILD-TYPE" 
    TCGA-PZ-A5RE     TCGA-Q3-A5QY     TCGA-US-A779     TCGA-US-A77E 
"PUS7 WILD-TYPE" "PUS7 WILD-TYPE" "PUS7 WILD-TYPE" "PUS7 WILD-TYPE" 
    TCGA-US-A77J 
"PUS7 WILD-TYPE" 
    TCGA-F2-6879     TCGA-F2-6880     TCGA-F2-7273     TCGA-F2-7276 
"PUS7 WILD-TYPE" "PUS7 WILD-TYPE" "PUS7 WILD-TYPE" "PUS7 WILD-TYPE" 
    TCGA-F2-A44G     TCGA-F2-A44H     TCGA-FB-A4P5     TCGA-FB-A4P6 
"PUS7 WILD-TYPE" "PUS7 WILD-TYPE" "PUS7 WILD-TYPE"   "PUS7 MUTATED" 
    TCGA-FB-A545     TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-FB-A7DR 
"PUS7 WILD-TYPE" "PUS7 WILD-TYPE" "PUS7 WILD-TYPE" "PUS7 WILD-TYPE" 
    TCGA-FZ-5920     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-H6-8124 
"PUS7 WILD-TYPE" "PUS7 WILD-TYPE" "PUS7 WILD-TYPE" "PUS7 WILD-TYPE" 
    TCGA-H6-A45N     TCGA-H8-A6C1     TCGA-HZ-7289     TCGA-HZ-7918 
"PUS7 WILD-TYPE" "PUS7 WILD-TYPE"   "PUS7 MUTATED" "PUS7 WILD-TYPE" 
    TCGA-HZ-7919     TCGA-HZ-7922     TCGA-HZ-7923     TCGA-HZ-7924 
"PUS7 WILD-TYPE" "PUS7 WILD-TYPE" "PUS7 WILD-TYPE" "PUS7 WILD-TYPE" 
    TCGA-HZ-7925     TCGA-HZ-7926     TCGA-HZ-8001     TCGA-HZ-8002 
"PUS7 WILD-TYPE" "PUS7 WILD-TYPE" "PUS7 WILD-TYPE" "PUS7 WILD-TYPE" 
    TCGA-HZ-8003     TCGA-HZ-8005     TCGA-HZ-8315     TCGA-HZ-8317 
"PUS7 WILD-TYPE" "PUS7 WILD-TYPE" "PUS7 WILD-TYPE" "PUS7 WILD-TYPE" 
    TCGA-HZ-8636     TCGA-HZ-8638     TCGA-HZ-A49G     TCGA-HZ-A49H 
"PUS7 WILD-TYPE" "PUS7 WILD-TYPE" "PUS7 WILD-TYPE" "PUS7 WILD-TYPE" 
    TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-IB-7644     TCGA-IB-7645 
"PUS7 WILD-TYPE" "PUS7 WILD-TYPE" "PUS7 WILD-TYPE"   "PUS7 MUTATED" 
    TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7651 
"PUS7 WILD-TYPE" "PUS7 WILD-TYPE" "PUS7 WILD-TYPE" "PUS7 WILD-TYPE" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887 
"PUS7 WILD-TYPE" "PUS7 WILD-TYPE" "PUS7 WILD-TYPE" "PUS7 WILD-TYPE" 
    TCGA-IB-7888     TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891 
"PUS7 WILD-TYPE" "PUS7 WILD-TYPE" "PUS7 WILD-TYPE" "PUS7 WILD-TYPE" 
    TCGA-IB-7893     TCGA-IB-7897     TCGA-IB-8126     TCGA-IB-8127 
"PUS7 WILD-TYPE" "PUS7 WILD-TYPE" "PUS7 WILD-TYPE" "PUS7 WILD-TYPE" 
    TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS 
  "PUS7 MUTATED" "PUS7 WILD-TYPE" "PUS7 WILD-TYPE" "PUS7 WILD-TYPE" 
    TCGA-IB-A5ST     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
"PUS7 WILD-TYPE" "PUS7 WILD-TYPE" "PUS7 WILD-TYPE" "PUS7 WILD-TYPE" 
    TCGA-PZ-A5RE     TCGA-Q3-A5QY     TCGA-US-A779     TCGA-US-A77E 
"PUS7 WILD-TYPE" "PUS7 WILD-TYPE" "PUS7 WILD-TYPE" "PUS7 WILD-TYPE" 
    TCGA-US-A77J 
"PUS7 WILD-TYPE" 
    TCGA-F2-6879     TCGA-F2-6880     TCGA-F2-7273     TCGA-F2-7276 
"PUS7 WILD-TYPE" "PUS7 WILD-TYPE" "PUS7 WILD-TYPE" "PUS7 WILD-TYPE" 
    TCGA-F2-A44G     TCGA-F2-A44H     TCGA-FB-A4P5     TCGA-FB-A4P6 
"PUS7 WILD-TYPE" "PUS7 WILD-TYPE" "PUS7 WILD-TYPE"   "PUS7 MUTATED" 
    TCGA-FB-A545     TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-FB-A7DR 
"PUS7 WILD-TYPE" "PUS7 WILD-TYPE" "PUS7 WILD-TYPE" "PUS7 WILD-TYPE" 
    TCGA-FZ-5920     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-H6-8124 
"PUS7 WILD-TYPE" "PUS7 WILD-TYPE" "PUS7 WILD-TYPE" "PUS7 WILD-TYPE" 
    TCGA-H6-A45N     TCGA-H8-A6C1     TCGA-HZ-7289     TCGA-HZ-7918 
"PUS7 WILD-TYPE" "PUS7 WILD-TYPE"   "PUS7 MUTATED" "PUS7 WILD-TYPE" 
    TCGA-HZ-7919     TCGA-HZ-7922     TCGA-HZ-7923     TCGA-HZ-7924 
"PUS7 WILD-TYPE" "PUS7 WILD-TYPE" "PUS7 WILD-TYPE" "PUS7 WILD-TYPE" 
    TCGA-HZ-7925     TCGA-HZ-7926     TCGA-HZ-8001     TCGA-HZ-8002 
"PUS7 WILD-TYPE" "PUS7 WILD-TYPE" "PUS7 WILD-TYPE" "PUS7 WILD-TYPE" 
    TCGA-HZ-8003     TCGA-HZ-8005     TCGA-HZ-8315     TCGA-HZ-8317 
"PUS7 WILD-TYPE" "PUS7 WILD-TYPE" "PUS7 WILD-TYPE" "PUS7 WILD-TYPE" 
    TCGA-HZ-8636     TCGA-HZ-8638     TCGA-HZ-A49G     TCGA-HZ-A49H 
"PUS7 WILD-TYPE" "PUS7 WILD-TYPE" "PUS7 WILD-TYPE" "PUS7 WILD-TYPE" 
    TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-IB-7644     TCGA-IB-7645 
"PUS7 WILD-TYPE" "PUS7 WILD-TYPE" "PUS7 WILD-TYPE"   "PUS7 MUTATED" 
    TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7651 
"PUS7 WILD-TYPE" "PUS7 WILD-TYPE" "PUS7 WILD-TYPE" "PUS7 WILD-TYPE" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887 
"PUS7 WILD-TYPE" "PUS7 WILD-TYPE" "PUS7 WILD-TYPE" "PUS7 WILD-TYPE" 
    TCGA-IB-7888     TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891 
"PUS7 WILD-TYPE" "PUS7 WILD-TYPE" "PUS7 WILD-TYPE" "PUS7 WILD-TYPE" 
    TCGA-IB-7893     TCGA-IB-7897     TCGA-IB-8126     TCGA-IB-8127 
"PUS7 WILD-TYPE" "PUS7 WILD-TYPE" "PUS7 WILD-TYPE" "PUS7 WILD-TYPE" 
    TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS 
  "PUS7 MUTATED" "PUS7 WILD-TYPE" "PUS7 WILD-TYPE" "PUS7 WILD-TYPE" 
    TCGA-IB-A5ST     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
"PUS7 WILD-TYPE" "PUS7 WILD-TYPE" "PUS7 WILD-TYPE" "PUS7 WILD-TYPE" 
    TCGA-PZ-A5RE     TCGA-Q3-A5QY     TCGA-US-A779     TCGA-US-A77E 
"PUS7 WILD-TYPE" "PUS7 WILD-TYPE" "PUS7 WILD-TYPE" "PUS7 WILD-TYPE" 
    TCGA-US-A77J 
"PUS7 WILD-TYPE" 
[1] "hr="     "9.6e+07"
D364V2, continuous
                vv
clus             STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  PUS7 MUTATED          0        0         0         4         0        0
  PUS7 WILD-TYPE        1        4        11        47         2        3
D364V3, multiclass
                vv
clus             T1+T2 T3+T4
  PUS7 MUTATED       0     4
  PUS7 WILD-TYPE     6    62
D364V4, multiclass
       clus
vv      PUS7 MUTATED PUS7 WILD-TYPE
  T1+T2            0              6
  T3+T4            4             62
D364V5, binary
                cls
clus              0  1
  PUS7 MUTATED    0  4
  PUS7 WILD-TYPE 17 50
[1] "tbl2"
                cls
clus             [,1] [,2]
  PUS7 MUTATED      0    4
  PUS7 WILD-TYPE   17   50
   clus
vv  PUS7 MUTATED PUS7 WILD-TYPE
  0            0             17
  1            4             50
                vv
clus             M0 M1 MX
  PUS7 MUTATED    2  0  2
  PUS7 WILD-TYPE 37  3 28
D364V6, multiclass
    clus
vv   PUS7 MUTATED PUS7 WILD-TYPE
  M0            2             37
  M1            0              3
  MX            2             28
D364V7, binary
                cls
clus              0  1
  PUS7 MUTATED    1  3
  PUS7 WILD-TYPE 35 33
[1] "tbl2"
                cls
clus             [,1] [,2]
  PUS7 MUTATED      1    3
  PUS7 WILD-TYPE   35   33
        clus
vv       PUS7 MUTATED PUS7 WILD-TYPE
  FEMALE            1             35
  MALE              3             33
                vv
clus             PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  PUS7 MUTATED                                     3
  PUS7 WILD-TYPE                                  62
                vv
clus             PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  PUS7 MUTATED                                       1
  PUS7 WILD-TYPE                                     3
                vv
clus             PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  PUS7 MUTATED                                                  0
  PUS7 WILD-TYPE                                                2
D364V8, multiclass
                                                  clus
vv                                                 PUS7 MUTATED PUS7 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                         3             62
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                       1              3
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA            0              2
D364V9, continuous
[1] "Remove cluster labels:" "PUS7 MUTATED"          
clus
  PUS7 MUTATED PUS7 WILD-TYPE 
             1             21 
    TCGA-F2-6880     TCGA-FB-A4P5     TCGA-FB-A5VM     TCGA-FB-A78T 
"PUS7 WILD-TYPE" "PUS7 WILD-TYPE" "PUS7 WILD-TYPE" "PUS7 WILD-TYPE" 
    TCGA-FB-A7DR     TCGA-H6-8124     TCGA-H6-A45N     TCGA-H8-A6C1 
"PUS7 WILD-TYPE" "PUS7 WILD-TYPE" "PUS7 WILD-TYPE" "PUS7 WILD-TYPE" 
    TCGA-IB-7644     TCGA-IB-7649     TCGA-IB-7651     TCGA-IB-7885 
"PUS7 WILD-TYPE" "PUS7 WILD-TYPE" "PUS7 WILD-TYPE" "PUS7 WILD-TYPE" 
    TCGA-IB-7886     TCGA-IB-7887     TCGA-IB-7891     TCGA-IB-8126 
"PUS7 WILD-TYPE" "PUS7 WILD-TYPE" "PUS7 WILD-TYPE" "PUS7 WILD-TYPE" 
    TCGA-IB-8127     TCGA-IB-A5SS     TCGA-IB-A6UG     TCGA-LB-A7SX 
"PUS7 WILD-TYPE" "PUS7 WILD-TYPE" "PUS7 WILD-TYPE" "PUS7 WILD-TYPE" 
    TCGA-OE-A75W 
"PUS7 WILD-TYPE" 
D364V10, continuous
[1] "Remove cluster labels:" "PUS7 MUTATED"          
clus
  PUS7 MUTATED PUS7 WILD-TYPE 
             1             18 
    TCGA-FB-A4P5     TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-FB-A7DR 
"PUS7 WILD-TYPE" "PUS7 WILD-TYPE" "PUS7 WILD-TYPE" "PUS7 WILD-TYPE" 
    TCGA-H6-8124     TCGA-H8-A6C1     TCGA-IB-7644     TCGA-IB-7649 
"PUS7 WILD-TYPE" "PUS7 WILD-TYPE" "PUS7 WILD-TYPE" "PUS7 WILD-TYPE" 
    TCGA-IB-7651     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7891 
"PUS7 WILD-TYPE" "PUS7 WILD-TYPE" "PUS7 WILD-TYPE" "PUS7 WILD-TYPE" 
    TCGA-IB-8126     TCGA-IB-8127     TCGA-IB-A5SS     TCGA-IB-A6UG 
"PUS7 WILD-TYPE" "PUS7 WILD-TYPE" "PUS7 WILD-TYPE" "PUS7 WILD-TYPE" 
    TCGA-LB-A7SX     TCGA-OE-A75W 
"PUS7 WILD-TYPE" "PUS7 WILD-TYPE" 
                vv
clus             R0 R1 RX
  PUS7 MUTATED    2  0  1
  PUS7 WILD-TYPE 40 24  1
D364V11, multiclass
    clus
vv   PUS7 MUTATED PUS7 WILD-TYPE
  R0            2             40
  R1            0             24
  RX            1              1
D364V12, continuous

Clustering(365) Variable = FLAD1 MUTATION ANALYSIS
D365V1, survival
                 sevent
clus2              0  1
  FLAD1 MUTATED    2  2
  FLAD1 WILD-TYPE 38 27
  FLAD1 MUTATED FLAD1 WILD-TYPE 
              4              65 
  FLAD1 MUTATED FLAD1 WILD-TYPE 
              2              27 
$`FLAD1 MUTATED`
TCGA-HZ-8002 TCGA-HZ-8003 TCGA-IB-7651 TCGA-IB-7887 
        0.79         0.69        19.82         3.62 

$`FLAD1 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P5 TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR 
        0.13        11.93        12.66         2.47         0.03         5.46 
TCGA-FZ-5920 TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 
        2.01        36.20        20.81        12.89         7.66        13.02 
TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 
        7.89         0.92         0.66         0.13         0.26        12.13 
TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 
       11.87         0.26         0.62         3.95         0.92         0.53 
TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK 
        0.16         2.99         0.76         0.95         6.38         1.51 
TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7652 
       11.41        49.38         4.77        21.90        15.35        15.65 
TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 
       27.98         4.04        43.79        15.81        19.66        16.04 
TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP 
        3.85        15.98         0.56        17.16        10.82         9.86 
TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W 
        7.20        15.12         0.26         1.35         4.18         3.62 
TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
        8.12        13.68        16.80        14.14        18.67 

  FLAD1 MUTATED FLAD1 WILD-TYPE 
           0.69            0.03 
  FLAD1 MUTATED FLAD1 WILD-TYPE 
          19.82           49.38 
  FLAD1 MUTATED FLAD1 WILD-TYPE 
          2.205           7.890 
[1] "0.7 - 19.8 (2.2)" "0.0 - 49.4 (7.9)"
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"FLAD1 WILD-TYPE" "FLAD1 WILD-TYPE" "FLAD1 WILD-TYPE" "FLAD1 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"FLAD1 WILD-TYPE" "FLAD1 WILD-TYPE" "FLAD1 WILD-TYPE" "FLAD1 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"FLAD1 WILD-TYPE" "FLAD1 WILD-TYPE" "FLAD1 WILD-TYPE" "FLAD1 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"FLAD1 WILD-TYPE" "FLAD1 WILD-TYPE" "FLAD1 WILD-TYPE" "FLAD1 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"FLAD1 WILD-TYPE" "FLAD1 WILD-TYPE" "FLAD1 WILD-TYPE" "FLAD1 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"FLAD1 WILD-TYPE" "FLAD1 WILD-TYPE" "FLAD1 WILD-TYPE" "FLAD1 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"FLAD1 WILD-TYPE" "FLAD1 WILD-TYPE" "FLAD1 WILD-TYPE"   "FLAD1 MUTATED" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
  "FLAD1 MUTATED" "FLAD1 WILD-TYPE" "FLAD1 WILD-TYPE" "FLAD1 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"FLAD1 WILD-TYPE" "FLAD1 WILD-TYPE" "FLAD1 WILD-TYPE" "FLAD1 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"FLAD1 WILD-TYPE" "FLAD1 WILD-TYPE" "FLAD1 WILD-TYPE" "FLAD1 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"FLAD1 WILD-TYPE" "FLAD1 WILD-TYPE" "FLAD1 WILD-TYPE"   "FLAD1 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"FLAD1 WILD-TYPE" "FLAD1 WILD-TYPE" "FLAD1 WILD-TYPE"   "FLAD1 MUTATED" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"FLAD1 WILD-TYPE" "FLAD1 WILD-TYPE" "FLAD1 WILD-TYPE" "FLAD1 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"FLAD1 WILD-TYPE" "FLAD1 WILD-TYPE" "FLAD1 WILD-TYPE" "FLAD1 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"FLAD1 WILD-TYPE" "FLAD1 WILD-TYPE" "FLAD1 WILD-TYPE" "FLAD1 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"FLAD1 WILD-TYPE" "FLAD1 WILD-TYPE" "FLAD1 WILD-TYPE" "FLAD1 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"FLAD1 WILD-TYPE" "FLAD1 WILD-TYPE" "FLAD1 WILD-TYPE" "FLAD1 WILD-TYPE" 
     TCGA-US-A77J 
"FLAD1 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"FLAD1 WILD-TYPE" "FLAD1 WILD-TYPE" "FLAD1 WILD-TYPE" "FLAD1 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"FLAD1 WILD-TYPE" "FLAD1 WILD-TYPE" "FLAD1 WILD-TYPE" "FLAD1 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"FLAD1 WILD-TYPE" "FLAD1 WILD-TYPE" "FLAD1 WILD-TYPE" "FLAD1 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"FLAD1 WILD-TYPE" "FLAD1 WILD-TYPE" "FLAD1 WILD-TYPE" "FLAD1 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"FLAD1 WILD-TYPE" "FLAD1 WILD-TYPE" "FLAD1 WILD-TYPE" "FLAD1 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"FLAD1 WILD-TYPE" "FLAD1 WILD-TYPE" "FLAD1 WILD-TYPE" "FLAD1 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"FLAD1 WILD-TYPE" "FLAD1 WILD-TYPE" "FLAD1 WILD-TYPE"   "FLAD1 MUTATED" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
  "FLAD1 MUTATED" "FLAD1 WILD-TYPE" "FLAD1 WILD-TYPE" "FLAD1 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"FLAD1 WILD-TYPE" "FLAD1 WILD-TYPE" "FLAD1 WILD-TYPE" "FLAD1 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"FLAD1 WILD-TYPE" "FLAD1 WILD-TYPE" "FLAD1 WILD-TYPE" "FLAD1 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"FLAD1 WILD-TYPE" "FLAD1 WILD-TYPE" "FLAD1 WILD-TYPE"   "FLAD1 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"FLAD1 WILD-TYPE" "FLAD1 WILD-TYPE" "FLAD1 WILD-TYPE"   "FLAD1 MUTATED" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"FLAD1 WILD-TYPE" "FLAD1 WILD-TYPE" "FLAD1 WILD-TYPE" "FLAD1 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"FLAD1 WILD-TYPE" "FLAD1 WILD-TYPE" "FLAD1 WILD-TYPE" "FLAD1 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"FLAD1 WILD-TYPE" "FLAD1 WILD-TYPE" "FLAD1 WILD-TYPE" "FLAD1 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"FLAD1 WILD-TYPE" "FLAD1 WILD-TYPE" "FLAD1 WILD-TYPE" "FLAD1 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"FLAD1 WILD-TYPE" "FLAD1 WILD-TYPE" "FLAD1 WILD-TYPE" "FLAD1 WILD-TYPE" 
     TCGA-US-A77J 
"FLAD1 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"FLAD1 WILD-TYPE" "FLAD1 WILD-TYPE" "FLAD1 WILD-TYPE" "FLAD1 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"FLAD1 WILD-TYPE" "FLAD1 WILD-TYPE" "FLAD1 WILD-TYPE" "FLAD1 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"FLAD1 WILD-TYPE" "FLAD1 WILD-TYPE" "FLAD1 WILD-TYPE" "FLAD1 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"FLAD1 WILD-TYPE" "FLAD1 WILD-TYPE" "FLAD1 WILD-TYPE" "FLAD1 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"FLAD1 WILD-TYPE" "FLAD1 WILD-TYPE" "FLAD1 WILD-TYPE" "FLAD1 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"FLAD1 WILD-TYPE" "FLAD1 WILD-TYPE" "FLAD1 WILD-TYPE" "FLAD1 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"FLAD1 WILD-TYPE" "FLAD1 WILD-TYPE" "FLAD1 WILD-TYPE"   "FLAD1 MUTATED" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
  "FLAD1 MUTATED" "FLAD1 WILD-TYPE" "FLAD1 WILD-TYPE" "FLAD1 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"FLAD1 WILD-TYPE" "FLAD1 WILD-TYPE" "FLAD1 WILD-TYPE" "FLAD1 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"FLAD1 WILD-TYPE" "FLAD1 WILD-TYPE" "FLAD1 WILD-TYPE" "FLAD1 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"FLAD1 WILD-TYPE" "FLAD1 WILD-TYPE" "FLAD1 WILD-TYPE"   "FLAD1 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"FLAD1 WILD-TYPE" "FLAD1 WILD-TYPE" "FLAD1 WILD-TYPE"   "FLAD1 MUTATED" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"FLAD1 WILD-TYPE" "FLAD1 WILD-TYPE" "FLAD1 WILD-TYPE" "FLAD1 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"FLAD1 WILD-TYPE" "FLAD1 WILD-TYPE" "FLAD1 WILD-TYPE" "FLAD1 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"FLAD1 WILD-TYPE" "FLAD1 WILD-TYPE" "FLAD1 WILD-TYPE" "FLAD1 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"FLAD1 WILD-TYPE" "FLAD1 WILD-TYPE" "FLAD1 WILD-TYPE" "FLAD1 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"FLAD1 WILD-TYPE" "FLAD1 WILD-TYPE" "FLAD1 WILD-TYPE" "FLAD1 WILD-TYPE" 
     TCGA-US-A77J 
"FLAD1 WILD-TYPE" 
[1] "hr=" "1.7"
D365V2, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  FLAD1 MUTATED          0        1         0         4         0        0
  FLAD1 WILD-TYPE        1        3        11        47         2        3
D365V3, multiclass
                 vv
clus              T1+T2 T3+T4
  FLAD1 MUTATED       1     4
  FLAD1 WILD-TYPE     5    62
D365V4, multiclass
       clus
vv      FLAD1 MUTATED FLAD1 WILD-TYPE
  T1+T2             1               5
  T3+T4             4              62
D365V5, binary
                 cls
clus               0  1
  FLAD1 MUTATED    1  4
  FLAD1 WILD-TYPE 16 50
[1] "tbl2"
                 cls
clus              [,1] [,2]
  FLAD1 MUTATED      1    4
  FLAD1 WILD-TYPE   16   50
   clus
vv  FLAD1 MUTATED FLAD1 WILD-TYPE
  0             1              16
  1             4              50
                 vv
clus              M0 M1 MX
  FLAD1 MUTATED    2  0  3
  FLAD1 WILD-TYPE 37  3 27
D365V6, multiclass
    clus
vv   FLAD1 MUTATED FLAD1 WILD-TYPE
  M0             2              37
  M1             0               3
  MX             3              27
D365V7, binary
                 cls
clus               0  1
  FLAD1 MUTATED    3  2
  FLAD1 WILD-TYPE 33 34
[1] "tbl2"
                 cls
clus              [,1] [,2]
  FLAD1 MUTATED      3    2
  FLAD1 WILD-TYPE   33   34
        clus
vv       FLAD1 MUTATED FLAD1 WILD-TYPE
  FEMALE             3              33
  MALE               2              34
                 vv
clus              PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  FLAD1 MUTATED                                     5
  FLAD1 WILD-TYPE                                  60
                 vv
clus              PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  FLAD1 MUTATED                                       0
  FLAD1 WILD-TYPE                                     4
                 vv
clus              PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  FLAD1 MUTATED                                                  0
  FLAD1 WILD-TYPE                                                2
D365V8, multiclass
                                                  clus
vv                                                 FLAD1 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                          5
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                        0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA             0
                                                  clus
vv                                                 FLAD1 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                           60
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                          4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA               2
D365V9, continuous
[1] "Remove cluster labels:" "FLAD1 MUTATED"         
clus
  FLAD1 MUTATED FLAD1 WILD-TYPE 
              2              20 
     TCGA-F2-6880      TCGA-FB-A4P5      TCGA-FB-A4P6      TCGA-FB-A5VM 
"FLAD1 WILD-TYPE" "FLAD1 WILD-TYPE" "FLAD1 WILD-TYPE" "FLAD1 WILD-TYPE" 
     TCGA-FB-A78T      TCGA-FB-A7DR      TCGA-H6-8124      TCGA-H6-A45N 
"FLAD1 WILD-TYPE" "FLAD1 WILD-TYPE" "FLAD1 WILD-TYPE" "FLAD1 WILD-TYPE" 
     TCGA-H8-A6C1      TCGA-IB-7644      TCGA-IB-7649      TCGA-IB-7885 
"FLAD1 WILD-TYPE" "FLAD1 WILD-TYPE" "FLAD1 WILD-TYPE" "FLAD1 WILD-TYPE" 
     TCGA-IB-7886      TCGA-IB-7891      TCGA-IB-8126      TCGA-IB-8127 
"FLAD1 WILD-TYPE" "FLAD1 WILD-TYPE" "FLAD1 WILD-TYPE" "FLAD1 WILD-TYPE" 
     TCGA-IB-A5SS      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"FLAD1 WILD-TYPE" "FLAD1 WILD-TYPE" "FLAD1 WILD-TYPE" "FLAD1 WILD-TYPE" 
D365V10, continuous
[1] "Remove cluster labels:" "FLAD1 MUTATED"         
clus
  FLAD1 MUTATED FLAD1 WILD-TYPE 
              1              18 
     TCGA-FB-A4P5      TCGA-FB-A4P6      TCGA-FB-A5VM      TCGA-FB-A78T 
"FLAD1 WILD-TYPE" "FLAD1 WILD-TYPE" "FLAD1 WILD-TYPE" "FLAD1 WILD-TYPE" 
     TCGA-FB-A7DR      TCGA-H6-8124      TCGA-H8-A6C1      TCGA-IB-7644 
"FLAD1 WILD-TYPE" "FLAD1 WILD-TYPE" "FLAD1 WILD-TYPE" "FLAD1 WILD-TYPE" 
     TCGA-IB-7649      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7891 
"FLAD1 WILD-TYPE" "FLAD1 WILD-TYPE" "FLAD1 WILD-TYPE" "FLAD1 WILD-TYPE" 
     TCGA-IB-8126      TCGA-IB-8127      TCGA-IB-A5SS      TCGA-IB-A6UG 
"FLAD1 WILD-TYPE" "FLAD1 WILD-TYPE" "FLAD1 WILD-TYPE" "FLAD1 WILD-TYPE" 
     TCGA-LB-A7SX      TCGA-OE-A75W 
"FLAD1 WILD-TYPE" "FLAD1 WILD-TYPE" 
                 vv
clus              R0 R1 RX
  FLAD1 MUTATED    4  1  0
  FLAD1 WILD-TYPE 38 23  2
D365V11, multiclass
    clus
vv   FLAD1 MUTATED FLAD1 WILD-TYPE
  R0             4              38
  R1             1              23
  RX             0               2
D365V12, continuous

Clustering(366) Variable = PDE12 MUTATION ANALYSIS
D366V1, survival
                 sevent
clus2              0  1
  PDE12 MUTATED    2  1
  PDE12 WILD-TYPE 38 28
  PDE12 MUTATED PDE12 WILD-TYPE 
              3              66 
  PDE12 MUTATED PDE12 WILD-TYPE 
              1              28 
$`PDE12 MUTATED`
TCGA-FB-A4P6 TCGA-HZ-8003 TCGA-HZ-8005 
       11.93         0.69         3.95 

$`PDE12 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P5 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR TCGA-FZ-5920 
        0.13        12.66         2.47         0.03         5.46         2.01 
TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7289 
       36.20        20.81        12.89         7.66        13.02         7.89 
TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 
        0.92         0.66         0.13         0.26        12.13        11.87 
TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8636 
        0.26         0.62         0.79         0.92         0.53         0.16 
TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 
        2.99         0.76         0.95         6.38         1.51        11.41 
TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7651 TCGA-IB-7652 
       49.38         4.77        21.90        15.35        19.82        15.65 
TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 
       27.98         4.04         3.62        43.79        15.81        19.66 
TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO 
       16.04         3.85        15.98         0.56        17.16        10.82 
TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX 
        9.86         7.20        15.12         0.26         1.35         4.18 
TCGA-OE-A75W TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
        3.62         8.12        13.68        16.80        14.14        18.67 

  PDE12 MUTATED PDE12 WILD-TYPE 
           0.69            0.03 
  PDE12 MUTATED PDE12 WILD-TYPE 
          11.93           49.38 
  PDE12 MUTATED PDE12 WILD-TYPE 
          3.950           7.775 
[1] "0.7 - 11.9 (4.0)" "0.0 - 49.4 (7.8)"
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"PDE12 WILD-TYPE" "PDE12 WILD-TYPE" "PDE12 WILD-TYPE" "PDE12 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"PDE12 WILD-TYPE" "PDE12 WILD-TYPE" "PDE12 WILD-TYPE"   "PDE12 MUTATED" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"PDE12 WILD-TYPE" "PDE12 WILD-TYPE" "PDE12 WILD-TYPE" "PDE12 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"PDE12 WILD-TYPE" "PDE12 WILD-TYPE" "PDE12 WILD-TYPE" "PDE12 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"PDE12 WILD-TYPE" "PDE12 WILD-TYPE" "PDE12 WILD-TYPE" "PDE12 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"PDE12 WILD-TYPE" "PDE12 WILD-TYPE" "PDE12 WILD-TYPE" "PDE12 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"PDE12 WILD-TYPE" "PDE12 WILD-TYPE" "PDE12 WILD-TYPE" "PDE12 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
  "PDE12 MUTATED"   "PDE12 MUTATED" "PDE12 WILD-TYPE" "PDE12 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"PDE12 WILD-TYPE" "PDE12 WILD-TYPE" "PDE12 WILD-TYPE" "PDE12 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"PDE12 WILD-TYPE" "PDE12 WILD-TYPE" "PDE12 WILD-TYPE" "PDE12 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"PDE12 WILD-TYPE" "PDE12 WILD-TYPE" "PDE12 WILD-TYPE" "PDE12 WILD-TYPE" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"PDE12 WILD-TYPE" "PDE12 WILD-TYPE" "PDE12 WILD-TYPE" "PDE12 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"PDE12 WILD-TYPE" "PDE12 WILD-TYPE" "PDE12 WILD-TYPE" "PDE12 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"PDE12 WILD-TYPE" "PDE12 WILD-TYPE" "PDE12 WILD-TYPE" "PDE12 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"PDE12 WILD-TYPE" "PDE12 WILD-TYPE" "PDE12 WILD-TYPE" "PDE12 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"PDE12 WILD-TYPE" "PDE12 WILD-TYPE" "PDE12 WILD-TYPE" "PDE12 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"PDE12 WILD-TYPE" "PDE12 WILD-TYPE" "PDE12 WILD-TYPE" "PDE12 WILD-TYPE" 
     TCGA-US-A77J 
"PDE12 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"PDE12 WILD-TYPE" "PDE12 WILD-TYPE" "PDE12 WILD-TYPE" "PDE12 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"PDE12 WILD-TYPE" "PDE12 WILD-TYPE" "PDE12 WILD-TYPE"   "PDE12 MUTATED" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"PDE12 WILD-TYPE" "PDE12 WILD-TYPE" "PDE12 WILD-TYPE" "PDE12 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"PDE12 WILD-TYPE" "PDE12 WILD-TYPE" "PDE12 WILD-TYPE" "PDE12 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"PDE12 WILD-TYPE" "PDE12 WILD-TYPE" "PDE12 WILD-TYPE" "PDE12 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"PDE12 WILD-TYPE" "PDE12 WILD-TYPE" "PDE12 WILD-TYPE" "PDE12 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"PDE12 WILD-TYPE" "PDE12 WILD-TYPE" "PDE12 WILD-TYPE" "PDE12 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
  "PDE12 MUTATED"   "PDE12 MUTATED" "PDE12 WILD-TYPE" "PDE12 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"PDE12 WILD-TYPE" "PDE12 WILD-TYPE" "PDE12 WILD-TYPE" "PDE12 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"PDE12 WILD-TYPE" "PDE12 WILD-TYPE" "PDE12 WILD-TYPE" "PDE12 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"PDE12 WILD-TYPE" "PDE12 WILD-TYPE" "PDE12 WILD-TYPE" "PDE12 WILD-TYPE" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"PDE12 WILD-TYPE" "PDE12 WILD-TYPE" "PDE12 WILD-TYPE" "PDE12 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"PDE12 WILD-TYPE" "PDE12 WILD-TYPE" "PDE12 WILD-TYPE" "PDE12 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"PDE12 WILD-TYPE" "PDE12 WILD-TYPE" "PDE12 WILD-TYPE" "PDE12 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"PDE12 WILD-TYPE" "PDE12 WILD-TYPE" "PDE12 WILD-TYPE" "PDE12 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"PDE12 WILD-TYPE" "PDE12 WILD-TYPE" "PDE12 WILD-TYPE" "PDE12 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"PDE12 WILD-TYPE" "PDE12 WILD-TYPE" "PDE12 WILD-TYPE" "PDE12 WILD-TYPE" 
     TCGA-US-A77J 
"PDE12 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"PDE12 WILD-TYPE" "PDE12 WILD-TYPE" "PDE12 WILD-TYPE" "PDE12 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"PDE12 WILD-TYPE" "PDE12 WILD-TYPE" "PDE12 WILD-TYPE"   "PDE12 MUTATED" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"PDE12 WILD-TYPE" "PDE12 WILD-TYPE" "PDE12 WILD-TYPE" "PDE12 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"PDE12 WILD-TYPE" "PDE12 WILD-TYPE" "PDE12 WILD-TYPE" "PDE12 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"PDE12 WILD-TYPE" "PDE12 WILD-TYPE" "PDE12 WILD-TYPE" "PDE12 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"PDE12 WILD-TYPE" "PDE12 WILD-TYPE" "PDE12 WILD-TYPE" "PDE12 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"PDE12 WILD-TYPE" "PDE12 WILD-TYPE" "PDE12 WILD-TYPE" "PDE12 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
  "PDE12 MUTATED"   "PDE12 MUTATED" "PDE12 WILD-TYPE" "PDE12 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"PDE12 WILD-TYPE" "PDE12 WILD-TYPE" "PDE12 WILD-TYPE" "PDE12 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"PDE12 WILD-TYPE" "PDE12 WILD-TYPE" "PDE12 WILD-TYPE" "PDE12 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"PDE12 WILD-TYPE" "PDE12 WILD-TYPE" "PDE12 WILD-TYPE" "PDE12 WILD-TYPE" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"PDE12 WILD-TYPE" "PDE12 WILD-TYPE" "PDE12 WILD-TYPE" "PDE12 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"PDE12 WILD-TYPE" "PDE12 WILD-TYPE" "PDE12 WILD-TYPE" "PDE12 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"PDE12 WILD-TYPE" "PDE12 WILD-TYPE" "PDE12 WILD-TYPE" "PDE12 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"PDE12 WILD-TYPE" "PDE12 WILD-TYPE" "PDE12 WILD-TYPE" "PDE12 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"PDE12 WILD-TYPE" "PDE12 WILD-TYPE" "PDE12 WILD-TYPE" "PDE12 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"PDE12 WILD-TYPE" "PDE12 WILD-TYPE" "PDE12 WILD-TYPE" "PDE12 WILD-TYPE" 
     TCGA-US-A77J 
"PDE12 WILD-TYPE" 
[1] "hr=" "2"  
D366V2, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  PDE12 MUTATED          0        0         0         3         0        0
  PDE12 WILD-TYPE        1        4        11        48         2        3
D366V3, multiclass
                 vv
clus              T1+T2 T3+T4
  PDE12 MUTATED       0     3
  PDE12 WILD-TYPE     6    63
D366V4, multiclass
       clus
vv      PDE12 MUTATED PDE12 WILD-TYPE
  T1+T2             0               6
  T3+T4             3              63
D366V5, binary
                 cls
clus               0  1
  PDE12 MUTATED    0  3
  PDE12 WILD-TYPE 17 51
[1] "tbl2"
                 cls
clus              [,1] [,2]
  PDE12 MUTATED      0    3
  PDE12 WILD-TYPE   17   51
   clus
vv  PDE12 MUTATED PDE12 WILD-TYPE
  0             0              17
  1             3              51
                 vv
clus              M0 M1 MX
  PDE12 MUTATED    0  0  3
  PDE12 WILD-TYPE 39  3 27
D366V6, multiclass
    clus
vv   PDE12 MUTATED PDE12 WILD-TYPE
  M0             0              39
  M1             0               3
  MX             3              27
D366V7, binary
                 cls
clus               0  1
  PDE12 MUTATED    1  2
  PDE12 WILD-TYPE 35 34
[1] "tbl2"
                 cls
clus              [,1] [,2]
  PDE12 MUTATED      1    2
  PDE12 WILD-TYPE   35   34
        clus
vv       PDE12 MUTATED PDE12 WILD-TYPE
  FEMALE             1              35
  MALE               2              34
                 vv
clus              PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  PDE12 MUTATED                                     3
  PDE12 WILD-TYPE                                  62
                 vv
clus              PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  PDE12 MUTATED                                       0
  PDE12 WILD-TYPE                                     4
                 vv
clus              PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  PDE12 MUTATED                                                  0
  PDE12 WILD-TYPE                                                2
D366V8, multiclass
                                                  clus
vv                                                 PDE12 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                          3
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                        0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA             0
                                                  clus
vv                                                 PDE12 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                           62
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                          4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA               2
D366V9, continuous
[1] "Remove cluster labels:" "PDE12 MUTATED"         
clus
  PDE12 MUTATED PDE12 WILD-TYPE 
              1              21 
     TCGA-F2-6880      TCGA-FB-A4P5      TCGA-FB-A5VM      TCGA-FB-A78T 
"PDE12 WILD-TYPE" "PDE12 WILD-TYPE" "PDE12 WILD-TYPE" "PDE12 WILD-TYPE" 
     TCGA-FB-A7DR      TCGA-H6-8124      TCGA-H6-A45N      TCGA-H8-A6C1 
"PDE12 WILD-TYPE" "PDE12 WILD-TYPE" "PDE12 WILD-TYPE" "PDE12 WILD-TYPE" 
     TCGA-IB-7644      TCGA-IB-7649      TCGA-IB-7651      TCGA-IB-7885 
"PDE12 WILD-TYPE" "PDE12 WILD-TYPE" "PDE12 WILD-TYPE" "PDE12 WILD-TYPE" 
     TCGA-IB-7886      TCGA-IB-7887      TCGA-IB-7891      TCGA-IB-8126 
"PDE12 WILD-TYPE" "PDE12 WILD-TYPE" "PDE12 WILD-TYPE" "PDE12 WILD-TYPE" 
     TCGA-IB-8127      TCGA-IB-A5SS      TCGA-IB-A6UG      TCGA-LB-A7SX 
"PDE12 WILD-TYPE" "PDE12 WILD-TYPE" "PDE12 WILD-TYPE" "PDE12 WILD-TYPE" 
     TCGA-OE-A75W 
"PDE12 WILD-TYPE" 
D366V10, continuous
[1] "Remove cluster labels:" "PDE12 MUTATED"         
clus
  PDE12 MUTATED PDE12 WILD-TYPE 
              1              18 
     TCGA-FB-A4P5      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"PDE12 WILD-TYPE" "PDE12 WILD-TYPE" "PDE12 WILD-TYPE" "PDE12 WILD-TYPE" 
     TCGA-H6-8124      TCGA-H8-A6C1      TCGA-IB-7644      TCGA-IB-7649 
"PDE12 WILD-TYPE" "PDE12 WILD-TYPE" "PDE12 WILD-TYPE" "PDE12 WILD-TYPE" 
     TCGA-IB-7651      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7891 
"PDE12 WILD-TYPE" "PDE12 WILD-TYPE" "PDE12 WILD-TYPE" "PDE12 WILD-TYPE" 
     TCGA-IB-8126      TCGA-IB-8127      TCGA-IB-A5SS      TCGA-IB-A6UG 
"PDE12 WILD-TYPE" "PDE12 WILD-TYPE" "PDE12 WILD-TYPE" "PDE12 WILD-TYPE" 
     TCGA-LB-A7SX      TCGA-OE-A75W 
"PDE12 WILD-TYPE" "PDE12 WILD-TYPE" 
                 vv
clus              R0 R1 RX
  PDE12 MUTATED    1  1  0
  PDE12 WILD-TYPE 41 23  2
D366V11, multiclass
[1] "Remove cluster labels:" "PDE12 MUTATED"         
clus
  PDE12 MUTATED PDE12 WILD-TYPE 
              2              66 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"PDE12 WILD-TYPE" "PDE12 WILD-TYPE" "PDE12 WILD-TYPE" "PDE12 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A5VM 
"PDE12 WILD-TYPE" "PDE12 WILD-TYPE" "PDE12 WILD-TYPE" "PDE12 WILD-TYPE" 
     TCGA-FB-A78T      TCGA-FB-A7DR      TCGA-FZ-5920      TCGA-FZ-5922 
"PDE12 WILD-TYPE" "PDE12 WILD-TYPE" "PDE12 WILD-TYPE" "PDE12 WILD-TYPE" 
     TCGA-FZ-5923      TCGA-H6-8124      TCGA-H8-A6C1      TCGA-HZ-7289 
"PDE12 WILD-TYPE" "PDE12 WILD-TYPE" "PDE12 WILD-TYPE" "PDE12 WILD-TYPE" 
     TCGA-HZ-7918      TCGA-HZ-7919      TCGA-HZ-7920      TCGA-HZ-7922 
"PDE12 WILD-TYPE" "PDE12 WILD-TYPE" "PDE12 WILD-TYPE" "PDE12 WILD-TYPE" 
     TCGA-HZ-7923      TCGA-HZ-7924      TCGA-HZ-7925      TCGA-HZ-7926 
"PDE12 WILD-TYPE" "PDE12 WILD-TYPE" "PDE12 WILD-TYPE" "PDE12 WILD-TYPE" 
     TCGA-HZ-8001      TCGA-HZ-8002      TCGA-HZ-8315      TCGA-HZ-8317 
"PDE12 WILD-TYPE" "PDE12 WILD-TYPE" "PDE12 WILD-TYPE" "PDE12 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8637      TCGA-HZ-8638      TCGA-HZ-A49G 
"PDE12 WILD-TYPE" "PDE12 WILD-TYPE" "PDE12 WILD-TYPE" "PDE12 WILD-TYPE" 
     TCGA-HZ-A49H      TCGA-HZ-A49I      TCGA-HZ-A4BH      TCGA-HZ-A4BK 
"PDE12 WILD-TYPE" "PDE12 WILD-TYPE" "PDE12 WILD-TYPE" "PDE12 WILD-TYPE" 
     TCGA-IB-7644      TCGA-IB-7645      TCGA-IB-7646      TCGA-IB-7647 
"PDE12 WILD-TYPE" "PDE12 WILD-TYPE" "PDE12 WILD-TYPE" "PDE12 WILD-TYPE" 
     TCGA-IB-7649      TCGA-IB-7651      TCGA-IB-7652      TCGA-IB-7885 
"PDE12 WILD-TYPE" "PDE12 WILD-TYPE" "PDE12 WILD-TYPE" "PDE12 WILD-TYPE" 
     TCGA-IB-7886      TCGA-IB-7887      TCGA-IB-7888      TCGA-IB-7889 
"PDE12 WILD-TYPE" "PDE12 WILD-TYPE" "PDE12 WILD-TYPE" "PDE12 WILD-TYPE" 
     TCGA-IB-7890      TCGA-IB-7891      TCGA-IB-7893      TCGA-IB-7897 
"PDE12 WILD-TYPE" "PDE12 WILD-TYPE" "PDE12 WILD-TYPE" "PDE12 WILD-TYPE" 
     TCGA-IB-8126      TCGA-IB-8127      TCGA-IB-A5SO      TCGA-IB-A5SP 
"PDE12 WILD-TYPE" "PDE12 WILD-TYPE" "PDE12 WILD-TYPE" "PDE12 WILD-TYPE" 
     TCGA-IB-A5SQ      TCGA-IB-A5SS      TCGA-IB-A5ST      TCGA-IB-A6UG 
"PDE12 WILD-TYPE" "PDE12 WILD-TYPE" "PDE12 WILD-TYPE" "PDE12 WILD-TYPE" 
     TCGA-LB-A7SX      TCGA-OE-A75W      TCGA-Q3-A5QY      TCGA-US-A779 
"PDE12 WILD-TYPE" "PDE12 WILD-TYPE" "PDE12 WILD-TYPE" "PDE12 WILD-TYPE" 
     TCGA-US-A77E      TCGA-US-A77J 
"PDE12 WILD-TYPE" "PDE12 WILD-TYPE" 
D366V12, continuous

Clustering(367) Variable = PNMA3 MUTATION ANALYSIS
D367V1, survival
                 sevent
clus2              0  1
  PNMA3 MUTATED    2  1
  PNMA3 WILD-TYPE 38 28
  PNMA3 MUTATED PNMA3 WILD-TYPE 
              3              66 
  PNMA3 MUTATED PNMA3 WILD-TYPE 
              1              28 
$`PNMA3 MUTATED`
TCGA-H6-8124 TCGA-IB-7888 TCGA-IB-8126 
       12.89        43.79         0.56 

$`PNMA3 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P5 TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR 
        0.13        11.93        12.66         2.47         0.03         5.46 
TCGA-FZ-5920 TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7289 
        2.01        36.20        20.81         7.66        13.02         7.89 
TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 
        0.92         0.66         0.13         0.26        12.13        11.87 
TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 
        0.26         0.62         0.79         0.69         3.95         0.92 
TCGA-HZ-8317 TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH 
        0.53         0.16         2.99         0.76         0.95         6.38 
TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 
        1.51        11.41        49.38         4.77        21.90        15.35 
TCGA-IB-7651 TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7889 
       19.82        15.65        27.98         4.04         3.62        15.81 
TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-8127 TCGA-IB-A5SO 
       19.66        16.04         3.85        15.98        17.16        10.82 
TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX 
        9.86         7.20        15.12         0.26         1.35         4.18 
TCGA-OE-A75W TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
        3.62         8.12        13.68        16.80        14.14        18.67 

  PNMA3 MUTATED PNMA3 WILD-TYPE 
           0.56            0.03 
  PNMA3 MUTATED PNMA3 WILD-TYPE 
          43.79           49.38 
  PNMA3 MUTATED PNMA3 WILD-TYPE 
          12.89            7.43 
[1] "0.6 - 43.8 (12.9)" "0.0 - 49.4 (7.4)" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"PNMA3 WILD-TYPE" "PNMA3 WILD-TYPE" "PNMA3 WILD-TYPE" "PNMA3 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"PNMA3 WILD-TYPE" "PNMA3 WILD-TYPE" "PNMA3 WILD-TYPE" "PNMA3 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"PNMA3 WILD-TYPE" "PNMA3 WILD-TYPE" "PNMA3 WILD-TYPE" "PNMA3 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"PNMA3 WILD-TYPE" "PNMA3 WILD-TYPE" "PNMA3 WILD-TYPE"   "PNMA3 MUTATED" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"PNMA3 WILD-TYPE" "PNMA3 WILD-TYPE" "PNMA3 WILD-TYPE" "PNMA3 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"PNMA3 WILD-TYPE" "PNMA3 WILD-TYPE" "PNMA3 WILD-TYPE" "PNMA3 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"PNMA3 WILD-TYPE" "PNMA3 WILD-TYPE" "PNMA3 WILD-TYPE" "PNMA3 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"PNMA3 WILD-TYPE" "PNMA3 WILD-TYPE" "PNMA3 WILD-TYPE" "PNMA3 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"PNMA3 WILD-TYPE" "PNMA3 WILD-TYPE" "PNMA3 WILD-TYPE" "PNMA3 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"PNMA3 WILD-TYPE" "PNMA3 WILD-TYPE" "PNMA3 WILD-TYPE" "PNMA3 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"PNMA3 WILD-TYPE" "PNMA3 WILD-TYPE" "PNMA3 WILD-TYPE" "PNMA3 WILD-TYPE" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"PNMA3 WILD-TYPE" "PNMA3 WILD-TYPE" "PNMA3 WILD-TYPE" "PNMA3 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
  "PNMA3 MUTATED" "PNMA3 WILD-TYPE" "PNMA3 WILD-TYPE" "PNMA3 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"PNMA3 WILD-TYPE" "PNMA3 WILD-TYPE"   "PNMA3 MUTATED" "PNMA3 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"PNMA3 WILD-TYPE" "PNMA3 WILD-TYPE" "PNMA3 WILD-TYPE" "PNMA3 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"PNMA3 WILD-TYPE" "PNMA3 WILD-TYPE" "PNMA3 WILD-TYPE" "PNMA3 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"PNMA3 WILD-TYPE" "PNMA3 WILD-TYPE" "PNMA3 WILD-TYPE" "PNMA3 WILD-TYPE" 
     TCGA-US-A77J 
"PNMA3 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"PNMA3 WILD-TYPE" "PNMA3 WILD-TYPE" "PNMA3 WILD-TYPE" "PNMA3 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"PNMA3 WILD-TYPE" "PNMA3 WILD-TYPE" "PNMA3 WILD-TYPE" "PNMA3 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"PNMA3 WILD-TYPE" "PNMA3 WILD-TYPE" "PNMA3 WILD-TYPE" "PNMA3 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"PNMA3 WILD-TYPE" "PNMA3 WILD-TYPE" "PNMA3 WILD-TYPE"   "PNMA3 MUTATED" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"PNMA3 WILD-TYPE" "PNMA3 WILD-TYPE" "PNMA3 WILD-TYPE" "PNMA3 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"PNMA3 WILD-TYPE" "PNMA3 WILD-TYPE" "PNMA3 WILD-TYPE" "PNMA3 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"PNMA3 WILD-TYPE" "PNMA3 WILD-TYPE" "PNMA3 WILD-TYPE" "PNMA3 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"PNMA3 WILD-TYPE" "PNMA3 WILD-TYPE" "PNMA3 WILD-TYPE" "PNMA3 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"PNMA3 WILD-TYPE" "PNMA3 WILD-TYPE" "PNMA3 WILD-TYPE" "PNMA3 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"PNMA3 WILD-TYPE" "PNMA3 WILD-TYPE" "PNMA3 WILD-TYPE" "PNMA3 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"PNMA3 WILD-TYPE" "PNMA3 WILD-TYPE" "PNMA3 WILD-TYPE" "PNMA3 WILD-TYPE" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"PNMA3 WILD-TYPE" "PNMA3 WILD-TYPE" "PNMA3 WILD-TYPE" "PNMA3 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
  "PNMA3 MUTATED" "PNMA3 WILD-TYPE" "PNMA3 WILD-TYPE" "PNMA3 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"PNMA3 WILD-TYPE" "PNMA3 WILD-TYPE"   "PNMA3 MUTATED" "PNMA3 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"PNMA3 WILD-TYPE" "PNMA3 WILD-TYPE" "PNMA3 WILD-TYPE" "PNMA3 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"PNMA3 WILD-TYPE" "PNMA3 WILD-TYPE" "PNMA3 WILD-TYPE" "PNMA3 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"PNMA3 WILD-TYPE" "PNMA3 WILD-TYPE" "PNMA3 WILD-TYPE" "PNMA3 WILD-TYPE" 
     TCGA-US-A77J 
"PNMA3 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"PNMA3 WILD-TYPE" "PNMA3 WILD-TYPE" "PNMA3 WILD-TYPE" "PNMA3 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"PNMA3 WILD-TYPE" "PNMA3 WILD-TYPE" "PNMA3 WILD-TYPE" "PNMA3 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"PNMA3 WILD-TYPE" "PNMA3 WILD-TYPE" "PNMA3 WILD-TYPE" "PNMA3 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"PNMA3 WILD-TYPE" "PNMA3 WILD-TYPE" "PNMA3 WILD-TYPE"   "PNMA3 MUTATED" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"PNMA3 WILD-TYPE" "PNMA3 WILD-TYPE" "PNMA3 WILD-TYPE" "PNMA3 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"PNMA3 WILD-TYPE" "PNMA3 WILD-TYPE" "PNMA3 WILD-TYPE" "PNMA3 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"PNMA3 WILD-TYPE" "PNMA3 WILD-TYPE" "PNMA3 WILD-TYPE" "PNMA3 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"PNMA3 WILD-TYPE" "PNMA3 WILD-TYPE" "PNMA3 WILD-TYPE" "PNMA3 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"PNMA3 WILD-TYPE" "PNMA3 WILD-TYPE" "PNMA3 WILD-TYPE" "PNMA3 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"PNMA3 WILD-TYPE" "PNMA3 WILD-TYPE" "PNMA3 WILD-TYPE" "PNMA3 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"PNMA3 WILD-TYPE" "PNMA3 WILD-TYPE" "PNMA3 WILD-TYPE" "PNMA3 WILD-TYPE" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"PNMA3 WILD-TYPE" "PNMA3 WILD-TYPE" "PNMA3 WILD-TYPE" "PNMA3 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
  "PNMA3 MUTATED" "PNMA3 WILD-TYPE" "PNMA3 WILD-TYPE" "PNMA3 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"PNMA3 WILD-TYPE" "PNMA3 WILD-TYPE"   "PNMA3 MUTATED" "PNMA3 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"PNMA3 WILD-TYPE" "PNMA3 WILD-TYPE" "PNMA3 WILD-TYPE" "PNMA3 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"PNMA3 WILD-TYPE" "PNMA3 WILD-TYPE" "PNMA3 WILD-TYPE" "PNMA3 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"PNMA3 WILD-TYPE" "PNMA3 WILD-TYPE" "PNMA3 WILD-TYPE" "PNMA3 WILD-TYPE" 
     TCGA-US-A77J 
"PNMA3 WILD-TYPE" 
[1] "hr=" "3.2"
D367V2, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  PNMA3 MUTATED          0        0         1         2         1        0
  PNMA3 WILD-TYPE        1        4        10        49         1        3
D367V3, multiclass
                 vv
clus              T1+T2 T3+T4
  PNMA3 MUTATED       0     4
  PNMA3 WILD-TYPE     6    62
D367V4, multiclass
       clus
vv      PNMA3 MUTATED PNMA3 WILD-TYPE
  T1+T2             0               6
  T3+T4             4              62
D367V5, binary
                 cls
clus               0  1
  PNMA3 MUTATED    1  3
  PNMA3 WILD-TYPE 16 51
[1] "tbl2"
                 cls
clus              [,1] [,2]
  PNMA3 MUTATED      1    3
  PNMA3 WILD-TYPE   16   51
   clus
vv  PNMA3 MUTATED PNMA3 WILD-TYPE
  0             1              16
  1             3              51
                 vv
clus              M0 M1 MX
  PNMA3 MUTATED    3  0  1
  PNMA3 WILD-TYPE 36  3 29
D367V6, multiclass
    clus
vv   PNMA3 MUTATED PNMA3 WILD-TYPE
  M0             3              36
  M1             0               3
  MX             1              29
D367V7, binary
                 cls
clus               0  1
  PNMA3 MUTATED    4  0
  PNMA3 WILD-TYPE 32 36
[1] "tbl2"
                 cls
clus              [,1] [,2]
  PNMA3 MUTATED      4    0
  PNMA3 WILD-TYPE   32   36
        clus
vv       PNMA3 MUTATED PNMA3 WILD-TYPE
  FEMALE             4              32
  MALE               0              36
                 vv
clus              PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  PNMA3 MUTATED                                     4
  PNMA3 WILD-TYPE                                  61
                 vv
clus              PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  PNMA3 MUTATED                                       0
  PNMA3 WILD-TYPE                                     4
                 vv
clus              PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  PNMA3 MUTATED                                                  0
  PNMA3 WILD-TYPE                                                2
D367V8, multiclass
                                                  clus
vv                                                 PNMA3 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                          4
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                        0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA             0
                                                  clus
vv                                                 PNMA3 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                           61
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                          4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA               2
D367V9, continuous
[1] "Remove cluster labels:" "PNMA3 MUTATED"         
clus
  PNMA3 MUTATED PNMA3 WILD-TYPE 
              2              20 
     TCGA-F2-6880      TCGA-FB-A4P5      TCGA-FB-A4P6      TCGA-FB-A5VM 
"PNMA3 WILD-TYPE" "PNMA3 WILD-TYPE" "PNMA3 WILD-TYPE" "PNMA3 WILD-TYPE" 
     TCGA-FB-A78T      TCGA-FB-A7DR      TCGA-H6-A45N      TCGA-H8-A6C1 
"PNMA3 WILD-TYPE" "PNMA3 WILD-TYPE" "PNMA3 WILD-TYPE" "PNMA3 WILD-TYPE" 
     TCGA-IB-7644      TCGA-IB-7649      TCGA-IB-7651      TCGA-IB-7885 
"PNMA3 WILD-TYPE" "PNMA3 WILD-TYPE" "PNMA3 WILD-TYPE" "PNMA3 WILD-TYPE" 
     TCGA-IB-7886      TCGA-IB-7887      TCGA-IB-7891      TCGA-IB-8127 
"PNMA3 WILD-TYPE" "PNMA3 WILD-TYPE" "PNMA3 WILD-TYPE" "PNMA3 WILD-TYPE" 
     TCGA-IB-A5SS      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"PNMA3 WILD-TYPE" "PNMA3 WILD-TYPE" "PNMA3 WILD-TYPE" "PNMA3 WILD-TYPE" 
D367V10, continuous
[1] "Remove cluster labels:" "PNMA3 MUTATED"         
clus
  PNMA3 MUTATED PNMA3 WILD-TYPE 
              2              17 
     TCGA-FB-A4P5      TCGA-FB-A4P6      TCGA-FB-A5VM      TCGA-FB-A78T 
"PNMA3 WILD-TYPE" "PNMA3 WILD-TYPE" "PNMA3 WILD-TYPE" "PNMA3 WILD-TYPE" 
     TCGA-FB-A7DR      TCGA-H8-A6C1      TCGA-IB-7644      TCGA-IB-7649 
"PNMA3 WILD-TYPE" "PNMA3 WILD-TYPE" "PNMA3 WILD-TYPE" "PNMA3 WILD-TYPE" 
     TCGA-IB-7651      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7891 
"PNMA3 WILD-TYPE" "PNMA3 WILD-TYPE" "PNMA3 WILD-TYPE" "PNMA3 WILD-TYPE" 
     TCGA-IB-8127      TCGA-IB-A5SS      TCGA-IB-A6UG      TCGA-LB-A7SX 
"PNMA3 WILD-TYPE" "PNMA3 WILD-TYPE" "PNMA3 WILD-TYPE" "PNMA3 WILD-TYPE" 
     TCGA-OE-A75W 
"PNMA3 WILD-TYPE" 
                 vv
clus              R0 R1 RX
  PNMA3 MUTATED    3  1  0
  PNMA3 WILD-TYPE 39 23  2
D367V11, multiclass
    clus
vv   PNMA3 MUTATED PNMA3 WILD-TYPE
  R0             3              39
  R1             1              23
  RX             0               2
D367V12, continuous

Clustering(368) Variable = CEP72 MUTATION ANALYSIS
D368V1, survival
                 sevent
clus2              0  1
  CEP72 MUTATED    3  2
  CEP72 WILD-TYPE 37 27
  CEP72 MUTATED CEP72 WILD-TYPE 
              5              64 
  CEP72 MUTATED CEP72 WILD-TYPE 
              2              27 
$`CEP72 MUTATED`
TCGA-F2-7276 TCGA-H8-A6C1 TCGA-HZ-7925 TCGA-HZ-8638 TCGA-IB-7651 
        7.10        13.02        11.87         2.99        19.82 

$`CEP72 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-A44G TCGA-F2-A44H TCGA-FB-A4P5 
       10.98         9.70        11.84         5.03        19.27         0.13 
TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR TCGA-FZ-5920 
       11.93        12.66         2.47         0.03         5.46         2.01 
TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-HZ-7289 TCGA-HZ-7918 
       36.20        20.81        12.89         7.66         7.89         0.92 
TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7926 TCGA-HZ-8001 
        0.66         0.13         0.26        12.13         0.26         0.62 
TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8636 
        0.79         0.69         3.95         0.92         0.53         0.16 
TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7645 
        0.76         0.95         6.38         1.51        11.41        49.38 
TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7886 
        4.77        21.90        15.35        15.65        27.98         4.04 
TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-7893 
        3.62        43.79        15.81        19.66        16.04         3.85 
TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ 
       15.98         0.56        17.16        10.82         9.86         7.20 
TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W TCGA-PZ-A5RE 
       15.12         0.26         1.35         4.18         3.62         8.12 
TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
       13.68        16.80        14.14        18.67 

  CEP72 MUTATED CEP72 WILD-TYPE 
           2.99            0.03 
  CEP72 MUTATED CEP72 WILD-TYPE 
          19.82           49.38 
  CEP72 MUTATED CEP72 WILD-TYPE 
          11.87            7.43 
[1] "3.0 - 19.8 (11.9)" "0.0 - 49.4 (7.4)" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"CEP72 WILD-TYPE" "CEP72 WILD-TYPE" "CEP72 WILD-TYPE"   "CEP72 MUTATED" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"CEP72 WILD-TYPE" "CEP72 WILD-TYPE" "CEP72 WILD-TYPE" "CEP72 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"CEP72 WILD-TYPE" "CEP72 WILD-TYPE" "CEP72 WILD-TYPE" "CEP72 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"CEP72 WILD-TYPE" "CEP72 WILD-TYPE" "CEP72 WILD-TYPE" "CEP72 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"CEP72 WILD-TYPE"   "CEP72 MUTATED" "CEP72 WILD-TYPE" "CEP72 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"CEP72 WILD-TYPE" "CEP72 WILD-TYPE" "CEP72 WILD-TYPE" "CEP72 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
  "CEP72 MUTATED" "CEP72 WILD-TYPE" "CEP72 WILD-TYPE" "CEP72 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"CEP72 WILD-TYPE" "CEP72 WILD-TYPE" "CEP72 WILD-TYPE" "CEP72 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"CEP72 WILD-TYPE"   "CEP72 MUTATED" "CEP72 WILD-TYPE" "CEP72 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"CEP72 WILD-TYPE" "CEP72 WILD-TYPE" "CEP72 WILD-TYPE" "CEP72 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"CEP72 WILD-TYPE" "CEP72 WILD-TYPE" "CEP72 WILD-TYPE"   "CEP72 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"CEP72 WILD-TYPE" "CEP72 WILD-TYPE" "CEP72 WILD-TYPE" "CEP72 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"CEP72 WILD-TYPE" "CEP72 WILD-TYPE" "CEP72 WILD-TYPE" "CEP72 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"CEP72 WILD-TYPE" "CEP72 WILD-TYPE" "CEP72 WILD-TYPE" "CEP72 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"CEP72 WILD-TYPE" "CEP72 WILD-TYPE" "CEP72 WILD-TYPE" "CEP72 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"CEP72 WILD-TYPE" "CEP72 WILD-TYPE" "CEP72 WILD-TYPE" "CEP72 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"CEP72 WILD-TYPE" "CEP72 WILD-TYPE" "CEP72 WILD-TYPE" "CEP72 WILD-TYPE" 
     TCGA-US-A77J 
"CEP72 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"CEP72 WILD-TYPE" "CEP72 WILD-TYPE" "CEP72 WILD-TYPE"   "CEP72 MUTATED" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"CEP72 WILD-TYPE" "CEP72 WILD-TYPE" "CEP72 WILD-TYPE" "CEP72 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"CEP72 WILD-TYPE" "CEP72 WILD-TYPE" "CEP72 WILD-TYPE" "CEP72 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"CEP72 WILD-TYPE" "CEP72 WILD-TYPE" "CEP72 WILD-TYPE" "CEP72 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"CEP72 WILD-TYPE"   "CEP72 MUTATED" "CEP72 WILD-TYPE" "CEP72 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"CEP72 WILD-TYPE" "CEP72 WILD-TYPE" "CEP72 WILD-TYPE" "CEP72 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
  "CEP72 MUTATED" "CEP72 WILD-TYPE" "CEP72 WILD-TYPE" "CEP72 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"CEP72 WILD-TYPE" "CEP72 WILD-TYPE" "CEP72 WILD-TYPE" "CEP72 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"CEP72 WILD-TYPE"   "CEP72 MUTATED" "CEP72 WILD-TYPE" "CEP72 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"CEP72 WILD-TYPE" "CEP72 WILD-TYPE" "CEP72 WILD-TYPE" "CEP72 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"CEP72 WILD-TYPE" "CEP72 WILD-TYPE" "CEP72 WILD-TYPE"   "CEP72 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"CEP72 WILD-TYPE" "CEP72 WILD-TYPE" "CEP72 WILD-TYPE" "CEP72 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"CEP72 WILD-TYPE" "CEP72 WILD-TYPE" "CEP72 WILD-TYPE" "CEP72 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"CEP72 WILD-TYPE" "CEP72 WILD-TYPE" "CEP72 WILD-TYPE" "CEP72 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"CEP72 WILD-TYPE" "CEP72 WILD-TYPE" "CEP72 WILD-TYPE" "CEP72 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"CEP72 WILD-TYPE" "CEP72 WILD-TYPE" "CEP72 WILD-TYPE" "CEP72 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"CEP72 WILD-TYPE" "CEP72 WILD-TYPE" "CEP72 WILD-TYPE" "CEP72 WILD-TYPE" 
     TCGA-US-A77J 
"CEP72 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"CEP72 WILD-TYPE" "CEP72 WILD-TYPE" "CEP72 WILD-TYPE"   "CEP72 MUTATED" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"CEP72 WILD-TYPE" "CEP72 WILD-TYPE" "CEP72 WILD-TYPE" "CEP72 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"CEP72 WILD-TYPE" "CEP72 WILD-TYPE" "CEP72 WILD-TYPE" "CEP72 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"CEP72 WILD-TYPE" "CEP72 WILD-TYPE" "CEP72 WILD-TYPE" "CEP72 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"CEP72 WILD-TYPE"   "CEP72 MUTATED" "CEP72 WILD-TYPE" "CEP72 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"CEP72 WILD-TYPE" "CEP72 WILD-TYPE" "CEP72 WILD-TYPE" "CEP72 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
  "CEP72 MUTATED" "CEP72 WILD-TYPE" "CEP72 WILD-TYPE" "CEP72 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"CEP72 WILD-TYPE" "CEP72 WILD-TYPE" "CEP72 WILD-TYPE" "CEP72 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"CEP72 WILD-TYPE"   "CEP72 MUTATED" "CEP72 WILD-TYPE" "CEP72 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"CEP72 WILD-TYPE" "CEP72 WILD-TYPE" "CEP72 WILD-TYPE" "CEP72 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"CEP72 WILD-TYPE" "CEP72 WILD-TYPE" "CEP72 WILD-TYPE"   "CEP72 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"CEP72 WILD-TYPE" "CEP72 WILD-TYPE" "CEP72 WILD-TYPE" "CEP72 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"CEP72 WILD-TYPE" "CEP72 WILD-TYPE" "CEP72 WILD-TYPE" "CEP72 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"CEP72 WILD-TYPE" "CEP72 WILD-TYPE" "CEP72 WILD-TYPE" "CEP72 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"CEP72 WILD-TYPE" "CEP72 WILD-TYPE" "CEP72 WILD-TYPE" "CEP72 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"CEP72 WILD-TYPE" "CEP72 WILD-TYPE" "CEP72 WILD-TYPE" "CEP72 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"CEP72 WILD-TYPE" "CEP72 WILD-TYPE" "CEP72 WILD-TYPE" "CEP72 WILD-TYPE" 
     TCGA-US-A77J 
"CEP72 WILD-TYPE" 
[1] "hr=" "1.1"
D368V2, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  CEP72 MUTATED          1        0         1         3         0        0
  CEP72 WILD-TYPE        0        4        10        48         2        3
D368V3, multiclass
                 vv
clus              T1+T2 T3+T4
  CEP72 MUTATED       1     4
  CEP72 WILD-TYPE     5    62
D368V4, multiclass
       clus
vv      CEP72 MUTATED CEP72 WILD-TYPE
  T1+T2             1               5
  T3+T4             4              62
D368V5, binary
                 cls
clus               0  1
  CEP72 MUTATED    2  3
  CEP72 WILD-TYPE 15 51
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CEP72 MUTATED      2    3
  CEP72 WILD-TYPE   15   51
   clus
vv  CEP72 MUTATED CEP72 WILD-TYPE
  0             2              15
  1             3              51
                 vv
clus              M0 M1 MX
  CEP72 MUTATED    2  0  3
  CEP72 WILD-TYPE 37  3 27
D368V6, multiclass
    clus
vv   CEP72 MUTATED CEP72 WILD-TYPE
  M0             2              37
  M1             0               3
  MX             3              27
D368V7, binary
                 cls
clus               0  1
  CEP72 MUTATED    2  3
  CEP72 WILD-TYPE 34 33
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CEP72 MUTATED      2    3
  CEP72 WILD-TYPE   34   33
        clus
vv       CEP72 MUTATED CEP72 WILD-TYPE
  FEMALE             2              34
  MALE               3              33
                 vv
clus              PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  CEP72 MUTATED                                     3
  CEP72 WILD-TYPE                                  62
                 vv
clus              PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  CEP72 MUTATED                                       1
  CEP72 WILD-TYPE                                     3
                 vv
clus              PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  CEP72 MUTATED                                                  1
  CEP72 WILD-TYPE                                                1
D368V8, multiclass
                                                  clus
vv                                                 CEP72 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                          3
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                        1
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA             1
                                                  clus
vv                                                 CEP72 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                           62
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                          3
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA               1
D368V9, continuous
[1] "Remove cluster labels:" "CEP72 MUTATED"         
clus
  CEP72 MUTATED CEP72 WILD-TYPE 
              2              20 
     TCGA-F2-6880      TCGA-FB-A4P5      TCGA-FB-A4P6      TCGA-FB-A5VM 
"CEP72 WILD-TYPE" "CEP72 WILD-TYPE" "CEP72 WILD-TYPE" "CEP72 WILD-TYPE" 
     TCGA-FB-A78T      TCGA-FB-A7DR      TCGA-H6-8124      TCGA-H6-A45N 
"CEP72 WILD-TYPE" "CEP72 WILD-TYPE" "CEP72 WILD-TYPE" "CEP72 WILD-TYPE" 
     TCGA-IB-7644      TCGA-IB-7649      TCGA-IB-7885      TCGA-IB-7886 
"CEP72 WILD-TYPE" "CEP72 WILD-TYPE" "CEP72 WILD-TYPE" "CEP72 WILD-TYPE" 
     TCGA-IB-7887      TCGA-IB-7891      TCGA-IB-8126      TCGA-IB-8127 
"CEP72 WILD-TYPE" "CEP72 WILD-TYPE" "CEP72 WILD-TYPE" "CEP72 WILD-TYPE" 
     TCGA-IB-A5SS      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"CEP72 WILD-TYPE" "CEP72 WILD-TYPE" "CEP72 WILD-TYPE" "CEP72 WILD-TYPE" 
D368V10, continuous
[1] "Remove cluster labels:" "CEP72 MUTATED"         
clus
  CEP72 MUTATED CEP72 WILD-TYPE 
              2              17 
     TCGA-FB-A4P5      TCGA-FB-A4P6      TCGA-FB-A5VM      TCGA-FB-A78T 
"CEP72 WILD-TYPE" "CEP72 WILD-TYPE" "CEP72 WILD-TYPE" "CEP72 WILD-TYPE" 
     TCGA-FB-A7DR      TCGA-H6-8124      TCGA-IB-7644      TCGA-IB-7649 
"CEP72 WILD-TYPE" "CEP72 WILD-TYPE" "CEP72 WILD-TYPE" "CEP72 WILD-TYPE" 
     TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7891      TCGA-IB-8126 
"CEP72 WILD-TYPE" "CEP72 WILD-TYPE" "CEP72 WILD-TYPE" "CEP72 WILD-TYPE" 
     TCGA-IB-8127      TCGA-IB-A5SS      TCGA-IB-A6UG      TCGA-LB-A7SX 
"CEP72 WILD-TYPE" "CEP72 WILD-TYPE" "CEP72 WILD-TYPE" "CEP72 WILD-TYPE" 
     TCGA-OE-A75W 
"CEP72 WILD-TYPE" 
                 vv
clus              R0 R1 RX
  CEP72 MUTATED    5  0  0
  CEP72 WILD-TYPE 37 24  2
D368V11, multiclass
    clus
vv   CEP72 MUTATED CEP72 WILD-TYPE
  R0             5              37
  R1             0              24
  RX             0               2
D368V12, continuous

Clustering(369) Variable = COL5A1 MUTATION ANALYSIS
D369V1, survival
                  sevent
clus2               0  1
  COL5A1 MUTATED    2  6
  COL5A1 WILD-TYPE 38 23
  COL5A1 MUTATED COL5A1 WILD-TYPE 
               8               61 
  COL5A1 MUTATED COL5A1 WILD-TYPE 
               6               23 
$`COL5A1 MUTATED`
TCGA-F2-6879 TCGA-FB-A545 TCGA-HZ-8636 TCGA-IB-7646 TCGA-IB-7651 TCGA-IB-7886 
       10.98        12.66         0.16         4.77        19.82         4.04 
TCGA-IB-7888 TCGA-IB-7897 
       43.79        15.98 

$`COL5A1 WILD-TYPE`
TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H TCGA-FB-A4P5 
        9.70        11.84         7.10         5.03        19.27         0.13 
TCGA-FB-A4P6 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR TCGA-FZ-5920 TCGA-FZ-5922 
       11.93         2.47         0.03         5.46         2.01        36.20 
TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7289 TCGA-HZ-7918 
       20.81        12.89         7.66        13.02         7.89         0.92 
TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 
        0.66         0.13         0.26        12.13        11.87         0.26 
TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 
        0.62         0.79         0.69         3.95         0.92         0.53 
TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 
        2.99         0.76         0.95         6.38         1.51        11.41 
TCGA-IB-7645 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7887 
       49.38        21.90        15.35        15.65        27.98         3.62 
TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-8126 TCGA-IB-8127 
       15.81        19.66        16.04         3.85         0.56        17.16 
TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG 
       10.82         9.86         7.20        15.12         0.26         1.35 
TCGA-LB-A7SX TCGA-OE-A75W TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E 
        4.18         3.62         8.12        13.68        16.80        14.14 
TCGA-US-A77J 
       18.67 

  COL5A1 MUTATED COL5A1 WILD-TYPE 
            0.16             0.03 
  COL5A1 MUTATED COL5A1 WILD-TYPE 
           43.79            49.38 
  COL5A1 MUTATED COL5A1 WILD-TYPE 
           11.82             7.20 
[1] "0.2 - 43.8 (11.8)" "0.0 - 49.4 (7.2)" 
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
  "COL5A1 MUTATED" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
  "COL5A1 MUTATED" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
"COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
"COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
"COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
  "COL5A1 MUTATED" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
"COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
  "COL5A1 MUTATED" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE"   "COL5A1 MUTATED" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
"COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE"   "COL5A1 MUTATED" "COL5A1 WILD-TYPE" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
  "COL5A1 MUTATED" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
"COL5A1 WILD-TYPE"   "COL5A1 MUTATED" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
"COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
      TCGA-US-A77J 
"COL5A1 WILD-TYPE" 
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
  "COL5A1 MUTATED" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
  "COL5A1 MUTATED" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
"COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
"COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
"COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
  "COL5A1 MUTATED" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
"COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
  "COL5A1 MUTATED" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE"   "COL5A1 MUTATED" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
"COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE"   "COL5A1 MUTATED" "COL5A1 WILD-TYPE" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
  "COL5A1 MUTATED" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
"COL5A1 WILD-TYPE"   "COL5A1 MUTATED" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
"COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
      TCGA-US-A77J 
"COL5A1 WILD-TYPE" 
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
  "COL5A1 MUTATED" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
  "COL5A1 MUTATED" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
"COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
"COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
"COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
  "COL5A1 MUTATED" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
"COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
  "COL5A1 MUTATED" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE"   "COL5A1 MUTATED" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
"COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE"   "COL5A1 MUTATED" "COL5A1 WILD-TYPE" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
  "COL5A1 MUTATED" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
"COL5A1 WILD-TYPE"   "COL5A1 MUTATED" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
"COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
      TCGA-US-A77J 
"COL5A1 WILD-TYPE" 
[1] "hr=" "1.2"
D369V2, continuous
                  vv
clus               STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  COL5A1 MUTATED          0        0         1         6         0        1
  COL5A1 WILD-TYPE        1        4        10        45         2        2
D369V3, multiclass
                  vv
clus               T1+T2 T3+T4
  COL5A1 MUTATED       0     8
  COL5A1 WILD-TYPE     6    58
D369V4, multiclass
       clus
vv      COL5A1 MUTATED COL5A1 WILD-TYPE
  T1+T2              0                6
  T3+T4              8               58
D369V5, binary
                  cls
clus                0  1
  COL5A1 MUTATED    2  6
  COL5A1 WILD-TYPE 15 48
[1] "tbl2"
                  cls
clus               [,1] [,2]
  COL5A1 MUTATED      2    6
  COL5A1 WILD-TYPE   15   48
   clus
vv  COL5A1 MUTATED COL5A1 WILD-TYPE
  0              2               15
  1              6               48
                  vv
clus               M0 M1 MX
  COL5A1 MUTATED    7  1  0
  COL5A1 WILD-TYPE 32  2 30
D369V6, multiclass
    clus
vv   COL5A1 MUTATED COL5A1 WILD-TYPE
  M0              7               32
  M1              1                2
  MX              0               30
D369V7, binary
                  cls
clus                0  1
  COL5A1 MUTATED    5  3
  COL5A1 WILD-TYPE 31 33
[1] "tbl2"
                  cls
clus               [,1] [,2]
  COL5A1 MUTATED      5    3
  COL5A1 WILD-TYPE   31   33
        clus
vv       COL5A1 MUTATED COL5A1 WILD-TYPE
  FEMALE              5               31
  MALE                3               33
                  vv
clus               PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  COL5A1 MUTATED                                     7
  COL5A1 WILD-TYPE                                  58
                  vv
clus               PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  COL5A1 MUTATED                                       0
  COL5A1 WILD-TYPE                                     4
                  vv
clus               PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  COL5A1 MUTATED                                                  0
  COL5A1 WILD-TYPE                                                2
D369V8, multiclass
                                                  clus
vv                                                 COL5A1 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                           7
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                         0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA              0
                                                  clus
vv                                                 COL5A1 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                            58
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                           4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                2
D369V9, continuous
[1] "Remove cluster labels:" "COL5A1 MUTATED"        
clus
  COL5A1 MUTATED COL5A1 WILD-TYPE 
               2               20 
      TCGA-F2-6880       TCGA-FB-A4P5       TCGA-FB-A4P6       TCGA-FB-A5VM 
"COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
      TCGA-FB-A78T       TCGA-FB-A7DR       TCGA-H6-8124       TCGA-H6-A45N 
"COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
      TCGA-H8-A6C1       TCGA-IB-7644       TCGA-IB-7649       TCGA-IB-7885 
"COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
      TCGA-IB-7887       TCGA-IB-7891       TCGA-IB-8126       TCGA-IB-8127 
"COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
      TCGA-IB-A5SS       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
D369V10, continuous
[1] "Remove cluster labels:" "COL5A1 MUTATED"        
clus
  COL5A1 MUTATED COL5A1 WILD-TYPE 
               2               17 
      TCGA-FB-A4P5       TCGA-FB-A4P6       TCGA-FB-A5VM       TCGA-FB-A78T 
"COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
      TCGA-FB-A7DR       TCGA-H6-8124       TCGA-H8-A6C1       TCGA-IB-7644 
"COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
      TCGA-IB-7649       TCGA-IB-7885       TCGA-IB-7891       TCGA-IB-8126 
"COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
      TCGA-IB-8127       TCGA-IB-A5SS       TCGA-IB-A6UG       TCGA-LB-A7SX 
"COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
      TCGA-OE-A75W 
"COL5A1 WILD-TYPE" 
                  vv
clus               R0 R1 RX
  COL5A1 MUTATED    4  3  0
  COL5A1 WILD-TYPE 38 21  2
D369V11, multiclass
    clus
vv   COL5A1 MUTATED COL5A1 WILD-TYPE
  R0              4               38
  R1              3               21
  RX              0                2
D369V12, continuous

Clustering(370) Variable = HIST1H1A MUTATION ANALYSIS
D370V1, survival
                    sevent
clus2                 0  1
  HIST1H1A MUTATED    2  2
  HIST1H1A WILD-TYPE 38 27
  HIST1H1A MUTATED HIST1H1A WILD-TYPE 
                 4                 65 
  HIST1H1A MUTATED HIST1H1A WILD-TYPE 
                 2                 27 
$`HIST1H1A MUTATED`
TCGA-H6-A45N TCGA-HZ-A49H TCGA-IB-7651 TCGA-IB-8126 
        7.66         0.95        19.82         0.56 

$`HIST1H1A WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P5 TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR 
        0.13        11.93        12.66         2.47         0.03         5.46 
TCGA-FZ-5920 TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 TCGA-H8-A6C1 TCGA-HZ-7289 
        2.01        36.20        20.81        12.89        13.02         7.89 
TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 
        0.92         0.66         0.13         0.26        12.13        11.87 
TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 
        0.26         0.62         0.79         0.69         3.95         0.92 
TCGA-HZ-8317 TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A4BH TCGA-HZ-A4BK 
        0.53         0.16         2.99         0.76         6.38         1.51 
TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7652 
       11.41        49.38         4.77        21.90        15.35        15.65 
TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 
       27.98         4.04         3.62        43.79        15.81        19.66 
TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP 
       16.04         3.85        15.98        17.16        10.82         9.86 
TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W 
        7.20        15.12         0.26         1.35         4.18         3.62 
TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
        8.12        13.68        16.80        14.14        18.67 

  HIST1H1A MUTATED HIST1H1A WILD-TYPE 
              0.56               0.03 
  HIST1H1A MUTATED HIST1H1A WILD-TYPE 
             19.82              49.38 
  HIST1H1A MUTATED HIST1H1A WILD-TYPE 
             4.305              7.890 
[1] "0.6 - 19.8 (4.3)" "0.0 - 49.4 (7.9)"
        TCGA-F2-6879         TCGA-F2-6880         TCGA-F2-7273 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-F2-7276         TCGA-F2-A44G         TCGA-F2-A44H 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-FB-A4P5         TCGA-FB-A4P6         TCGA-FB-A545 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-FB-A5VM         TCGA-FB-A78T         TCGA-FB-A7DR 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-FZ-5920         TCGA-FZ-5922         TCGA-FZ-5923 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-H6-8124         TCGA-H6-A45N         TCGA-H8-A6C1 
"HIST1H1A WILD-TYPE"   "HIST1H1A MUTATED" "HIST1H1A WILD-TYPE" 
        TCGA-HZ-7289         TCGA-HZ-7918         TCGA-HZ-7919 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-HZ-7922         TCGA-HZ-7923         TCGA-HZ-7924 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-HZ-7925         TCGA-HZ-7926         TCGA-HZ-8001 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-HZ-8002         TCGA-HZ-8003         TCGA-HZ-8005 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-HZ-8315         TCGA-HZ-8317         TCGA-HZ-8636 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-HZ-8638         TCGA-HZ-A49G         TCGA-HZ-A49H 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE"   "HIST1H1A MUTATED" 
        TCGA-HZ-A4BH         TCGA-HZ-A4BK         TCGA-IB-7644 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-IB-7645         TCGA-IB-7646         TCGA-IB-7647 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-IB-7649         TCGA-IB-7651         TCGA-IB-7652 
"HIST1H1A WILD-TYPE"   "HIST1H1A MUTATED" "HIST1H1A WILD-TYPE" 
        TCGA-IB-7885         TCGA-IB-7886         TCGA-IB-7887 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-IB-7888         TCGA-IB-7889         TCGA-IB-7890 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-IB-7891         TCGA-IB-7893         TCGA-IB-7897 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-IB-8126         TCGA-IB-8127         TCGA-IB-A5SO 
  "HIST1H1A MUTATED" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-IB-A5SP         TCGA-IB-A5SQ         TCGA-IB-A5SS 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-IB-A5ST         TCGA-IB-A6UG         TCGA-LB-A7SX 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-OE-A75W         TCGA-PZ-A5RE         TCGA-Q3-A5QY 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-US-A779         TCGA-US-A77E         TCGA-US-A77J 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-F2-6879         TCGA-F2-6880         TCGA-F2-7273 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-F2-7276         TCGA-F2-A44G         TCGA-F2-A44H 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-FB-A4P5         TCGA-FB-A4P6         TCGA-FB-A545 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-FB-A5VM         TCGA-FB-A78T         TCGA-FB-A7DR 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-FZ-5920         TCGA-FZ-5922         TCGA-FZ-5923 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-H6-8124         TCGA-H6-A45N         TCGA-H8-A6C1 
"HIST1H1A WILD-TYPE"   "HIST1H1A MUTATED" "HIST1H1A WILD-TYPE" 
        TCGA-HZ-7289         TCGA-HZ-7918         TCGA-HZ-7919 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-HZ-7922         TCGA-HZ-7923         TCGA-HZ-7924 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-HZ-7925         TCGA-HZ-7926         TCGA-HZ-8001 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-HZ-8002         TCGA-HZ-8003         TCGA-HZ-8005 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-HZ-8315         TCGA-HZ-8317         TCGA-HZ-8636 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-HZ-8638         TCGA-HZ-A49G         TCGA-HZ-A49H 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE"   "HIST1H1A MUTATED" 
        TCGA-HZ-A4BH         TCGA-HZ-A4BK         TCGA-IB-7644 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-IB-7645         TCGA-IB-7646         TCGA-IB-7647 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-IB-7649         TCGA-IB-7651         TCGA-IB-7652 
"HIST1H1A WILD-TYPE"   "HIST1H1A MUTATED" "HIST1H1A WILD-TYPE" 
        TCGA-IB-7885         TCGA-IB-7886         TCGA-IB-7887 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-IB-7888         TCGA-IB-7889         TCGA-IB-7890 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-IB-7891         TCGA-IB-7893         TCGA-IB-7897 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-IB-8126         TCGA-IB-8127         TCGA-IB-A5SO 
  "HIST1H1A MUTATED" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-IB-A5SP         TCGA-IB-A5SQ         TCGA-IB-A5SS 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-IB-A5ST         TCGA-IB-A6UG         TCGA-LB-A7SX 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-OE-A75W         TCGA-PZ-A5RE         TCGA-Q3-A5QY 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-US-A779         TCGA-US-A77E         TCGA-US-A77J 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-F2-6879         TCGA-F2-6880         TCGA-F2-7273 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-F2-7276         TCGA-F2-A44G         TCGA-F2-A44H 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-FB-A4P5         TCGA-FB-A4P6         TCGA-FB-A545 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-FB-A5VM         TCGA-FB-A78T         TCGA-FB-A7DR 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-FZ-5920         TCGA-FZ-5922         TCGA-FZ-5923 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-H6-8124         TCGA-H6-A45N         TCGA-H8-A6C1 
"HIST1H1A WILD-TYPE"   "HIST1H1A MUTATED" "HIST1H1A WILD-TYPE" 
        TCGA-HZ-7289         TCGA-HZ-7918         TCGA-HZ-7919 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-HZ-7922         TCGA-HZ-7923         TCGA-HZ-7924 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-HZ-7925         TCGA-HZ-7926         TCGA-HZ-8001 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-HZ-8002         TCGA-HZ-8003         TCGA-HZ-8005 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-HZ-8315         TCGA-HZ-8317         TCGA-HZ-8636 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-HZ-8638         TCGA-HZ-A49G         TCGA-HZ-A49H 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE"   "HIST1H1A MUTATED" 
        TCGA-HZ-A4BH         TCGA-HZ-A4BK         TCGA-IB-7644 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-IB-7645         TCGA-IB-7646         TCGA-IB-7647 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-IB-7649         TCGA-IB-7651         TCGA-IB-7652 
"HIST1H1A WILD-TYPE"   "HIST1H1A MUTATED" "HIST1H1A WILD-TYPE" 
        TCGA-IB-7885         TCGA-IB-7886         TCGA-IB-7887 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-IB-7888         TCGA-IB-7889         TCGA-IB-7890 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-IB-7891         TCGA-IB-7893         TCGA-IB-7897 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-IB-8126         TCGA-IB-8127         TCGA-IB-A5SO 
  "HIST1H1A MUTATED" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-IB-A5SP         TCGA-IB-A5SQ         TCGA-IB-A5SS 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-IB-A5ST         TCGA-IB-A6UG         TCGA-LB-A7SX 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-OE-A75W         TCGA-PZ-A5RE         TCGA-Q3-A5QY 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-US-A779         TCGA-US-A77E         TCGA-US-A77J 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
[1] "hr=" "1.4"
D370V2, continuous
                    vv
clus                 STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  HIST1H1A MUTATED          0        0         0         3         1        0
  HIST1H1A WILD-TYPE        1        4        11        48         1        3
D370V3, multiclass
                    vv
clus                 T1+T2 T3+T4
  HIST1H1A MUTATED       0     4
  HIST1H1A WILD-TYPE     6    62
D370V4, multiclass
       clus
vv      HIST1H1A MUTATED HIST1H1A WILD-TYPE
  T1+T2                0                  6
  T3+T4                4                 62
D370V5, binary
                    cls
clus                  0  1
  HIST1H1A MUTATED    0  4
  HIST1H1A WILD-TYPE 17 50
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  HIST1H1A MUTATED      0    4
  HIST1H1A WILD-TYPE   17   50
   clus
vv  HIST1H1A MUTATED HIST1H1A WILD-TYPE
  0                0                 17
  1                4                 50
                    vv
clus                 M0 M1 MX
  HIST1H1A MUTATED    2  0  2
  HIST1H1A WILD-TYPE 37  3 28
D370V6, multiclass
    clus
vv   HIST1H1A MUTATED HIST1H1A WILD-TYPE
  M0                2                 37
  M1                0                  3
  MX                2                 28
D370V7, binary
                    cls
clus                  0  1
  HIST1H1A MUTATED    4  0
  HIST1H1A WILD-TYPE 32 36
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  HIST1H1A MUTATED      4    0
  HIST1H1A WILD-TYPE   32   36
        clus
vv       HIST1H1A MUTATED HIST1H1A WILD-TYPE
  FEMALE                4                 32
  MALE                  0                 36
                    vv
clus                 PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  HIST1H1A MUTATED                                     3
  HIST1H1A WILD-TYPE                                  62
                    vv
clus                 PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  HIST1H1A MUTATED                                       1
  HIST1H1A WILD-TYPE                                     3
                    vv
clus                 PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  HIST1H1A MUTATED                                                  0
  HIST1H1A WILD-TYPE                                                2
D370V8, multiclass
                                                  clus
vv                                                 HIST1H1A MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                             3
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                           1
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                0
                                                  clus
vv                                                 HIST1H1A WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                              62
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                             3
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                  2
D370V9, continuous
D370V10, continuous
[1] "Remove cluster labels:" "HIST1H1A MUTATED"      
clus
  HIST1H1A MUTATED HIST1H1A WILD-TYPE 
                 2                 17 
        TCGA-FB-A4P5         TCGA-FB-A4P6         TCGA-FB-A5VM 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-FB-A78T         TCGA-FB-A7DR         TCGA-H6-8124 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-H8-A6C1         TCGA-IB-7644         TCGA-IB-7649 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-IB-7885         TCGA-IB-7886         TCGA-IB-7891 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-IB-8127         TCGA-IB-A5SS         TCGA-IB-A6UG 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
        TCGA-LB-A7SX         TCGA-OE-A75W 
"HIST1H1A WILD-TYPE" "HIST1H1A WILD-TYPE" 
                    vv
clus                 R0 R1 RX
  HIST1H1A MUTATED    2  1  0
  HIST1H1A WILD-TYPE 40 23  2
D370V11, multiclass
    clus
vv   HIST1H1A MUTATED HIST1H1A WILD-TYPE
  R0                2                 40
  R1                1                 23
  RX                0                  2
D370V12, continuous

Clustering(371) Variable = WHSC1L1 MUTATION ANALYSIS
D371V1, survival
                   sevent
clus2                0  1
  WHSC1L1 MUTATED    3  1
  WHSC1L1 WILD-TYPE 37 28
  WHSC1L1 MUTATED WHSC1L1 WILD-TYPE 
                4                65 
  WHSC1L1 MUTATED WHSC1L1 WILD-TYPE 
                1                28 
$`WHSC1L1 MUTATED`
TCGA-HZ-8638 TCGA-IB-7652 TCGA-IB-7889 TCGA-IB-8126 
        2.99        15.65        15.81         0.56 

$`WHSC1L1 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P5 TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR 
        0.13        11.93        12.66         2.47         0.03         5.46 
TCGA-FZ-5920 TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 
        2.01        36.20        20.81        12.89         7.66        13.02 
TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 
        7.89         0.92         0.66         0.13         0.26        12.13 
TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 
       11.87         0.26         0.62         0.79         0.69         3.95 
TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8636 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH 
        0.92         0.53         0.16         0.76         0.95         6.38 
TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 
        1.51        11.41        49.38         4.77        21.90        15.35 
TCGA-IB-7651 TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7890 
       19.82        27.98         4.04         3.62        43.79        19.66 
TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP 
       16.04         3.85        15.98        17.16        10.82         9.86 
TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W 
        7.20        15.12         0.26         1.35         4.18         3.62 
TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
        8.12        13.68        16.80        14.14        18.67 

  WHSC1L1 MUTATED WHSC1L1 WILD-TYPE 
             0.56              0.03 
  WHSC1L1 MUTATED WHSC1L1 WILD-TYPE 
            15.81             49.38 
  WHSC1L1 MUTATED WHSC1L1 WILD-TYPE 
             9.32              7.66 
[1] "0.6 - 15.8 (9.3)" "0.0 - 49.4 (7.7)"
       TCGA-F2-6879        TCGA-F2-6880        TCGA-F2-7273        TCGA-F2-7276 
"WHSC1L1 WILD-TYPE" "WHSC1L1 WILD-TYPE" "WHSC1L1 WILD-TYPE" "WHSC1L1 WILD-TYPE" 
       TCGA-F2-A44G        TCGA-F2-A44H        TCGA-FB-A4P5        TCGA-FB-A4P6 
"WHSC1L1 WILD-TYPE" "WHSC1L1 WILD-TYPE" "WHSC1L1 WILD-TYPE" "WHSC1L1 WILD-TYPE" 
       TCGA-FB-A545        TCGA-FB-A5VM        TCGA-FB-A78T        TCGA-FB-A7DR 
"WHSC1L1 WILD-TYPE" "WHSC1L1 WILD-TYPE" "WHSC1L1 WILD-TYPE" "WHSC1L1 WILD-TYPE" 
       TCGA-FZ-5920        TCGA-FZ-5922        TCGA-FZ-5923        TCGA-H6-8124 
"WHSC1L1 WILD-TYPE" "WHSC1L1 WILD-TYPE" "WHSC1L1 WILD-TYPE" "WHSC1L1 WILD-TYPE" 
       TCGA-H6-A45N        TCGA-H8-A6C1        TCGA-HZ-7289        TCGA-HZ-7918 
"WHSC1L1 WILD-TYPE" "WHSC1L1 WILD-TYPE" "WHSC1L1 WILD-TYPE" "WHSC1L1 WILD-TYPE" 
       TCGA-HZ-7919        TCGA-HZ-7922        TCGA-HZ-7923        TCGA-HZ-7924 
"WHSC1L1 WILD-TYPE" "WHSC1L1 WILD-TYPE" "WHSC1L1 WILD-TYPE" "WHSC1L1 WILD-TYPE" 
       TCGA-HZ-7925        TCGA-HZ-7926        TCGA-HZ-8001        TCGA-HZ-8002 
"WHSC1L1 WILD-TYPE" "WHSC1L1 WILD-TYPE" "WHSC1L1 WILD-TYPE" "WHSC1L1 WILD-TYPE" 
       TCGA-HZ-8003        TCGA-HZ-8005        TCGA-HZ-8315        TCGA-HZ-8317 
"WHSC1L1 WILD-TYPE" "WHSC1L1 WILD-TYPE" "WHSC1L1 WILD-TYPE" "WHSC1L1 WILD-TYPE" 
       TCGA-HZ-8636        TCGA-HZ-8638        TCGA-HZ-A49G        TCGA-HZ-A49H 
"WHSC1L1 WILD-TYPE"   "WHSC1L1 MUTATED" "WHSC1L1 WILD-TYPE" "WHSC1L1 WILD-TYPE" 
       TCGA-HZ-A4BH        TCGA-HZ-A4BK        TCGA-IB-7644        TCGA-IB-7645 
"WHSC1L1 WILD-TYPE" "WHSC1L1 WILD-TYPE" "WHSC1L1 WILD-TYPE" "WHSC1L1 WILD-TYPE" 
       TCGA-IB-7646        TCGA-IB-7647        TCGA-IB-7649        TCGA-IB-7651 
"WHSC1L1 WILD-TYPE" "WHSC1L1 WILD-TYPE" "WHSC1L1 WILD-TYPE" "WHSC1L1 WILD-TYPE" 
       TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-7886        TCGA-IB-7887 
  "WHSC1L1 MUTATED" "WHSC1L1 WILD-TYPE" "WHSC1L1 WILD-TYPE" "WHSC1L1 WILD-TYPE" 
       TCGA-IB-7888        TCGA-IB-7889        TCGA-IB-7890        TCGA-IB-7891 
"WHSC1L1 WILD-TYPE"   "WHSC1L1 MUTATED" "WHSC1L1 WILD-TYPE" "WHSC1L1 WILD-TYPE" 
       TCGA-IB-7893        TCGA-IB-7897        TCGA-IB-8126        TCGA-IB-8127 
"WHSC1L1 WILD-TYPE" "WHSC1L1 WILD-TYPE"   "WHSC1L1 MUTATED" "WHSC1L1 WILD-TYPE" 
       TCGA-IB-A5SO        TCGA-IB-A5SP        TCGA-IB-A5SQ        TCGA-IB-A5SS 
"WHSC1L1 WILD-TYPE" "WHSC1L1 WILD-TYPE" "WHSC1L1 WILD-TYPE" "WHSC1L1 WILD-TYPE" 
       TCGA-IB-A5ST        TCGA-IB-A6UG        TCGA-LB-A7SX        TCGA-OE-A75W 
"WHSC1L1 WILD-TYPE" "WHSC1L1 WILD-TYPE" "WHSC1L1 WILD-TYPE" "WHSC1L1 WILD-TYPE" 
       TCGA-PZ-A5RE        TCGA-Q3-A5QY        TCGA-US-A779        TCGA-US-A77E 
"WHSC1L1 WILD-TYPE" "WHSC1L1 WILD-TYPE" "WHSC1L1 WILD-TYPE" "WHSC1L1 WILD-TYPE" 
       TCGA-US-A77J 
"WHSC1L1 WILD-TYPE" 
       TCGA-F2-6879        TCGA-F2-6880        TCGA-F2-7273        TCGA-F2-7276 
"WHSC1L1 WILD-TYPE" "WHSC1L1 WILD-TYPE" "WHSC1L1 WILD-TYPE" "WHSC1L1 WILD-TYPE" 
       TCGA-F2-A44G        TCGA-F2-A44H        TCGA-FB-A4P5        TCGA-FB-A4P6 
"WHSC1L1 WILD-TYPE" "WHSC1L1 WILD-TYPE" "WHSC1L1 WILD-TYPE" "WHSC1L1 WILD-TYPE" 
       TCGA-FB-A545        TCGA-FB-A5VM        TCGA-FB-A78T        TCGA-FB-A7DR 
"WHSC1L1 WILD-TYPE" "WHSC1L1 WILD-TYPE" "WHSC1L1 WILD-TYPE" "WHSC1L1 WILD-TYPE" 
       TCGA-FZ-5920        TCGA-FZ-5922        TCGA-FZ-5923        TCGA-H6-8124 
"WHSC1L1 WILD-TYPE" "WHSC1L1 WILD-TYPE" "WHSC1L1 WILD-TYPE" "WHSC1L1 WILD-TYPE" 
       TCGA-H6-A45N        TCGA-H8-A6C1        TCGA-HZ-7289        TCGA-HZ-7918 
"WHSC1L1 WILD-TYPE" "WHSC1L1 WILD-TYPE" "WHSC1L1 WILD-TYPE" "WHSC1L1 WILD-TYPE" 
       TCGA-HZ-7919        TCGA-HZ-7922        TCGA-HZ-7923        TCGA-HZ-7924 
"WHSC1L1 WILD-TYPE" "WHSC1L1 WILD-TYPE" "WHSC1L1 WILD-TYPE" "WHSC1L1 WILD-TYPE" 
       TCGA-HZ-7925        TCGA-HZ-7926        TCGA-HZ-8001        TCGA-HZ-8002 
"WHSC1L1 WILD-TYPE" "WHSC1L1 WILD-TYPE" "WHSC1L1 WILD-TYPE" "WHSC1L1 WILD-TYPE" 
       TCGA-HZ-8003        TCGA-HZ-8005        TCGA-HZ-8315        TCGA-HZ-8317 
"WHSC1L1 WILD-TYPE" "WHSC1L1 WILD-TYPE" "WHSC1L1 WILD-TYPE" "WHSC1L1 WILD-TYPE" 
       TCGA-HZ-8636        TCGA-HZ-8638        TCGA-HZ-A49G        TCGA-HZ-A49H 
"WHSC1L1 WILD-TYPE"   "WHSC1L1 MUTATED" "WHSC1L1 WILD-TYPE" "WHSC1L1 WILD-TYPE" 
       TCGA-HZ-A4BH        TCGA-HZ-A4BK        TCGA-IB-7644        TCGA-IB-7645 
"WHSC1L1 WILD-TYPE" "WHSC1L1 WILD-TYPE" "WHSC1L1 WILD-TYPE" "WHSC1L1 WILD-TYPE" 
       TCGA-IB-7646        TCGA-IB-7647        TCGA-IB-7649        TCGA-IB-7651 
"WHSC1L1 WILD-TYPE" "WHSC1L1 WILD-TYPE" "WHSC1L1 WILD-TYPE" "WHSC1L1 WILD-TYPE" 
       TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-7886        TCGA-IB-7887 
  "WHSC1L1 MUTATED" "WHSC1L1 WILD-TYPE" "WHSC1L1 WILD-TYPE" "WHSC1L1 WILD-TYPE" 
       TCGA-IB-7888        TCGA-IB-7889        TCGA-IB-7890        TCGA-IB-7891 
"WHSC1L1 WILD-TYPE"   "WHSC1L1 MUTATED" "WHSC1L1 WILD-TYPE" "WHSC1L1 WILD-TYPE" 
       TCGA-IB-7893        TCGA-IB-7897        TCGA-IB-8126        TCGA-IB-8127 
"WHSC1L1 WILD-TYPE" "WHSC1L1 WILD-TYPE"   "WHSC1L1 MUTATED" "WHSC1L1 WILD-TYPE" 
       TCGA-IB-A5SO        TCGA-IB-A5SP        TCGA-IB-A5SQ        TCGA-IB-A5SS 
"WHSC1L1 WILD-TYPE" "WHSC1L1 WILD-TYPE" "WHSC1L1 WILD-TYPE" "WHSC1L1 WILD-TYPE" 
       TCGA-IB-A5ST        TCGA-IB-A6UG        TCGA-LB-A7SX        TCGA-OE-A75W 
"WHSC1L1 WILD-TYPE" "WHSC1L1 WILD-TYPE" "WHSC1L1 WILD-TYPE" "WHSC1L1 WILD-TYPE" 
       TCGA-PZ-A5RE        TCGA-Q3-A5QY        TCGA-US-A779        TCGA-US-A77E 
"WHSC1L1 WILD-TYPE" "WHSC1L1 WILD-TYPE" "WHSC1L1 WILD-TYPE" "WHSC1L1 WILD-TYPE" 
       TCGA-US-A77J 
"WHSC1L1 WILD-TYPE" 
       TCGA-F2-6879        TCGA-F2-6880        TCGA-F2-7273        TCGA-F2-7276 
"WHSC1L1 WILD-TYPE" "WHSC1L1 WILD-TYPE" "WHSC1L1 WILD-TYPE" "WHSC1L1 WILD-TYPE" 
       TCGA-F2-A44G        TCGA-F2-A44H        TCGA-FB-A4P5        TCGA-FB-A4P6 
"WHSC1L1 WILD-TYPE" "WHSC1L1 WILD-TYPE" "WHSC1L1 WILD-TYPE" "WHSC1L1 WILD-TYPE" 
       TCGA-FB-A545        TCGA-FB-A5VM        TCGA-FB-A78T        TCGA-FB-A7DR 
"WHSC1L1 WILD-TYPE" "WHSC1L1 WILD-TYPE" "WHSC1L1 WILD-TYPE" "WHSC1L1 WILD-TYPE" 
       TCGA-FZ-5920        TCGA-FZ-5922        TCGA-FZ-5923        TCGA-H6-8124 
"WHSC1L1 WILD-TYPE" "WHSC1L1 WILD-TYPE" "WHSC1L1 WILD-TYPE" "WHSC1L1 WILD-TYPE" 
       TCGA-H6-A45N        TCGA-H8-A6C1        TCGA-HZ-7289        TCGA-HZ-7918 
"WHSC1L1 WILD-TYPE" "WHSC1L1 WILD-TYPE" "WHSC1L1 WILD-TYPE" "WHSC1L1 WILD-TYPE" 
       TCGA-HZ-7919        TCGA-HZ-7922        TCGA-HZ-7923        TCGA-HZ-7924 
"WHSC1L1 WILD-TYPE" "WHSC1L1 WILD-TYPE" "WHSC1L1 WILD-TYPE" "WHSC1L1 WILD-TYPE" 
       TCGA-HZ-7925        TCGA-HZ-7926        TCGA-HZ-8001        TCGA-HZ-8002 
"WHSC1L1 WILD-TYPE" "WHSC1L1 WILD-TYPE" "WHSC1L1 WILD-TYPE" "WHSC1L1 WILD-TYPE" 
       TCGA-HZ-8003        TCGA-HZ-8005        TCGA-HZ-8315        TCGA-HZ-8317 
"WHSC1L1 WILD-TYPE" "WHSC1L1 WILD-TYPE" "WHSC1L1 WILD-TYPE" "WHSC1L1 WILD-TYPE" 
       TCGA-HZ-8636        TCGA-HZ-8638        TCGA-HZ-A49G        TCGA-HZ-A49H 
"WHSC1L1 WILD-TYPE"   "WHSC1L1 MUTATED" "WHSC1L1 WILD-TYPE" "WHSC1L1 WILD-TYPE" 
       TCGA-HZ-A4BH        TCGA-HZ-A4BK        TCGA-IB-7644        TCGA-IB-7645 
"WHSC1L1 WILD-TYPE" "WHSC1L1 WILD-TYPE" "WHSC1L1 WILD-TYPE" "WHSC1L1 WILD-TYPE" 
       TCGA-IB-7646        TCGA-IB-7647        TCGA-IB-7649        TCGA-IB-7651 
"WHSC1L1 WILD-TYPE" "WHSC1L1 WILD-TYPE" "WHSC1L1 WILD-TYPE" "WHSC1L1 WILD-TYPE" 
       TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-7886        TCGA-IB-7887 
  "WHSC1L1 MUTATED" "WHSC1L1 WILD-TYPE" "WHSC1L1 WILD-TYPE" "WHSC1L1 WILD-TYPE" 
       TCGA-IB-7888        TCGA-IB-7889        TCGA-IB-7890        TCGA-IB-7891 
"WHSC1L1 WILD-TYPE"   "WHSC1L1 MUTATED" "WHSC1L1 WILD-TYPE" "WHSC1L1 WILD-TYPE" 
       TCGA-IB-7893        TCGA-IB-7897        TCGA-IB-8126        TCGA-IB-8127 
"WHSC1L1 WILD-TYPE" "WHSC1L1 WILD-TYPE"   "WHSC1L1 MUTATED" "WHSC1L1 WILD-TYPE" 
       TCGA-IB-A5SO        TCGA-IB-A5SP        TCGA-IB-A5SQ        TCGA-IB-A5SS 
"WHSC1L1 WILD-TYPE" "WHSC1L1 WILD-TYPE" "WHSC1L1 WILD-TYPE" "WHSC1L1 WILD-TYPE" 
       TCGA-IB-A5ST        TCGA-IB-A6UG        TCGA-LB-A7SX        TCGA-OE-A75W 
"WHSC1L1 WILD-TYPE" "WHSC1L1 WILD-TYPE" "WHSC1L1 WILD-TYPE" "WHSC1L1 WILD-TYPE" 
       TCGA-PZ-A5RE        TCGA-Q3-A5QY        TCGA-US-A779        TCGA-US-A77E 
"WHSC1L1 WILD-TYPE" "WHSC1L1 WILD-TYPE" "WHSC1L1 WILD-TYPE" "WHSC1L1 WILD-TYPE" 
       TCGA-US-A77J 
"WHSC1L1 WILD-TYPE" 
[1] "hr=" "1.3"
D371V2, continuous
                   vv
clus                STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  WHSC1L1 MUTATED          1        0         0         3         1        0
  WHSC1L1 WILD-TYPE        0        4        11        48         1        3
D371V3, multiclass
                   vv
clus                T1+T2 T3+T4
  WHSC1L1 MUTATED       1     4
  WHSC1L1 WILD-TYPE     5    62
D371V4, multiclass
       clus
vv      WHSC1L1 MUTATED WHSC1L1 WILD-TYPE
  T1+T2               1                 5
  T3+T4               4                62
D371V5, binary
                   cls
clus                 0  1
  WHSC1L1 MUTATED    1  4
  WHSC1L1 WILD-TYPE 16 50
[1] "tbl2"
                   cls
clus                [,1] [,2]
  WHSC1L1 MUTATED      1    4
  WHSC1L1 WILD-TYPE   16   50
   clus
vv  WHSC1L1 MUTATED WHSC1L1 WILD-TYPE
  0               1                16
  1               4                50
                   vv
clus                M0 M1 MX
  WHSC1L1 MUTATED    3  0  2
  WHSC1L1 WILD-TYPE 36  3 28
D371V6, multiclass
    clus
vv   WHSC1L1 MUTATED WHSC1L1 WILD-TYPE
  M0               3                36
  M1               0                 3
  MX               2                28
D371V7, binary
                   cls
clus                 0  1
  WHSC1L1 MUTATED    4  1
  WHSC1L1 WILD-TYPE 32 35
[1] "tbl2"
                   cls
clus                [,1] [,2]
  WHSC1L1 MUTATED      4    1
  WHSC1L1 WILD-TYPE   32   35
        clus
vv       WHSC1L1 MUTATED WHSC1L1 WILD-TYPE
  FEMALE               4                32
  MALE                 1                35
                   vv
clus                PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  WHSC1L1 MUTATED                                     4
  WHSC1L1 WILD-TYPE                                  61
                   vv
clus                PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  WHSC1L1 MUTATED                                       0
  WHSC1L1 WILD-TYPE                                     4
                   vv
clus                PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  WHSC1L1 MUTATED                                                  1
  WHSC1L1 WILD-TYPE                                                1
D371V8, multiclass
                                                  clus
vv                                                 WHSC1L1 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                            4
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                          0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA               1
                                                  clus
vv                                                 WHSC1L1 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                             61
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                            4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                 1
D371V9, continuous
[1] "Remove cluster labels:" "WHSC1L1 MUTATED"       
clus
  WHSC1L1 MUTATED WHSC1L1 WILD-TYPE 
                1                21 
       TCGA-F2-6880        TCGA-FB-A4P5        TCGA-FB-A4P6        TCGA-FB-A5VM 
"WHSC1L1 WILD-TYPE" "WHSC1L1 WILD-TYPE" "WHSC1L1 WILD-TYPE" "WHSC1L1 WILD-TYPE" 
       TCGA-FB-A78T        TCGA-FB-A7DR        TCGA-H6-8124        TCGA-H6-A45N 
"WHSC1L1 WILD-TYPE" "WHSC1L1 WILD-TYPE" "WHSC1L1 WILD-TYPE" "WHSC1L1 WILD-TYPE" 
       TCGA-H8-A6C1        TCGA-IB-7644        TCGA-IB-7649        TCGA-IB-7651 
"WHSC1L1 WILD-TYPE" "WHSC1L1 WILD-TYPE" "WHSC1L1 WILD-TYPE" "WHSC1L1 WILD-TYPE" 
       TCGA-IB-7885        TCGA-IB-7886        TCGA-IB-7887        TCGA-IB-7891 
"WHSC1L1 WILD-TYPE" "WHSC1L1 WILD-TYPE" "WHSC1L1 WILD-TYPE" "WHSC1L1 WILD-TYPE" 
       TCGA-IB-8127        TCGA-IB-A5SS        TCGA-IB-A6UG        TCGA-LB-A7SX 
"WHSC1L1 WILD-TYPE" "WHSC1L1 WILD-TYPE" "WHSC1L1 WILD-TYPE" "WHSC1L1 WILD-TYPE" 
       TCGA-OE-A75W 
"WHSC1L1 WILD-TYPE" 
D371V10, continuous
[1] "Remove cluster labels:" "WHSC1L1 MUTATED"       
clus
  WHSC1L1 MUTATED WHSC1L1 WILD-TYPE 
                1                18 
       TCGA-FB-A4P5        TCGA-FB-A4P6        TCGA-FB-A5VM        TCGA-FB-A78T 
"WHSC1L1 WILD-TYPE" "WHSC1L1 WILD-TYPE" "WHSC1L1 WILD-TYPE" "WHSC1L1 WILD-TYPE" 
       TCGA-FB-A7DR        TCGA-H6-8124        TCGA-H8-A6C1        TCGA-IB-7644 
"WHSC1L1 WILD-TYPE" "WHSC1L1 WILD-TYPE" "WHSC1L1 WILD-TYPE" "WHSC1L1 WILD-TYPE" 
       TCGA-IB-7649        TCGA-IB-7651        TCGA-IB-7885        TCGA-IB-7886 
"WHSC1L1 WILD-TYPE" "WHSC1L1 WILD-TYPE" "WHSC1L1 WILD-TYPE" "WHSC1L1 WILD-TYPE" 
       TCGA-IB-7891        TCGA-IB-8127        TCGA-IB-A5SS        TCGA-IB-A6UG 
"WHSC1L1 WILD-TYPE" "WHSC1L1 WILD-TYPE" "WHSC1L1 WILD-TYPE" "WHSC1L1 WILD-TYPE" 
       TCGA-LB-A7SX        TCGA-OE-A75W 
"WHSC1L1 WILD-TYPE" "WHSC1L1 WILD-TYPE" 
                   vv
clus                R0 R1 RX
  WHSC1L1 MUTATED    2  3  0
  WHSC1L1 WILD-TYPE 40 21  2
D371V11, multiclass
    clus
vv   WHSC1L1 MUTATED WHSC1L1 WILD-TYPE
  R0               2                40
  R1               3                21
  RX               0                 2
D371V12, continuous

Clustering(372) Variable = MTFMT MUTATION ANALYSIS
D372V1, survival
                 sevent
clus2              0  1
  MTFMT MUTATED    2  1
  MTFMT WILD-TYPE 38 28
  MTFMT MUTATED MTFMT WILD-TYPE 
              3              66 
  MTFMT MUTATED MTFMT WILD-TYPE 
              1              28 
$`MTFMT MUTATED`
TCGA-HZ-7926 TCGA-HZ-8315 TCGA-IB-7889 
        0.26         0.92        15.81 

$`MTFMT WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P5 TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR 
        0.13        11.93        12.66         2.47         0.03         5.46 
TCGA-FZ-5920 TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 
        2.01        36.20        20.81        12.89         7.66        13.02 
TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 
        7.89         0.92         0.66         0.13         0.26        12.13 
TCGA-HZ-7925 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8317 
       11.87         0.62         0.79         0.69         3.95         0.53 
TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK 
        0.16         2.99         0.76         0.95         6.38         1.51 
TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7651 
       11.41        49.38         4.77        21.90        15.35        19.82 
TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7890 
       15.65        27.98         4.04         3.62        43.79        19.66 
TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO 
       16.04         3.85        15.98         0.56        17.16        10.82 
TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX 
        9.86         7.20        15.12         0.26         1.35         4.18 
TCGA-OE-A75W TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
        3.62         8.12        13.68        16.80        14.14        18.67 

  MTFMT MUTATED MTFMT WILD-TYPE 
           0.26            0.03 
  MTFMT MUTATED MTFMT WILD-TYPE 
          15.81           49.38 
  MTFMT MUTATED MTFMT WILD-TYPE 
          0.920           7.775 
[1] "0.3 - 15.8 (0.9)" "0.0 - 49.4 (7.8)"
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"MTFMT WILD-TYPE" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"MTFMT WILD-TYPE" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"MTFMT WILD-TYPE" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"MTFMT WILD-TYPE" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"MTFMT WILD-TYPE" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"MTFMT WILD-TYPE" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"MTFMT WILD-TYPE"   "MTFMT MUTATED" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"MTFMT WILD-TYPE" "MTFMT WILD-TYPE"   "MTFMT MUTATED" "MTFMT WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"MTFMT WILD-TYPE" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"MTFMT WILD-TYPE" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"MTFMT WILD-TYPE" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"MTFMT WILD-TYPE" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"MTFMT WILD-TYPE"   "MTFMT MUTATED" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"MTFMT WILD-TYPE" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"MTFMT WILD-TYPE" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"MTFMT WILD-TYPE" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"MTFMT WILD-TYPE" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" 
     TCGA-US-A77J 
"MTFMT WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"MTFMT WILD-TYPE" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"MTFMT WILD-TYPE" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"MTFMT WILD-TYPE" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"MTFMT WILD-TYPE" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"MTFMT WILD-TYPE" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"MTFMT WILD-TYPE" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"MTFMT WILD-TYPE"   "MTFMT MUTATED" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"MTFMT WILD-TYPE" "MTFMT WILD-TYPE"   "MTFMT MUTATED" "MTFMT WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"MTFMT WILD-TYPE" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"MTFMT WILD-TYPE" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"MTFMT WILD-TYPE" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"MTFMT WILD-TYPE" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"MTFMT WILD-TYPE"   "MTFMT MUTATED" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"MTFMT WILD-TYPE" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"MTFMT WILD-TYPE" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"MTFMT WILD-TYPE" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"MTFMT WILD-TYPE" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" 
     TCGA-US-A77J 
"MTFMT WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"MTFMT WILD-TYPE" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"MTFMT WILD-TYPE" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"MTFMT WILD-TYPE" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"MTFMT WILD-TYPE" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"MTFMT WILD-TYPE" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"MTFMT WILD-TYPE" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"MTFMT WILD-TYPE"   "MTFMT MUTATED" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"MTFMT WILD-TYPE" "MTFMT WILD-TYPE"   "MTFMT MUTATED" "MTFMT WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"MTFMT WILD-TYPE" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"MTFMT WILD-TYPE" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"MTFMT WILD-TYPE" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"MTFMT WILD-TYPE" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"MTFMT WILD-TYPE"   "MTFMT MUTATED" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"MTFMT WILD-TYPE" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"MTFMT WILD-TYPE" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"MTFMT WILD-TYPE" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"MTFMT WILD-TYPE" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" 
     TCGA-US-A77J 
"MTFMT WILD-TYPE" 
[1] "hr=" "1.6"
D372V2, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  MTFMT MUTATED          0        0         1         2         0        0
  MTFMT WILD-TYPE        1        4        10        49         2        3
D372V3, multiclass
                 vv
clus              T1+T2 T3+T4
  MTFMT MUTATED       0     3
  MTFMT WILD-TYPE     6    63
D372V4, multiclass
       clus
vv      MTFMT MUTATED MTFMT WILD-TYPE
  T1+T2             0               6
  T3+T4             3              63
D372V5, binary
                 cls
clus               0  1
  MTFMT MUTATED    1  2
  MTFMT WILD-TYPE 16 52
[1] "tbl2"
                 cls
clus              [,1] [,2]
  MTFMT MUTATED      1    2
  MTFMT WILD-TYPE   16   52
   clus
vv  MTFMT MUTATED MTFMT WILD-TYPE
  0             1              16
  1             2              52
                 vv
clus              M0 M1 MX
  MTFMT MUTATED    1  0  2
  MTFMT WILD-TYPE 38  3 28
D372V6, multiclass
    clus
vv   MTFMT MUTATED MTFMT WILD-TYPE
  M0             1              38
  M1             0               3
  MX             2              28
D372V7, binary
                 cls
clus               0  1
  MTFMT MUTATED    2  1
  MTFMT WILD-TYPE 34 35
[1] "tbl2"
                 cls
clus              [,1] [,2]
  MTFMT MUTATED      2    1
  MTFMT WILD-TYPE   34   35
        clus
vv       MTFMT MUTATED MTFMT WILD-TYPE
  FEMALE             2              34
  MALE               1              35
                 vv
clus              PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  MTFMT MUTATED                                     3
  MTFMT WILD-TYPE                                  62
                 vv
clus              PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  MTFMT MUTATED                                       0
  MTFMT WILD-TYPE                                     4
                 vv
clus              PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  MTFMT MUTATED                                                  0
  MTFMT WILD-TYPE                                                2
D372V8, multiclass
                                                  clus
vv                                                 MTFMT MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                          3
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                        0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA             0
                                                  clus
vv                                                 MTFMT WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                           62
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                          4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA               2
D372V9, continuous
D372V10, continuous
                 vv
clus              R0 R1 RX
  MTFMT MUTATED    1  1  1
  MTFMT WILD-TYPE 41 23  1
D372V11, multiclass
    clus
vv   MTFMT MUTATED MTFMT WILD-TYPE
  R0             1              41
  R1             1              23
  RX             1               1
D372V12, continuous

Clustering(373) Variable = KIAA2018 MUTATION ANALYSIS
D373V1, survival
                    sevent
clus2                 0  1
  KIAA2018 MUTATED    3  2
  KIAA2018 WILD-TYPE 37 27
  KIAA2018 MUTATED KIAA2018 WILD-TYPE 
                 5                 64 
  KIAA2018 MUTATED KIAA2018 WILD-TYPE 
                 2                 27 
$`KIAA2018 MUTATED`
TCGA-H6-8124 TCGA-HZ-7925 TCGA-HZ-A4BH TCGA-IB-7651 TCGA-IB-7893 
       12.89        11.87         6.38        19.82         3.85 

$`KIAA2018 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P5 TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR 
        0.13        11.93        12.66         2.47         0.03         5.46 
TCGA-FZ-5920 TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7289 
        2.01        36.20        20.81         7.66        13.02         7.89 
TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7926 
        0.92         0.66         0.13         0.26        12.13         0.26 
TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 
        0.62         0.79         0.69         3.95         0.92         0.53 
TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BK TCGA-IB-7644 
        0.16         2.99         0.76         0.95         1.51        11.41 
TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7652 TCGA-IB-7885 
       49.38         4.77        21.90        15.35        15.65        27.98 
TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 
        4.04         3.62        43.79        15.81        19.66        16.04 
TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ 
       15.98         0.56        17.16        10.82         9.86         7.20 
TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W TCGA-PZ-A5RE 
       15.12         0.26         1.35         4.18         3.62         8.12 
TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
       13.68        16.80        14.14        18.67 

  KIAA2018 MUTATED KIAA2018 WILD-TYPE 
              3.85               0.03 
  KIAA2018 MUTATED KIAA2018 WILD-TYPE 
             19.82              49.38 
  KIAA2018 MUTATED KIAA2018 WILD-TYPE 
             11.87               7.43 
[1] "3.9 - 19.8 (11.9)" "0.0 - 49.4 (7.4)" 
        TCGA-F2-6879         TCGA-F2-6880         TCGA-F2-7273 
"KIAA2018 WILD-TYPE" "KIAA2018 WILD-TYPE" "KIAA2018 WILD-TYPE" 
        TCGA-F2-7276         TCGA-F2-A44G         TCGA-F2-A44H 
"KIAA2018 WILD-TYPE" "KIAA2018 WILD-TYPE" "KIAA2018 WILD-TYPE" 
        TCGA-FB-A4P5         TCGA-FB-A4P6         TCGA-FB-A545 
"KIAA2018 WILD-TYPE" "KIAA2018 WILD-TYPE" "KIAA2018 WILD-TYPE" 
        TCGA-FB-A5VM         TCGA-FB-A78T         TCGA-FB-A7DR 
"KIAA2018 WILD-TYPE" "KIAA2018 WILD-TYPE" "KIAA2018 WILD-TYPE" 
        TCGA-FZ-5920         TCGA-FZ-5922         TCGA-FZ-5923 
"KIAA2018 WILD-TYPE" "KIAA2018 WILD-TYPE" "KIAA2018 WILD-TYPE" 
        TCGA-H6-8124         TCGA-H6-A45N         TCGA-H8-A6C1 
  "KIAA2018 MUTATED" "KIAA2018 WILD-TYPE" "KIAA2018 WILD-TYPE" 
        TCGA-HZ-7289         TCGA-HZ-7918         TCGA-HZ-7919 
"KIAA2018 WILD-TYPE" "KIAA2018 WILD-TYPE" "KIAA2018 WILD-TYPE" 
        TCGA-HZ-7922         TCGA-HZ-7923         TCGA-HZ-7924 
"KIAA2018 WILD-TYPE" "KIAA2018 WILD-TYPE" "KIAA2018 WILD-TYPE" 
        TCGA-HZ-7925         TCGA-HZ-7926         TCGA-HZ-8001 
  "KIAA2018 MUTATED" "KIAA2018 WILD-TYPE" "KIAA2018 WILD-TYPE" 
        TCGA-HZ-8002         TCGA-HZ-8003         TCGA-HZ-8005 
"KIAA2018 WILD-TYPE" "KIAA2018 WILD-TYPE" "KIAA2018 WILD-TYPE" 
        TCGA-HZ-8315         TCGA-HZ-8317         TCGA-HZ-8636 
"KIAA2018 WILD-TYPE" "KIAA2018 WILD-TYPE" "KIAA2018 WILD-TYPE" 
        TCGA-HZ-8638         TCGA-HZ-A49G         TCGA-HZ-A49H 
"KIAA2018 WILD-TYPE" "KIAA2018 WILD-TYPE" "KIAA2018 WILD-TYPE" 
        TCGA-HZ-A4BH         TCGA-HZ-A4BK         TCGA-IB-7644 
  "KIAA2018 MUTATED" "KIAA2018 WILD-TYPE" "KIAA2018 WILD-TYPE" 
        TCGA-IB-7645         TCGA-IB-7646         TCGA-IB-7647 
"KIAA2018 WILD-TYPE" "KIAA2018 WILD-TYPE" "KIAA2018 WILD-TYPE" 
        TCGA-IB-7649         TCGA-IB-7651         TCGA-IB-7652 
"KIAA2018 WILD-TYPE"   "KIAA2018 MUTATED" "KIAA2018 WILD-TYPE" 
        TCGA-IB-7885         TCGA-IB-7886         TCGA-IB-7887 
"KIAA2018 WILD-TYPE" "KIAA2018 WILD-TYPE" "KIAA2018 WILD-TYPE" 
        TCGA-IB-7888         TCGA-IB-7889         TCGA-IB-7890 
"KIAA2018 WILD-TYPE" "KIAA2018 WILD-TYPE" "KIAA2018 WILD-TYPE" 
        TCGA-IB-7891         TCGA-IB-7893         TCGA-IB-7897 
"KIAA2018 WILD-TYPE"   "KIAA2018 MUTATED" "KIAA2018 WILD-TYPE" 
        TCGA-IB-8126         TCGA-IB-8127         TCGA-IB-A5SO 
"KIAA2018 WILD-TYPE" "KIAA2018 WILD-TYPE" "KIAA2018 WILD-TYPE" 
        TCGA-IB-A5SP         TCGA-IB-A5SQ         TCGA-IB-A5SS 
"KIAA2018 WILD-TYPE" "KIAA2018 WILD-TYPE" "KIAA2018 WILD-TYPE" 
        TCGA-IB-A5ST         TCGA-IB-A6UG         TCGA-LB-A7SX 
"KIAA2018 WILD-TYPE" "KIAA2018 WILD-TYPE" "KIAA2018 WILD-TYPE" 
        TCGA-OE-A75W         TCGA-PZ-A5RE         TCGA-Q3-A5QY 
"KIAA2018 WILD-TYPE" "KIAA2018 WILD-TYPE" "KIAA2018 WILD-TYPE" 
        TCGA-US-A779         TCGA-US-A77E         TCGA-US-A77J 
"KIAA2018 WILD-TYPE" "KIAA2018 WILD-TYPE" "KIAA2018 WILD-TYPE" 
        TCGA-F2-6879         TCGA-F2-6880         TCGA-F2-7273 
"KIAA2018 WILD-TYPE" "KIAA2018 WILD-TYPE" "KIAA2018 WILD-TYPE" 
        TCGA-F2-7276         TCGA-F2-A44G         TCGA-F2-A44H 
"KIAA2018 WILD-TYPE" "KIAA2018 WILD-TYPE" "KIAA2018 WILD-TYPE" 
        TCGA-FB-A4P5         TCGA-FB-A4P6         TCGA-FB-A545 
"KIAA2018 WILD-TYPE" "KIAA2018 WILD-TYPE" "KIAA2018 WILD-TYPE" 
        TCGA-FB-A5VM         TCGA-FB-A78T         TCGA-FB-A7DR 
"KIAA2018 WILD-TYPE" "KIAA2018 WILD-TYPE" "KIAA2018 WILD-TYPE" 
        TCGA-FZ-5920         TCGA-FZ-5922         TCGA-FZ-5923 
"KIAA2018 WILD-TYPE" "KIAA2018 WILD-TYPE" "KIAA2018 WILD-TYPE" 
        TCGA-H6-8124         TCGA-H6-A45N         TCGA-H8-A6C1 
  "KIAA2018 MUTATED" "KIAA2018 WILD-TYPE" "KIAA2018 WILD-TYPE" 
        TCGA-HZ-7289         TCGA-HZ-7918         TCGA-HZ-7919 
"KIAA2018 WILD-TYPE" "KIAA2018 WILD-TYPE" "KIAA2018 WILD-TYPE" 
        TCGA-HZ-7922         TCGA-HZ-7923         TCGA-HZ-7924 
"KIAA2018 WILD-TYPE" "KIAA2018 WILD-TYPE" "KIAA2018 WILD-TYPE" 
        TCGA-HZ-7925         TCGA-HZ-7926         TCGA-HZ-8001 
  "KIAA2018 MUTATED" "KIAA2018 WILD-TYPE" "KIAA2018 WILD-TYPE" 
        TCGA-HZ-8002         TCGA-HZ-8003         TCGA-HZ-8005 
"KIAA2018 WILD-TYPE" "KIAA2018 WILD-TYPE" "KIAA2018 WILD-TYPE" 
        TCGA-HZ-8315         TCGA-HZ-8317         TCGA-HZ-8636 
"KIAA2018 WILD-TYPE" "KIAA2018 WILD-TYPE" "KIAA2018 WILD-TYPE" 
        TCGA-HZ-8638         TCGA-HZ-A49G         TCGA-HZ-A49H 
"KIAA2018 WILD-TYPE" "KIAA2018 WILD-TYPE" "KIAA2018 WILD-TYPE" 
        TCGA-HZ-A4BH         TCGA-HZ-A4BK         TCGA-IB-7644 
  "KIAA2018 MUTATED" "KIAA2018 WILD-TYPE" "KIAA2018 WILD-TYPE" 
        TCGA-IB-7645         TCGA-IB-7646         TCGA-IB-7647 
"KIAA2018 WILD-TYPE" "KIAA2018 WILD-TYPE" "KIAA2018 WILD-TYPE" 
        TCGA-IB-7649         TCGA-IB-7651         TCGA-IB-7652 
"KIAA2018 WILD-TYPE"   "KIAA2018 MUTATED" "KIAA2018 WILD-TYPE" 
        TCGA-IB-7885         TCGA-IB-7886         TCGA-IB-7887 
"KIAA2018 WILD-TYPE" "KIAA2018 WILD-TYPE" "KIAA2018 WILD-TYPE" 
        TCGA-IB-7888         TCGA-IB-7889         TCGA-IB-7890 
"KIAA2018 WILD-TYPE" "KIAA2018 WILD-TYPE" "KIAA2018 WILD-TYPE" 
        TCGA-IB-7891         TCGA-IB-7893         TCGA-IB-7897 
"KIAA2018 WILD-TYPE"   "KIAA2018 MUTATED" "KIAA2018 WILD-TYPE" 
        TCGA-IB-8126         TCGA-IB-8127         TCGA-IB-A5SO 
"KIAA2018 WILD-TYPE" "KIAA2018 WILD-TYPE" "KIAA2018 WILD-TYPE" 
        TCGA-IB-A5SP         TCGA-IB-A5SQ         TCGA-IB-A5SS 
"KIAA2018 WILD-TYPE" "KIAA2018 WILD-TYPE" "KIAA2018 WILD-TYPE" 
        TCGA-IB-A5ST         TCGA-IB-A6UG         TCGA-LB-A7SX 
"KIAA2018 WILD-TYPE" "KIAA2018 WILD-TYPE" "KIAA2018 WILD-TYPE" 
        TCGA-OE-A75W         TCGA-PZ-A5RE         TCGA-Q3-A5QY 
"KIAA2018 WILD-TYPE" "KIAA2018 WILD-TYPE" "KIAA2018 WILD-TYPE" 
        TCGA-US-A779         TCGA-US-A77E         TCGA-US-A77J 
"KIAA2018 WILD-TYPE" "KIAA2018 WILD-TYPE" "KIAA2018 WILD-TYPE" 
        TCGA-F2-6879         TCGA-F2-6880         TCGA-F2-7273 
"KIAA2018 WILD-TYPE" "KIAA2018 WILD-TYPE" "KIAA2018 WILD-TYPE" 
        TCGA-F2-7276         TCGA-F2-A44G         TCGA-F2-A44H 
"KIAA2018 WILD-TYPE" "KIAA2018 WILD-TYPE" "KIAA2018 WILD-TYPE" 
        TCGA-FB-A4P5         TCGA-FB-A4P6         TCGA-FB-A545 
"KIAA2018 WILD-TYPE" "KIAA2018 WILD-TYPE" "KIAA2018 WILD-TYPE" 
        TCGA-FB-A5VM         TCGA-FB-A78T         TCGA-FB-A7DR 
"KIAA2018 WILD-TYPE" "KIAA2018 WILD-TYPE" "KIAA2018 WILD-TYPE" 
        TCGA-FZ-5920         TCGA-FZ-5922         TCGA-FZ-5923 
"KIAA2018 WILD-TYPE" "KIAA2018 WILD-TYPE" "KIAA2018 WILD-TYPE" 
        TCGA-H6-8124         TCGA-H6-A45N         TCGA-H8-A6C1 
  "KIAA2018 MUTATED" "KIAA2018 WILD-TYPE" "KIAA2018 WILD-TYPE" 
        TCGA-HZ-7289         TCGA-HZ-7918         TCGA-HZ-7919 
"KIAA2018 WILD-TYPE" "KIAA2018 WILD-TYPE" "KIAA2018 WILD-TYPE" 
        TCGA-HZ-7922         TCGA-HZ-7923         TCGA-HZ-7924 
"KIAA2018 WILD-TYPE" "KIAA2018 WILD-TYPE" "KIAA2018 WILD-TYPE" 
        TCGA-HZ-7925         TCGA-HZ-7926         TCGA-HZ-8001 
  "KIAA2018 MUTATED" "KIAA2018 WILD-TYPE" "KIAA2018 WILD-TYPE" 
        TCGA-HZ-8002         TCGA-HZ-8003         TCGA-HZ-8005 
"KIAA2018 WILD-TYPE" "KIAA2018 WILD-TYPE" "KIAA2018 WILD-TYPE" 
        TCGA-HZ-8315         TCGA-HZ-8317         TCGA-HZ-8636 
"KIAA2018 WILD-TYPE" "KIAA2018 WILD-TYPE" "KIAA2018 WILD-TYPE" 
        TCGA-HZ-8638         TCGA-HZ-A49G         TCGA-HZ-A49H 
"KIAA2018 WILD-TYPE" "KIAA2018 WILD-TYPE" "KIAA2018 WILD-TYPE" 
        TCGA-HZ-A4BH         TCGA-HZ-A4BK         TCGA-IB-7644 
  "KIAA2018 MUTATED" "KIAA2018 WILD-TYPE" "KIAA2018 WILD-TYPE" 
        TCGA-IB-7645         TCGA-IB-7646         TCGA-IB-7647 
"KIAA2018 WILD-TYPE" "KIAA2018 WILD-TYPE" "KIAA2018 WILD-TYPE" 
        TCGA-IB-7649         TCGA-IB-7651         TCGA-IB-7652 
"KIAA2018 WILD-TYPE"   "KIAA2018 MUTATED" "KIAA2018 WILD-TYPE" 
        TCGA-IB-7885         TCGA-IB-7886         TCGA-IB-7887 
"KIAA2018 WILD-TYPE" "KIAA2018 WILD-TYPE" "KIAA2018 WILD-TYPE" 
        TCGA-IB-7888         TCGA-IB-7889         TCGA-IB-7890 
"KIAA2018 WILD-TYPE" "KIAA2018 WILD-TYPE" "KIAA2018 WILD-TYPE" 
        TCGA-IB-7891         TCGA-IB-7893         TCGA-IB-7897 
"KIAA2018 WILD-TYPE"   "KIAA2018 MUTATED" "KIAA2018 WILD-TYPE" 
        TCGA-IB-8126         TCGA-IB-8127         TCGA-IB-A5SO 
"KIAA2018 WILD-TYPE" "KIAA2018 WILD-TYPE" "KIAA2018 WILD-TYPE" 
        TCGA-IB-A5SP         TCGA-IB-A5SQ         TCGA-IB-A5SS 
"KIAA2018 WILD-TYPE" "KIAA2018 WILD-TYPE" "KIAA2018 WILD-TYPE" 
        TCGA-IB-A5ST         TCGA-IB-A6UG         TCGA-LB-A7SX 
"KIAA2018 WILD-TYPE" "KIAA2018 WILD-TYPE" "KIAA2018 WILD-TYPE" 
        TCGA-OE-A75W         TCGA-PZ-A5RE         TCGA-Q3-A5QY 
"KIAA2018 WILD-TYPE" "KIAA2018 WILD-TYPE" "KIAA2018 WILD-TYPE" 
        TCGA-US-A779         TCGA-US-A77E         TCGA-US-A77J 
"KIAA2018 WILD-TYPE" "KIAA2018 WILD-TYPE" "KIAA2018 WILD-TYPE" 
[1] "hr=" "1.1"
D373V2, continuous
                    vv
clus                 STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  KIAA2018 MUTATED          0        1         1         4         0        0
  KIAA2018 WILD-TYPE        1        3        10        47         2        3
D373V3, multiclass
                    vv
clus                 T1+T2 T3+T4
  KIAA2018 MUTATED       1     5
  KIAA2018 WILD-TYPE     5    61
D373V4, multiclass
       clus
vv      KIAA2018 MUTATED KIAA2018 WILD-TYPE
  T1+T2                1                  5
  T3+T4                5                 61
D373V5, binary
                    cls
clus                  0  1
  KIAA2018 MUTATED    2  4
  KIAA2018 WILD-TYPE 15 50
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  KIAA2018 MUTATED      2    4
  KIAA2018 WILD-TYPE   15   50
   clus
vv  KIAA2018 MUTATED KIAA2018 WILD-TYPE
  0                2                 15
  1                4                 50
                    vv
clus                 M0 M1 MX
  KIAA2018 MUTATED    3  0  3
  KIAA2018 WILD-TYPE 36  3 27
D373V6, multiclass
    clus
vv   KIAA2018 MUTATED KIAA2018 WILD-TYPE
  M0                3                 36
  M1                0                  3
  MX                3                 27
D373V7, binary
                    cls
clus                  0  1
  KIAA2018 MUTATED    2  4
  KIAA2018 WILD-TYPE 34 32
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  KIAA2018 MUTATED      2    4
  KIAA2018 WILD-TYPE   34   32
        clus
vv       KIAA2018 MUTATED KIAA2018 WILD-TYPE
  FEMALE                2                 34
  MALE                  4                 32
                    vv
clus                 PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  KIAA2018 MUTATED                                     6
  KIAA2018 WILD-TYPE                                  59
                    vv
clus                 PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  KIAA2018 MUTATED                                       0
  KIAA2018 WILD-TYPE                                     4
                    vv
clus                 PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  KIAA2018 MUTATED                                                  0
  KIAA2018 WILD-TYPE                                                2
D373V8, multiclass
                                                  clus
vv                                                 KIAA2018 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                             6
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                           0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                0
                                                  clus
vv                                                 KIAA2018 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                              59
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                             4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                  2
D373V9, continuous
[1] "Remove cluster labels:" "KIAA2018 MUTATED"      
clus
  KIAA2018 MUTATED KIAA2018 WILD-TYPE 
                 2                 20 
        TCGA-F2-6880         TCGA-FB-A4P5         TCGA-FB-A4P6 
"KIAA2018 WILD-TYPE" "KIAA2018 WILD-TYPE" "KIAA2018 WILD-TYPE" 
        TCGA-FB-A5VM         TCGA-FB-A78T         TCGA-FB-A7DR 
"KIAA2018 WILD-TYPE" "KIAA2018 WILD-TYPE" "KIAA2018 WILD-TYPE" 
        TCGA-H6-A45N         TCGA-H8-A6C1         TCGA-IB-7644 
"KIAA2018 WILD-TYPE" "KIAA2018 WILD-TYPE" "KIAA2018 WILD-TYPE" 
        TCGA-IB-7649         TCGA-IB-7885         TCGA-IB-7886 
"KIAA2018 WILD-TYPE" "KIAA2018 WILD-TYPE" "KIAA2018 WILD-TYPE" 
        TCGA-IB-7887         TCGA-IB-7891         TCGA-IB-8126 
"KIAA2018 WILD-TYPE" "KIAA2018 WILD-TYPE" "KIAA2018 WILD-TYPE" 
        TCGA-IB-8127         TCGA-IB-A5SS         TCGA-IB-A6UG 
"KIAA2018 WILD-TYPE" "KIAA2018 WILD-TYPE" "KIAA2018 WILD-TYPE" 
        TCGA-LB-A7SX         TCGA-OE-A75W 
"KIAA2018 WILD-TYPE" "KIAA2018 WILD-TYPE" 
D373V10, continuous
[1] "Remove cluster labels:" "KIAA2018 MUTATED"      
clus
  KIAA2018 MUTATED KIAA2018 WILD-TYPE 
                 2                 17 
        TCGA-FB-A4P5         TCGA-FB-A4P6         TCGA-FB-A5VM 
"KIAA2018 WILD-TYPE" "KIAA2018 WILD-TYPE" "KIAA2018 WILD-TYPE" 
        TCGA-FB-A78T         TCGA-FB-A7DR         TCGA-H8-A6C1 
"KIAA2018 WILD-TYPE" "KIAA2018 WILD-TYPE" "KIAA2018 WILD-TYPE" 
        TCGA-IB-7644         TCGA-IB-7649         TCGA-IB-7885 
"KIAA2018 WILD-TYPE" "KIAA2018 WILD-TYPE" "KIAA2018 WILD-TYPE" 
        TCGA-IB-7886         TCGA-IB-7891         TCGA-IB-8126 
"KIAA2018 WILD-TYPE" "KIAA2018 WILD-TYPE" "KIAA2018 WILD-TYPE" 
        TCGA-IB-8127         TCGA-IB-A5SS         TCGA-IB-A6UG 
"KIAA2018 WILD-TYPE" "KIAA2018 WILD-TYPE" "KIAA2018 WILD-TYPE" 
        TCGA-LB-A7SX         TCGA-OE-A75W 
"KIAA2018 WILD-TYPE" "KIAA2018 WILD-TYPE" 
                    vv
clus                 R0 R1 RX
  KIAA2018 MUTATED    5  1  0
  KIAA2018 WILD-TYPE 37 23  2
D373V11, multiclass
    clus
vv   KIAA2018 MUTATED KIAA2018 WILD-TYPE
  R0                5                 37
  R1                1                 23
  RX                0                  2
D373V12, continuous

Clustering(374) Variable = EDN1 MUTATION ANALYSIS
D374V1, survival
                sevent
clus2             0  1
  EDN1 MUTATED    2  1
  EDN1 WILD-TYPE 38 28
  EDN1 MUTATED EDN1 WILD-TYPE 
             3             66 
  EDN1 MUTATED EDN1 WILD-TYPE 
             1             28 
$`EDN1 MUTATED`
TCGA-HZ-8317 TCGA-IB-7651 TCGA-IB-8127 
        0.53        19.82        17.16 

$`EDN1 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P5 TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR 
        0.13        11.93        12.66         2.47         0.03         5.46 
TCGA-FZ-5920 TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 
        2.01        36.20        20.81        12.89         7.66        13.02 
TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 
        7.89         0.92         0.66         0.13         0.26        12.13 
TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 
       11.87         0.26         0.62         0.79         0.69         3.95 
TCGA-HZ-8315 TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH 
        0.92         0.16         2.99         0.76         0.95         6.38 
TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 
        1.51        11.41        49.38         4.77        21.90        15.35 
TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 
       15.65        27.98         4.04         3.62        43.79        15.81 
TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-A5SO 
       19.66        16.04         3.85        15.98         0.56        10.82 
TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX 
        9.86         7.20        15.12         0.26         1.35         4.18 
TCGA-OE-A75W TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
        3.62         8.12        13.68        16.80        14.14        18.67 

  EDN1 MUTATED EDN1 WILD-TYPE 
          0.53           0.03 
  EDN1 MUTATED EDN1 WILD-TYPE 
         19.82          49.38 
  EDN1 MUTATED EDN1 WILD-TYPE 
         17.16           7.43 
[1] "0.5 - 19.8 (17.2)" "0.0 - 49.4 (7.4)" 
    TCGA-F2-6879     TCGA-F2-6880     TCGA-F2-7273     TCGA-F2-7276 
"EDN1 WILD-TYPE" "EDN1 WILD-TYPE" "EDN1 WILD-TYPE" "EDN1 WILD-TYPE" 
    TCGA-F2-A44G     TCGA-F2-A44H     TCGA-FB-A4P5     TCGA-FB-A4P6 
"EDN1 WILD-TYPE" "EDN1 WILD-TYPE" "EDN1 WILD-TYPE" "EDN1 WILD-TYPE" 
    TCGA-FB-A545     TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-FB-A7DR 
"EDN1 WILD-TYPE" "EDN1 WILD-TYPE" "EDN1 WILD-TYPE" "EDN1 WILD-TYPE" 
    TCGA-FZ-5920     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-H6-8124 
"EDN1 WILD-TYPE" "EDN1 WILD-TYPE" "EDN1 WILD-TYPE" "EDN1 WILD-TYPE" 
    TCGA-H6-A45N     TCGA-H8-A6C1     TCGA-HZ-7289     TCGA-HZ-7918 
"EDN1 WILD-TYPE" "EDN1 WILD-TYPE" "EDN1 WILD-TYPE" "EDN1 WILD-TYPE" 
    TCGA-HZ-7919     TCGA-HZ-7922     TCGA-HZ-7923     TCGA-HZ-7924 
"EDN1 WILD-TYPE" "EDN1 WILD-TYPE" "EDN1 WILD-TYPE" "EDN1 WILD-TYPE" 
    TCGA-HZ-7925     TCGA-HZ-7926     TCGA-HZ-8001     TCGA-HZ-8002 
"EDN1 WILD-TYPE" "EDN1 WILD-TYPE" "EDN1 WILD-TYPE" "EDN1 WILD-TYPE" 
    TCGA-HZ-8003     TCGA-HZ-8005     TCGA-HZ-8315     TCGA-HZ-8317 
"EDN1 WILD-TYPE" "EDN1 WILD-TYPE" "EDN1 WILD-TYPE"   "EDN1 MUTATED" 
    TCGA-HZ-8636     TCGA-HZ-8638     TCGA-HZ-A49G     TCGA-HZ-A49H 
"EDN1 WILD-TYPE" "EDN1 WILD-TYPE" "EDN1 WILD-TYPE" "EDN1 WILD-TYPE" 
    TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-IB-7644     TCGA-IB-7645 
"EDN1 WILD-TYPE" "EDN1 WILD-TYPE" "EDN1 WILD-TYPE" "EDN1 WILD-TYPE" 
    TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7651 
"EDN1 WILD-TYPE" "EDN1 WILD-TYPE" "EDN1 WILD-TYPE"   "EDN1 MUTATED" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887 
"EDN1 WILD-TYPE" "EDN1 WILD-TYPE" "EDN1 WILD-TYPE" "EDN1 WILD-TYPE" 
    TCGA-IB-7888     TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891 
"EDN1 WILD-TYPE" "EDN1 WILD-TYPE" "EDN1 WILD-TYPE" "EDN1 WILD-TYPE" 
    TCGA-IB-7893     TCGA-IB-7897     TCGA-IB-8126     TCGA-IB-8127 
"EDN1 WILD-TYPE" "EDN1 WILD-TYPE" "EDN1 WILD-TYPE"   "EDN1 MUTATED" 
    TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS 
"EDN1 WILD-TYPE" "EDN1 WILD-TYPE" "EDN1 WILD-TYPE" "EDN1 WILD-TYPE" 
    TCGA-IB-A5ST     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
"EDN1 WILD-TYPE" "EDN1 WILD-TYPE" "EDN1 WILD-TYPE" "EDN1 WILD-TYPE" 
    TCGA-PZ-A5RE     TCGA-Q3-A5QY     TCGA-US-A779     TCGA-US-A77E 
"EDN1 WILD-TYPE" "EDN1 WILD-TYPE" "EDN1 WILD-TYPE" "EDN1 WILD-TYPE" 
    TCGA-US-A77J 
"EDN1 WILD-TYPE" 
    TCGA-F2-6879     TCGA-F2-6880     TCGA-F2-7273     TCGA-F2-7276 
"EDN1 WILD-TYPE" "EDN1 WILD-TYPE" "EDN1 WILD-TYPE" "EDN1 WILD-TYPE" 
    TCGA-F2-A44G     TCGA-F2-A44H     TCGA-FB-A4P5     TCGA-FB-A4P6 
"EDN1 WILD-TYPE" "EDN1 WILD-TYPE" "EDN1 WILD-TYPE" "EDN1 WILD-TYPE" 
    TCGA-FB-A545     TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-FB-A7DR 
"EDN1 WILD-TYPE" "EDN1 WILD-TYPE" "EDN1 WILD-TYPE" "EDN1 WILD-TYPE" 
    TCGA-FZ-5920     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-H6-8124 
"EDN1 WILD-TYPE" "EDN1 WILD-TYPE" "EDN1 WILD-TYPE" "EDN1 WILD-TYPE" 
    TCGA-H6-A45N     TCGA-H8-A6C1     TCGA-HZ-7289     TCGA-HZ-7918 
"EDN1 WILD-TYPE" "EDN1 WILD-TYPE" "EDN1 WILD-TYPE" "EDN1 WILD-TYPE" 
    TCGA-HZ-7919     TCGA-HZ-7922     TCGA-HZ-7923     TCGA-HZ-7924 
"EDN1 WILD-TYPE" "EDN1 WILD-TYPE" "EDN1 WILD-TYPE" "EDN1 WILD-TYPE" 
    TCGA-HZ-7925     TCGA-HZ-7926     TCGA-HZ-8001     TCGA-HZ-8002 
"EDN1 WILD-TYPE" "EDN1 WILD-TYPE" "EDN1 WILD-TYPE" "EDN1 WILD-TYPE" 
    TCGA-HZ-8003     TCGA-HZ-8005     TCGA-HZ-8315     TCGA-HZ-8317 
"EDN1 WILD-TYPE" "EDN1 WILD-TYPE" "EDN1 WILD-TYPE"   "EDN1 MUTATED" 
    TCGA-HZ-8636     TCGA-HZ-8638     TCGA-HZ-A49G     TCGA-HZ-A49H 
"EDN1 WILD-TYPE" "EDN1 WILD-TYPE" "EDN1 WILD-TYPE" "EDN1 WILD-TYPE" 
    TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-IB-7644     TCGA-IB-7645 
"EDN1 WILD-TYPE" "EDN1 WILD-TYPE" "EDN1 WILD-TYPE" "EDN1 WILD-TYPE" 
    TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7651 
"EDN1 WILD-TYPE" "EDN1 WILD-TYPE" "EDN1 WILD-TYPE"   "EDN1 MUTATED" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887 
"EDN1 WILD-TYPE" "EDN1 WILD-TYPE" "EDN1 WILD-TYPE" "EDN1 WILD-TYPE" 
    TCGA-IB-7888     TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891 
"EDN1 WILD-TYPE" "EDN1 WILD-TYPE" "EDN1 WILD-TYPE" "EDN1 WILD-TYPE" 
    TCGA-IB-7893     TCGA-IB-7897     TCGA-IB-8126     TCGA-IB-8127 
"EDN1 WILD-TYPE" "EDN1 WILD-TYPE" "EDN1 WILD-TYPE"   "EDN1 MUTATED" 
    TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS 
"EDN1 WILD-TYPE" "EDN1 WILD-TYPE" "EDN1 WILD-TYPE" "EDN1 WILD-TYPE" 
    TCGA-IB-A5ST     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
"EDN1 WILD-TYPE" "EDN1 WILD-TYPE" "EDN1 WILD-TYPE" "EDN1 WILD-TYPE" 
    TCGA-PZ-A5RE     TCGA-Q3-A5QY     TCGA-US-A779     TCGA-US-A77E 
"EDN1 WILD-TYPE" "EDN1 WILD-TYPE" "EDN1 WILD-TYPE" "EDN1 WILD-TYPE" 
    TCGA-US-A77J 
"EDN1 WILD-TYPE" 
    TCGA-F2-6879     TCGA-F2-6880     TCGA-F2-7273     TCGA-F2-7276 
"EDN1 WILD-TYPE" "EDN1 WILD-TYPE" "EDN1 WILD-TYPE" "EDN1 WILD-TYPE" 
    TCGA-F2-A44G     TCGA-F2-A44H     TCGA-FB-A4P5     TCGA-FB-A4P6 
"EDN1 WILD-TYPE" "EDN1 WILD-TYPE" "EDN1 WILD-TYPE" "EDN1 WILD-TYPE" 
    TCGA-FB-A545     TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-FB-A7DR 
"EDN1 WILD-TYPE" "EDN1 WILD-TYPE" "EDN1 WILD-TYPE" "EDN1 WILD-TYPE" 
    TCGA-FZ-5920     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-H6-8124 
"EDN1 WILD-TYPE" "EDN1 WILD-TYPE" "EDN1 WILD-TYPE" "EDN1 WILD-TYPE" 
    TCGA-H6-A45N     TCGA-H8-A6C1     TCGA-HZ-7289     TCGA-HZ-7918 
"EDN1 WILD-TYPE" "EDN1 WILD-TYPE" "EDN1 WILD-TYPE" "EDN1 WILD-TYPE" 
    TCGA-HZ-7919     TCGA-HZ-7922     TCGA-HZ-7923     TCGA-HZ-7924 
"EDN1 WILD-TYPE" "EDN1 WILD-TYPE" "EDN1 WILD-TYPE" "EDN1 WILD-TYPE" 
    TCGA-HZ-7925     TCGA-HZ-7926     TCGA-HZ-8001     TCGA-HZ-8002 
"EDN1 WILD-TYPE" "EDN1 WILD-TYPE" "EDN1 WILD-TYPE" "EDN1 WILD-TYPE" 
    TCGA-HZ-8003     TCGA-HZ-8005     TCGA-HZ-8315     TCGA-HZ-8317 
"EDN1 WILD-TYPE" "EDN1 WILD-TYPE" "EDN1 WILD-TYPE"   "EDN1 MUTATED" 
    TCGA-HZ-8636     TCGA-HZ-8638     TCGA-HZ-A49G     TCGA-HZ-A49H 
"EDN1 WILD-TYPE" "EDN1 WILD-TYPE" "EDN1 WILD-TYPE" "EDN1 WILD-TYPE" 
    TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-IB-7644     TCGA-IB-7645 
"EDN1 WILD-TYPE" "EDN1 WILD-TYPE" "EDN1 WILD-TYPE" "EDN1 WILD-TYPE" 
    TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7651 
"EDN1 WILD-TYPE" "EDN1 WILD-TYPE" "EDN1 WILD-TYPE"   "EDN1 MUTATED" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887 
"EDN1 WILD-TYPE" "EDN1 WILD-TYPE" "EDN1 WILD-TYPE" "EDN1 WILD-TYPE" 
    TCGA-IB-7888     TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891 
"EDN1 WILD-TYPE" "EDN1 WILD-TYPE" "EDN1 WILD-TYPE" "EDN1 WILD-TYPE" 
    TCGA-IB-7893     TCGA-IB-7897     TCGA-IB-8126     TCGA-IB-8127 
"EDN1 WILD-TYPE" "EDN1 WILD-TYPE" "EDN1 WILD-TYPE"   "EDN1 MUTATED" 
    TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS 
"EDN1 WILD-TYPE" "EDN1 WILD-TYPE" "EDN1 WILD-TYPE" "EDN1 WILD-TYPE" 
    TCGA-IB-A5ST     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
"EDN1 WILD-TYPE" "EDN1 WILD-TYPE" "EDN1 WILD-TYPE" "EDN1 WILD-TYPE" 
    TCGA-PZ-A5RE     TCGA-Q3-A5QY     TCGA-US-A779     TCGA-US-A77E 
"EDN1 WILD-TYPE" "EDN1 WILD-TYPE" "EDN1 WILD-TYPE" "EDN1 WILD-TYPE" 
    TCGA-US-A77J 
"EDN1 WILD-TYPE" 
[1] "hr=" "2"  
D374V2, continuous
                vv
clus             STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  EDN1 MUTATED          0        0         0         3         0        0
  EDN1 WILD-TYPE        1        4        11        48         2        3
D374V3, multiclass
                vv
clus             T1+T2 T3+T4
  EDN1 MUTATED       0     3
  EDN1 WILD-TYPE     6    63
D374V4, multiclass
       clus
vv      EDN1 MUTATED EDN1 WILD-TYPE
  T1+T2            0              6
  T3+T4            3             63
D374V5, binary
                cls
clus              0  1
  EDN1 MUTATED    0  3
  EDN1 WILD-TYPE 17 51
[1] "tbl2"
                cls
clus             [,1] [,2]
  EDN1 MUTATED      0    3
  EDN1 WILD-TYPE   17   51
   clus
vv  EDN1 MUTATED EDN1 WILD-TYPE
  0            0             17
  1            3             51
                vv
clus             M0 M1 MX
  EDN1 MUTATED    2  0  1
  EDN1 WILD-TYPE 37  3 29
D374V6, multiclass
    clus
vv   EDN1 MUTATED EDN1 WILD-TYPE
  M0            2             37
  M1            0              3
  MX            1             29
D374V7, binary
                cls
clus              0  1
  EDN1 MUTATED    2  1
  EDN1 WILD-TYPE 34 35
[1] "tbl2"
                cls
clus             [,1] [,2]
  EDN1 MUTATED      2    1
  EDN1 WILD-TYPE   34   35
        clus
vv       EDN1 MUTATED EDN1 WILD-TYPE
  FEMALE            2             34
  MALE              1             35
                vv
clus             PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  EDN1 MUTATED                                     3
  EDN1 WILD-TYPE                                  62
                vv
clus             PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  EDN1 MUTATED                                       0
  EDN1 WILD-TYPE                                     4
                vv
clus             PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  EDN1 MUTATED                                                  0
  EDN1 WILD-TYPE                                                2
D374V8, multiclass
                                                  clus
vv                                                 EDN1 MUTATED EDN1 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                         3             62
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                       0              4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA            0              2
D374V9, continuous
[1] "Remove cluster labels:" "EDN1 MUTATED"          
clus
  EDN1 MUTATED EDN1 WILD-TYPE 
             2             20 
    TCGA-F2-6880     TCGA-FB-A4P5     TCGA-FB-A4P6     TCGA-FB-A5VM 
"EDN1 WILD-TYPE" "EDN1 WILD-TYPE" "EDN1 WILD-TYPE" "EDN1 WILD-TYPE" 
    TCGA-FB-A78T     TCGA-FB-A7DR     TCGA-H6-8124     TCGA-H6-A45N 
"EDN1 WILD-TYPE" "EDN1 WILD-TYPE" "EDN1 WILD-TYPE" "EDN1 WILD-TYPE" 
    TCGA-H8-A6C1     TCGA-IB-7644     TCGA-IB-7649     TCGA-IB-7885 
"EDN1 WILD-TYPE" "EDN1 WILD-TYPE" "EDN1 WILD-TYPE" "EDN1 WILD-TYPE" 
    TCGA-IB-7886     TCGA-IB-7887     TCGA-IB-7891     TCGA-IB-8126 
"EDN1 WILD-TYPE" "EDN1 WILD-TYPE" "EDN1 WILD-TYPE" "EDN1 WILD-TYPE" 
    TCGA-IB-A5SS     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
"EDN1 WILD-TYPE" "EDN1 WILD-TYPE" "EDN1 WILD-TYPE" "EDN1 WILD-TYPE" 
D374V10, continuous
[1] "Remove cluster labels:" "EDN1 MUTATED"          
clus
  EDN1 MUTATED EDN1 WILD-TYPE 
             2             17 
    TCGA-FB-A4P5     TCGA-FB-A4P6     TCGA-FB-A5VM     TCGA-FB-A78T 
"EDN1 WILD-TYPE" "EDN1 WILD-TYPE" "EDN1 WILD-TYPE" "EDN1 WILD-TYPE" 
    TCGA-FB-A7DR     TCGA-H6-8124     TCGA-H8-A6C1     TCGA-IB-7644 
"EDN1 WILD-TYPE" "EDN1 WILD-TYPE" "EDN1 WILD-TYPE" "EDN1 WILD-TYPE" 
    TCGA-IB-7649     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7891 
"EDN1 WILD-TYPE" "EDN1 WILD-TYPE" "EDN1 WILD-TYPE" "EDN1 WILD-TYPE" 
    TCGA-IB-8126     TCGA-IB-A5SS     TCGA-IB-A6UG     TCGA-LB-A7SX 
"EDN1 WILD-TYPE" "EDN1 WILD-TYPE" "EDN1 WILD-TYPE" "EDN1 WILD-TYPE" 
    TCGA-OE-A75W 
"EDN1 WILD-TYPE" 
                vv
clus             R0 R1 RX
  EDN1 MUTATED    1  2  0
  EDN1 WILD-TYPE 41 22  2
D374V11, multiclass
    clus
vv   EDN1 MUTATED EDN1 WILD-TYPE
  R0            1             41
  R1            2             22
  RX            0              2
D374V12, continuous

Clustering(375) Variable = LRRC41 MUTATION ANALYSIS
D375V1, survival
                  sevent
clus2               0  1
  LRRC41 MUTATED    3  1
  LRRC41 WILD-TYPE 37 28
  LRRC41 MUTATED LRRC41 WILD-TYPE 
               4               65 
  LRRC41 MUTATED LRRC41 WILD-TYPE 
               1               28 
$`LRRC41 MUTATED`
TCGA-F2-A44H TCGA-FB-A545 TCGA-IB-7897 TCGA-Q3-A5QY 
       19.27        12.66        15.98        13.68 

$`LRRC41 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-FB-A4P5 
       10.98         9.70        11.84         7.10         5.03         0.13 
TCGA-FB-A4P6 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR TCGA-FZ-5920 TCGA-FZ-5922 
       11.93         2.47         0.03         5.46         2.01        36.20 
TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7289 TCGA-HZ-7918 
       20.81        12.89         7.66        13.02         7.89         0.92 
TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 
        0.66         0.13         0.26        12.13        11.87         0.26 
TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 
        0.62         0.79         0.69         3.95         0.92         0.53 
TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK 
        0.16         2.99         0.76         0.95         6.38         1.51 
TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7651 
       11.41        49.38         4.77        21.90        15.35        19.82 
TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 
       15.65        27.98         4.04         3.62        43.79        15.81 
TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO 
       19.66        16.04         3.85         0.56        17.16        10.82 
TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX 
        9.86         7.20        15.12         0.26         1.35         4.18 
TCGA-OE-A75W TCGA-PZ-A5RE TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
        3.62         8.12        16.80        14.14        18.67 

  LRRC41 MUTATED LRRC41 WILD-TYPE 
           12.66             0.03 
  LRRC41 MUTATED LRRC41 WILD-TYPE 
           19.27            49.38 
  LRRC41 MUTATED LRRC41 WILD-TYPE 
           14.83             7.10 
[1] "12.7 - 19.3 (14.8)" "0.0 - 49.4 (7.1)"  
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
"LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"LRRC41 WILD-TYPE"   "LRRC41 MUTATED" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
  "LRRC41 MUTATED" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
"LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
"LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
"LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
"LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
"LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
"LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
"LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
"LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
"LRRC41 WILD-TYPE"   "LRRC41 MUTATED" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
"LRRC41 WILD-TYPE"   "LRRC41 MUTATED" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" 
      TCGA-US-A77J 
"LRRC41 WILD-TYPE" 
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
"LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"LRRC41 WILD-TYPE"   "LRRC41 MUTATED" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
  "LRRC41 MUTATED" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
"LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
"LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
"LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
"LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
"LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
"LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
"LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
"LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
"LRRC41 WILD-TYPE"   "LRRC41 MUTATED" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
"LRRC41 WILD-TYPE"   "LRRC41 MUTATED" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" 
      TCGA-US-A77J 
"LRRC41 WILD-TYPE" 
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
"LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"LRRC41 WILD-TYPE"   "LRRC41 MUTATED" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
  "LRRC41 MUTATED" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
"LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
"LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
"LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
"LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
"LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
"LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
"LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
"LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
"LRRC41 WILD-TYPE"   "LRRC41 MUTATED" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
"LRRC41 WILD-TYPE"   "LRRC41 MUTATED" "LRRC41 WILD-TYPE" "LRRC41 WILD-TYPE" 
      TCGA-US-A77J 
"LRRC41 WILD-TYPE" 
[1] "hr=" "2.5"
D375V2, continuous
                  vv
clus               STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  LRRC41 MUTATED          0        0         1         3         0        0
  LRRC41 WILD-TYPE        1        4        10        48         2        3
D375V3, multiclass
                  vv
clus               T1+T2 T3+T4
  LRRC41 MUTATED       0     4
  LRRC41 WILD-TYPE     6    62
D375V4, multiclass
       clus
vv      LRRC41 MUTATED LRRC41 WILD-TYPE
  T1+T2              0                6
  T3+T4              4               62
D375V5, binary
                  cls
clus                0  1
  LRRC41 MUTATED    1  3
  LRRC41 WILD-TYPE 16 51
[1] "tbl2"
                  cls
clus               [,1] [,2]
  LRRC41 MUTATED      1    3
  LRRC41 WILD-TYPE   16   51
   clus
vv  LRRC41 MUTATED LRRC41 WILD-TYPE
  0              1               16
  1              3               51
                  vv
clus               M0 M1 MX
  LRRC41 MUTATED    3  0  1
  LRRC41 WILD-TYPE 36  3 29
D375V6, multiclass
    clus
vv   LRRC41 MUTATED LRRC41 WILD-TYPE
  M0              3               36
  M1              0                3
  MX              1               29
D375V7, binary
                  cls
clus                0  1
  LRRC41 MUTATED    2  2
  LRRC41 WILD-TYPE 34 34
[1] "tbl2"
                  cls
clus               [,1] [,2]
  LRRC41 MUTATED      2    2
  LRRC41 WILD-TYPE   34   34
        clus
vv       LRRC41 MUTATED LRRC41 WILD-TYPE
  FEMALE              2               34
  MALE                2               34
                  vv
clus               PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  LRRC41 MUTATED                                     4
  LRRC41 WILD-TYPE                                  61
                  vv
clus               PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  LRRC41 MUTATED                                       0
  LRRC41 WILD-TYPE                                     4
                  vv
clus               PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  LRRC41 MUTATED                                                  0
  LRRC41 WILD-TYPE                                                2
D375V8, multiclass
                                                  clus
vv                                                 LRRC41 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                           4
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                         0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA              0
                                                  clus
vv                                                 LRRC41 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                            61
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                           4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                2
D375V9, continuous
D375V10, continuous
                  vv
clus               R0 R1 RX
  LRRC41 MUTATED    3  0  0
  LRRC41 WILD-TYPE 39 24  2
D375V11, multiclass
    clus
vv   LRRC41 MUTATED LRRC41 WILD-TYPE
  R0              3               39
  R1              0               24
  RX              0                2
D375V12, continuous

Clustering(376) Variable = EIF5B MUTATION ANALYSIS
D376V1, survival
                 sevent
clus2              0  1
  EIF5B MUTATED    3  2
  EIF5B WILD-TYPE 37 27
  EIF5B MUTATED EIF5B WILD-TYPE 
              5              64 
  EIF5B MUTATED EIF5B WILD-TYPE 
              2              27 
$`EIF5B MUTATED`
TCGA-F2-7276 TCGA-HZ-8003 TCGA-HZ-8636 TCGA-HZ-A49G TCGA-IB-7651 
        7.10         0.69         0.16         0.76        19.82 

$`EIF5B WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-A44G TCGA-F2-A44H TCGA-FB-A4P5 
       10.98         9.70        11.84         5.03        19.27         0.13 
TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR TCGA-FZ-5920 
       11.93        12.66         2.47         0.03         5.46         2.01 
TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7289 
       36.20        20.81        12.89         7.66        13.02         7.89 
TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 
        0.92         0.66         0.13         0.26        12.13        11.87 
TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 
        0.26         0.62         0.79         3.95         0.92         0.53 
TCGA-HZ-8638 TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7645 
        2.99         0.95         6.38         1.51        11.41        49.38 
TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7886 
        4.77        21.90        15.35        15.65        27.98         4.04 
TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-7893 
        3.62        43.79        15.81        19.66        16.04         3.85 
TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ 
       15.98         0.56        17.16        10.82         9.86         7.20 
TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W TCGA-PZ-A5RE 
       15.12         0.26         1.35         4.18         3.62         8.12 
TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
       13.68        16.80        14.14        18.67 

  EIF5B MUTATED EIF5B WILD-TYPE 
           0.16            0.03 
  EIF5B MUTATED EIF5B WILD-TYPE 
          19.82           49.38 
  EIF5B MUTATED EIF5B WILD-TYPE 
          0.760           8.005 
[1] "0.2 - 19.8 (0.8)" "0.0 - 49.4 (8.0)"
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE"   "EIF5B MUTATED" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
  "EIF5B MUTATED" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
  "EIF5B MUTATED" "EIF5B WILD-TYPE"   "EIF5B MUTATED" "EIF5B WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE"   "EIF5B MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" 
     TCGA-US-A77J 
"EIF5B WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE"   "EIF5B MUTATED" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
  "EIF5B MUTATED" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
  "EIF5B MUTATED" "EIF5B WILD-TYPE"   "EIF5B MUTATED" "EIF5B WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE"   "EIF5B MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" 
     TCGA-US-A77J 
"EIF5B WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE"   "EIF5B MUTATED" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
  "EIF5B MUTATED" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
  "EIF5B MUTATED" "EIF5B WILD-TYPE"   "EIF5B MUTATED" "EIF5B WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE"   "EIF5B MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" 
     TCGA-US-A77J 
"EIF5B WILD-TYPE" 
[1] "hr=" "1.5"
D376V2, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  EIF5B MUTATED          0        0         0         5         0        1
  EIF5B WILD-TYPE        1        4        11        46         2        2
D376V3, multiclass
                 vv
clus              T1+T2 T3+T4
  EIF5B MUTATED       1     5
  EIF5B WILD-TYPE     5    61
D376V4, multiclass
       clus
vv      EIF5B MUTATED EIF5B WILD-TYPE
  T1+T2             1               5
  T3+T4             5              61
D376V5, binary
                 cls
clus               0  1
  EIF5B MUTATED    1  5
  EIF5B WILD-TYPE 16 49
[1] "tbl2"
                 cls
clus              [,1] [,2]
  EIF5B MUTATED      1    5
  EIF5B WILD-TYPE   16   49
   clus
vv  EIF5B MUTATED EIF5B WILD-TYPE
  0             1              16
  1             5              49
                 vv
clus              M0 M1 MX
  EIF5B MUTATED    2  1  3
  EIF5B WILD-TYPE 37  2 27
D376V6, multiclass
    clus
vv   EIF5B MUTATED EIF5B WILD-TYPE
  M0             2              37
  M1             1               2
  MX             3              27
D376V7, binary
                 cls
clus               0  1
  EIF5B MUTATED    4  2
  EIF5B WILD-TYPE 32 34
[1] "tbl2"
                 cls
clus              [,1] [,2]
  EIF5B MUTATED      4    2
  EIF5B WILD-TYPE   32   34
        clus
vv       EIF5B MUTATED EIF5B WILD-TYPE
  FEMALE             4              32
  MALE               2              34
                 vv
clus              PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  EIF5B MUTATED                                     6
  EIF5B WILD-TYPE                                  59
                 vv
clus              PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  EIF5B MUTATED                                       0
  EIF5B WILD-TYPE                                     4
                 vv
clus              PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  EIF5B MUTATED                                                  0
  EIF5B WILD-TYPE                                                2
D376V8, multiclass
                                                  clus
vv                                                 EIF5B MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                          6
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                        0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA             0
                                                  clus
vv                                                 EIF5B WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                           59
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                          4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA               2
D376V9, continuous
[1] "Remove cluster labels:" "EIF5B MUTATED"         
clus
  EIF5B MUTATED EIF5B WILD-TYPE 
              1              21 
     TCGA-F2-6880      TCGA-FB-A4P5      TCGA-FB-A4P6      TCGA-FB-A5VM 
"EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" 
     TCGA-FB-A78T      TCGA-FB-A7DR      TCGA-H6-8124      TCGA-H6-A45N 
"EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" 
     TCGA-H8-A6C1      TCGA-IB-7644      TCGA-IB-7649      TCGA-IB-7885 
"EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" 
     TCGA-IB-7886      TCGA-IB-7887      TCGA-IB-7891      TCGA-IB-8126 
"EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" 
     TCGA-IB-8127      TCGA-IB-A5SS      TCGA-IB-A6UG      TCGA-LB-A7SX 
"EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" 
     TCGA-OE-A75W 
"EIF5B WILD-TYPE" 
D376V10, continuous
[1] "Remove cluster labels:" "EIF5B MUTATED"         
clus
  EIF5B MUTATED EIF5B WILD-TYPE 
              1              18 
     TCGA-FB-A4P5      TCGA-FB-A4P6      TCGA-FB-A5VM      TCGA-FB-A78T 
"EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" 
     TCGA-FB-A7DR      TCGA-H6-8124      TCGA-H8-A6C1      TCGA-IB-7644 
"EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" 
     TCGA-IB-7649      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7891 
"EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" 
     TCGA-IB-8126      TCGA-IB-8127      TCGA-IB-A5SS      TCGA-IB-A6UG 
"EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" "EIF5B WILD-TYPE" 
     TCGA-LB-A7SX      TCGA-OE-A75W 
"EIF5B WILD-TYPE" "EIF5B WILD-TYPE" 
                 vv
clus              R0 R1 RX
  EIF5B MUTATED    3  3  0
  EIF5B WILD-TYPE 39 21  2
D376V11, multiclass
    clus
vv   EIF5B MUTATED EIF5B WILD-TYPE
  R0             3              39
  R1             3              21
  RX             0               2
D376V12, continuous

Clustering(377) Variable = AFF3 MUTATION ANALYSIS
D377V1, survival
                sevent
clus2             0  1
  AFF3 MUTATED    8  2
  AFF3 WILD-TYPE 32 27
  AFF3 MUTATED AFF3 WILD-TYPE 
            10             59 
  AFF3 MUTATED AFF3 WILD-TYPE 
             2             27 
$`AFF3 MUTATED`
TCGA-FB-A545 TCGA-HZ-7289 TCGA-HZ-8002 TCGA-HZ-A49G TCGA-HZ-A4BK TCGA-IB-7651 
       12.66         7.89         0.79         0.76         1.51        19.82 
TCGA-IB-8127 TCGA-IB-A6UG TCGA-LB-A7SX TCGA-PZ-A5RE 
       17.16         1.35         4.18         8.12 

$`AFF3 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P5 TCGA-FB-A4P6 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR TCGA-FZ-5920 
        0.13        11.93         2.47         0.03         5.46         2.01 
TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7918 
       36.20        20.81        12.89         7.66        13.02         0.92 
TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 
        0.66         0.13         0.26        12.13        11.87         0.26 
TCGA-HZ-8001 TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8636 
        0.62         0.69         3.95         0.92         0.53         0.16 
TCGA-HZ-8638 TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7646 
        2.99         0.95         6.38        11.41        49.38         4.77 
TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 
       21.90        15.35        15.65        27.98         4.04         3.62 
TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-7897 
       43.79        15.81        19.66        16.04         3.85        15.98 
TCGA-IB-8126 TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST 
        0.56        10.82         9.86         7.20        15.12         0.26 
TCGA-OE-A75W TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
        3.62        13.68        16.80        14.14        18.67 

  AFF3 MUTATED AFF3 WILD-TYPE 
          0.76           0.03 
  AFF3 MUTATED AFF3 WILD-TYPE 
         19.82          49.38 
  AFF3 MUTATED AFF3 WILD-TYPE 
         6.035          7.660 
[1] "0.8 - 19.8 (6.0)" "0.0 - 49.4 (7.7)"
    TCGA-F2-6879     TCGA-F2-6880     TCGA-F2-7273     TCGA-F2-7276 
"AFF3 WILD-TYPE" "AFF3 WILD-TYPE" "AFF3 WILD-TYPE" "AFF3 WILD-TYPE" 
    TCGA-F2-A44G     TCGA-F2-A44H     TCGA-FB-A4P5     TCGA-FB-A4P6 
"AFF3 WILD-TYPE" "AFF3 WILD-TYPE" "AFF3 WILD-TYPE" "AFF3 WILD-TYPE" 
    TCGA-FB-A545     TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-FB-A7DR 
  "AFF3 MUTATED" "AFF3 WILD-TYPE" "AFF3 WILD-TYPE" "AFF3 WILD-TYPE" 
    TCGA-FZ-5920     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-H6-8124 
"AFF3 WILD-TYPE" "AFF3 WILD-TYPE" "AFF3 WILD-TYPE" "AFF3 WILD-TYPE" 
    TCGA-H6-A45N     TCGA-H8-A6C1     TCGA-HZ-7289     TCGA-HZ-7918 
"AFF3 WILD-TYPE" "AFF3 WILD-TYPE"   "AFF3 MUTATED" "AFF3 WILD-TYPE" 
    TCGA-HZ-7919     TCGA-HZ-7922     TCGA-HZ-7923     TCGA-HZ-7924 
"AFF3 WILD-TYPE" "AFF3 WILD-TYPE" "AFF3 WILD-TYPE" "AFF3 WILD-TYPE" 
    TCGA-HZ-7925     TCGA-HZ-7926     TCGA-HZ-8001     TCGA-HZ-8002 
"AFF3 WILD-TYPE" "AFF3 WILD-TYPE" "AFF3 WILD-TYPE"   "AFF3 MUTATED" 
    TCGA-HZ-8003     TCGA-HZ-8005     TCGA-HZ-8315     TCGA-HZ-8317 
"AFF3 WILD-TYPE" "AFF3 WILD-TYPE" "AFF3 WILD-TYPE" "AFF3 WILD-TYPE" 
    TCGA-HZ-8636     TCGA-HZ-8638     TCGA-HZ-A49G     TCGA-HZ-A49H 
"AFF3 WILD-TYPE" "AFF3 WILD-TYPE"   "AFF3 MUTATED" "AFF3 WILD-TYPE" 
    TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-IB-7644     TCGA-IB-7645 
"AFF3 WILD-TYPE"   "AFF3 MUTATED" "AFF3 WILD-TYPE" "AFF3 WILD-TYPE" 
    TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7651 
"AFF3 WILD-TYPE" "AFF3 WILD-TYPE" "AFF3 WILD-TYPE"   "AFF3 MUTATED" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887 
"AFF3 WILD-TYPE" "AFF3 WILD-TYPE" "AFF3 WILD-TYPE" "AFF3 WILD-TYPE" 
    TCGA-IB-7888     TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891 
"AFF3 WILD-TYPE" "AFF3 WILD-TYPE" "AFF3 WILD-TYPE" "AFF3 WILD-TYPE" 
    TCGA-IB-7893     TCGA-IB-7897     TCGA-IB-8126     TCGA-IB-8127 
"AFF3 WILD-TYPE" "AFF3 WILD-TYPE" "AFF3 WILD-TYPE"   "AFF3 MUTATED" 
    TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS 
"AFF3 WILD-TYPE" "AFF3 WILD-TYPE" "AFF3 WILD-TYPE" "AFF3 WILD-TYPE" 
    TCGA-IB-A5ST     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
"AFF3 WILD-TYPE"   "AFF3 MUTATED"   "AFF3 MUTATED" "AFF3 WILD-TYPE" 
    TCGA-PZ-A5RE     TCGA-Q3-A5QY     TCGA-US-A779     TCGA-US-A77E 
  "AFF3 MUTATED" "AFF3 WILD-TYPE" "AFF3 WILD-TYPE" "AFF3 WILD-TYPE" 
    TCGA-US-A77J 
"AFF3 WILD-TYPE" 
    TCGA-F2-6879     TCGA-F2-6880     TCGA-F2-7273     TCGA-F2-7276 
"AFF3 WILD-TYPE" "AFF3 WILD-TYPE" "AFF3 WILD-TYPE" "AFF3 WILD-TYPE" 
    TCGA-F2-A44G     TCGA-F2-A44H     TCGA-FB-A4P5     TCGA-FB-A4P6 
"AFF3 WILD-TYPE" "AFF3 WILD-TYPE" "AFF3 WILD-TYPE" "AFF3 WILD-TYPE" 
    TCGA-FB-A545     TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-FB-A7DR 
  "AFF3 MUTATED" "AFF3 WILD-TYPE" "AFF3 WILD-TYPE" "AFF3 WILD-TYPE" 
    TCGA-FZ-5920     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-H6-8124 
"AFF3 WILD-TYPE" "AFF3 WILD-TYPE" "AFF3 WILD-TYPE" "AFF3 WILD-TYPE" 
    TCGA-H6-A45N     TCGA-H8-A6C1     TCGA-HZ-7289     TCGA-HZ-7918 
"AFF3 WILD-TYPE" "AFF3 WILD-TYPE"   "AFF3 MUTATED" "AFF3 WILD-TYPE" 
    TCGA-HZ-7919     TCGA-HZ-7922     TCGA-HZ-7923     TCGA-HZ-7924 
"AFF3 WILD-TYPE" "AFF3 WILD-TYPE" "AFF3 WILD-TYPE" "AFF3 WILD-TYPE" 
    TCGA-HZ-7925     TCGA-HZ-7926     TCGA-HZ-8001     TCGA-HZ-8002 
"AFF3 WILD-TYPE" "AFF3 WILD-TYPE" "AFF3 WILD-TYPE"   "AFF3 MUTATED" 
    TCGA-HZ-8003     TCGA-HZ-8005     TCGA-HZ-8315     TCGA-HZ-8317 
"AFF3 WILD-TYPE" "AFF3 WILD-TYPE" "AFF3 WILD-TYPE" "AFF3 WILD-TYPE" 
    TCGA-HZ-8636     TCGA-HZ-8638     TCGA-HZ-A49G     TCGA-HZ-A49H 
"AFF3 WILD-TYPE" "AFF3 WILD-TYPE"   "AFF3 MUTATED" "AFF3 WILD-TYPE" 
    TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-IB-7644     TCGA-IB-7645 
"AFF3 WILD-TYPE"   "AFF3 MUTATED" "AFF3 WILD-TYPE" "AFF3 WILD-TYPE" 
    TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7651 
"AFF3 WILD-TYPE" "AFF3 WILD-TYPE" "AFF3 WILD-TYPE"   "AFF3 MUTATED" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887 
"AFF3 WILD-TYPE" "AFF3 WILD-TYPE" "AFF3 WILD-TYPE" "AFF3 WILD-TYPE" 
    TCGA-IB-7888     TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891 
"AFF3 WILD-TYPE" "AFF3 WILD-TYPE" "AFF3 WILD-TYPE" "AFF3 WILD-TYPE" 
    TCGA-IB-7893     TCGA-IB-7897     TCGA-IB-8126     TCGA-IB-8127 
"AFF3 WILD-TYPE" "AFF3 WILD-TYPE" "AFF3 WILD-TYPE"   "AFF3 MUTATED" 
    TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS 
"AFF3 WILD-TYPE" "AFF3 WILD-TYPE" "AFF3 WILD-TYPE" "AFF3 WILD-TYPE" 
    TCGA-IB-A5ST     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
"AFF3 WILD-TYPE"   "AFF3 MUTATED"   "AFF3 MUTATED" "AFF3 WILD-TYPE" 
    TCGA-PZ-A5RE     TCGA-Q3-A5QY     TCGA-US-A779     TCGA-US-A77E 
  "AFF3 MUTATED" "AFF3 WILD-TYPE" "AFF3 WILD-TYPE" "AFF3 WILD-TYPE" 
    TCGA-US-A77J 
"AFF3 WILD-TYPE" 
    TCGA-F2-6879     TCGA-F2-6880     TCGA-F2-7273     TCGA-F2-7276 
"AFF3 WILD-TYPE" "AFF3 WILD-TYPE" "AFF3 WILD-TYPE" "AFF3 WILD-TYPE" 
    TCGA-F2-A44G     TCGA-F2-A44H     TCGA-FB-A4P5     TCGA-FB-A4P6 
"AFF3 WILD-TYPE" "AFF3 WILD-TYPE" "AFF3 WILD-TYPE" "AFF3 WILD-TYPE" 
    TCGA-FB-A545     TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-FB-A7DR 
  "AFF3 MUTATED" "AFF3 WILD-TYPE" "AFF3 WILD-TYPE" "AFF3 WILD-TYPE" 
    TCGA-FZ-5920     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-H6-8124 
"AFF3 WILD-TYPE" "AFF3 WILD-TYPE" "AFF3 WILD-TYPE" "AFF3 WILD-TYPE" 
    TCGA-H6-A45N     TCGA-H8-A6C1     TCGA-HZ-7289     TCGA-HZ-7918 
"AFF3 WILD-TYPE" "AFF3 WILD-TYPE"   "AFF3 MUTATED" "AFF3 WILD-TYPE" 
    TCGA-HZ-7919     TCGA-HZ-7922     TCGA-HZ-7923     TCGA-HZ-7924 
"AFF3 WILD-TYPE" "AFF3 WILD-TYPE" "AFF3 WILD-TYPE" "AFF3 WILD-TYPE" 
    TCGA-HZ-7925     TCGA-HZ-7926     TCGA-HZ-8001     TCGA-HZ-8002 
"AFF3 WILD-TYPE" "AFF3 WILD-TYPE" "AFF3 WILD-TYPE"   "AFF3 MUTATED" 
    TCGA-HZ-8003     TCGA-HZ-8005     TCGA-HZ-8315     TCGA-HZ-8317 
"AFF3 WILD-TYPE" "AFF3 WILD-TYPE" "AFF3 WILD-TYPE" "AFF3 WILD-TYPE" 
    TCGA-HZ-8636     TCGA-HZ-8638     TCGA-HZ-A49G     TCGA-HZ-A49H 
"AFF3 WILD-TYPE" "AFF3 WILD-TYPE"   "AFF3 MUTATED" "AFF3 WILD-TYPE" 
    TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-IB-7644     TCGA-IB-7645 
"AFF3 WILD-TYPE"   "AFF3 MUTATED" "AFF3 WILD-TYPE" "AFF3 WILD-TYPE" 
    TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7651 
"AFF3 WILD-TYPE" "AFF3 WILD-TYPE" "AFF3 WILD-TYPE"   "AFF3 MUTATED" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887 
"AFF3 WILD-TYPE" "AFF3 WILD-TYPE" "AFF3 WILD-TYPE" "AFF3 WILD-TYPE" 
    TCGA-IB-7888     TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891 
"AFF3 WILD-TYPE" "AFF3 WILD-TYPE" "AFF3 WILD-TYPE" "AFF3 WILD-TYPE" 
    TCGA-IB-7893     TCGA-IB-7897     TCGA-IB-8126     TCGA-IB-8127 
"AFF3 WILD-TYPE" "AFF3 WILD-TYPE" "AFF3 WILD-TYPE"   "AFF3 MUTATED" 
    TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS 
"AFF3 WILD-TYPE" "AFF3 WILD-TYPE" "AFF3 WILD-TYPE" "AFF3 WILD-TYPE" 
    TCGA-IB-A5ST     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
"AFF3 WILD-TYPE"   "AFF3 MUTATED"   "AFF3 MUTATED" "AFF3 WILD-TYPE" 
    TCGA-PZ-A5RE     TCGA-Q3-A5QY     TCGA-US-A779     TCGA-US-A77E 
  "AFF3 MUTATED" "AFF3 WILD-TYPE" "AFF3 WILD-TYPE" "AFF3 WILD-TYPE" 
    TCGA-US-A77J 
"AFF3 WILD-TYPE" 
[1] "hr=" "1.6"
D377V2, continuous
                vv
clus             STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  AFF3 MUTATED          0        0         0        10         0        0
  AFF3 WILD-TYPE        1        4        11        41         2        3
D377V3, multiclass
                vv
clus             T1+T2 T3+T4
  AFF3 MUTATED       1     9
  AFF3 WILD-TYPE     5    57
D377V4, multiclass
       clus
vv      AFF3 MUTATED AFF3 WILD-TYPE
  T1+T2            1              5
  T3+T4            9             57
D377V5, binary
                cls
clus              0  1
  AFF3 MUTATED    0 10
  AFF3 WILD-TYPE 17 44
[1] "tbl2"
                cls
clus             [,1] [,2]
  AFF3 MUTATED      0   10
  AFF3 WILD-TYPE   17   44
   clus
vv  AFF3 MUTATED AFF3 WILD-TYPE
  0            0             17
  1           10             44
                vv
clus             M0 M1 MX
  AFF3 MUTATED    4  0  6
  AFF3 WILD-TYPE 35  3 24
D377V6, multiclass
    clus
vv   AFF3 MUTATED AFF3 WILD-TYPE
  M0            4             35
  M1            0              3
  MX            6             24
D377V7, binary
                cls
clus              0  1
  AFF3 MUTATED    5  5
  AFF3 WILD-TYPE 31 31
[1] "tbl2"
                cls
clus             [,1] [,2]
  AFF3 MUTATED      5    5
  AFF3 WILD-TYPE   31   31
        clus
vv       AFF3 MUTATED AFF3 WILD-TYPE
  FEMALE            5             31
  MALE              5             31
                vv
clus             PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  AFF3 MUTATED                                     8
  AFF3 WILD-TYPE                                  57
                vv
clus             PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  AFF3 MUTATED                                       2
  AFF3 WILD-TYPE                                     2
                vv
clus             PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  AFF3 MUTATED                                                  0
  AFF3 WILD-TYPE                                                2
D377V8, multiclass
                                                  clus
vv                                                 AFF3 MUTATED AFF3 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                         8             57
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                       2              2
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA            0              2
D377V9, continuous
D377V10, continuous
                vv
clus             R0 R1 RX
  AFF3 MUTATED    2  5  1
  AFF3 WILD-TYPE 40 19  1
D377V11, multiclass
    clus
vv   AFF3 MUTATED AFF3 WILD-TYPE
  R0            2             40
  R1            5             19
  RX            1              1
D377V12, continuous

Clustering(378) Variable = MEGF10 MUTATION ANALYSIS
D378V1, survival
                  sevent
clus2               0  1
  MEGF10 MUTATED    1  5
  MEGF10 WILD-TYPE 39 24
  MEGF10 MUTATED MEGF10 WILD-TYPE 
               6               63 
  MEGF10 MUTATED MEGF10 WILD-TYPE 
               5               24 
$`MEGF10 MUTATED`
TCGA-F2-6879 TCGA-HZ-8005 TCGA-HZ-A49H TCGA-IB-7651 TCGA-IB-7893 TCGA-IB-7897 
       10.98         3.95         0.95        19.82         3.85        15.98 

$`MEGF10 WILD-TYPE`
TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H TCGA-FB-A4P5 
        9.70        11.84         7.10         5.03        19.27         0.13 
TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR TCGA-FZ-5920 
       11.93        12.66         2.47         0.03         5.46         2.01 
TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7289 
       36.20        20.81        12.89         7.66        13.02         7.89 
TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 
        0.92         0.66         0.13         0.26        12.13        11.87 
TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8315 TCGA-HZ-8317 
        0.26         0.62         0.79         0.69         0.92         0.53 
TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 
        0.16         2.99         0.76         6.38         1.51        11.41 
TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7652 TCGA-IB-7885 
       49.38         4.77        21.90        15.35        15.65        27.98 
TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 
        4.04         3.62        43.79        15.81        19.66        16.04 
TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS 
        0.56        17.16        10.82         9.86         7.20        15.12 
TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W TCGA-PZ-A5RE TCGA-Q3-A5QY 
        0.26         1.35         4.18         3.62         8.12        13.68 
TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
       16.80        14.14        18.67 

  MEGF10 MUTATED MEGF10 WILD-TYPE 
            0.95             0.03 
  MEGF10 MUTATED MEGF10 WILD-TYPE 
           19.82            49.38 
  MEGF10 MUTATED MEGF10 WILD-TYPE 
           7.465            7.660 
[1] "0.9 - 19.8 (7.5)" "0.0 - 49.4 (7.7)"
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
  "MEGF10 MUTATED" "MEGF10 WILD-TYPE" "MEGF10 WILD-TYPE" "MEGF10 WILD-TYPE" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"MEGF10 WILD-TYPE" "MEGF10 WILD-TYPE" "MEGF10 WILD-TYPE" "MEGF10 WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
"MEGF10 WILD-TYPE" "MEGF10 WILD-TYPE" "MEGF10 WILD-TYPE" "MEGF10 WILD-TYPE" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"MEGF10 WILD-TYPE" "MEGF10 WILD-TYPE" "MEGF10 WILD-TYPE" "MEGF10 WILD-TYPE" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
"MEGF10 WILD-TYPE" "MEGF10 WILD-TYPE" "MEGF10 WILD-TYPE" "MEGF10 WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
"MEGF10 WILD-TYPE" "MEGF10 WILD-TYPE" "MEGF10 WILD-TYPE" "MEGF10 WILD-TYPE" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"MEGF10 WILD-TYPE" "MEGF10 WILD-TYPE" "MEGF10 WILD-TYPE" "MEGF10 WILD-TYPE" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
"MEGF10 WILD-TYPE"   "MEGF10 MUTATED" "MEGF10 WILD-TYPE" "MEGF10 WILD-TYPE" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
"MEGF10 WILD-TYPE" "MEGF10 WILD-TYPE" "MEGF10 WILD-TYPE"   "MEGF10 MUTATED" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
"MEGF10 WILD-TYPE" "MEGF10 WILD-TYPE" "MEGF10 WILD-TYPE" "MEGF10 WILD-TYPE" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
"MEGF10 WILD-TYPE" "MEGF10 WILD-TYPE" "MEGF10 WILD-TYPE"   "MEGF10 MUTATED" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
"MEGF10 WILD-TYPE" "MEGF10 WILD-TYPE" "MEGF10 WILD-TYPE" "MEGF10 WILD-TYPE" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
"MEGF10 WILD-TYPE" "MEGF10 WILD-TYPE" "MEGF10 WILD-TYPE" "MEGF10 WILD-TYPE" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
  "MEGF10 MUTATED"   "MEGF10 MUTATED" "MEGF10 WILD-TYPE" "MEGF10 WILD-TYPE" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"MEGF10 WILD-TYPE" "MEGF10 WILD-TYPE" "MEGF10 WILD-TYPE" "MEGF10 WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"MEGF10 WILD-TYPE" "MEGF10 WILD-TYPE" "MEGF10 WILD-TYPE" "MEGF10 WILD-TYPE" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
"MEGF10 WILD-TYPE" "MEGF10 WILD-TYPE" "MEGF10 WILD-TYPE" "MEGF10 WILD-TYPE" 
      TCGA-US-A77J 
"MEGF10 WILD-TYPE" 
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
  "MEGF10 MUTATED" "MEGF10 WILD-TYPE" "MEGF10 WILD-TYPE" "MEGF10 WILD-TYPE" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"MEGF10 WILD-TYPE" "MEGF10 WILD-TYPE" "MEGF10 WILD-TYPE" "MEGF10 WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
"MEGF10 WILD-TYPE" "MEGF10 WILD-TYPE" "MEGF10 WILD-TYPE" "MEGF10 WILD-TYPE" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"MEGF10 WILD-TYPE" "MEGF10 WILD-TYPE" "MEGF10 WILD-TYPE" "MEGF10 WILD-TYPE" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
"MEGF10 WILD-TYPE" "MEGF10 WILD-TYPE" "MEGF10 WILD-TYPE" "MEGF10 WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
"MEGF10 WILD-TYPE" "MEGF10 WILD-TYPE" "MEGF10 WILD-TYPE" "MEGF10 WILD-TYPE" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"MEGF10 WILD-TYPE" "MEGF10 WILD-TYPE" "MEGF10 WILD-TYPE" "MEGF10 WILD-TYPE" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
"MEGF10 WILD-TYPE"   "MEGF10 MUTATED" "MEGF10 WILD-TYPE" "MEGF10 WILD-TYPE" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
"MEGF10 WILD-TYPE" "MEGF10 WILD-TYPE" "MEGF10 WILD-TYPE"   "MEGF10 MUTATED" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
"MEGF10 WILD-TYPE" "MEGF10 WILD-TYPE" "MEGF10 WILD-TYPE" "MEGF10 WILD-TYPE" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
"MEGF10 WILD-TYPE" "MEGF10 WILD-TYPE" "MEGF10 WILD-TYPE"   "MEGF10 MUTATED" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
"MEGF10 WILD-TYPE" "MEGF10 WILD-TYPE" "MEGF10 WILD-TYPE" "MEGF10 WILD-TYPE" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
"MEGF10 WILD-TYPE" "MEGF10 WILD-TYPE" "MEGF10 WILD-TYPE" "MEGF10 WILD-TYPE" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
  "MEGF10 MUTATED"   "MEGF10 MUTATED" "MEGF10 WILD-TYPE" "MEGF10 WILD-TYPE" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"MEGF10 WILD-TYPE" "MEGF10 WILD-TYPE" "MEGF10 WILD-TYPE" "MEGF10 WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"MEGF10 WILD-TYPE" "MEGF10 WILD-TYPE" "MEGF10 WILD-TYPE" "MEGF10 WILD-TYPE" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
"MEGF10 WILD-TYPE" "MEGF10 WILD-TYPE" "MEGF10 WILD-TYPE" "MEGF10 WILD-TYPE" 
      TCGA-US-A77J 
"MEGF10 WILD-TYPE" 
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
  "MEGF10 MUTATED" "MEGF10 WILD-TYPE" "MEGF10 WILD-TYPE" "MEGF10 WILD-TYPE" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"MEGF10 WILD-TYPE" "MEGF10 WILD-TYPE" "MEGF10 WILD-TYPE" "MEGF10 WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
"MEGF10 WILD-TYPE" "MEGF10 WILD-TYPE" "MEGF10 WILD-TYPE" "MEGF10 WILD-TYPE" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"MEGF10 WILD-TYPE" "MEGF10 WILD-TYPE" "MEGF10 WILD-TYPE" "MEGF10 WILD-TYPE" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
"MEGF10 WILD-TYPE" "MEGF10 WILD-TYPE" "MEGF10 WILD-TYPE" "MEGF10 WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
"MEGF10 WILD-TYPE" "MEGF10 WILD-TYPE" "MEGF10 WILD-TYPE" "MEGF10 WILD-TYPE" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"MEGF10 WILD-TYPE" "MEGF10 WILD-TYPE" "MEGF10 WILD-TYPE" "MEGF10 WILD-TYPE" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
"MEGF10 WILD-TYPE"   "MEGF10 MUTATED" "MEGF10 WILD-TYPE" "MEGF10 WILD-TYPE" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
"MEGF10 WILD-TYPE" "MEGF10 WILD-TYPE" "MEGF10 WILD-TYPE"   "MEGF10 MUTATED" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
"MEGF10 WILD-TYPE" "MEGF10 WILD-TYPE" "MEGF10 WILD-TYPE" "MEGF10 WILD-TYPE" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
"MEGF10 WILD-TYPE" "MEGF10 WILD-TYPE" "MEGF10 WILD-TYPE"   "MEGF10 MUTATED" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
"MEGF10 WILD-TYPE" "MEGF10 WILD-TYPE" "MEGF10 WILD-TYPE" "MEGF10 WILD-TYPE" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
"MEGF10 WILD-TYPE" "MEGF10 WILD-TYPE" "MEGF10 WILD-TYPE" "MEGF10 WILD-TYPE" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
  "MEGF10 MUTATED"   "MEGF10 MUTATED" "MEGF10 WILD-TYPE" "MEGF10 WILD-TYPE" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"MEGF10 WILD-TYPE" "MEGF10 WILD-TYPE" "MEGF10 WILD-TYPE" "MEGF10 WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"MEGF10 WILD-TYPE" "MEGF10 WILD-TYPE" "MEGF10 WILD-TYPE" "MEGF10 WILD-TYPE" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
"MEGF10 WILD-TYPE" "MEGF10 WILD-TYPE" "MEGF10 WILD-TYPE" "MEGF10 WILD-TYPE" 
      TCGA-US-A77J 
"MEGF10 WILD-TYPE" 
[1] "hr=" "2.4"
D378V2, continuous
                  vv
clus               STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  MEGF10 MUTATED          0        1         1         5         0        0
  MEGF10 WILD-TYPE        1        3        10        46         2        3
D378V3, multiclass
                  vv
clus               T1+T2 T3+T4
  MEGF10 MUTATED       1     6
  MEGF10 WILD-TYPE     5    60
D378V4, multiclass
       clus
vv      MEGF10 MUTATED MEGF10 WILD-TYPE
  T1+T2              1                5
  T3+T4              6               60
D378V5, binary
                  cls
clus                0  1
  MEGF10 MUTATED    2  5
  MEGF10 WILD-TYPE 15 49
[1] "tbl2"
                  cls
clus               [,1] [,2]
  MEGF10 MUTATED      2    5
  MEGF10 WILD-TYPE   15   49
   clus
vv  MEGF10 MUTATED MEGF10 WILD-TYPE
  0              2               15
  1              5               49
                  vv
clus               M0 M1 MX
  MEGF10 MUTATED    4  0  3
  MEGF10 WILD-TYPE 35  3 27
D378V6, multiclass
    clus
vv   MEGF10 MUTATED MEGF10 WILD-TYPE
  M0              4               35
  M1              0                3
  MX              3               27
D378V7, binary
                  cls
clus                0  1
  MEGF10 MUTATED    3  4
  MEGF10 WILD-TYPE 33 32
[1] "tbl2"
                  cls
clus               [,1] [,2]
  MEGF10 MUTATED      3    4
  MEGF10 WILD-TYPE   33   32
        clus
vv       MEGF10 MUTATED MEGF10 WILD-TYPE
  FEMALE              3               33
  MALE                4               32
                  vv
clus               PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  MEGF10 MUTATED                                     6
  MEGF10 WILD-TYPE                                  59
                  vv
clus               PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  MEGF10 MUTATED                                       0
  MEGF10 WILD-TYPE                                     4
                  vv
clus               PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  MEGF10 MUTATED                                                  0
  MEGF10 WILD-TYPE                                                2
D378V8, multiclass
                                                  clus
vv                                                 MEGF10 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                           6
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                         0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA              0
                                                  clus
vv                                                 MEGF10 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                            59
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                           4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                2
D378V9, continuous
[1] "Remove cluster labels:" "MEGF10 MUTATED"        
clus
  MEGF10 MUTATED MEGF10 WILD-TYPE 
               1               21 
      TCGA-F2-6880       TCGA-FB-A4P5       TCGA-FB-A4P6       TCGA-FB-A5VM 
"MEGF10 WILD-TYPE" "MEGF10 WILD-TYPE" "MEGF10 WILD-TYPE" "MEGF10 WILD-TYPE" 
      TCGA-FB-A78T       TCGA-FB-A7DR       TCGA-H6-8124       TCGA-H6-A45N 
"MEGF10 WILD-TYPE" "MEGF10 WILD-TYPE" "MEGF10 WILD-TYPE" "MEGF10 WILD-TYPE" 
      TCGA-H8-A6C1       TCGA-IB-7644       TCGA-IB-7649       TCGA-IB-7885 
"MEGF10 WILD-TYPE" "MEGF10 WILD-TYPE" "MEGF10 WILD-TYPE" "MEGF10 WILD-TYPE" 
      TCGA-IB-7886       TCGA-IB-7887       TCGA-IB-7891       TCGA-IB-8126 
"MEGF10 WILD-TYPE" "MEGF10 WILD-TYPE" "MEGF10 WILD-TYPE" "MEGF10 WILD-TYPE" 
      TCGA-IB-8127       TCGA-IB-A5SS       TCGA-IB-A6UG       TCGA-LB-A7SX 
"MEGF10 WILD-TYPE" "MEGF10 WILD-TYPE" "MEGF10 WILD-TYPE" "MEGF10 WILD-TYPE" 
      TCGA-OE-A75W 
"MEGF10 WILD-TYPE" 
D378V10, continuous
[1] "Remove cluster labels:" "MEGF10 MUTATED"        
clus
  MEGF10 MUTATED MEGF10 WILD-TYPE 
               1               18 
      TCGA-FB-A4P5       TCGA-FB-A4P6       TCGA-FB-A5VM       TCGA-FB-A78T 
"MEGF10 WILD-TYPE" "MEGF10 WILD-TYPE" "MEGF10 WILD-TYPE" "MEGF10 WILD-TYPE" 
      TCGA-FB-A7DR       TCGA-H6-8124       TCGA-H8-A6C1       TCGA-IB-7644 
"MEGF10 WILD-TYPE" "MEGF10 WILD-TYPE" "MEGF10 WILD-TYPE" "MEGF10 WILD-TYPE" 
      TCGA-IB-7649       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7891 
"MEGF10 WILD-TYPE" "MEGF10 WILD-TYPE" "MEGF10 WILD-TYPE" "MEGF10 WILD-TYPE" 
      TCGA-IB-8126       TCGA-IB-8127       TCGA-IB-A5SS       TCGA-IB-A6UG 
"MEGF10 WILD-TYPE" "MEGF10 WILD-TYPE" "MEGF10 WILD-TYPE" "MEGF10 WILD-TYPE" 
      TCGA-LB-A7SX       TCGA-OE-A75W 
"MEGF10 WILD-TYPE" "MEGF10 WILD-TYPE" 
                  vv
clus               R0 R1 RX
  MEGF10 MUTATED    6  1  0
  MEGF10 WILD-TYPE 36 23  2
D378V11, multiclass
    clus
vv   MEGF10 MUTATED MEGF10 WILD-TYPE
  R0              6               36
  R1              1               23
  RX              0                2
D378V12, continuous

Clustering(379) Variable = IFT46 MUTATION ANALYSIS
D379V1, survival
                 sevent
clus2              0  1
  IFT46 MUTATED    2  3
  IFT46 WILD-TYPE 38 26
  IFT46 MUTATED IFT46 WILD-TYPE 
              5              64 
  IFT46 MUTATED IFT46 WILD-TYPE 
              3              26 
$`IFT46 MUTATED`
TCGA-FB-A4P6 TCGA-FZ-5923 TCGA-IB-7651 TCGA-IB-A5SO TCGA-US-A77E 
       11.93        20.81        19.82        10.82        14.14 

$`IFT46 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P5 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR TCGA-FZ-5920 
        0.13        12.66         2.47         0.03         5.46         2.01 
TCGA-FZ-5922 TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7289 TCGA-HZ-7918 
       36.20        12.89         7.66        13.02         7.89         0.92 
TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 
        0.66         0.13         0.26        12.13        11.87         0.26 
TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 
        0.62         0.79         0.69         3.95         0.92         0.53 
TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK 
        0.16         2.99         0.76         0.95         6.38         1.51 
TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7652 
       11.41        49.38         4.77        21.90        15.35        15.65 
TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 
       27.98         4.04         3.62        43.79        15.81        19.66 
TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SP 
       16.04         3.85        15.98         0.56        17.16         9.86 
TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W 
        7.20        15.12         0.26         1.35         4.18         3.62 
TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77J 
        8.12        13.68        16.80        18.67 

  IFT46 MUTATED IFT46 WILD-TYPE 
          10.82            0.03 
  IFT46 MUTATED IFT46 WILD-TYPE 
          20.81           49.38 
  IFT46 MUTATED IFT46 WILD-TYPE 
          14.14            6.74 
[1] "10.8 - 20.8 (14.1)" "0.0 - 49.4 (6.7)"  
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"IFT46 WILD-TYPE" "IFT46 WILD-TYPE" "IFT46 WILD-TYPE" "IFT46 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"IFT46 WILD-TYPE" "IFT46 WILD-TYPE" "IFT46 WILD-TYPE"   "IFT46 MUTATED" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"IFT46 WILD-TYPE" "IFT46 WILD-TYPE" "IFT46 WILD-TYPE" "IFT46 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"IFT46 WILD-TYPE" "IFT46 WILD-TYPE"   "IFT46 MUTATED" "IFT46 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"IFT46 WILD-TYPE" "IFT46 WILD-TYPE" "IFT46 WILD-TYPE" "IFT46 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"IFT46 WILD-TYPE" "IFT46 WILD-TYPE" "IFT46 WILD-TYPE" "IFT46 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"IFT46 WILD-TYPE" "IFT46 WILD-TYPE" "IFT46 WILD-TYPE" "IFT46 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"IFT46 WILD-TYPE" "IFT46 WILD-TYPE" "IFT46 WILD-TYPE" "IFT46 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"IFT46 WILD-TYPE" "IFT46 WILD-TYPE" "IFT46 WILD-TYPE" "IFT46 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"IFT46 WILD-TYPE" "IFT46 WILD-TYPE" "IFT46 WILD-TYPE" "IFT46 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"IFT46 WILD-TYPE" "IFT46 WILD-TYPE" "IFT46 WILD-TYPE"   "IFT46 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"IFT46 WILD-TYPE" "IFT46 WILD-TYPE" "IFT46 WILD-TYPE" "IFT46 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"IFT46 WILD-TYPE" "IFT46 WILD-TYPE" "IFT46 WILD-TYPE" "IFT46 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"IFT46 WILD-TYPE" "IFT46 WILD-TYPE" "IFT46 WILD-TYPE" "IFT46 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
  "IFT46 MUTATED" "IFT46 WILD-TYPE" "IFT46 WILD-TYPE" "IFT46 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"IFT46 WILD-TYPE" "IFT46 WILD-TYPE" "IFT46 WILD-TYPE" "IFT46 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"IFT46 WILD-TYPE" "IFT46 WILD-TYPE" "IFT46 WILD-TYPE"   "IFT46 MUTATED" 
     TCGA-US-A77J 
"IFT46 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"IFT46 WILD-TYPE" "IFT46 WILD-TYPE" "IFT46 WILD-TYPE" "IFT46 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"IFT46 WILD-TYPE" "IFT46 WILD-TYPE" "IFT46 WILD-TYPE"   "IFT46 MUTATED" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"IFT46 WILD-TYPE" "IFT46 WILD-TYPE" "IFT46 WILD-TYPE" "IFT46 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"IFT46 WILD-TYPE" "IFT46 WILD-TYPE"   "IFT46 MUTATED" "IFT46 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"IFT46 WILD-TYPE" "IFT46 WILD-TYPE" "IFT46 WILD-TYPE" "IFT46 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"IFT46 WILD-TYPE" "IFT46 WILD-TYPE" "IFT46 WILD-TYPE" "IFT46 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"IFT46 WILD-TYPE" "IFT46 WILD-TYPE" "IFT46 WILD-TYPE" "IFT46 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"IFT46 WILD-TYPE" "IFT46 WILD-TYPE" "IFT46 WILD-TYPE" "IFT46 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"IFT46 WILD-TYPE" "IFT46 WILD-TYPE" "IFT46 WILD-TYPE" "IFT46 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"IFT46 WILD-TYPE" "IFT46 WILD-TYPE" "IFT46 WILD-TYPE" "IFT46 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"IFT46 WILD-TYPE" "IFT46 WILD-TYPE" "IFT46 WILD-TYPE"   "IFT46 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"IFT46 WILD-TYPE" "IFT46 WILD-TYPE" "IFT46 WILD-TYPE" "IFT46 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"IFT46 WILD-TYPE" "IFT46 WILD-TYPE" "IFT46 WILD-TYPE" "IFT46 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"IFT46 WILD-TYPE" "IFT46 WILD-TYPE" "IFT46 WILD-TYPE" "IFT46 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
  "IFT46 MUTATED" "IFT46 WILD-TYPE" "IFT46 WILD-TYPE" "IFT46 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"IFT46 WILD-TYPE" "IFT46 WILD-TYPE" "IFT46 WILD-TYPE" "IFT46 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"IFT46 WILD-TYPE" "IFT46 WILD-TYPE" "IFT46 WILD-TYPE"   "IFT46 MUTATED" 
     TCGA-US-A77J 
"IFT46 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"IFT46 WILD-TYPE" "IFT46 WILD-TYPE" "IFT46 WILD-TYPE" "IFT46 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"IFT46 WILD-TYPE" "IFT46 WILD-TYPE" "IFT46 WILD-TYPE"   "IFT46 MUTATED" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"IFT46 WILD-TYPE" "IFT46 WILD-TYPE" "IFT46 WILD-TYPE" "IFT46 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"IFT46 WILD-TYPE" "IFT46 WILD-TYPE"   "IFT46 MUTATED" "IFT46 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"IFT46 WILD-TYPE" "IFT46 WILD-TYPE" "IFT46 WILD-TYPE" "IFT46 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"IFT46 WILD-TYPE" "IFT46 WILD-TYPE" "IFT46 WILD-TYPE" "IFT46 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"IFT46 WILD-TYPE" "IFT46 WILD-TYPE" "IFT46 WILD-TYPE" "IFT46 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"IFT46 WILD-TYPE" "IFT46 WILD-TYPE" "IFT46 WILD-TYPE" "IFT46 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"IFT46 WILD-TYPE" "IFT46 WILD-TYPE" "IFT46 WILD-TYPE" "IFT46 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"IFT46 WILD-TYPE" "IFT46 WILD-TYPE" "IFT46 WILD-TYPE" "IFT46 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"IFT46 WILD-TYPE" "IFT46 WILD-TYPE" "IFT46 WILD-TYPE"   "IFT46 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"IFT46 WILD-TYPE" "IFT46 WILD-TYPE" "IFT46 WILD-TYPE" "IFT46 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"IFT46 WILD-TYPE" "IFT46 WILD-TYPE" "IFT46 WILD-TYPE" "IFT46 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"IFT46 WILD-TYPE" "IFT46 WILD-TYPE" "IFT46 WILD-TYPE" "IFT46 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
  "IFT46 MUTATED" "IFT46 WILD-TYPE" "IFT46 WILD-TYPE" "IFT46 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"IFT46 WILD-TYPE" "IFT46 WILD-TYPE" "IFT46 WILD-TYPE" "IFT46 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"IFT46 WILD-TYPE" "IFT46 WILD-TYPE" "IFT46 WILD-TYPE"   "IFT46 MUTATED" 
     TCGA-US-A77J 
"IFT46 WILD-TYPE" 
[1] "hr=" "1.2"
D379V2, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  IFT46 MUTATED          0        1         0         4         0        1
  IFT46 WILD-TYPE        1        3        11        47         2        2
D379V3, multiclass
                 vv
clus              T1+T2 T3+T4
  IFT46 MUTATED       1     5
  IFT46 WILD-TYPE     5    61
D379V4, multiclass
       clus
vv      IFT46 MUTATED IFT46 WILD-TYPE
  T1+T2             1               5
  T3+T4             5              61
D379V5, binary
                 cls
clus               0  1
  IFT46 MUTATED    1  5
  IFT46 WILD-TYPE 16 49
[1] "tbl2"
                 cls
clus              [,1] [,2]
  IFT46 MUTATED      1    5
  IFT46 WILD-TYPE   16   49
   clus
vv  IFT46 MUTATED IFT46 WILD-TYPE
  0             1              16
  1             5              49
                 vv
clus              M0 M1 MX
  IFT46 MUTATED    2  1  3
  IFT46 WILD-TYPE 37  2 27
D379V6, multiclass
    clus
vv   IFT46 MUTATED IFT46 WILD-TYPE
  M0             2              37
  M1             1               2
  MX             3              27
D379V7, binary
                 cls
clus               0  1
  IFT46 MUTATED    1  5
  IFT46 WILD-TYPE 35 31
[1] "tbl2"
                 cls
clus              [,1] [,2]
  IFT46 MUTATED      1    5
  IFT46 WILD-TYPE   35   31
        clus
vv       IFT46 MUTATED IFT46 WILD-TYPE
  FEMALE             1              35
  MALE               5              31
                 vv
clus              PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  IFT46 MUTATED                                     6
  IFT46 WILD-TYPE                                  59
                 vv
clus              PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  IFT46 MUTATED                                       0
  IFT46 WILD-TYPE                                     4
                 vv
clus              PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  IFT46 MUTATED                                                  0
  IFT46 WILD-TYPE                                                2
D379V8, multiclass
                                                  clus
vv                                                 IFT46 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                          6
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                        0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA             0
                                                  clus
vv                                                 IFT46 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                           59
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                          4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA               2
D379V9, continuous
[1] "Remove cluster labels:" "IFT46 MUTATED"         
clus
  IFT46 MUTATED IFT46 WILD-TYPE 
              2              20 
     TCGA-F2-6880      TCGA-FB-A4P5      TCGA-FB-A5VM      TCGA-FB-A78T 
"IFT46 WILD-TYPE" "IFT46 WILD-TYPE" "IFT46 WILD-TYPE" "IFT46 WILD-TYPE" 
     TCGA-FB-A7DR      TCGA-H6-8124      TCGA-H6-A45N      TCGA-H8-A6C1 
"IFT46 WILD-TYPE" "IFT46 WILD-TYPE" "IFT46 WILD-TYPE" "IFT46 WILD-TYPE" 
     TCGA-IB-7644      TCGA-IB-7649      TCGA-IB-7885      TCGA-IB-7886 
"IFT46 WILD-TYPE" "IFT46 WILD-TYPE" "IFT46 WILD-TYPE" "IFT46 WILD-TYPE" 
     TCGA-IB-7887      TCGA-IB-7891      TCGA-IB-8126      TCGA-IB-8127 
"IFT46 WILD-TYPE" "IFT46 WILD-TYPE" "IFT46 WILD-TYPE" "IFT46 WILD-TYPE" 
     TCGA-IB-A5SS      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"IFT46 WILD-TYPE" "IFT46 WILD-TYPE" "IFT46 WILD-TYPE" "IFT46 WILD-TYPE" 
D379V10, continuous
[1] "Remove cluster labels:" "IFT46 MUTATED"         
clus
  IFT46 MUTATED IFT46 WILD-TYPE 
              2              17 
     TCGA-FB-A4P5      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"IFT46 WILD-TYPE" "IFT46 WILD-TYPE" "IFT46 WILD-TYPE" "IFT46 WILD-TYPE" 
     TCGA-H6-8124      TCGA-H8-A6C1      TCGA-IB-7644      TCGA-IB-7649 
"IFT46 WILD-TYPE" "IFT46 WILD-TYPE" "IFT46 WILD-TYPE" "IFT46 WILD-TYPE" 
     TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7891      TCGA-IB-8126 
"IFT46 WILD-TYPE" "IFT46 WILD-TYPE" "IFT46 WILD-TYPE" "IFT46 WILD-TYPE" 
     TCGA-IB-8127      TCGA-IB-A5SS      TCGA-IB-A6UG      TCGA-LB-A7SX 
"IFT46 WILD-TYPE" "IFT46 WILD-TYPE" "IFT46 WILD-TYPE" "IFT46 WILD-TYPE" 
     TCGA-OE-A75W 
"IFT46 WILD-TYPE" 
                 vv
clus              R0 R1 RX
  IFT46 MUTATED    4  1  0
  IFT46 WILD-TYPE 38 23  2
D379V11, multiclass
    clus
vv   IFT46 MUTATED IFT46 WILD-TYPE
  R0             4              38
  R1             1              23
  RX             0               2
D379V12, continuous

Clustering(380) Variable = SRGAP3 MUTATION ANALYSIS
D380V1, survival
                  sevent
clus2               0  1
  SRGAP3 MUTATED    1  4
  SRGAP3 WILD-TYPE 39 25
  SRGAP3 MUTATED SRGAP3 WILD-TYPE 
               5               64 
  SRGAP3 MUTATED SRGAP3 WILD-TYPE 
               4               25 
$`SRGAP3 MUTATED`
TCGA-HZ-8003 TCGA-IB-7645 TCGA-IB-7651 TCGA-IB-7893 TCGA-IB-7897 
        0.69        49.38        19.82         3.85        15.98 

$`SRGAP3 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P5 TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR 
        0.13        11.93        12.66         2.47         0.03         5.46 
TCGA-FZ-5920 TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 
        2.01        36.20        20.81        12.89         7.66        13.02 
TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 
        7.89         0.92         0.66         0.13         0.26        12.13 
TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8005 TCGA-HZ-8315 
       11.87         0.26         0.62         0.79         3.95         0.92 
TCGA-HZ-8317 TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH 
        0.53         0.16         2.99         0.76         0.95         6.38 
TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7652 
        1.51        11.41         4.77        21.90        15.35        15.65 
TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 
       27.98         4.04         3.62        43.79        15.81        19.66 
TCGA-IB-7891 TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ 
       16.04         0.56        17.16        10.82         9.86         7.20 
TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W TCGA-PZ-A5RE 
       15.12         0.26         1.35         4.18         3.62         8.12 
TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
       13.68        16.80        14.14        18.67 

  SRGAP3 MUTATED SRGAP3 WILD-TYPE 
            0.69             0.03 
  SRGAP3 MUTATED SRGAP3 WILD-TYPE 
           49.38            43.79 
  SRGAP3 MUTATED SRGAP3 WILD-TYPE 
           15.98             7.43 
[1] "0.7 - 49.4 (16.0)" "0.0 - 43.8 (7.4)" 
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
"SRGAP3 WILD-TYPE" "SRGAP3 WILD-TYPE" "SRGAP3 WILD-TYPE" "SRGAP3 WILD-TYPE" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"SRGAP3 WILD-TYPE" "SRGAP3 WILD-TYPE" "SRGAP3 WILD-TYPE" "SRGAP3 WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
"SRGAP3 WILD-TYPE" "SRGAP3 WILD-TYPE" "SRGAP3 WILD-TYPE" "SRGAP3 WILD-TYPE" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"SRGAP3 WILD-TYPE" "SRGAP3 WILD-TYPE" "SRGAP3 WILD-TYPE" "SRGAP3 WILD-TYPE" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
"SRGAP3 WILD-TYPE" "SRGAP3 WILD-TYPE" "SRGAP3 WILD-TYPE" "SRGAP3 WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
"SRGAP3 WILD-TYPE" "SRGAP3 WILD-TYPE" "SRGAP3 WILD-TYPE" "SRGAP3 WILD-TYPE" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"SRGAP3 WILD-TYPE" "SRGAP3 WILD-TYPE" "SRGAP3 WILD-TYPE" "SRGAP3 WILD-TYPE" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
  "SRGAP3 MUTATED" "SRGAP3 WILD-TYPE" "SRGAP3 WILD-TYPE" "SRGAP3 WILD-TYPE" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
"SRGAP3 WILD-TYPE" "SRGAP3 WILD-TYPE" "SRGAP3 WILD-TYPE" "SRGAP3 WILD-TYPE" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
"SRGAP3 WILD-TYPE" "SRGAP3 WILD-TYPE" "SRGAP3 WILD-TYPE"   "SRGAP3 MUTATED" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
"SRGAP3 WILD-TYPE" "SRGAP3 WILD-TYPE" "SRGAP3 WILD-TYPE"   "SRGAP3 MUTATED" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
"SRGAP3 WILD-TYPE" "SRGAP3 WILD-TYPE" "SRGAP3 WILD-TYPE" "SRGAP3 WILD-TYPE" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
"SRGAP3 WILD-TYPE" "SRGAP3 WILD-TYPE" "SRGAP3 WILD-TYPE" "SRGAP3 WILD-TYPE" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
  "SRGAP3 MUTATED"   "SRGAP3 MUTATED" "SRGAP3 WILD-TYPE" "SRGAP3 WILD-TYPE" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"SRGAP3 WILD-TYPE" "SRGAP3 WILD-TYPE" "SRGAP3 WILD-TYPE" "SRGAP3 WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"SRGAP3 WILD-TYPE" "SRGAP3 WILD-TYPE" "SRGAP3 WILD-TYPE" "SRGAP3 WILD-TYPE" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
"SRGAP3 WILD-TYPE" "SRGAP3 WILD-TYPE" "SRGAP3 WILD-TYPE" "SRGAP3 WILD-TYPE" 
      TCGA-US-A77J 
"SRGAP3 WILD-TYPE" 
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
"SRGAP3 WILD-TYPE" "SRGAP3 WILD-TYPE" "SRGAP3 WILD-TYPE" "SRGAP3 WILD-TYPE" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"SRGAP3 WILD-TYPE" "SRGAP3 WILD-TYPE" "SRGAP3 WILD-TYPE" "SRGAP3 WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
"SRGAP3 WILD-TYPE" "SRGAP3 WILD-TYPE" "SRGAP3 WILD-TYPE" "SRGAP3 WILD-TYPE" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"SRGAP3 WILD-TYPE" "SRGAP3 WILD-TYPE" "SRGAP3 WILD-TYPE" "SRGAP3 WILD-TYPE" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
"SRGAP3 WILD-TYPE" "SRGAP3 WILD-TYPE" "SRGAP3 WILD-TYPE" "SRGAP3 WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
"SRGAP3 WILD-TYPE" "SRGAP3 WILD-TYPE" "SRGAP3 WILD-TYPE" "SRGAP3 WILD-TYPE" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"SRGAP3 WILD-TYPE" "SRGAP3 WILD-TYPE" "SRGAP3 WILD-TYPE" "SRGAP3 WILD-TYPE" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
  "SRGAP3 MUTATED" "SRGAP3 WILD-TYPE" "SRGAP3 WILD-TYPE" "SRGAP3 WILD-TYPE" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
"SRGAP3 WILD-TYPE" "SRGAP3 WILD-TYPE" "SRGAP3 WILD-TYPE" "SRGAP3 WILD-TYPE" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
"SRGAP3 WILD-TYPE" "SRGAP3 WILD-TYPE" "SRGAP3 WILD-TYPE"   "SRGAP3 MUTATED" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
"SRGAP3 WILD-TYPE" "SRGAP3 WILD-TYPE" "SRGAP3 WILD-TYPE"   "SRGAP3 MUTATED" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
"SRGAP3 WILD-TYPE" "SRGAP3 WILD-TYPE" "SRGAP3 WILD-TYPE" "SRGAP3 WILD-TYPE" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
"SRGAP3 WILD-TYPE" "SRGAP3 WILD-TYPE" "SRGAP3 WILD-TYPE" "SRGAP3 WILD-TYPE" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
  "SRGAP3 MUTATED"   "SRGAP3 MUTATED" "SRGAP3 WILD-TYPE" "SRGAP3 WILD-TYPE" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"SRGAP3 WILD-TYPE" "SRGAP3 WILD-TYPE" "SRGAP3 WILD-TYPE" "SRGAP3 WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"SRGAP3 WILD-TYPE" "SRGAP3 WILD-TYPE" "SRGAP3 WILD-TYPE" "SRGAP3 WILD-TYPE" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
"SRGAP3 WILD-TYPE" "SRGAP3 WILD-TYPE" "SRGAP3 WILD-TYPE" "SRGAP3 WILD-TYPE" 
      TCGA-US-A77J 
"SRGAP3 WILD-TYPE" 
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
"SRGAP3 WILD-TYPE" "SRGAP3 WILD-TYPE" "SRGAP3 WILD-TYPE" "SRGAP3 WILD-TYPE" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"SRGAP3 WILD-TYPE" "SRGAP3 WILD-TYPE" "SRGAP3 WILD-TYPE" "SRGAP3 WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
"SRGAP3 WILD-TYPE" "SRGAP3 WILD-TYPE" "SRGAP3 WILD-TYPE" "SRGAP3 WILD-TYPE" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"SRGAP3 WILD-TYPE" "SRGAP3 WILD-TYPE" "SRGAP3 WILD-TYPE" "SRGAP3 WILD-TYPE" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
"SRGAP3 WILD-TYPE" "SRGAP3 WILD-TYPE" "SRGAP3 WILD-TYPE" "SRGAP3 WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
"SRGAP3 WILD-TYPE" "SRGAP3 WILD-TYPE" "SRGAP3 WILD-TYPE" "SRGAP3 WILD-TYPE" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"SRGAP3 WILD-TYPE" "SRGAP3 WILD-TYPE" "SRGAP3 WILD-TYPE" "SRGAP3 WILD-TYPE" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
  "SRGAP3 MUTATED" "SRGAP3 WILD-TYPE" "SRGAP3 WILD-TYPE" "SRGAP3 WILD-TYPE" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
"SRGAP3 WILD-TYPE" "SRGAP3 WILD-TYPE" "SRGAP3 WILD-TYPE" "SRGAP3 WILD-TYPE" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
"SRGAP3 WILD-TYPE" "SRGAP3 WILD-TYPE" "SRGAP3 WILD-TYPE"   "SRGAP3 MUTATED" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
"SRGAP3 WILD-TYPE" "SRGAP3 WILD-TYPE" "SRGAP3 WILD-TYPE"   "SRGAP3 MUTATED" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
"SRGAP3 WILD-TYPE" "SRGAP3 WILD-TYPE" "SRGAP3 WILD-TYPE" "SRGAP3 WILD-TYPE" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
"SRGAP3 WILD-TYPE" "SRGAP3 WILD-TYPE" "SRGAP3 WILD-TYPE" "SRGAP3 WILD-TYPE" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
  "SRGAP3 MUTATED"   "SRGAP3 MUTATED" "SRGAP3 WILD-TYPE" "SRGAP3 WILD-TYPE" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"SRGAP3 WILD-TYPE" "SRGAP3 WILD-TYPE" "SRGAP3 WILD-TYPE" "SRGAP3 WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"SRGAP3 WILD-TYPE" "SRGAP3 WILD-TYPE" "SRGAP3 WILD-TYPE" "SRGAP3 WILD-TYPE" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
"SRGAP3 WILD-TYPE" "SRGAP3 WILD-TYPE" "SRGAP3 WILD-TYPE" "SRGAP3 WILD-TYPE" 
      TCGA-US-A77J 
"SRGAP3 WILD-TYPE" 
[1] "hr=" "1.5"
D380V2, continuous
                  vv
clus               STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  SRGAP3 MUTATED          0        0         1         4         0        0
  SRGAP3 WILD-TYPE        1        4        10        47         2        3
D380V3, multiclass
                  vv
clus               T1+T2 T3+T4
  SRGAP3 MUTATED       0     5
  SRGAP3 WILD-TYPE     6    61
D380V4, multiclass
       clus
vv      SRGAP3 MUTATED SRGAP3 WILD-TYPE
  T1+T2              0                6
  T3+T4              5               61
D380V5, binary
                  cls
clus                0  1
  SRGAP3 MUTATED    1  4
  SRGAP3 WILD-TYPE 16 50
[1] "tbl2"
                  cls
clus               [,1] [,2]
  SRGAP3 MUTATED      1    4
  SRGAP3 WILD-TYPE   16   50
   clus
vv  SRGAP3 MUTATED SRGAP3 WILD-TYPE
  0              1               16
  1              4               50
                  vv
clus               M0 M1 MX
  SRGAP3 MUTATED    4  0  1
  SRGAP3 WILD-TYPE 35  3 29
D380V6, multiclass
    clus
vv   SRGAP3 MUTATED SRGAP3 WILD-TYPE
  M0              4               35
  M1              0                3
  MX              1               29
D380V7, binary
                  cls
clus                0  1
  SRGAP3 MUTATED    4  1
  SRGAP3 WILD-TYPE 32 35
[1] "tbl2"
                  cls
clus               [,1] [,2]
  SRGAP3 MUTATED      4    1
  SRGAP3 WILD-TYPE   32   35
        clus
vv       SRGAP3 MUTATED SRGAP3 WILD-TYPE
  FEMALE              4               32
  MALE                1               35
                  vv
clus               PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  SRGAP3 MUTATED                                     5
  SRGAP3 WILD-TYPE                                  60
                  vv
clus               PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  SRGAP3 MUTATED                                       0
  SRGAP3 WILD-TYPE                                     4
                  vv
clus               PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  SRGAP3 MUTATED                                                  0
  SRGAP3 WILD-TYPE                                                2
D380V8, multiclass
                                                  clus
vv                                                 SRGAP3 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                           5
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                         0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA              0
                                                  clus
vv                                                 SRGAP3 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                            60
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                           4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                2
D380V9, continuous
[1] "Remove cluster labels:" "SRGAP3 MUTATED"        
clus
  SRGAP3 MUTATED SRGAP3 WILD-TYPE 
               1               21 
      TCGA-F2-6880       TCGA-FB-A4P5       TCGA-FB-A4P6       TCGA-FB-A5VM 
"SRGAP3 WILD-TYPE" "SRGAP3 WILD-TYPE" "SRGAP3 WILD-TYPE" "SRGAP3 WILD-TYPE" 
      TCGA-FB-A78T       TCGA-FB-A7DR       TCGA-H6-8124       TCGA-H6-A45N 
"SRGAP3 WILD-TYPE" "SRGAP3 WILD-TYPE" "SRGAP3 WILD-TYPE" "SRGAP3 WILD-TYPE" 
      TCGA-H8-A6C1       TCGA-IB-7644       TCGA-IB-7649       TCGA-IB-7885 
"SRGAP3 WILD-TYPE" "SRGAP3 WILD-TYPE" "SRGAP3 WILD-TYPE" "SRGAP3 WILD-TYPE" 
      TCGA-IB-7886       TCGA-IB-7887       TCGA-IB-7891       TCGA-IB-8126 
"SRGAP3 WILD-TYPE" "SRGAP3 WILD-TYPE" "SRGAP3 WILD-TYPE" "SRGAP3 WILD-TYPE" 
      TCGA-IB-8127       TCGA-IB-A5SS       TCGA-IB-A6UG       TCGA-LB-A7SX 
"SRGAP3 WILD-TYPE" "SRGAP3 WILD-TYPE" "SRGAP3 WILD-TYPE" "SRGAP3 WILD-TYPE" 
      TCGA-OE-A75W 
"SRGAP3 WILD-TYPE" 
D380V10, continuous
[1] "Remove cluster labels:" "SRGAP3 MUTATED"        
clus
  SRGAP3 MUTATED SRGAP3 WILD-TYPE 
               1               18 
      TCGA-FB-A4P5       TCGA-FB-A4P6       TCGA-FB-A5VM       TCGA-FB-A78T 
"SRGAP3 WILD-TYPE" "SRGAP3 WILD-TYPE" "SRGAP3 WILD-TYPE" "SRGAP3 WILD-TYPE" 
      TCGA-FB-A7DR       TCGA-H6-8124       TCGA-H8-A6C1       TCGA-IB-7644 
"SRGAP3 WILD-TYPE" "SRGAP3 WILD-TYPE" "SRGAP3 WILD-TYPE" "SRGAP3 WILD-TYPE" 
      TCGA-IB-7649       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7891 
"SRGAP3 WILD-TYPE" "SRGAP3 WILD-TYPE" "SRGAP3 WILD-TYPE" "SRGAP3 WILD-TYPE" 
      TCGA-IB-8126       TCGA-IB-8127       TCGA-IB-A5SS       TCGA-IB-A6UG 
"SRGAP3 WILD-TYPE" "SRGAP3 WILD-TYPE" "SRGAP3 WILD-TYPE" "SRGAP3 WILD-TYPE" 
      TCGA-LB-A7SX       TCGA-OE-A75W 
"SRGAP3 WILD-TYPE" "SRGAP3 WILD-TYPE" 
                  vv
clus               R0 R1 RX
  SRGAP3 MUTATED    5  0  0
  SRGAP3 WILD-TYPE 37 24  2
D380V11, multiclass
    clus
vv   SRGAP3 MUTATED SRGAP3 WILD-TYPE
  R0              5               37
  R1              0               24
  RX              0                2
D380V12, continuous

Clustering(381) Variable = TEX15 MUTATION ANALYSIS
D381V1, survival
                 sevent
clus2              0  1
  TEX15 MUTATED    2  6
  TEX15 WILD-TYPE 38 23
  TEX15 MUTATED TEX15 WILD-TYPE 
              8              61 
  TEX15 MUTATED TEX15 WILD-TYPE 
              6              23 
$`TEX15 MUTATED`
TCGA-FB-A4P5 TCGA-H6-8124 TCGA-H6-A45N TCGA-HZ-A49G TCGA-IB-7646 TCGA-IB-7649 
        0.13        12.89         7.66         0.76         4.77        15.35 
TCGA-IB-7651 TCGA-IB-7897 
       19.82        15.98 

$`TEX15 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR TCGA-FZ-5920 
       11.93        12.66         2.47         0.03         5.46         2.01 
TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H8-A6C1 TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-7919 
       36.20        20.81        13.02         7.89         0.92         0.66 
TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8001 
        0.13         0.26        12.13        11.87         0.26         0.62 
TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8636 
        0.79         0.69         3.95         0.92         0.53         0.16 
TCGA-HZ-8638 TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7645 
        2.99         0.95         6.38         1.51        11.41        49.38 
TCGA-IB-7647 TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7888 
       21.90        15.65        27.98         4.04         3.62        43.79 
TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-8126 TCGA-IB-8127 
       15.81        19.66        16.04         3.85         0.56        17.16 
TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG 
       10.82         9.86         7.20        15.12         0.26         1.35 
TCGA-LB-A7SX TCGA-OE-A75W TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E 
        4.18         3.62         8.12        13.68        16.80        14.14 
TCGA-US-A77J 
       18.67 

  TEX15 MUTATED TEX15 WILD-TYPE 
           0.13            0.03 
  TEX15 MUTATED TEX15 WILD-TYPE 
          19.82           49.38 
  TEX15 MUTATED TEX15 WILD-TYPE 
         10.275           7.200 
[1] "0.1 - 19.8 (10.3)" "0.0 - 49.4 (7.2)" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"TEX15 WILD-TYPE" "TEX15 WILD-TYPE"   "TEX15 MUTATED" "TEX15 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE"   "TEX15 MUTATED" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
  "TEX15 MUTATED" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"TEX15 WILD-TYPE" "TEX15 WILD-TYPE"   "TEX15 MUTATED" "TEX15 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
  "TEX15 MUTATED" "TEX15 WILD-TYPE"   "TEX15 MUTATED"   "TEX15 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"TEX15 WILD-TYPE"   "TEX15 MUTATED" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" 
     TCGA-US-A77J 
"TEX15 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"TEX15 WILD-TYPE" "TEX15 WILD-TYPE"   "TEX15 MUTATED" "TEX15 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE"   "TEX15 MUTATED" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
  "TEX15 MUTATED" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"TEX15 WILD-TYPE" "TEX15 WILD-TYPE"   "TEX15 MUTATED" "TEX15 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
  "TEX15 MUTATED" "TEX15 WILD-TYPE"   "TEX15 MUTATED"   "TEX15 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"TEX15 WILD-TYPE"   "TEX15 MUTATED" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" 
     TCGA-US-A77J 
"TEX15 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"TEX15 WILD-TYPE" "TEX15 WILD-TYPE"   "TEX15 MUTATED" "TEX15 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE"   "TEX15 MUTATED" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
  "TEX15 MUTATED" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"TEX15 WILD-TYPE" "TEX15 WILD-TYPE"   "TEX15 MUTATED" "TEX15 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
  "TEX15 MUTATED" "TEX15 WILD-TYPE"   "TEX15 MUTATED"   "TEX15 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"TEX15 WILD-TYPE"   "TEX15 MUTATED" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" 
     TCGA-US-A77J 
"TEX15 WILD-TYPE" 
[1] "hr=" "2.1"
D381V2, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  TEX15 MUTATED          0        0         0         8         0        0
  TEX15 WILD-TYPE        1        4        11        43         2        3
D381V3, multiclass
                 vv
clus              T1+T2 T3+T4
  TEX15 MUTATED       1     7
  TEX15 WILD-TYPE     5    59
D381V4, multiclass
       clus
vv      TEX15 MUTATED TEX15 WILD-TYPE
  T1+T2             1               5
  T3+T4             7              59
D381V5, binary
                 cls
clus               0  1
  TEX15 MUTATED    0  8
  TEX15 WILD-TYPE 17 46
[1] "tbl2"
                 cls
clus              [,1] [,2]
  TEX15 MUTATED      0    8
  TEX15 WILD-TYPE   17   46
   clus
vv  TEX15 MUTATED TEX15 WILD-TYPE
  0             0              17
  1             8              46
                 vv
clus              M0 M1 MX
  TEX15 MUTATED    5  0  3
  TEX15 WILD-TYPE 34  3 27
D381V6, multiclass
    clus
vv   TEX15 MUTATED TEX15 WILD-TYPE
  M0             5              34
  M1             0               3
  MX             3              27
D381V7, binary
                 cls
clus               0  1
  TEX15 MUTATED    7  1
  TEX15 WILD-TYPE 29 35
[1] "tbl2"
                 cls
clus              [,1] [,2]
  TEX15 MUTATED      7    1
  TEX15 WILD-TYPE   29   35
        clus
vv       TEX15 MUTATED TEX15 WILD-TYPE
  FEMALE             7              29
  MALE               1              35
                 vv
clus              PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  TEX15 MUTATED                                     7
  TEX15 WILD-TYPE                                  58
                 vv
clus              PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  TEX15 MUTATED                                       1
  TEX15 WILD-TYPE                                     3
                 vv
clus              PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  TEX15 MUTATED                                                  0
  TEX15 WILD-TYPE                                                2
D381V8, multiclass
                                                  clus
vv                                                 TEX15 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                          7
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                        1
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA             0
                                                  clus
vv                                                 TEX15 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                           58
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                          3
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA               2
D381V9, continuous
D381V10, continuous
                 vv
clus              R0 R1 RX
  TEX15 MUTATED    4  3  0
  TEX15 WILD-TYPE 38 21  2
D381V11, multiclass
    clus
vv   TEX15 MUTATED TEX15 WILD-TYPE
  R0             4              38
  R1             3              21
  RX             0               2
D381V12, continuous

Clustering(382) Variable = OR7C2 MUTATION ANALYSIS
D382V1, survival
                 sevent
clus2              0  1
  OR7C2 MUTATED    2  1
  OR7C2 WILD-TYPE 38 28
  OR7C2 MUTATED OR7C2 WILD-TYPE 
              3              66 
  OR7C2 MUTATED OR7C2 WILD-TYPE 
              1              28 
$`OR7C2 MUTATED`
TCGA-HZ-7919 TCGA-IB-7649 TCGA-IB-8127 
        0.66        15.35        17.16 

$`OR7C2 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P5 TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR 
        0.13        11.93        12.66         2.47         0.03         5.46 
TCGA-FZ-5920 TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 
        2.01        36.20        20.81        12.89         7.66        13.02 
TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 
        7.89         0.92         0.13         0.26        12.13        11.87 
TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 
        0.26         0.62         0.79         0.69         3.95         0.92 
TCGA-HZ-8317 TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH 
        0.53         0.16         2.99         0.76         0.95         6.38 
TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7651 
        1.51        11.41        49.38         4.77        21.90        19.82 
TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 
       15.65        27.98         4.04         3.62        43.79        15.81 
TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-A5SO 
       19.66        16.04         3.85        15.98         0.56        10.82 
TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX 
        9.86         7.20        15.12         0.26         1.35         4.18 
TCGA-OE-A75W TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
        3.62         8.12        13.68        16.80        14.14        18.67 

  OR7C2 MUTATED OR7C2 WILD-TYPE 
           0.66            0.03 
  OR7C2 MUTATED OR7C2 WILD-TYPE 
          17.16           49.38 
  OR7C2 MUTATED OR7C2 WILD-TYPE 
          15.35            7.43 
[1] "0.7 - 17.2 (15.3)" "0.0 - 49.4 (7.4)" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
  "OR7C2 MUTATED" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE"   "OR7C2 MUTATED" "OR7C2 WILD-TYPE" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE"   "OR7C2 MUTATED" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" 
     TCGA-US-A77J 
"OR7C2 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
  "OR7C2 MUTATED" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE"   "OR7C2 MUTATED" "OR7C2 WILD-TYPE" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE"   "OR7C2 MUTATED" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" 
     TCGA-US-A77J 
"OR7C2 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
  "OR7C2 MUTATED" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE"   "OR7C2 MUTATED" "OR7C2 WILD-TYPE" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE"   "OR7C2 MUTATED" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" 
     TCGA-US-A77J 
"OR7C2 WILD-TYPE" 
[1] "hr=" "1.4"
D382V2, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  OR7C2 MUTATED          0        0         0         3         0        0
  OR7C2 WILD-TYPE        1        4        11        48         2        3
D382V3, multiclass
                 vv
clus              T1+T2 T3+T4
  OR7C2 MUTATED       0     3
  OR7C2 WILD-TYPE     6    63
D382V4, multiclass
       clus
vv      OR7C2 MUTATED OR7C2 WILD-TYPE
  T1+T2             0               6
  T3+T4             3              63
D382V5, binary
                 cls
clus               0  1
  OR7C2 MUTATED    0  3
  OR7C2 WILD-TYPE 17 51
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR7C2 MUTATED      0    3
  OR7C2 WILD-TYPE   17   51
   clus
vv  OR7C2 MUTATED OR7C2 WILD-TYPE
  0             0              17
  1             3              51
                 vv
clus              M0 M1 MX
  OR7C2 MUTATED    3  0  0
  OR7C2 WILD-TYPE 36  3 30
D382V6, multiclass
    clus
vv   OR7C2 MUTATED OR7C2 WILD-TYPE
  M0             3              36
  M1             0               3
  MX             0              30
D382V7, binary
                 cls
clus               0  1
  OR7C2 MUTATED    2  1
  OR7C2 WILD-TYPE 34 35
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR7C2 MUTATED      2    1
  OR7C2 WILD-TYPE   34   35
        clus
vv       OR7C2 MUTATED OR7C2 WILD-TYPE
  FEMALE             2              34
  MALE               1              35
                 vv
clus              PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  OR7C2 MUTATED                                     3
  OR7C2 WILD-TYPE                                  62
                 vv
clus              PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  OR7C2 MUTATED                                       0
  OR7C2 WILD-TYPE                                     4
                 vv
clus              PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  OR7C2 MUTATED                                                  0
  OR7C2 WILD-TYPE                                                2
D382V8, multiclass
                                                  clus
vv                                                 OR7C2 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                          3
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                        0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA             0
                                                  clus
vv                                                 OR7C2 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                           62
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                          4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA               2
D382V9, continuous
[1] "Remove cluster labels:" "OR7C2 MUTATED"         
clus
  OR7C2 MUTATED OR7C2 WILD-TYPE 
              2              20 
     TCGA-F2-6880      TCGA-FB-A4P5      TCGA-FB-A4P6      TCGA-FB-A5VM 
"OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" 
     TCGA-FB-A78T      TCGA-FB-A7DR      TCGA-H6-8124      TCGA-H6-A45N 
"OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" 
     TCGA-H8-A6C1      TCGA-IB-7644      TCGA-IB-7651      TCGA-IB-7885 
"OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" 
     TCGA-IB-7886      TCGA-IB-7887      TCGA-IB-7891      TCGA-IB-8126 
"OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" 
     TCGA-IB-A5SS      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" 
D382V10, continuous
[1] "Remove cluster labels:" "OR7C2 MUTATED"         
clus
  OR7C2 MUTATED OR7C2 WILD-TYPE 
              2              17 
     TCGA-FB-A4P5      TCGA-FB-A4P6      TCGA-FB-A5VM      TCGA-FB-A78T 
"OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" 
     TCGA-FB-A7DR      TCGA-H6-8124      TCGA-H8-A6C1      TCGA-IB-7644 
"OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" 
     TCGA-IB-7651      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7891 
"OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" 
     TCGA-IB-8126      TCGA-IB-A5SS      TCGA-IB-A6UG      TCGA-LB-A7SX 
"OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" "OR7C2 WILD-TYPE" 
     TCGA-OE-A75W 
"OR7C2 WILD-TYPE" 
                 vv
clus              R0 R1 RX
  OR7C2 MUTATED    0  3  0
  OR7C2 WILD-TYPE 42 21  2
D382V11, multiclass
    clus
vv   OR7C2 MUTATED OR7C2 WILD-TYPE
  R0             0              42
  R1             3              21
  RX             0               2
D382V12, continuous

Clustering(383) Variable = LMTK2 MUTATION ANALYSIS
D383V1, survival
                 sevent
clus2              0  1
  LMTK2 MUTATED    1  4
  LMTK2 WILD-TYPE 39 25
  LMTK2 MUTATED LMTK2 WILD-TYPE 
              5              64 
  LMTK2 MUTATED LMTK2 WILD-TYPE 
              4              25 
$`LMTK2 MUTATED`
TCGA-FB-A545 TCGA-H6-A45N TCGA-IB-7644 TCGA-IB-7651 TCGA-IB-7897 
       12.66         7.66        11.41        19.82        15.98 

$`LMTK2 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P5 TCGA-FB-A4P6 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR TCGA-FZ-5920 
        0.13        11.93         2.47         0.03         5.46         2.01 
TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 TCGA-H8-A6C1 TCGA-HZ-7289 TCGA-HZ-7918 
       36.20        20.81        12.89        13.02         7.89         0.92 
TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 
        0.66         0.13         0.26        12.13        11.87         0.26 
TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 
        0.62         0.79         0.69         3.95         0.92         0.53 
TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK 
        0.16         2.99         0.76         0.95         6.38         1.51 
TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7652 TCGA-IB-7885 
       49.38         4.77        21.90        15.35        15.65        27.98 
TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 
        4.04         3.62        43.79        15.81        19.66        16.04 
TCGA-IB-7893 TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ 
        3.85         0.56        17.16        10.82         9.86         7.20 
TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W TCGA-PZ-A5RE 
       15.12         0.26         1.35         4.18         3.62         8.12 
TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
       13.68        16.80        14.14        18.67 

  LMTK2 MUTATED LMTK2 WILD-TYPE 
           7.66            0.03 
  LMTK2 MUTATED LMTK2 WILD-TYPE 
          19.82           49.38 
  LMTK2 MUTATED LMTK2 WILD-TYPE 
          12.66            6.74 
[1] "7.7 - 19.8 (12.7)" "0.0 - 49.4 (6.7)" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
  "LMTK2 MUTATED" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
  "LMTK2 MUTATED" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE"   "LMTK2 MUTATED" "LMTK2 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE"   "LMTK2 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"LMTK2 WILD-TYPE"   "LMTK2 MUTATED" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" 
     TCGA-US-A77J 
"LMTK2 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
  "LMTK2 MUTATED" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
  "LMTK2 MUTATED" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE"   "LMTK2 MUTATED" "LMTK2 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE"   "LMTK2 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"LMTK2 WILD-TYPE"   "LMTK2 MUTATED" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" 
     TCGA-US-A77J 
"LMTK2 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
  "LMTK2 MUTATED" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
  "LMTK2 MUTATED" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE"   "LMTK2 MUTATED" "LMTK2 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE"   "LMTK2 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"LMTK2 WILD-TYPE"   "LMTK2 MUTATED" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" 
     TCGA-US-A77J 
"LMTK2 WILD-TYPE" 
[1] "hr=" "1.5"
D383V2, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  LMTK2 MUTATED          0        0         0         4         0        1
  LMTK2 WILD-TYPE        1        4        11        47         2        2
D383V3, multiclass
                 vv
clus              T1+T2 T3+T4
  LMTK2 MUTATED       0     5
  LMTK2 WILD-TYPE     6    61
D383V4, multiclass
       clus
vv      LMTK2 MUTATED LMTK2 WILD-TYPE
  T1+T2             0               6
  T3+T4             5              61
D383V5, binary
                 cls
clus               0  1
  LMTK2 MUTATED    0  5
  LMTK2 WILD-TYPE 17 49
[1] "tbl2"
                 cls
clus              [,1] [,2]
  LMTK2 MUTATED      0    5
  LMTK2 WILD-TYPE   17   49
   clus
vv  LMTK2 MUTATED LMTK2 WILD-TYPE
  0             0              17
  1             5              49
                 vv
clus              M0 M1 MX
  LMTK2 MUTATED    3  1  1
  LMTK2 WILD-TYPE 36  2 29
D383V6, multiclass
    clus
vv   LMTK2 MUTATED LMTK2 WILD-TYPE
  M0             3              36
  M1             1               2
  MX             1              29
D383V7, binary
                 cls
clus               0  1
  LMTK2 MUTATED    5  0
  LMTK2 WILD-TYPE 31 36
[1] "tbl2"
                 cls
clus              [,1] [,2]
  LMTK2 MUTATED      5    0
  LMTK2 WILD-TYPE   31   36
        clus
vv       LMTK2 MUTATED LMTK2 WILD-TYPE
  FEMALE             5              31
  MALE               0              36
                 vv
clus              PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  LMTK2 MUTATED                                     4
  LMTK2 WILD-TYPE                                  61
                 vv
clus              PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  LMTK2 MUTATED                                       1
  LMTK2 WILD-TYPE                                     3
                 vv
clus              PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  LMTK2 MUTATED                                                  0
  LMTK2 WILD-TYPE                                                2
D383V8, multiclass
                                                  clus
vv                                                 LMTK2 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                          4
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                        1
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA             0
                                                  clus
vv                                                 LMTK2 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                           61
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                          3
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA               2
D383V9, continuous
D383V10, continuous
[1] "Remove cluster labels:" "LMTK2 MUTATED"         
clus
  LMTK2 MUTATED LMTK2 WILD-TYPE 
              2              17 
     TCGA-FB-A4P5      TCGA-FB-A4P6      TCGA-FB-A5VM      TCGA-FB-A78T 
"LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" 
     TCGA-FB-A7DR      TCGA-H6-8124      TCGA-H8-A6C1      TCGA-IB-7649 
"LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" 
     TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7891      TCGA-IB-8126 
"LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" 
     TCGA-IB-8127      TCGA-IB-A5SS      TCGA-IB-A6UG      TCGA-LB-A7SX 
"LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" 
     TCGA-OE-A75W 
"LMTK2 WILD-TYPE" 
                 vv
clus              R0 R1 RX
  LMTK2 MUTATED    2  1  0
  LMTK2 WILD-TYPE 40 23  2
D383V11, multiclass
    clus
vv   LMTK2 MUTATED LMTK2 WILD-TYPE
  R0             2              40
  R1             1              23
  RX             0               2
D383V12, continuous

Clustering(384) Variable = MED23 MUTATION ANALYSIS
D384V1, survival
                 sevent
clus2              0  1
  MED23 MUTATED    2  3
  MED23 WILD-TYPE 38 26
  MED23 MUTATED MED23 WILD-TYPE 
              5              64 
  MED23 MUTATED MED23 WILD-TYPE 
              3              26 
$`MED23 MUTATED`
TCGA-F2-7273 TCGA-HZ-7923 TCGA-HZ-A49H TCGA-IB-7651 TCGA-IB-7886 
       11.84         0.26         0.95        19.82         4.04 

$`MED23 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H TCGA-FB-A4P5 
       10.98         9.70         7.10         5.03        19.27         0.13 
TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR TCGA-FZ-5920 
       11.93        12.66         2.47         0.03         5.46         2.01 
TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7289 
       36.20        20.81        12.89         7.66        13.02         7.89 
TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 
        0.92         0.66         0.13        12.13        11.87         0.26 
TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 
        0.62         0.79         0.69         3.95         0.92         0.53 
TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 
        0.16         2.99         0.76         6.38         1.51        11.41 
TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7652 TCGA-IB-7885 
       49.38         4.77        21.90        15.35        15.65        27.98 
TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-7893 
        3.62        43.79        15.81        19.66        16.04         3.85 
TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ 
       15.98         0.56        17.16        10.82         9.86         7.20 
TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W TCGA-PZ-A5RE 
       15.12         0.26         1.35         4.18         3.62         8.12 
TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
       13.68        16.80        14.14        18.67 

  MED23 MUTATED MED23 WILD-TYPE 
           0.26            0.03 
  MED23 MUTATED MED23 WILD-TYPE 
          19.82           49.38 
  MED23 MUTATED MED23 WILD-TYPE 
          4.040           7.775 
[1] "0.3 - 19.8 (4.0)" "0.0 - 49.4 (7.8)"
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"MED23 WILD-TYPE" "MED23 WILD-TYPE"   "MED23 MUTATED" "MED23 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"MED23 WILD-TYPE" "MED23 WILD-TYPE" "MED23 WILD-TYPE" "MED23 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"MED23 WILD-TYPE" "MED23 WILD-TYPE" "MED23 WILD-TYPE" "MED23 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"MED23 WILD-TYPE" "MED23 WILD-TYPE" "MED23 WILD-TYPE" "MED23 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"MED23 WILD-TYPE" "MED23 WILD-TYPE" "MED23 WILD-TYPE" "MED23 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"MED23 WILD-TYPE" "MED23 WILD-TYPE"   "MED23 MUTATED" "MED23 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"MED23 WILD-TYPE" "MED23 WILD-TYPE" "MED23 WILD-TYPE" "MED23 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"MED23 WILD-TYPE" "MED23 WILD-TYPE" "MED23 WILD-TYPE" "MED23 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"MED23 WILD-TYPE" "MED23 WILD-TYPE" "MED23 WILD-TYPE"   "MED23 MUTATED" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"MED23 WILD-TYPE" "MED23 WILD-TYPE" "MED23 WILD-TYPE" "MED23 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"MED23 WILD-TYPE" "MED23 WILD-TYPE" "MED23 WILD-TYPE"   "MED23 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"MED23 WILD-TYPE" "MED23 WILD-TYPE"   "MED23 MUTATED" "MED23 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"MED23 WILD-TYPE" "MED23 WILD-TYPE" "MED23 WILD-TYPE" "MED23 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"MED23 WILD-TYPE" "MED23 WILD-TYPE" "MED23 WILD-TYPE" "MED23 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"MED23 WILD-TYPE" "MED23 WILD-TYPE" "MED23 WILD-TYPE" "MED23 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"MED23 WILD-TYPE" "MED23 WILD-TYPE" "MED23 WILD-TYPE" "MED23 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"MED23 WILD-TYPE" "MED23 WILD-TYPE" "MED23 WILD-TYPE" "MED23 WILD-TYPE" 
     TCGA-US-A77J 
"MED23 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"MED23 WILD-TYPE" "MED23 WILD-TYPE"   "MED23 MUTATED" "MED23 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"MED23 WILD-TYPE" "MED23 WILD-TYPE" "MED23 WILD-TYPE" "MED23 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"MED23 WILD-TYPE" "MED23 WILD-TYPE" "MED23 WILD-TYPE" "MED23 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"MED23 WILD-TYPE" "MED23 WILD-TYPE" "MED23 WILD-TYPE" "MED23 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"MED23 WILD-TYPE" "MED23 WILD-TYPE" "MED23 WILD-TYPE" "MED23 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"MED23 WILD-TYPE" "MED23 WILD-TYPE"   "MED23 MUTATED" "MED23 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"MED23 WILD-TYPE" "MED23 WILD-TYPE" "MED23 WILD-TYPE" "MED23 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"MED23 WILD-TYPE" "MED23 WILD-TYPE" "MED23 WILD-TYPE" "MED23 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"MED23 WILD-TYPE" "MED23 WILD-TYPE" "MED23 WILD-TYPE"   "MED23 MUTATED" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"MED23 WILD-TYPE" "MED23 WILD-TYPE" "MED23 WILD-TYPE" "MED23 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"MED23 WILD-TYPE" "MED23 WILD-TYPE" "MED23 WILD-TYPE"   "MED23 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"MED23 WILD-TYPE" "MED23 WILD-TYPE"   "MED23 MUTATED" "MED23 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"MED23 WILD-TYPE" "MED23 WILD-TYPE" "MED23 WILD-TYPE" "MED23 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"MED23 WILD-TYPE" "MED23 WILD-TYPE" "MED23 WILD-TYPE" "MED23 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"MED23 WILD-TYPE" "MED23 WILD-TYPE" "MED23 WILD-TYPE" "MED23 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"MED23 WILD-TYPE" "MED23 WILD-TYPE" "MED23 WILD-TYPE" "MED23 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"MED23 WILD-TYPE" "MED23 WILD-TYPE" "MED23 WILD-TYPE" "MED23 WILD-TYPE" 
     TCGA-US-A77J 
"MED23 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"MED23 WILD-TYPE" "MED23 WILD-TYPE"   "MED23 MUTATED" "MED23 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"MED23 WILD-TYPE" "MED23 WILD-TYPE" "MED23 WILD-TYPE" "MED23 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"MED23 WILD-TYPE" "MED23 WILD-TYPE" "MED23 WILD-TYPE" "MED23 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"MED23 WILD-TYPE" "MED23 WILD-TYPE" "MED23 WILD-TYPE" "MED23 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"MED23 WILD-TYPE" "MED23 WILD-TYPE" "MED23 WILD-TYPE" "MED23 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"MED23 WILD-TYPE" "MED23 WILD-TYPE"   "MED23 MUTATED" "MED23 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"MED23 WILD-TYPE" "MED23 WILD-TYPE" "MED23 WILD-TYPE" "MED23 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"MED23 WILD-TYPE" "MED23 WILD-TYPE" "MED23 WILD-TYPE" "MED23 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"MED23 WILD-TYPE" "MED23 WILD-TYPE" "MED23 WILD-TYPE"   "MED23 MUTATED" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"MED23 WILD-TYPE" "MED23 WILD-TYPE" "MED23 WILD-TYPE" "MED23 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"MED23 WILD-TYPE" "MED23 WILD-TYPE" "MED23 WILD-TYPE"   "MED23 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"MED23 WILD-TYPE" "MED23 WILD-TYPE"   "MED23 MUTATED" "MED23 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"MED23 WILD-TYPE" "MED23 WILD-TYPE" "MED23 WILD-TYPE" "MED23 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"MED23 WILD-TYPE" "MED23 WILD-TYPE" "MED23 WILD-TYPE" "MED23 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"MED23 WILD-TYPE" "MED23 WILD-TYPE" "MED23 WILD-TYPE" "MED23 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"MED23 WILD-TYPE" "MED23 WILD-TYPE" "MED23 WILD-TYPE" "MED23 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"MED23 WILD-TYPE" "MED23 WILD-TYPE" "MED23 WILD-TYPE" "MED23 WILD-TYPE" 
     TCGA-US-A77J 
"MED23 WILD-TYPE" 
[1] "hr=" "1.9"
D384V2, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  MED23 MUTATED          0        0         1         4         0        0
  MED23 WILD-TYPE        1        4        10        47         2        3
D384V3, multiclass
                 vv
clus              T1+T2 T3+T4
  MED23 MUTATED       0     5
  MED23 WILD-TYPE     6    61
D384V4, multiclass
       clus
vv      MED23 MUTATED MED23 WILD-TYPE
  T1+T2             0               6
  T3+T4             5              61
D384V5, binary
                 cls
clus               0  1
  MED23 MUTATED    1  4
  MED23 WILD-TYPE 16 50
[1] "tbl2"
                 cls
clus              [,1] [,2]
  MED23 MUTATED      1    4
  MED23 WILD-TYPE   16   50
   clus
vv  MED23 MUTATED MED23 WILD-TYPE
  0             1              16
  1             4              50
                 vv
clus              M0 M1 MX
  MED23 MUTATED    3  0  2
  MED23 WILD-TYPE 36  3 28
D384V6, multiclass
    clus
vv   MED23 MUTATED MED23 WILD-TYPE
  M0             3              36
  M1             0               3
  MX             2              28
D384V7, binary
                 cls
clus               0  1
  MED23 MUTATED    2  3
  MED23 WILD-TYPE 34 33
[1] "tbl2"
                 cls
clus              [,1] [,2]
  MED23 MUTATED      2    3
  MED23 WILD-TYPE   34   33
        clus
vv       MED23 MUTATED MED23 WILD-TYPE
  FEMALE             2              34
  MALE               3              33
                 vv
clus              PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  MED23 MUTATED                                     5
  MED23 WILD-TYPE                                  60
                 vv
clus              PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  MED23 MUTATED                                       0
  MED23 WILD-TYPE                                     4
                 vv
clus              PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  MED23 MUTATED                                                  0
  MED23 WILD-TYPE                                                2
D384V8, multiclass
                                                  clus
vv                                                 MED23 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                          5
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                        0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA             0
                                                  clus
vv                                                 MED23 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                           60
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                          4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA               2
D384V9, continuous
[1] "Remove cluster labels:" "MED23 MUTATED"         
clus
  MED23 MUTATED MED23 WILD-TYPE 
              2              20 
     TCGA-F2-6880      TCGA-FB-A4P5      TCGA-FB-A4P6      TCGA-FB-A5VM 
"MED23 WILD-TYPE" "MED23 WILD-TYPE" "MED23 WILD-TYPE" "MED23 WILD-TYPE" 
     TCGA-FB-A78T      TCGA-FB-A7DR      TCGA-H6-8124      TCGA-H6-A45N 
"MED23 WILD-TYPE" "MED23 WILD-TYPE" "MED23 WILD-TYPE" "MED23 WILD-TYPE" 
     TCGA-H8-A6C1      TCGA-IB-7644      TCGA-IB-7649      TCGA-IB-7885 
"MED23 WILD-TYPE" "MED23 WILD-TYPE" "MED23 WILD-TYPE" "MED23 WILD-TYPE" 
     TCGA-IB-7887      TCGA-IB-7891      TCGA-IB-8126      TCGA-IB-8127 
"MED23 WILD-TYPE" "MED23 WILD-TYPE" "MED23 WILD-TYPE" "MED23 WILD-TYPE" 
     TCGA-IB-A5SS      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"MED23 WILD-TYPE" "MED23 WILD-TYPE" "MED23 WILD-TYPE" "MED23 WILD-TYPE" 
D384V10, continuous
[1] "Remove cluster labels:" "MED23 MUTATED"         
clus
  MED23 MUTATED MED23 WILD-TYPE 
              2              17 
     TCGA-FB-A4P5      TCGA-FB-A4P6      TCGA-FB-A5VM      TCGA-FB-A78T 
"MED23 WILD-TYPE" "MED23 WILD-TYPE" "MED23 WILD-TYPE" "MED23 WILD-TYPE" 
     TCGA-FB-A7DR      TCGA-H6-8124      TCGA-H8-A6C1      TCGA-IB-7644 
"MED23 WILD-TYPE" "MED23 WILD-TYPE" "MED23 WILD-TYPE" "MED23 WILD-TYPE" 
     TCGA-IB-7649      TCGA-IB-7885      TCGA-IB-7891      TCGA-IB-8126 
"MED23 WILD-TYPE" "MED23 WILD-TYPE" "MED23 WILD-TYPE" "MED23 WILD-TYPE" 
     TCGA-IB-8127      TCGA-IB-A5SS      TCGA-IB-A6UG      TCGA-LB-A7SX 
"MED23 WILD-TYPE" "MED23 WILD-TYPE" "MED23 WILD-TYPE" "MED23 WILD-TYPE" 
     TCGA-OE-A75W 
"MED23 WILD-TYPE" 
                 vv
clus              R0 R1 RX
  MED23 MUTATED    3  2  0
  MED23 WILD-TYPE 39 22  2
D384V11, multiclass
    clus
vv   MED23 MUTATED MED23 WILD-TYPE
  R0             3              39
  R1             2              22
  RX             0               2
D384V12, continuous

Clustering(385) Variable = ITPR2 MUTATION ANALYSIS
D385V1, survival
                 sevent
clus2              0  1
  ITPR2 MUTATED    1  5
  ITPR2 WILD-TYPE 39 24
  ITPR2 MUTATED ITPR2 WILD-TYPE 
              6              63 
  ITPR2 MUTATED ITPR2 WILD-TYPE 
              5              24 
$`ITPR2 MUTATED`
TCGA-H6-8124 TCGA-IB-7646 TCGA-IB-7651 TCGA-IB-7886 TCGA-IB-7888 TCGA-IB-7897 
       12.89         4.77        19.82         4.04        43.79        15.98 

$`ITPR2 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P5 TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR 
        0.13        11.93        12.66         2.47         0.03         5.46 
TCGA-FZ-5920 TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7289 
        2.01        36.20        20.81         7.66        13.02         7.89 
TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 
        0.92         0.66         0.13         0.26        12.13        11.87 
TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 
        0.26         0.62         0.79         0.69         3.95         0.92 
TCGA-HZ-8317 TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH 
        0.53         0.16         2.99         0.76         0.95         6.38 
TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7652 
        1.51        11.41        49.38        21.90        15.35        15.65 
TCGA-IB-7885 TCGA-IB-7887 TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-7893 
       27.98         3.62        15.81        19.66        16.04         3.85 
TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS 
        0.56        17.16        10.82         9.86         7.20        15.12 
TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W TCGA-PZ-A5RE TCGA-Q3-A5QY 
        0.26         1.35         4.18         3.62         8.12        13.68 
TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
       16.80        14.14        18.67 

  ITPR2 MUTATED ITPR2 WILD-TYPE 
           4.04            0.03 
  ITPR2 MUTATED ITPR2 WILD-TYPE 
          43.79           49.38 
  ITPR2 MUTATED ITPR2 WILD-TYPE 
         14.435           7.200 
[1] "4.0 - 43.8 (14.4)" "0.0 - 49.4 (7.2)" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"ITPR2 WILD-TYPE" "ITPR2 WILD-TYPE" "ITPR2 WILD-TYPE" "ITPR2 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"ITPR2 WILD-TYPE" "ITPR2 WILD-TYPE" "ITPR2 WILD-TYPE" "ITPR2 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"ITPR2 WILD-TYPE" "ITPR2 WILD-TYPE" "ITPR2 WILD-TYPE" "ITPR2 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"ITPR2 WILD-TYPE" "ITPR2 WILD-TYPE" "ITPR2 WILD-TYPE"   "ITPR2 MUTATED" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"ITPR2 WILD-TYPE" "ITPR2 WILD-TYPE" "ITPR2 WILD-TYPE" "ITPR2 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"ITPR2 WILD-TYPE" "ITPR2 WILD-TYPE" "ITPR2 WILD-TYPE" "ITPR2 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"ITPR2 WILD-TYPE" "ITPR2 WILD-TYPE" "ITPR2 WILD-TYPE" "ITPR2 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"ITPR2 WILD-TYPE" "ITPR2 WILD-TYPE" "ITPR2 WILD-TYPE" "ITPR2 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"ITPR2 WILD-TYPE" "ITPR2 WILD-TYPE" "ITPR2 WILD-TYPE" "ITPR2 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"ITPR2 WILD-TYPE" "ITPR2 WILD-TYPE" "ITPR2 WILD-TYPE" "ITPR2 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
  "ITPR2 MUTATED" "ITPR2 WILD-TYPE" "ITPR2 WILD-TYPE"   "ITPR2 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"ITPR2 WILD-TYPE" "ITPR2 WILD-TYPE"   "ITPR2 MUTATED" "ITPR2 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
  "ITPR2 MUTATED" "ITPR2 WILD-TYPE" "ITPR2 WILD-TYPE" "ITPR2 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"ITPR2 WILD-TYPE"   "ITPR2 MUTATED" "ITPR2 WILD-TYPE" "ITPR2 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"ITPR2 WILD-TYPE" "ITPR2 WILD-TYPE" "ITPR2 WILD-TYPE" "ITPR2 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"ITPR2 WILD-TYPE" "ITPR2 WILD-TYPE" "ITPR2 WILD-TYPE" "ITPR2 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"ITPR2 WILD-TYPE" "ITPR2 WILD-TYPE" "ITPR2 WILD-TYPE" "ITPR2 WILD-TYPE" 
     TCGA-US-A77J 
"ITPR2 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"ITPR2 WILD-TYPE" "ITPR2 WILD-TYPE" "ITPR2 WILD-TYPE" "ITPR2 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"ITPR2 WILD-TYPE" "ITPR2 WILD-TYPE" "ITPR2 WILD-TYPE" "ITPR2 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"ITPR2 WILD-TYPE" "ITPR2 WILD-TYPE" "ITPR2 WILD-TYPE" "ITPR2 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"ITPR2 WILD-TYPE" "ITPR2 WILD-TYPE" "ITPR2 WILD-TYPE"   "ITPR2 MUTATED" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"ITPR2 WILD-TYPE" "ITPR2 WILD-TYPE" "ITPR2 WILD-TYPE" "ITPR2 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"ITPR2 WILD-TYPE" "ITPR2 WILD-TYPE" "ITPR2 WILD-TYPE" "ITPR2 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"ITPR2 WILD-TYPE" "ITPR2 WILD-TYPE" "ITPR2 WILD-TYPE" "ITPR2 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"ITPR2 WILD-TYPE" "ITPR2 WILD-TYPE" "ITPR2 WILD-TYPE" "ITPR2 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"ITPR2 WILD-TYPE" "ITPR2 WILD-TYPE" "ITPR2 WILD-TYPE" "ITPR2 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"ITPR2 WILD-TYPE" "ITPR2 WILD-TYPE" "ITPR2 WILD-TYPE" "ITPR2 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
  "ITPR2 MUTATED" "ITPR2 WILD-TYPE" "ITPR2 WILD-TYPE"   "ITPR2 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"ITPR2 WILD-TYPE" "ITPR2 WILD-TYPE"   "ITPR2 MUTATED" "ITPR2 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
  "ITPR2 MUTATED" "ITPR2 WILD-TYPE" "ITPR2 WILD-TYPE" "ITPR2 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"ITPR2 WILD-TYPE"   "ITPR2 MUTATED" "ITPR2 WILD-TYPE" "ITPR2 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"ITPR2 WILD-TYPE" "ITPR2 WILD-TYPE" "ITPR2 WILD-TYPE" "ITPR2 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"ITPR2 WILD-TYPE" "ITPR2 WILD-TYPE" "ITPR2 WILD-TYPE" "ITPR2 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"ITPR2 WILD-TYPE" "ITPR2 WILD-TYPE" "ITPR2 WILD-TYPE" "ITPR2 WILD-TYPE" 
     TCGA-US-A77J 
"ITPR2 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"ITPR2 WILD-TYPE" "ITPR2 WILD-TYPE" "ITPR2 WILD-TYPE" "ITPR2 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"ITPR2 WILD-TYPE" "ITPR2 WILD-TYPE" "ITPR2 WILD-TYPE" "ITPR2 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"ITPR2 WILD-TYPE" "ITPR2 WILD-TYPE" "ITPR2 WILD-TYPE" "ITPR2 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"ITPR2 WILD-TYPE" "ITPR2 WILD-TYPE" "ITPR2 WILD-TYPE"   "ITPR2 MUTATED" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"ITPR2 WILD-TYPE" "ITPR2 WILD-TYPE" "ITPR2 WILD-TYPE" "ITPR2 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"ITPR2 WILD-TYPE" "ITPR2 WILD-TYPE" "ITPR2 WILD-TYPE" "ITPR2 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"ITPR2 WILD-TYPE" "ITPR2 WILD-TYPE" "ITPR2 WILD-TYPE" "ITPR2 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"ITPR2 WILD-TYPE" "ITPR2 WILD-TYPE" "ITPR2 WILD-TYPE" "ITPR2 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"ITPR2 WILD-TYPE" "ITPR2 WILD-TYPE" "ITPR2 WILD-TYPE" "ITPR2 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"ITPR2 WILD-TYPE" "ITPR2 WILD-TYPE" "ITPR2 WILD-TYPE" "ITPR2 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
  "ITPR2 MUTATED" "ITPR2 WILD-TYPE" "ITPR2 WILD-TYPE"   "ITPR2 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"ITPR2 WILD-TYPE" "ITPR2 WILD-TYPE"   "ITPR2 MUTATED" "ITPR2 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
  "ITPR2 MUTATED" "ITPR2 WILD-TYPE" "ITPR2 WILD-TYPE" "ITPR2 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"ITPR2 WILD-TYPE"   "ITPR2 MUTATED" "ITPR2 WILD-TYPE" "ITPR2 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"ITPR2 WILD-TYPE" "ITPR2 WILD-TYPE" "ITPR2 WILD-TYPE" "ITPR2 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"ITPR2 WILD-TYPE" "ITPR2 WILD-TYPE" "ITPR2 WILD-TYPE" "ITPR2 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"ITPR2 WILD-TYPE" "ITPR2 WILD-TYPE" "ITPR2 WILD-TYPE" "ITPR2 WILD-TYPE" 
     TCGA-US-A77J 
"ITPR2 WILD-TYPE" 
[1] "hr=" "1"  
D385V2, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  ITPR2 MUTATED          0        0         1         6         0        0
  ITPR2 WILD-TYPE        1        4        10        45         2        3
D385V3, multiclass
                 vv
clus              T1+T2 T3+T4
  ITPR2 MUTATED       0     7
  ITPR2 WILD-TYPE     6    59
D385V4, multiclass
       clus
vv      ITPR2 MUTATED ITPR2 WILD-TYPE
  T1+T2             0               6
  T3+T4             7              59
D385V5, binary
                 cls
clus               0  1
  ITPR2 MUTATED    1  6
  ITPR2 WILD-TYPE 16 48
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ITPR2 MUTATED      1    6
  ITPR2 WILD-TYPE   16   48
   clus
vv  ITPR2 MUTATED ITPR2 WILD-TYPE
  0             1              16
  1             6              48
                 vv
clus              M0 M1 MX
  ITPR2 MUTATED    6  0  1
  ITPR2 WILD-TYPE 33  3 29
D385V6, multiclass
    clus
vv   ITPR2 MUTATED ITPR2 WILD-TYPE
  M0             6              33
  M1             0               3
  MX             1              29
D385V7, binary
                 cls
clus               0  1
  ITPR2 MUTATED    5  2
  ITPR2 WILD-TYPE 31 34
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ITPR2 MUTATED      5    2
  ITPR2 WILD-TYPE   31   34
        clus
vv       ITPR2 MUTATED ITPR2 WILD-TYPE
  FEMALE             5              31
  MALE               2              34
                 vv
clus              PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  ITPR2 MUTATED                                     7
  ITPR2 WILD-TYPE                                  58
                 vv
clus              PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  ITPR2 MUTATED                                       0
  ITPR2 WILD-TYPE                                     4
                 vv
clus              PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  ITPR2 MUTATED                                                  0
  ITPR2 WILD-TYPE                                                2
D385V8, multiclass
                                                  clus
vv                                                 ITPR2 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                          7
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                        0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA             0
                                                  clus
vv                                                 ITPR2 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                           58
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                          4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA               2
D385V9, continuous
D385V10, continuous
                 vv
clus              R0 R1 RX
  ITPR2 MUTATED    5  2  0
  ITPR2 WILD-TYPE 37 22  2
D385V11, multiclass
    clus
vv   ITPR2 MUTATED ITPR2 WILD-TYPE
  R0             5              37
  R1             2              22
  RX             0               2
D385V12, continuous

Clustering(386) Variable = CCNK MUTATION ANALYSIS
D386V1, survival
                sevent
clus2             0  1
  CCNK MUTATED    1  3
  CCNK WILD-TYPE 39 26
  CCNK MUTATED CCNK WILD-TYPE 
             4             65 
  CCNK MUTATED CCNK WILD-TYPE 
             3             26 
$`CCNK MUTATED`
TCGA-HZ-8003 TCGA-IB-7651 TCGA-IB-7893 TCGA-IB-7897 
        0.69        19.82         3.85        15.98 

$`CCNK WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P5 TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR 
        0.13        11.93        12.66         2.47         0.03         5.46 
TCGA-FZ-5920 TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 
        2.01        36.20        20.81        12.89         7.66        13.02 
TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 
        7.89         0.92         0.66         0.13         0.26        12.13 
TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8005 TCGA-HZ-8315 
       11.87         0.26         0.62         0.79         3.95         0.92 
TCGA-HZ-8317 TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH 
        0.53         0.16         2.99         0.76         0.95         6.38 
TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 
        1.51        11.41        49.38         4.77        21.90        15.35 
TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 
       15.65        27.98         4.04         3.62        43.79        15.81 
TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP 
       19.66        16.04         0.56        17.16        10.82         9.86 
TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W 
        7.20        15.12         0.26         1.35         4.18         3.62 
TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
        8.12        13.68        16.80        14.14        18.67 

  CCNK MUTATED CCNK WILD-TYPE 
          0.69           0.03 
  CCNK MUTATED CCNK WILD-TYPE 
         19.82          49.38 
  CCNK MUTATED CCNK WILD-TYPE 
         9.915          7.660 
[1] "0.7 - 19.8 (9.9)" "0.0 - 49.4 (7.7)"
    TCGA-F2-6879     TCGA-F2-6880     TCGA-F2-7273     TCGA-F2-7276 
"CCNK WILD-TYPE" "CCNK WILD-TYPE" "CCNK WILD-TYPE" "CCNK WILD-TYPE" 
    TCGA-F2-A44G     TCGA-F2-A44H     TCGA-FB-A4P5     TCGA-FB-A4P6 
"CCNK WILD-TYPE" "CCNK WILD-TYPE" "CCNK WILD-TYPE" "CCNK WILD-TYPE" 
    TCGA-FB-A545     TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-FB-A7DR 
"CCNK WILD-TYPE" "CCNK WILD-TYPE" "CCNK WILD-TYPE" "CCNK WILD-TYPE" 
    TCGA-FZ-5920     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-H6-8124 
"CCNK WILD-TYPE" "CCNK WILD-TYPE" "CCNK WILD-TYPE" "CCNK WILD-TYPE" 
    TCGA-H6-A45N     TCGA-H8-A6C1     TCGA-HZ-7289     TCGA-HZ-7918 
"CCNK WILD-TYPE" "CCNK WILD-TYPE" "CCNK WILD-TYPE" "CCNK WILD-TYPE" 
    TCGA-HZ-7919     TCGA-HZ-7922     TCGA-HZ-7923     TCGA-HZ-7924 
"CCNK WILD-TYPE" "CCNK WILD-TYPE" "CCNK WILD-TYPE" "CCNK WILD-TYPE" 
    TCGA-HZ-7925     TCGA-HZ-7926     TCGA-HZ-8001     TCGA-HZ-8002 
"CCNK WILD-TYPE" "CCNK WILD-TYPE" "CCNK WILD-TYPE" "CCNK WILD-TYPE" 
    TCGA-HZ-8003     TCGA-HZ-8005     TCGA-HZ-8315     TCGA-HZ-8317 
  "CCNK MUTATED" "CCNK WILD-TYPE" "CCNK WILD-TYPE" "CCNK WILD-TYPE" 
    TCGA-HZ-8636     TCGA-HZ-8638     TCGA-HZ-A49G     TCGA-HZ-A49H 
"CCNK WILD-TYPE" "CCNK WILD-TYPE" "CCNK WILD-TYPE" "CCNK WILD-TYPE" 
    TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-IB-7644     TCGA-IB-7645 
"CCNK WILD-TYPE" "CCNK WILD-TYPE" "CCNK WILD-TYPE" "CCNK WILD-TYPE" 
    TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7651 
"CCNK WILD-TYPE" "CCNK WILD-TYPE" "CCNK WILD-TYPE"   "CCNK MUTATED" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887 
"CCNK WILD-TYPE" "CCNK WILD-TYPE" "CCNK WILD-TYPE" "CCNK WILD-TYPE" 
    TCGA-IB-7888     TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891 
"CCNK WILD-TYPE" "CCNK WILD-TYPE" "CCNK WILD-TYPE" "CCNK WILD-TYPE" 
    TCGA-IB-7893     TCGA-IB-7897     TCGA-IB-8126     TCGA-IB-8127 
  "CCNK MUTATED"   "CCNK MUTATED" "CCNK WILD-TYPE" "CCNK WILD-TYPE" 
    TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS 
"CCNK WILD-TYPE" "CCNK WILD-TYPE" "CCNK WILD-TYPE" "CCNK WILD-TYPE" 
    TCGA-IB-A5ST     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
"CCNK WILD-TYPE" "CCNK WILD-TYPE" "CCNK WILD-TYPE" "CCNK WILD-TYPE" 
    TCGA-PZ-A5RE     TCGA-Q3-A5QY     TCGA-US-A779     TCGA-US-A77E 
"CCNK WILD-TYPE" "CCNK WILD-TYPE" "CCNK WILD-TYPE" "CCNK WILD-TYPE" 
    TCGA-US-A77J 
"CCNK WILD-TYPE" 
    TCGA-F2-6879     TCGA-F2-6880     TCGA-F2-7273     TCGA-F2-7276 
"CCNK WILD-TYPE" "CCNK WILD-TYPE" "CCNK WILD-TYPE" "CCNK WILD-TYPE" 
    TCGA-F2-A44G     TCGA-F2-A44H     TCGA-FB-A4P5     TCGA-FB-A4P6 
"CCNK WILD-TYPE" "CCNK WILD-TYPE" "CCNK WILD-TYPE" "CCNK WILD-TYPE" 
    TCGA-FB-A545     TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-FB-A7DR 
"CCNK WILD-TYPE" "CCNK WILD-TYPE" "CCNK WILD-TYPE" "CCNK WILD-TYPE" 
    TCGA-FZ-5920     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-H6-8124 
"CCNK WILD-TYPE" "CCNK WILD-TYPE" "CCNK WILD-TYPE" "CCNK WILD-TYPE" 
    TCGA-H6-A45N     TCGA-H8-A6C1     TCGA-HZ-7289     TCGA-HZ-7918 
"CCNK WILD-TYPE" "CCNK WILD-TYPE" "CCNK WILD-TYPE" "CCNK WILD-TYPE" 
    TCGA-HZ-7919     TCGA-HZ-7922     TCGA-HZ-7923     TCGA-HZ-7924 
"CCNK WILD-TYPE" "CCNK WILD-TYPE" "CCNK WILD-TYPE" "CCNK WILD-TYPE" 
    TCGA-HZ-7925     TCGA-HZ-7926     TCGA-HZ-8001     TCGA-HZ-8002 
"CCNK WILD-TYPE" "CCNK WILD-TYPE" "CCNK WILD-TYPE" "CCNK WILD-TYPE" 
    TCGA-HZ-8003     TCGA-HZ-8005     TCGA-HZ-8315     TCGA-HZ-8317 
  "CCNK MUTATED" "CCNK WILD-TYPE" "CCNK WILD-TYPE" "CCNK WILD-TYPE" 
    TCGA-HZ-8636     TCGA-HZ-8638     TCGA-HZ-A49G     TCGA-HZ-A49H 
"CCNK WILD-TYPE" "CCNK WILD-TYPE" "CCNK WILD-TYPE" "CCNK WILD-TYPE" 
    TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-IB-7644     TCGA-IB-7645 
"CCNK WILD-TYPE" "CCNK WILD-TYPE" "CCNK WILD-TYPE" "CCNK WILD-TYPE" 
    TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7651 
"CCNK WILD-TYPE" "CCNK WILD-TYPE" "CCNK WILD-TYPE"   "CCNK MUTATED" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887 
"CCNK WILD-TYPE" "CCNK WILD-TYPE" "CCNK WILD-TYPE" "CCNK WILD-TYPE" 
    TCGA-IB-7888     TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891 
"CCNK WILD-TYPE" "CCNK WILD-TYPE" "CCNK WILD-TYPE" "CCNK WILD-TYPE" 
    TCGA-IB-7893     TCGA-IB-7897     TCGA-IB-8126     TCGA-IB-8127 
  "CCNK MUTATED"   "CCNK MUTATED" "CCNK WILD-TYPE" "CCNK WILD-TYPE" 
    TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS 
"CCNK WILD-TYPE" "CCNK WILD-TYPE" "CCNK WILD-TYPE" "CCNK WILD-TYPE" 
    TCGA-IB-A5ST     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
"CCNK WILD-TYPE" "CCNK WILD-TYPE" "CCNK WILD-TYPE" "CCNK WILD-TYPE" 
    TCGA-PZ-A5RE     TCGA-Q3-A5QY     TCGA-US-A779     TCGA-US-A77E 
"CCNK WILD-TYPE" "CCNK WILD-TYPE" "CCNK WILD-TYPE" "CCNK WILD-TYPE" 
    TCGA-US-A77J 
"CCNK WILD-TYPE" 
    TCGA-F2-6879     TCGA-F2-6880     TCGA-F2-7273     TCGA-F2-7276 
"CCNK WILD-TYPE" "CCNK WILD-TYPE" "CCNK WILD-TYPE" "CCNK WILD-TYPE" 
    TCGA-F2-A44G     TCGA-F2-A44H     TCGA-FB-A4P5     TCGA-FB-A4P6 
"CCNK WILD-TYPE" "CCNK WILD-TYPE" "CCNK WILD-TYPE" "CCNK WILD-TYPE" 
    TCGA-FB-A545     TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-FB-A7DR 
"CCNK WILD-TYPE" "CCNK WILD-TYPE" "CCNK WILD-TYPE" "CCNK WILD-TYPE" 
    TCGA-FZ-5920     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-H6-8124 
"CCNK WILD-TYPE" "CCNK WILD-TYPE" "CCNK WILD-TYPE" "CCNK WILD-TYPE" 
    TCGA-H6-A45N     TCGA-H8-A6C1     TCGA-HZ-7289     TCGA-HZ-7918 
"CCNK WILD-TYPE" "CCNK WILD-TYPE" "CCNK WILD-TYPE" "CCNK WILD-TYPE" 
    TCGA-HZ-7919     TCGA-HZ-7922     TCGA-HZ-7923     TCGA-HZ-7924 
"CCNK WILD-TYPE" "CCNK WILD-TYPE" "CCNK WILD-TYPE" "CCNK WILD-TYPE" 
    TCGA-HZ-7925     TCGA-HZ-7926     TCGA-HZ-8001     TCGA-HZ-8002 
"CCNK WILD-TYPE" "CCNK WILD-TYPE" "CCNK WILD-TYPE" "CCNK WILD-TYPE" 
    TCGA-HZ-8003     TCGA-HZ-8005     TCGA-HZ-8315     TCGA-HZ-8317 
  "CCNK MUTATED" "CCNK WILD-TYPE" "CCNK WILD-TYPE" "CCNK WILD-TYPE" 
    TCGA-HZ-8636     TCGA-HZ-8638     TCGA-HZ-A49G     TCGA-HZ-A49H 
"CCNK WILD-TYPE" "CCNK WILD-TYPE" "CCNK WILD-TYPE" "CCNK WILD-TYPE" 
    TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-IB-7644     TCGA-IB-7645 
"CCNK WILD-TYPE" "CCNK WILD-TYPE" "CCNK WILD-TYPE" "CCNK WILD-TYPE" 
    TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7651 
"CCNK WILD-TYPE" "CCNK WILD-TYPE" "CCNK WILD-TYPE"   "CCNK MUTATED" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887 
"CCNK WILD-TYPE" "CCNK WILD-TYPE" "CCNK WILD-TYPE" "CCNK WILD-TYPE" 
    TCGA-IB-7888     TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891 
"CCNK WILD-TYPE" "CCNK WILD-TYPE" "CCNK WILD-TYPE" "CCNK WILD-TYPE" 
    TCGA-IB-7893     TCGA-IB-7897     TCGA-IB-8126     TCGA-IB-8127 
  "CCNK MUTATED"   "CCNK MUTATED" "CCNK WILD-TYPE" "CCNK WILD-TYPE" 
    TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS 
"CCNK WILD-TYPE" "CCNK WILD-TYPE" "CCNK WILD-TYPE" "CCNK WILD-TYPE" 
    TCGA-IB-A5ST     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
"CCNK WILD-TYPE" "CCNK WILD-TYPE" "CCNK WILD-TYPE" "CCNK WILD-TYPE" 
    TCGA-PZ-A5RE     TCGA-Q3-A5QY     TCGA-US-A779     TCGA-US-A77E 
"CCNK WILD-TYPE" "CCNK WILD-TYPE" "CCNK WILD-TYPE" "CCNK WILD-TYPE" 
    TCGA-US-A77J 
"CCNK WILD-TYPE" 
[1] "hr=" "1.6"
D386V2, continuous
                vv
clus             STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  CCNK MUTATED          0        0         1         3         0        0
  CCNK WILD-TYPE        1        4        10        48         2        3
D386V3, multiclass
                vv
clus             T1+T2 T3+T4
  CCNK MUTATED       0     4
  CCNK WILD-TYPE     6    62
D386V4, multiclass
       clus
vv      CCNK MUTATED CCNK WILD-TYPE
  T1+T2            0              6
  T3+T4            4             62
D386V5, binary
                cls
clus              0  1
  CCNK MUTATED    1  3
  CCNK WILD-TYPE 16 51
[1] "tbl2"
                cls
clus             [,1] [,2]
  CCNK MUTATED      1    3
  CCNK WILD-TYPE   16   51
   clus
vv  CCNK MUTATED CCNK WILD-TYPE
  0            1             16
  1            3             51
                vv
clus             M0 M1 MX
  CCNK MUTATED    3  0  1
  CCNK WILD-TYPE 36  3 29
D386V6, multiclass
    clus
vv   CCNK MUTATED CCNK WILD-TYPE
  M0            3             36
  M1            0              3
  MX            1             29
D386V7, binary
                cls
clus              0  1
  CCNK MUTATED    3  1
  CCNK WILD-TYPE 33 35
[1] "tbl2"
                cls
clus             [,1] [,2]
  CCNK MUTATED      3    1
  CCNK WILD-TYPE   33   35
        clus
vv       CCNK MUTATED CCNK WILD-TYPE
  FEMALE            3             33
  MALE              1             35
                vv
clus             PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  CCNK MUTATED                                     4
  CCNK WILD-TYPE                                  61
                vv
clus             PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  CCNK MUTATED                                       0
  CCNK WILD-TYPE                                     4
                vv
clus             PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  CCNK MUTATED                                                  0
  CCNK WILD-TYPE                                                2
D386V8, multiclass
                                                  clus
vv                                                 CCNK MUTATED CCNK WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                         4             61
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                       0              4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA            0              2
D386V9, continuous
[1] "Remove cluster labels:" "CCNK MUTATED"          
clus
  CCNK MUTATED CCNK WILD-TYPE 
             1             21 
    TCGA-F2-6880     TCGA-FB-A4P5     TCGA-FB-A4P6     TCGA-FB-A5VM 
"CCNK WILD-TYPE" "CCNK WILD-TYPE" "CCNK WILD-TYPE" "CCNK WILD-TYPE" 
    TCGA-FB-A78T     TCGA-FB-A7DR     TCGA-H6-8124     TCGA-H6-A45N 
"CCNK WILD-TYPE" "CCNK WILD-TYPE" "CCNK WILD-TYPE" "CCNK WILD-TYPE" 
    TCGA-H8-A6C1     TCGA-IB-7644     TCGA-IB-7649     TCGA-IB-7885 
"CCNK WILD-TYPE" "CCNK WILD-TYPE" "CCNK WILD-TYPE" "CCNK WILD-TYPE" 
    TCGA-IB-7886     TCGA-IB-7887     TCGA-IB-7891     TCGA-IB-8126 
"CCNK WILD-TYPE" "CCNK WILD-TYPE" "CCNK WILD-TYPE" "CCNK WILD-TYPE" 
    TCGA-IB-8127     TCGA-IB-A5SS     TCGA-IB-A6UG     TCGA-LB-A7SX 
"CCNK WILD-TYPE" "CCNK WILD-TYPE" "CCNK WILD-TYPE" "CCNK WILD-TYPE" 
    TCGA-OE-A75W 
"CCNK WILD-TYPE" 
D386V10, continuous
[1] "Remove cluster labels:" "CCNK MUTATED"          
clus
  CCNK MUTATED CCNK WILD-TYPE 
             1             18 
    TCGA-FB-A4P5     TCGA-FB-A4P6     TCGA-FB-A5VM     TCGA-FB-A78T 
"CCNK WILD-TYPE" "CCNK WILD-TYPE" "CCNK WILD-TYPE" "CCNK WILD-TYPE" 
    TCGA-FB-A7DR     TCGA-H6-8124     TCGA-H8-A6C1     TCGA-IB-7644 
"CCNK WILD-TYPE" "CCNK WILD-TYPE" "CCNK WILD-TYPE" "CCNK WILD-TYPE" 
    TCGA-IB-7649     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7891 
"CCNK WILD-TYPE" "CCNK WILD-TYPE" "CCNK WILD-TYPE" "CCNK WILD-TYPE" 
    TCGA-IB-8126     TCGA-IB-8127     TCGA-IB-A5SS     TCGA-IB-A6UG 
"CCNK WILD-TYPE" "CCNK WILD-TYPE" "CCNK WILD-TYPE" "CCNK WILD-TYPE" 
    TCGA-LB-A7SX     TCGA-OE-A75W 
"CCNK WILD-TYPE" "CCNK WILD-TYPE" 
                vv
clus             R0 R1 RX
  CCNK MUTATED    4  0  0
  CCNK WILD-TYPE 38 24  2
D386V11, multiclass
    clus
vv   CCNK MUTATED CCNK WILD-TYPE
  R0            4             38
  R1            0             24
  RX            0              2
D386V12, continuous

Clustering(387) Variable = SLC39A4 MUTATION ANALYSIS
D387V1, survival
                   sevent
clus2                0  1
  SLC39A4 MUTATED    2  2
  SLC39A4 WILD-TYPE 38 27
  SLC39A4 MUTATED SLC39A4 WILD-TYPE 
                4                65 
  SLC39A4 MUTATED SLC39A4 WILD-TYPE 
                2                27 
$`SLC39A4 MUTATED`
TCGA-F2-6879 TCGA-HZ-8002 TCGA-HZ-8636 TCGA-IB-7651 
       10.98         0.79         0.16        19.82 

$`SLC39A4 WILD-TYPE`
TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H TCGA-FB-A4P5 
        9.70        11.84         7.10         5.03        19.27         0.13 
TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR TCGA-FZ-5920 
       11.93        12.66         2.47         0.03         5.46         2.01 
TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7289 
       36.20        20.81        12.89         7.66        13.02         7.89 
TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 
        0.92         0.66         0.13         0.26        12.13        11.87 
TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 
        0.26         0.62         0.69         3.95         0.92         0.53 
TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 
        2.99         0.76         0.95         6.38         1.51        11.41 
TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7652 TCGA-IB-7885 
       49.38         4.77        21.90        15.35        15.65        27.98 
TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 
        4.04         3.62        43.79        15.81        19.66        16.04 
TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP 
        3.85        15.98         0.56        17.16        10.82         9.86 
TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W 
        7.20        15.12         0.26         1.35         4.18         3.62 
TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
        8.12        13.68        16.80        14.14        18.67 

  SLC39A4 MUTATED SLC39A4 WILD-TYPE 
             0.16              0.03 
  SLC39A4 MUTATED SLC39A4 WILD-TYPE 
            19.82             49.38 
  SLC39A4 MUTATED SLC39A4 WILD-TYPE 
            5.885             7.660 
[1] "0.2 - 19.8 (5.9)" "0.0 - 49.4 (7.7)"
       TCGA-F2-6879        TCGA-F2-6880        TCGA-F2-7273        TCGA-F2-7276 
  "SLC39A4 MUTATED" "SLC39A4 WILD-TYPE" "SLC39A4 WILD-TYPE" "SLC39A4 WILD-TYPE" 
       TCGA-F2-A44G        TCGA-F2-A44H        TCGA-FB-A4P5        TCGA-FB-A4P6 
"SLC39A4 WILD-TYPE" "SLC39A4 WILD-TYPE" "SLC39A4 WILD-TYPE" "SLC39A4 WILD-TYPE" 
       TCGA-FB-A545        TCGA-FB-A5VM        TCGA-FB-A78T        TCGA-FB-A7DR 
"SLC39A4 WILD-TYPE" "SLC39A4 WILD-TYPE" "SLC39A4 WILD-TYPE" "SLC39A4 WILD-TYPE" 
       TCGA-FZ-5920        TCGA-FZ-5922        TCGA-FZ-5923        TCGA-H6-8124 
"SLC39A4 WILD-TYPE" "SLC39A4 WILD-TYPE" "SLC39A4 WILD-TYPE" "SLC39A4 WILD-TYPE" 
       TCGA-H6-A45N        TCGA-H8-A6C1        TCGA-HZ-7289        TCGA-HZ-7918 
"SLC39A4 WILD-TYPE" "SLC39A4 WILD-TYPE" "SLC39A4 WILD-TYPE" "SLC39A4 WILD-TYPE" 
       TCGA-HZ-7919        TCGA-HZ-7922        TCGA-HZ-7923        TCGA-HZ-7924 
"SLC39A4 WILD-TYPE" "SLC39A4 WILD-TYPE" "SLC39A4 WILD-TYPE" "SLC39A4 WILD-TYPE" 
       TCGA-HZ-7925        TCGA-HZ-7926        TCGA-HZ-8001        TCGA-HZ-8002 
"SLC39A4 WILD-TYPE" "SLC39A4 WILD-TYPE" "SLC39A4 WILD-TYPE"   "SLC39A4 MUTATED" 
       TCGA-HZ-8003        TCGA-HZ-8005        TCGA-HZ-8315        TCGA-HZ-8317 
"SLC39A4 WILD-TYPE" "SLC39A4 WILD-TYPE" "SLC39A4 WILD-TYPE" "SLC39A4 WILD-TYPE" 
       TCGA-HZ-8636        TCGA-HZ-8638        TCGA-HZ-A49G        TCGA-HZ-A49H 
  "SLC39A4 MUTATED" "SLC39A4 WILD-TYPE" "SLC39A4 WILD-TYPE" "SLC39A4 WILD-TYPE" 
       TCGA-HZ-A4BH        TCGA-HZ-A4BK        TCGA-IB-7644        TCGA-IB-7645 
"SLC39A4 WILD-TYPE" "SLC39A4 WILD-TYPE" "SLC39A4 WILD-TYPE" "SLC39A4 WILD-TYPE" 
       TCGA-IB-7646        TCGA-IB-7647        TCGA-IB-7649        TCGA-IB-7651 
"SLC39A4 WILD-TYPE" "SLC39A4 WILD-TYPE" "SLC39A4 WILD-TYPE"   "SLC39A4 MUTATED" 
       TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-7886        TCGA-IB-7887 
"SLC39A4 WILD-TYPE" "SLC39A4 WILD-TYPE" "SLC39A4 WILD-TYPE" "SLC39A4 WILD-TYPE" 
       TCGA-IB-7888        TCGA-IB-7889        TCGA-IB-7890        TCGA-IB-7891 
"SLC39A4 WILD-TYPE" "SLC39A4 WILD-TYPE" "SLC39A4 WILD-TYPE" "SLC39A4 WILD-TYPE" 
       TCGA-IB-7893        TCGA-IB-7897        TCGA-IB-8126        TCGA-IB-8127 
"SLC39A4 WILD-TYPE" "SLC39A4 WILD-TYPE" "SLC39A4 WILD-TYPE" "SLC39A4 WILD-TYPE" 
       TCGA-IB-A5SO        TCGA-IB-A5SP        TCGA-IB-A5SQ        TCGA-IB-A5SS 
"SLC39A4 WILD-TYPE" "SLC39A4 WILD-TYPE" "SLC39A4 WILD-TYPE" "SLC39A4 WILD-TYPE" 
       TCGA-IB-A5ST        TCGA-IB-A6UG        TCGA-LB-A7SX        TCGA-OE-A75W 
"SLC39A4 WILD-TYPE" "SLC39A4 WILD-TYPE" "SLC39A4 WILD-TYPE" "SLC39A4 WILD-TYPE" 
       TCGA-PZ-A5RE        TCGA-Q3-A5QY        TCGA-US-A779        TCGA-US-A77E 
"SLC39A4 WILD-TYPE" "SLC39A4 WILD-TYPE" "SLC39A4 WILD-TYPE" "SLC39A4 WILD-TYPE" 
       TCGA-US-A77J 
"SLC39A4 WILD-TYPE" 
       TCGA-F2-6879        TCGA-F2-6880        TCGA-F2-7273        TCGA-F2-7276 
  "SLC39A4 MUTATED" "SLC39A4 WILD-TYPE" "SLC39A4 WILD-TYPE" "SLC39A4 WILD-TYPE" 
       TCGA-F2-A44G        TCGA-F2-A44H        TCGA-FB-A4P5        TCGA-FB-A4P6 
"SLC39A4 WILD-TYPE" "SLC39A4 WILD-TYPE" "SLC39A4 WILD-TYPE" "SLC39A4 WILD-TYPE" 
       TCGA-FB-A545        TCGA-FB-A5VM        TCGA-FB-A78T        TCGA-FB-A7DR 
"SLC39A4 WILD-TYPE" "SLC39A4 WILD-TYPE" "SLC39A4 WILD-TYPE" "SLC39A4 WILD-TYPE" 
       TCGA-FZ-5920        TCGA-FZ-5922        TCGA-FZ-5923        TCGA-H6-8124 
"SLC39A4 WILD-TYPE" "SLC39A4 WILD-TYPE" "SLC39A4 WILD-TYPE" "SLC39A4 WILD-TYPE" 
       TCGA-H6-A45N        TCGA-H8-A6C1        TCGA-HZ-7289        TCGA-HZ-7918 
"SLC39A4 WILD-TYPE" "SLC39A4 WILD-TYPE" "SLC39A4 WILD-TYPE" "SLC39A4 WILD-TYPE" 
       TCGA-HZ-7919        TCGA-HZ-7922        TCGA-HZ-7923        TCGA-HZ-7924 
"SLC39A4 WILD-TYPE" "SLC39A4 WILD-TYPE" "SLC39A4 WILD-TYPE" "SLC39A4 WILD-TYPE" 
       TCGA-HZ-7925        TCGA-HZ-7926        TCGA-HZ-8001        TCGA-HZ-8002 
"SLC39A4 WILD-TYPE" "SLC39A4 WILD-TYPE" "SLC39A4 WILD-TYPE"   "SLC39A4 MUTATED" 
       TCGA-HZ-8003        TCGA-HZ-8005        TCGA-HZ-8315        TCGA-HZ-8317 
"SLC39A4 WILD-TYPE" "SLC39A4 WILD-TYPE" "SLC39A4 WILD-TYPE" "SLC39A4 WILD-TYPE" 
       TCGA-HZ-8636        TCGA-HZ-8638        TCGA-HZ-A49G        TCGA-HZ-A49H 
  "SLC39A4 MUTATED" "SLC39A4 WILD-TYPE" "SLC39A4 WILD-TYPE" "SLC39A4 WILD-TYPE" 
       TCGA-HZ-A4BH        TCGA-HZ-A4BK        TCGA-IB-7644        TCGA-IB-7645 
"SLC39A4 WILD-TYPE" "SLC39A4 WILD-TYPE" "SLC39A4 WILD-TYPE" "SLC39A4 WILD-TYPE" 
       TCGA-IB-7646        TCGA-IB-7647        TCGA-IB-7649        TCGA-IB-7651 
"SLC39A4 WILD-TYPE" "SLC39A4 WILD-TYPE" "SLC39A4 WILD-TYPE"   "SLC39A4 MUTATED" 
       TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-7886        TCGA-IB-7887 
"SLC39A4 WILD-TYPE" "SLC39A4 WILD-TYPE" "SLC39A4 WILD-TYPE" "SLC39A4 WILD-TYPE" 
       TCGA-IB-7888        TCGA-IB-7889        TCGA-IB-7890        TCGA-IB-7891 
"SLC39A4 WILD-TYPE" "SLC39A4 WILD-TYPE" "SLC39A4 WILD-TYPE" "SLC39A4 WILD-TYPE" 
       TCGA-IB-7893        TCGA-IB-7897        TCGA-IB-8126        TCGA-IB-8127 
"SLC39A4 WILD-TYPE" "SLC39A4 WILD-TYPE" "SLC39A4 WILD-TYPE" "SLC39A4 WILD-TYPE" 
       TCGA-IB-A5SO        TCGA-IB-A5SP        TCGA-IB-A5SQ        TCGA-IB-A5SS 
"SLC39A4 WILD-TYPE" "SLC39A4 WILD-TYPE" "SLC39A4 WILD-TYPE" "SLC39A4 WILD-TYPE" 
       TCGA-IB-A5ST        TCGA-IB-A6UG        TCGA-LB-A7SX        TCGA-OE-A75W 
"SLC39A4 WILD-TYPE" "SLC39A4 WILD-TYPE" "SLC39A4 WILD-TYPE" "SLC39A4 WILD-TYPE" 
       TCGA-PZ-A5RE        TCGA-Q3-A5QY        TCGA-US-A779        TCGA-US-A77E 
"SLC39A4 WILD-TYPE" "SLC39A4 WILD-TYPE" "SLC39A4 WILD-TYPE" "SLC39A4 WILD-TYPE" 
       TCGA-US-A77J 
"SLC39A4 WILD-TYPE" 
       TCGA-F2-6879        TCGA-F2-6880        TCGA-F2-7273        TCGA-F2-7276 
  "SLC39A4 MUTATED" "SLC39A4 WILD-TYPE" "SLC39A4 WILD-TYPE" "SLC39A4 WILD-TYPE" 
       TCGA-F2-A44G        TCGA-F2-A44H        TCGA-FB-A4P5        TCGA-FB-A4P6 
"SLC39A4 WILD-TYPE" "SLC39A4 WILD-TYPE" "SLC39A4 WILD-TYPE" "SLC39A4 WILD-TYPE" 
       TCGA-FB-A545        TCGA-FB-A5VM        TCGA-FB-A78T        TCGA-FB-A7DR 
"SLC39A4 WILD-TYPE" "SLC39A4 WILD-TYPE" "SLC39A4 WILD-TYPE" "SLC39A4 WILD-TYPE" 
       TCGA-FZ-5920        TCGA-FZ-5922        TCGA-FZ-5923        TCGA-H6-8124 
"SLC39A4 WILD-TYPE" "SLC39A4 WILD-TYPE" "SLC39A4 WILD-TYPE" "SLC39A4 WILD-TYPE" 
       TCGA-H6-A45N        TCGA-H8-A6C1        TCGA-HZ-7289        TCGA-HZ-7918 
"SLC39A4 WILD-TYPE" "SLC39A4 WILD-TYPE" "SLC39A4 WILD-TYPE" "SLC39A4 WILD-TYPE" 
       TCGA-HZ-7919        TCGA-HZ-7922        TCGA-HZ-7923        TCGA-HZ-7924 
"SLC39A4 WILD-TYPE" "SLC39A4 WILD-TYPE" "SLC39A4 WILD-TYPE" "SLC39A4 WILD-TYPE" 
       TCGA-HZ-7925        TCGA-HZ-7926        TCGA-HZ-8001        TCGA-HZ-8002 
"SLC39A4 WILD-TYPE" "SLC39A4 WILD-TYPE" "SLC39A4 WILD-TYPE"   "SLC39A4 MUTATED" 
       TCGA-HZ-8003        TCGA-HZ-8005        TCGA-HZ-8315        TCGA-HZ-8317 
"SLC39A4 WILD-TYPE" "SLC39A4 WILD-TYPE" "SLC39A4 WILD-TYPE" "SLC39A4 WILD-TYPE" 
       TCGA-HZ-8636        TCGA-HZ-8638        TCGA-HZ-A49G        TCGA-HZ-A49H 
  "SLC39A4 MUTATED" "SLC39A4 WILD-TYPE" "SLC39A4 WILD-TYPE" "SLC39A4 WILD-TYPE" 
       TCGA-HZ-A4BH        TCGA-HZ-A4BK        TCGA-IB-7644        TCGA-IB-7645 
"SLC39A4 WILD-TYPE" "SLC39A4 WILD-TYPE" "SLC39A4 WILD-TYPE" "SLC39A4 WILD-TYPE" 
       TCGA-IB-7646        TCGA-IB-7647        TCGA-IB-7649        TCGA-IB-7651 
"SLC39A4 WILD-TYPE" "SLC39A4 WILD-TYPE" "SLC39A4 WILD-TYPE"   "SLC39A4 MUTATED" 
       TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-7886        TCGA-IB-7887 
"SLC39A4 WILD-TYPE" "SLC39A4 WILD-TYPE" "SLC39A4 WILD-TYPE" "SLC39A4 WILD-TYPE" 
       TCGA-IB-7888        TCGA-IB-7889        TCGA-IB-7890        TCGA-IB-7891 
"SLC39A4 WILD-TYPE" "SLC39A4 WILD-TYPE" "SLC39A4 WILD-TYPE" "SLC39A4 WILD-TYPE" 
       TCGA-IB-7893        TCGA-IB-7897        TCGA-IB-8126        TCGA-IB-8127 
"SLC39A4 WILD-TYPE" "SLC39A4 WILD-TYPE" "SLC39A4 WILD-TYPE" "SLC39A4 WILD-TYPE" 
       TCGA-IB-A5SO        TCGA-IB-A5SP        TCGA-IB-A5SQ        TCGA-IB-A5SS 
"SLC39A4 WILD-TYPE" "SLC39A4 WILD-TYPE" "SLC39A4 WILD-TYPE" "SLC39A4 WILD-TYPE" 
       TCGA-IB-A5ST        TCGA-IB-A6UG        TCGA-LB-A7SX        TCGA-OE-A75W 
"SLC39A4 WILD-TYPE" "SLC39A4 WILD-TYPE" "SLC39A4 WILD-TYPE" "SLC39A4 WILD-TYPE" 
       TCGA-PZ-A5RE        TCGA-Q3-A5QY        TCGA-US-A779        TCGA-US-A77E 
"SLC39A4 WILD-TYPE" "SLC39A4 WILD-TYPE" "SLC39A4 WILD-TYPE" "SLC39A4 WILD-TYPE" 
       TCGA-US-A77J 
"SLC39A4 WILD-TYPE" 
[1] "hr=" "1.4"
D387V2, continuous
                   vv
clus                STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  SLC39A4 MUTATED          0        0         0         3         0        1
  SLC39A4 WILD-TYPE        1        4        11        48         2        2
D387V3, multiclass
                   vv
clus                T1+T2 T3+T4
  SLC39A4 MUTATED       0     4
  SLC39A4 WILD-TYPE     6    62
D387V4, multiclass
       clus
vv      SLC39A4 MUTATED SLC39A4 WILD-TYPE
  T1+T2               0                 6
  T3+T4               4                62
D387V5, binary
                   cls
clus                 0  1
  SLC39A4 MUTATED    1  3
  SLC39A4 WILD-TYPE 16 51
[1] "tbl2"
                   cls
clus                [,1] [,2]
  SLC39A4 MUTATED      1    3
  SLC39A4 WILD-TYPE   16   51
   clus
vv  SLC39A4 MUTATED SLC39A4 WILD-TYPE
  0               1                16
  1               3                51
                   vv
clus                M0 M1 MX
  SLC39A4 MUTATED    2  1  1
  SLC39A4 WILD-TYPE 37  2 29
D387V6, multiclass
    clus
vv   SLC39A4 MUTATED SLC39A4 WILD-TYPE
  M0               2                37
  M1               1                 2
  MX               1                29
D387V7, binary
                   cls
clus                 0  1
  SLC39A4 MUTATED    2  2
  SLC39A4 WILD-TYPE 34 34
[1] "tbl2"
                   cls
clus                [,1] [,2]
  SLC39A4 MUTATED      2    2
  SLC39A4 WILD-TYPE   34   34
        clus
vv       SLC39A4 MUTATED SLC39A4 WILD-TYPE
  FEMALE               2                34
  MALE                 2                34
                   vv
clus                PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  SLC39A4 MUTATED                                     3
  SLC39A4 WILD-TYPE                                  62
                   vv
clus                PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  SLC39A4 MUTATED                                       0
  SLC39A4 WILD-TYPE                                     4
                   vv
clus                PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  SLC39A4 MUTATED                                                  0
  SLC39A4 WILD-TYPE                                                2
D387V8, multiclass
                                                  clus
vv                                                 SLC39A4 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                            3
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                          0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA               0
                                                  clus
vv                                                 SLC39A4 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                             62
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                            4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                 2
D387V9, continuous
[1] "Remove cluster labels:" "SLC39A4 MUTATED"       
clus
  SLC39A4 MUTATED SLC39A4 WILD-TYPE 
                1                21 
       TCGA-F2-6880        TCGA-FB-A4P5        TCGA-FB-A4P6        TCGA-FB-A5VM 
"SLC39A4 WILD-TYPE" "SLC39A4 WILD-TYPE" "SLC39A4 WILD-TYPE" "SLC39A4 WILD-TYPE" 
       TCGA-FB-A78T        TCGA-FB-A7DR        TCGA-H6-8124        TCGA-H6-A45N 
"SLC39A4 WILD-TYPE" "SLC39A4 WILD-TYPE" "SLC39A4 WILD-TYPE" "SLC39A4 WILD-TYPE" 
       TCGA-H8-A6C1        TCGA-IB-7644        TCGA-IB-7649        TCGA-IB-7885 
"SLC39A4 WILD-TYPE" "SLC39A4 WILD-TYPE" "SLC39A4 WILD-TYPE" "SLC39A4 WILD-TYPE" 
       TCGA-IB-7886        TCGA-IB-7887        TCGA-IB-7891        TCGA-IB-8126 
"SLC39A4 WILD-TYPE" "SLC39A4 WILD-TYPE" "SLC39A4 WILD-TYPE" "SLC39A4 WILD-TYPE" 
       TCGA-IB-8127        TCGA-IB-A5SS        TCGA-IB-A6UG        TCGA-LB-A7SX 
"SLC39A4 WILD-TYPE" "SLC39A4 WILD-TYPE" "SLC39A4 WILD-TYPE" "SLC39A4 WILD-TYPE" 
       TCGA-OE-A75W 
"SLC39A4 WILD-TYPE" 
D387V10, continuous
[1] "Remove cluster labels:" "SLC39A4 MUTATED"       
clus
  SLC39A4 MUTATED SLC39A4 WILD-TYPE 
                1                18 
       TCGA-FB-A4P5        TCGA-FB-A4P6        TCGA-FB-A5VM        TCGA-FB-A78T 
"SLC39A4 WILD-TYPE" "SLC39A4 WILD-TYPE" "SLC39A4 WILD-TYPE" "SLC39A4 WILD-TYPE" 
       TCGA-FB-A7DR        TCGA-H6-8124        TCGA-H8-A6C1        TCGA-IB-7644 
"SLC39A4 WILD-TYPE" "SLC39A4 WILD-TYPE" "SLC39A4 WILD-TYPE" "SLC39A4 WILD-TYPE" 
       TCGA-IB-7649        TCGA-IB-7885        TCGA-IB-7886        TCGA-IB-7891 
"SLC39A4 WILD-TYPE" "SLC39A4 WILD-TYPE" "SLC39A4 WILD-TYPE" "SLC39A4 WILD-TYPE" 
       TCGA-IB-8126        TCGA-IB-8127        TCGA-IB-A5SS        TCGA-IB-A6UG 
"SLC39A4 WILD-TYPE" "SLC39A4 WILD-TYPE" "SLC39A4 WILD-TYPE" "SLC39A4 WILD-TYPE" 
       TCGA-LB-A7SX        TCGA-OE-A75W 
"SLC39A4 WILD-TYPE" "SLC39A4 WILD-TYPE" 
                   vv
clus                R0 R1 RX
  SLC39A4 MUTATED    3  1  0
  SLC39A4 WILD-TYPE 39 23  2
D387V11, multiclass
    clus
vv   SLC39A4 MUTATED SLC39A4 WILD-TYPE
  R0               3                39
  R1               1                23
  RX               0                 2
D387V12, continuous

Clustering(388) Variable = TEAD4 MUTATION ANALYSIS
D388V1, survival
                 sevent
clus2              0  1
  TEAD4 MUTATED    2  1
  TEAD4 WILD-TYPE 38 28
  TEAD4 MUTATED TEAD4 WILD-TYPE 
              3              66 
  TEAD4 MUTATED TEAD4 WILD-TYPE 
              1              28 
$`TEAD4 MUTATED`
TCGA-IB-7651 TCGA-IB-8126 TCGA-IB-A5SP 
       19.82         0.56         9.86 

$`TEAD4 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P5 TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR 
        0.13        11.93        12.66         2.47         0.03         5.46 
TCGA-FZ-5920 TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 
        2.01        36.20        20.81        12.89         7.66        13.02 
TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 
        7.89         0.92         0.66         0.13         0.26        12.13 
TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 
       11.87         0.26         0.62         0.79         0.69         3.95 
TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H 
        0.92         0.53         0.16         2.99         0.76         0.95 
TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 
        6.38         1.51        11.41        49.38         4.77        21.90 
TCGA-IB-7649 TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7888 
       15.35        15.65        27.98         4.04         3.62        43.79 
TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-8127 
       15.81        19.66        16.04         3.85        15.98        17.16 
TCGA-IB-A5SO TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX 
       10.82         7.20        15.12         0.26         1.35         4.18 
TCGA-OE-A75W TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
        3.62         8.12        13.68        16.80        14.14        18.67 

  TEAD4 MUTATED TEAD4 WILD-TYPE 
           0.56            0.03 
  TEAD4 MUTATED TEAD4 WILD-TYPE 
          19.82           49.38 
  TEAD4 MUTATED TEAD4 WILD-TYPE 
           9.86            7.43 
[1] "0.6 - 19.8 (9.9)" "0.0 - 49.4 (7.4)"
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"TEAD4 WILD-TYPE" "TEAD4 WILD-TYPE" "TEAD4 WILD-TYPE" "TEAD4 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"TEAD4 WILD-TYPE" "TEAD4 WILD-TYPE" "TEAD4 WILD-TYPE" "TEAD4 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"TEAD4 WILD-TYPE" "TEAD4 WILD-TYPE" "TEAD4 WILD-TYPE" "TEAD4 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"TEAD4 WILD-TYPE" "TEAD4 WILD-TYPE" "TEAD4 WILD-TYPE" "TEAD4 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"TEAD4 WILD-TYPE" "TEAD4 WILD-TYPE" "TEAD4 WILD-TYPE" "TEAD4 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"TEAD4 WILD-TYPE" "TEAD4 WILD-TYPE" "TEAD4 WILD-TYPE" "TEAD4 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"TEAD4 WILD-TYPE" "TEAD4 WILD-TYPE" "TEAD4 WILD-TYPE" "TEAD4 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"TEAD4 WILD-TYPE" "TEAD4 WILD-TYPE" "TEAD4 WILD-TYPE" "TEAD4 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"TEAD4 WILD-TYPE" "TEAD4 WILD-TYPE" "TEAD4 WILD-TYPE" "TEAD4 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"TEAD4 WILD-TYPE" "TEAD4 WILD-TYPE" "TEAD4 WILD-TYPE" "TEAD4 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"TEAD4 WILD-TYPE" "TEAD4 WILD-TYPE" "TEAD4 WILD-TYPE"   "TEAD4 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"TEAD4 WILD-TYPE" "TEAD4 WILD-TYPE" "TEAD4 WILD-TYPE" "TEAD4 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"TEAD4 WILD-TYPE" "TEAD4 WILD-TYPE" "TEAD4 WILD-TYPE" "TEAD4 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"TEAD4 WILD-TYPE" "TEAD4 WILD-TYPE"   "TEAD4 MUTATED" "TEAD4 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"TEAD4 WILD-TYPE"   "TEAD4 MUTATED" "TEAD4 WILD-TYPE" "TEAD4 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"TEAD4 WILD-TYPE" "TEAD4 WILD-TYPE" "TEAD4 WILD-TYPE" "TEAD4 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"TEAD4 WILD-TYPE" "TEAD4 WILD-TYPE" "TEAD4 WILD-TYPE" "TEAD4 WILD-TYPE" 
     TCGA-US-A77J 
"TEAD4 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"TEAD4 WILD-TYPE" "TEAD4 WILD-TYPE" "TEAD4 WILD-TYPE" "TEAD4 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"TEAD4 WILD-TYPE" "TEAD4 WILD-TYPE" "TEAD4 WILD-TYPE" "TEAD4 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"TEAD4 WILD-TYPE" "TEAD4 WILD-TYPE" "TEAD4 WILD-TYPE" "TEAD4 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"TEAD4 WILD-TYPE" "TEAD4 WILD-TYPE" "TEAD4 WILD-TYPE" "TEAD4 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"TEAD4 WILD-TYPE" "TEAD4 WILD-TYPE" "TEAD4 WILD-TYPE" "TEAD4 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"TEAD4 WILD-TYPE" "TEAD4 WILD-TYPE" "TEAD4 WILD-TYPE" "TEAD4 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"TEAD4 WILD-TYPE" "TEAD4 WILD-TYPE" "TEAD4 WILD-TYPE" "TEAD4 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"TEAD4 WILD-TYPE" "TEAD4 WILD-TYPE" "TEAD4 WILD-TYPE" "TEAD4 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"TEAD4 WILD-TYPE" "TEAD4 WILD-TYPE" "TEAD4 WILD-TYPE" "TEAD4 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"TEAD4 WILD-TYPE" "TEAD4 WILD-TYPE" "TEAD4 WILD-TYPE" "TEAD4 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"TEAD4 WILD-TYPE" "TEAD4 WILD-TYPE" "TEAD4 WILD-TYPE"   "TEAD4 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"TEAD4 WILD-TYPE" "TEAD4 WILD-TYPE" "TEAD4 WILD-TYPE" "TEAD4 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"TEAD4 WILD-TYPE" "TEAD4 WILD-TYPE" "TEAD4 WILD-TYPE" "TEAD4 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"TEAD4 WILD-TYPE" "TEAD4 WILD-TYPE"   "TEAD4 MUTATED" "TEAD4 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"TEAD4 WILD-TYPE"   "TEAD4 MUTATED" "TEAD4 WILD-TYPE" "TEAD4 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"TEAD4 WILD-TYPE" "TEAD4 WILD-TYPE" "TEAD4 WILD-TYPE" "TEAD4 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"TEAD4 WILD-TYPE" "TEAD4 WILD-TYPE" "TEAD4 WILD-TYPE" "TEAD4 WILD-TYPE" 
     TCGA-US-A77J 
"TEAD4 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"TEAD4 WILD-TYPE" "TEAD4 WILD-TYPE" "TEAD4 WILD-TYPE" "TEAD4 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"TEAD4 WILD-TYPE" "TEAD4 WILD-TYPE" "TEAD4 WILD-TYPE" "TEAD4 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"TEAD4 WILD-TYPE" "TEAD4 WILD-TYPE" "TEAD4 WILD-TYPE" "TEAD4 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"TEAD4 WILD-TYPE" "TEAD4 WILD-TYPE" "TEAD4 WILD-TYPE" "TEAD4 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"TEAD4 WILD-TYPE" "TEAD4 WILD-TYPE" "TEAD4 WILD-TYPE" "TEAD4 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"TEAD4 WILD-TYPE" "TEAD4 WILD-TYPE" "TEAD4 WILD-TYPE" "TEAD4 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"TEAD4 WILD-TYPE" "TEAD4 WILD-TYPE" "TEAD4 WILD-TYPE" "TEAD4 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"TEAD4 WILD-TYPE" "TEAD4 WILD-TYPE" "TEAD4 WILD-TYPE" "TEAD4 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"TEAD4 WILD-TYPE" "TEAD4 WILD-TYPE" "TEAD4 WILD-TYPE" "TEAD4 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"TEAD4 WILD-TYPE" "TEAD4 WILD-TYPE" "TEAD4 WILD-TYPE" "TEAD4 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"TEAD4 WILD-TYPE" "TEAD4 WILD-TYPE" "TEAD4 WILD-TYPE"   "TEAD4 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"TEAD4 WILD-TYPE" "TEAD4 WILD-TYPE" "TEAD4 WILD-TYPE" "TEAD4 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"TEAD4 WILD-TYPE" "TEAD4 WILD-TYPE" "TEAD4 WILD-TYPE" "TEAD4 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"TEAD4 WILD-TYPE" "TEAD4 WILD-TYPE"   "TEAD4 MUTATED" "TEAD4 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"TEAD4 WILD-TYPE"   "TEAD4 MUTATED" "TEAD4 WILD-TYPE" "TEAD4 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"TEAD4 WILD-TYPE" "TEAD4 WILD-TYPE" "TEAD4 WILD-TYPE" "TEAD4 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"TEAD4 WILD-TYPE" "TEAD4 WILD-TYPE" "TEAD4 WILD-TYPE" "TEAD4 WILD-TYPE" 
     TCGA-US-A77J 
"TEAD4 WILD-TYPE" 
[1] "hr=" "1.5"
D388V2, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  TEAD4 MUTATED          0        0         1         1         1        0
  TEAD4 WILD-TYPE        1        4        10        50         1        3
D388V3, multiclass
                 vv
clus              T1+T2 T3+T4
  TEAD4 MUTATED       0     3
  TEAD4 WILD-TYPE     6    63
D388V4, multiclass
       clus
vv      TEAD4 MUTATED TEAD4 WILD-TYPE
  T1+T2             0               6
  T3+T4             3              63
D388V5, binary
                 cls
clus               0  1
  TEAD4 MUTATED    1  2
  TEAD4 WILD-TYPE 16 52
[1] "tbl2"
                 cls
clus              [,1] [,2]
  TEAD4 MUTATED      1    2
  TEAD4 WILD-TYPE   16   52
   clus
vv  TEAD4 MUTATED TEAD4 WILD-TYPE
  0             1              16
  1             2              52
                 vv
clus              M0 M1 MX
  TEAD4 MUTATED    3  0  0
  TEAD4 WILD-TYPE 36  3 30
D388V6, multiclass
    clus
vv   TEAD4 MUTATED TEAD4 WILD-TYPE
  M0             3              36
  M1             0               3
  MX             0              30
D388V7, binary
                 cls
clus               0  1
  TEAD4 MUTATED    2  1
  TEAD4 WILD-TYPE 34 35
[1] "tbl2"
                 cls
clus              [,1] [,2]
  TEAD4 MUTATED      2    1
  TEAD4 WILD-TYPE   34   35
        clus
vv       TEAD4 MUTATED TEAD4 WILD-TYPE
  FEMALE             2              34
  MALE               1              35
                 vv
clus              PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  TEAD4 MUTATED                                     3
  TEAD4 WILD-TYPE                                  62
                 vv
clus              PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  TEAD4 MUTATED                                       0
  TEAD4 WILD-TYPE                                     4
                 vv
clus              PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  TEAD4 MUTATED                                                  0
  TEAD4 WILD-TYPE                                                2
D388V8, multiclass
                                                  clus
vv                                                 TEAD4 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                          3
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                        0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA             0
                                                  clus
vv                                                 TEAD4 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                           62
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                          4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA               2
D388V9, continuous
[1] "Remove cluster labels:" "TEAD4 MUTATED"         
clus
  TEAD4 MUTATED TEAD4 WILD-TYPE 
              2              20 
     TCGA-F2-6880      TCGA-FB-A4P5      TCGA-FB-A4P6      TCGA-FB-A5VM 
"TEAD4 WILD-TYPE" "TEAD4 WILD-TYPE" "TEAD4 WILD-TYPE" "TEAD4 WILD-TYPE" 
     TCGA-FB-A78T      TCGA-FB-A7DR      TCGA-H6-8124      TCGA-H6-A45N 
"TEAD4 WILD-TYPE" "TEAD4 WILD-TYPE" "TEAD4 WILD-TYPE" "TEAD4 WILD-TYPE" 
     TCGA-H8-A6C1      TCGA-IB-7644      TCGA-IB-7649      TCGA-IB-7885 
"TEAD4 WILD-TYPE" "TEAD4 WILD-TYPE" "TEAD4 WILD-TYPE" "TEAD4 WILD-TYPE" 
     TCGA-IB-7886      TCGA-IB-7887      TCGA-IB-7891      TCGA-IB-8127 
"TEAD4 WILD-TYPE" "TEAD4 WILD-TYPE" "TEAD4 WILD-TYPE" "TEAD4 WILD-TYPE" 
     TCGA-IB-A5SS      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"TEAD4 WILD-TYPE" "TEAD4 WILD-TYPE" "TEAD4 WILD-TYPE" "TEAD4 WILD-TYPE" 
D388V10, continuous
[1] "Remove cluster labels:" "TEAD4 MUTATED"         
clus
  TEAD4 MUTATED TEAD4 WILD-TYPE 
              2              17 
     TCGA-FB-A4P5      TCGA-FB-A4P6      TCGA-FB-A5VM      TCGA-FB-A78T 
"TEAD4 WILD-TYPE" "TEAD4 WILD-TYPE" "TEAD4 WILD-TYPE" "TEAD4 WILD-TYPE" 
     TCGA-FB-A7DR      TCGA-H6-8124      TCGA-H8-A6C1      TCGA-IB-7644 
"TEAD4 WILD-TYPE" "TEAD4 WILD-TYPE" "TEAD4 WILD-TYPE" "TEAD4 WILD-TYPE" 
     TCGA-IB-7649      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7891 
"TEAD4 WILD-TYPE" "TEAD4 WILD-TYPE" "TEAD4 WILD-TYPE" "TEAD4 WILD-TYPE" 
     TCGA-IB-8127      TCGA-IB-A5SS      TCGA-IB-A6UG      TCGA-LB-A7SX 
"TEAD4 WILD-TYPE" "TEAD4 WILD-TYPE" "TEAD4 WILD-TYPE" "TEAD4 WILD-TYPE" 
     TCGA-OE-A75W 
"TEAD4 WILD-TYPE" 
                 vv
clus              R0 R1 RX
  TEAD4 MUTATED    1  2  0
  TEAD4 WILD-TYPE 41 22  2
D388V11, multiclass
    clus
vv   TEAD4 MUTATED TEAD4 WILD-TYPE
  R0             1              41
  R1             2              22
  RX             0               2
D388V12, continuous

Clustering(389) Variable = TDRD10 MUTATION ANALYSIS
D389V1, survival
                  sevent
clus2               0  1
  TDRD10 MUTATED    2  1
  TDRD10 WILD-TYPE 38 28
  TDRD10 MUTATED TDRD10 WILD-TYPE 
               3               66 
  TDRD10 MUTATED TDRD10 WILD-TYPE 
               1               28 
$`TDRD10 MUTATED`
TCGA-IB-7885 TCGA-IB-7888 TCGA-IB-8127 
       27.98        43.79        17.16 

$`TDRD10 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P5 TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR 
        0.13        11.93        12.66         2.47         0.03         5.46 
TCGA-FZ-5920 TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 
        2.01        36.20        20.81        12.89         7.66        13.02 
TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 
        7.89         0.92         0.66         0.13         0.26        12.13 
TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 
       11.87         0.26         0.62         0.79         0.69         3.95 
TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H 
        0.92         0.53         0.16         2.99         0.76         0.95 
TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 
        6.38         1.51        11.41        49.38         4.77        21.90 
TCGA-IB-7649 TCGA-IB-7651 TCGA-IB-7652 TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7889 
       15.35        19.82        15.65         4.04         3.62        15.81 
TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-A5SO 
       19.66        16.04         3.85        15.98         0.56        10.82 
TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX 
        9.86         7.20        15.12         0.26         1.35         4.18 
TCGA-OE-A75W TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
        3.62         8.12        13.68        16.80        14.14        18.67 

  TDRD10 MUTATED TDRD10 WILD-TYPE 
           17.16             0.03 
  TDRD10 MUTATED TDRD10 WILD-TYPE 
           43.79            49.38 
  TDRD10 MUTATED TDRD10 WILD-TYPE 
           27.98             7.15 
[1] "17.2 - 43.8 (28.0)" "0.0 - 49.4 (7.2)"  
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
"TDRD10 WILD-TYPE" "TDRD10 WILD-TYPE" "TDRD10 WILD-TYPE" "TDRD10 WILD-TYPE" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"TDRD10 WILD-TYPE" "TDRD10 WILD-TYPE" "TDRD10 WILD-TYPE" "TDRD10 WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
"TDRD10 WILD-TYPE" "TDRD10 WILD-TYPE" "TDRD10 WILD-TYPE" "TDRD10 WILD-TYPE" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"TDRD10 WILD-TYPE" "TDRD10 WILD-TYPE" "TDRD10 WILD-TYPE" "TDRD10 WILD-TYPE" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
"TDRD10 WILD-TYPE" "TDRD10 WILD-TYPE" "TDRD10 WILD-TYPE" "TDRD10 WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
"TDRD10 WILD-TYPE" "TDRD10 WILD-TYPE" "TDRD10 WILD-TYPE" "TDRD10 WILD-TYPE" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"TDRD10 WILD-TYPE" "TDRD10 WILD-TYPE" "TDRD10 WILD-TYPE" "TDRD10 WILD-TYPE" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
"TDRD10 WILD-TYPE" "TDRD10 WILD-TYPE" "TDRD10 WILD-TYPE" "TDRD10 WILD-TYPE" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
"TDRD10 WILD-TYPE" "TDRD10 WILD-TYPE" "TDRD10 WILD-TYPE" "TDRD10 WILD-TYPE" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
"TDRD10 WILD-TYPE" "TDRD10 WILD-TYPE" "TDRD10 WILD-TYPE" "TDRD10 WILD-TYPE" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
"TDRD10 WILD-TYPE" "TDRD10 WILD-TYPE" "TDRD10 WILD-TYPE" "TDRD10 WILD-TYPE" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
"TDRD10 WILD-TYPE"   "TDRD10 MUTATED" "TDRD10 WILD-TYPE" "TDRD10 WILD-TYPE" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
  "TDRD10 MUTATED" "TDRD10 WILD-TYPE" "TDRD10 WILD-TYPE" "TDRD10 WILD-TYPE" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
"TDRD10 WILD-TYPE" "TDRD10 WILD-TYPE" "TDRD10 WILD-TYPE"   "TDRD10 MUTATED" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"TDRD10 WILD-TYPE" "TDRD10 WILD-TYPE" "TDRD10 WILD-TYPE" "TDRD10 WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"TDRD10 WILD-TYPE" "TDRD10 WILD-TYPE" "TDRD10 WILD-TYPE" "TDRD10 WILD-TYPE" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
"TDRD10 WILD-TYPE" "TDRD10 WILD-TYPE" "TDRD10 WILD-TYPE" "TDRD10 WILD-TYPE" 
      TCGA-US-A77J 
"TDRD10 WILD-TYPE" 
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
"TDRD10 WILD-TYPE" "TDRD10 WILD-TYPE" "TDRD10 WILD-TYPE" "TDRD10 WILD-TYPE" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"TDRD10 WILD-TYPE" "TDRD10 WILD-TYPE" "TDRD10 WILD-TYPE" "TDRD10 WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
"TDRD10 WILD-TYPE" "TDRD10 WILD-TYPE" "TDRD10 WILD-TYPE" "TDRD10 WILD-TYPE" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"TDRD10 WILD-TYPE" "TDRD10 WILD-TYPE" "TDRD10 WILD-TYPE" "TDRD10 WILD-TYPE" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
"TDRD10 WILD-TYPE" "TDRD10 WILD-TYPE" "TDRD10 WILD-TYPE" "TDRD10 WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
"TDRD10 WILD-TYPE" "TDRD10 WILD-TYPE" "TDRD10 WILD-TYPE" "TDRD10 WILD-TYPE" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"TDRD10 WILD-TYPE" "TDRD10 WILD-TYPE" "TDRD10 WILD-TYPE" "TDRD10 WILD-TYPE" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
"TDRD10 WILD-TYPE" "TDRD10 WILD-TYPE" "TDRD10 WILD-TYPE" "TDRD10 WILD-TYPE" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
"TDRD10 WILD-TYPE" "TDRD10 WILD-TYPE" "TDRD10 WILD-TYPE" "TDRD10 WILD-TYPE" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
"TDRD10 WILD-TYPE" "TDRD10 WILD-TYPE" "TDRD10 WILD-TYPE" "TDRD10 WILD-TYPE" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
"TDRD10 WILD-TYPE" "TDRD10 WILD-TYPE" "TDRD10 WILD-TYPE" "TDRD10 WILD-TYPE" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
"TDRD10 WILD-TYPE"   "TDRD10 MUTATED" "TDRD10 WILD-TYPE" "TDRD10 WILD-TYPE" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
  "TDRD10 MUTATED" "TDRD10 WILD-TYPE" "TDRD10 WILD-TYPE" "TDRD10 WILD-TYPE" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
"TDRD10 WILD-TYPE" "TDRD10 WILD-TYPE" "TDRD10 WILD-TYPE"   "TDRD10 MUTATED" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"TDRD10 WILD-TYPE" "TDRD10 WILD-TYPE" "TDRD10 WILD-TYPE" "TDRD10 WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"TDRD10 WILD-TYPE" "TDRD10 WILD-TYPE" "TDRD10 WILD-TYPE" "TDRD10 WILD-TYPE" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
"TDRD10 WILD-TYPE" "TDRD10 WILD-TYPE" "TDRD10 WILD-TYPE" "TDRD10 WILD-TYPE" 
      TCGA-US-A77J 
"TDRD10 WILD-TYPE" 
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
"TDRD10 WILD-TYPE" "TDRD10 WILD-TYPE" "TDRD10 WILD-TYPE" "TDRD10 WILD-TYPE" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"TDRD10 WILD-TYPE" "TDRD10 WILD-TYPE" "TDRD10 WILD-TYPE" "TDRD10 WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
"TDRD10 WILD-TYPE" "TDRD10 WILD-TYPE" "TDRD10 WILD-TYPE" "TDRD10 WILD-TYPE" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"TDRD10 WILD-TYPE" "TDRD10 WILD-TYPE" "TDRD10 WILD-TYPE" "TDRD10 WILD-TYPE" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
"TDRD10 WILD-TYPE" "TDRD10 WILD-TYPE" "TDRD10 WILD-TYPE" "TDRD10 WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
"TDRD10 WILD-TYPE" "TDRD10 WILD-TYPE" "TDRD10 WILD-TYPE" "TDRD10 WILD-TYPE" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"TDRD10 WILD-TYPE" "TDRD10 WILD-TYPE" "TDRD10 WILD-TYPE" "TDRD10 WILD-TYPE" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
"TDRD10 WILD-TYPE" "TDRD10 WILD-TYPE" "TDRD10 WILD-TYPE" "TDRD10 WILD-TYPE" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
"TDRD10 WILD-TYPE" "TDRD10 WILD-TYPE" "TDRD10 WILD-TYPE" "TDRD10 WILD-TYPE" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
"TDRD10 WILD-TYPE" "TDRD10 WILD-TYPE" "TDRD10 WILD-TYPE" "TDRD10 WILD-TYPE" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
"TDRD10 WILD-TYPE" "TDRD10 WILD-TYPE" "TDRD10 WILD-TYPE" "TDRD10 WILD-TYPE" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
"TDRD10 WILD-TYPE"   "TDRD10 MUTATED" "TDRD10 WILD-TYPE" "TDRD10 WILD-TYPE" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
  "TDRD10 MUTATED" "TDRD10 WILD-TYPE" "TDRD10 WILD-TYPE" "TDRD10 WILD-TYPE" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
"TDRD10 WILD-TYPE" "TDRD10 WILD-TYPE" "TDRD10 WILD-TYPE"   "TDRD10 MUTATED" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"TDRD10 WILD-TYPE" "TDRD10 WILD-TYPE" "TDRD10 WILD-TYPE" "TDRD10 WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"TDRD10 WILD-TYPE" "TDRD10 WILD-TYPE" "TDRD10 WILD-TYPE" "TDRD10 WILD-TYPE" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
"TDRD10 WILD-TYPE" "TDRD10 WILD-TYPE" "TDRD10 WILD-TYPE" "TDRD10 WILD-TYPE" 
      TCGA-US-A77J 
"TDRD10 WILD-TYPE" 
[1] "hr=" "5.9"
D389V2, continuous
                  vv
clus               STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  TDRD10 MUTATED          0        0         1         2         0        0
  TDRD10 WILD-TYPE        1        4        10        49         2        3
D389V3, multiclass
                  vv
clus               T1+T2 T3+T4
  TDRD10 MUTATED       0     3
  TDRD10 WILD-TYPE     6    63
D389V4, multiclass
       clus
vv      TDRD10 MUTATED TDRD10 WILD-TYPE
  T1+T2              0                6
  T3+T4              3               63
D389V5, binary
                  cls
clus                0  1
  TDRD10 MUTATED    1  2
  TDRD10 WILD-TYPE 16 52
[1] "tbl2"
                  cls
clus               [,1] [,2]
  TDRD10 MUTATED      1    2
  TDRD10 WILD-TYPE   16   52
   clus
vv  TDRD10 MUTATED TDRD10 WILD-TYPE
  0              1               16
  1              2               52
                  vv
clus               M0 M1 MX
  TDRD10 MUTATED    3  0  0
  TDRD10 WILD-TYPE 36  3 30
D389V6, multiclass
    clus
vv   TDRD10 MUTATED TDRD10 WILD-TYPE
  M0              3               36
  M1              0                3
  MX              0               30
D389V7, binary
                  cls
clus                0  1
  TDRD10 MUTATED    2  1
  TDRD10 WILD-TYPE 34 35
[1] "tbl2"
                  cls
clus               [,1] [,2]
  TDRD10 MUTATED      2    1
  TDRD10 WILD-TYPE   34   35
        clus
vv       TDRD10 MUTATED TDRD10 WILD-TYPE
  FEMALE              2               34
  MALE                1               35
                  vv
clus               PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  TDRD10 MUTATED                                     3
  TDRD10 WILD-TYPE                                  62
                  vv
clus               PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  TDRD10 MUTATED                                       0
  TDRD10 WILD-TYPE                                     4
                  vv
clus               PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  TDRD10 MUTATED                                                  0
  TDRD10 WILD-TYPE                                                2
D389V8, multiclass
                                                  clus
vv                                                 TDRD10 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                           3
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                         0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA              0
                                                  clus
vv                                                 TDRD10 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                            62
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                           4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                2
D389V9, continuous
[1] "Remove cluster labels:" "TDRD10 MUTATED"        
clus
  TDRD10 MUTATED TDRD10 WILD-TYPE 
               2               20 
      TCGA-F2-6880       TCGA-FB-A4P5       TCGA-FB-A4P6       TCGA-FB-A5VM 
"TDRD10 WILD-TYPE" "TDRD10 WILD-TYPE" "TDRD10 WILD-TYPE" "TDRD10 WILD-TYPE" 
      TCGA-FB-A78T       TCGA-FB-A7DR       TCGA-H6-8124       TCGA-H6-A45N 
"TDRD10 WILD-TYPE" "TDRD10 WILD-TYPE" "TDRD10 WILD-TYPE" "TDRD10 WILD-TYPE" 
      TCGA-H8-A6C1       TCGA-IB-7644       TCGA-IB-7649       TCGA-IB-7651 
"TDRD10 WILD-TYPE" "TDRD10 WILD-TYPE" "TDRD10 WILD-TYPE" "TDRD10 WILD-TYPE" 
      TCGA-IB-7886       TCGA-IB-7887       TCGA-IB-7891       TCGA-IB-8126 
"TDRD10 WILD-TYPE" "TDRD10 WILD-TYPE" "TDRD10 WILD-TYPE" "TDRD10 WILD-TYPE" 
      TCGA-IB-A5SS       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"TDRD10 WILD-TYPE" "TDRD10 WILD-TYPE" "TDRD10 WILD-TYPE" "TDRD10 WILD-TYPE" 
D389V10, continuous
[1] "Remove cluster labels:" "TDRD10 MUTATED"        
clus
  TDRD10 MUTATED TDRD10 WILD-TYPE 
               2               17 
      TCGA-FB-A4P5       TCGA-FB-A4P6       TCGA-FB-A5VM       TCGA-FB-A78T 
"TDRD10 WILD-TYPE" "TDRD10 WILD-TYPE" "TDRD10 WILD-TYPE" "TDRD10 WILD-TYPE" 
      TCGA-FB-A7DR       TCGA-H6-8124       TCGA-H8-A6C1       TCGA-IB-7644 
"TDRD10 WILD-TYPE" "TDRD10 WILD-TYPE" "TDRD10 WILD-TYPE" "TDRD10 WILD-TYPE" 
      TCGA-IB-7649       TCGA-IB-7651       TCGA-IB-7886       TCGA-IB-7891 
"TDRD10 WILD-TYPE" "TDRD10 WILD-TYPE" "TDRD10 WILD-TYPE" "TDRD10 WILD-TYPE" 
      TCGA-IB-8126       TCGA-IB-A5SS       TCGA-IB-A6UG       TCGA-LB-A7SX 
"TDRD10 WILD-TYPE" "TDRD10 WILD-TYPE" "TDRD10 WILD-TYPE" "TDRD10 WILD-TYPE" 
      TCGA-OE-A75W 
"TDRD10 WILD-TYPE" 
                  vv
clus               R0 R1 RX
  TDRD10 MUTATED    2  1  0
  TDRD10 WILD-TYPE 40 23  2
D389V11, multiclass
    clus
vv   TDRD10 MUTATED TDRD10 WILD-TYPE
  R0              2               40
  R1              1               23
  RX              0                2
D389V12, continuous

Clustering(390) Variable = TTF1 MUTATION ANALYSIS
D390V1, survival
                sevent
clus2             0  1
  TTF1 MUTATED    2  1
  TTF1 WILD-TYPE 38 28
  TTF1 MUTATED TTF1 WILD-TYPE 
             3             66 
  TTF1 MUTATED TTF1 WILD-TYPE 
             1             28 
$`TTF1 MUTATED`
TCGA-HZ-A4BH TCGA-IB-7651 TCGA-IB-7652 
        6.38        19.82        15.65 

$`TTF1 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P5 TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR 
        0.13        11.93        12.66         2.47         0.03         5.46 
TCGA-FZ-5920 TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 
        2.01        36.20        20.81        12.89         7.66        13.02 
TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 
        7.89         0.92         0.66         0.13         0.26        12.13 
TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 
       11.87         0.26         0.62         0.79         0.69         3.95 
TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H 
        0.92         0.53         0.16         2.99         0.76         0.95 
TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 
        1.51        11.41        49.38         4.77        21.90        15.35 
TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 
       27.98         4.04         3.62        43.79        15.81        19.66 
TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO 
       16.04         3.85        15.98         0.56        17.16        10.82 
TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX 
        9.86         7.20        15.12         0.26         1.35         4.18 
TCGA-OE-A75W TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
        3.62         8.12        13.68        16.80        14.14        18.67 

  TTF1 MUTATED TTF1 WILD-TYPE 
          6.38           0.03 
  TTF1 MUTATED TTF1 WILD-TYPE 
         19.82          49.38 
  TTF1 MUTATED TTF1 WILD-TYPE 
         15.65           7.43 
[1] "6.4 - 19.8 (15.7)" "0.0 - 49.4 (7.4)" 
    TCGA-F2-6879     TCGA-F2-6880     TCGA-F2-7273     TCGA-F2-7276 
"TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" 
    TCGA-F2-A44G     TCGA-F2-A44H     TCGA-FB-A4P5     TCGA-FB-A4P6 
"TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" 
    TCGA-FB-A545     TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-FB-A7DR 
"TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" 
    TCGA-FZ-5920     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-H6-8124 
"TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" 
    TCGA-H6-A45N     TCGA-H8-A6C1     TCGA-HZ-7289     TCGA-HZ-7918 
"TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" 
    TCGA-HZ-7919     TCGA-HZ-7922     TCGA-HZ-7923     TCGA-HZ-7924 
"TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" 
    TCGA-HZ-7925     TCGA-HZ-7926     TCGA-HZ-8001     TCGA-HZ-8002 
"TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" 
    TCGA-HZ-8003     TCGA-HZ-8005     TCGA-HZ-8315     TCGA-HZ-8317 
"TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" 
    TCGA-HZ-8636     TCGA-HZ-8638     TCGA-HZ-A49G     TCGA-HZ-A49H 
"TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" 
    TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-IB-7644     TCGA-IB-7645 
  "TTF1 MUTATED" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" 
    TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7651 
"TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE"   "TTF1 MUTATED" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887 
  "TTF1 MUTATED" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" 
    TCGA-IB-7888     TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891 
"TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" 
    TCGA-IB-7893     TCGA-IB-7897     TCGA-IB-8126     TCGA-IB-8127 
"TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" 
    TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS 
"TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" 
    TCGA-IB-A5ST     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
"TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" 
    TCGA-PZ-A5RE     TCGA-Q3-A5QY     TCGA-US-A779     TCGA-US-A77E 
"TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" 
    TCGA-US-A77J 
"TTF1 WILD-TYPE" 
    TCGA-F2-6879     TCGA-F2-6880     TCGA-F2-7273     TCGA-F2-7276 
"TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" 
    TCGA-F2-A44G     TCGA-F2-A44H     TCGA-FB-A4P5     TCGA-FB-A4P6 
"TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" 
    TCGA-FB-A545     TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-FB-A7DR 
"TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" 
    TCGA-FZ-5920     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-H6-8124 
"TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" 
    TCGA-H6-A45N     TCGA-H8-A6C1     TCGA-HZ-7289     TCGA-HZ-7918 
"TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" 
    TCGA-HZ-7919     TCGA-HZ-7922     TCGA-HZ-7923     TCGA-HZ-7924 
"TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" 
    TCGA-HZ-7925     TCGA-HZ-7926     TCGA-HZ-8001     TCGA-HZ-8002 
"TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" 
    TCGA-HZ-8003     TCGA-HZ-8005     TCGA-HZ-8315     TCGA-HZ-8317 
"TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" 
    TCGA-HZ-8636     TCGA-HZ-8638     TCGA-HZ-A49G     TCGA-HZ-A49H 
"TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" 
    TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-IB-7644     TCGA-IB-7645 
  "TTF1 MUTATED" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" 
    TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7651 
"TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE"   "TTF1 MUTATED" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887 
  "TTF1 MUTATED" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" 
    TCGA-IB-7888     TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891 
"TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" 
    TCGA-IB-7893     TCGA-IB-7897     TCGA-IB-8126     TCGA-IB-8127 
"TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" 
    TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS 
"TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" 
    TCGA-IB-A5ST     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
"TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" 
    TCGA-PZ-A5RE     TCGA-Q3-A5QY     TCGA-US-A779     TCGA-US-A77E 
"TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" 
    TCGA-US-A77J 
"TTF1 WILD-TYPE" 
    TCGA-F2-6879     TCGA-F2-6880     TCGA-F2-7273     TCGA-F2-7276 
"TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" 
    TCGA-F2-A44G     TCGA-F2-A44H     TCGA-FB-A4P5     TCGA-FB-A4P6 
"TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" 
    TCGA-FB-A545     TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-FB-A7DR 
"TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" 
    TCGA-FZ-5920     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-H6-8124 
"TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" 
    TCGA-H6-A45N     TCGA-H8-A6C1     TCGA-HZ-7289     TCGA-HZ-7918 
"TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" 
    TCGA-HZ-7919     TCGA-HZ-7922     TCGA-HZ-7923     TCGA-HZ-7924 
"TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" 
    TCGA-HZ-7925     TCGA-HZ-7926     TCGA-HZ-8001     TCGA-HZ-8002 
"TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" 
    TCGA-HZ-8003     TCGA-HZ-8005     TCGA-HZ-8315     TCGA-HZ-8317 
"TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" 
    TCGA-HZ-8636     TCGA-HZ-8638     TCGA-HZ-A49G     TCGA-HZ-A49H 
"TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" 
    TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-IB-7644     TCGA-IB-7645 
  "TTF1 MUTATED" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" 
    TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7651 
"TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE"   "TTF1 MUTATED" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887 
  "TTF1 MUTATED" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" 
    TCGA-IB-7888     TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891 
"TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" 
    TCGA-IB-7893     TCGA-IB-7897     TCGA-IB-8126     TCGA-IB-8127 
"TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" 
    TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS 
"TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" 
    TCGA-IB-A5ST     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
"TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" 
    TCGA-PZ-A5RE     TCGA-Q3-A5QY     TCGA-US-A779     TCGA-US-A77E 
"TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" 
    TCGA-US-A77J 
"TTF1 WILD-TYPE" 
[1] "hr=" "2"  
D390V2, continuous
                vv
clus             STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  TTF1 MUTATED          0        0         0         3         0        0
  TTF1 WILD-TYPE        1        4        11        48         2        3
D390V3, multiclass
                vv
clus             T1+T2 T3+T4
  TTF1 MUTATED       0     3
  TTF1 WILD-TYPE     6    63
D390V4, multiclass
       clus
vv      TTF1 MUTATED TTF1 WILD-TYPE
  T1+T2            0              6
  T3+T4            3             63
D390V5, binary
                cls
clus              0  1
  TTF1 MUTATED    0  3
  TTF1 WILD-TYPE 17 51
[1] "tbl2"
                cls
clus             [,1] [,2]
  TTF1 MUTATED      0    3
  TTF1 WILD-TYPE   17   51
   clus
vv  TTF1 MUTATED TTF1 WILD-TYPE
  0            0             17
  1            3             51
                vv
clus             M0 M1 MX
  TTF1 MUTATED    2  0  1
  TTF1 WILD-TYPE 37  3 29
D390V6, multiclass
    clus
vv   TTF1 MUTATED TTF1 WILD-TYPE
  M0            2             37
  M1            0              3
  MX            1             29
D390V7, binary
                cls
clus              0  1
  TTF1 MUTATED    2  1
  TTF1 WILD-TYPE 34 35
[1] "tbl2"
                cls
clus             [,1] [,2]
  TTF1 MUTATED      2    1
  TTF1 WILD-TYPE   34   35
        clus
vv       TTF1 MUTATED TTF1 WILD-TYPE
  FEMALE            2             34
  MALE              1             35
                vv
clus             PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  TTF1 MUTATED                                     3
  TTF1 WILD-TYPE                                  62
                vv
clus             PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  TTF1 MUTATED                                       0
  TTF1 WILD-TYPE                                     4
                vv
clus             PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  TTF1 MUTATED                                                  0
  TTF1 WILD-TYPE                                                2
D390V8, multiclass
                                                  clus
vv                                                 TTF1 MUTATED TTF1 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                         3             62
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                       0              4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA            0              2
D390V9, continuous
[1] "Remove cluster labels:" "TTF1 MUTATED"          
clus
  TTF1 MUTATED TTF1 WILD-TYPE 
             1             21 
    TCGA-F2-6880     TCGA-FB-A4P5     TCGA-FB-A4P6     TCGA-FB-A5VM 
"TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" 
    TCGA-FB-A78T     TCGA-FB-A7DR     TCGA-H6-8124     TCGA-H6-A45N 
"TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" 
    TCGA-H8-A6C1     TCGA-IB-7644     TCGA-IB-7649     TCGA-IB-7885 
"TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" 
    TCGA-IB-7886     TCGA-IB-7887     TCGA-IB-7891     TCGA-IB-8126 
"TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" 
    TCGA-IB-8127     TCGA-IB-A5SS     TCGA-IB-A6UG     TCGA-LB-A7SX 
"TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" 
    TCGA-OE-A75W 
"TTF1 WILD-TYPE" 
D390V10, continuous
[1] "Remove cluster labels:" "TTF1 MUTATED"          
clus
  TTF1 MUTATED TTF1 WILD-TYPE 
             1             18 
    TCGA-FB-A4P5     TCGA-FB-A4P6     TCGA-FB-A5VM     TCGA-FB-A78T 
"TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" 
    TCGA-FB-A7DR     TCGA-H6-8124     TCGA-H8-A6C1     TCGA-IB-7644 
"TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" 
    TCGA-IB-7649     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7891 
"TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" 
    TCGA-IB-8126     TCGA-IB-8127     TCGA-IB-A5SS     TCGA-IB-A6UG 
"TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" "TTF1 WILD-TYPE" 
    TCGA-LB-A7SX     TCGA-OE-A75W 
"TTF1 WILD-TYPE" "TTF1 WILD-TYPE" 
                vv
clus             R0 R1 RX
  TTF1 MUTATED    1  2  0
  TTF1 WILD-TYPE 41 22  2
D390V11, multiclass
    clus
vv   TTF1 MUTATED TTF1 WILD-TYPE
  R0            1             41
  R1            2             22
  RX            0              2
D390V12, continuous

Clustering(391) Variable = RAB11FIP1 MUTATION ANALYSIS
D391V1, survival
                     sevent
clus2                  0  1
  RAB11FIP1 MUTATED    3  2
  RAB11FIP1 WILD-TYPE 37 27
  RAB11FIP1 MUTATED RAB11FIP1 WILD-TYPE 
                  5                  64 
  RAB11FIP1 MUTATED RAB11FIP1 WILD-TYPE 
                  2                  27 
$`RAB11FIP1 MUTATED`
TCGA-H6-A45N TCGA-HZ-7922 TCGA-HZ-8315 TCGA-IB-7651 TCGA-Q3-A5QY 
        7.66         0.13         0.92        19.82        13.68 

$`RAB11FIP1 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P5 TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR 
        0.13        11.93        12.66         2.47         0.03         5.46 
TCGA-FZ-5920 TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 TCGA-H8-A6C1 TCGA-HZ-7289 
        2.01        36.20        20.81        12.89        13.02         7.89 
TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 
        0.92         0.66         0.26        12.13        11.87         0.26 
TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8317 TCGA-HZ-8636 
        0.62         0.79         0.69         3.95         0.53         0.16 
TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 
        2.99         0.76         0.95         6.38         1.51        11.41 
TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7652 TCGA-IB-7885 
       49.38         4.77        21.90        15.35        15.65        27.98 
TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 
        4.04         3.62        43.79        15.81        19.66        16.04 
TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP 
        3.85        15.98         0.56        17.16        10.82         9.86 
TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W 
        7.20        15.12         0.26         1.35         4.18         3.62 
TCGA-PZ-A5RE TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
        8.12        16.80        14.14        18.67 

  RAB11FIP1 MUTATED RAB11FIP1 WILD-TYPE 
               0.13                0.03 
  RAB11FIP1 MUTATED RAB11FIP1 WILD-TYPE 
              19.82               49.38 
  RAB11FIP1 MUTATED RAB11FIP1 WILD-TYPE 
              7.660               7.545 
[1] "0.1 - 19.8 (7.7)" "0.0 - 49.4 (7.5)"
         TCGA-F2-6879          TCGA-F2-6880          TCGA-F2-7273 
"RAB11FIP1 WILD-TYPE" "RAB11FIP1 WILD-TYPE" "RAB11FIP1 WILD-TYPE" 
         TCGA-F2-7276          TCGA-F2-A44G          TCGA-F2-A44H 
"RAB11FIP1 WILD-TYPE" "RAB11FIP1 WILD-TYPE" "RAB11FIP1 WILD-TYPE" 
         TCGA-FB-A4P5          TCGA-FB-A4P6          TCGA-FB-A545 
"RAB11FIP1 WILD-TYPE" "RAB11FIP1 WILD-TYPE" "RAB11FIP1 WILD-TYPE" 
         TCGA-FB-A5VM          TCGA-FB-A78T          TCGA-FB-A7DR 
"RAB11FIP1 WILD-TYPE" "RAB11FIP1 WILD-TYPE" "RAB11FIP1 WILD-TYPE" 
         TCGA-FZ-5920          TCGA-FZ-5922          TCGA-FZ-5923 
"RAB11FIP1 WILD-TYPE" "RAB11FIP1 WILD-TYPE" "RAB11FIP1 WILD-TYPE" 
         TCGA-H6-8124          TCGA-H6-A45N          TCGA-H8-A6C1 
"RAB11FIP1 WILD-TYPE"   "RAB11FIP1 MUTATED" "RAB11FIP1 WILD-TYPE" 
         TCGA-HZ-7289          TCGA-HZ-7918          TCGA-HZ-7919 
"RAB11FIP1 WILD-TYPE" "RAB11FIP1 WILD-TYPE" "RAB11FIP1 WILD-TYPE" 
         TCGA-HZ-7922          TCGA-HZ-7923          TCGA-HZ-7924 
  "RAB11FIP1 MUTATED" "RAB11FIP1 WILD-TYPE" "RAB11FIP1 WILD-TYPE" 
         TCGA-HZ-7925          TCGA-HZ-7926          TCGA-HZ-8001 
"RAB11FIP1 WILD-TYPE" "RAB11FIP1 WILD-TYPE" "RAB11FIP1 WILD-TYPE" 
         TCGA-HZ-8002          TCGA-HZ-8003          TCGA-HZ-8005 
"RAB11FIP1 WILD-TYPE" "RAB11FIP1 WILD-TYPE" "RAB11FIP1 WILD-TYPE" 
         TCGA-HZ-8315          TCGA-HZ-8317          TCGA-HZ-8636 
  "RAB11FIP1 MUTATED" "RAB11FIP1 WILD-TYPE" "RAB11FIP1 WILD-TYPE" 
         TCGA-HZ-8638          TCGA-HZ-A49G          TCGA-HZ-A49H 
"RAB11FIP1 WILD-TYPE" "RAB11FIP1 WILD-TYPE" "RAB11FIP1 WILD-TYPE" 
         TCGA-HZ-A4BH          TCGA-HZ-A4BK          TCGA-IB-7644 
"RAB11FIP1 WILD-TYPE" "RAB11FIP1 WILD-TYPE" "RAB11FIP1 WILD-TYPE" 
         TCGA-IB-7645          TCGA-IB-7646          TCGA-IB-7647 
"RAB11FIP1 WILD-TYPE" "RAB11FIP1 WILD-TYPE" "RAB11FIP1 WILD-TYPE" 
         TCGA-IB-7649          TCGA-IB-7651          TCGA-IB-7652 
"RAB11FIP1 WILD-TYPE"   "RAB11FIP1 MUTATED" "RAB11FIP1 WILD-TYPE" 
         TCGA-IB-7885          TCGA-IB-7886          TCGA-IB-7887 
"RAB11FIP1 WILD-TYPE" "RAB11FIP1 WILD-TYPE" "RAB11FIP1 WILD-TYPE" 
         TCGA-IB-7888          TCGA-IB-7889          TCGA-IB-7890 
"RAB11FIP1 WILD-TYPE" "RAB11FIP1 WILD-TYPE" "RAB11FIP1 WILD-TYPE" 
         TCGA-IB-7891          TCGA-IB-7893          TCGA-IB-7897 
"RAB11FIP1 WILD-TYPE" "RAB11FIP1 WILD-TYPE" "RAB11FIP1 WILD-TYPE" 
         TCGA-IB-8126          TCGA-IB-8127          TCGA-IB-A5SO 
"RAB11FIP1 WILD-TYPE" "RAB11FIP1 WILD-TYPE" "RAB11FIP1 WILD-TYPE" 
         TCGA-IB-A5SP          TCGA-IB-A5SQ          TCGA-IB-A5SS 
"RAB11FIP1 WILD-TYPE" "RAB11FIP1 WILD-TYPE" "RAB11FIP1 WILD-TYPE" 
         TCGA-IB-A5ST          TCGA-IB-A6UG          TCGA-LB-A7SX 
"RAB11FIP1 WILD-TYPE" "RAB11FIP1 WILD-TYPE" "RAB11FIP1 WILD-TYPE" 
         TCGA-OE-A75W          TCGA-PZ-A5RE          TCGA-Q3-A5QY 
"RAB11FIP1 WILD-TYPE" "RAB11FIP1 WILD-TYPE"   "RAB11FIP1 MUTATED" 
         TCGA-US-A779          TCGA-US-A77E          TCGA-US-A77J 
"RAB11FIP1 WILD-TYPE" "RAB11FIP1 WILD-TYPE" "RAB11FIP1 WILD-TYPE" 
         TCGA-F2-6879          TCGA-F2-6880          TCGA-F2-7273 
"RAB11FIP1 WILD-TYPE" "RAB11FIP1 WILD-TYPE" "RAB11FIP1 WILD-TYPE" 
         TCGA-F2-7276          TCGA-F2-A44G          TCGA-F2-A44H 
"RAB11FIP1 WILD-TYPE" "RAB11FIP1 WILD-TYPE" "RAB11FIP1 WILD-TYPE" 
         TCGA-FB-A4P5          TCGA-FB-A4P6          TCGA-FB-A545 
"RAB11FIP1 WILD-TYPE" "RAB11FIP1 WILD-TYPE" "RAB11FIP1 WILD-TYPE" 
         TCGA-FB-A5VM          TCGA-FB-A78T          TCGA-FB-A7DR 
"RAB11FIP1 WILD-TYPE" "RAB11FIP1 WILD-TYPE" "RAB11FIP1 WILD-TYPE" 
         TCGA-FZ-5920          TCGA-FZ-5922          TCGA-FZ-5923 
"RAB11FIP1 WILD-TYPE" "RAB11FIP1 WILD-TYPE" "RAB11FIP1 WILD-TYPE" 
         TCGA-H6-8124          TCGA-H6-A45N          TCGA-H8-A6C1 
"RAB11FIP1 WILD-TYPE"   "RAB11FIP1 MUTATED" "RAB11FIP1 WILD-TYPE" 
         TCGA-HZ-7289          TCGA-HZ-7918          TCGA-HZ-7919 
"RAB11FIP1 WILD-TYPE" "RAB11FIP1 WILD-TYPE" "RAB11FIP1 WILD-TYPE" 
         TCGA-HZ-7922          TCGA-HZ-7923          TCGA-HZ-7924 
  "RAB11FIP1 MUTATED" "RAB11FIP1 WILD-TYPE" "RAB11FIP1 WILD-TYPE" 
         TCGA-HZ-7925          TCGA-HZ-7926          TCGA-HZ-8001 
"RAB11FIP1 WILD-TYPE" "RAB11FIP1 WILD-TYPE" "RAB11FIP1 WILD-TYPE" 
         TCGA-HZ-8002          TCGA-HZ-8003          TCGA-HZ-8005 
"RAB11FIP1 WILD-TYPE" "RAB11FIP1 WILD-TYPE" "RAB11FIP1 WILD-TYPE" 
         TCGA-HZ-8315          TCGA-HZ-8317          TCGA-HZ-8636 
  "RAB11FIP1 MUTATED" "RAB11FIP1 WILD-TYPE" "RAB11FIP1 WILD-TYPE" 
         TCGA-HZ-8638          TCGA-HZ-A49G          TCGA-HZ-A49H 
"RAB11FIP1 WILD-TYPE" "RAB11FIP1 WILD-TYPE" "RAB11FIP1 WILD-TYPE" 
         TCGA-HZ-A4BH          TCGA-HZ-A4BK          TCGA-IB-7644 
"RAB11FIP1 WILD-TYPE" "RAB11FIP1 WILD-TYPE" "RAB11FIP1 WILD-TYPE" 
         TCGA-IB-7645          TCGA-IB-7646          TCGA-IB-7647 
"RAB11FIP1 WILD-TYPE" "RAB11FIP1 WILD-TYPE" "RAB11FIP1 WILD-TYPE" 
         TCGA-IB-7649          TCGA-IB-7651          TCGA-IB-7652 
"RAB11FIP1 WILD-TYPE"   "RAB11FIP1 MUTATED" "RAB11FIP1 WILD-TYPE" 
         TCGA-IB-7885          TCGA-IB-7886          TCGA-IB-7887 
"RAB11FIP1 WILD-TYPE" "RAB11FIP1 WILD-TYPE" "RAB11FIP1 WILD-TYPE" 
         TCGA-IB-7888          TCGA-IB-7889          TCGA-IB-7890 
"RAB11FIP1 WILD-TYPE" "RAB11FIP1 WILD-TYPE" "RAB11FIP1 WILD-TYPE" 
         TCGA-IB-7891          TCGA-IB-7893          TCGA-IB-7897 
"RAB11FIP1 WILD-TYPE" "RAB11FIP1 WILD-TYPE" "RAB11FIP1 WILD-TYPE" 
         TCGA-IB-8126          TCGA-IB-8127          TCGA-IB-A5SO 
"RAB11FIP1 WILD-TYPE" "RAB11FIP1 WILD-TYPE" "RAB11FIP1 WILD-TYPE" 
         TCGA-IB-A5SP          TCGA-IB-A5SQ          TCGA-IB-A5SS 
"RAB11FIP1 WILD-TYPE" "RAB11FIP1 WILD-TYPE" "RAB11FIP1 WILD-TYPE" 
         TCGA-IB-A5ST          TCGA-IB-A6UG          TCGA-LB-A7SX 
"RAB11FIP1 WILD-TYPE" "RAB11FIP1 WILD-TYPE" "RAB11FIP1 WILD-TYPE" 
         TCGA-OE-A75W          TCGA-PZ-A5RE          TCGA-Q3-A5QY 
"RAB11FIP1 WILD-TYPE" "RAB11FIP1 WILD-TYPE"   "RAB11FIP1 MUTATED" 
         TCGA-US-A779          TCGA-US-A77E          TCGA-US-A77J 
"RAB11FIP1 WILD-TYPE" "RAB11FIP1 WILD-TYPE" "RAB11FIP1 WILD-TYPE" 
         TCGA-F2-6879          TCGA-F2-6880          TCGA-F2-7273 
"RAB11FIP1 WILD-TYPE" "RAB11FIP1 WILD-TYPE" "RAB11FIP1 WILD-TYPE" 
         TCGA-F2-7276          TCGA-F2-A44G          TCGA-F2-A44H 
"RAB11FIP1 WILD-TYPE" "RAB11FIP1 WILD-TYPE" "RAB11FIP1 WILD-TYPE" 
         TCGA-FB-A4P5          TCGA-FB-A4P6          TCGA-FB-A545 
"RAB11FIP1 WILD-TYPE" "RAB11FIP1 WILD-TYPE" "RAB11FIP1 WILD-TYPE" 
         TCGA-FB-A5VM          TCGA-FB-A78T          TCGA-FB-A7DR 
"RAB11FIP1 WILD-TYPE" "RAB11FIP1 WILD-TYPE" "RAB11FIP1 WILD-TYPE" 
         TCGA-FZ-5920          TCGA-FZ-5922          TCGA-FZ-5923 
"RAB11FIP1 WILD-TYPE" "RAB11FIP1 WILD-TYPE" "RAB11FIP1 WILD-TYPE" 
         TCGA-H6-8124          TCGA-H6-A45N          TCGA-H8-A6C1 
"RAB11FIP1 WILD-TYPE"   "RAB11FIP1 MUTATED" "RAB11FIP1 WILD-TYPE" 
         TCGA-HZ-7289          TCGA-HZ-7918          TCGA-HZ-7919 
"RAB11FIP1 WILD-TYPE" "RAB11FIP1 WILD-TYPE" "RAB11FIP1 WILD-TYPE" 
         TCGA-HZ-7922          TCGA-HZ-7923          TCGA-HZ-7924 
  "RAB11FIP1 MUTATED" "RAB11FIP1 WILD-TYPE" "RAB11FIP1 WILD-TYPE" 
         TCGA-HZ-7925          TCGA-HZ-7926          TCGA-HZ-8001 
"RAB11FIP1 WILD-TYPE" "RAB11FIP1 WILD-TYPE" "RAB11FIP1 WILD-TYPE" 
         TCGA-HZ-8002          TCGA-HZ-8003          TCGA-HZ-8005 
"RAB11FIP1 WILD-TYPE" "RAB11FIP1 WILD-TYPE" "RAB11FIP1 WILD-TYPE" 
         TCGA-HZ-8315          TCGA-HZ-8317          TCGA-HZ-8636 
  "RAB11FIP1 MUTATED" "RAB11FIP1 WILD-TYPE" "RAB11FIP1 WILD-TYPE" 
         TCGA-HZ-8638          TCGA-HZ-A49G          TCGA-HZ-A49H 
"RAB11FIP1 WILD-TYPE" "RAB11FIP1 WILD-TYPE" "RAB11FIP1 WILD-TYPE" 
         TCGA-HZ-A4BH          TCGA-HZ-A4BK          TCGA-IB-7644 
"RAB11FIP1 WILD-TYPE" "RAB11FIP1 WILD-TYPE" "RAB11FIP1 WILD-TYPE" 
         TCGA-IB-7645          TCGA-IB-7646          TCGA-IB-7647 
"RAB11FIP1 WILD-TYPE" "RAB11FIP1 WILD-TYPE" "RAB11FIP1 WILD-TYPE" 
         TCGA-IB-7649          TCGA-IB-7651          TCGA-IB-7652 
"RAB11FIP1 WILD-TYPE"   "RAB11FIP1 MUTATED" "RAB11FIP1 WILD-TYPE" 
         TCGA-IB-7885          TCGA-IB-7886          TCGA-IB-7887 
"RAB11FIP1 WILD-TYPE" "RAB11FIP1 WILD-TYPE" "RAB11FIP1 WILD-TYPE" 
         TCGA-IB-7888          TCGA-IB-7889          TCGA-IB-7890 
"RAB11FIP1 WILD-TYPE" "RAB11FIP1 WILD-TYPE" "RAB11FIP1 WILD-TYPE" 
         TCGA-IB-7891          TCGA-IB-7893          TCGA-IB-7897 
"RAB11FIP1 WILD-TYPE" "RAB11FIP1 WILD-TYPE" "RAB11FIP1 WILD-TYPE" 
         TCGA-IB-8126          TCGA-IB-8127          TCGA-IB-A5SO 
"RAB11FIP1 WILD-TYPE" "RAB11FIP1 WILD-TYPE" "RAB11FIP1 WILD-TYPE" 
         TCGA-IB-A5SP          TCGA-IB-A5SQ          TCGA-IB-A5SS 
"RAB11FIP1 WILD-TYPE" "RAB11FIP1 WILD-TYPE" "RAB11FIP1 WILD-TYPE" 
         TCGA-IB-A5ST          TCGA-IB-A6UG          TCGA-LB-A7SX 
"RAB11FIP1 WILD-TYPE" "RAB11FIP1 WILD-TYPE" "RAB11FIP1 WILD-TYPE" 
         TCGA-OE-A75W          TCGA-PZ-A5RE          TCGA-Q3-A5QY 
"RAB11FIP1 WILD-TYPE" "RAB11FIP1 WILD-TYPE"   "RAB11FIP1 MUTATED" 
         TCGA-US-A779          TCGA-US-A77E          TCGA-US-A77J 
"RAB11FIP1 WILD-TYPE" "RAB11FIP1 WILD-TYPE" "RAB11FIP1 WILD-TYPE" 
[1] "hr=" "1.1"
D391V2, continuous
                     vv
clus                  STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  RAB11FIP1 MUTATED          0        0         1         4         0        0
  RAB11FIP1 WILD-TYPE        1        4        10        47         2        3
D391V3, multiclass
                     vv
clus                  T1+T2 T3+T4
  RAB11FIP1 MUTATED       0     5
  RAB11FIP1 WILD-TYPE     6    61
D391V4, multiclass
       clus
vv      RAB11FIP1 MUTATED RAB11FIP1 WILD-TYPE
  T1+T2                 0                   6
  T3+T4                 5                  61
D391V5, binary
                     cls
clus                   0  1
  RAB11FIP1 MUTATED    1  4
  RAB11FIP1 WILD-TYPE 16 50
[1] "tbl2"
                     cls
clus                  [,1] [,2]
  RAB11FIP1 MUTATED      1    4
  RAB11FIP1 WILD-TYPE   16   50
   clus
vv  RAB11FIP1 MUTATED RAB11FIP1 WILD-TYPE
  0                 1                  16
  1                 4                  50
                     vv
clus                  M0 M1 MX
  RAB11FIP1 MUTATED    1  0  4
  RAB11FIP1 WILD-TYPE 38  3 26
D391V6, multiclass
    clus
vv   RAB11FIP1 MUTATED RAB11FIP1 WILD-TYPE
  M0                 1                  38
  M1                 0                   3
  MX                 4                  26
D391V7, binary
                     cls
clus                   0  1
  RAB11FIP1 MUTATED    4  1
  RAB11FIP1 WILD-TYPE 32 35
[1] "tbl2"
                     cls
clus                  [,1] [,2]
  RAB11FIP1 MUTATED      4    1
  RAB11FIP1 WILD-TYPE   32   35
        clus
vv       RAB11FIP1 MUTATED RAB11FIP1 WILD-TYPE
  FEMALE                 4                  32
  MALE                   1                  35
                     vv
clus                  PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  RAB11FIP1 MUTATED                                     4
  RAB11FIP1 WILD-TYPE                                  61
                     vv
clus                  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  RAB11FIP1 MUTATED                                       1
  RAB11FIP1 WILD-TYPE                                     3
                     vv
clus                  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  RAB11FIP1 MUTATED                                                  0
  RAB11FIP1 WILD-TYPE                                                2
D391V8, multiclass
                                                  clus
vv                                                 RAB11FIP1 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                              4
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                            1
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                 0
                                                  clus
vv                                                 RAB11FIP1 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                               61
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                              3
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                   2
D391V9, continuous
[1] "Remove cluster labels:" "RAB11FIP1 MUTATED"     
clus
  RAB11FIP1 MUTATED RAB11FIP1 WILD-TYPE 
                  2                  20 
         TCGA-F2-6880          TCGA-FB-A4P5          TCGA-FB-A4P6 
"RAB11FIP1 WILD-TYPE" "RAB11FIP1 WILD-TYPE" "RAB11FIP1 WILD-TYPE" 
         TCGA-FB-A5VM          TCGA-FB-A78T          TCGA-FB-A7DR 
"RAB11FIP1 WILD-TYPE" "RAB11FIP1 WILD-TYPE" "RAB11FIP1 WILD-TYPE" 
         TCGA-H6-8124          TCGA-H8-A6C1          TCGA-IB-7644 
"RAB11FIP1 WILD-TYPE" "RAB11FIP1 WILD-TYPE" "RAB11FIP1 WILD-TYPE" 
         TCGA-IB-7649          TCGA-IB-7885          TCGA-IB-7886 
"RAB11FIP1 WILD-TYPE" "RAB11FIP1 WILD-TYPE" "RAB11FIP1 WILD-TYPE" 
         TCGA-IB-7887          TCGA-IB-7891          TCGA-IB-8126 
"RAB11FIP1 WILD-TYPE" "RAB11FIP1 WILD-TYPE" "RAB11FIP1 WILD-TYPE" 
         TCGA-IB-8127          TCGA-IB-A5SS          TCGA-IB-A6UG 
"RAB11FIP1 WILD-TYPE" "RAB11FIP1 WILD-TYPE" "RAB11FIP1 WILD-TYPE" 
         TCGA-LB-A7SX          TCGA-OE-A75W 
"RAB11FIP1 WILD-TYPE" "RAB11FIP1 WILD-TYPE" 
D391V10, continuous
[1] "Remove cluster labels:" "RAB11FIP1 MUTATED"     
clus
  RAB11FIP1 MUTATED RAB11FIP1 WILD-TYPE 
                  1                  18 
         TCGA-FB-A4P5          TCGA-FB-A4P6          TCGA-FB-A5VM 
"RAB11FIP1 WILD-TYPE" "RAB11FIP1 WILD-TYPE" "RAB11FIP1 WILD-TYPE" 
         TCGA-FB-A78T          TCGA-FB-A7DR          TCGA-H6-8124 
"RAB11FIP1 WILD-TYPE" "RAB11FIP1 WILD-TYPE" "RAB11FIP1 WILD-TYPE" 
         TCGA-H8-A6C1          TCGA-IB-7644          TCGA-IB-7649 
"RAB11FIP1 WILD-TYPE" "RAB11FIP1 WILD-TYPE" "RAB11FIP1 WILD-TYPE" 
         TCGA-IB-7885          TCGA-IB-7886          TCGA-IB-7891 
"RAB11FIP1 WILD-TYPE" "RAB11FIP1 WILD-TYPE" "RAB11FIP1 WILD-TYPE" 
         TCGA-IB-8126          TCGA-IB-8127          TCGA-IB-A5SS 
"RAB11FIP1 WILD-TYPE" "RAB11FIP1 WILD-TYPE" "RAB11FIP1 WILD-TYPE" 
         TCGA-IB-A6UG          TCGA-LB-A7SX          TCGA-OE-A75W 
"RAB11FIP1 WILD-TYPE" "RAB11FIP1 WILD-TYPE" "RAB11FIP1 WILD-TYPE" 
                     vv
clus                  R0 R1 RX
  RAB11FIP1 MUTATED    3  1  0
  RAB11FIP1 WILD-TYPE 39 23  2
D391V11, multiclass
    clus
vv   RAB11FIP1 MUTATED RAB11FIP1 WILD-TYPE
  R0                 3                  39
  R1                 1                  23
  RX                 0                   2
D391V12, continuous

Clustering(392) Variable = HABP4 MUTATION ANALYSIS
D392V1, survival
                 sevent
clus2              0  1
  HABP4 MUTATED    4  1
  HABP4 WILD-TYPE 36 28
  HABP4 MUTATED HABP4 WILD-TYPE 
              5              64 
  HABP4 MUTATED HABP4 WILD-TYPE 
              1              28 
$`HABP4 MUTATED`
TCGA-H6-8124 TCGA-HZ-7919 TCGA-HZ-8317 TCGA-IB-7651 TCGA-IB-A5ST 
       12.89         0.66         0.53        19.82         0.26 

$`HABP4 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P5 TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR 
        0.13        11.93        12.66         2.47         0.03         5.46 
TCGA-FZ-5920 TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7289 
        2.01        36.20        20.81         7.66        13.02         7.89 
TCGA-HZ-7918 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 
        0.92         0.13         0.26        12.13        11.87         0.26 
TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8636 
        0.62         0.79         0.69         3.95         0.92         0.16 
TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 
        2.99         0.76         0.95         6.38         1.51        11.41 
TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7652 TCGA-IB-7885 
       49.38         4.77        21.90        15.35        15.65        27.98 
TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 
        4.04         3.62        43.79        15.81        19.66        16.04 
TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP 
        3.85        15.98         0.56        17.16        10.82         9.86 
TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W TCGA-PZ-A5RE 
        7.20        15.12         1.35         4.18         3.62         8.12 
TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
       13.68        16.80        14.14        18.67 

  HABP4 MUTATED HABP4 WILD-TYPE 
           0.26            0.03 
  HABP4 MUTATED HABP4 WILD-TYPE 
          19.82           49.38 
  HABP4 MUTATED HABP4 WILD-TYPE 
          0.660           7.775 
[1] "0.3 - 19.8 (0.7)" "0.0 - 49.4 (7.8)"
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"HABP4 WILD-TYPE" "HABP4 WILD-TYPE" "HABP4 WILD-TYPE" "HABP4 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"HABP4 WILD-TYPE" "HABP4 WILD-TYPE" "HABP4 WILD-TYPE" "HABP4 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"HABP4 WILD-TYPE" "HABP4 WILD-TYPE" "HABP4 WILD-TYPE" "HABP4 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"HABP4 WILD-TYPE" "HABP4 WILD-TYPE" "HABP4 WILD-TYPE"   "HABP4 MUTATED" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"HABP4 WILD-TYPE" "HABP4 WILD-TYPE" "HABP4 WILD-TYPE" "HABP4 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
  "HABP4 MUTATED" "HABP4 WILD-TYPE" "HABP4 WILD-TYPE" "HABP4 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"HABP4 WILD-TYPE" "HABP4 WILD-TYPE" "HABP4 WILD-TYPE" "HABP4 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"HABP4 WILD-TYPE" "HABP4 WILD-TYPE" "HABP4 WILD-TYPE"   "HABP4 MUTATED" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"HABP4 WILD-TYPE" "HABP4 WILD-TYPE" "HABP4 WILD-TYPE" "HABP4 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"HABP4 WILD-TYPE" "HABP4 WILD-TYPE" "HABP4 WILD-TYPE" "HABP4 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"HABP4 WILD-TYPE" "HABP4 WILD-TYPE" "HABP4 WILD-TYPE"   "HABP4 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"HABP4 WILD-TYPE" "HABP4 WILD-TYPE" "HABP4 WILD-TYPE" "HABP4 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"HABP4 WILD-TYPE" "HABP4 WILD-TYPE" "HABP4 WILD-TYPE" "HABP4 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"HABP4 WILD-TYPE" "HABP4 WILD-TYPE" "HABP4 WILD-TYPE" "HABP4 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"HABP4 WILD-TYPE" "HABP4 WILD-TYPE" "HABP4 WILD-TYPE" "HABP4 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
  "HABP4 MUTATED" "HABP4 WILD-TYPE" "HABP4 WILD-TYPE" "HABP4 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"HABP4 WILD-TYPE" "HABP4 WILD-TYPE" "HABP4 WILD-TYPE" "HABP4 WILD-TYPE" 
     TCGA-US-A77J 
"HABP4 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"HABP4 WILD-TYPE" "HABP4 WILD-TYPE" "HABP4 WILD-TYPE" "HABP4 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"HABP4 WILD-TYPE" "HABP4 WILD-TYPE" "HABP4 WILD-TYPE" "HABP4 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"HABP4 WILD-TYPE" "HABP4 WILD-TYPE" "HABP4 WILD-TYPE" "HABP4 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"HABP4 WILD-TYPE" "HABP4 WILD-TYPE" "HABP4 WILD-TYPE"   "HABP4 MUTATED" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"HABP4 WILD-TYPE" "HABP4 WILD-TYPE" "HABP4 WILD-TYPE" "HABP4 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
  "HABP4 MUTATED" "HABP4 WILD-TYPE" "HABP4 WILD-TYPE" "HABP4 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"HABP4 WILD-TYPE" "HABP4 WILD-TYPE" "HABP4 WILD-TYPE" "HABP4 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"HABP4 WILD-TYPE" "HABP4 WILD-TYPE" "HABP4 WILD-TYPE"   "HABP4 MUTATED" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"HABP4 WILD-TYPE" "HABP4 WILD-TYPE" "HABP4 WILD-TYPE" "HABP4 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"HABP4 WILD-TYPE" "HABP4 WILD-TYPE" "HABP4 WILD-TYPE" "HABP4 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"HABP4 WILD-TYPE" "HABP4 WILD-TYPE" "HABP4 WILD-TYPE"   "HABP4 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"HABP4 WILD-TYPE" "HABP4 WILD-TYPE" "HABP4 WILD-TYPE" "HABP4 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"HABP4 WILD-TYPE" "HABP4 WILD-TYPE" "HABP4 WILD-TYPE" "HABP4 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"HABP4 WILD-TYPE" "HABP4 WILD-TYPE" "HABP4 WILD-TYPE" "HABP4 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"HABP4 WILD-TYPE" "HABP4 WILD-TYPE" "HABP4 WILD-TYPE" "HABP4 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
  "HABP4 MUTATED" "HABP4 WILD-TYPE" "HABP4 WILD-TYPE" "HABP4 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"HABP4 WILD-TYPE" "HABP4 WILD-TYPE" "HABP4 WILD-TYPE" "HABP4 WILD-TYPE" 
     TCGA-US-A77J 
"HABP4 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"HABP4 WILD-TYPE" "HABP4 WILD-TYPE" "HABP4 WILD-TYPE" "HABP4 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"HABP4 WILD-TYPE" "HABP4 WILD-TYPE" "HABP4 WILD-TYPE" "HABP4 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"HABP4 WILD-TYPE" "HABP4 WILD-TYPE" "HABP4 WILD-TYPE" "HABP4 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"HABP4 WILD-TYPE" "HABP4 WILD-TYPE" "HABP4 WILD-TYPE"   "HABP4 MUTATED" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"HABP4 WILD-TYPE" "HABP4 WILD-TYPE" "HABP4 WILD-TYPE" "HABP4 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
  "HABP4 MUTATED" "HABP4 WILD-TYPE" "HABP4 WILD-TYPE" "HABP4 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"HABP4 WILD-TYPE" "HABP4 WILD-TYPE" "HABP4 WILD-TYPE" "HABP4 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"HABP4 WILD-TYPE" "HABP4 WILD-TYPE" "HABP4 WILD-TYPE"   "HABP4 MUTATED" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"HABP4 WILD-TYPE" "HABP4 WILD-TYPE" "HABP4 WILD-TYPE" "HABP4 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"HABP4 WILD-TYPE" "HABP4 WILD-TYPE" "HABP4 WILD-TYPE" "HABP4 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"HABP4 WILD-TYPE" "HABP4 WILD-TYPE" "HABP4 WILD-TYPE"   "HABP4 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"HABP4 WILD-TYPE" "HABP4 WILD-TYPE" "HABP4 WILD-TYPE" "HABP4 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"HABP4 WILD-TYPE" "HABP4 WILD-TYPE" "HABP4 WILD-TYPE" "HABP4 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"HABP4 WILD-TYPE" "HABP4 WILD-TYPE" "HABP4 WILD-TYPE" "HABP4 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"HABP4 WILD-TYPE" "HABP4 WILD-TYPE" "HABP4 WILD-TYPE" "HABP4 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
  "HABP4 MUTATED" "HABP4 WILD-TYPE" "HABP4 WILD-TYPE" "HABP4 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"HABP4 WILD-TYPE" "HABP4 WILD-TYPE" "HABP4 WILD-TYPE" "HABP4 WILD-TYPE" 
     TCGA-US-A77J 
"HABP4 WILD-TYPE" 
[1] "hr=" "1.6"
D392V2, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  HABP4 MUTATED          0        0         0         5         0        0
  HABP4 WILD-TYPE        1        4        11        46         2        3
D392V3, multiclass
                 vv
clus              T1+T2 T3+T4
  HABP4 MUTATED       0     5
  HABP4 WILD-TYPE     6    61
D392V4, multiclass
       clus
vv      HABP4 MUTATED HABP4 WILD-TYPE
  T1+T2             0               6
  T3+T4             5              61
D392V5, binary
                 cls
clus               0  1
  HABP4 MUTATED    0  5
  HABP4 WILD-TYPE 17 49
[1] "tbl2"
                 cls
clus              [,1] [,2]
  HABP4 MUTATED      0    5
  HABP4 WILD-TYPE   17   49
   clus
vv  HABP4 MUTATED HABP4 WILD-TYPE
  0             0              17
  1             5              49
                 vv
clus              M0 M1 MX
  HABP4 MUTATED    4  0  1
  HABP4 WILD-TYPE 35  3 29
D392V6, multiclass
    clus
vv   HABP4 MUTATED HABP4 WILD-TYPE
  M0             4              35
  M1             0               3
  MX             1              29
D392V7, binary
                 cls
clus               0  1
  HABP4 MUTATED    5  0
  HABP4 WILD-TYPE 31 36
[1] "tbl2"
                 cls
clus              [,1] [,2]
  HABP4 MUTATED      5    0
  HABP4 WILD-TYPE   31   36
        clus
vv       HABP4 MUTATED HABP4 WILD-TYPE
  FEMALE             5              31
  MALE               0              36
                 vv
clus              PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  HABP4 MUTATED                                     5
  HABP4 WILD-TYPE                                  60
                 vv
clus              PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  HABP4 MUTATED                                       0
  HABP4 WILD-TYPE                                     4
                 vv
clus              PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  HABP4 MUTATED                                                  0
  HABP4 WILD-TYPE                                                2
D392V8, multiclass
                                                  clus
vv                                                 HABP4 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                          5
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                        0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA             0
                                                  clus
vv                                                 HABP4 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                           60
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                          4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA               2
D392V9, continuous
[1] "Remove cluster labels:" "HABP4 MUTATED"         
clus
  HABP4 MUTATED HABP4 WILD-TYPE 
              2              20 
     TCGA-F2-6880      TCGA-FB-A4P5      TCGA-FB-A4P6      TCGA-FB-A5VM 
"HABP4 WILD-TYPE" "HABP4 WILD-TYPE" "HABP4 WILD-TYPE" "HABP4 WILD-TYPE" 
     TCGA-FB-A78T      TCGA-FB-A7DR      TCGA-H6-A45N      TCGA-H8-A6C1 
"HABP4 WILD-TYPE" "HABP4 WILD-TYPE" "HABP4 WILD-TYPE" "HABP4 WILD-TYPE" 
     TCGA-IB-7644      TCGA-IB-7649      TCGA-IB-7885      TCGA-IB-7886 
"HABP4 WILD-TYPE" "HABP4 WILD-TYPE" "HABP4 WILD-TYPE" "HABP4 WILD-TYPE" 
     TCGA-IB-7887      TCGA-IB-7891      TCGA-IB-8126      TCGA-IB-8127 
"HABP4 WILD-TYPE" "HABP4 WILD-TYPE" "HABP4 WILD-TYPE" "HABP4 WILD-TYPE" 
     TCGA-IB-A5SS      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"HABP4 WILD-TYPE" "HABP4 WILD-TYPE" "HABP4 WILD-TYPE" "HABP4 WILD-TYPE" 
D392V10, continuous
[1] "Remove cluster labels:" "HABP4 MUTATED"         
clus
  HABP4 MUTATED HABP4 WILD-TYPE 
              2              17 
     TCGA-FB-A4P5      TCGA-FB-A4P6      TCGA-FB-A5VM      TCGA-FB-A78T 
"HABP4 WILD-TYPE" "HABP4 WILD-TYPE" "HABP4 WILD-TYPE" "HABP4 WILD-TYPE" 
     TCGA-FB-A7DR      TCGA-H8-A6C1      TCGA-IB-7644      TCGA-IB-7649 
"HABP4 WILD-TYPE" "HABP4 WILD-TYPE" "HABP4 WILD-TYPE" "HABP4 WILD-TYPE" 
     TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7891      TCGA-IB-8126 
"HABP4 WILD-TYPE" "HABP4 WILD-TYPE" "HABP4 WILD-TYPE" "HABP4 WILD-TYPE" 
     TCGA-IB-8127      TCGA-IB-A5SS      TCGA-IB-A6UG      TCGA-LB-A7SX 
"HABP4 WILD-TYPE" "HABP4 WILD-TYPE" "HABP4 WILD-TYPE" "HABP4 WILD-TYPE" 
     TCGA-OE-A75W 
"HABP4 WILD-TYPE" 
                 vv
clus              R0 R1 RX
  HABP4 MUTATED    3  2  0
  HABP4 WILD-TYPE 39 22  2
D392V11, multiclass
    clus
vv   HABP4 MUTATED HABP4 WILD-TYPE
  R0             3              39
  R1             2              22
  RX             0               2
D392V12, continuous

Clustering(393) Variable = ATXN1 MUTATION ANALYSIS
D393V1, survival
                 sevent
clus2              0  1
  ATXN1 MUTATED    2  3
  ATXN1 WILD-TYPE 38 26
  ATXN1 MUTATED ATXN1 WILD-TYPE 
              5              64 
  ATXN1 MUTATED ATXN1 WILD-TYPE 
              3              26 
$`ATXN1 MUTATED`
TCGA-H6-A45N TCGA-HZ-8005 TCGA-HZ-A4BK TCGA-IB-7651 TCGA-IB-7885 
        7.66         3.95         1.51        19.82        27.98 

$`ATXN1 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P5 TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR 
        0.13        11.93        12.66         2.47         0.03         5.46 
TCGA-FZ-5920 TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 TCGA-H8-A6C1 TCGA-HZ-7289 
        2.01        36.20        20.81        12.89        13.02         7.89 
TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 
        0.92         0.66         0.13         0.26        12.13        11.87 
TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8315 TCGA-HZ-8317 
        0.26         0.62         0.79         0.69         0.92         0.53 
TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-IB-7644 
        0.16         2.99         0.76         0.95         6.38        11.41 
TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7652 TCGA-IB-7886 
       49.38         4.77        21.90        15.35        15.65         4.04 
TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-7893 
        3.62        43.79        15.81        19.66        16.04         3.85 
TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ 
       15.98         0.56        17.16        10.82         9.86         7.20 
TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W TCGA-PZ-A5RE 
       15.12         0.26         1.35         4.18         3.62         8.12 
TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
       13.68        16.80        14.14        18.67 

  ATXN1 MUTATED ATXN1 WILD-TYPE 
           1.51            0.03 
  ATXN1 MUTATED ATXN1 WILD-TYPE 
          27.98           49.38 
  ATXN1 MUTATED ATXN1 WILD-TYPE 
          7.660           7.545 
[1] "1.5 - 28.0 (7.7)" "0.0 - 49.4 (7.5)"
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"ATXN1 WILD-TYPE" "ATXN1 WILD-TYPE" "ATXN1 WILD-TYPE" "ATXN1 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"ATXN1 WILD-TYPE" "ATXN1 WILD-TYPE" "ATXN1 WILD-TYPE" "ATXN1 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"ATXN1 WILD-TYPE" "ATXN1 WILD-TYPE" "ATXN1 WILD-TYPE" "ATXN1 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"ATXN1 WILD-TYPE" "ATXN1 WILD-TYPE" "ATXN1 WILD-TYPE" "ATXN1 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
  "ATXN1 MUTATED" "ATXN1 WILD-TYPE" "ATXN1 WILD-TYPE" "ATXN1 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"ATXN1 WILD-TYPE" "ATXN1 WILD-TYPE" "ATXN1 WILD-TYPE" "ATXN1 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"ATXN1 WILD-TYPE" "ATXN1 WILD-TYPE" "ATXN1 WILD-TYPE" "ATXN1 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"ATXN1 WILD-TYPE"   "ATXN1 MUTATED" "ATXN1 WILD-TYPE" "ATXN1 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"ATXN1 WILD-TYPE" "ATXN1 WILD-TYPE" "ATXN1 WILD-TYPE" "ATXN1 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"ATXN1 WILD-TYPE"   "ATXN1 MUTATED" "ATXN1 WILD-TYPE" "ATXN1 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"ATXN1 WILD-TYPE" "ATXN1 WILD-TYPE" "ATXN1 WILD-TYPE"   "ATXN1 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"ATXN1 WILD-TYPE"   "ATXN1 MUTATED" "ATXN1 WILD-TYPE" "ATXN1 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"ATXN1 WILD-TYPE" "ATXN1 WILD-TYPE" "ATXN1 WILD-TYPE" "ATXN1 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"ATXN1 WILD-TYPE" "ATXN1 WILD-TYPE" "ATXN1 WILD-TYPE" "ATXN1 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"ATXN1 WILD-TYPE" "ATXN1 WILD-TYPE" "ATXN1 WILD-TYPE" "ATXN1 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"ATXN1 WILD-TYPE" "ATXN1 WILD-TYPE" "ATXN1 WILD-TYPE" "ATXN1 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"ATXN1 WILD-TYPE" "ATXN1 WILD-TYPE" "ATXN1 WILD-TYPE" "ATXN1 WILD-TYPE" 
     TCGA-US-A77J 
"ATXN1 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"ATXN1 WILD-TYPE" "ATXN1 WILD-TYPE" "ATXN1 WILD-TYPE" "ATXN1 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"ATXN1 WILD-TYPE" "ATXN1 WILD-TYPE" "ATXN1 WILD-TYPE" "ATXN1 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"ATXN1 WILD-TYPE" "ATXN1 WILD-TYPE" "ATXN1 WILD-TYPE" "ATXN1 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"ATXN1 WILD-TYPE" "ATXN1 WILD-TYPE" "ATXN1 WILD-TYPE" "ATXN1 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
  "ATXN1 MUTATED" "ATXN1 WILD-TYPE" "ATXN1 WILD-TYPE" "ATXN1 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"ATXN1 WILD-TYPE" "ATXN1 WILD-TYPE" "ATXN1 WILD-TYPE" "ATXN1 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"ATXN1 WILD-TYPE" "ATXN1 WILD-TYPE" "ATXN1 WILD-TYPE" "ATXN1 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"ATXN1 WILD-TYPE"   "ATXN1 MUTATED" "ATXN1 WILD-TYPE" "ATXN1 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"ATXN1 WILD-TYPE" "ATXN1 WILD-TYPE" "ATXN1 WILD-TYPE" "ATXN1 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"ATXN1 WILD-TYPE"   "ATXN1 MUTATED" "ATXN1 WILD-TYPE" "ATXN1 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"ATXN1 WILD-TYPE" "ATXN1 WILD-TYPE" "ATXN1 WILD-TYPE"   "ATXN1 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"ATXN1 WILD-TYPE"   "ATXN1 MUTATED" "ATXN1 WILD-TYPE" "ATXN1 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"ATXN1 WILD-TYPE" "ATXN1 WILD-TYPE" "ATXN1 WILD-TYPE" "ATXN1 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"ATXN1 WILD-TYPE" "ATXN1 WILD-TYPE" "ATXN1 WILD-TYPE" "ATXN1 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"ATXN1 WILD-TYPE" "ATXN1 WILD-TYPE" "ATXN1 WILD-TYPE" "ATXN1 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"ATXN1 WILD-TYPE" "ATXN1 WILD-TYPE" "ATXN1 WILD-TYPE" "ATXN1 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"ATXN1 WILD-TYPE" "ATXN1 WILD-TYPE" "ATXN1 WILD-TYPE" "ATXN1 WILD-TYPE" 
     TCGA-US-A77J 
"ATXN1 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"ATXN1 WILD-TYPE" "ATXN1 WILD-TYPE" "ATXN1 WILD-TYPE" "ATXN1 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"ATXN1 WILD-TYPE" "ATXN1 WILD-TYPE" "ATXN1 WILD-TYPE" "ATXN1 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"ATXN1 WILD-TYPE" "ATXN1 WILD-TYPE" "ATXN1 WILD-TYPE" "ATXN1 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"ATXN1 WILD-TYPE" "ATXN1 WILD-TYPE" "ATXN1 WILD-TYPE" "ATXN1 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
  "ATXN1 MUTATED" "ATXN1 WILD-TYPE" "ATXN1 WILD-TYPE" "ATXN1 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"ATXN1 WILD-TYPE" "ATXN1 WILD-TYPE" "ATXN1 WILD-TYPE" "ATXN1 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"ATXN1 WILD-TYPE" "ATXN1 WILD-TYPE" "ATXN1 WILD-TYPE" "ATXN1 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"ATXN1 WILD-TYPE"   "ATXN1 MUTATED" "ATXN1 WILD-TYPE" "ATXN1 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"ATXN1 WILD-TYPE" "ATXN1 WILD-TYPE" "ATXN1 WILD-TYPE" "ATXN1 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"ATXN1 WILD-TYPE"   "ATXN1 MUTATED" "ATXN1 WILD-TYPE" "ATXN1 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"ATXN1 WILD-TYPE" "ATXN1 WILD-TYPE" "ATXN1 WILD-TYPE"   "ATXN1 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"ATXN1 WILD-TYPE"   "ATXN1 MUTATED" "ATXN1 WILD-TYPE" "ATXN1 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"ATXN1 WILD-TYPE" "ATXN1 WILD-TYPE" "ATXN1 WILD-TYPE" "ATXN1 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"ATXN1 WILD-TYPE" "ATXN1 WILD-TYPE" "ATXN1 WILD-TYPE" "ATXN1 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"ATXN1 WILD-TYPE" "ATXN1 WILD-TYPE" "ATXN1 WILD-TYPE" "ATXN1 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"ATXN1 WILD-TYPE" "ATXN1 WILD-TYPE" "ATXN1 WILD-TYPE" "ATXN1 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"ATXN1 WILD-TYPE" "ATXN1 WILD-TYPE" "ATXN1 WILD-TYPE" "ATXN1 WILD-TYPE" 
     TCGA-US-A77J 
"ATXN1 WILD-TYPE" 
[1] "hr=" "1"  
D393V2, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  ATXN1 MUTATED          0        0         0         5         0        0
  ATXN1 WILD-TYPE        1        4        11        46         2        3
D393V3, multiclass
                 vv
clus              T1+T2 T3+T4
  ATXN1 MUTATED       0     5
  ATXN1 WILD-TYPE     6    61
D393V4, multiclass
       clus
vv      ATXN1 MUTATED ATXN1 WILD-TYPE
  T1+T2             0               6
  T3+T4             5              61
D393V5, binary
                 cls
clus               0  1
  ATXN1 MUTATED    0  5
  ATXN1 WILD-TYPE 17 49
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ATXN1 MUTATED      0    5
  ATXN1 WILD-TYPE   17   49
   clus
vv  ATXN1 MUTATED ATXN1 WILD-TYPE
  0             0              17
  1             5              49
                 vv
clus              M0 M1 MX
  ATXN1 MUTATED    2  0  3
  ATXN1 WILD-TYPE 37  3 27
D393V6, multiclass
    clus
vv   ATXN1 MUTATED ATXN1 WILD-TYPE
  M0             2              37
  M1             0               3
  MX             3              27
D393V7, binary
                 cls
clus               0  1
  ATXN1 MUTATED    3  2
  ATXN1 WILD-TYPE 33 34
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ATXN1 MUTATED      3    2
  ATXN1 WILD-TYPE   33   34
        clus
vv       ATXN1 MUTATED ATXN1 WILD-TYPE
  FEMALE             3              33
  MALE               2              34
                 vv
clus              PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  ATXN1 MUTATED                                     3
  ATXN1 WILD-TYPE                                  62
                 vv
clus              PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  ATXN1 MUTATED                                       2
  ATXN1 WILD-TYPE                                     2
                 vv
clus              PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  ATXN1 MUTATED                                                  0
  ATXN1 WILD-TYPE                                                2
D393V8, multiclass
                                                  clus
vv                                                 ATXN1 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                          3
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                        2
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA             0
                                                  clus
vv                                                 ATXN1 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                           62
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                          2
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA               2
D393V9, continuous
D393V10, continuous
[1] "Remove cluster labels:" "ATXN1 MUTATED"         
clus
  ATXN1 MUTATED ATXN1 WILD-TYPE 
              2              17 
     TCGA-FB-A4P5      TCGA-FB-A4P6      TCGA-FB-A5VM      TCGA-FB-A78T 
"ATXN1 WILD-TYPE" "ATXN1 WILD-TYPE" "ATXN1 WILD-TYPE" "ATXN1 WILD-TYPE" 
     TCGA-FB-A7DR      TCGA-H6-8124      TCGA-H8-A6C1      TCGA-IB-7644 
"ATXN1 WILD-TYPE" "ATXN1 WILD-TYPE" "ATXN1 WILD-TYPE" "ATXN1 WILD-TYPE" 
     TCGA-IB-7649      TCGA-IB-7886      TCGA-IB-7891      TCGA-IB-8126 
"ATXN1 WILD-TYPE" "ATXN1 WILD-TYPE" "ATXN1 WILD-TYPE" "ATXN1 WILD-TYPE" 
     TCGA-IB-8127      TCGA-IB-A5SS      TCGA-IB-A6UG      TCGA-LB-A7SX 
"ATXN1 WILD-TYPE" "ATXN1 WILD-TYPE" "ATXN1 WILD-TYPE" "ATXN1 WILD-TYPE" 
     TCGA-OE-A75W 
"ATXN1 WILD-TYPE" 
                 vv
clus              R0 R1 RX
  ATXN1 MUTATED    2  2  0
  ATXN1 WILD-TYPE 40 22  2
D393V11, multiclass
    clus
vv   ATXN1 MUTATED ATXN1 WILD-TYPE
  R0             2              40
  R1             2              22
  RX             0               2
D393V12, continuous

Clustering(394) Variable = PCDHA9 MUTATION ANALYSIS
D394V1, survival
                  sevent
clus2               0  1
  PCDHA9 MUTATED    3  5
  PCDHA9 WILD-TYPE 37 24
  PCDHA9 MUTATED PCDHA9 WILD-TYPE 
               8               61 
  PCDHA9 MUTATED PCDHA9 WILD-TYPE 
               5               24 
$`PCDHA9 MUTATED`
TCGA-F2-7276 TCGA-FB-A78T TCGA-FZ-5922 TCGA-HZ-7289 TCGA-HZ-8636 TCGA-IB-7644 
        7.10         0.03        36.20         7.89         0.16        11.41 
TCGA-IB-7651 TCGA-IB-7893 
       19.82         3.85 

$`PCDHA9 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-A44G TCGA-F2-A44H TCGA-FB-A4P5 
       10.98         9.70        11.84         5.03        19.27         0.13 
TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A7DR TCGA-FZ-5920 TCGA-FZ-5923 
       11.93        12.66         2.47         5.46         2.01        20.81 
TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7922 
       12.89         7.66        13.02         0.92         0.66         0.13 
TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 
        0.26        12.13        11.87         0.26         0.62         0.79 
TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8638 TCGA-HZ-A49G 
        0.69         3.95         0.92         0.53         2.99         0.76 
TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 
        0.95         6.38         1.51        49.38         4.77        21.90 
TCGA-IB-7649 TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7888 
       15.35        15.65        27.98         4.04         3.62        43.79 
TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-8127 
       15.81        19.66        16.04        15.98         0.56        17.16 
TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG 
       10.82         9.86         7.20        15.12         0.26         1.35 
TCGA-LB-A7SX TCGA-OE-A75W TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E 
        4.18         3.62         8.12        13.68        16.80        14.14 
TCGA-US-A77J 
       18.67 

  PCDHA9 MUTATED PCDHA9 WILD-TYPE 
            0.03             0.13 
  PCDHA9 MUTATED PCDHA9 WILD-TYPE 
           36.20            49.38 
  PCDHA9 MUTATED PCDHA9 WILD-TYPE 
           7.495            7.660 
[1] "0.0 - 36.2 (7.5)" "0.1 - 49.4 (7.7)"
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
"PCDHA9 WILD-TYPE" "PCDHA9 WILD-TYPE" "PCDHA9 WILD-TYPE"   "PCDHA9 MUTATED" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"PCDHA9 WILD-TYPE" "PCDHA9 WILD-TYPE" "PCDHA9 WILD-TYPE" "PCDHA9 WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
"PCDHA9 WILD-TYPE" "PCDHA9 WILD-TYPE"   "PCDHA9 MUTATED" "PCDHA9 WILD-TYPE" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"PCDHA9 WILD-TYPE"   "PCDHA9 MUTATED" "PCDHA9 WILD-TYPE" "PCDHA9 WILD-TYPE" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
"PCDHA9 WILD-TYPE" "PCDHA9 WILD-TYPE"   "PCDHA9 MUTATED" "PCDHA9 WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
"PCDHA9 WILD-TYPE" "PCDHA9 WILD-TYPE" "PCDHA9 WILD-TYPE" "PCDHA9 WILD-TYPE" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"PCDHA9 WILD-TYPE" "PCDHA9 WILD-TYPE" "PCDHA9 WILD-TYPE" "PCDHA9 WILD-TYPE" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
"PCDHA9 WILD-TYPE" "PCDHA9 WILD-TYPE" "PCDHA9 WILD-TYPE" "PCDHA9 WILD-TYPE" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
  "PCDHA9 MUTATED" "PCDHA9 WILD-TYPE" "PCDHA9 WILD-TYPE" "PCDHA9 WILD-TYPE" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
"PCDHA9 WILD-TYPE" "PCDHA9 WILD-TYPE"   "PCDHA9 MUTATED" "PCDHA9 WILD-TYPE" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
"PCDHA9 WILD-TYPE" "PCDHA9 WILD-TYPE" "PCDHA9 WILD-TYPE"   "PCDHA9 MUTATED" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
"PCDHA9 WILD-TYPE" "PCDHA9 WILD-TYPE" "PCDHA9 WILD-TYPE" "PCDHA9 WILD-TYPE" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
"PCDHA9 WILD-TYPE" "PCDHA9 WILD-TYPE" "PCDHA9 WILD-TYPE" "PCDHA9 WILD-TYPE" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
  "PCDHA9 MUTATED" "PCDHA9 WILD-TYPE" "PCDHA9 WILD-TYPE" "PCDHA9 WILD-TYPE" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"PCDHA9 WILD-TYPE" "PCDHA9 WILD-TYPE" "PCDHA9 WILD-TYPE" "PCDHA9 WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"PCDHA9 WILD-TYPE" "PCDHA9 WILD-TYPE" "PCDHA9 WILD-TYPE" "PCDHA9 WILD-TYPE" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
"PCDHA9 WILD-TYPE" "PCDHA9 WILD-TYPE" "PCDHA9 WILD-TYPE" "PCDHA9 WILD-TYPE" 
      TCGA-US-A77J 
"PCDHA9 WILD-TYPE" 
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
"PCDHA9 WILD-TYPE" "PCDHA9 WILD-TYPE" "PCDHA9 WILD-TYPE"   "PCDHA9 MUTATED" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"PCDHA9 WILD-TYPE" "PCDHA9 WILD-TYPE" "PCDHA9 WILD-TYPE" "PCDHA9 WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
"PCDHA9 WILD-TYPE" "PCDHA9 WILD-TYPE"   "PCDHA9 MUTATED" "PCDHA9 WILD-TYPE" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"PCDHA9 WILD-TYPE"   "PCDHA9 MUTATED" "PCDHA9 WILD-TYPE" "PCDHA9 WILD-TYPE" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
"PCDHA9 WILD-TYPE" "PCDHA9 WILD-TYPE"   "PCDHA9 MUTATED" "PCDHA9 WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
"PCDHA9 WILD-TYPE" "PCDHA9 WILD-TYPE" "PCDHA9 WILD-TYPE" "PCDHA9 WILD-TYPE" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"PCDHA9 WILD-TYPE" "PCDHA9 WILD-TYPE" "PCDHA9 WILD-TYPE" "PCDHA9 WILD-TYPE" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
"PCDHA9 WILD-TYPE" "PCDHA9 WILD-TYPE" "PCDHA9 WILD-TYPE" "PCDHA9 WILD-TYPE" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
  "PCDHA9 MUTATED" "PCDHA9 WILD-TYPE" "PCDHA9 WILD-TYPE" "PCDHA9 WILD-TYPE" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
"PCDHA9 WILD-TYPE" "PCDHA9 WILD-TYPE"   "PCDHA9 MUTATED" "PCDHA9 WILD-TYPE" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
"PCDHA9 WILD-TYPE" "PCDHA9 WILD-TYPE" "PCDHA9 WILD-TYPE"   "PCDHA9 MUTATED" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
"PCDHA9 WILD-TYPE" "PCDHA9 WILD-TYPE" "PCDHA9 WILD-TYPE" "PCDHA9 WILD-TYPE" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
"PCDHA9 WILD-TYPE" "PCDHA9 WILD-TYPE" "PCDHA9 WILD-TYPE" "PCDHA9 WILD-TYPE" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
  "PCDHA9 MUTATED" "PCDHA9 WILD-TYPE" "PCDHA9 WILD-TYPE" "PCDHA9 WILD-TYPE" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"PCDHA9 WILD-TYPE" "PCDHA9 WILD-TYPE" "PCDHA9 WILD-TYPE" "PCDHA9 WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"PCDHA9 WILD-TYPE" "PCDHA9 WILD-TYPE" "PCDHA9 WILD-TYPE" "PCDHA9 WILD-TYPE" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
"PCDHA9 WILD-TYPE" "PCDHA9 WILD-TYPE" "PCDHA9 WILD-TYPE" "PCDHA9 WILD-TYPE" 
      TCGA-US-A77J 
"PCDHA9 WILD-TYPE" 
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
"PCDHA9 WILD-TYPE" "PCDHA9 WILD-TYPE" "PCDHA9 WILD-TYPE"   "PCDHA9 MUTATED" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"PCDHA9 WILD-TYPE" "PCDHA9 WILD-TYPE" "PCDHA9 WILD-TYPE" "PCDHA9 WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
"PCDHA9 WILD-TYPE" "PCDHA9 WILD-TYPE"   "PCDHA9 MUTATED" "PCDHA9 WILD-TYPE" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"PCDHA9 WILD-TYPE"   "PCDHA9 MUTATED" "PCDHA9 WILD-TYPE" "PCDHA9 WILD-TYPE" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
"PCDHA9 WILD-TYPE" "PCDHA9 WILD-TYPE"   "PCDHA9 MUTATED" "PCDHA9 WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
"PCDHA9 WILD-TYPE" "PCDHA9 WILD-TYPE" "PCDHA9 WILD-TYPE" "PCDHA9 WILD-TYPE" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"PCDHA9 WILD-TYPE" "PCDHA9 WILD-TYPE" "PCDHA9 WILD-TYPE" "PCDHA9 WILD-TYPE" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
"PCDHA9 WILD-TYPE" "PCDHA9 WILD-TYPE" "PCDHA9 WILD-TYPE" "PCDHA9 WILD-TYPE" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
  "PCDHA9 MUTATED" "PCDHA9 WILD-TYPE" "PCDHA9 WILD-TYPE" "PCDHA9 WILD-TYPE" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
"PCDHA9 WILD-TYPE" "PCDHA9 WILD-TYPE"   "PCDHA9 MUTATED" "PCDHA9 WILD-TYPE" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
"PCDHA9 WILD-TYPE" "PCDHA9 WILD-TYPE" "PCDHA9 WILD-TYPE"   "PCDHA9 MUTATED" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
"PCDHA9 WILD-TYPE" "PCDHA9 WILD-TYPE" "PCDHA9 WILD-TYPE" "PCDHA9 WILD-TYPE" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
"PCDHA9 WILD-TYPE" "PCDHA9 WILD-TYPE" "PCDHA9 WILD-TYPE" "PCDHA9 WILD-TYPE" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
  "PCDHA9 MUTATED" "PCDHA9 WILD-TYPE" "PCDHA9 WILD-TYPE" "PCDHA9 WILD-TYPE" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"PCDHA9 WILD-TYPE" "PCDHA9 WILD-TYPE" "PCDHA9 WILD-TYPE" "PCDHA9 WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"PCDHA9 WILD-TYPE" "PCDHA9 WILD-TYPE" "PCDHA9 WILD-TYPE" "PCDHA9 WILD-TYPE" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
"PCDHA9 WILD-TYPE" "PCDHA9 WILD-TYPE" "PCDHA9 WILD-TYPE" "PCDHA9 WILD-TYPE" 
      TCGA-US-A77J 
"PCDHA9 WILD-TYPE" 
[1] "hr=" "1.3"
D394V2, continuous
                  vv
clus               STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  PCDHA9 MUTATED          0        0         2         4         0        2
  PCDHA9 WILD-TYPE        1        4         9        47         2        1
D394V3, multiclass
                  vv
clus               T1+T2 T3+T4
  PCDHA9 MUTATED       0     8
  PCDHA9 WILD-TYPE     6    58
D394V4, multiclass
       clus
vv      PCDHA9 MUTATED PCDHA9 WILD-TYPE
  T1+T2              0                6
  T3+T4              8               58
D394V5, binary
                  cls
clus                0  1
  PCDHA9 MUTATED    3  5
  PCDHA9 WILD-TYPE 14 49
[1] "tbl2"
                  cls
clus               [,1] [,2]
  PCDHA9 MUTATED      3    5
  PCDHA9 WILD-TYPE   14   49
   clus
vv  PCDHA9 MUTATED PCDHA9 WILD-TYPE
  0              3               14
  1              5               49
                  vv
clus               M0 M1 MX
  PCDHA9 MUTATED    5  2  1
  PCDHA9 WILD-TYPE 34  1 29
D394V6, multiclass
    clus
vv   PCDHA9 MUTATED PCDHA9 WILD-TYPE
  M0              5               34
  M1              2                1
  MX              1               29
D394V7, binary
                  cls
clus                0  1
  PCDHA9 MUTATED    4  4
  PCDHA9 WILD-TYPE 32 32
[1] "tbl2"
                  cls
clus               [,1] [,2]
  PCDHA9 MUTATED      4    4
  PCDHA9 WILD-TYPE   32   32
        clus
vv       PCDHA9 MUTATED PCDHA9 WILD-TYPE
  FEMALE              4               32
  MALE                4               32
                  vv
clus               PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  PCDHA9 MUTATED                                     7
  PCDHA9 WILD-TYPE                                  58
                  vv
clus               PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  PCDHA9 MUTATED                                       1
  PCDHA9 WILD-TYPE                                     3
                  vv
clus               PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  PCDHA9 MUTATED                                                  0
  PCDHA9 WILD-TYPE                                                2
D394V8, multiclass
                                                  clus
vv                                                 PCDHA9 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                           7
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                         1
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA              0
                                                  clus
vv                                                 PCDHA9 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                            58
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                           3
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                2
D394V9, continuous
D394V10, continuous
                  vv
clus               R0 R1 RX
  PCDHA9 MUTATED    5  2  1
  PCDHA9 WILD-TYPE 37 22  1
D394V11, multiclass
    clus
vv   PCDHA9 MUTATED PCDHA9 WILD-TYPE
  R0              5               37
  R1              2               22
  RX              1                1
D394V12, continuous

Clustering(395) Variable = GSN MUTATION ANALYSIS
D395V1, survival
               sevent
clus2            0  1
  GSN MUTATED    3  1
  GSN WILD-TYPE 37 28
  GSN MUTATED GSN WILD-TYPE 
            4            65 
  GSN MUTATED GSN WILD-TYPE 
            1            28 
$`GSN MUTATED`
TCGA-FB-A545 TCGA-H8-A6C1 TCGA-HZ-A49H TCGA-IB-7651 
       12.66        13.02         0.95        19.82 

$`GSN WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P5 TCGA-FB-A4P6 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR TCGA-FZ-5920 
        0.13        11.93         2.47         0.03         5.46         2.01 
TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-HZ-7289 TCGA-HZ-7918 
       36.20        20.81        12.89         7.66         7.89         0.92 
TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 
        0.66         0.13         0.26        12.13        11.87         0.26 
TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 
        0.62         0.79         0.69         3.95         0.92         0.53 
TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 
        0.16         2.99         0.76         6.38         1.51        11.41 
TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7652 TCGA-IB-7885 
       49.38         4.77        21.90        15.35        15.65        27.98 
TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 
        4.04         3.62        43.79        15.81        19.66        16.04 
TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP 
        3.85        15.98         0.56        17.16        10.82         9.86 
TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W 
        7.20        15.12         0.26         1.35         4.18         3.62 
TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
        8.12        13.68        16.80        14.14        18.67 

  GSN MUTATED GSN WILD-TYPE 
         0.95          0.03 
  GSN MUTATED GSN WILD-TYPE 
        19.82         49.38 
  GSN MUTATED GSN WILD-TYPE 
        12.84          7.20 
[1] "0.9 - 19.8 (12.8)" "0.0 - 49.4 (7.2)" 
   TCGA-F2-6879    TCGA-F2-6880    TCGA-F2-7273    TCGA-F2-7276    TCGA-F2-A44G 
"GSN WILD-TYPE" "GSN WILD-TYPE" "GSN WILD-TYPE" "GSN WILD-TYPE" "GSN WILD-TYPE" 
   TCGA-F2-A44H    TCGA-FB-A4P5    TCGA-FB-A4P6    TCGA-FB-A545    TCGA-FB-A5VM 
"GSN WILD-TYPE" "GSN WILD-TYPE" "GSN WILD-TYPE"   "GSN MUTATED" "GSN WILD-TYPE" 
   TCGA-FB-A78T    TCGA-FB-A7DR    TCGA-FZ-5920    TCGA-FZ-5922    TCGA-FZ-5923 
"GSN WILD-TYPE" "GSN WILD-TYPE" "GSN WILD-TYPE" "GSN WILD-TYPE" "GSN WILD-TYPE" 
   TCGA-H6-8124    TCGA-H6-A45N    TCGA-H8-A6C1    TCGA-HZ-7289    TCGA-HZ-7918 
"GSN WILD-TYPE" "GSN WILD-TYPE"   "GSN MUTATED" "GSN WILD-TYPE" "GSN WILD-TYPE" 
   TCGA-HZ-7919    TCGA-HZ-7922    TCGA-HZ-7923    TCGA-HZ-7924    TCGA-HZ-7925 
"GSN WILD-TYPE" "GSN WILD-TYPE" "GSN WILD-TYPE" "GSN WILD-TYPE" "GSN WILD-TYPE" 
   TCGA-HZ-7926    TCGA-HZ-8001    TCGA-HZ-8002    TCGA-HZ-8003    TCGA-HZ-8005 
"GSN WILD-TYPE" "GSN WILD-TYPE" "GSN WILD-TYPE" "GSN WILD-TYPE" "GSN WILD-TYPE" 
   TCGA-HZ-8315    TCGA-HZ-8317    TCGA-HZ-8636    TCGA-HZ-8638    TCGA-HZ-A49G 
"GSN WILD-TYPE" "GSN WILD-TYPE" "GSN WILD-TYPE" "GSN WILD-TYPE" "GSN WILD-TYPE" 
   TCGA-HZ-A49H    TCGA-HZ-A4BH    TCGA-HZ-A4BK    TCGA-IB-7644    TCGA-IB-7645 
  "GSN MUTATED" "GSN WILD-TYPE" "GSN WILD-TYPE" "GSN WILD-TYPE" "GSN WILD-TYPE" 
   TCGA-IB-7646    TCGA-IB-7647    TCGA-IB-7649    TCGA-IB-7651    TCGA-IB-7652 
"GSN WILD-TYPE" "GSN WILD-TYPE" "GSN WILD-TYPE"   "GSN MUTATED" "GSN WILD-TYPE" 
   TCGA-IB-7885    TCGA-IB-7886    TCGA-IB-7887    TCGA-IB-7888    TCGA-IB-7889 
"GSN WILD-TYPE" "GSN WILD-TYPE" "GSN WILD-TYPE" "GSN WILD-TYPE" "GSN WILD-TYPE" 
   TCGA-IB-7890    TCGA-IB-7891    TCGA-IB-7893    TCGA-IB-7897    TCGA-IB-8126 
"GSN WILD-TYPE" "GSN WILD-TYPE" "GSN WILD-TYPE" "GSN WILD-TYPE" "GSN WILD-TYPE" 
   TCGA-IB-8127    TCGA-IB-A5SO    TCGA-IB-A5SP    TCGA-IB-A5SQ    TCGA-IB-A5SS 
"GSN WILD-TYPE" "GSN WILD-TYPE" "GSN WILD-TYPE" "GSN WILD-TYPE" "GSN WILD-TYPE" 
   TCGA-IB-A5ST    TCGA-IB-A6UG    TCGA-LB-A7SX    TCGA-OE-A75W    TCGA-PZ-A5RE 
"GSN WILD-TYPE" "GSN WILD-TYPE" "GSN WILD-TYPE" "GSN WILD-TYPE" "GSN WILD-TYPE" 
   TCGA-Q3-A5QY    TCGA-US-A779    TCGA-US-A77E    TCGA-US-A77J 
"GSN WILD-TYPE" "GSN WILD-TYPE" "GSN WILD-TYPE" "GSN WILD-TYPE" 
   TCGA-F2-6879    TCGA-F2-6880    TCGA-F2-7273    TCGA-F2-7276    TCGA-F2-A44G 
"GSN WILD-TYPE" "GSN WILD-TYPE" "GSN WILD-TYPE" "GSN WILD-TYPE" "GSN WILD-TYPE" 
   TCGA-F2-A44H    TCGA-FB-A4P5    TCGA-FB-A4P6    TCGA-FB-A545    TCGA-FB-A5VM 
"GSN WILD-TYPE" "GSN WILD-TYPE" "GSN WILD-TYPE"   "GSN MUTATED" "GSN WILD-TYPE" 
   TCGA-FB-A78T    TCGA-FB-A7DR    TCGA-FZ-5920    TCGA-FZ-5922    TCGA-FZ-5923 
"GSN WILD-TYPE" "GSN WILD-TYPE" "GSN WILD-TYPE" "GSN WILD-TYPE" "GSN WILD-TYPE" 
   TCGA-H6-8124    TCGA-H6-A45N    TCGA-H8-A6C1    TCGA-HZ-7289    TCGA-HZ-7918 
"GSN WILD-TYPE" "GSN WILD-TYPE"   "GSN MUTATED" "GSN WILD-TYPE" "GSN WILD-TYPE" 
   TCGA-HZ-7919    TCGA-HZ-7922    TCGA-HZ-7923    TCGA-HZ-7924    TCGA-HZ-7925 
"GSN WILD-TYPE" "GSN WILD-TYPE" "GSN WILD-TYPE" "GSN WILD-TYPE" "GSN WILD-TYPE" 
   TCGA-HZ-7926    TCGA-HZ-8001    TCGA-HZ-8002    TCGA-HZ-8003    TCGA-HZ-8005 
"GSN WILD-TYPE" "GSN WILD-TYPE" "GSN WILD-TYPE" "GSN WILD-TYPE" "GSN WILD-TYPE" 
   TCGA-HZ-8315    TCGA-HZ-8317    TCGA-HZ-8636    TCGA-HZ-8638    TCGA-HZ-A49G 
"GSN WILD-TYPE" "GSN WILD-TYPE" "GSN WILD-TYPE" "GSN WILD-TYPE" "GSN WILD-TYPE" 
   TCGA-HZ-A49H    TCGA-HZ-A4BH    TCGA-HZ-A4BK    TCGA-IB-7644    TCGA-IB-7645 
  "GSN MUTATED" "GSN WILD-TYPE" "GSN WILD-TYPE" "GSN WILD-TYPE" "GSN WILD-TYPE" 
   TCGA-IB-7646    TCGA-IB-7647    TCGA-IB-7649    TCGA-IB-7651    TCGA-IB-7652 
"GSN WILD-TYPE" "GSN WILD-TYPE" "GSN WILD-TYPE"   "GSN MUTATED" "GSN WILD-TYPE" 
   TCGA-IB-7885    TCGA-IB-7886    TCGA-IB-7887    TCGA-IB-7888    TCGA-IB-7889 
"GSN WILD-TYPE" "GSN WILD-TYPE" "GSN WILD-TYPE" "GSN WILD-TYPE" "GSN WILD-TYPE" 
   TCGA-IB-7890    TCGA-IB-7891    TCGA-IB-7893    TCGA-IB-7897    TCGA-IB-8126 
"GSN WILD-TYPE" "GSN WILD-TYPE" "GSN WILD-TYPE" "GSN WILD-TYPE" "GSN WILD-TYPE" 
   TCGA-IB-8127    TCGA-IB-A5SO    TCGA-IB-A5SP    TCGA-IB-A5SQ    TCGA-IB-A5SS 
"GSN WILD-TYPE" "GSN WILD-TYPE" "GSN WILD-TYPE" "GSN WILD-TYPE" "GSN WILD-TYPE" 
   TCGA-IB-A5ST    TCGA-IB-A6UG    TCGA-LB-A7SX    TCGA-OE-A75W    TCGA-PZ-A5RE 
"GSN WILD-TYPE" "GSN WILD-TYPE" "GSN WILD-TYPE" "GSN WILD-TYPE" "GSN WILD-TYPE" 
   TCGA-Q3-A5QY    TCGA-US-A779    TCGA-US-A77E    TCGA-US-A77J 
"GSN WILD-TYPE" "GSN WILD-TYPE" "GSN WILD-TYPE" "GSN WILD-TYPE" 
   TCGA-F2-6879    TCGA-F2-6880    TCGA-F2-7273    TCGA-F2-7276    TCGA-F2-A44G 
"GSN WILD-TYPE" "GSN WILD-TYPE" "GSN WILD-TYPE" "GSN WILD-TYPE" "GSN WILD-TYPE" 
   TCGA-F2-A44H    TCGA-FB-A4P5    TCGA-FB-A4P6    TCGA-FB-A545    TCGA-FB-A5VM 
"GSN WILD-TYPE" "GSN WILD-TYPE" "GSN WILD-TYPE"   "GSN MUTATED" "GSN WILD-TYPE" 
   TCGA-FB-A78T    TCGA-FB-A7DR    TCGA-FZ-5920    TCGA-FZ-5922    TCGA-FZ-5923 
"GSN WILD-TYPE" "GSN WILD-TYPE" "GSN WILD-TYPE" "GSN WILD-TYPE" "GSN WILD-TYPE" 
   TCGA-H6-8124    TCGA-H6-A45N    TCGA-H8-A6C1    TCGA-HZ-7289    TCGA-HZ-7918 
"GSN WILD-TYPE" "GSN WILD-TYPE"   "GSN MUTATED" "GSN WILD-TYPE" "GSN WILD-TYPE" 
   TCGA-HZ-7919    TCGA-HZ-7922    TCGA-HZ-7923    TCGA-HZ-7924    TCGA-HZ-7925 
"GSN WILD-TYPE" "GSN WILD-TYPE" "GSN WILD-TYPE" "GSN WILD-TYPE" "GSN WILD-TYPE" 
   TCGA-HZ-7926    TCGA-HZ-8001    TCGA-HZ-8002    TCGA-HZ-8003    TCGA-HZ-8005 
"GSN WILD-TYPE" "GSN WILD-TYPE" "GSN WILD-TYPE" "GSN WILD-TYPE" "GSN WILD-TYPE" 
   TCGA-HZ-8315    TCGA-HZ-8317    TCGA-HZ-8636    TCGA-HZ-8638    TCGA-HZ-A49G 
"GSN WILD-TYPE" "GSN WILD-TYPE" "GSN WILD-TYPE" "GSN WILD-TYPE" "GSN WILD-TYPE" 
   TCGA-HZ-A49H    TCGA-HZ-A4BH    TCGA-HZ-A4BK    TCGA-IB-7644    TCGA-IB-7645 
  "GSN MUTATED" "GSN WILD-TYPE" "GSN WILD-TYPE" "GSN WILD-TYPE" "GSN WILD-TYPE" 
   TCGA-IB-7646    TCGA-IB-7647    TCGA-IB-7649    TCGA-IB-7651    TCGA-IB-7652 
"GSN WILD-TYPE" "GSN WILD-TYPE" "GSN WILD-TYPE"   "GSN MUTATED" "GSN WILD-TYPE" 
   TCGA-IB-7885    TCGA-IB-7886    TCGA-IB-7887    TCGA-IB-7888    TCGA-IB-7889 
"GSN WILD-TYPE" "GSN WILD-TYPE" "GSN WILD-TYPE" "GSN WILD-TYPE" "GSN WILD-TYPE" 
   TCGA-IB-7890    TCGA-IB-7891    TCGA-IB-7893    TCGA-IB-7897    TCGA-IB-8126 
"GSN WILD-TYPE" "GSN WILD-TYPE" "GSN WILD-TYPE" "GSN WILD-TYPE" "GSN WILD-TYPE" 
   TCGA-IB-8127    TCGA-IB-A5SO    TCGA-IB-A5SP    TCGA-IB-A5SQ    TCGA-IB-A5SS 
"GSN WILD-TYPE" "GSN WILD-TYPE" "GSN WILD-TYPE" "GSN WILD-TYPE" "GSN WILD-TYPE" 
   TCGA-IB-A5ST    TCGA-IB-A6UG    TCGA-LB-A7SX    TCGA-OE-A75W    TCGA-PZ-A5RE 
"GSN WILD-TYPE" "GSN WILD-TYPE" "GSN WILD-TYPE" "GSN WILD-TYPE" "GSN WILD-TYPE" 
   TCGA-Q3-A5QY    TCGA-US-A779    TCGA-US-A77E    TCGA-US-A77J 
"GSN WILD-TYPE" "GSN WILD-TYPE" "GSN WILD-TYPE" "GSN WILD-TYPE" 
[1] "hr=" "2"  
D395V2, continuous
               vv
clus            STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  GSN MUTATED          0        0         1         3         0        0
  GSN WILD-TYPE        1        4        10        48         2        3
D395V3, multiclass
               vv
clus            T1+T2 T3+T4
  GSN MUTATED       0     4
  GSN WILD-TYPE     6    62
D395V4, multiclass
       clus
vv      GSN MUTATED GSN WILD-TYPE
  T1+T2           0             6
  T3+T4           4            62
D395V5, binary
               cls
clus             0  1
  GSN MUTATED    1  3
  GSN WILD-TYPE 16 51
[1] "tbl2"
               cls
clus            [,1] [,2]
  GSN MUTATED      1    3
  GSN WILD-TYPE   16   51
   clus
vv  GSN MUTATED GSN WILD-TYPE
  0           1            16
  1           3            51
               vv
clus            M0 M1 MX
  GSN MUTATED    2  0  2
  GSN WILD-TYPE 37  3 28
D395V6, multiclass
    clus
vv   GSN MUTATED GSN WILD-TYPE
  M0           2            37
  M1           0             3
  MX           2            28
D395V7, binary
               cls
clus             0  1
  GSN MUTATED    3  1
  GSN WILD-TYPE 33 35
[1] "tbl2"
               cls
clus            [,1] [,2]
  GSN MUTATED      3    1
  GSN WILD-TYPE   33   35
        clus
vv       GSN MUTATED GSN WILD-TYPE
  FEMALE           3            33
  MALE             1            35
               vv
clus            PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  GSN MUTATED                                     3
  GSN WILD-TYPE                                  62
               vv
clus            PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  GSN MUTATED                                       1
  GSN WILD-TYPE                                     3
               vv
clus            PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  GSN MUTATED                                                  0
  GSN WILD-TYPE                                                2
D395V8, multiclass
                                                  clus
vv                                                 GSN MUTATED GSN WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                        3            62
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                      1             3
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA           0             2
D395V9, continuous
[1] "Remove cluster labels:" "GSN MUTATED"           
clus
  GSN MUTATED GSN WILD-TYPE 
            2            20 
   TCGA-F2-6880    TCGA-FB-A4P5    TCGA-FB-A4P6    TCGA-FB-A5VM    TCGA-FB-A78T 
"GSN WILD-TYPE" "GSN WILD-TYPE" "GSN WILD-TYPE" "GSN WILD-TYPE" "GSN WILD-TYPE" 
   TCGA-FB-A7DR    TCGA-H6-8124    TCGA-H6-A45N    TCGA-IB-7644    TCGA-IB-7649 
"GSN WILD-TYPE" "GSN WILD-TYPE" "GSN WILD-TYPE" "GSN WILD-TYPE" "GSN WILD-TYPE" 
   TCGA-IB-7885    TCGA-IB-7886    TCGA-IB-7887    TCGA-IB-7891    TCGA-IB-8126 
"GSN WILD-TYPE" "GSN WILD-TYPE" "GSN WILD-TYPE" "GSN WILD-TYPE" "GSN WILD-TYPE" 
   TCGA-IB-8127    TCGA-IB-A5SS    TCGA-IB-A6UG    TCGA-LB-A7SX    TCGA-OE-A75W 
"GSN WILD-TYPE" "GSN WILD-TYPE" "GSN WILD-TYPE" "GSN WILD-TYPE" "GSN WILD-TYPE" 
D395V10, continuous
[1] "Remove cluster labels:" "GSN MUTATED"           
clus
  GSN MUTATED GSN WILD-TYPE 
            2            17 
   TCGA-FB-A4P5    TCGA-FB-A4P6    TCGA-FB-A5VM    TCGA-FB-A78T    TCGA-FB-A7DR 
"GSN WILD-TYPE" "GSN WILD-TYPE" "GSN WILD-TYPE" "GSN WILD-TYPE" "GSN WILD-TYPE" 
   TCGA-H6-8124    TCGA-IB-7644    TCGA-IB-7649    TCGA-IB-7885    TCGA-IB-7886 
"GSN WILD-TYPE" "GSN WILD-TYPE" "GSN WILD-TYPE" "GSN WILD-TYPE" "GSN WILD-TYPE" 
   TCGA-IB-7891    TCGA-IB-8126    TCGA-IB-8127    TCGA-IB-A5SS    TCGA-IB-A6UG 
"GSN WILD-TYPE" "GSN WILD-TYPE" "GSN WILD-TYPE" "GSN WILD-TYPE" "GSN WILD-TYPE" 
   TCGA-LB-A7SX    TCGA-OE-A75W 
"GSN WILD-TYPE" "GSN WILD-TYPE" 
               vv
clus            R0 R1 RX
  GSN MUTATED    3  0  0
  GSN WILD-TYPE 39 24  2
D395V11, multiclass
    clus
vv   GSN MUTATED GSN WILD-TYPE
  R0           3            39
  R1           0            24
  RX           0             2
D395V12, continuous

Clustering(396) Variable = AEBP1 MUTATION ANALYSIS
D396V1, survival
                 sevent
clus2              0  1
  AEBP1 MUTATED    3  2
  AEBP1 WILD-TYPE 37 27
  AEBP1 MUTATED AEBP1 WILD-TYPE 
              5              64 
  AEBP1 MUTATED AEBP1 WILD-TYPE 
              2              27 
$`AEBP1 MUTATED`
TCGA-HZ-8001 TCGA-HZ-8005 TCGA-HZ-8317 TCGA-IB-7651 TCGA-IB-A5ST 
        0.62         3.95         0.53        19.82         0.26 

$`AEBP1 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P5 TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR 
        0.13        11.93        12.66         2.47         0.03         5.46 
TCGA-FZ-5920 TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 
        2.01        36.20        20.81        12.89         7.66        13.02 
TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 
        7.89         0.92         0.66         0.13         0.26        12.13 
TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8315 TCGA-HZ-8636 
       11.87         0.26         0.79         0.69         0.92         0.16 
TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 
        2.99         0.76         0.95         6.38         1.51        11.41 
TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7652 TCGA-IB-7885 
       49.38         4.77        21.90        15.35        15.65        27.98 
TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 
        4.04         3.62        43.79        15.81        19.66        16.04 
TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP 
        3.85        15.98         0.56        17.16        10.82         9.86 
TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W TCGA-PZ-A5RE 
        7.20        15.12         1.35         4.18         3.62         8.12 
TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
       13.68        16.80        14.14        18.67 

  AEBP1 MUTATED AEBP1 WILD-TYPE 
           0.26            0.03 
  AEBP1 MUTATED AEBP1 WILD-TYPE 
          19.82           49.38 
  AEBP1 MUTATED AEBP1 WILD-TYPE 
          0.620           8.005 
[1] "0.3 - 19.8 (0.6)" "0.0 - 49.4 (8.0)"
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"AEBP1 WILD-TYPE" "AEBP1 WILD-TYPE" "AEBP1 WILD-TYPE" "AEBP1 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"AEBP1 WILD-TYPE" "AEBP1 WILD-TYPE" "AEBP1 WILD-TYPE" "AEBP1 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"AEBP1 WILD-TYPE" "AEBP1 WILD-TYPE" "AEBP1 WILD-TYPE" "AEBP1 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"AEBP1 WILD-TYPE" "AEBP1 WILD-TYPE" "AEBP1 WILD-TYPE" "AEBP1 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"AEBP1 WILD-TYPE" "AEBP1 WILD-TYPE" "AEBP1 WILD-TYPE" "AEBP1 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"AEBP1 WILD-TYPE" "AEBP1 WILD-TYPE" "AEBP1 WILD-TYPE" "AEBP1 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"AEBP1 WILD-TYPE" "AEBP1 WILD-TYPE"   "AEBP1 MUTATED" "AEBP1 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"AEBP1 WILD-TYPE"   "AEBP1 MUTATED" "AEBP1 WILD-TYPE"   "AEBP1 MUTATED" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"AEBP1 WILD-TYPE" "AEBP1 WILD-TYPE" "AEBP1 WILD-TYPE" "AEBP1 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"AEBP1 WILD-TYPE" "AEBP1 WILD-TYPE" "AEBP1 WILD-TYPE" "AEBP1 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"AEBP1 WILD-TYPE" "AEBP1 WILD-TYPE" "AEBP1 WILD-TYPE"   "AEBP1 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"AEBP1 WILD-TYPE" "AEBP1 WILD-TYPE" "AEBP1 WILD-TYPE" "AEBP1 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"AEBP1 WILD-TYPE" "AEBP1 WILD-TYPE" "AEBP1 WILD-TYPE" "AEBP1 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"AEBP1 WILD-TYPE" "AEBP1 WILD-TYPE" "AEBP1 WILD-TYPE" "AEBP1 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"AEBP1 WILD-TYPE" "AEBP1 WILD-TYPE" "AEBP1 WILD-TYPE" "AEBP1 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
  "AEBP1 MUTATED" "AEBP1 WILD-TYPE" "AEBP1 WILD-TYPE" "AEBP1 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"AEBP1 WILD-TYPE" "AEBP1 WILD-TYPE" "AEBP1 WILD-TYPE" "AEBP1 WILD-TYPE" 
     TCGA-US-A77J 
"AEBP1 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"AEBP1 WILD-TYPE" "AEBP1 WILD-TYPE" "AEBP1 WILD-TYPE" "AEBP1 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"AEBP1 WILD-TYPE" "AEBP1 WILD-TYPE" "AEBP1 WILD-TYPE" "AEBP1 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"AEBP1 WILD-TYPE" "AEBP1 WILD-TYPE" "AEBP1 WILD-TYPE" "AEBP1 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"AEBP1 WILD-TYPE" "AEBP1 WILD-TYPE" "AEBP1 WILD-TYPE" "AEBP1 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"AEBP1 WILD-TYPE" "AEBP1 WILD-TYPE" "AEBP1 WILD-TYPE" "AEBP1 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"AEBP1 WILD-TYPE" "AEBP1 WILD-TYPE" "AEBP1 WILD-TYPE" "AEBP1 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"AEBP1 WILD-TYPE" "AEBP1 WILD-TYPE"   "AEBP1 MUTATED" "AEBP1 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"AEBP1 WILD-TYPE"   "AEBP1 MUTATED" "AEBP1 WILD-TYPE"   "AEBP1 MUTATED" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"AEBP1 WILD-TYPE" "AEBP1 WILD-TYPE" "AEBP1 WILD-TYPE" "AEBP1 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"AEBP1 WILD-TYPE" "AEBP1 WILD-TYPE" "AEBP1 WILD-TYPE" "AEBP1 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"AEBP1 WILD-TYPE" "AEBP1 WILD-TYPE" "AEBP1 WILD-TYPE"   "AEBP1 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"AEBP1 WILD-TYPE" "AEBP1 WILD-TYPE" "AEBP1 WILD-TYPE" "AEBP1 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"AEBP1 WILD-TYPE" "AEBP1 WILD-TYPE" "AEBP1 WILD-TYPE" "AEBP1 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"AEBP1 WILD-TYPE" "AEBP1 WILD-TYPE" "AEBP1 WILD-TYPE" "AEBP1 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"AEBP1 WILD-TYPE" "AEBP1 WILD-TYPE" "AEBP1 WILD-TYPE" "AEBP1 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
  "AEBP1 MUTATED" "AEBP1 WILD-TYPE" "AEBP1 WILD-TYPE" "AEBP1 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"AEBP1 WILD-TYPE" "AEBP1 WILD-TYPE" "AEBP1 WILD-TYPE" "AEBP1 WILD-TYPE" 
     TCGA-US-A77J 
"AEBP1 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"AEBP1 WILD-TYPE" "AEBP1 WILD-TYPE" "AEBP1 WILD-TYPE" "AEBP1 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"AEBP1 WILD-TYPE" "AEBP1 WILD-TYPE" "AEBP1 WILD-TYPE" "AEBP1 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"AEBP1 WILD-TYPE" "AEBP1 WILD-TYPE" "AEBP1 WILD-TYPE" "AEBP1 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"AEBP1 WILD-TYPE" "AEBP1 WILD-TYPE" "AEBP1 WILD-TYPE" "AEBP1 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"AEBP1 WILD-TYPE" "AEBP1 WILD-TYPE" "AEBP1 WILD-TYPE" "AEBP1 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"AEBP1 WILD-TYPE" "AEBP1 WILD-TYPE" "AEBP1 WILD-TYPE" "AEBP1 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"AEBP1 WILD-TYPE" "AEBP1 WILD-TYPE"   "AEBP1 MUTATED" "AEBP1 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"AEBP1 WILD-TYPE"   "AEBP1 MUTATED" "AEBP1 WILD-TYPE"   "AEBP1 MUTATED" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"AEBP1 WILD-TYPE" "AEBP1 WILD-TYPE" "AEBP1 WILD-TYPE" "AEBP1 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"AEBP1 WILD-TYPE" "AEBP1 WILD-TYPE" "AEBP1 WILD-TYPE" "AEBP1 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"AEBP1 WILD-TYPE" "AEBP1 WILD-TYPE" "AEBP1 WILD-TYPE"   "AEBP1 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"AEBP1 WILD-TYPE" "AEBP1 WILD-TYPE" "AEBP1 WILD-TYPE" "AEBP1 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"AEBP1 WILD-TYPE" "AEBP1 WILD-TYPE" "AEBP1 WILD-TYPE" "AEBP1 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"AEBP1 WILD-TYPE" "AEBP1 WILD-TYPE" "AEBP1 WILD-TYPE" "AEBP1 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"AEBP1 WILD-TYPE" "AEBP1 WILD-TYPE" "AEBP1 WILD-TYPE" "AEBP1 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
  "AEBP1 MUTATED" "AEBP1 WILD-TYPE" "AEBP1 WILD-TYPE" "AEBP1 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"AEBP1 WILD-TYPE" "AEBP1 WILD-TYPE" "AEBP1 WILD-TYPE" "AEBP1 WILD-TYPE" 
     TCGA-US-A77J 
"AEBP1 WILD-TYPE" 
[1] "hr=" "1.6"
D396V2, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  AEBP1 MUTATED          0        0         0         4         1        0
  AEBP1 WILD-TYPE        1        4        11        47         1        3
D396V3, multiclass
                 vv
clus              T1+T2 T3+T4
  AEBP1 MUTATED       0     5
  AEBP1 WILD-TYPE     6    61
D396V4, multiclass
       clus
vv      AEBP1 MUTATED AEBP1 WILD-TYPE
  T1+T2             0               6
  T3+T4             5              61
D396V5, binary
                 cls
clus               0  1
  AEBP1 MUTATED    1  4
  AEBP1 WILD-TYPE 16 50
[1] "tbl2"
                 cls
clus              [,1] [,2]
  AEBP1 MUTATED      1    4
  AEBP1 WILD-TYPE   16   50
   clus
vv  AEBP1 MUTATED AEBP1 WILD-TYPE
  0             1              16
  1             4              50
                 vv
clus              M0 M1 MX
  AEBP1 MUTATED    2  0  3
  AEBP1 WILD-TYPE 37  3 27
D396V6, multiclass
    clus
vv   AEBP1 MUTATED AEBP1 WILD-TYPE
  M0             2              37
  M1             0               3
  MX             3              27
D396V7, binary
                 cls
clus               0  1
  AEBP1 MUTATED    3  2
  AEBP1 WILD-TYPE 33 34
[1] "tbl2"
                 cls
clus              [,1] [,2]
  AEBP1 MUTATED      3    2
  AEBP1 WILD-TYPE   33   34
        clus
vv       AEBP1 MUTATED AEBP1 WILD-TYPE
  FEMALE             3              33
  MALE               2              34
                 vv
clus              PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  AEBP1 MUTATED                                     5
  AEBP1 WILD-TYPE                                  60
                 vv
clus              PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  AEBP1 MUTATED                                       0
  AEBP1 WILD-TYPE                                     4
                 vv
clus              PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  AEBP1 MUTATED                                                  0
  AEBP1 WILD-TYPE                                                2
D396V8, multiclass
                                                  clus
vv                                                 AEBP1 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                          5
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                        0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA             0
                                                  clus
vv                                                 AEBP1 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                           60
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                          4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA               2
D396V9, continuous
[1] "Remove cluster labels:" "AEBP1 MUTATED"         
clus
  AEBP1 MUTATED AEBP1 WILD-TYPE 
              1              21 
     TCGA-F2-6880      TCGA-FB-A4P5      TCGA-FB-A4P6      TCGA-FB-A5VM 
"AEBP1 WILD-TYPE" "AEBP1 WILD-TYPE" "AEBP1 WILD-TYPE" "AEBP1 WILD-TYPE" 
     TCGA-FB-A78T      TCGA-FB-A7DR      TCGA-H6-8124      TCGA-H6-A45N 
"AEBP1 WILD-TYPE" "AEBP1 WILD-TYPE" "AEBP1 WILD-TYPE" "AEBP1 WILD-TYPE" 
     TCGA-H8-A6C1      TCGA-IB-7644      TCGA-IB-7649      TCGA-IB-7885 
"AEBP1 WILD-TYPE" "AEBP1 WILD-TYPE" "AEBP1 WILD-TYPE" "AEBP1 WILD-TYPE" 
     TCGA-IB-7886      TCGA-IB-7887      TCGA-IB-7891      TCGA-IB-8126 
"AEBP1 WILD-TYPE" "AEBP1 WILD-TYPE" "AEBP1 WILD-TYPE" "AEBP1 WILD-TYPE" 
     TCGA-IB-8127      TCGA-IB-A5SS      TCGA-IB-A6UG      TCGA-LB-A7SX 
"AEBP1 WILD-TYPE" "AEBP1 WILD-TYPE" "AEBP1 WILD-TYPE" "AEBP1 WILD-TYPE" 
     TCGA-OE-A75W 
"AEBP1 WILD-TYPE" 
D396V10, continuous
[1] "Remove cluster labels:" "AEBP1 MUTATED"         
clus
  AEBP1 MUTATED AEBP1 WILD-TYPE 
              1              18 
     TCGA-FB-A4P5      TCGA-FB-A4P6      TCGA-FB-A5VM      TCGA-FB-A78T 
"AEBP1 WILD-TYPE" "AEBP1 WILD-TYPE" "AEBP1 WILD-TYPE" "AEBP1 WILD-TYPE" 
     TCGA-FB-A7DR      TCGA-H6-8124      TCGA-H8-A6C1      TCGA-IB-7644 
"AEBP1 WILD-TYPE" "AEBP1 WILD-TYPE" "AEBP1 WILD-TYPE" "AEBP1 WILD-TYPE" 
     TCGA-IB-7649      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7891 
"AEBP1 WILD-TYPE" "AEBP1 WILD-TYPE" "AEBP1 WILD-TYPE" "AEBP1 WILD-TYPE" 
     TCGA-IB-8126      TCGA-IB-8127      TCGA-IB-A5SS      TCGA-IB-A6UG 
"AEBP1 WILD-TYPE" "AEBP1 WILD-TYPE" "AEBP1 WILD-TYPE" "AEBP1 WILD-TYPE" 
     TCGA-LB-A7SX      TCGA-OE-A75W 
"AEBP1 WILD-TYPE" "AEBP1 WILD-TYPE" 
                 vv
clus              R0 R1 RX
  AEBP1 MUTATED    3  2  0
  AEBP1 WILD-TYPE 39 22  2
D396V11, multiclass
    clus
vv   AEBP1 MUTATED AEBP1 WILD-TYPE
  R0             3              39
  R1             2              22
  RX             0               2
D396V12, continuous

Clustering(397) Variable = UNC50 MUTATION ANALYSIS
D397V1, survival
                 sevent
clus2              0  1
  UNC50 MUTATED    2  1
  UNC50 WILD-TYPE 38 28
  UNC50 MUTATED UNC50 WILD-TYPE 
              3              66 
  UNC50 MUTATED UNC50 WILD-TYPE 
              1              28 
$`UNC50 MUTATED`
TCGA-FB-A545 TCGA-IB-7651 TCGA-IB-8127 
       12.66        19.82        17.16 

$`UNC50 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P5 TCGA-FB-A4P6 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR TCGA-FZ-5920 
        0.13        11.93         2.47         0.03         5.46         2.01 
TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7289 
       36.20        20.81        12.89         7.66        13.02         7.89 
TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 
        0.92         0.66         0.13         0.26        12.13        11.87 
TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 
        0.26         0.62         0.79         0.69         3.95         0.92 
TCGA-HZ-8317 TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH 
        0.53         0.16         2.99         0.76         0.95         6.38 
TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 
        1.51        11.41        49.38         4.77        21.90        15.35 
TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 
       15.65        27.98         4.04         3.62        43.79        15.81 
TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-A5SO 
       19.66        16.04         3.85        15.98         0.56        10.82 
TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX 
        9.86         7.20        15.12         0.26         1.35         4.18 
TCGA-OE-A75W TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
        3.62         8.12        13.68        16.80        14.14        18.67 

  UNC50 MUTATED UNC50 WILD-TYPE 
          12.66            0.03 
  UNC50 MUTATED UNC50 WILD-TYPE 
          19.82           49.38 
  UNC50 MUTATED UNC50 WILD-TYPE 
          17.16            7.15 
[1] "12.7 - 19.8 (17.2)" "0.0 - 49.4 (7.2)"  
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
  "UNC50 MUTATED" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE"   "UNC50 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE"   "UNC50 MUTATED" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-US-A77J 
"UNC50 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
  "UNC50 MUTATED" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE"   "UNC50 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE"   "UNC50 MUTATED" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-US-A77J 
"UNC50 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
  "UNC50 MUTATED" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE"   "UNC50 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE"   "UNC50 MUTATED" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-US-A77J 
"UNC50 WILD-TYPE" 
[1] "hr=" "2.4"
D397V2, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  UNC50 MUTATED          0        0         0         3         0        0
  UNC50 WILD-TYPE        1        4        11        48         2        3
D397V3, multiclass
                 vv
clus              T1+T2 T3+T4
  UNC50 MUTATED       0     3
  UNC50 WILD-TYPE     6    63
D397V4, multiclass
       clus
vv      UNC50 MUTATED UNC50 WILD-TYPE
  T1+T2             0               6
  T3+T4             3              63
D397V5, binary
                 cls
clus               0  1
  UNC50 MUTATED    0  3
  UNC50 WILD-TYPE 17 51
[1] "tbl2"
                 cls
clus              [,1] [,2]
  UNC50 MUTATED      0    3
  UNC50 WILD-TYPE   17   51
   clus
vv  UNC50 MUTATED UNC50 WILD-TYPE
  0             0              17
  1             3              51
                 vv
clus              M0 M1 MX
  UNC50 MUTATED    3  0  0
  UNC50 WILD-TYPE 36  3 30
D397V6, multiclass
    clus
vv   UNC50 MUTATED UNC50 WILD-TYPE
  M0             3              36
  M1             0               3
  MX             0              30
D397V7, binary
                 cls
clus               0  1
  UNC50 MUTATED    2  1
  UNC50 WILD-TYPE 34 35
[1] "tbl2"
                 cls
clus              [,1] [,2]
  UNC50 MUTATED      2    1
  UNC50 WILD-TYPE   34   35
        clus
vv       UNC50 MUTATED UNC50 WILD-TYPE
  FEMALE             2              34
  MALE               1              35
                 vv
clus              PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  UNC50 MUTATED                                     3
  UNC50 WILD-TYPE                                  62
                 vv
clus              PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  UNC50 MUTATED                                       0
  UNC50 WILD-TYPE                                     4
                 vv
clus              PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  UNC50 MUTATED                                                  0
  UNC50 WILD-TYPE                                                2
D397V8, multiclass
                                                  clus
vv                                                 UNC50 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                          3
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                        0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA             0
                                                  clus
vv                                                 UNC50 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                           62
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                          4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA               2
D397V9, continuous
[1] "Remove cluster labels:" "UNC50 MUTATED"         
clus
  UNC50 MUTATED UNC50 WILD-TYPE 
              2              20 
     TCGA-F2-6880      TCGA-FB-A4P5      TCGA-FB-A4P6      TCGA-FB-A5VM 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-FB-A78T      TCGA-FB-A7DR      TCGA-H6-8124      TCGA-H6-A45N 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-H8-A6C1      TCGA-IB-7644      TCGA-IB-7649      TCGA-IB-7885 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-IB-7886      TCGA-IB-7887      TCGA-IB-7891      TCGA-IB-8126 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-IB-A5SS      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
D397V10, continuous
[1] "Remove cluster labels:" "UNC50 MUTATED"         
clus
  UNC50 MUTATED UNC50 WILD-TYPE 
              2              17 
     TCGA-FB-A4P5      TCGA-FB-A4P6      TCGA-FB-A5VM      TCGA-FB-A78T 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-FB-A7DR      TCGA-H6-8124      TCGA-H8-A6C1      TCGA-IB-7644 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-IB-7649      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7891 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-IB-8126      TCGA-IB-A5SS      TCGA-IB-A6UG      TCGA-LB-A7SX 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-OE-A75W 
"UNC50 WILD-TYPE" 
                 vv
clus              R0 R1 RX
  UNC50 MUTATED    1  1  0
  UNC50 WILD-TYPE 41 23  2
D397V11, multiclass
[1] "Remove cluster labels:" "UNC50 MUTATED"         
clus
  UNC50 MUTATED UNC50 WILD-TYPE 
              2              66 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A5VM 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-FB-A78T      TCGA-FB-A7DR      TCGA-FZ-5920      TCGA-FZ-5922 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-FZ-5923      TCGA-H6-8124      TCGA-H8-A6C1      TCGA-HZ-7289 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-HZ-7918      TCGA-HZ-7919      TCGA-HZ-7920      TCGA-HZ-7922 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-HZ-7923      TCGA-HZ-7924      TCGA-HZ-7925      TCGA-HZ-7926 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-HZ-8001      TCGA-HZ-8002      TCGA-HZ-8003      TCGA-HZ-8005 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-HZ-8315      TCGA-HZ-8317      TCGA-HZ-8636      TCGA-HZ-8637 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H      TCGA-HZ-A49I 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7652 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887      TCGA-IB-7888 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891      TCGA-IB-7893 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-A5SO      TCGA-IB-A5SP 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-IB-A5SQ      TCGA-IB-A5SS      TCGA-IB-A5ST      TCGA-IB-A6UG 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-LB-A7SX      TCGA-OE-A75W      TCGA-Q3-A5QY      TCGA-US-A779 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-US-A77E      TCGA-US-A77J 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
D397V12, continuous

Clustering(398) Variable = CPXM2 MUTATION ANALYSIS
D398V1, survival
                 sevent
clus2              0  1
  CPXM2 MUTATED    3  1
  CPXM2 WILD-TYPE 37 28
  CPXM2 MUTATED CPXM2 WILD-TYPE 
              4              65 
  CPXM2 MUTATED CPXM2 WILD-TYPE 
              1              28 
$`CPXM2 MUTATED`
TCGA-F2-A44G TCGA-F2-A44H TCGA-HZ-8636 TCGA-IB-A5SP 
        5.03        19.27         0.16         9.86 

$`CPXM2 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-FB-A4P5 TCGA-FB-A4P6 
       10.98         9.70        11.84         7.10         0.13        11.93 
TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR TCGA-FZ-5920 TCGA-FZ-5922 
       12.66         2.47         0.03         5.46         2.01        36.20 
TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7289 TCGA-HZ-7918 
       20.81        12.89         7.66        13.02         7.89         0.92 
TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 
        0.66         0.13         0.26        12.13        11.87         0.26 
TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 
        0.62         0.79         0.69         3.95         0.92         0.53 
TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 
        2.99         0.76         0.95         6.38         1.51        11.41 
TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7651 TCGA-IB-7652 
       49.38         4.77        21.90        15.35        19.82        15.65 
TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 
       27.98         4.04         3.62        43.79        15.81        19.66 
TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO 
       16.04         3.85        15.98         0.56        17.16        10.82 
TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W 
        7.20        15.12         0.26         1.35         4.18         3.62 
TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
        8.12        13.68        16.80        14.14        18.67 

  CPXM2 MUTATED CPXM2 WILD-TYPE 
           0.16            0.03 
  CPXM2 MUTATED CPXM2 WILD-TYPE 
          19.27           49.38 
  CPXM2 MUTATED CPXM2 WILD-TYPE 
          7.445           7.660 
[1] "0.2 - 19.3 (7.4)" "0.0 - 49.4 (7.7)"
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"CPXM2 WILD-TYPE" "CPXM2 WILD-TYPE" "CPXM2 WILD-TYPE" "CPXM2 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
  "CPXM2 MUTATED"   "CPXM2 MUTATED" "CPXM2 WILD-TYPE" "CPXM2 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"CPXM2 WILD-TYPE" "CPXM2 WILD-TYPE" "CPXM2 WILD-TYPE" "CPXM2 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"CPXM2 WILD-TYPE" "CPXM2 WILD-TYPE" "CPXM2 WILD-TYPE" "CPXM2 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"CPXM2 WILD-TYPE" "CPXM2 WILD-TYPE" "CPXM2 WILD-TYPE" "CPXM2 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"CPXM2 WILD-TYPE" "CPXM2 WILD-TYPE" "CPXM2 WILD-TYPE" "CPXM2 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"CPXM2 WILD-TYPE" "CPXM2 WILD-TYPE" "CPXM2 WILD-TYPE" "CPXM2 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"CPXM2 WILD-TYPE" "CPXM2 WILD-TYPE" "CPXM2 WILD-TYPE" "CPXM2 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
  "CPXM2 MUTATED" "CPXM2 WILD-TYPE" "CPXM2 WILD-TYPE" "CPXM2 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"CPXM2 WILD-TYPE" "CPXM2 WILD-TYPE" "CPXM2 WILD-TYPE" "CPXM2 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"CPXM2 WILD-TYPE" "CPXM2 WILD-TYPE" "CPXM2 WILD-TYPE" "CPXM2 WILD-TYPE" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"CPXM2 WILD-TYPE" "CPXM2 WILD-TYPE" "CPXM2 WILD-TYPE" "CPXM2 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"CPXM2 WILD-TYPE" "CPXM2 WILD-TYPE" "CPXM2 WILD-TYPE" "CPXM2 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"CPXM2 WILD-TYPE" "CPXM2 WILD-TYPE" "CPXM2 WILD-TYPE" "CPXM2 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"CPXM2 WILD-TYPE"   "CPXM2 MUTATED" "CPXM2 WILD-TYPE" "CPXM2 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"CPXM2 WILD-TYPE" "CPXM2 WILD-TYPE" "CPXM2 WILD-TYPE" "CPXM2 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"CPXM2 WILD-TYPE" "CPXM2 WILD-TYPE" "CPXM2 WILD-TYPE" "CPXM2 WILD-TYPE" 
     TCGA-US-A77J 
"CPXM2 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"CPXM2 WILD-TYPE" "CPXM2 WILD-TYPE" "CPXM2 WILD-TYPE" "CPXM2 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
  "CPXM2 MUTATED"   "CPXM2 MUTATED" "CPXM2 WILD-TYPE" "CPXM2 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"CPXM2 WILD-TYPE" "CPXM2 WILD-TYPE" "CPXM2 WILD-TYPE" "CPXM2 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"CPXM2 WILD-TYPE" "CPXM2 WILD-TYPE" "CPXM2 WILD-TYPE" "CPXM2 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"CPXM2 WILD-TYPE" "CPXM2 WILD-TYPE" "CPXM2 WILD-TYPE" "CPXM2 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"CPXM2 WILD-TYPE" "CPXM2 WILD-TYPE" "CPXM2 WILD-TYPE" "CPXM2 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"CPXM2 WILD-TYPE" "CPXM2 WILD-TYPE" "CPXM2 WILD-TYPE" "CPXM2 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"CPXM2 WILD-TYPE" "CPXM2 WILD-TYPE" "CPXM2 WILD-TYPE" "CPXM2 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
  "CPXM2 MUTATED" "CPXM2 WILD-TYPE" "CPXM2 WILD-TYPE" "CPXM2 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"CPXM2 WILD-TYPE" "CPXM2 WILD-TYPE" "CPXM2 WILD-TYPE" "CPXM2 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"CPXM2 WILD-TYPE" "CPXM2 WILD-TYPE" "CPXM2 WILD-TYPE" "CPXM2 WILD-TYPE" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"CPXM2 WILD-TYPE" "CPXM2 WILD-TYPE" "CPXM2 WILD-TYPE" "CPXM2 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"CPXM2 WILD-TYPE" "CPXM2 WILD-TYPE" "CPXM2 WILD-TYPE" "CPXM2 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"CPXM2 WILD-TYPE" "CPXM2 WILD-TYPE" "CPXM2 WILD-TYPE" "CPXM2 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"CPXM2 WILD-TYPE"   "CPXM2 MUTATED" "CPXM2 WILD-TYPE" "CPXM2 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"CPXM2 WILD-TYPE" "CPXM2 WILD-TYPE" "CPXM2 WILD-TYPE" "CPXM2 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"CPXM2 WILD-TYPE" "CPXM2 WILD-TYPE" "CPXM2 WILD-TYPE" "CPXM2 WILD-TYPE" 
     TCGA-US-A77J 
"CPXM2 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"CPXM2 WILD-TYPE" "CPXM2 WILD-TYPE" "CPXM2 WILD-TYPE" "CPXM2 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
  "CPXM2 MUTATED"   "CPXM2 MUTATED" "CPXM2 WILD-TYPE" "CPXM2 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"CPXM2 WILD-TYPE" "CPXM2 WILD-TYPE" "CPXM2 WILD-TYPE" "CPXM2 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"CPXM2 WILD-TYPE" "CPXM2 WILD-TYPE" "CPXM2 WILD-TYPE" "CPXM2 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"CPXM2 WILD-TYPE" "CPXM2 WILD-TYPE" "CPXM2 WILD-TYPE" "CPXM2 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"CPXM2 WILD-TYPE" "CPXM2 WILD-TYPE" "CPXM2 WILD-TYPE" "CPXM2 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"CPXM2 WILD-TYPE" "CPXM2 WILD-TYPE" "CPXM2 WILD-TYPE" "CPXM2 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"CPXM2 WILD-TYPE" "CPXM2 WILD-TYPE" "CPXM2 WILD-TYPE" "CPXM2 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
  "CPXM2 MUTATED" "CPXM2 WILD-TYPE" "CPXM2 WILD-TYPE" "CPXM2 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"CPXM2 WILD-TYPE" "CPXM2 WILD-TYPE" "CPXM2 WILD-TYPE" "CPXM2 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"CPXM2 WILD-TYPE" "CPXM2 WILD-TYPE" "CPXM2 WILD-TYPE" "CPXM2 WILD-TYPE" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"CPXM2 WILD-TYPE" "CPXM2 WILD-TYPE" "CPXM2 WILD-TYPE" "CPXM2 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"CPXM2 WILD-TYPE" "CPXM2 WILD-TYPE" "CPXM2 WILD-TYPE" "CPXM2 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"CPXM2 WILD-TYPE" "CPXM2 WILD-TYPE" "CPXM2 WILD-TYPE" "CPXM2 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"CPXM2 WILD-TYPE"   "CPXM2 MUTATED" "CPXM2 WILD-TYPE" "CPXM2 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"CPXM2 WILD-TYPE" "CPXM2 WILD-TYPE" "CPXM2 WILD-TYPE" "CPXM2 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"CPXM2 WILD-TYPE" "CPXM2 WILD-TYPE" "CPXM2 WILD-TYPE" "CPXM2 WILD-TYPE" 
     TCGA-US-A77J 
"CPXM2 WILD-TYPE" 
[1] "hr=" "1.4"
D398V2, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  CPXM2 MUTATED          0        0         2         1         0        1
  CPXM2 WILD-TYPE        1        4         9        50         2        2
D398V3, multiclass
                 vv
clus              T1+T2 T3+T4
  CPXM2 MUTATED       0     4
  CPXM2 WILD-TYPE     6    62
D398V4, multiclass
       clus
vv      CPXM2 MUTATED CPXM2 WILD-TYPE
  T1+T2             0               6
  T3+T4             4              62
D398V5, binary
                 cls
clus               0  1
  CPXM2 MUTATED    3  1
  CPXM2 WILD-TYPE 14 53
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CPXM2 MUTATED      3    1
  CPXM2 WILD-TYPE   14   53
   clus
vv  CPXM2 MUTATED CPXM2 WILD-TYPE
  0             3              14
  1             1              53
                 vv
clus              M0 M1 MX
  CPXM2 MUTATED    3  1  0
  CPXM2 WILD-TYPE 36  2 30
D398V6, multiclass
    clus
vv   CPXM2 MUTATED CPXM2 WILD-TYPE
  M0             3              36
  M1             1               2
  MX             0              30
D398V7, binary
                 cls
clus               0  1
  CPXM2 MUTATED    2  2
  CPXM2 WILD-TYPE 34 34
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CPXM2 MUTATED      2    2
  CPXM2 WILD-TYPE   34   34
        clus
vv       CPXM2 MUTATED CPXM2 WILD-TYPE
  FEMALE             2              34
  MALE               2              34
                 vv
clus              PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  CPXM2 MUTATED                                     4
  CPXM2 WILD-TYPE                                  61
                 vv
clus              PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  CPXM2 MUTATED                                       0
  CPXM2 WILD-TYPE                                     4
                 vv
clus              PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  CPXM2 MUTATED                                                  0
  CPXM2 WILD-TYPE                                                2
D398V8, multiclass
                                                  clus
vv                                                 CPXM2 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                          4
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                        0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA             0
                                                  clus
vv                                                 CPXM2 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                           61
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                          4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA               2
D398V9, continuous
D398V10, continuous
                 vv
clus              R0 R1 RX
  CPXM2 MUTATED    1  3  0
  CPXM2 WILD-TYPE 41 21  2
D398V11, multiclass
    clus
vv   CPXM2 MUTATED CPXM2 WILD-TYPE
  R0             1              41
  R1             3              21
  RX             0               2
D398V12, continuous

Clustering(399) Variable = KCND3 MUTATION ANALYSIS
D399V1, survival
                 sevent
clus2              0  1
  KCND3 MUTATED    0  3
  KCND3 WILD-TYPE 40 26
  KCND3 MUTATED KCND3 WILD-TYPE 
              3              66 
  KCND3 MUTATED KCND3 WILD-TYPE 
              3              26 
$`KCND3 MUTATED`
TCGA-IB-7651 TCGA-IB-7887 TCGA-IB-7888 
       19.82         3.62        43.79 

$`KCND3 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P5 TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR 
        0.13        11.93        12.66         2.47         0.03         5.46 
TCGA-FZ-5920 TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 
        2.01        36.20        20.81        12.89         7.66        13.02 
TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 
        7.89         0.92         0.66         0.13         0.26        12.13 
TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 
       11.87         0.26         0.62         0.79         0.69         3.95 
TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H 
        0.92         0.53         0.16         2.99         0.76         0.95 
TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 
        6.38         1.51        11.41        49.38         4.77        21.90 
TCGA-IB-7649 TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7889 TCGA-IB-7890 
       15.35        15.65        27.98         4.04        15.81        19.66 
TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO 
       16.04         3.85        15.98         0.56        17.16        10.82 
TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX 
        9.86         7.20        15.12         0.26         1.35         4.18 
TCGA-OE-A75W TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
        3.62         8.12        13.68        16.80        14.14        18.67 

  KCND3 MUTATED KCND3 WILD-TYPE 
           3.62            0.03 
  KCND3 MUTATED KCND3 WILD-TYPE 
          43.79           49.38 
  KCND3 MUTATED KCND3 WILD-TYPE 
          19.82            7.43 
[1] "3.6 - 43.8 (19.8)" "0.0 - 49.4 (7.4)" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"KCND3 WILD-TYPE" "KCND3 WILD-TYPE" "KCND3 WILD-TYPE" "KCND3 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"KCND3 WILD-TYPE" "KCND3 WILD-TYPE" "KCND3 WILD-TYPE" "KCND3 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"KCND3 WILD-TYPE" "KCND3 WILD-TYPE" "KCND3 WILD-TYPE" "KCND3 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"KCND3 WILD-TYPE" "KCND3 WILD-TYPE" "KCND3 WILD-TYPE" "KCND3 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"KCND3 WILD-TYPE" "KCND3 WILD-TYPE" "KCND3 WILD-TYPE" "KCND3 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"KCND3 WILD-TYPE" "KCND3 WILD-TYPE" "KCND3 WILD-TYPE" "KCND3 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"KCND3 WILD-TYPE" "KCND3 WILD-TYPE" "KCND3 WILD-TYPE" "KCND3 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"KCND3 WILD-TYPE" "KCND3 WILD-TYPE" "KCND3 WILD-TYPE" "KCND3 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"KCND3 WILD-TYPE" "KCND3 WILD-TYPE" "KCND3 WILD-TYPE" "KCND3 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"KCND3 WILD-TYPE" "KCND3 WILD-TYPE" "KCND3 WILD-TYPE" "KCND3 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"KCND3 WILD-TYPE" "KCND3 WILD-TYPE" "KCND3 WILD-TYPE"   "KCND3 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"KCND3 WILD-TYPE" "KCND3 WILD-TYPE" "KCND3 WILD-TYPE"   "KCND3 MUTATED" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
  "KCND3 MUTATED" "KCND3 WILD-TYPE" "KCND3 WILD-TYPE" "KCND3 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"KCND3 WILD-TYPE" "KCND3 WILD-TYPE" "KCND3 WILD-TYPE" "KCND3 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"KCND3 WILD-TYPE" "KCND3 WILD-TYPE" "KCND3 WILD-TYPE" "KCND3 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"KCND3 WILD-TYPE" "KCND3 WILD-TYPE" "KCND3 WILD-TYPE" "KCND3 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"KCND3 WILD-TYPE" "KCND3 WILD-TYPE" "KCND3 WILD-TYPE" "KCND3 WILD-TYPE" 
     TCGA-US-A77J 
"KCND3 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"KCND3 WILD-TYPE" "KCND3 WILD-TYPE" "KCND3 WILD-TYPE" "KCND3 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"KCND3 WILD-TYPE" "KCND3 WILD-TYPE" "KCND3 WILD-TYPE" "KCND3 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"KCND3 WILD-TYPE" "KCND3 WILD-TYPE" "KCND3 WILD-TYPE" "KCND3 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"KCND3 WILD-TYPE" "KCND3 WILD-TYPE" "KCND3 WILD-TYPE" "KCND3 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"KCND3 WILD-TYPE" "KCND3 WILD-TYPE" "KCND3 WILD-TYPE" "KCND3 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"KCND3 WILD-TYPE" "KCND3 WILD-TYPE" "KCND3 WILD-TYPE" "KCND3 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"KCND3 WILD-TYPE" "KCND3 WILD-TYPE" "KCND3 WILD-TYPE" "KCND3 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"KCND3 WILD-TYPE" "KCND3 WILD-TYPE" "KCND3 WILD-TYPE" "KCND3 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"KCND3 WILD-TYPE" "KCND3 WILD-TYPE" "KCND3 WILD-TYPE" "KCND3 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"KCND3 WILD-TYPE" "KCND3 WILD-TYPE" "KCND3 WILD-TYPE" "KCND3 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"KCND3 WILD-TYPE" "KCND3 WILD-TYPE" "KCND3 WILD-TYPE"   "KCND3 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"KCND3 WILD-TYPE" "KCND3 WILD-TYPE" "KCND3 WILD-TYPE"   "KCND3 MUTATED" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
  "KCND3 MUTATED" "KCND3 WILD-TYPE" "KCND3 WILD-TYPE" "KCND3 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"KCND3 WILD-TYPE" "KCND3 WILD-TYPE" "KCND3 WILD-TYPE" "KCND3 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"KCND3 WILD-TYPE" "KCND3 WILD-TYPE" "KCND3 WILD-TYPE" "KCND3 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"KCND3 WILD-TYPE" "KCND3 WILD-TYPE" "KCND3 WILD-TYPE" "KCND3 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"KCND3 WILD-TYPE" "KCND3 WILD-TYPE" "KCND3 WILD-TYPE" "KCND3 WILD-TYPE" 
     TCGA-US-A77J 
"KCND3 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"KCND3 WILD-TYPE" "KCND3 WILD-TYPE" "KCND3 WILD-TYPE" "KCND3 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"KCND3 WILD-TYPE" "KCND3 WILD-TYPE" "KCND3 WILD-TYPE" "KCND3 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"KCND3 WILD-TYPE" "KCND3 WILD-TYPE" "KCND3 WILD-TYPE" "KCND3 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"KCND3 WILD-TYPE" "KCND3 WILD-TYPE" "KCND3 WILD-TYPE" "KCND3 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"KCND3 WILD-TYPE" "KCND3 WILD-TYPE" "KCND3 WILD-TYPE" "KCND3 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"KCND3 WILD-TYPE" "KCND3 WILD-TYPE" "KCND3 WILD-TYPE" "KCND3 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"KCND3 WILD-TYPE" "KCND3 WILD-TYPE" "KCND3 WILD-TYPE" "KCND3 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"KCND3 WILD-TYPE" "KCND3 WILD-TYPE" "KCND3 WILD-TYPE" "KCND3 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"KCND3 WILD-TYPE" "KCND3 WILD-TYPE" "KCND3 WILD-TYPE" "KCND3 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"KCND3 WILD-TYPE" "KCND3 WILD-TYPE" "KCND3 WILD-TYPE" "KCND3 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"KCND3 WILD-TYPE" "KCND3 WILD-TYPE" "KCND3 WILD-TYPE"   "KCND3 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"KCND3 WILD-TYPE" "KCND3 WILD-TYPE" "KCND3 WILD-TYPE"   "KCND3 MUTATED" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
  "KCND3 MUTATED" "KCND3 WILD-TYPE" "KCND3 WILD-TYPE" "KCND3 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"KCND3 WILD-TYPE" "KCND3 WILD-TYPE" "KCND3 WILD-TYPE" "KCND3 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"KCND3 WILD-TYPE" "KCND3 WILD-TYPE" "KCND3 WILD-TYPE" "KCND3 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"KCND3 WILD-TYPE" "KCND3 WILD-TYPE" "KCND3 WILD-TYPE" "KCND3 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"KCND3 WILD-TYPE" "KCND3 WILD-TYPE" "KCND3 WILD-TYPE" "KCND3 WILD-TYPE" 
     TCGA-US-A77J 
"KCND3 WILD-TYPE" 
[1] "hr=" "1.2"
D399V2, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  KCND3 MUTATED          0        0         1         2         0        0
  KCND3 WILD-TYPE        1        4        10        49         2        3
D399V3, multiclass
                 vv
clus              T1+T2 T3+T4
  KCND3 MUTATED       0     3
  KCND3 WILD-TYPE     6    63
D399V4, multiclass
       clus
vv      KCND3 MUTATED KCND3 WILD-TYPE
  T1+T2             0               6
  T3+T4             3              63
D399V5, binary
                 cls
clus               0  1
  KCND3 MUTATED    1  2
  KCND3 WILD-TYPE 16 52
[1] "tbl2"
                 cls
clus              [,1] [,2]
  KCND3 MUTATED      1    2
  KCND3 WILD-TYPE   16   52
   clus
vv  KCND3 MUTATED KCND3 WILD-TYPE
  0             1              16
  1             2              52
                 vv
clus              M0 M1 MX
  KCND3 MUTATED    3  0  0
  KCND3 WILD-TYPE 36  3 30
D399V6, multiclass
    clus
vv   KCND3 MUTATED KCND3 WILD-TYPE
  M0             3              36
  M1             0               3
  MX             0              30
D399V7, binary
                 cls
clus               0  1
  KCND3 MUTATED    3  0
  KCND3 WILD-TYPE 33 36
[1] "tbl2"
                 cls
clus              [,1] [,2]
  KCND3 MUTATED      3    0
  KCND3 WILD-TYPE   33   36
        clus
vv       KCND3 MUTATED KCND3 WILD-TYPE
  FEMALE             3              33
  MALE               0              36
                 vv
clus              PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  KCND3 MUTATED                                     3
  KCND3 WILD-TYPE                                  62
                 vv
clus              PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  KCND3 MUTATED                                       0
  KCND3 WILD-TYPE                                     4
                 vv
clus              PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  KCND3 MUTATED                                                  0
  KCND3 WILD-TYPE                                                2
D399V8, multiclass
                                                  clus
vv                                                 KCND3 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                          3
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                        0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA             0
                                                  clus
vv                                                 KCND3 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                           62
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                          4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA               2
D399V9, continuous
[1] "Remove cluster labels:" "KCND3 MUTATED"         
clus
  KCND3 MUTATED KCND3 WILD-TYPE 
              2              20 
     TCGA-F2-6880      TCGA-FB-A4P5      TCGA-FB-A4P6      TCGA-FB-A5VM 
"KCND3 WILD-TYPE" "KCND3 WILD-TYPE" "KCND3 WILD-TYPE" "KCND3 WILD-TYPE" 
     TCGA-FB-A78T      TCGA-FB-A7DR      TCGA-H6-8124      TCGA-H6-A45N 
"KCND3 WILD-TYPE" "KCND3 WILD-TYPE" "KCND3 WILD-TYPE" "KCND3 WILD-TYPE" 
     TCGA-H8-A6C1      TCGA-IB-7644      TCGA-IB-7649      TCGA-IB-7885 
"KCND3 WILD-TYPE" "KCND3 WILD-TYPE" "KCND3 WILD-TYPE" "KCND3 WILD-TYPE" 
     TCGA-IB-7886      TCGA-IB-7891      TCGA-IB-8126      TCGA-IB-8127 
"KCND3 WILD-TYPE" "KCND3 WILD-TYPE" "KCND3 WILD-TYPE" "KCND3 WILD-TYPE" 
     TCGA-IB-A5SS      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"KCND3 WILD-TYPE" "KCND3 WILD-TYPE" "KCND3 WILD-TYPE" "KCND3 WILD-TYPE" 
D399V10, continuous
[1] "Remove cluster labels:" "KCND3 MUTATED"         
clus
  KCND3 MUTATED KCND3 WILD-TYPE 
              1              18 
     TCGA-FB-A4P5      TCGA-FB-A4P6      TCGA-FB-A5VM      TCGA-FB-A78T 
"KCND3 WILD-TYPE" "KCND3 WILD-TYPE" "KCND3 WILD-TYPE" "KCND3 WILD-TYPE" 
     TCGA-FB-A7DR      TCGA-H6-8124      TCGA-H8-A6C1      TCGA-IB-7644 
"KCND3 WILD-TYPE" "KCND3 WILD-TYPE" "KCND3 WILD-TYPE" "KCND3 WILD-TYPE" 
     TCGA-IB-7649      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7891 
"KCND3 WILD-TYPE" "KCND3 WILD-TYPE" "KCND3 WILD-TYPE" "KCND3 WILD-TYPE" 
     TCGA-IB-8126      TCGA-IB-8127      TCGA-IB-A5SS      TCGA-IB-A6UG 
"KCND3 WILD-TYPE" "KCND3 WILD-TYPE" "KCND3 WILD-TYPE" "KCND3 WILD-TYPE" 
     TCGA-LB-A7SX      TCGA-OE-A75W 
"KCND3 WILD-TYPE" "KCND3 WILD-TYPE" 
                 vv
clus              R0 R1 RX
  KCND3 MUTATED    2  1  0
  KCND3 WILD-TYPE 40 23  2
D399V11, multiclass
    clus
vv   KCND3 MUTATED KCND3 WILD-TYPE
  R0             2              40
  R1             1              23
  RX             0               2
D399V12, continuous

Clustering(400) Variable = GRM1 MUTATION ANALYSIS
D400V1, survival
                sevent
clus2             0  1
  GRM1 MUTATED    5  4
  GRM1 WILD-TYPE 35 25
  GRM1 MUTATED GRM1 WILD-TYPE 
             9             60 
  GRM1 MUTATED GRM1 WILD-TYPE 
             4             25 
$`GRM1 MUTATED`
TCGA-F2-6880 TCGA-HZ-8003 TCGA-HZ-A49H TCGA-IB-7645 TCGA-IB-7647 TCGA-IB-7651 
        9.70         0.69         0.95        49.38        21.90        19.82 
TCGA-IB-7897 TCGA-IB-A5SP TCGA-LB-A7SX 
       15.98         9.86         4.18 

$`GRM1 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H TCGA-FB-A4P5 
       10.98        11.84         7.10         5.03        19.27         0.13 
TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR TCGA-FZ-5920 
       11.93        12.66         2.47         0.03         5.46         2.01 
TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7289 
       36.20        20.81        12.89         7.66        13.02         7.89 
TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 
        0.92         0.66         0.13         0.26        12.13        11.87 
TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 
        0.26         0.62         0.79         3.95         0.92         0.53 
TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 
        0.16         2.99         0.76         6.38         1.51        11.41 
TCGA-IB-7646 TCGA-IB-7649 TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 
        4.77        15.35        15.65        27.98         4.04         3.62 
TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-8126 
       43.79        15.81        19.66        16.04         3.85         0.56 
TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG 
       17.16        10.82         7.20        15.12         0.26         1.35 
TCGA-OE-A75W TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
        3.62         8.12        13.68        16.80        14.14        18.67 

  GRM1 MUTATED GRM1 WILD-TYPE 
          0.69           0.03 
  GRM1 MUTATED GRM1 WILD-TYPE 
         49.38          43.79 
  GRM1 MUTATED GRM1 WILD-TYPE 
          9.86           7.15 
[1] "0.7 - 49.4 (9.9)" "0.0 - 43.8 (7.2)"
    TCGA-F2-6879     TCGA-F2-6880     TCGA-F2-7273     TCGA-F2-7276 
"GRM1 WILD-TYPE"   "GRM1 MUTATED" "GRM1 WILD-TYPE" "GRM1 WILD-TYPE" 
    TCGA-F2-A44G     TCGA-F2-A44H     TCGA-FB-A4P5     TCGA-FB-A4P6 
"GRM1 WILD-TYPE" "GRM1 WILD-TYPE" "GRM1 WILD-TYPE" "GRM1 WILD-TYPE" 
    TCGA-FB-A545     TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-FB-A7DR 
"GRM1 WILD-TYPE" "GRM1 WILD-TYPE" "GRM1 WILD-TYPE" "GRM1 WILD-TYPE" 
    TCGA-FZ-5920     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-H6-8124 
"GRM1 WILD-TYPE" "GRM1 WILD-TYPE" "GRM1 WILD-TYPE" "GRM1 WILD-TYPE" 
    TCGA-H6-A45N     TCGA-H8-A6C1     TCGA-HZ-7289     TCGA-HZ-7918 
"GRM1 WILD-TYPE" "GRM1 WILD-TYPE" "GRM1 WILD-TYPE" "GRM1 WILD-TYPE" 
    TCGA-HZ-7919     TCGA-HZ-7922     TCGA-HZ-7923     TCGA-HZ-7924 
"GRM1 WILD-TYPE" "GRM1 WILD-TYPE" "GRM1 WILD-TYPE" "GRM1 WILD-TYPE" 
    TCGA-HZ-7925     TCGA-HZ-7926     TCGA-HZ-8001     TCGA-HZ-8002 
"GRM1 WILD-TYPE" "GRM1 WILD-TYPE" "GRM1 WILD-TYPE" "GRM1 WILD-TYPE" 
    TCGA-HZ-8003     TCGA-HZ-8005     TCGA-HZ-8315     TCGA-HZ-8317 
  "GRM1 MUTATED" "GRM1 WILD-TYPE" "GRM1 WILD-TYPE" "GRM1 WILD-TYPE" 
    TCGA-HZ-8636     TCGA-HZ-8638     TCGA-HZ-A49G     TCGA-HZ-A49H 
"GRM1 WILD-TYPE" "GRM1 WILD-TYPE" "GRM1 WILD-TYPE"   "GRM1 MUTATED" 
    TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-IB-7644     TCGA-IB-7645 
"GRM1 WILD-TYPE" "GRM1 WILD-TYPE" "GRM1 WILD-TYPE"   "GRM1 MUTATED" 
    TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7651 
"GRM1 WILD-TYPE"   "GRM1 MUTATED" "GRM1 WILD-TYPE"   "GRM1 MUTATED" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887 
"GRM1 WILD-TYPE" "GRM1 WILD-TYPE" "GRM1 WILD-TYPE" "GRM1 WILD-TYPE" 
    TCGA-IB-7888     TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891 
"GRM1 WILD-TYPE" "GRM1 WILD-TYPE" "GRM1 WILD-TYPE" "GRM1 WILD-TYPE" 
    TCGA-IB-7893     TCGA-IB-7897     TCGA-IB-8126     TCGA-IB-8127 
"GRM1 WILD-TYPE"   "GRM1 MUTATED" "GRM1 WILD-TYPE" "GRM1 WILD-TYPE" 
    TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS 
"GRM1 WILD-TYPE"   "GRM1 MUTATED" "GRM1 WILD-TYPE" "GRM1 WILD-TYPE" 
    TCGA-IB-A5ST     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
"GRM1 WILD-TYPE" "GRM1 WILD-TYPE"   "GRM1 MUTATED" "GRM1 WILD-TYPE" 
    TCGA-PZ-A5RE     TCGA-Q3-A5QY     TCGA-US-A779     TCGA-US-A77E 
"GRM1 WILD-TYPE" "GRM1 WILD-TYPE" "GRM1 WILD-TYPE" "GRM1 WILD-TYPE" 
    TCGA-US-A77J 
"GRM1 WILD-TYPE" 
    TCGA-F2-6879     TCGA-F2-6880     TCGA-F2-7273     TCGA-F2-7276 
"GRM1 WILD-TYPE"   "GRM1 MUTATED" "GRM1 WILD-TYPE" "GRM1 WILD-TYPE" 
    TCGA-F2-A44G     TCGA-F2-A44H     TCGA-FB-A4P5     TCGA-FB-A4P6 
"GRM1 WILD-TYPE" "GRM1 WILD-TYPE" "GRM1 WILD-TYPE" "GRM1 WILD-TYPE" 
    TCGA-FB-A545     TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-FB-A7DR 
"GRM1 WILD-TYPE" "GRM1 WILD-TYPE" "GRM1 WILD-TYPE" "GRM1 WILD-TYPE" 
    TCGA-FZ-5920     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-H6-8124 
"GRM1 WILD-TYPE" "GRM1 WILD-TYPE" "GRM1 WILD-TYPE" "GRM1 WILD-TYPE" 
    TCGA-H6-A45N     TCGA-H8-A6C1     TCGA-HZ-7289     TCGA-HZ-7918 
"GRM1 WILD-TYPE" "GRM1 WILD-TYPE" "GRM1 WILD-TYPE" "GRM1 WILD-TYPE" 
    TCGA-HZ-7919     TCGA-HZ-7922     TCGA-HZ-7923     TCGA-HZ-7924 
"GRM1 WILD-TYPE" "GRM1 WILD-TYPE" "GRM1 WILD-TYPE" "GRM1 WILD-TYPE" 
    TCGA-HZ-7925     TCGA-HZ-7926     TCGA-HZ-8001     TCGA-HZ-8002 
"GRM1 WILD-TYPE" "GRM1 WILD-TYPE" "GRM1 WILD-TYPE" "GRM1 WILD-TYPE" 
    TCGA-HZ-8003     TCGA-HZ-8005     TCGA-HZ-8315     TCGA-HZ-8317 
  "GRM1 MUTATED" "GRM1 WILD-TYPE" "GRM1 WILD-TYPE" "GRM1 WILD-TYPE" 
    TCGA-HZ-8636     TCGA-HZ-8638     TCGA-HZ-A49G     TCGA-HZ-A49H 
"GRM1 WILD-TYPE" "GRM1 WILD-TYPE" "GRM1 WILD-TYPE"   "GRM1 MUTATED" 
    TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-IB-7644     TCGA-IB-7645 
"GRM1 WILD-TYPE" "GRM1 WILD-TYPE" "GRM1 WILD-TYPE"   "GRM1 MUTATED" 
    TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7651 
"GRM1 WILD-TYPE"   "GRM1 MUTATED" "GRM1 WILD-TYPE"   "GRM1 MUTATED" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887 
"GRM1 WILD-TYPE" "GRM1 WILD-TYPE" "GRM1 WILD-TYPE" "GRM1 WILD-TYPE" 
    TCGA-IB-7888     TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891 
"GRM1 WILD-TYPE" "GRM1 WILD-TYPE" "GRM1 WILD-TYPE" "GRM1 WILD-TYPE" 
    TCGA-IB-7893     TCGA-IB-7897     TCGA-IB-8126     TCGA-IB-8127 
"GRM1 WILD-TYPE"   "GRM1 MUTATED" "GRM1 WILD-TYPE" "GRM1 WILD-TYPE" 
    TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS 
"GRM1 WILD-TYPE"   "GRM1 MUTATED" "GRM1 WILD-TYPE" "GRM1 WILD-TYPE" 
    TCGA-IB-A5ST     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
"GRM1 WILD-TYPE" "GRM1 WILD-TYPE"   "GRM1 MUTATED" "GRM1 WILD-TYPE" 
    TCGA-PZ-A5RE     TCGA-Q3-A5QY     TCGA-US-A779     TCGA-US-A77E 
"GRM1 WILD-TYPE" "GRM1 WILD-TYPE" "GRM1 WILD-TYPE" "GRM1 WILD-TYPE" 
    TCGA-US-A77J 
"GRM1 WILD-TYPE" 
    TCGA-F2-6879     TCGA-F2-6880     TCGA-F2-7273     TCGA-F2-7276 
"GRM1 WILD-TYPE"   "GRM1 MUTATED" "GRM1 WILD-TYPE" "GRM1 WILD-TYPE" 
    TCGA-F2-A44G     TCGA-F2-A44H     TCGA-FB-A4P5     TCGA-FB-A4P6 
"GRM1 WILD-TYPE" "GRM1 WILD-TYPE" "GRM1 WILD-TYPE" "GRM1 WILD-TYPE" 
    TCGA-FB-A545     TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-FB-A7DR 
"GRM1 WILD-TYPE" "GRM1 WILD-TYPE" "GRM1 WILD-TYPE" "GRM1 WILD-TYPE" 
    TCGA-FZ-5920     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-H6-8124 
"GRM1 WILD-TYPE" "GRM1 WILD-TYPE" "GRM1 WILD-TYPE" "GRM1 WILD-TYPE" 
    TCGA-H6-A45N     TCGA-H8-A6C1     TCGA-HZ-7289     TCGA-HZ-7918 
"GRM1 WILD-TYPE" "GRM1 WILD-TYPE" "GRM1 WILD-TYPE" "GRM1 WILD-TYPE" 
    TCGA-HZ-7919     TCGA-HZ-7922     TCGA-HZ-7923     TCGA-HZ-7924 
"GRM1 WILD-TYPE" "GRM1 WILD-TYPE" "GRM1 WILD-TYPE" "GRM1 WILD-TYPE" 
    TCGA-HZ-7925     TCGA-HZ-7926     TCGA-HZ-8001     TCGA-HZ-8002 
"GRM1 WILD-TYPE" "GRM1 WILD-TYPE" "GRM1 WILD-TYPE" "GRM1 WILD-TYPE" 
    TCGA-HZ-8003     TCGA-HZ-8005     TCGA-HZ-8315     TCGA-HZ-8317 
  "GRM1 MUTATED" "GRM1 WILD-TYPE" "GRM1 WILD-TYPE" "GRM1 WILD-TYPE" 
    TCGA-HZ-8636     TCGA-HZ-8638     TCGA-HZ-A49G     TCGA-HZ-A49H 
"GRM1 WILD-TYPE" "GRM1 WILD-TYPE" "GRM1 WILD-TYPE"   "GRM1 MUTATED" 
    TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-IB-7644     TCGA-IB-7645 
"GRM1 WILD-TYPE" "GRM1 WILD-TYPE" "GRM1 WILD-TYPE"   "GRM1 MUTATED" 
    TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7651 
"GRM1 WILD-TYPE"   "GRM1 MUTATED" "GRM1 WILD-TYPE"   "GRM1 MUTATED" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887 
"GRM1 WILD-TYPE" "GRM1 WILD-TYPE" "GRM1 WILD-TYPE" "GRM1 WILD-TYPE" 
    TCGA-IB-7888     TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891 
"GRM1 WILD-TYPE" "GRM1 WILD-TYPE" "GRM1 WILD-TYPE" "GRM1 WILD-TYPE" 
    TCGA-IB-7893     TCGA-IB-7897     TCGA-IB-8126     TCGA-IB-8127 
"GRM1 WILD-TYPE"   "GRM1 MUTATED" "GRM1 WILD-TYPE" "GRM1 WILD-TYPE" 
    TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS 
"GRM1 WILD-TYPE"   "GRM1 MUTATED" "GRM1 WILD-TYPE" "GRM1 WILD-TYPE" 
    TCGA-IB-A5ST     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
"GRM1 WILD-TYPE" "GRM1 WILD-TYPE"   "GRM1 MUTATED" "GRM1 WILD-TYPE" 
    TCGA-PZ-A5RE     TCGA-Q3-A5QY     TCGA-US-A779     TCGA-US-A77E 
"GRM1 WILD-TYPE" "GRM1 WILD-TYPE" "GRM1 WILD-TYPE" "GRM1 WILD-TYPE" 
    TCGA-US-A77J 
"GRM1 WILD-TYPE" 
[1] "hr=" "2.6"
D400V2, continuous
                vv
clus             STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  GRM1 MUTATED          0        0         1         8         0        0
  GRM1 WILD-TYPE        1        4        10        43         2        3
D400V3, multiclass
                vv
clus             T1+T2 T3+T4
  GRM1 MUTATED       0     9
  GRM1 WILD-TYPE     6    57
D400V4, multiclass
       clus
vv      GRM1 MUTATED GRM1 WILD-TYPE
  T1+T2            0              6
  T3+T4            9             57
D400V5, binary
                cls
clus              0  1
  GRM1 MUTATED    1  8
  GRM1 WILD-TYPE 16 46
[1] "tbl2"
                cls
clus             [,1] [,2]
  GRM1 MUTATED      1    8
  GRM1 WILD-TYPE   16   46
   clus
vv  GRM1 MUTATED GRM1 WILD-TYPE
  0            1             16
  1            8             46
                vv
clus             M0 M1 MX
  GRM1 MUTATED    6  0  3
  GRM1 WILD-TYPE 33  3 27
D400V6, multiclass
    clus
vv   GRM1 MUTATED GRM1 WILD-TYPE
  M0            6             33
  M1            0              3
  MX            3             27
D400V7, binary
                cls
clus              0  1
  GRM1 MUTATED    7  2
  GRM1 WILD-TYPE 29 34
[1] "tbl2"
                cls
clus             [,1] [,2]
  GRM1 MUTATED      7    2
  GRM1 WILD-TYPE   29   34
        clus
vv       GRM1 MUTATED GRM1 WILD-TYPE
  FEMALE            7             29
  MALE              2             34
                vv
clus             PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  GRM1 MUTATED                                     9
  GRM1 WILD-TYPE                                  56
                vv
clus             PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  GRM1 MUTATED                                       0
  GRM1 WILD-TYPE                                     4
                vv
clus             PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  GRM1 MUTATED                                                  0
  GRM1 WILD-TYPE                                                2
D400V8, multiclass
                                                  clus
vv                                                 GRM1 MUTATED GRM1 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                         9             56
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                       0              4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA            0              2
D400V9, continuous
D400V10, continuous
[1] "Remove cluster labels:" "GRM1 MUTATED"          
clus
  GRM1 MUTATED GRM1 WILD-TYPE 
             2             17 
    TCGA-FB-A4P5     TCGA-FB-A4P6     TCGA-FB-A5VM     TCGA-FB-A78T 
"GRM1 WILD-TYPE" "GRM1 WILD-TYPE" "GRM1 WILD-TYPE" "GRM1 WILD-TYPE" 
    TCGA-FB-A7DR     TCGA-H6-8124     TCGA-H8-A6C1     TCGA-IB-7644 
"GRM1 WILD-TYPE" "GRM1 WILD-TYPE" "GRM1 WILD-TYPE" "GRM1 WILD-TYPE" 
    TCGA-IB-7649     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7891 
"GRM1 WILD-TYPE" "GRM1 WILD-TYPE" "GRM1 WILD-TYPE" "GRM1 WILD-TYPE" 
    TCGA-IB-8126     TCGA-IB-8127     TCGA-IB-A5SS     TCGA-IB-A6UG 
"GRM1 WILD-TYPE" "GRM1 WILD-TYPE" "GRM1 WILD-TYPE" "GRM1 WILD-TYPE" 
    TCGA-OE-A75W 
"GRM1 WILD-TYPE" 
                vv
clus             R0 R1 RX
  GRM1 MUTATED    6  3  0
  GRM1 WILD-TYPE 36 21  2
D400V11, multiclass
    clus
vv   GRM1 MUTATED GRM1 WILD-TYPE
  R0            6             36
  R1            3             21
  RX            0              2
D400V12, continuous

Clustering(401) Variable = MRPL48 MUTATION ANALYSIS
D401V1, survival
                  sevent
clus2               0  1
  MRPL48 MUTATED    2  1
  MRPL48 WILD-TYPE 38 28
  MRPL48 MUTATED MRPL48 WILD-TYPE 
               3               66 
  MRPL48 MUTATED MRPL48 WILD-TYPE 
               1               28 
$`MRPL48 MUTATED`
TCGA-HZ-7918 TCGA-HZ-8003 TCGA-IB-7651 
        0.92         0.69        19.82 

$`MRPL48 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P5 TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR 
        0.13        11.93        12.66         2.47         0.03         5.46 
TCGA-FZ-5920 TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 
        2.01        36.20        20.81        12.89         7.66        13.02 
TCGA-HZ-7289 TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 
        7.89         0.66         0.13         0.26        12.13        11.87 
TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 
        0.26         0.62         0.79         3.95         0.92         0.53 
TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK 
        0.16         2.99         0.76         0.95         6.38         1.51 
TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7652 
       11.41        49.38         4.77        21.90        15.35        15.65 
TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 
       27.98         4.04         3.62        43.79        15.81        19.66 
TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO 
       16.04         3.85        15.98         0.56        17.16        10.82 
TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX 
        9.86         7.20        15.12         0.26         1.35         4.18 
TCGA-OE-A75W TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
        3.62         8.12        13.68        16.80        14.14        18.67 

  MRPL48 MUTATED MRPL48 WILD-TYPE 
            0.69             0.03 
  MRPL48 MUTATED MRPL48 WILD-TYPE 
           19.82            49.38 
  MRPL48 MUTATED MRPL48 WILD-TYPE 
           0.920            7.775 
[1] "0.7 - 19.8 (0.9)" "0.0 - 49.4 (7.8)"
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
"MRPL48 WILD-TYPE" "MRPL48 WILD-TYPE" "MRPL48 WILD-TYPE" "MRPL48 WILD-TYPE" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"MRPL48 WILD-TYPE" "MRPL48 WILD-TYPE" "MRPL48 WILD-TYPE" "MRPL48 WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
"MRPL48 WILD-TYPE" "MRPL48 WILD-TYPE" "MRPL48 WILD-TYPE" "MRPL48 WILD-TYPE" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"MRPL48 WILD-TYPE" "MRPL48 WILD-TYPE" "MRPL48 WILD-TYPE" "MRPL48 WILD-TYPE" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
"MRPL48 WILD-TYPE" "MRPL48 WILD-TYPE" "MRPL48 WILD-TYPE"   "MRPL48 MUTATED" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
"MRPL48 WILD-TYPE" "MRPL48 WILD-TYPE" "MRPL48 WILD-TYPE" "MRPL48 WILD-TYPE" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"MRPL48 WILD-TYPE" "MRPL48 WILD-TYPE" "MRPL48 WILD-TYPE" "MRPL48 WILD-TYPE" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
  "MRPL48 MUTATED" "MRPL48 WILD-TYPE" "MRPL48 WILD-TYPE" "MRPL48 WILD-TYPE" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
"MRPL48 WILD-TYPE" "MRPL48 WILD-TYPE" "MRPL48 WILD-TYPE" "MRPL48 WILD-TYPE" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
"MRPL48 WILD-TYPE" "MRPL48 WILD-TYPE" "MRPL48 WILD-TYPE" "MRPL48 WILD-TYPE" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
"MRPL48 WILD-TYPE" "MRPL48 WILD-TYPE" "MRPL48 WILD-TYPE"   "MRPL48 MUTATED" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
"MRPL48 WILD-TYPE" "MRPL48 WILD-TYPE" "MRPL48 WILD-TYPE" "MRPL48 WILD-TYPE" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
"MRPL48 WILD-TYPE" "MRPL48 WILD-TYPE" "MRPL48 WILD-TYPE" "MRPL48 WILD-TYPE" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
"MRPL48 WILD-TYPE" "MRPL48 WILD-TYPE" "MRPL48 WILD-TYPE" "MRPL48 WILD-TYPE" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"MRPL48 WILD-TYPE" "MRPL48 WILD-TYPE" "MRPL48 WILD-TYPE" "MRPL48 WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"MRPL48 WILD-TYPE" "MRPL48 WILD-TYPE" "MRPL48 WILD-TYPE" "MRPL48 WILD-TYPE" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
"MRPL48 WILD-TYPE" "MRPL48 WILD-TYPE" "MRPL48 WILD-TYPE" "MRPL48 WILD-TYPE" 
      TCGA-US-A77J 
"MRPL48 WILD-TYPE" 
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
"MRPL48 WILD-TYPE" "MRPL48 WILD-TYPE" "MRPL48 WILD-TYPE" "MRPL48 WILD-TYPE" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"MRPL48 WILD-TYPE" "MRPL48 WILD-TYPE" "MRPL48 WILD-TYPE" "MRPL48 WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
"MRPL48 WILD-TYPE" "MRPL48 WILD-TYPE" "MRPL48 WILD-TYPE" "MRPL48 WILD-TYPE" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"MRPL48 WILD-TYPE" "MRPL48 WILD-TYPE" "MRPL48 WILD-TYPE" "MRPL48 WILD-TYPE" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
"MRPL48 WILD-TYPE" "MRPL48 WILD-TYPE" "MRPL48 WILD-TYPE"   "MRPL48 MUTATED" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
"MRPL48 WILD-TYPE" "MRPL48 WILD-TYPE" "MRPL48 WILD-TYPE" "MRPL48 WILD-TYPE" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"MRPL48 WILD-TYPE" "MRPL48 WILD-TYPE" "MRPL48 WILD-TYPE" "MRPL48 WILD-TYPE" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
  "MRPL48 MUTATED" "MRPL48 WILD-TYPE" "MRPL48 WILD-TYPE" "MRPL48 WILD-TYPE" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
"MRPL48 WILD-TYPE" "MRPL48 WILD-TYPE" "MRPL48 WILD-TYPE" "MRPL48 WILD-TYPE" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
"MRPL48 WILD-TYPE" "MRPL48 WILD-TYPE" "MRPL48 WILD-TYPE" "MRPL48 WILD-TYPE" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
"MRPL48 WILD-TYPE" "MRPL48 WILD-TYPE" "MRPL48 WILD-TYPE"   "MRPL48 MUTATED" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
"MRPL48 WILD-TYPE" "MRPL48 WILD-TYPE" "MRPL48 WILD-TYPE" "MRPL48 WILD-TYPE" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
"MRPL48 WILD-TYPE" "MRPL48 WILD-TYPE" "MRPL48 WILD-TYPE" "MRPL48 WILD-TYPE" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
"MRPL48 WILD-TYPE" "MRPL48 WILD-TYPE" "MRPL48 WILD-TYPE" "MRPL48 WILD-TYPE" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"MRPL48 WILD-TYPE" "MRPL48 WILD-TYPE" "MRPL48 WILD-TYPE" "MRPL48 WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"MRPL48 WILD-TYPE" "MRPL48 WILD-TYPE" "MRPL48 WILD-TYPE" "MRPL48 WILD-TYPE" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
"MRPL48 WILD-TYPE" "MRPL48 WILD-TYPE" "MRPL48 WILD-TYPE" "MRPL48 WILD-TYPE" 
      TCGA-US-A77J 
"MRPL48 WILD-TYPE" 
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
"MRPL48 WILD-TYPE" "MRPL48 WILD-TYPE" "MRPL48 WILD-TYPE" "MRPL48 WILD-TYPE" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"MRPL48 WILD-TYPE" "MRPL48 WILD-TYPE" "MRPL48 WILD-TYPE" "MRPL48 WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
"MRPL48 WILD-TYPE" "MRPL48 WILD-TYPE" "MRPL48 WILD-TYPE" "MRPL48 WILD-TYPE" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"MRPL48 WILD-TYPE" "MRPL48 WILD-TYPE" "MRPL48 WILD-TYPE" "MRPL48 WILD-TYPE" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
"MRPL48 WILD-TYPE" "MRPL48 WILD-TYPE" "MRPL48 WILD-TYPE"   "MRPL48 MUTATED" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
"MRPL48 WILD-TYPE" "MRPL48 WILD-TYPE" "MRPL48 WILD-TYPE" "MRPL48 WILD-TYPE" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"MRPL48 WILD-TYPE" "MRPL48 WILD-TYPE" "MRPL48 WILD-TYPE" "MRPL48 WILD-TYPE" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
  "MRPL48 MUTATED" "MRPL48 WILD-TYPE" "MRPL48 WILD-TYPE" "MRPL48 WILD-TYPE" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
"MRPL48 WILD-TYPE" "MRPL48 WILD-TYPE" "MRPL48 WILD-TYPE" "MRPL48 WILD-TYPE" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
"MRPL48 WILD-TYPE" "MRPL48 WILD-TYPE" "MRPL48 WILD-TYPE" "MRPL48 WILD-TYPE" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
"MRPL48 WILD-TYPE" "MRPL48 WILD-TYPE" "MRPL48 WILD-TYPE"   "MRPL48 MUTATED" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
"MRPL48 WILD-TYPE" "MRPL48 WILD-TYPE" "MRPL48 WILD-TYPE" "MRPL48 WILD-TYPE" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
"MRPL48 WILD-TYPE" "MRPL48 WILD-TYPE" "MRPL48 WILD-TYPE" "MRPL48 WILD-TYPE" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
"MRPL48 WILD-TYPE" "MRPL48 WILD-TYPE" "MRPL48 WILD-TYPE" "MRPL48 WILD-TYPE" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"MRPL48 WILD-TYPE" "MRPL48 WILD-TYPE" "MRPL48 WILD-TYPE" "MRPL48 WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"MRPL48 WILD-TYPE" "MRPL48 WILD-TYPE" "MRPL48 WILD-TYPE" "MRPL48 WILD-TYPE" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
"MRPL48 WILD-TYPE" "MRPL48 WILD-TYPE" "MRPL48 WILD-TYPE" "MRPL48 WILD-TYPE" 
      TCGA-US-A77J 
"MRPL48 WILD-TYPE" 
[1] "hr=" "1.2"
D401V2, continuous
                  vv
clus               STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  MRPL48 MUTATED          0        0         0         3         0        0
  MRPL48 WILD-TYPE        1        4        11        48         2        3
D401V3, multiclass
                  vv
clus               T1+T2 T3+T4
  MRPL48 MUTATED       0     3
  MRPL48 WILD-TYPE     6    63
D401V4, multiclass
       clus
vv      MRPL48 MUTATED MRPL48 WILD-TYPE
  T1+T2              0                6
  T3+T4              3               63
D401V5, binary
                  cls
clus                0  1
  MRPL48 MUTATED    0  3
  MRPL48 WILD-TYPE 17 51
[1] "tbl2"
                  cls
clus               [,1] [,2]
  MRPL48 MUTATED      0    3
  MRPL48 WILD-TYPE   17   51
   clus
vv  MRPL48 MUTATED MRPL48 WILD-TYPE
  0              0               17
  1              3               51
                  vv
clus               M0 M1 MX
  MRPL48 MUTATED    2  0  1
  MRPL48 WILD-TYPE 37  3 29
D401V6, multiclass
    clus
vv   MRPL48 MUTATED MRPL48 WILD-TYPE
  M0              2               37
  M1              0                3
  MX              1               29
D401V7, binary
                  cls
clus                0  1
  MRPL48 MUTATED    2  1
  MRPL48 WILD-TYPE 34 35
[1] "tbl2"
                  cls
clus               [,1] [,2]
  MRPL48 MUTATED      2    1
  MRPL48 WILD-TYPE   34   35
        clus
vv       MRPL48 MUTATED MRPL48 WILD-TYPE
  FEMALE              2               34
  MALE                1               35
                  vv
clus               PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  MRPL48 MUTATED                                     3
  MRPL48 WILD-TYPE                                  62
                  vv
clus               PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  MRPL48 MUTATED                                       0
  MRPL48 WILD-TYPE                                     4
                  vv
clus               PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  MRPL48 MUTATED                                                  0
  MRPL48 WILD-TYPE                                                2
D401V8, multiclass
                                                  clus
vv                                                 MRPL48 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                           3
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                         0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA              0
                                                  clus
vv                                                 MRPL48 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                            62
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                           4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                2
D401V9, continuous
[1] "Remove cluster labels:" "MRPL48 MUTATED"        
clus
  MRPL48 MUTATED MRPL48 WILD-TYPE 
               1               21 
      TCGA-F2-6880       TCGA-FB-A4P5       TCGA-FB-A4P6       TCGA-FB-A5VM 
"MRPL48 WILD-TYPE" "MRPL48 WILD-TYPE" "MRPL48 WILD-TYPE" "MRPL48 WILD-TYPE" 
      TCGA-FB-A78T       TCGA-FB-A7DR       TCGA-H6-8124       TCGA-H6-A45N 
"MRPL48 WILD-TYPE" "MRPL48 WILD-TYPE" "MRPL48 WILD-TYPE" "MRPL48 WILD-TYPE" 
      TCGA-H8-A6C1       TCGA-IB-7644       TCGA-IB-7649       TCGA-IB-7885 
"MRPL48 WILD-TYPE" "MRPL48 WILD-TYPE" "MRPL48 WILD-TYPE" "MRPL48 WILD-TYPE" 
      TCGA-IB-7886       TCGA-IB-7887       TCGA-IB-7891       TCGA-IB-8126 
"MRPL48 WILD-TYPE" "MRPL48 WILD-TYPE" "MRPL48 WILD-TYPE" "MRPL48 WILD-TYPE" 
      TCGA-IB-8127       TCGA-IB-A5SS       TCGA-IB-A6UG       TCGA-LB-A7SX 
"MRPL48 WILD-TYPE" "MRPL48 WILD-TYPE" "MRPL48 WILD-TYPE" "MRPL48 WILD-TYPE" 
      TCGA-OE-A75W 
"MRPL48 WILD-TYPE" 
D401V10, continuous
[1] "Remove cluster labels:" "MRPL48 MUTATED"        
clus
  MRPL48 MUTATED MRPL48 WILD-TYPE 
               1               18 
      TCGA-FB-A4P5       TCGA-FB-A4P6       TCGA-FB-A5VM       TCGA-FB-A78T 
"MRPL48 WILD-TYPE" "MRPL48 WILD-TYPE" "MRPL48 WILD-TYPE" "MRPL48 WILD-TYPE" 
      TCGA-FB-A7DR       TCGA-H6-8124       TCGA-H8-A6C1       TCGA-IB-7644 
"MRPL48 WILD-TYPE" "MRPL48 WILD-TYPE" "MRPL48 WILD-TYPE" "MRPL48 WILD-TYPE" 
      TCGA-IB-7649       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7891 
"MRPL48 WILD-TYPE" "MRPL48 WILD-TYPE" "MRPL48 WILD-TYPE" "MRPL48 WILD-TYPE" 
      TCGA-IB-8126       TCGA-IB-8127       TCGA-IB-A5SS       TCGA-IB-A6UG 
"MRPL48 WILD-TYPE" "MRPL48 WILD-TYPE" "MRPL48 WILD-TYPE" "MRPL48 WILD-TYPE" 
      TCGA-LB-A7SX       TCGA-OE-A75W 
"MRPL48 WILD-TYPE" "MRPL48 WILD-TYPE" 
                  vv
clus               R0 R1 RX
  MRPL48 MUTATED    3  0  0
  MRPL48 WILD-TYPE 39 24  2
D401V11, multiclass
    clus
vv   MRPL48 MUTATED MRPL48 WILD-TYPE
  R0              3               39
  R1              0               24
  RX              0                2
D401V12, continuous

Clustering(402) Variable = EIF4H MUTATION ANALYSIS
D402V1, survival
                 sevent
clus2              0  1
  EIF4H MUTATED    1  2
  EIF4H WILD-TYPE 39 27
  EIF4H MUTATED EIF4H WILD-TYPE 
              3              66 
  EIF4H MUTATED EIF4H WILD-TYPE 
              2              27 
$`EIF4H MUTATED`
TCGA-F2-A44G TCGA-HZ-8001 TCGA-IB-7651 
        5.03         0.62        19.82 

$`EIF4H WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44H TCGA-FB-A4P5 
       10.98         9.70        11.84         7.10        19.27         0.13 
TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR TCGA-FZ-5920 
       11.93        12.66         2.47         0.03         5.46         2.01 
TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7289 
       36.20        20.81        12.89         7.66        13.02         7.89 
TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 
        0.92         0.66         0.13         0.26        12.13        11.87 
TCGA-HZ-7926 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 
        0.26         0.79         0.69         3.95         0.92         0.53 
TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK 
        0.16         2.99         0.76         0.95         6.38         1.51 
TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7652 
       11.41        49.38         4.77        21.90        15.35        15.65 
TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 
       27.98         4.04         3.62        43.79        15.81        19.66 
TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO 
       16.04         3.85        15.98         0.56        17.16        10.82 
TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX 
        9.86         7.20        15.12         0.26         1.35         4.18 
TCGA-OE-A75W TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
        3.62         8.12        13.68        16.80        14.14        18.67 

  EIF4H MUTATED EIF4H WILD-TYPE 
           0.62            0.03 
  EIF4H MUTATED EIF4H WILD-TYPE 
          19.82           49.38 
  EIF4H MUTATED EIF4H WILD-TYPE 
          5.030           7.775 
[1] "0.6 - 19.8 (5.0)" "0.0 - 49.4 (7.8)"
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"EIF4H WILD-TYPE" "EIF4H WILD-TYPE" "EIF4H WILD-TYPE" "EIF4H WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
  "EIF4H MUTATED" "EIF4H WILD-TYPE" "EIF4H WILD-TYPE" "EIF4H WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"EIF4H WILD-TYPE" "EIF4H WILD-TYPE" "EIF4H WILD-TYPE" "EIF4H WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"EIF4H WILD-TYPE" "EIF4H WILD-TYPE" "EIF4H WILD-TYPE" "EIF4H WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"EIF4H WILD-TYPE" "EIF4H WILD-TYPE" "EIF4H WILD-TYPE" "EIF4H WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"EIF4H WILD-TYPE" "EIF4H WILD-TYPE" "EIF4H WILD-TYPE" "EIF4H WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"EIF4H WILD-TYPE" "EIF4H WILD-TYPE"   "EIF4H MUTATED" "EIF4H WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"EIF4H WILD-TYPE" "EIF4H WILD-TYPE" "EIF4H WILD-TYPE" "EIF4H WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"EIF4H WILD-TYPE" "EIF4H WILD-TYPE" "EIF4H WILD-TYPE" "EIF4H WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"EIF4H WILD-TYPE" "EIF4H WILD-TYPE" "EIF4H WILD-TYPE" "EIF4H WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"EIF4H WILD-TYPE" "EIF4H WILD-TYPE" "EIF4H WILD-TYPE"   "EIF4H MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"EIF4H WILD-TYPE" "EIF4H WILD-TYPE" "EIF4H WILD-TYPE" "EIF4H WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"EIF4H WILD-TYPE" "EIF4H WILD-TYPE" "EIF4H WILD-TYPE" "EIF4H WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"EIF4H WILD-TYPE" "EIF4H WILD-TYPE" "EIF4H WILD-TYPE" "EIF4H WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"EIF4H WILD-TYPE" "EIF4H WILD-TYPE" "EIF4H WILD-TYPE" "EIF4H WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"EIF4H WILD-TYPE" "EIF4H WILD-TYPE" "EIF4H WILD-TYPE" "EIF4H WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"EIF4H WILD-TYPE" "EIF4H WILD-TYPE" "EIF4H WILD-TYPE" "EIF4H WILD-TYPE" 
     TCGA-US-A77J 
"EIF4H WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"EIF4H WILD-TYPE" "EIF4H WILD-TYPE" "EIF4H WILD-TYPE" "EIF4H WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
  "EIF4H MUTATED" "EIF4H WILD-TYPE" "EIF4H WILD-TYPE" "EIF4H WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"EIF4H WILD-TYPE" "EIF4H WILD-TYPE" "EIF4H WILD-TYPE" "EIF4H WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"EIF4H WILD-TYPE" "EIF4H WILD-TYPE" "EIF4H WILD-TYPE" "EIF4H WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"EIF4H WILD-TYPE" "EIF4H WILD-TYPE" "EIF4H WILD-TYPE" "EIF4H WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"EIF4H WILD-TYPE" "EIF4H WILD-TYPE" "EIF4H WILD-TYPE" "EIF4H WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"EIF4H WILD-TYPE" "EIF4H WILD-TYPE"   "EIF4H MUTATED" "EIF4H WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"EIF4H WILD-TYPE" "EIF4H WILD-TYPE" "EIF4H WILD-TYPE" "EIF4H WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"EIF4H WILD-TYPE" "EIF4H WILD-TYPE" "EIF4H WILD-TYPE" "EIF4H WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"EIF4H WILD-TYPE" "EIF4H WILD-TYPE" "EIF4H WILD-TYPE" "EIF4H WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"EIF4H WILD-TYPE" "EIF4H WILD-TYPE" "EIF4H WILD-TYPE"   "EIF4H MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"EIF4H WILD-TYPE" "EIF4H WILD-TYPE" "EIF4H WILD-TYPE" "EIF4H WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"EIF4H WILD-TYPE" "EIF4H WILD-TYPE" "EIF4H WILD-TYPE" "EIF4H WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"EIF4H WILD-TYPE" "EIF4H WILD-TYPE" "EIF4H WILD-TYPE" "EIF4H WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"EIF4H WILD-TYPE" "EIF4H WILD-TYPE" "EIF4H WILD-TYPE" "EIF4H WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"EIF4H WILD-TYPE" "EIF4H WILD-TYPE" "EIF4H WILD-TYPE" "EIF4H WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"EIF4H WILD-TYPE" "EIF4H WILD-TYPE" "EIF4H WILD-TYPE" "EIF4H WILD-TYPE" 
     TCGA-US-A77J 
"EIF4H WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"EIF4H WILD-TYPE" "EIF4H WILD-TYPE" "EIF4H WILD-TYPE" "EIF4H WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
  "EIF4H MUTATED" "EIF4H WILD-TYPE" "EIF4H WILD-TYPE" "EIF4H WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"EIF4H WILD-TYPE" "EIF4H WILD-TYPE" "EIF4H WILD-TYPE" "EIF4H WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"EIF4H WILD-TYPE" "EIF4H WILD-TYPE" "EIF4H WILD-TYPE" "EIF4H WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"EIF4H WILD-TYPE" "EIF4H WILD-TYPE" "EIF4H WILD-TYPE" "EIF4H WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"EIF4H WILD-TYPE" "EIF4H WILD-TYPE" "EIF4H WILD-TYPE" "EIF4H WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"EIF4H WILD-TYPE" "EIF4H WILD-TYPE"   "EIF4H MUTATED" "EIF4H WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"EIF4H WILD-TYPE" "EIF4H WILD-TYPE" "EIF4H WILD-TYPE" "EIF4H WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"EIF4H WILD-TYPE" "EIF4H WILD-TYPE" "EIF4H WILD-TYPE" "EIF4H WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"EIF4H WILD-TYPE" "EIF4H WILD-TYPE" "EIF4H WILD-TYPE" "EIF4H WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"EIF4H WILD-TYPE" "EIF4H WILD-TYPE" "EIF4H WILD-TYPE"   "EIF4H MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"EIF4H WILD-TYPE" "EIF4H WILD-TYPE" "EIF4H WILD-TYPE" "EIF4H WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"EIF4H WILD-TYPE" "EIF4H WILD-TYPE" "EIF4H WILD-TYPE" "EIF4H WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"EIF4H WILD-TYPE" "EIF4H WILD-TYPE" "EIF4H WILD-TYPE" "EIF4H WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"EIF4H WILD-TYPE" "EIF4H WILD-TYPE" "EIF4H WILD-TYPE" "EIF4H WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"EIF4H WILD-TYPE" "EIF4H WILD-TYPE" "EIF4H WILD-TYPE" "EIF4H WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"EIF4H WILD-TYPE" "EIF4H WILD-TYPE" "EIF4H WILD-TYPE" "EIF4H WILD-TYPE" 
     TCGA-US-A77J 
"EIF4H WILD-TYPE" 
[1] "hr=" "1.5"
D402V2, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  EIF4H MUTATED          0        0         0         2         1        0
  EIF4H WILD-TYPE        1        4        11        49         1        3
D402V3, multiclass
                 vv
clus              T1+T2 T3+T4
  EIF4H MUTATED       0     3
  EIF4H WILD-TYPE     6    63
D402V4, multiclass
       clus
vv      EIF4H MUTATED EIF4H WILD-TYPE
  T1+T2             0               6
  T3+T4             3              63
D402V5, binary
                 cls
clus               0  1
  EIF4H MUTATED    1  2
  EIF4H WILD-TYPE 16 52
[1] "tbl2"
                 cls
clus              [,1] [,2]
  EIF4H MUTATED      1    2
  EIF4H WILD-TYPE   16   52
   clus
vv  EIF4H MUTATED EIF4H WILD-TYPE
  0             1              16
  1             2              52
                 vv
clus              M0 M1 MX
  EIF4H MUTATED    2  0  1
  EIF4H WILD-TYPE 37  3 29
D402V6, multiclass
    clus
vv   EIF4H MUTATED EIF4H WILD-TYPE
  M0             2              37
  M1             0               3
  MX             1              29
D402V7, binary
                 cls
clus               0  1
  EIF4H MUTATED    2  1
  EIF4H WILD-TYPE 34 35
[1] "tbl2"
                 cls
clus              [,1] [,2]
  EIF4H MUTATED      2    1
  EIF4H WILD-TYPE   34   35
        clus
vv       EIF4H MUTATED EIF4H WILD-TYPE
  FEMALE             2              34
  MALE               1              35
                 vv
clus              PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  EIF4H MUTATED                                     3
  EIF4H WILD-TYPE                                  62
                 vv
clus              PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  EIF4H MUTATED                                       0
  EIF4H WILD-TYPE                                     4
                 vv
clus              PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  EIF4H MUTATED                                                  0
  EIF4H WILD-TYPE                                                2
D402V8, multiclass
                                                  clus
vv                                                 EIF4H MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                          3
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                        0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA             0
                                                  clus
vv                                                 EIF4H WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                           62
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                          4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA               2
D402V9, continuous
[1] "Remove cluster labels:" "EIF4H MUTATED"         
clus
  EIF4H MUTATED EIF4H WILD-TYPE 
              1              21 
     TCGA-F2-6880      TCGA-FB-A4P5      TCGA-FB-A4P6      TCGA-FB-A5VM 
"EIF4H WILD-TYPE" "EIF4H WILD-TYPE" "EIF4H WILD-TYPE" "EIF4H WILD-TYPE" 
     TCGA-FB-A78T      TCGA-FB-A7DR      TCGA-H6-8124      TCGA-H6-A45N 
"EIF4H WILD-TYPE" "EIF4H WILD-TYPE" "EIF4H WILD-TYPE" "EIF4H WILD-TYPE" 
     TCGA-H8-A6C1      TCGA-IB-7644      TCGA-IB-7649      TCGA-IB-7885 
"EIF4H WILD-TYPE" "EIF4H WILD-TYPE" "EIF4H WILD-TYPE" "EIF4H WILD-TYPE" 
     TCGA-IB-7886      TCGA-IB-7887      TCGA-IB-7891      TCGA-IB-8126 
"EIF4H WILD-TYPE" "EIF4H WILD-TYPE" "EIF4H WILD-TYPE" "EIF4H WILD-TYPE" 
     TCGA-IB-8127      TCGA-IB-A5SS      TCGA-IB-A6UG      TCGA-LB-A7SX 
"EIF4H WILD-TYPE" "EIF4H WILD-TYPE" "EIF4H WILD-TYPE" "EIF4H WILD-TYPE" 
     TCGA-OE-A75W 
"EIF4H WILD-TYPE" 
D402V10, continuous
[1] "Remove cluster labels:" "EIF4H MUTATED"         
clus
  EIF4H MUTATED EIF4H WILD-TYPE 
              1              18 
     TCGA-FB-A4P5      TCGA-FB-A4P6      TCGA-FB-A5VM      TCGA-FB-A78T 
"EIF4H WILD-TYPE" "EIF4H WILD-TYPE" "EIF4H WILD-TYPE" "EIF4H WILD-TYPE" 
     TCGA-FB-A7DR      TCGA-H6-8124      TCGA-H8-A6C1      TCGA-IB-7644 
"EIF4H WILD-TYPE" "EIF4H WILD-TYPE" "EIF4H WILD-TYPE" "EIF4H WILD-TYPE" 
     TCGA-IB-7649      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7891 
"EIF4H WILD-TYPE" "EIF4H WILD-TYPE" "EIF4H WILD-TYPE" "EIF4H WILD-TYPE" 
     TCGA-IB-8126      TCGA-IB-8127      TCGA-IB-A5SS      TCGA-IB-A6UG 
"EIF4H WILD-TYPE" "EIF4H WILD-TYPE" "EIF4H WILD-TYPE" "EIF4H WILD-TYPE" 
     TCGA-LB-A7SX      TCGA-OE-A75W 
"EIF4H WILD-TYPE" "EIF4H WILD-TYPE" 
                 vv
clus              R0 R1 RX
  EIF4H MUTATED    2  1  0
  EIF4H WILD-TYPE 40 23  2
D402V11, multiclass
    clus
vv   EIF4H MUTATED EIF4H WILD-TYPE
  R0             2              40
  R1             1              23
  RX             0               2
D402V12, continuous

Clustering(403) Variable = ZFHX3 MUTATION ANALYSIS
D403V1, survival
                 sevent
clus2              0  1
  ZFHX3 MUTATED    6  8
  ZFHX3 WILD-TYPE 34 21
  ZFHX3 MUTATED ZFHX3 WILD-TYPE 
             14              55 
  ZFHX3 MUTATED ZFHX3 WILD-TYPE 
              8              21 
$`ZFHX3 MUTATED`
TCGA-F2-6879 TCGA-FB-A78T TCGA-FZ-5923 TCGA-HZ-7923 TCGA-HZ-7925 TCGA-HZ-8001 
       10.98         0.03        20.81         0.26        11.87         0.62 
TCGA-HZ-8002 TCGA-HZ-8005 TCGA-IB-7644 TCGA-IB-7646 TCGA-IB-7651 TCGA-IB-7890 
        0.79         3.95        11.41         4.77        19.82        19.66 
TCGA-IB-7897 TCGA-IB-8127 
       15.98        17.16 

$`ZFHX3 WILD-TYPE`
TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H TCGA-FB-A4P5 
        9.70        11.84         7.10         5.03        19.27         0.13 
TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A7DR TCGA-FZ-5920 TCGA-FZ-5922 
       11.93        12.66         2.47         5.46         2.01        36.20 
TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-7919 
       12.89         7.66        13.02         7.89         0.92         0.66 
TCGA-HZ-7922 TCGA-HZ-7924 TCGA-HZ-7926 TCGA-HZ-8003 TCGA-HZ-8315 TCGA-HZ-8317 
        0.13        12.13         0.26         0.69         0.92         0.53 
TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK 
        0.16         2.99         0.76         0.95         6.38         1.51 
TCGA-IB-7645 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7886 
       49.38        21.90        15.35        15.65        27.98         4.04 
TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-8126 
        3.62        43.79        15.81        16.04         3.85         0.56 
TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG 
       10.82         9.86         7.20        15.12         0.26         1.35 
TCGA-LB-A7SX TCGA-OE-A75W TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E 
        4.18         3.62         8.12        13.68        16.80        14.14 
TCGA-US-A77J 
       18.67 

  ZFHX3 MUTATED ZFHX3 WILD-TYPE 
           0.03            0.13 
  ZFHX3 MUTATED ZFHX3 WILD-TYPE 
          20.81           49.38 
  ZFHX3 MUTATED ZFHX3 WILD-TYPE 
         11.195           7.200 
[1] "0.0 - 20.8 (11.2)" "0.1 - 49.4 (7.2)" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
  "ZFHX3 MUTATED" "ZFHX3 WILD-TYPE" "ZFHX3 WILD-TYPE" "ZFHX3 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"ZFHX3 WILD-TYPE" "ZFHX3 WILD-TYPE" "ZFHX3 WILD-TYPE" "ZFHX3 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"ZFHX3 WILD-TYPE" "ZFHX3 WILD-TYPE"   "ZFHX3 MUTATED" "ZFHX3 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"ZFHX3 WILD-TYPE" "ZFHX3 WILD-TYPE"   "ZFHX3 MUTATED" "ZFHX3 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"ZFHX3 WILD-TYPE" "ZFHX3 WILD-TYPE" "ZFHX3 WILD-TYPE" "ZFHX3 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"ZFHX3 WILD-TYPE" "ZFHX3 WILD-TYPE"   "ZFHX3 MUTATED" "ZFHX3 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
  "ZFHX3 MUTATED" "ZFHX3 WILD-TYPE"   "ZFHX3 MUTATED"   "ZFHX3 MUTATED" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"ZFHX3 WILD-TYPE"   "ZFHX3 MUTATED" "ZFHX3 WILD-TYPE" "ZFHX3 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"ZFHX3 WILD-TYPE" "ZFHX3 WILD-TYPE" "ZFHX3 WILD-TYPE" "ZFHX3 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"ZFHX3 WILD-TYPE" "ZFHX3 WILD-TYPE"   "ZFHX3 MUTATED" "ZFHX3 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
  "ZFHX3 MUTATED" "ZFHX3 WILD-TYPE" "ZFHX3 WILD-TYPE"   "ZFHX3 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"ZFHX3 WILD-TYPE" "ZFHX3 WILD-TYPE" "ZFHX3 WILD-TYPE" "ZFHX3 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"ZFHX3 WILD-TYPE" "ZFHX3 WILD-TYPE"   "ZFHX3 MUTATED" "ZFHX3 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"ZFHX3 WILD-TYPE"   "ZFHX3 MUTATED" "ZFHX3 WILD-TYPE"   "ZFHX3 MUTATED" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"ZFHX3 WILD-TYPE" "ZFHX3 WILD-TYPE" "ZFHX3 WILD-TYPE" "ZFHX3 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"ZFHX3 WILD-TYPE" "ZFHX3 WILD-TYPE" "ZFHX3 WILD-TYPE" "ZFHX3 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"ZFHX3 WILD-TYPE" "ZFHX3 WILD-TYPE" "ZFHX3 WILD-TYPE" "ZFHX3 WILD-TYPE" 
     TCGA-US-A77J 
"ZFHX3 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
  "ZFHX3 MUTATED" "ZFHX3 WILD-TYPE" "ZFHX3 WILD-TYPE" "ZFHX3 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"ZFHX3 WILD-TYPE" "ZFHX3 WILD-TYPE" "ZFHX3 WILD-TYPE" "ZFHX3 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"ZFHX3 WILD-TYPE" "ZFHX3 WILD-TYPE"   "ZFHX3 MUTATED" "ZFHX3 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"ZFHX3 WILD-TYPE" "ZFHX3 WILD-TYPE"   "ZFHX3 MUTATED" "ZFHX3 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"ZFHX3 WILD-TYPE" "ZFHX3 WILD-TYPE" "ZFHX3 WILD-TYPE" "ZFHX3 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"ZFHX3 WILD-TYPE" "ZFHX3 WILD-TYPE"   "ZFHX3 MUTATED" "ZFHX3 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
  "ZFHX3 MUTATED" "ZFHX3 WILD-TYPE"   "ZFHX3 MUTATED"   "ZFHX3 MUTATED" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"ZFHX3 WILD-TYPE"   "ZFHX3 MUTATED" "ZFHX3 WILD-TYPE" "ZFHX3 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"ZFHX3 WILD-TYPE" "ZFHX3 WILD-TYPE" "ZFHX3 WILD-TYPE" "ZFHX3 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"ZFHX3 WILD-TYPE" "ZFHX3 WILD-TYPE"   "ZFHX3 MUTATED" "ZFHX3 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
  "ZFHX3 MUTATED" "ZFHX3 WILD-TYPE" "ZFHX3 WILD-TYPE"   "ZFHX3 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"ZFHX3 WILD-TYPE" "ZFHX3 WILD-TYPE" "ZFHX3 WILD-TYPE" "ZFHX3 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"ZFHX3 WILD-TYPE" "ZFHX3 WILD-TYPE"   "ZFHX3 MUTATED" "ZFHX3 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"ZFHX3 WILD-TYPE"   "ZFHX3 MUTATED" "ZFHX3 WILD-TYPE"   "ZFHX3 MUTATED" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"ZFHX3 WILD-TYPE" "ZFHX3 WILD-TYPE" "ZFHX3 WILD-TYPE" "ZFHX3 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"ZFHX3 WILD-TYPE" "ZFHX3 WILD-TYPE" "ZFHX3 WILD-TYPE" "ZFHX3 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"ZFHX3 WILD-TYPE" "ZFHX3 WILD-TYPE" "ZFHX3 WILD-TYPE" "ZFHX3 WILD-TYPE" 
     TCGA-US-A77J 
"ZFHX3 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
  "ZFHX3 MUTATED" "ZFHX3 WILD-TYPE" "ZFHX3 WILD-TYPE" "ZFHX3 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"ZFHX3 WILD-TYPE" "ZFHX3 WILD-TYPE" "ZFHX3 WILD-TYPE" "ZFHX3 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"ZFHX3 WILD-TYPE" "ZFHX3 WILD-TYPE"   "ZFHX3 MUTATED" "ZFHX3 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"ZFHX3 WILD-TYPE" "ZFHX3 WILD-TYPE"   "ZFHX3 MUTATED" "ZFHX3 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"ZFHX3 WILD-TYPE" "ZFHX3 WILD-TYPE" "ZFHX3 WILD-TYPE" "ZFHX3 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"ZFHX3 WILD-TYPE" "ZFHX3 WILD-TYPE"   "ZFHX3 MUTATED" "ZFHX3 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
  "ZFHX3 MUTATED" "ZFHX3 WILD-TYPE"   "ZFHX3 MUTATED"   "ZFHX3 MUTATED" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"ZFHX3 WILD-TYPE"   "ZFHX3 MUTATED" "ZFHX3 WILD-TYPE" "ZFHX3 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"ZFHX3 WILD-TYPE" "ZFHX3 WILD-TYPE" "ZFHX3 WILD-TYPE" "ZFHX3 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"ZFHX3 WILD-TYPE" "ZFHX3 WILD-TYPE"   "ZFHX3 MUTATED" "ZFHX3 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
  "ZFHX3 MUTATED" "ZFHX3 WILD-TYPE" "ZFHX3 WILD-TYPE"   "ZFHX3 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"ZFHX3 WILD-TYPE" "ZFHX3 WILD-TYPE" "ZFHX3 WILD-TYPE" "ZFHX3 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"ZFHX3 WILD-TYPE" "ZFHX3 WILD-TYPE"   "ZFHX3 MUTATED" "ZFHX3 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"ZFHX3 WILD-TYPE"   "ZFHX3 MUTATED" "ZFHX3 WILD-TYPE"   "ZFHX3 MUTATED" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"ZFHX3 WILD-TYPE" "ZFHX3 WILD-TYPE" "ZFHX3 WILD-TYPE" "ZFHX3 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"ZFHX3 WILD-TYPE" "ZFHX3 WILD-TYPE" "ZFHX3 WILD-TYPE" "ZFHX3 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"ZFHX3 WILD-TYPE" "ZFHX3 WILD-TYPE" "ZFHX3 WILD-TYPE" "ZFHX3 WILD-TYPE" 
     TCGA-US-A77J 
"ZFHX3 WILD-TYPE" 
[1] "hr=" "1.4"
D403V2, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  ZFHX3 MUTATED          0        1         1        10         1        2
  ZFHX3 WILD-TYPE        1        3        10        41         1        1
D403V3, multiclass
                 vv
clus              T1+T2 T3+T4
  ZFHX3 MUTATED       1    14
  ZFHX3 WILD-TYPE     5    52
D403V4, multiclass
       clus
vv      ZFHX3 MUTATED ZFHX3 WILD-TYPE
  T1+T2             1               5
  T3+T4            14              52
D403V5, binary
                 cls
clus               0  1
  ZFHX3 MUTATED    3 12
  ZFHX3 WILD-TYPE 14 42
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ZFHX3 MUTATED      3   12
  ZFHX3 WILD-TYPE   14   42
   clus
vv  ZFHX3 MUTATED ZFHX3 WILD-TYPE
  0             3              14
  1            12              42
                 vv
clus              M0 M1 MX
  ZFHX3 MUTATED    7  2  6
  ZFHX3 WILD-TYPE 32  1 24
D403V6, multiclass
    clus
vv   ZFHX3 MUTATED ZFHX3 WILD-TYPE
  M0             7              32
  M1             2               1
  MX             6              24
D403V7, binary
                 cls
clus               0  1
  ZFHX3 MUTATED    4 11
  ZFHX3 WILD-TYPE 32 25
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ZFHX3 MUTATED      4   11
  ZFHX3 WILD-TYPE   32   25
        clus
vv       ZFHX3 MUTATED ZFHX3 WILD-TYPE
  FEMALE             4              32
  MALE              11              25
                 vv
clus              PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  ZFHX3 MUTATED                                    14
  ZFHX3 WILD-TYPE                                  51
                 vv
clus              PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  ZFHX3 MUTATED                                       0
  ZFHX3 WILD-TYPE                                     4
                 vv
clus              PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  ZFHX3 MUTATED                                                  0
  ZFHX3 WILD-TYPE                                                2
D403V8, multiclass
                                                  clus
vv                                                 ZFHX3 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                         14
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                        0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA             0
                                                  clus
vv                                                 ZFHX3 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                           51
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                          4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA               2
D403V9, continuous
D403V10, continuous
                 vv
clus              R0 R1 RX
  ZFHX3 MUTATED   10  5  0
  ZFHX3 WILD-TYPE 32 19  2
D403V11, multiclass
    clus
vv   ZFHX3 MUTATED ZFHX3 WILD-TYPE
  R0            10              32
  R1             5              19
  RX             0               2
D403V12, continuous

Clustering(404) Variable = VEZF1 MUTATION ANALYSIS
D404V1, survival
                 sevent
clus2              0  1
  VEZF1 MUTATED    1  2
  VEZF1 WILD-TYPE 39 27
  VEZF1 MUTATED VEZF1 WILD-TYPE 
              3              66 
  VEZF1 MUTATED VEZF1 WILD-TYPE 
              2              27 
$`VEZF1 MUTATED`
TCGA-HZ-8636 TCGA-IB-7651 TCGA-IB-7897 
        0.16        19.82        15.98 

$`VEZF1 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P5 TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR 
        0.13        11.93        12.66         2.47         0.03         5.46 
TCGA-FZ-5920 TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 
        2.01        36.20        20.81        12.89         7.66        13.02 
TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 
        7.89         0.92         0.66         0.13         0.26        12.13 
TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 
       11.87         0.26         0.62         0.79         0.69         3.95 
TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH 
        0.92         0.53         2.99         0.76         0.95         6.38 
TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 
        1.51        11.41        49.38         4.77        21.90        15.35 
TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 
       15.65        27.98         4.04         3.62        43.79        15.81 
TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO 
       19.66        16.04         3.85         0.56        17.16        10.82 
TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX 
        9.86         7.20        15.12         0.26         1.35         4.18 
TCGA-OE-A75W TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
        3.62         8.12        13.68        16.80        14.14        18.67 

  VEZF1 MUTATED VEZF1 WILD-TYPE 
           0.16            0.03 
  VEZF1 MUTATED VEZF1 WILD-TYPE 
          19.82           49.38 
  VEZF1 MUTATED VEZF1 WILD-TYPE 
          15.98            7.43 
[1] "0.2 - 19.8 (16.0)" "0.0 - 49.4 (7.4)" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
  "VEZF1 MUTATED" "VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE"   "VEZF1 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"VEZF1 WILD-TYPE"   "VEZF1 MUTATED" "VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" 
     TCGA-US-A77J 
"VEZF1 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
  "VEZF1 MUTATED" "VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE"   "VEZF1 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"VEZF1 WILD-TYPE"   "VEZF1 MUTATED" "VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" 
     TCGA-US-A77J 
"VEZF1 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
  "VEZF1 MUTATED" "VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE"   "VEZF1 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"VEZF1 WILD-TYPE"   "VEZF1 MUTATED" "VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" 
     TCGA-US-A77J 
"VEZF1 WILD-TYPE" 
[1] "hr=" "1.1"
D404V2, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  VEZF1 MUTATED          0        0         0         2         0        1
  VEZF1 WILD-TYPE        1        4        11        49         2        2
D404V3, multiclass
                 vv
clus              T1+T2 T3+T4
  VEZF1 MUTATED       0     3
  VEZF1 WILD-TYPE     6    63
D404V4, multiclass
       clus
vv      VEZF1 MUTATED VEZF1 WILD-TYPE
  T1+T2             0               6
  T3+T4             3              63
D404V5, binary
                 cls
clus               0  1
  VEZF1 MUTATED    1  2
  VEZF1 WILD-TYPE 16 52
[1] "tbl2"
                 cls
clus              [,1] [,2]
  VEZF1 MUTATED      1    2
  VEZF1 WILD-TYPE   16   52
   clus
vv  VEZF1 MUTATED VEZF1 WILD-TYPE
  0             1              16
  1             2              52
                 vv
clus              M0 M1 MX
  VEZF1 MUTATED    2  1  0
  VEZF1 WILD-TYPE 37  2 30
D404V6, multiclass
    clus
vv   VEZF1 MUTATED VEZF1 WILD-TYPE
  M0             2              37
  M1             1               2
  MX             0              30
D404V7, binary
                 cls
clus               0  1
  VEZF1 MUTATED    3  0
  VEZF1 WILD-TYPE 33 36
[1] "tbl2"
                 cls
clus              [,1] [,2]
  VEZF1 MUTATED      3    0
  VEZF1 WILD-TYPE   33   36
        clus
vv       VEZF1 MUTATED VEZF1 WILD-TYPE
  FEMALE             3              33
  MALE               0              36
                 vv
clus              PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  VEZF1 MUTATED                                     3
  VEZF1 WILD-TYPE                                  62
                 vv
clus              PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  VEZF1 MUTATED                                       0
  VEZF1 WILD-TYPE                                     4
                 vv
clus              PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  VEZF1 MUTATED                                                  0
  VEZF1 WILD-TYPE                                                2
D404V8, multiclass
                                                  clus
vv                                                 VEZF1 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                          3
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                        0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA             0
                                                  clus
vv                                                 VEZF1 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                           62
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                          4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA               2
D404V9, continuous
[1] "Remove cluster labels:" "VEZF1 MUTATED"         
clus
  VEZF1 MUTATED VEZF1 WILD-TYPE 
              1              21 
     TCGA-F2-6880      TCGA-FB-A4P5      TCGA-FB-A4P6      TCGA-FB-A5VM 
"VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" 
     TCGA-FB-A78T      TCGA-FB-A7DR      TCGA-H6-8124      TCGA-H6-A45N 
"VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" 
     TCGA-H8-A6C1      TCGA-IB-7644      TCGA-IB-7649      TCGA-IB-7885 
"VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" 
     TCGA-IB-7886      TCGA-IB-7887      TCGA-IB-7891      TCGA-IB-8126 
"VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" 
     TCGA-IB-8127      TCGA-IB-A5SS      TCGA-IB-A6UG      TCGA-LB-A7SX 
"VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" 
     TCGA-OE-A75W 
"VEZF1 WILD-TYPE" 
D404V10, continuous
[1] "Remove cluster labels:" "VEZF1 MUTATED"         
clus
  VEZF1 MUTATED VEZF1 WILD-TYPE 
              1              18 
     TCGA-FB-A4P5      TCGA-FB-A4P6      TCGA-FB-A5VM      TCGA-FB-A78T 
"VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" 
     TCGA-FB-A7DR      TCGA-H6-8124      TCGA-H8-A6C1      TCGA-IB-7644 
"VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" 
     TCGA-IB-7649      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7891 
"VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" 
     TCGA-IB-8126      TCGA-IB-8127      TCGA-IB-A5SS      TCGA-IB-A6UG 
"VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" 
     TCGA-LB-A7SX      TCGA-OE-A75W 
"VEZF1 WILD-TYPE" "VEZF1 WILD-TYPE" 
                 vv
clus              R0 R1 RX
  VEZF1 MUTATED    2  1  0
  VEZF1 WILD-TYPE 40 23  2
D404V11, multiclass
    clus
vv   VEZF1 MUTATED VEZF1 WILD-TYPE
  R0             2              40
  R1             1              23
  RX             0               2
D404V12, continuous

Clustering(405) Variable = CCDC151 MUTATION ANALYSIS
D405V1, survival
                   sevent
clus2                0  1
  CCDC151 MUTATED    2  3
  CCDC151 WILD-TYPE 38 26
  CCDC151 MUTATED CCDC151 WILD-TYPE 
                5                64 
  CCDC151 MUTATED CCDC151 WILD-TYPE 
                3                26 
$`CCDC151 MUTATED`
TCGA-F2-A44H TCGA-HZ-8005 TCGA-HZ-8317 TCGA-IB-7651 TCGA-IB-7890 
       19.27         3.95         0.53        19.82        19.66 

$`CCDC151 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-FB-A4P5 
       10.98         9.70        11.84         7.10         5.03         0.13 
TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR TCGA-FZ-5920 
       11.93        12.66         2.47         0.03         5.46         2.01 
TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7289 
       36.20        20.81        12.89         7.66        13.02         7.89 
TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 
        0.92         0.66         0.13         0.26        12.13        11.87 
TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8315 TCGA-HZ-8636 
        0.26         0.62         0.79         0.69         0.92         0.16 
TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 
        2.99         0.76         0.95         6.38         1.51        11.41 
TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7652 TCGA-IB-7885 
       49.38         4.77        21.90        15.35        15.65        27.98 
TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7891 TCGA-IB-7893 
        4.04         3.62        43.79        15.81        16.04         3.85 
TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ 
       15.98         0.56        17.16        10.82         9.86         7.20 
TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W TCGA-PZ-A5RE 
       15.12         0.26         1.35         4.18         3.62         8.12 
TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
       13.68        16.80        14.14        18.67 

  CCDC151 MUTATED CCDC151 WILD-TYPE 
             0.53              0.03 
  CCDC151 MUTATED CCDC151 WILD-TYPE 
            19.82             49.38 
  CCDC151 MUTATED CCDC151 WILD-TYPE 
            19.27              7.43 
[1] "0.5 - 19.8 (19.3)" "0.0 - 49.4 (7.4)" 
       TCGA-F2-6879        TCGA-F2-6880        TCGA-F2-7273        TCGA-F2-7276 
"CCDC151 WILD-TYPE" "CCDC151 WILD-TYPE" "CCDC151 WILD-TYPE" "CCDC151 WILD-TYPE" 
       TCGA-F2-A44G        TCGA-F2-A44H        TCGA-FB-A4P5        TCGA-FB-A4P6 
"CCDC151 WILD-TYPE"   "CCDC151 MUTATED" "CCDC151 WILD-TYPE" "CCDC151 WILD-TYPE" 
       TCGA-FB-A545        TCGA-FB-A5VM        TCGA-FB-A78T        TCGA-FB-A7DR 
"CCDC151 WILD-TYPE" "CCDC151 WILD-TYPE" "CCDC151 WILD-TYPE" "CCDC151 WILD-TYPE" 
       TCGA-FZ-5920        TCGA-FZ-5922        TCGA-FZ-5923        TCGA-H6-8124 
"CCDC151 WILD-TYPE" "CCDC151 WILD-TYPE" "CCDC151 WILD-TYPE" "CCDC151 WILD-TYPE" 
       TCGA-H6-A45N        TCGA-H8-A6C1        TCGA-HZ-7289        TCGA-HZ-7918 
"CCDC151 WILD-TYPE" "CCDC151 WILD-TYPE" "CCDC151 WILD-TYPE" "CCDC151 WILD-TYPE" 
       TCGA-HZ-7919        TCGA-HZ-7922        TCGA-HZ-7923        TCGA-HZ-7924 
"CCDC151 WILD-TYPE" "CCDC151 WILD-TYPE" "CCDC151 WILD-TYPE" "CCDC151 WILD-TYPE" 
       TCGA-HZ-7925        TCGA-HZ-7926        TCGA-HZ-8001        TCGA-HZ-8002 
"CCDC151 WILD-TYPE" "CCDC151 WILD-TYPE" "CCDC151 WILD-TYPE" "CCDC151 WILD-TYPE" 
       TCGA-HZ-8003        TCGA-HZ-8005        TCGA-HZ-8315        TCGA-HZ-8317 
"CCDC151 WILD-TYPE"   "CCDC151 MUTATED" "CCDC151 WILD-TYPE"   "CCDC151 MUTATED" 
       TCGA-HZ-8636        TCGA-HZ-8638        TCGA-HZ-A49G        TCGA-HZ-A49H 
"CCDC151 WILD-TYPE" "CCDC151 WILD-TYPE" "CCDC151 WILD-TYPE" "CCDC151 WILD-TYPE" 
       TCGA-HZ-A4BH        TCGA-HZ-A4BK        TCGA-IB-7644        TCGA-IB-7645 
"CCDC151 WILD-TYPE" "CCDC151 WILD-TYPE" "CCDC151 WILD-TYPE" "CCDC151 WILD-TYPE" 
       TCGA-IB-7646        TCGA-IB-7647        TCGA-IB-7649        TCGA-IB-7651 
"CCDC151 WILD-TYPE" "CCDC151 WILD-TYPE" "CCDC151 WILD-TYPE"   "CCDC151 MUTATED" 
       TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-7886        TCGA-IB-7887 
"CCDC151 WILD-TYPE" "CCDC151 WILD-TYPE" "CCDC151 WILD-TYPE" "CCDC151 WILD-TYPE" 
       TCGA-IB-7888        TCGA-IB-7889        TCGA-IB-7890        TCGA-IB-7891 
"CCDC151 WILD-TYPE" "CCDC151 WILD-TYPE"   "CCDC151 MUTATED" "CCDC151 WILD-TYPE" 
       TCGA-IB-7893        TCGA-IB-7897        TCGA-IB-8126        TCGA-IB-8127 
"CCDC151 WILD-TYPE" "CCDC151 WILD-TYPE" "CCDC151 WILD-TYPE" "CCDC151 WILD-TYPE" 
       TCGA-IB-A5SO        TCGA-IB-A5SP        TCGA-IB-A5SQ        TCGA-IB-A5SS 
"CCDC151 WILD-TYPE" "CCDC151 WILD-TYPE" "CCDC151 WILD-TYPE" "CCDC151 WILD-TYPE" 
       TCGA-IB-A5ST        TCGA-IB-A6UG        TCGA-LB-A7SX        TCGA-OE-A75W 
"CCDC151 WILD-TYPE" "CCDC151 WILD-TYPE" "CCDC151 WILD-TYPE" "CCDC151 WILD-TYPE" 
       TCGA-PZ-A5RE        TCGA-Q3-A5QY        TCGA-US-A779        TCGA-US-A77E 
"CCDC151 WILD-TYPE" "CCDC151 WILD-TYPE" "CCDC151 WILD-TYPE" "CCDC151 WILD-TYPE" 
       TCGA-US-A77J 
"CCDC151 WILD-TYPE" 
       TCGA-F2-6879        TCGA-F2-6880        TCGA-F2-7273        TCGA-F2-7276 
"CCDC151 WILD-TYPE" "CCDC151 WILD-TYPE" "CCDC151 WILD-TYPE" "CCDC151 WILD-TYPE" 
       TCGA-F2-A44G        TCGA-F2-A44H        TCGA-FB-A4P5        TCGA-FB-A4P6 
"CCDC151 WILD-TYPE"   "CCDC151 MUTATED" "CCDC151 WILD-TYPE" "CCDC151 WILD-TYPE" 
       TCGA-FB-A545        TCGA-FB-A5VM        TCGA-FB-A78T        TCGA-FB-A7DR 
"CCDC151 WILD-TYPE" "CCDC151 WILD-TYPE" "CCDC151 WILD-TYPE" "CCDC151 WILD-TYPE" 
       TCGA-FZ-5920        TCGA-FZ-5922        TCGA-FZ-5923        TCGA-H6-8124 
"CCDC151 WILD-TYPE" "CCDC151 WILD-TYPE" "CCDC151 WILD-TYPE" "CCDC151 WILD-TYPE" 
       TCGA-H6-A45N        TCGA-H8-A6C1        TCGA-HZ-7289        TCGA-HZ-7918 
"CCDC151 WILD-TYPE" "CCDC151 WILD-TYPE" "CCDC151 WILD-TYPE" "CCDC151 WILD-TYPE" 
       TCGA-HZ-7919        TCGA-HZ-7922        TCGA-HZ-7923        TCGA-HZ-7924 
"CCDC151 WILD-TYPE" "CCDC151 WILD-TYPE" "CCDC151 WILD-TYPE" "CCDC151 WILD-TYPE" 
       TCGA-HZ-7925        TCGA-HZ-7926        TCGA-HZ-8001        TCGA-HZ-8002 
"CCDC151 WILD-TYPE" "CCDC151 WILD-TYPE" "CCDC151 WILD-TYPE" "CCDC151 WILD-TYPE" 
       TCGA-HZ-8003        TCGA-HZ-8005        TCGA-HZ-8315        TCGA-HZ-8317 
"CCDC151 WILD-TYPE"   "CCDC151 MUTATED" "CCDC151 WILD-TYPE"   "CCDC151 MUTATED" 
       TCGA-HZ-8636        TCGA-HZ-8638        TCGA-HZ-A49G        TCGA-HZ-A49H 
"CCDC151 WILD-TYPE" "CCDC151 WILD-TYPE" "CCDC151 WILD-TYPE" "CCDC151 WILD-TYPE" 
       TCGA-HZ-A4BH        TCGA-HZ-A4BK        TCGA-IB-7644        TCGA-IB-7645 
"CCDC151 WILD-TYPE" "CCDC151 WILD-TYPE" "CCDC151 WILD-TYPE" "CCDC151 WILD-TYPE" 
       TCGA-IB-7646        TCGA-IB-7647        TCGA-IB-7649        TCGA-IB-7651 
"CCDC151 WILD-TYPE" "CCDC151 WILD-TYPE" "CCDC151 WILD-TYPE"   "CCDC151 MUTATED" 
       TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-7886        TCGA-IB-7887 
"CCDC151 WILD-TYPE" "CCDC151 WILD-TYPE" "CCDC151 WILD-TYPE" "CCDC151 WILD-TYPE" 
       TCGA-IB-7888        TCGA-IB-7889        TCGA-IB-7890        TCGA-IB-7891 
"CCDC151 WILD-TYPE" "CCDC151 WILD-TYPE"   "CCDC151 MUTATED" "CCDC151 WILD-TYPE" 
       TCGA-IB-7893        TCGA-IB-7897        TCGA-IB-8126        TCGA-IB-8127 
"CCDC151 WILD-TYPE" "CCDC151 WILD-TYPE" "CCDC151 WILD-TYPE" "CCDC151 WILD-TYPE" 
       TCGA-IB-A5SO        TCGA-IB-A5SP        TCGA-IB-A5SQ        TCGA-IB-A5SS 
"CCDC151 WILD-TYPE" "CCDC151 WILD-TYPE" "CCDC151 WILD-TYPE" "CCDC151 WILD-TYPE" 
       TCGA-IB-A5ST        TCGA-IB-A6UG        TCGA-LB-A7SX        TCGA-OE-A75W 
"CCDC151 WILD-TYPE" "CCDC151 WILD-TYPE" "CCDC151 WILD-TYPE" "CCDC151 WILD-TYPE" 
       TCGA-PZ-A5RE        TCGA-Q3-A5QY        TCGA-US-A779        TCGA-US-A77E 
"CCDC151 WILD-TYPE" "CCDC151 WILD-TYPE" "CCDC151 WILD-TYPE" "CCDC151 WILD-TYPE" 
       TCGA-US-A77J 
"CCDC151 WILD-TYPE" 
       TCGA-F2-6879        TCGA-F2-6880        TCGA-F2-7273        TCGA-F2-7276 
"CCDC151 WILD-TYPE" "CCDC151 WILD-TYPE" "CCDC151 WILD-TYPE" "CCDC151 WILD-TYPE" 
       TCGA-F2-A44G        TCGA-F2-A44H        TCGA-FB-A4P5        TCGA-FB-A4P6 
"CCDC151 WILD-TYPE"   "CCDC151 MUTATED" "CCDC151 WILD-TYPE" "CCDC151 WILD-TYPE" 
       TCGA-FB-A545        TCGA-FB-A5VM        TCGA-FB-A78T        TCGA-FB-A7DR 
"CCDC151 WILD-TYPE" "CCDC151 WILD-TYPE" "CCDC151 WILD-TYPE" "CCDC151 WILD-TYPE" 
       TCGA-FZ-5920        TCGA-FZ-5922        TCGA-FZ-5923        TCGA-H6-8124 
"CCDC151 WILD-TYPE" "CCDC151 WILD-TYPE" "CCDC151 WILD-TYPE" "CCDC151 WILD-TYPE" 
       TCGA-H6-A45N        TCGA-H8-A6C1        TCGA-HZ-7289        TCGA-HZ-7918 
"CCDC151 WILD-TYPE" "CCDC151 WILD-TYPE" "CCDC151 WILD-TYPE" "CCDC151 WILD-TYPE" 
       TCGA-HZ-7919        TCGA-HZ-7922        TCGA-HZ-7923        TCGA-HZ-7924 
"CCDC151 WILD-TYPE" "CCDC151 WILD-TYPE" "CCDC151 WILD-TYPE" "CCDC151 WILD-TYPE" 
       TCGA-HZ-7925        TCGA-HZ-7926        TCGA-HZ-8001        TCGA-HZ-8002 
"CCDC151 WILD-TYPE" "CCDC151 WILD-TYPE" "CCDC151 WILD-TYPE" "CCDC151 WILD-TYPE" 
       TCGA-HZ-8003        TCGA-HZ-8005        TCGA-HZ-8315        TCGA-HZ-8317 
"CCDC151 WILD-TYPE"   "CCDC151 MUTATED" "CCDC151 WILD-TYPE"   "CCDC151 MUTATED" 
       TCGA-HZ-8636        TCGA-HZ-8638        TCGA-HZ-A49G        TCGA-HZ-A49H 
"CCDC151 WILD-TYPE" "CCDC151 WILD-TYPE" "CCDC151 WILD-TYPE" "CCDC151 WILD-TYPE" 
       TCGA-HZ-A4BH        TCGA-HZ-A4BK        TCGA-IB-7644        TCGA-IB-7645 
"CCDC151 WILD-TYPE" "CCDC151 WILD-TYPE" "CCDC151 WILD-TYPE" "CCDC151 WILD-TYPE" 
       TCGA-IB-7646        TCGA-IB-7647        TCGA-IB-7649        TCGA-IB-7651 
"CCDC151 WILD-TYPE" "CCDC151 WILD-TYPE" "CCDC151 WILD-TYPE"   "CCDC151 MUTATED" 
       TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-7886        TCGA-IB-7887 
"CCDC151 WILD-TYPE" "CCDC151 WILD-TYPE" "CCDC151 WILD-TYPE" "CCDC151 WILD-TYPE" 
       TCGA-IB-7888        TCGA-IB-7889        TCGA-IB-7890        TCGA-IB-7891 
"CCDC151 WILD-TYPE" "CCDC151 WILD-TYPE"   "CCDC151 MUTATED" "CCDC151 WILD-TYPE" 
       TCGA-IB-7893        TCGA-IB-7897        TCGA-IB-8126        TCGA-IB-8127 
"CCDC151 WILD-TYPE" "CCDC151 WILD-TYPE" "CCDC151 WILD-TYPE" "CCDC151 WILD-TYPE" 
       TCGA-IB-A5SO        TCGA-IB-A5SP        TCGA-IB-A5SQ        TCGA-IB-A5SS 
"CCDC151 WILD-TYPE" "CCDC151 WILD-TYPE" "CCDC151 WILD-TYPE" "CCDC151 WILD-TYPE" 
       TCGA-IB-A5ST        TCGA-IB-A6UG        TCGA-LB-A7SX        TCGA-OE-A75W 
"CCDC151 WILD-TYPE" "CCDC151 WILD-TYPE" "CCDC151 WILD-TYPE" "CCDC151 WILD-TYPE" 
       TCGA-PZ-A5RE        TCGA-Q3-A5QY        TCGA-US-A779        TCGA-US-A77E 
"CCDC151 WILD-TYPE" "CCDC151 WILD-TYPE" "CCDC151 WILD-TYPE" "CCDC151 WILD-TYPE" 
       TCGA-US-A77J 
"CCDC151 WILD-TYPE" 
[1] "hr=" "1.1"
D405V2, continuous
                   vv
clus                STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  CCDC151 MUTATED          0        1         1         3         0        0
  CCDC151 WILD-TYPE        1        3        10        48         2        3
D405V3, multiclass
                   vv
clus                T1+T2 T3+T4
  CCDC151 MUTATED       1     4
  CCDC151 WILD-TYPE     5    62
D405V4, multiclass
       clus
vv      CCDC151 MUTATED CCDC151 WILD-TYPE
  T1+T2               1                 5
  T3+T4               4                62
D405V5, binary
                   cls
clus                 0  1
  CCDC151 MUTATED    2  3
  CCDC151 WILD-TYPE 15 51
[1] "tbl2"
                   cls
clus                [,1] [,2]
  CCDC151 MUTATED      2    3
  CCDC151 WILD-TYPE   15   51
   clus
vv  CCDC151 MUTATED CCDC151 WILD-TYPE
  0               2                15
  1               3                51
                   vv
clus                M0 M1 MX
  CCDC151 MUTATED    3  0  2
  CCDC151 WILD-TYPE 36  3 28
D405V6, multiclass
    clus
vv   CCDC151 MUTATED CCDC151 WILD-TYPE
  M0               3                36
  M1               0                 3
  MX               2                28
D405V7, binary
                   cls
clus                 0  1
  CCDC151 MUTATED    2  3
  CCDC151 WILD-TYPE 34 33
[1] "tbl2"
                   cls
clus                [,1] [,2]
  CCDC151 MUTATED      2    3
  CCDC151 WILD-TYPE   34   33
        clus
vv       CCDC151 MUTATED CCDC151 WILD-TYPE
  FEMALE               2                34
  MALE                 3                33
                   vv
clus                PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  CCDC151 MUTATED                                     5
  CCDC151 WILD-TYPE                                  60
                   vv
clus                PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  CCDC151 MUTATED                                       0
  CCDC151 WILD-TYPE                                     4
                   vv
clus                PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  CCDC151 MUTATED                                                  0
  CCDC151 WILD-TYPE                                                2
D405V8, multiclass
                                                  clus
vv                                                 CCDC151 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                            5
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                          0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA               0
                                                  clus
vv                                                 CCDC151 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                             60
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                            4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                 2
D405V9, continuous
[1] "Remove cluster labels:" "CCDC151 MUTATED"       
clus
  CCDC151 MUTATED CCDC151 WILD-TYPE 
                1                21 
       TCGA-F2-6880        TCGA-FB-A4P5        TCGA-FB-A4P6        TCGA-FB-A5VM 
"CCDC151 WILD-TYPE" "CCDC151 WILD-TYPE" "CCDC151 WILD-TYPE" "CCDC151 WILD-TYPE" 
       TCGA-FB-A78T        TCGA-FB-A7DR        TCGA-H6-8124        TCGA-H6-A45N 
"CCDC151 WILD-TYPE" "CCDC151 WILD-TYPE" "CCDC151 WILD-TYPE" "CCDC151 WILD-TYPE" 
       TCGA-H8-A6C1        TCGA-IB-7644        TCGA-IB-7649        TCGA-IB-7885 
"CCDC151 WILD-TYPE" "CCDC151 WILD-TYPE" "CCDC151 WILD-TYPE" "CCDC151 WILD-TYPE" 
       TCGA-IB-7886        TCGA-IB-7887        TCGA-IB-7891        TCGA-IB-8126 
"CCDC151 WILD-TYPE" "CCDC151 WILD-TYPE" "CCDC151 WILD-TYPE" "CCDC151 WILD-TYPE" 
       TCGA-IB-8127        TCGA-IB-A5SS        TCGA-IB-A6UG        TCGA-LB-A7SX 
"CCDC151 WILD-TYPE" "CCDC151 WILD-TYPE" "CCDC151 WILD-TYPE" "CCDC151 WILD-TYPE" 
       TCGA-OE-A75W 
"CCDC151 WILD-TYPE" 
D405V10, continuous
[1] "Remove cluster labels:" "CCDC151 MUTATED"       
clus
  CCDC151 MUTATED CCDC151 WILD-TYPE 
                1                18 
       TCGA-FB-A4P5        TCGA-FB-A4P6        TCGA-FB-A5VM        TCGA-FB-A78T 
"CCDC151 WILD-TYPE" "CCDC151 WILD-TYPE" "CCDC151 WILD-TYPE" "CCDC151 WILD-TYPE" 
       TCGA-FB-A7DR        TCGA-H6-8124        TCGA-H8-A6C1        TCGA-IB-7644 
"CCDC151 WILD-TYPE" "CCDC151 WILD-TYPE" "CCDC151 WILD-TYPE" "CCDC151 WILD-TYPE" 
       TCGA-IB-7649        TCGA-IB-7885        TCGA-IB-7886        TCGA-IB-7891 
"CCDC151 WILD-TYPE" "CCDC151 WILD-TYPE" "CCDC151 WILD-TYPE" "CCDC151 WILD-TYPE" 
       TCGA-IB-8126        TCGA-IB-8127        TCGA-IB-A5SS        TCGA-IB-A6UG 
"CCDC151 WILD-TYPE" "CCDC151 WILD-TYPE" "CCDC151 WILD-TYPE" "CCDC151 WILD-TYPE" 
       TCGA-LB-A7SX        TCGA-OE-A75W 
"CCDC151 WILD-TYPE" "CCDC151 WILD-TYPE" 
                   vv
clus                R0 R1 RX
  CCDC151 MUTATED    3  2  0
  CCDC151 WILD-TYPE 39 22  2
D405V11, multiclass
    clus
vv   CCDC151 MUTATED CCDC151 WILD-TYPE
  R0               3                39
  R1               2                22
  RX               0                 2
D405V12, continuous

Clustering(406) Variable = CR2 MUTATION ANALYSIS
D406V1, survival
               sevent
clus2            0  1
  CR2 MUTATED    2  3
  CR2 WILD-TYPE 38 26
  CR2 MUTATED CR2 WILD-TYPE 
            5            64 
  CR2 MUTATED CR2 WILD-TYPE 
            3            26 
$`CR2 MUTATED`
TCGA-F2-A44G TCGA-FB-A78T TCGA-HZ-8003 TCGA-IB-7651 TCGA-IB-7888 
        5.03         0.03         0.69        19.82        43.79 

$`CR2 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44H TCGA-FB-A4P5 
       10.98         9.70        11.84         7.10        19.27         0.13 
TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A7DR TCGA-FZ-5920 TCGA-FZ-5922 
       11.93        12.66         2.47         5.46         2.01        36.20 
TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7289 TCGA-HZ-7918 
       20.81        12.89         7.66        13.02         7.89         0.92 
TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 
        0.66         0.13         0.26        12.13        11.87         0.26 
TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8636 
        0.62         0.79         3.95         0.92         0.53         0.16 
TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 
        2.99         0.76         0.95         6.38         1.51        11.41 
TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7652 TCGA-IB-7885 
       49.38         4.77        21.90        15.35        15.65        27.98 
TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-7893 
        4.04         3.62        15.81        19.66        16.04         3.85 
TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ 
       15.98         0.56        17.16        10.82         9.86         7.20 
TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W TCGA-PZ-A5RE 
       15.12         0.26         1.35         4.18         3.62         8.12 
TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
       13.68        16.80        14.14        18.67 

  CR2 MUTATED CR2 WILD-TYPE 
         0.03          0.13 
  CR2 MUTATED CR2 WILD-TYPE 
        43.79         49.38 
  CR2 MUTATED CR2 WILD-TYPE 
        5.030         7.775 
[1] "0.0 - 43.8 (5.0)" "0.1 - 49.4 (7.8)"
   TCGA-F2-6879    TCGA-F2-6880    TCGA-F2-7273    TCGA-F2-7276    TCGA-F2-A44G 
"CR2 WILD-TYPE" "CR2 WILD-TYPE" "CR2 WILD-TYPE" "CR2 WILD-TYPE"   "CR2 MUTATED" 
   TCGA-F2-A44H    TCGA-FB-A4P5    TCGA-FB-A4P6    TCGA-FB-A545    TCGA-FB-A5VM 
"CR2 WILD-TYPE" "CR2 WILD-TYPE" "CR2 WILD-TYPE" "CR2 WILD-TYPE" "CR2 WILD-TYPE" 
   TCGA-FB-A78T    TCGA-FB-A7DR    TCGA-FZ-5920    TCGA-FZ-5922    TCGA-FZ-5923 
  "CR2 MUTATED" "CR2 WILD-TYPE" "CR2 WILD-TYPE" "CR2 WILD-TYPE" "CR2 WILD-TYPE" 
   TCGA-H6-8124    TCGA-H6-A45N    TCGA-H8-A6C1    TCGA-HZ-7289    TCGA-HZ-7918 
"CR2 WILD-TYPE" "CR2 WILD-TYPE" "CR2 WILD-TYPE" "CR2 WILD-TYPE" "CR2 WILD-TYPE" 
   TCGA-HZ-7919    TCGA-HZ-7922    TCGA-HZ-7923    TCGA-HZ-7924    TCGA-HZ-7925 
"CR2 WILD-TYPE" "CR2 WILD-TYPE" "CR2 WILD-TYPE" "CR2 WILD-TYPE" "CR2 WILD-TYPE" 
   TCGA-HZ-7926    TCGA-HZ-8001    TCGA-HZ-8002    TCGA-HZ-8003    TCGA-HZ-8005 
"CR2 WILD-TYPE" "CR2 WILD-TYPE" "CR2 WILD-TYPE"   "CR2 MUTATED" "CR2 WILD-TYPE" 
   TCGA-HZ-8315    TCGA-HZ-8317    TCGA-HZ-8636    TCGA-HZ-8638    TCGA-HZ-A49G 
"CR2 WILD-TYPE" "CR2 WILD-TYPE" "CR2 WILD-TYPE" "CR2 WILD-TYPE" "CR2 WILD-TYPE" 
   TCGA-HZ-A49H    TCGA-HZ-A4BH    TCGA-HZ-A4BK    TCGA-IB-7644    TCGA-IB-7645 
"CR2 WILD-TYPE" "CR2 WILD-TYPE" "CR2 WILD-TYPE" "CR2 WILD-TYPE" "CR2 WILD-TYPE" 
   TCGA-IB-7646    TCGA-IB-7647    TCGA-IB-7649    TCGA-IB-7651    TCGA-IB-7652 
"CR2 WILD-TYPE" "CR2 WILD-TYPE" "CR2 WILD-TYPE"   "CR2 MUTATED" "CR2 WILD-TYPE" 
   TCGA-IB-7885    TCGA-IB-7886    TCGA-IB-7887    TCGA-IB-7888    TCGA-IB-7889 
"CR2 WILD-TYPE" "CR2 WILD-TYPE" "CR2 WILD-TYPE"   "CR2 MUTATED" "CR2 WILD-TYPE" 
   TCGA-IB-7890    TCGA-IB-7891    TCGA-IB-7893    TCGA-IB-7897    TCGA-IB-8126 
"CR2 WILD-TYPE" "CR2 WILD-TYPE" "CR2 WILD-TYPE" "CR2 WILD-TYPE" "CR2 WILD-TYPE" 
   TCGA-IB-8127    TCGA-IB-A5SO    TCGA-IB-A5SP    TCGA-IB-A5SQ    TCGA-IB-A5SS 
"CR2 WILD-TYPE" "CR2 WILD-TYPE" "CR2 WILD-TYPE" "CR2 WILD-TYPE" "CR2 WILD-TYPE" 
   TCGA-IB-A5ST    TCGA-IB-A6UG    TCGA-LB-A7SX    TCGA-OE-A75W    TCGA-PZ-A5RE 
"CR2 WILD-TYPE" "CR2 WILD-TYPE" "CR2 WILD-TYPE" "CR2 WILD-TYPE" "CR2 WILD-TYPE" 
   TCGA-Q3-A5QY    TCGA-US-A779    TCGA-US-A77E    TCGA-US-A77J 
"CR2 WILD-TYPE" "CR2 WILD-TYPE" "CR2 WILD-TYPE" "CR2 WILD-TYPE" 
   TCGA-F2-6879    TCGA-F2-6880    TCGA-F2-7273    TCGA-F2-7276    TCGA-F2-A44G 
"CR2 WILD-TYPE" "CR2 WILD-TYPE" "CR2 WILD-TYPE" "CR2 WILD-TYPE"   "CR2 MUTATED" 
   TCGA-F2-A44H    TCGA-FB-A4P5    TCGA-FB-A4P6    TCGA-FB-A545    TCGA-FB-A5VM 
"CR2 WILD-TYPE" "CR2 WILD-TYPE" "CR2 WILD-TYPE" "CR2 WILD-TYPE" "CR2 WILD-TYPE" 
   TCGA-FB-A78T    TCGA-FB-A7DR    TCGA-FZ-5920    TCGA-FZ-5922    TCGA-FZ-5923 
  "CR2 MUTATED" "CR2 WILD-TYPE" "CR2 WILD-TYPE" "CR2 WILD-TYPE" "CR2 WILD-TYPE" 
   TCGA-H6-8124    TCGA-H6-A45N    TCGA-H8-A6C1    TCGA-HZ-7289    TCGA-HZ-7918 
"CR2 WILD-TYPE" "CR2 WILD-TYPE" "CR2 WILD-TYPE" "CR2 WILD-TYPE" "CR2 WILD-TYPE" 
   TCGA-HZ-7919    TCGA-HZ-7922    TCGA-HZ-7923    TCGA-HZ-7924    TCGA-HZ-7925 
"CR2 WILD-TYPE" "CR2 WILD-TYPE" "CR2 WILD-TYPE" "CR2 WILD-TYPE" "CR2 WILD-TYPE" 
   TCGA-HZ-7926    TCGA-HZ-8001    TCGA-HZ-8002    TCGA-HZ-8003    TCGA-HZ-8005 
"CR2 WILD-TYPE" "CR2 WILD-TYPE" "CR2 WILD-TYPE"   "CR2 MUTATED" "CR2 WILD-TYPE" 
   TCGA-HZ-8315    TCGA-HZ-8317    TCGA-HZ-8636    TCGA-HZ-8638    TCGA-HZ-A49G 
"CR2 WILD-TYPE" "CR2 WILD-TYPE" "CR2 WILD-TYPE" "CR2 WILD-TYPE" "CR2 WILD-TYPE" 
   TCGA-HZ-A49H    TCGA-HZ-A4BH    TCGA-HZ-A4BK    TCGA-IB-7644    TCGA-IB-7645 
"CR2 WILD-TYPE" "CR2 WILD-TYPE" "CR2 WILD-TYPE" "CR2 WILD-TYPE" "CR2 WILD-TYPE" 
   TCGA-IB-7646    TCGA-IB-7647    TCGA-IB-7649    TCGA-IB-7651    TCGA-IB-7652 
"CR2 WILD-TYPE" "CR2 WILD-TYPE" "CR2 WILD-TYPE"   "CR2 MUTATED" "CR2 WILD-TYPE" 
   TCGA-IB-7885    TCGA-IB-7886    TCGA-IB-7887    TCGA-IB-7888    TCGA-IB-7889 
"CR2 WILD-TYPE" "CR2 WILD-TYPE" "CR2 WILD-TYPE"   "CR2 MUTATED" "CR2 WILD-TYPE" 
   TCGA-IB-7890    TCGA-IB-7891    TCGA-IB-7893    TCGA-IB-7897    TCGA-IB-8126 
"CR2 WILD-TYPE" "CR2 WILD-TYPE" "CR2 WILD-TYPE" "CR2 WILD-TYPE" "CR2 WILD-TYPE" 
   TCGA-IB-8127    TCGA-IB-A5SO    TCGA-IB-A5SP    TCGA-IB-A5SQ    TCGA-IB-A5SS 
"CR2 WILD-TYPE" "CR2 WILD-TYPE" "CR2 WILD-TYPE" "CR2 WILD-TYPE" "CR2 WILD-TYPE" 
   TCGA-IB-A5ST    TCGA-IB-A6UG    TCGA-LB-A7SX    TCGA-OE-A75W    TCGA-PZ-A5RE 
"CR2 WILD-TYPE" "CR2 WILD-TYPE" "CR2 WILD-TYPE" "CR2 WILD-TYPE" "CR2 WILD-TYPE" 
   TCGA-Q3-A5QY    TCGA-US-A779    TCGA-US-A77E    TCGA-US-A77J 
"CR2 WILD-TYPE" "CR2 WILD-TYPE" "CR2 WILD-TYPE" "CR2 WILD-TYPE" 
   TCGA-F2-6879    TCGA-F2-6880    TCGA-F2-7273    TCGA-F2-7276    TCGA-F2-A44G 
"CR2 WILD-TYPE" "CR2 WILD-TYPE" "CR2 WILD-TYPE" "CR2 WILD-TYPE"   "CR2 MUTATED" 
   TCGA-F2-A44H    TCGA-FB-A4P5    TCGA-FB-A4P6    TCGA-FB-A545    TCGA-FB-A5VM 
"CR2 WILD-TYPE" "CR2 WILD-TYPE" "CR2 WILD-TYPE" "CR2 WILD-TYPE" "CR2 WILD-TYPE" 
   TCGA-FB-A78T    TCGA-FB-A7DR    TCGA-FZ-5920    TCGA-FZ-5922    TCGA-FZ-5923 
  "CR2 MUTATED" "CR2 WILD-TYPE" "CR2 WILD-TYPE" "CR2 WILD-TYPE" "CR2 WILD-TYPE" 
   TCGA-H6-8124    TCGA-H6-A45N    TCGA-H8-A6C1    TCGA-HZ-7289    TCGA-HZ-7918 
"CR2 WILD-TYPE" "CR2 WILD-TYPE" "CR2 WILD-TYPE" "CR2 WILD-TYPE" "CR2 WILD-TYPE" 
   TCGA-HZ-7919    TCGA-HZ-7922    TCGA-HZ-7923    TCGA-HZ-7924    TCGA-HZ-7925 
"CR2 WILD-TYPE" "CR2 WILD-TYPE" "CR2 WILD-TYPE" "CR2 WILD-TYPE" "CR2 WILD-TYPE" 
   TCGA-HZ-7926    TCGA-HZ-8001    TCGA-HZ-8002    TCGA-HZ-8003    TCGA-HZ-8005 
"CR2 WILD-TYPE" "CR2 WILD-TYPE" "CR2 WILD-TYPE"   "CR2 MUTATED" "CR2 WILD-TYPE" 
   TCGA-HZ-8315    TCGA-HZ-8317    TCGA-HZ-8636    TCGA-HZ-8638    TCGA-HZ-A49G 
"CR2 WILD-TYPE" "CR2 WILD-TYPE" "CR2 WILD-TYPE" "CR2 WILD-TYPE" "CR2 WILD-TYPE" 
   TCGA-HZ-A49H    TCGA-HZ-A4BH    TCGA-HZ-A4BK    TCGA-IB-7644    TCGA-IB-7645 
"CR2 WILD-TYPE" "CR2 WILD-TYPE" "CR2 WILD-TYPE" "CR2 WILD-TYPE" "CR2 WILD-TYPE" 
   TCGA-IB-7646    TCGA-IB-7647    TCGA-IB-7649    TCGA-IB-7651    TCGA-IB-7652 
"CR2 WILD-TYPE" "CR2 WILD-TYPE" "CR2 WILD-TYPE"   "CR2 MUTATED" "CR2 WILD-TYPE" 
   TCGA-IB-7885    TCGA-IB-7886    TCGA-IB-7887    TCGA-IB-7888    TCGA-IB-7889 
"CR2 WILD-TYPE" "CR2 WILD-TYPE" "CR2 WILD-TYPE"   "CR2 MUTATED" "CR2 WILD-TYPE" 
   TCGA-IB-7890    TCGA-IB-7891    TCGA-IB-7893    TCGA-IB-7897    TCGA-IB-8126 
"CR2 WILD-TYPE" "CR2 WILD-TYPE" "CR2 WILD-TYPE" "CR2 WILD-TYPE" "CR2 WILD-TYPE" 
   TCGA-IB-8127    TCGA-IB-A5SO    TCGA-IB-A5SP    TCGA-IB-A5SQ    TCGA-IB-A5SS 
"CR2 WILD-TYPE" "CR2 WILD-TYPE" "CR2 WILD-TYPE" "CR2 WILD-TYPE" "CR2 WILD-TYPE" 
   TCGA-IB-A5ST    TCGA-IB-A6UG    TCGA-LB-A7SX    TCGA-OE-A75W    TCGA-PZ-A5RE 
"CR2 WILD-TYPE" "CR2 WILD-TYPE" "CR2 WILD-TYPE" "CR2 WILD-TYPE" "CR2 WILD-TYPE" 
   TCGA-Q3-A5QY    TCGA-US-A779    TCGA-US-A77E    TCGA-US-A77J 
"CR2 WILD-TYPE" "CR2 WILD-TYPE" "CR2 WILD-TYPE" "CR2 WILD-TYPE" 
[1] "hr=" "1.3"
D406V2, continuous
               vv
clus            STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  CR2 MUTATED          0        0         1         5         0        0
  CR2 WILD-TYPE        1        4        10        46         2        3
D406V3, multiclass
               vv
clus            T1+T2 T3+T4
  CR2 MUTATED       0     6
  CR2 WILD-TYPE     6    60
D406V4, multiclass
       clus
vv      CR2 MUTATED CR2 WILD-TYPE
  T1+T2           0             6
  T3+T4           6            60
D406V5, binary
               cls
clus             0  1
  CR2 MUTATED    1  5
  CR2 WILD-TYPE 16 49
[1] "tbl2"
               cls
clus            [,1] [,2]
  CR2 MUTATED      1    5
  CR2 WILD-TYPE   16   49
   clus
vv  CR2 MUTATED CR2 WILD-TYPE
  0           1            16
  1           5            49
               vv
clus            M0 M1 MX
  CR2 MUTATED    4  0  2
  CR2 WILD-TYPE 35  3 28
D406V6, multiclass
    clus
vv   CR2 MUTATED CR2 WILD-TYPE
  M0           4            35
  M1           0             3
  MX           2            28
D406V7, binary
               cls
clus             0  1
  CR2 MUTATED    5  1
  CR2 WILD-TYPE 31 35
[1] "tbl2"
               cls
clus            [,1] [,2]
  CR2 MUTATED      5    1
  CR2 WILD-TYPE   31   35
        clus
vv       CR2 MUTATED CR2 WILD-TYPE
  FEMALE           5            31
  MALE             1            35
               vv
clus            PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  CR2 MUTATED                                     6
  CR2 WILD-TYPE                                  59
               vv
clus            PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  CR2 MUTATED                                       0
  CR2 WILD-TYPE                                     4
               vv
clus            PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  CR2 MUTATED                                                  0
  CR2 WILD-TYPE                                                2
D406V8, multiclass
                                                  clus
vv                                                 CR2 MUTATED CR2 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                        6            59
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                      0             4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA           0             2
D406V9, continuous
[1] "Remove cluster labels:" "CR2 MUTATED"           
clus
  CR2 MUTATED CR2 WILD-TYPE 
            2            20 
   TCGA-F2-6880    TCGA-FB-A4P5    TCGA-FB-A4P6    TCGA-FB-A5VM    TCGA-FB-A7DR 
"CR2 WILD-TYPE" "CR2 WILD-TYPE" "CR2 WILD-TYPE" "CR2 WILD-TYPE" "CR2 WILD-TYPE" 
   TCGA-H6-8124    TCGA-H6-A45N    TCGA-H8-A6C1    TCGA-IB-7644    TCGA-IB-7649 
"CR2 WILD-TYPE" "CR2 WILD-TYPE" "CR2 WILD-TYPE" "CR2 WILD-TYPE" "CR2 WILD-TYPE" 
   TCGA-IB-7885    TCGA-IB-7886    TCGA-IB-7887    TCGA-IB-7891    TCGA-IB-8126 
"CR2 WILD-TYPE" "CR2 WILD-TYPE" "CR2 WILD-TYPE" "CR2 WILD-TYPE" "CR2 WILD-TYPE" 
   TCGA-IB-8127    TCGA-IB-A5SS    TCGA-IB-A6UG    TCGA-LB-A7SX    TCGA-OE-A75W 
"CR2 WILD-TYPE" "CR2 WILD-TYPE" "CR2 WILD-TYPE" "CR2 WILD-TYPE" "CR2 WILD-TYPE" 
D406V10, continuous
[1] "Remove cluster labels:" "CR2 MUTATED"           
clus
  CR2 MUTATED CR2 WILD-TYPE 
            2            17 
   TCGA-FB-A4P5    TCGA-FB-A4P6    TCGA-FB-A5VM    TCGA-FB-A7DR    TCGA-H6-8124 
"CR2 WILD-TYPE" "CR2 WILD-TYPE" "CR2 WILD-TYPE" "CR2 WILD-TYPE" "CR2 WILD-TYPE" 
   TCGA-H8-A6C1    TCGA-IB-7644    TCGA-IB-7649    TCGA-IB-7885    TCGA-IB-7886 
"CR2 WILD-TYPE" "CR2 WILD-TYPE" "CR2 WILD-TYPE" "CR2 WILD-TYPE" "CR2 WILD-TYPE" 
   TCGA-IB-7891    TCGA-IB-8126    TCGA-IB-8127    TCGA-IB-A5SS    TCGA-IB-A6UG 
"CR2 WILD-TYPE" "CR2 WILD-TYPE" "CR2 WILD-TYPE" "CR2 WILD-TYPE" "CR2 WILD-TYPE" 
   TCGA-LB-A7SX    TCGA-OE-A75W 
"CR2 WILD-TYPE" "CR2 WILD-TYPE" 
               vv
clus            R0 R1 RX
  CR2 MUTATED    4  2  0
  CR2 WILD-TYPE 38 22  2
D406V11, multiclass
    clus
vv   CR2 MUTATED CR2 WILD-TYPE
  R0           4            38
  R1           2            22
  RX           0             2
D406V12, continuous

Clustering(407) Variable = YBX2 MUTATION ANALYSIS
D407V1, survival
                sevent
clus2             0  1
  YBX2 MUTATED    1  2
  YBX2 WILD-TYPE 39 27
  YBX2 MUTATED YBX2 WILD-TYPE 
             3             66 
  YBX2 MUTATED YBX2 WILD-TYPE 
             2             27 
$`YBX2 MUTATED`
TCGA-HZ-8003 TCGA-IB-7645 TCGA-IB-7651 
        0.69        49.38        19.82 

$`YBX2 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P5 TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR 
        0.13        11.93        12.66         2.47         0.03         5.46 
TCGA-FZ-5920 TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 
        2.01        36.20        20.81        12.89         7.66        13.02 
TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 
        7.89         0.92         0.66         0.13         0.26        12.13 
TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8005 TCGA-HZ-8315 
       11.87         0.26         0.62         0.79         3.95         0.92 
TCGA-HZ-8317 TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH 
        0.53         0.16         2.99         0.76         0.95         6.38 
TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7652 
        1.51        11.41         4.77        21.90        15.35        15.65 
TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 
       27.98         4.04         3.62        43.79        15.81        19.66 
TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO 
       16.04         3.85        15.98         0.56        17.16        10.82 
TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX 
        9.86         7.20        15.12         0.26         1.35         4.18 
TCGA-OE-A75W TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
        3.62         8.12        13.68        16.80        14.14        18.67 

  YBX2 MUTATED YBX2 WILD-TYPE 
          0.69           0.03 
  YBX2 MUTATED YBX2 WILD-TYPE 
         49.38          43.79 
  YBX2 MUTATED YBX2 WILD-TYPE 
         19.82           7.43 
[1] "0.7 - 49.4 (19.8)" "0.0 - 43.8 (7.4)" 
    TCGA-F2-6879     TCGA-F2-6880     TCGA-F2-7273     TCGA-F2-7276 
"YBX2 WILD-TYPE" "YBX2 WILD-TYPE" "YBX2 WILD-TYPE" "YBX2 WILD-TYPE" 
    TCGA-F2-A44G     TCGA-F2-A44H     TCGA-FB-A4P5     TCGA-FB-A4P6 
"YBX2 WILD-TYPE" "YBX2 WILD-TYPE" "YBX2 WILD-TYPE" "YBX2 WILD-TYPE" 
    TCGA-FB-A545     TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-FB-A7DR 
"YBX2 WILD-TYPE" "YBX2 WILD-TYPE" "YBX2 WILD-TYPE" "YBX2 WILD-TYPE" 
    TCGA-FZ-5920     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-H6-8124 
"YBX2 WILD-TYPE" "YBX2 WILD-TYPE" "YBX2 WILD-TYPE" "YBX2 WILD-TYPE" 
    TCGA-H6-A45N     TCGA-H8-A6C1     TCGA-HZ-7289     TCGA-HZ-7918 
"YBX2 WILD-TYPE" "YBX2 WILD-TYPE" "YBX2 WILD-TYPE" "YBX2 WILD-TYPE" 
    TCGA-HZ-7919     TCGA-HZ-7922     TCGA-HZ-7923     TCGA-HZ-7924 
"YBX2 WILD-TYPE" "YBX2 WILD-TYPE" "YBX2 WILD-TYPE" "YBX2 WILD-TYPE" 
    TCGA-HZ-7925     TCGA-HZ-7926     TCGA-HZ-8001     TCGA-HZ-8002 
"YBX2 WILD-TYPE" "YBX2 WILD-TYPE" "YBX2 WILD-TYPE" "YBX2 WILD-TYPE" 
    TCGA-HZ-8003     TCGA-HZ-8005     TCGA-HZ-8315     TCGA-HZ-8317 
  "YBX2 MUTATED" "YBX2 WILD-TYPE" "YBX2 WILD-TYPE" "YBX2 WILD-TYPE" 
    TCGA-HZ-8636     TCGA-HZ-8638     TCGA-HZ-A49G     TCGA-HZ-A49H 
"YBX2 WILD-TYPE" "YBX2 WILD-TYPE" "YBX2 WILD-TYPE" "YBX2 WILD-TYPE" 
    TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-IB-7644     TCGA-IB-7645 
"YBX2 WILD-TYPE" "YBX2 WILD-TYPE" "YBX2 WILD-TYPE"   "YBX2 MUTATED" 
    TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7651 
"YBX2 WILD-TYPE" "YBX2 WILD-TYPE" "YBX2 WILD-TYPE"   "YBX2 MUTATED" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887 
"YBX2 WILD-TYPE" "YBX2 WILD-TYPE" "YBX2 WILD-TYPE" "YBX2 WILD-TYPE" 
    TCGA-IB-7888     TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891 
"YBX2 WILD-TYPE" "YBX2 WILD-TYPE" "YBX2 WILD-TYPE" "YBX2 WILD-TYPE" 
    TCGA-IB-7893     TCGA-IB-7897     TCGA-IB-8126     TCGA-IB-8127 
"YBX2 WILD-TYPE" "YBX2 WILD-TYPE" "YBX2 WILD-TYPE" "YBX2 WILD-TYPE" 
    TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS 
"YBX2 WILD-TYPE" "YBX2 WILD-TYPE" "YBX2 WILD-TYPE" "YBX2 WILD-TYPE" 
    TCGA-IB-A5ST     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
"YBX2 WILD-TYPE" "YBX2 WILD-TYPE" "YBX2 WILD-TYPE" "YBX2 WILD-TYPE" 
    TCGA-PZ-A5RE     TCGA-Q3-A5QY     TCGA-US-A779     TCGA-US-A77E 
"YBX2 WILD-TYPE" "YBX2 WILD-TYPE" "YBX2 WILD-TYPE" "YBX2 WILD-TYPE" 
    TCGA-US-A77J 
"YBX2 WILD-TYPE" 
    TCGA-F2-6879     TCGA-F2-6880     TCGA-F2-7273     TCGA-F2-7276 
"YBX2 WILD-TYPE" "YBX2 WILD-TYPE" "YBX2 WILD-TYPE" "YBX2 WILD-TYPE" 
    TCGA-F2-A44G     TCGA-F2-A44H     TCGA-FB-A4P5     TCGA-FB-A4P6 
"YBX2 WILD-TYPE" "YBX2 WILD-TYPE" "YBX2 WILD-TYPE" "YBX2 WILD-TYPE" 
    TCGA-FB-A545     TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-FB-A7DR 
"YBX2 WILD-TYPE" "YBX2 WILD-TYPE" "YBX2 WILD-TYPE" "YBX2 WILD-TYPE" 
    TCGA-FZ-5920     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-H6-8124 
"YBX2 WILD-TYPE" "YBX2 WILD-TYPE" "YBX2 WILD-TYPE" "YBX2 WILD-TYPE" 
    TCGA-H6-A45N     TCGA-H8-A6C1     TCGA-HZ-7289     TCGA-HZ-7918 
"YBX2 WILD-TYPE" "YBX2 WILD-TYPE" "YBX2 WILD-TYPE" "YBX2 WILD-TYPE" 
    TCGA-HZ-7919     TCGA-HZ-7922     TCGA-HZ-7923     TCGA-HZ-7924 
"YBX2 WILD-TYPE" "YBX2 WILD-TYPE" "YBX2 WILD-TYPE" "YBX2 WILD-TYPE" 
    TCGA-HZ-7925     TCGA-HZ-7926     TCGA-HZ-8001     TCGA-HZ-8002 
"YBX2 WILD-TYPE" "YBX2 WILD-TYPE" "YBX2 WILD-TYPE" "YBX2 WILD-TYPE" 
    TCGA-HZ-8003     TCGA-HZ-8005     TCGA-HZ-8315     TCGA-HZ-8317 
  "YBX2 MUTATED" "YBX2 WILD-TYPE" "YBX2 WILD-TYPE" "YBX2 WILD-TYPE" 
    TCGA-HZ-8636     TCGA-HZ-8638     TCGA-HZ-A49G     TCGA-HZ-A49H 
"YBX2 WILD-TYPE" "YBX2 WILD-TYPE" "YBX2 WILD-TYPE" "YBX2 WILD-TYPE" 
    TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-IB-7644     TCGA-IB-7645 
"YBX2 WILD-TYPE" "YBX2 WILD-TYPE" "YBX2 WILD-TYPE"   "YBX2 MUTATED" 
    TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7651 
"YBX2 WILD-TYPE" "YBX2 WILD-TYPE" "YBX2 WILD-TYPE"   "YBX2 MUTATED" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887 
"YBX2 WILD-TYPE" "YBX2 WILD-TYPE" "YBX2 WILD-TYPE" "YBX2 WILD-TYPE" 
    TCGA-IB-7888     TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891 
"YBX2 WILD-TYPE" "YBX2 WILD-TYPE" "YBX2 WILD-TYPE" "YBX2 WILD-TYPE" 
    TCGA-IB-7893     TCGA-IB-7897     TCGA-IB-8126     TCGA-IB-8127 
"YBX2 WILD-TYPE" "YBX2 WILD-TYPE" "YBX2 WILD-TYPE" "YBX2 WILD-TYPE" 
    TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS 
"YBX2 WILD-TYPE" "YBX2 WILD-TYPE" "YBX2 WILD-TYPE" "YBX2 WILD-TYPE" 
    TCGA-IB-A5ST     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
"YBX2 WILD-TYPE" "YBX2 WILD-TYPE" "YBX2 WILD-TYPE" "YBX2 WILD-TYPE" 
    TCGA-PZ-A5RE     TCGA-Q3-A5QY     TCGA-US-A779     TCGA-US-A77E 
"YBX2 WILD-TYPE" "YBX2 WILD-TYPE" "YBX2 WILD-TYPE" "YBX2 WILD-TYPE" 
    TCGA-US-A77J 
"YBX2 WILD-TYPE" 
    TCGA-F2-6879     TCGA-F2-6880     TCGA-F2-7273     TCGA-F2-7276 
"YBX2 WILD-TYPE" "YBX2 WILD-TYPE" "YBX2 WILD-TYPE" "YBX2 WILD-TYPE" 
    TCGA-F2-A44G     TCGA-F2-A44H     TCGA-FB-A4P5     TCGA-FB-A4P6 
"YBX2 WILD-TYPE" "YBX2 WILD-TYPE" "YBX2 WILD-TYPE" "YBX2 WILD-TYPE" 
    TCGA-FB-A545     TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-FB-A7DR 
"YBX2 WILD-TYPE" "YBX2 WILD-TYPE" "YBX2 WILD-TYPE" "YBX2 WILD-TYPE" 
    TCGA-FZ-5920     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-H6-8124 
"YBX2 WILD-TYPE" "YBX2 WILD-TYPE" "YBX2 WILD-TYPE" "YBX2 WILD-TYPE" 
    TCGA-H6-A45N     TCGA-H8-A6C1     TCGA-HZ-7289     TCGA-HZ-7918 
"YBX2 WILD-TYPE" "YBX2 WILD-TYPE" "YBX2 WILD-TYPE" "YBX2 WILD-TYPE" 
    TCGA-HZ-7919     TCGA-HZ-7922     TCGA-HZ-7923     TCGA-HZ-7924 
"YBX2 WILD-TYPE" "YBX2 WILD-TYPE" "YBX2 WILD-TYPE" "YBX2 WILD-TYPE" 
    TCGA-HZ-7925     TCGA-HZ-7926     TCGA-HZ-8001     TCGA-HZ-8002 
"YBX2 WILD-TYPE" "YBX2 WILD-TYPE" "YBX2 WILD-TYPE" "YBX2 WILD-TYPE" 
    TCGA-HZ-8003     TCGA-HZ-8005     TCGA-HZ-8315     TCGA-HZ-8317 
  "YBX2 MUTATED" "YBX2 WILD-TYPE" "YBX2 WILD-TYPE" "YBX2 WILD-TYPE" 
    TCGA-HZ-8636     TCGA-HZ-8638     TCGA-HZ-A49G     TCGA-HZ-A49H 
"YBX2 WILD-TYPE" "YBX2 WILD-TYPE" "YBX2 WILD-TYPE" "YBX2 WILD-TYPE" 
    TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-IB-7644     TCGA-IB-7645 
"YBX2 WILD-TYPE" "YBX2 WILD-TYPE" "YBX2 WILD-TYPE"   "YBX2 MUTATED" 
    TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7651 
"YBX2 WILD-TYPE" "YBX2 WILD-TYPE" "YBX2 WILD-TYPE"   "YBX2 MUTATED" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887 
"YBX2 WILD-TYPE" "YBX2 WILD-TYPE" "YBX2 WILD-TYPE" "YBX2 WILD-TYPE" 
    TCGA-IB-7888     TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891 
"YBX2 WILD-TYPE" "YBX2 WILD-TYPE" "YBX2 WILD-TYPE" "YBX2 WILD-TYPE" 
    TCGA-IB-7893     TCGA-IB-7897     TCGA-IB-8126     TCGA-IB-8127 
"YBX2 WILD-TYPE" "YBX2 WILD-TYPE" "YBX2 WILD-TYPE" "YBX2 WILD-TYPE" 
    TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS 
"YBX2 WILD-TYPE" "YBX2 WILD-TYPE" "YBX2 WILD-TYPE" "YBX2 WILD-TYPE" 
    TCGA-IB-A5ST     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
"YBX2 WILD-TYPE" "YBX2 WILD-TYPE" "YBX2 WILD-TYPE" "YBX2 WILD-TYPE" 
    TCGA-PZ-A5RE     TCGA-Q3-A5QY     TCGA-US-A779     TCGA-US-A77E 
"YBX2 WILD-TYPE" "YBX2 WILD-TYPE" "YBX2 WILD-TYPE" "YBX2 WILD-TYPE" 
    TCGA-US-A77J 
"YBX2 WILD-TYPE" 
[1] "hr=" "4.3"
D407V2, continuous
                vv
clus             STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  YBX2 MUTATED          0        0         0         3         0        0
  YBX2 WILD-TYPE        1        4        11        48         2        3
D407V3, multiclass
                vv
clus             T1+T2 T3+T4
  YBX2 MUTATED       0     3
  YBX2 WILD-TYPE     6    63
D407V4, multiclass
       clus
vv      YBX2 MUTATED YBX2 WILD-TYPE
  T1+T2            0              6
  T3+T4            3             63
D407V5, binary
                cls
clus              0  1
  YBX2 MUTATED    0  3
  YBX2 WILD-TYPE 17 51
[1] "tbl2"
                cls
clus             [,1] [,2]
  YBX2 MUTATED      0    3
  YBX2 WILD-TYPE   17   51
   clus
vv  YBX2 MUTATED YBX2 WILD-TYPE
  0            0             17
  1            3             51
                vv
clus             M0 M1 MX
  YBX2 MUTATED    2  0  1
  YBX2 WILD-TYPE 37  3 29
D407V6, multiclass
    clus
vv   YBX2 MUTATED YBX2 WILD-TYPE
  M0            2             37
  M1            0              3
  MX            1             29
D407V7, binary
                cls
clus              0  1
  YBX2 MUTATED    3  0
  YBX2 WILD-TYPE 33 36
[1] "tbl2"
                cls
clus             [,1] [,2]
  YBX2 MUTATED      3    0
  YBX2 WILD-TYPE   33   36
        clus
vv       YBX2 MUTATED YBX2 WILD-TYPE
  FEMALE            3             33
  MALE              0             36
                vv
clus             PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  YBX2 MUTATED                                     3
  YBX2 WILD-TYPE                                  62
                vv
clus             PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  YBX2 MUTATED                                       0
  YBX2 WILD-TYPE                                     4
                vv
clus             PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  YBX2 MUTATED                                                  0
  YBX2 WILD-TYPE                                                2
D407V8, multiclass
                                                  clus
vv                                                 YBX2 MUTATED YBX2 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                         3             62
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                       0              4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA            0              2
D407V9, continuous
[1] "Remove cluster labels:" "YBX2 MUTATED"          
clus
  YBX2 MUTATED YBX2 WILD-TYPE 
             1             21 
    TCGA-F2-6880     TCGA-FB-A4P5     TCGA-FB-A4P6     TCGA-FB-A5VM 
"YBX2 WILD-TYPE" "YBX2 WILD-TYPE" "YBX2 WILD-TYPE" "YBX2 WILD-TYPE" 
    TCGA-FB-A78T     TCGA-FB-A7DR     TCGA-H6-8124     TCGA-H6-A45N 
"YBX2 WILD-TYPE" "YBX2 WILD-TYPE" "YBX2 WILD-TYPE" "YBX2 WILD-TYPE" 
    TCGA-H8-A6C1     TCGA-IB-7644     TCGA-IB-7649     TCGA-IB-7885 
"YBX2 WILD-TYPE" "YBX2 WILD-TYPE" "YBX2 WILD-TYPE" "YBX2 WILD-TYPE" 
    TCGA-IB-7886     TCGA-IB-7887     TCGA-IB-7891     TCGA-IB-8126 
"YBX2 WILD-TYPE" "YBX2 WILD-TYPE" "YBX2 WILD-TYPE" "YBX2 WILD-TYPE" 
    TCGA-IB-8127     TCGA-IB-A5SS     TCGA-IB-A6UG     TCGA-LB-A7SX 
"YBX2 WILD-TYPE" "YBX2 WILD-TYPE" "YBX2 WILD-TYPE" "YBX2 WILD-TYPE" 
    TCGA-OE-A75W 
"YBX2 WILD-TYPE" 
D407V10, continuous
[1] "Remove cluster labels:" "YBX2 MUTATED"          
clus
  YBX2 MUTATED YBX2 WILD-TYPE 
             1             18 
    TCGA-FB-A4P5     TCGA-FB-A4P6     TCGA-FB-A5VM     TCGA-FB-A78T 
"YBX2 WILD-TYPE" "YBX2 WILD-TYPE" "YBX2 WILD-TYPE" "YBX2 WILD-TYPE" 
    TCGA-FB-A7DR     TCGA-H6-8124     TCGA-H8-A6C1     TCGA-IB-7644 
"YBX2 WILD-TYPE" "YBX2 WILD-TYPE" "YBX2 WILD-TYPE" "YBX2 WILD-TYPE" 
    TCGA-IB-7649     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7891 
"YBX2 WILD-TYPE" "YBX2 WILD-TYPE" "YBX2 WILD-TYPE" "YBX2 WILD-TYPE" 
    TCGA-IB-8126     TCGA-IB-8127     TCGA-IB-A5SS     TCGA-IB-A6UG 
"YBX2 WILD-TYPE" "YBX2 WILD-TYPE" "YBX2 WILD-TYPE" "YBX2 WILD-TYPE" 
    TCGA-LB-A7SX     TCGA-OE-A75W 
"YBX2 WILD-TYPE" "YBX2 WILD-TYPE" 
                vv
clus             R0 R1 RX
  YBX2 MUTATED    3  0  0
  YBX2 WILD-TYPE 39 24  2
D407V11, multiclass
    clus
vv   YBX2 MUTATED YBX2 WILD-TYPE
  R0            3             39
  R1            0             24
  RX            0              2
D407V12, continuous

Clustering(408) Variable = CCDC63 MUTATION ANALYSIS
D408V1, survival
                  sevent
clus2               0  1
  CCDC63 MUTATED    1  2
  CCDC63 WILD-TYPE 39 27
  CCDC63 MUTATED CCDC63 WILD-TYPE 
               3               66 
  CCDC63 MUTATED CCDC63 WILD-TYPE 
               2               27 
$`CCDC63 MUTATED`
TCGA-IB-7651 TCGA-IB-7891 TCGA-IB-7897 
       19.82        16.04        15.98 

$`CCDC63 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P5 TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR 
        0.13        11.93        12.66         2.47         0.03         5.46 
TCGA-FZ-5920 TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 
        2.01        36.20        20.81        12.89         7.66        13.02 
TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 
        7.89         0.92         0.66         0.13         0.26        12.13 
TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 
       11.87         0.26         0.62         0.79         0.69         3.95 
TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H 
        0.92         0.53         0.16         2.99         0.76         0.95 
TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 
        6.38         1.51        11.41        49.38         4.77        21.90 
TCGA-IB-7649 TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7888 
       15.35        15.65        27.98         4.04         3.62        43.79 
TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7893 TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO 
       15.81        19.66         3.85         0.56        17.16        10.82 
TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX 
        9.86         7.20        15.12         0.26         1.35         4.18 
TCGA-OE-A75W TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
        3.62         8.12        13.68        16.80        14.14        18.67 

  CCDC63 MUTATED CCDC63 WILD-TYPE 
           15.98             0.03 
  CCDC63 MUTATED CCDC63 WILD-TYPE 
           19.82            49.38 
  CCDC63 MUTATED CCDC63 WILD-TYPE 
           16.04             7.15 
[1] "16.0 - 19.8 (16.0)" "0.0 - 49.4 (7.2)"  
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
"CCDC63 WILD-TYPE" "CCDC63 WILD-TYPE" "CCDC63 WILD-TYPE" "CCDC63 WILD-TYPE" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"CCDC63 WILD-TYPE" "CCDC63 WILD-TYPE" "CCDC63 WILD-TYPE" "CCDC63 WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
"CCDC63 WILD-TYPE" "CCDC63 WILD-TYPE" "CCDC63 WILD-TYPE" "CCDC63 WILD-TYPE" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"CCDC63 WILD-TYPE" "CCDC63 WILD-TYPE" "CCDC63 WILD-TYPE" "CCDC63 WILD-TYPE" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
"CCDC63 WILD-TYPE" "CCDC63 WILD-TYPE" "CCDC63 WILD-TYPE" "CCDC63 WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
"CCDC63 WILD-TYPE" "CCDC63 WILD-TYPE" "CCDC63 WILD-TYPE" "CCDC63 WILD-TYPE" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"CCDC63 WILD-TYPE" "CCDC63 WILD-TYPE" "CCDC63 WILD-TYPE" "CCDC63 WILD-TYPE" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
"CCDC63 WILD-TYPE" "CCDC63 WILD-TYPE" "CCDC63 WILD-TYPE" "CCDC63 WILD-TYPE" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
"CCDC63 WILD-TYPE" "CCDC63 WILD-TYPE" "CCDC63 WILD-TYPE" "CCDC63 WILD-TYPE" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
"CCDC63 WILD-TYPE" "CCDC63 WILD-TYPE" "CCDC63 WILD-TYPE" "CCDC63 WILD-TYPE" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
"CCDC63 WILD-TYPE" "CCDC63 WILD-TYPE" "CCDC63 WILD-TYPE"   "CCDC63 MUTATED" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
"CCDC63 WILD-TYPE" "CCDC63 WILD-TYPE" "CCDC63 WILD-TYPE" "CCDC63 WILD-TYPE" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
"CCDC63 WILD-TYPE" "CCDC63 WILD-TYPE" "CCDC63 WILD-TYPE"   "CCDC63 MUTATED" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
"CCDC63 WILD-TYPE"   "CCDC63 MUTATED" "CCDC63 WILD-TYPE" "CCDC63 WILD-TYPE" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"CCDC63 WILD-TYPE" "CCDC63 WILD-TYPE" "CCDC63 WILD-TYPE" "CCDC63 WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"CCDC63 WILD-TYPE" "CCDC63 WILD-TYPE" "CCDC63 WILD-TYPE" "CCDC63 WILD-TYPE" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
"CCDC63 WILD-TYPE" "CCDC63 WILD-TYPE" "CCDC63 WILD-TYPE" "CCDC63 WILD-TYPE" 
      TCGA-US-A77J 
"CCDC63 WILD-TYPE" 
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
"CCDC63 WILD-TYPE" "CCDC63 WILD-TYPE" "CCDC63 WILD-TYPE" "CCDC63 WILD-TYPE" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"CCDC63 WILD-TYPE" "CCDC63 WILD-TYPE" "CCDC63 WILD-TYPE" "CCDC63 WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
"CCDC63 WILD-TYPE" "CCDC63 WILD-TYPE" "CCDC63 WILD-TYPE" "CCDC63 WILD-TYPE" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"CCDC63 WILD-TYPE" "CCDC63 WILD-TYPE" "CCDC63 WILD-TYPE" "CCDC63 WILD-TYPE" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
"CCDC63 WILD-TYPE" "CCDC63 WILD-TYPE" "CCDC63 WILD-TYPE" "CCDC63 WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
"CCDC63 WILD-TYPE" "CCDC63 WILD-TYPE" "CCDC63 WILD-TYPE" "CCDC63 WILD-TYPE" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"CCDC63 WILD-TYPE" "CCDC63 WILD-TYPE" "CCDC63 WILD-TYPE" "CCDC63 WILD-TYPE" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
"CCDC63 WILD-TYPE" "CCDC63 WILD-TYPE" "CCDC63 WILD-TYPE" "CCDC63 WILD-TYPE" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
"CCDC63 WILD-TYPE" "CCDC63 WILD-TYPE" "CCDC63 WILD-TYPE" "CCDC63 WILD-TYPE" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
"CCDC63 WILD-TYPE" "CCDC63 WILD-TYPE" "CCDC63 WILD-TYPE" "CCDC63 WILD-TYPE" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
"CCDC63 WILD-TYPE" "CCDC63 WILD-TYPE" "CCDC63 WILD-TYPE"   "CCDC63 MUTATED" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
"CCDC63 WILD-TYPE" "CCDC63 WILD-TYPE" "CCDC63 WILD-TYPE" "CCDC63 WILD-TYPE" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
"CCDC63 WILD-TYPE" "CCDC63 WILD-TYPE" "CCDC63 WILD-TYPE"   "CCDC63 MUTATED" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
"CCDC63 WILD-TYPE"   "CCDC63 MUTATED" "CCDC63 WILD-TYPE" "CCDC63 WILD-TYPE" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"CCDC63 WILD-TYPE" "CCDC63 WILD-TYPE" "CCDC63 WILD-TYPE" "CCDC63 WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"CCDC63 WILD-TYPE" "CCDC63 WILD-TYPE" "CCDC63 WILD-TYPE" "CCDC63 WILD-TYPE" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
"CCDC63 WILD-TYPE" "CCDC63 WILD-TYPE" "CCDC63 WILD-TYPE" "CCDC63 WILD-TYPE" 
      TCGA-US-A77J 
"CCDC63 WILD-TYPE" 
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
"CCDC63 WILD-TYPE" "CCDC63 WILD-TYPE" "CCDC63 WILD-TYPE" "CCDC63 WILD-TYPE" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"CCDC63 WILD-TYPE" "CCDC63 WILD-TYPE" "CCDC63 WILD-TYPE" "CCDC63 WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
"CCDC63 WILD-TYPE" "CCDC63 WILD-TYPE" "CCDC63 WILD-TYPE" "CCDC63 WILD-TYPE" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"CCDC63 WILD-TYPE" "CCDC63 WILD-TYPE" "CCDC63 WILD-TYPE" "CCDC63 WILD-TYPE" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
"CCDC63 WILD-TYPE" "CCDC63 WILD-TYPE" "CCDC63 WILD-TYPE" "CCDC63 WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
"CCDC63 WILD-TYPE" "CCDC63 WILD-TYPE" "CCDC63 WILD-TYPE" "CCDC63 WILD-TYPE" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"CCDC63 WILD-TYPE" "CCDC63 WILD-TYPE" "CCDC63 WILD-TYPE" "CCDC63 WILD-TYPE" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
"CCDC63 WILD-TYPE" "CCDC63 WILD-TYPE" "CCDC63 WILD-TYPE" "CCDC63 WILD-TYPE" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
"CCDC63 WILD-TYPE" "CCDC63 WILD-TYPE" "CCDC63 WILD-TYPE" "CCDC63 WILD-TYPE" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
"CCDC63 WILD-TYPE" "CCDC63 WILD-TYPE" "CCDC63 WILD-TYPE" "CCDC63 WILD-TYPE" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
"CCDC63 WILD-TYPE" "CCDC63 WILD-TYPE" "CCDC63 WILD-TYPE"   "CCDC63 MUTATED" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
"CCDC63 WILD-TYPE" "CCDC63 WILD-TYPE" "CCDC63 WILD-TYPE" "CCDC63 WILD-TYPE" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
"CCDC63 WILD-TYPE" "CCDC63 WILD-TYPE" "CCDC63 WILD-TYPE"   "CCDC63 MUTATED" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
"CCDC63 WILD-TYPE"   "CCDC63 MUTATED" "CCDC63 WILD-TYPE" "CCDC63 WILD-TYPE" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"CCDC63 WILD-TYPE" "CCDC63 WILD-TYPE" "CCDC63 WILD-TYPE" "CCDC63 WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"CCDC63 WILD-TYPE" "CCDC63 WILD-TYPE" "CCDC63 WILD-TYPE" "CCDC63 WILD-TYPE" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
"CCDC63 WILD-TYPE" "CCDC63 WILD-TYPE" "CCDC63 WILD-TYPE" "CCDC63 WILD-TYPE" 
      TCGA-US-A77J 
"CCDC63 WILD-TYPE" 
[1] "hr=" "1.3"
D408V2, continuous
                  vv
clus               STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  CCDC63 MUTATED          0        0         0         3         0        0
  CCDC63 WILD-TYPE        1        4        11        48         2        3
D408V3, multiclass
                  vv
clus               T1+T2 T3+T4
  CCDC63 MUTATED       0     3
  CCDC63 WILD-TYPE     6    63
D408V4, multiclass
       clus
vv      CCDC63 MUTATED CCDC63 WILD-TYPE
  T1+T2              0                6
  T3+T4              3               63
D408V5, binary
                  cls
clus                0  1
  CCDC63 MUTATED    0  3
  CCDC63 WILD-TYPE 17 51
[1] "tbl2"
                  cls
clus               [,1] [,2]
  CCDC63 MUTATED      0    3
  CCDC63 WILD-TYPE   17   51
   clus
vv  CCDC63 MUTATED CCDC63 WILD-TYPE
  0              0               17
  1              3               51
                  vv
clus               M0 M1 MX
  CCDC63 MUTATED    3  0  0
  CCDC63 WILD-TYPE 36  3 30
D408V6, multiclass
    clus
vv   CCDC63 MUTATED CCDC63 WILD-TYPE
  M0              3               36
  M1              0                3
  MX              0               30
D408V7, binary
                  cls
clus                0  1
  CCDC63 MUTATED    2  1
  CCDC63 WILD-TYPE 34 35
[1] "tbl2"
                  cls
clus               [,1] [,2]
  CCDC63 MUTATED      2    1
  CCDC63 WILD-TYPE   34   35
        clus
vv       CCDC63 MUTATED CCDC63 WILD-TYPE
  FEMALE              2               34
  MALE                1               35
                  vv
clus               PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  CCDC63 MUTATED                                     3
  CCDC63 WILD-TYPE                                  62
                  vv
clus               PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  CCDC63 MUTATED                                       0
  CCDC63 WILD-TYPE                                     4
                  vv
clus               PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  CCDC63 MUTATED                                                  0
  CCDC63 WILD-TYPE                                                2
D408V8, multiclass
                                                  clus
vv                                                 CCDC63 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                           3
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                         0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA              0
                                                  clus
vv                                                 CCDC63 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                            62
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                           4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                2
D408V9, continuous
[1] "Remove cluster labels:" "CCDC63 MUTATED"        
clus
  CCDC63 MUTATED CCDC63 WILD-TYPE 
               2               20 
      TCGA-F2-6880       TCGA-FB-A4P5       TCGA-FB-A4P6       TCGA-FB-A5VM 
"CCDC63 WILD-TYPE" "CCDC63 WILD-TYPE" "CCDC63 WILD-TYPE" "CCDC63 WILD-TYPE" 
      TCGA-FB-A78T       TCGA-FB-A7DR       TCGA-H6-8124       TCGA-H6-A45N 
"CCDC63 WILD-TYPE" "CCDC63 WILD-TYPE" "CCDC63 WILD-TYPE" "CCDC63 WILD-TYPE" 
      TCGA-H8-A6C1       TCGA-IB-7644       TCGA-IB-7649       TCGA-IB-7885 
"CCDC63 WILD-TYPE" "CCDC63 WILD-TYPE" "CCDC63 WILD-TYPE" "CCDC63 WILD-TYPE" 
      TCGA-IB-7886       TCGA-IB-7887       TCGA-IB-8126       TCGA-IB-8127 
"CCDC63 WILD-TYPE" "CCDC63 WILD-TYPE" "CCDC63 WILD-TYPE" "CCDC63 WILD-TYPE" 
      TCGA-IB-A5SS       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"CCDC63 WILD-TYPE" "CCDC63 WILD-TYPE" "CCDC63 WILD-TYPE" "CCDC63 WILD-TYPE" 
D408V10, continuous
[1] "Remove cluster labels:" "CCDC63 MUTATED"        
clus
  CCDC63 MUTATED CCDC63 WILD-TYPE 
               2               17 
      TCGA-FB-A4P5       TCGA-FB-A4P6       TCGA-FB-A5VM       TCGA-FB-A78T 
"CCDC63 WILD-TYPE" "CCDC63 WILD-TYPE" "CCDC63 WILD-TYPE" "CCDC63 WILD-TYPE" 
      TCGA-FB-A7DR       TCGA-H6-8124       TCGA-H8-A6C1       TCGA-IB-7644 
"CCDC63 WILD-TYPE" "CCDC63 WILD-TYPE" "CCDC63 WILD-TYPE" "CCDC63 WILD-TYPE" 
      TCGA-IB-7649       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-8126 
"CCDC63 WILD-TYPE" "CCDC63 WILD-TYPE" "CCDC63 WILD-TYPE" "CCDC63 WILD-TYPE" 
      TCGA-IB-8127       TCGA-IB-A5SS       TCGA-IB-A6UG       TCGA-LB-A7SX 
"CCDC63 WILD-TYPE" "CCDC63 WILD-TYPE" "CCDC63 WILD-TYPE" "CCDC63 WILD-TYPE" 
      TCGA-OE-A75W 
"CCDC63 WILD-TYPE" 
                  vv
clus               R0 R1 RX
  CCDC63 MUTATED    3  0  0
  CCDC63 WILD-TYPE 39 24  2
D408V11, multiclass
    clus
vv   CCDC63 MUTATED CCDC63 WILD-TYPE
  R0              3               39
  R1              0               24
  RX              0                2
D408V12, continuous

Clustering(409) Variable = GPR113 MUTATION ANALYSIS
D409V1, survival
                  sevent
clus2               0  1
  GPR113 MUTATED    1  3
  GPR113 WILD-TYPE 39 26
  GPR113 MUTATED GPR113 WILD-TYPE 
               4               65 
  GPR113 MUTATED GPR113 WILD-TYPE 
               3               26 
$`GPR113 MUTATED`
TCGA-HZ-8001 TCGA-IB-7647 TCGA-IB-7651 TCGA-IB-7893 
        0.62        21.90        19.82         3.85 

$`GPR113 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P5 TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR 
        0.13        11.93        12.66         2.47         0.03         5.46 
TCGA-FZ-5920 TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 
        2.01        36.20        20.81        12.89         7.66        13.02 
TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 
        7.89         0.92         0.66         0.13         0.26        12.13 
TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 
       11.87         0.26         0.79         0.69         3.95         0.92 
TCGA-HZ-8317 TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH 
        0.53         0.16         2.99         0.76         0.95         6.38 
TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7649 TCGA-IB-7652 
        1.51        11.41        49.38         4.77        15.35        15.65 
TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 
       27.98         4.04         3.62        43.79        15.81        19.66 
TCGA-IB-7891 TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP 
       16.04        15.98         0.56        17.16        10.82         9.86 
TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W 
        7.20        15.12         0.26         1.35         4.18         3.62 
TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
        8.12        13.68        16.80        14.14        18.67 

  GPR113 MUTATED GPR113 WILD-TYPE 
            0.62             0.03 
  GPR113 MUTATED GPR113 WILD-TYPE 
           21.90            49.38 
  GPR113 MUTATED GPR113 WILD-TYPE 
          11.835            7.660 
[1] "0.6 - 21.9 (11.8)" "0.0 - 49.4 (7.7)" 
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
"GPR113 WILD-TYPE" "GPR113 WILD-TYPE" "GPR113 WILD-TYPE" "GPR113 WILD-TYPE" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"GPR113 WILD-TYPE" "GPR113 WILD-TYPE" "GPR113 WILD-TYPE" "GPR113 WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
"GPR113 WILD-TYPE" "GPR113 WILD-TYPE" "GPR113 WILD-TYPE" "GPR113 WILD-TYPE" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"GPR113 WILD-TYPE" "GPR113 WILD-TYPE" "GPR113 WILD-TYPE" "GPR113 WILD-TYPE" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
"GPR113 WILD-TYPE" "GPR113 WILD-TYPE" "GPR113 WILD-TYPE" "GPR113 WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
"GPR113 WILD-TYPE" "GPR113 WILD-TYPE" "GPR113 WILD-TYPE" "GPR113 WILD-TYPE" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"GPR113 WILD-TYPE" "GPR113 WILD-TYPE"   "GPR113 MUTATED" "GPR113 WILD-TYPE" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
"GPR113 WILD-TYPE" "GPR113 WILD-TYPE" "GPR113 WILD-TYPE" "GPR113 WILD-TYPE" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
"GPR113 WILD-TYPE" "GPR113 WILD-TYPE" "GPR113 WILD-TYPE" "GPR113 WILD-TYPE" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
"GPR113 WILD-TYPE" "GPR113 WILD-TYPE" "GPR113 WILD-TYPE" "GPR113 WILD-TYPE" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
"GPR113 WILD-TYPE"   "GPR113 MUTATED" "GPR113 WILD-TYPE"   "GPR113 MUTATED" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
"GPR113 WILD-TYPE" "GPR113 WILD-TYPE" "GPR113 WILD-TYPE" "GPR113 WILD-TYPE" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
"GPR113 WILD-TYPE" "GPR113 WILD-TYPE" "GPR113 WILD-TYPE" "GPR113 WILD-TYPE" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
  "GPR113 MUTATED" "GPR113 WILD-TYPE" "GPR113 WILD-TYPE" "GPR113 WILD-TYPE" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"GPR113 WILD-TYPE" "GPR113 WILD-TYPE" "GPR113 WILD-TYPE" "GPR113 WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"GPR113 WILD-TYPE" "GPR113 WILD-TYPE" "GPR113 WILD-TYPE" "GPR113 WILD-TYPE" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
"GPR113 WILD-TYPE" "GPR113 WILD-TYPE" "GPR113 WILD-TYPE" "GPR113 WILD-TYPE" 
      TCGA-US-A77J 
"GPR113 WILD-TYPE" 
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
"GPR113 WILD-TYPE" "GPR113 WILD-TYPE" "GPR113 WILD-TYPE" "GPR113 WILD-TYPE" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"GPR113 WILD-TYPE" "GPR113 WILD-TYPE" "GPR113 WILD-TYPE" "GPR113 WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
"GPR113 WILD-TYPE" "GPR113 WILD-TYPE" "GPR113 WILD-TYPE" "GPR113 WILD-TYPE" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"GPR113 WILD-TYPE" "GPR113 WILD-TYPE" "GPR113 WILD-TYPE" "GPR113 WILD-TYPE" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
"GPR113 WILD-TYPE" "GPR113 WILD-TYPE" "GPR113 WILD-TYPE" "GPR113 WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
"GPR113 WILD-TYPE" "GPR113 WILD-TYPE" "GPR113 WILD-TYPE" "GPR113 WILD-TYPE" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"GPR113 WILD-TYPE" "GPR113 WILD-TYPE"   "GPR113 MUTATED" "GPR113 WILD-TYPE" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
"GPR113 WILD-TYPE" "GPR113 WILD-TYPE" "GPR113 WILD-TYPE" "GPR113 WILD-TYPE" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
"GPR113 WILD-TYPE" "GPR113 WILD-TYPE" "GPR113 WILD-TYPE" "GPR113 WILD-TYPE" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
"GPR113 WILD-TYPE" "GPR113 WILD-TYPE" "GPR113 WILD-TYPE" "GPR113 WILD-TYPE" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
"GPR113 WILD-TYPE"   "GPR113 MUTATED" "GPR113 WILD-TYPE"   "GPR113 MUTATED" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
"GPR113 WILD-TYPE" "GPR113 WILD-TYPE" "GPR113 WILD-TYPE" "GPR113 WILD-TYPE" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
"GPR113 WILD-TYPE" "GPR113 WILD-TYPE" "GPR113 WILD-TYPE" "GPR113 WILD-TYPE" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
  "GPR113 MUTATED" "GPR113 WILD-TYPE" "GPR113 WILD-TYPE" "GPR113 WILD-TYPE" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"GPR113 WILD-TYPE" "GPR113 WILD-TYPE" "GPR113 WILD-TYPE" "GPR113 WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"GPR113 WILD-TYPE" "GPR113 WILD-TYPE" "GPR113 WILD-TYPE" "GPR113 WILD-TYPE" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
"GPR113 WILD-TYPE" "GPR113 WILD-TYPE" "GPR113 WILD-TYPE" "GPR113 WILD-TYPE" 
      TCGA-US-A77J 
"GPR113 WILD-TYPE" 
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
"GPR113 WILD-TYPE" "GPR113 WILD-TYPE" "GPR113 WILD-TYPE" "GPR113 WILD-TYPE" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"GPR113 WILD-TYPE" "GPR113 WILD-TYPE" "GPR113 WILD-TYPE" "GPR113 WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
"GPR113 WILD-TYPE" "GPR113 WILD-TYPE" "GPR113 WILD-TYPE" "GPR113 WILD-TYPE" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"GPR113 WILD-TYPE" "GPR113 WILD-TYPE" "GPR113 WILD-TYPE" "GPR113 WILD-TYPE" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
"GPR113 WILD-TYPE" "GPR113 WILD-TYPE" "GPR113 WILD-TYPE" "GPR113 WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
"GPR113 WILD-TYPE" "GPR113 WILD-TYPE" "GPR113 WILD-TYPE" "GPR113 WILD-TYPE" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"GPR113 WILD-TYPE" "GPR113 WILD-TYPE"   "GPR113 MUTATED" "GPR113 WILD-TYPE" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
"GPR113 WILD-TYPE" "GPR113 WILD-TYPE" "GPR113 WILD-TYPE" "GPR113 WILD-TYPE" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
"GPR113 WILD-TYPE" "GPR113 WILD-TYPE" "GPR113 WILD-TYPE" "GPR113 WILD-TYPE" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
"GPR113 WILD-TYPE" "GPR113 WILD-TYPE" "GPR113 WILD-TYPE" "GPR113 WILD-TYPE" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
"GPR113 WILD-TYPE"   "GPR113 MUTATED" "GPR113 WILD-TYPE"   "GPR113 MUTATED" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
"GPR113 WILD-TYPE" "GPR113 WILD-TYPE" "GPR113 WILD-TYPE" "GPR113 WILD-TYPE" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
"GPR113 WILD-TYPE" "GPR113 WILD-TYPE" "GPR113 WILD-TYPE" "GPR113 WILD-TYPE" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
  "GPR113 MUTATED" "GPR113 WILD-TYPE" "GPR113 WILD-TYPE" "GPR113 WILD-TYPE" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"GPR113 WILD-TYPE" "GPR113 WILD-TYPE" "GPR113 WILD-TYPE" "GPR113 WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"GPR113 WILD-TYPE" "GPR113 WILD-TYPE" "GPR113 WILD-TYPE" "GPR113 WILD-TYPE" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
"GPR113 WILD-TYPE" "GPR113 WILD-TYPE" "GPR113 WILD-TYPE" "GPR113 WILD-TYPE" 
      TCGA-US-A77J 
"GPR113 WILD-TYPE" 
[1] "hr=" "1.1"
D409V2, continuous
                  vv
clus               STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  GPR113 MUTATED          0        1         1         2         1        0
  GPR113 WILD-TYPE        1        3        10        49         1        3
D409V3, multiclass
                  vv
clus               T1+T2 T3+T4
  GPR113 MUTATED       1     4
  GPR113 WILD-TYPE     5    62
D409V4, multiclass
       clus
vv      GPR113 MUTATED GPR113 WILD-TYPE
  T1+T2              1                5
  T3+T4              4               62
D409V5, binary
                  cls
clus                0  1
  GPR113 MUTATED    3  2
  GPR113 WILD-TYPE 14 52
[1] "tbl2"
                  cls
clus               [,1] [,2]
  GPR113 MUTATED      3    2
  GPR113 WILD-TYPE   14   52
   clus
vv  GPR113 MUTATED GPR113 WILD-TYPE
  0              3               14
  1              2               52
                  vv
clus               M0 M1 MX
  GPR113 MUTATED    3  0  2
  GPR113 WILD-TYPE 36  3 28
D409V6, multiclass
    clus
vv   GPR113 MUTATED GPR113 WILD-TYPE
  M0              3               36
  M1              0                3
  MX              2               28
D409V7, binary
                  cls
clus                0  1
  GPR113 MUTATED    2  3
  GPR113 WILD-TYPE 34 33
[1] "tbl2"
                  cls
clus               [,1] [,2]
  GPR113 MUTATED      2    3
  GPR113 WILD-TYPE   34   33
        clus
vv       GPR113 MUTATED GPR113 WILD-TYPE
  FEMALE              2               34
  MALE                3               33
                  vv
clus               PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  GPR113 MUTATED                                     5
  GPR113 WILD-TYPE                                  60
                  vv
clus               PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  GPR113 MUTATED                                       0
  GPR113 WILD-TYPE                                     4
                  vv
clus               PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  GPR113 MUTATED                                                  0
  GPR113 WILD-TYPE                                                2
D409V8, multiclass
                                                  clus
vv                                                 GPR113 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                           5
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                         0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA              0
                                                  clus
vv                                                 GPR113 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                            60
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                           4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                2
D409V9, continuous
[1] "Remove cluster labels:" "GPR113 MUTATED"        
clus
  GPR113 MUTATED GPR113 WILD-TYPE 
               1               21 
      TCGA-F2-6880       TCGA-FB-A4P5       TCGA-FB-A4P6       TCGA-FB-A5VM 
"GPR113 WILD-TYPE" "GPR113 WILD-TYPE" "GPR113 WILD-TYPE" "GPR113 WILD-TYPE" 
      TCGA-FB-A78T       TCGA-FB-A7DR       TCGA-H6-8124       TCGA-H6-A45N 
"GPR113 WILD-TYPE" "GPR113 WILD-TYPE" "GPR113 WILD-TYPE" "GPR113 WILD-TYPE" 
      TCGA-H8-A6C1       TCGA-IB-7644       TCGA-IB-7649       TCGA-IB-7885 
"GPR113 WILD-TYPE" "GPR113 WILD-TYPE" "GPR113 WILD-TYPE" "GPR113 WILD-TYPE" 
      TCGA-IB-7886       TCGA-IB-7887       TCGA-IB-7891       TCGA-IB-8126 
"GPR113 WILD-TYPE" "GPR113 WILD-TYPE" "GPR113 WILD-TYPE" "GPR113 WILD-TYPE" 
      TCGA-IB-8127       TCGA-IB-A5SS       TCGA-IB-A6UG       TCGA-LB-A7SX 
"GPR113 WILD-TYPE" "GPR113 WILD-TYPE" "GPR113 WILD-TYPE" "GPR113 WILD-TYPE" 
      TCGA-OE-A75W 
"GPR113 WILD-TYPE" 
D409V10, continuous
[1] "Remove cluster labels:" "GPR113 MUTATED"        
clus
  GPR113 MUTATED GPR113 WILD-TYPE 
               1               18 
      TCGA-FB-A4P5       TCGA-FB-A4P6       TCGA-FB-A5VM       TCGA-FB-A78T 
"GPR113 WILD-TYPE" "GPR113 WILD-TYPE" "GPR113 WILD-TYPE" "GPR113 WILD-TYPE" 
      TCGA-FB-A7DR       TCGA-H6-8124       TCGA-H8-A6C1       TCGA-IB-7644 
"GPR113 WILD-TYPE" "GPR113 WILD-TYPE" "GPR113 WILD-TYPE" "GPR113 WILD-TYPE" 
      TCGA-IB-7649       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7891 
"GPR113 WILD-TYPE" "GPR113 WILD-TYPE" "GPR113 WILD-TYPE" "GPR113 WILD-TYPE" 
      TCGA-IB-8126       TCGA-IB-8127       TCGA-IB-A5SS       TCGA-IB-A6UG 
"GPR113 WILD-TYPE" "GPR113 WILD-TYPE" "GPR113 WILD-TYPE" "GPR113 WILD-TYPE" 
      TCGA-LB-A7SX       TCGA-OE-A75W 
"GPR113 WILD-TYPE" "GPR113 WILD-TYPE" 
                  vv
clus               R0 R1 RX
  GPR113 MUTATED    4  1  0
  GPR113 WILD-TYPE 38 23  2
D409V11, multiclass
    clus
vv   GPR113 MUTATED GPR113 WILD-TYPE
  R0              4               38
  R1              1               23
  RX              0                2
D409V12, continuous

Clustering(410) Variable = EPHX1 MUTATION ANALYSIS
D410V1, survival
                 sevent
clus2              0  1
  EPHX1 MUTATED    1  3
  EPHX1 WILD-TYPE 39 26
  EPHX1 MUTATED EPHX1 WILD-TYPE 
              4              65 
  EPHX1 MUTATED EPHX1 WILD-TYPE 
              3              26 
$`EPHX1 MUTATED`
TCGA-H6-8124 TCGA-IB-7645 TCGA-IB-7651 TCGA-IB-7888 
       12.89        49.38        19.82        43.79 

$`EPHX1 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P5 TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR 
        0.13        11.93        12.66         2.47         0.03         5.46 
TCGA-FZ-5920 TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7289 
        2.01        36.20        20.81         7.66        13.02         7.89 
TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 
        0.92         0.66         0.13         0.26        12.13        11.87 
TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 
        0.26         0.62         0.79         0.69         3.95         0.92 
TCGA-HZ-8317 TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH 
        0.53         0.16         2.99         0.76         0.95         6.38 
TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7652 
        1.51        11.41         4.77        21.90        15.35        15.65 
TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 
       27.98         4.04         3.62        15.81        19.66        16.04 
TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP 
        3.85        15.98         0.56        17.16        10.82         9.86 
TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W 
        7.20        15.12         0.26         1.35         4.18         3.62 
TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
        8.12        13.68        16.80        14.14        18.67 

  EPHX1 MUTATED EPHX1 WILD-TYPE 
          12.89            0.03 
  EPHX1 MUTATED EPHX1 WILD-TYPE 
          49.38           36.20 
  EPHX1 MUTATED EPHX1 WILD-TYPE 
         31.805           7.100 
[1] "12.9 - 49.4 (31.8)" "0.0 - 36.2 (7.1)"  
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"EPHX1 WILD-TYPE" "EPHX1 WILD-TYPE" "EPHX1 WILD-TYPE" "EPHX1 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"EPHX1 WILD-TYPE" "EPHX1 WILD-TYPE" "EPHX1 WILD-TYPE" "EPHX1 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"EPHX1 WILD-TYPE" "EPHX1 WILD-TYPE" "EPHX1 WILD-TYPE" "EPHX1 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"EPHX1 WILD-TYPE" "EPHX1 WILD-TYPE" "EPHX1 WILD-TYPE"   "EPHX1 MUTATED" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"EPHX1 WILD-TYPE" "EPHX1 WILD-TYPE" "EPHX1 WILD-TYPE" "EPHX1 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"EPHX1 WILD-TYPE" "EPHX1 WILD-TYPE" "EPHX1 WILD-TYPE" "EPHX1 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"EPHX1 WILD-TYPE" "EPHX1 WILD-TYPE" "EPHX1 WILD-TYPE" "EPHX1 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"EPHX1 WILD-TYPE" "EPHX1 WILD-TYPE" "EPHX1 WILD-TYPE" "EPHX1 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"EPHX1 WILD-TYPE" "EPHX1 WILD-TYPE" "EPHX1 WILD-TYPE" "EPHX1 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"EPHX1 WILD-TYPE" "EPHX1 WILD-TYPE" "EPHX1 WILD-TYPE"   "EPHX1 MUTATED" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"EPHX1 WILD-TYPE" "EPHX1 WILD-TYPE" "EPHX1 WILD-TYPE"   "EPHX1 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"EPHX1 WILD-TYPE" "EPHX1 WILD-TYPE" "EPHX1 WILD-TYPE" "EPHX1 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
  "EPHX1 MUTATED" "EPHX1 WILD-TYPE" "EPHX1 WILD-TYPE" "EPHX1 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"EPHX1 WILD-TYPE" "EPHX1 WILD-TYPE" "EPHX1 WILD-TYPE" "EPHX1 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"EPHX1 WILD-TYPE" "EPHX1 WILD-TYPE" "EPHX1 WILD-TYPE" "EPHX1 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"EPHX1 WILD-TYPE" "EPHX1 WILD-TYPE" "EPHX1 WILD-TYPE" "EPHX1 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"EPHX1 WILD-TYPE" "EPHX1 WILD-TYPE" "EPHX1 WILD-TYPE" "EPHX1 WILD-TYPE" 
     TCGA-US-A77J 
"EPHX1 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"EPHX1 WILD-TYPE" "EPHX1 WILD-TYPE" "EPHX1 WILD-TYPE" "EPHX1 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"EPHX1 WILD-TYPE" "EPHX1 WILD-TYPE" "EPHX1 WILD-TYPE" "EPHX1 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"EPHX1 WILD-TYPE" "EPHX1 WILD-TYPE" "EPHX1 WILD-TYPE" "EPHX1 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"EPHX1 WILD-TYPE" "EPHX1 WILD-TYPE" "EPHX1 WILD-TYPE"   "EPHX1 MUTATED" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"EPHX1 WILD-TYPE" "EPHX1 WILD-TYPE" "EPHX1 WILD-TYPE" "EPHX1 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"EPHX1 WILD-TYPE" "EPHX1 WILD-TYPE" "EPHX1 WILD-TYPE" "EPHX1 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"EPHX1 WILD-TYPE" "EPHX1 WILD-TYPE" "EPHX1 WILD-TYPE" "EPHX1 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"EPHX1 WILD-TYPE" "EPHX1 WILD-TYPE" "EPHX1 WILD-TYPE" "EPHX1 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"EPHX1 WILD-TYPE" "EPHX1 WILD-TYPE" "EPHX1 WILD-TYPE" "EPHX1 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"EPHX1 WILD-TYPE" "EPHX1 WILD-TYPE" "EPHX1 WILD-TYPE"   "EPHX1 MUTATED" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"EPHX1 WILD-TYPE" "EPHX1 WILD-TYPE" "EPHX1 WILD-TYPE"   "EPHX1 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"EPHX1 WILD-TYPE" "EPHX1 WILD-TYPE" "EPHX1 WILD-TYPE" "EPHX1 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
  "EPHX1 MUTATED" "EPHX1 WILD-TYPE" "EPHX1 WILD-TYPE" "EPHX1 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"EPHX1 WILD-TYPE" "EPHX1 WILD-TYPE" "EPHX1 WILD-TYPE" "EPHX1 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"EPHX1 WILD-TYPE" "EPHX1 WILD-TYPE" "EPHX1 WILD-TYPE" "EPHX1 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"EPHX1 WILD-TYPE" "EPHX1 WILD-TYPE" "EPHX1 WILD-TYPE" "EPHX1 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"EPHX1 WILD-TYPE" "EPHX1 WILD-TYPE" "EPHX1 WILD-TYPE" "EPHX1 WILD-TYPE" 
     TCGA-US-A77J 
"EPHX1 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"EPHX1 WILD-TYPE" "EPHX1 WILD-TYPE" "EPHX1 WILD-TYPE" "EPHX1 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"EPHX1 WILD-TYPE" "EPHX1 WILD-TYPE" "EPHX1 WILD-TYPE" "EPHX1 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"EPHX1 WILD-TYPE" "EPHX1 WILD-TYPE" "EPHX1 WILD-TYPE" "EPHX1 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"EPHX1 WILD-TYPE" "EPHX1 WILD-TYPE" "EPHX1 WILD-TYPE"   "EPHX1 MUTATED" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"EPHX1 WILD-TYPE" "EPHX1 WILD-TYPE" "EPHX1 WILD-TYPE" "EPHX1 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"EPHX1 WILD-TYPE" "EPHX1 WILD-TYPE" "EPHX1 WILD-TYPE" "EPHX1 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"EPHX1 WILD-TYPE" "EPHX1 WILD-TYPE" "EPHX1 WILD-TYPE" "EPHX1 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"EPHX1 WILD-TYPE" "EPHX1 WILD-TYPE" "EPHX1 WILD-TYPE" "EPHX1 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"EPHX1 WILD-TYPE" "EPHX1 WILD-TYPE" "EPHX1 WILD-TYPE" "EPHX1 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"EPHX1 WILD-TYPE" "EPHX1 WILD-TYPE" "EPHX1 WILD-TYPE"   "EPHX1 MUTATED" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"EPHX1 WILD-TYPE" "EPHX1 WILD-TYPE" "EPHX1 WILD-TYPE"   "EPHX1 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"EPHX1 WILD-TYPE" "EPHX1 WILD-TYPE" "EPHX1 WILD-TYPE" "EPHX1 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
  "EPHX1 MUTATED" "EPHX1 WILD-TYPE" "EPHX1 WILD-TYPE" "EPHX1 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"EPHX1 WILD-TYPE" "EPHX1 WILD-TYPE" "EPHX1 WILD-TYPE" "EPHX1 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"EPHX1 WILD-TYPE" "EPHX1 WILD-TYPE" "EPHX1 WILD-TYPE" "EPHX1 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"EPHX1 WILD-TYPE" "EPHX1 WILD-TYPE" "EPHX1 WILD-TYPE" "EPHX1 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"EPHX1 WILD-TYPE" "EPHX1 WILD-TYPE" "EPHX1 WILD-TYPE" "EPHX1 WILD-TYPE" 
     TCGA-US-A77J 
"EPHX1 WILD-TYPE" 
[1] "hr=" "7.4"
D410V2, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  EPHX1 MUTATED          0        0         1         3         0        0
  EPHX1 WILD-TYPE        1        4        10        48         2        3
D410V3, multiclass
                 vv
clus              T1+T2 T3+T4
  EPHX1 MUTATED       0     4
  EPHX1 WILD-TYPE     6    62
D410V4, multiclass
       clus
vv      EPHX1 MUTATED EPHX1 WILD-TYPE
  T1+T2             0               6
  T3+T4             4              62
D410V5, binary
                 cls
clus               0  1
  EPHX1 MUTATED    1  3
  EPHX1 WILD-TYPE 16 51
[1] "tbl2"
                 cls
clus              [,1] [,2]
  EPHX1 MUTATED      1    3
  EPHX1 WILD-TYPE   16   51
   clus
vv  EPHX1 MUTATED EPHX1 WILD-TYPE
  0             1              16
  1             3              51
                 vv
clus              M0 M1 MX
  EPHX1 MUTATED    4  0  0
  EPHX1 WILD-TYPE 35  3 30
D410V6, multiclass
    clus
vv   EPHX1 MUTATED EPHX1 WILD-TYPE
  M0             4              35
  M1             0               3
  MX             0              30
D410V7, binary
                 cls
clus               0  1
  EPHX1 MUTATED    4  0
  EPHX1 WILD-TYPE 32 36
[1] "tbl2"
                 cls
clus              [,1] [,2]
  EPHX1 MUTATED      4    0
  EPHX1 WILD-TYPE   32   36
        clus
vv       EPHX1 MUTATED EPHX1 WILD-TYPE
  FEMALE             4              32
  MALE               0              36
                 vv
clus              PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  EPHX1 MUTATED                                     4
  EPHX1 WILD-TYPE                                  61
                 vv
clus              PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  EPHX1 MUTATED                                       0
  EPHX1 WILD-TYPE                                     4
                 vv
clus              PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  EPHX1 MUTATED                                                  0
  EPHX1 WILD-TYPE                                                2
D410V8, multiclass
                                                  clus
vv                                                 EPHX1 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                          4
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                        0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA             0
                                                  clus
vv                                                 EPHX1 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                           61
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                          4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA               2
D410V9, continuous
[1] "Remove cluster labels:" "EPHX1 MUTATED"         
clus
  EPHX1 MUTATED EPHX1 WILD-TYPE 
              2              20 
     TCGA-F2-6880      TCGA-FB-A4P5      TCGA-FB-A4P6      TCGA-FB-A5VM 
"EPHX1 WILD-TYPE" "EPHX1 WILD-TYPE" "EPHX1 WILD-TYPE" "EPHX1 WILD-TYPE" 
     TCGA-FB-A78T      TCGA-FB-A7DR      TCGA-H6-A45N      TCGA-H8-A6C1 
"EPHX1 WILD-TYPE" "EPHX1 WILD-TYPE" "EPHX1 WILD-TYPE" "EPHX1 WILD-TYPE" 
     TCGA-IB-7644      TCGA-IB-7649      TCGA-IB-7885      TCGA-IB-7886 
"EPHX1 WILD-TYPE" "EPHX1 WILD-TYPE" "EPHX1 WILD-TYPE" "EPHX1 WILD-TYPE" 
     TCGA-IB-7887      TCGA-IB-7891      TCGA-IB-8126      TCGA-IB-8127 
"EPHX1 WILD-TYPE" "EPHX1 WILD-TYPE" "EPHX1 WILD-TYPE" "EPHX1 WILD-TYPE" 
     TCGA-IB-A5SS      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"EPHX1 WILD-TYPE" "EPHX1 WILD-TYPE" "EPHX1 WILD-TYPE" "EPHX1 WILD-TYPE" 
D410V10, continuous
[1] "Remove cluster labels:" "EPHX1 MUTATED"         
clus
  EPHX1 MUTATED EPHX1 WILD-TYPE 
              2              17 
     TCGA-FB-A4P5      TCGA-FB-A4P6      TCGA-FB-A5VM      TCGA-FB-A78T 
"EPHX1 WILD-TYPE" "EPHX1 WILD-TYPE" "EPHX1 WILD-TYPE" "EPHX1 WILD-TYPE" 
     TCGA-FB-A7DR      TCGA-H8-A6C1      TCGA-IB-7644      TCGA-IB-7649 
"EPHX1 WILD-TYPE" "EPHX1 WILD-TYPE" "EPHX1 WILD-TYPE" "EPHX1 WILD-TYPE" 
     TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7891      TCGA-IB-8126 
"EPHX1 WILD-TYPE" "EPHX1 WILD-TYPE" "EPHX1 WILD-TYPE" "EPHX1 WILD-TYPE" 
     TCGA-IB-8127      TCGA-IB-A5SS      TCGA-IB-A6UG      TCGA-LB-A7SX 
"EPHX1 WILD-TYPE" "EPHX1 WILD-TYPE" "EPHX1 WILD-TYPE" "EPHX1 WILD-TYPE" 
     TCGA-OE-A75W 
"EPHX1 WILD-TYPE" 
                 vv
clus              R0 R1 RX
  EPHX1 MUTATED    4  0  0
  EPHX1 WILD-TYPE 38 24  2
D410V11, multiclass
    clus
vv   EPHX1 MUTATED EPHX1 WILD-TYPE
  R0             4              38
  R1             0              24
  RX             0               2
D410V12, continuous

Clustering(411) Variable = ZNF878 MUTATION ANALYSIS
D411V1, survival
                  sevent
clus2               0  1
  ZNF878 MUTATED    2  2
  ZNF878 WILD-TYPE 38 27
  ZNF878 MUTATED ZNF878 WILD-TYPE 
               4               65 
  ZNF878 MUTATED ZNF878 WILD-TYPE 
               2               27 
$`ZNF878 MUTATED`
TCGA-H8-A6C1 TCGA-IB-7651 TCGA-IB-7888 TCGA-PZ-A5RE 
       13.02        19.82        43.79         8.12 

$`ZNF878 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P5 TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR 
        0.13        11.93        12.66         2.47         0.03         5.46 
TCGA-FZ-5920 TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-HZ-7289 
        2.01        36.20        20.81        12.89         7.66         7.89 
TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 
        0.92         0.66         0.13         0.26        12.13        11.87 
TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 
        0.26         0.62         0.79         0.69         3.95         0.92 
TCGA-HZ-8317 TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH 
        0.53         0.16         2.99         0.76         0.95         6.38 
TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 
        1.51        11.41        49.38         4.77        21.90        15.35 
TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7889 TCGA-IB-7890 
       15.65        27.98         4.04         3.62        15.81        19.66 
TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO 
       16.04         3.85        15.98         0.56        17.16        10.82 
TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX 
        9.86         7.20        15.12         0.26         1.35         4.18 
TCGA-OE-A75W TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
        3.62        13.68        16.80        14.14        18.67 

  ZNF878 MUTATED ZNF878 WILD-TYPE 
            8.12             0.03 
  ZNF878 MUTATED ZNF878 WILD-TYPE 
           43.79            49.38 
  ZNF878 MUTATED ZNF878 WILD-TYPE 
           16.42             7.10 
[1] "8.1 - 43.8 (16.4)" "0.0 - 49.4 (7.1)" 
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
"ZNF878 WILD-TYPE"   "ZNF878 MUTATED" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE"   "ZNF878 MUTATED" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
  "ZNF878 MUTATED" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
  "ZNF878 MUTATED" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-US-A77J 
"ZNF878 WILD-TYPE" 
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
"ZNF878 WILD-TYPE"   "ZNF878 MUTATED" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE"   "ZNF878 MUTATED" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
  "ZNF878 MUTATED" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
  "ZNF878 MUTATED" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-US-A77J 
"ZNF878 WILD-TYPE" 
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
"ZNF878 WILD-TYPE"   "ZNF878 MUTATED" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE"   "ZNF878 MUTATED" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
  "ZNF878 MUTATED" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
  "ZNF878 MUTATED" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-US-A77J 
"ZNF878 WILD-TYPE" 
[1] "hr=" "2.4"
D411V2, continuous
                  vv
clus               STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  ZNF878 MUTATED          0        0         2         2         0        0
  ZNF878 WILD-TYPE        1        4         9        49         2        3
D411V3, multiclass
                  vv
clus               T1+T2 T3+T4
  ZNF878 MUTATED       0     4
  ZNF878 WILD-TYPE     6    62
D411V4, multiclass
       clus
vv      ZNF878 MUTATED ZNF878 WILD-TYPE
  T1+T2              0                6
  T3+T4              4               62
D411V5, binary
                  cls
clus                0  1
  ZNF878 MUTATED    2  2
  ZNF878 WILD-TYPE 15 52
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ZNF878 MUTATED      2    2
  ZNF878 WILD-TYPE   15   52
   clus
vv  ZNF878 MUTATED ZNF878 WILD-TYPE
  0              2               15
  1              2               52
                  vv
clus               M0 M1 MX
  ZNF878 MUTATED    2  0  2
  ZNF878 WILD-TYPE 37  3 28
D411V6, multiclass
    clus
vv   ZNF878 MUTATED ZNF878 WILD-TYPE
  M0              2               37
  M1              0                3
  MX              2               28
D411V7, binary
                  cls
clus                0  1
  ZNF878 MUTATED    3  1
  ZNF878 WILD-TYPE 33 35
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ZNF878 MUTATED      3    1
  ZNF878 WILD-TYPE   33   35
        clus
vv       ZNF878 MUTATED ZNF878 WILD-TYPE
  FEMALE              3               33
  MALE                1               35
                  vv
clus               PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  ZNF878 MUTATED                                     3
  ZNF878 WILD-TYPE                                  62
                  vv
clus               PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  ZNF878 MUTATED                                       1
  ZNF878 WILD-TYPE                                     3
                  vv
clus               PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  ZNF878 MUTATED                                                  0
  ZNF878 WILD-TYPE                                                2
D411V8, multiclass
                                                  clus
vv                                                 ZNF878 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                           3
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                         1
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA              0
                                                  clus
vv                                                 ZNF878 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                            62
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                           3
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                2
D411V9, continuous
[1] "Remove cluster labels:" "ZNF878 MUTATED"        
clus
  ZNF878 MUTATED ZNF878 WILD-TYPE 
               2               20 
      TCGA-F2-6880       TCGA-FB-A4P5       TCGA-FB-A4P6       TCGA-FB-A5VM 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-FB-A78T       TCGA-FB-A7DR       TCGA-H6-8124       TCGA-H6-A45N 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-IB-7644       TCGA-IB-7649       TCGA-IB-7885       TCGA-IB-7886 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-IB-7887       TCGA-IB-7891       TCGA-IB-8126       TCGA-IB-8127 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-IB-A5SS       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
D411V10, continuous
[1] "Remove cluster labels:" "ZNF878 MUTATED"        
clus
  ZNF878 MUTATED ZNF878 WILD-TYPE 
               2               17 
      TCGA-FB-A4P5       TCGA-FB-A4P6       TCGA-FB-A5VM       TCGA-FB-A78T 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-FB-A7DR       TCGA-H6-8124       TCGA-IB-7644       TCGA-IB-7649 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7891       TCGA-IB-8126 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-IB-8127       TCGA-IB-A5SS       TCGA-IB-A6UG       TCGA-LB-A7SX 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-OE-A75W 
"ZNF878 WILD-TYPE" 
                  vv
clus               R0 R1 RX
  ZNF878 MUTATED    3  0  0
  ZNF878 WILD-TYPE 39 24  2
D411V11, multiclass
    clus
vv   ZNF878 MUTATED ZNF878 WILD-TYPE
  R0              3               39
  R1              0               24
  RX              0                2
D411V12, continuous

Clustering(412) Variable = KLC3 MUTATION ANALYSIS
D412V1, survival
                sevent
clus2             0  1
  KLC3 MUTATED    1  2
  KLC3 WILD-TYPE 39 27
  KLC3 MUTATED KLC3 WILD-TYPE 
             3             66 
  KLC3 MUTATED KLC3 WILD-TYPE 
             2             27 
$`KLC3 MUTATED`
TCGA-HZ-8001 TCGA-IB-7647 TCGA-IB-7897 
        0.62        21.90        15.98 

$`KLC3 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P5 TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR 
        0.13        11.93        12.66         2.47         0.03         5.46 
TCGA-FZ-5920 TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 
        2.01        36.20        20.81        12.89         7.66        13.02 
TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 
        7.89         0.92         0.66         0.13         0.26        12.13 
TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 
       11.87         0.26         0.79         0.69         3.95         0.92 
TCGA-HZ-8317 TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH 
        0.53         0.16         2.99         0.76         0.95         6.38 
TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7649 TCGA-IB-7651 
        1.51        11.41        49.38         4.77        15.35        19.82 
TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 
       15.65        27.98         4.04         3.62        43.79        15.81 
TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO 
       19.66        16.04         3.85         0.56        17.16        10.82 
TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX 
        9.86         7.20        15.12         0.26         1.35         4.18 
TCGA-OE-A75W TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
        3.62         8.12        13.68        16.80        14.14        18.67 

  KLC3 MUTATED KLC3 WILD-TYPE 
          0.62           0.03 
  KLC3 MUTATED KLC3 WILD-TYPE 
         21.90          49.38 
  KLC3 MUTATED KLC3 WILD-TYPE 
         15.98           7.43 
[1] "0.6 - 21.9 (16.0)" "0.0 - 49.4 (7.4)" 
    TCGA-F2-6879     TCGA-F2-6880     TCGA-F2-7273     TCGA-F2-7276 
"KLC3 WILD-TYPE" "KLC3 WILD-TYPE" "KLC3 WILD-TYPE" "KLC3 WILD-TYPE" 
    TCGA-F2-A44G     TCGA-F2-A44H     TCGA-FB-A4P5     TCGA-FB-A4P6 
"KLC3 WILD-TYPE" "KLC3 WILD-TYPE" "KLC3 WILD-TYPE" "KLC3 WILD-TYPE" 
    TCGA-FB-A545     TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-FB-A7DR 
"KLC3 WILD-TYPE" "KLC3 WILD-TYPE" "KLC3 WILD-TYPE" "KLC3 WILD-TYPE" 
    TCGA-FZ-5920     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-H6-8124 
"KLC3 WILD-TYPE" "KLC3 WILD-TYPE" "KLC3 WILD-TYPE" "KLC3 WILD-TYPE" 
    TCGA-H6-A45N     TCGA-H8-A6C1     TCGA-HZ-7289     TCGA-HZ-7918 
"KLC3 WILD-TYPE" "KLC3 WILD-TYPE" "KLC3 WILD-TYPE" "KLC3 WILD-TYPE" 
    TCGA-HZ-7919     TCGA-HZ-7922     TCGA-HZ-7923     TCGA-HZ-7924 
"KLC3 WILD-TYPE" "KLC3 WILD-TYPE" "KLC3 WILD-TYPE" "KLC3 WILD-TYPE" 
    TCGA-HZ-7925     TCGA-HZ-7926     TCGA-HZ-8001     TCGA-HZ-8002 
"KLC3 WILD-TYPE" "KLC3 WILD-TYPE"   "KLC3 MUTATED" "KLC3 WILD-TYPE" 
    TCGA-HZ-8003     TCGA-HZ-8005     TCGA-HZ-8315     TCGA-HZ-8317 
"KLC3 WILD-TYPE" "KLC3 WILD-TYPE" "KLC3 WILD-TYPE" "KLC3 WILD-TYPE" 
    TCGA-HZ-8636     TCGA-HZ-8638     TCGA-HZ-A49G     TCGA-HZ-A49H 
"KLC3 WILD-TYPE" "KLC3 WILD-TYPE" "KLC3 WILD-TYPE" "KLC3 WILD-TYPE" 
    TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-IB-7644     TCGA-IB-7645 
"KLC3 WILD-TYPE" "KLC3 WILD-TYPE" "KLC3 WILD-TYPE" "KLC3 WILD-TYPE" 
    TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7651 
"KLC3 WILD-TYPE"   "KLC3 MUTATED" "KLC3 WILD-TYPE" "KLC3 WILD-TYPE" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887 
"KLC3 WILD-TYPE" "KLC3 WILD-TYPE" "KLC3 WILD-TYPE" "KLC3 WILD-TYPE" 
    TCGA-IB-7888     TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891 
"KLC3 WILD-TYPE" "KLC3 WILD-TYPE" "KLC3 WILD-TYPE" "KLC3 WILD-TYPE" 
    TCGA-IB-7893     TCGA-IB-7897     TCGA-IB-8126     TCGA-IB-8127 
"KLC3 WILD-TYPE"   "KLC3 MUTATED" "KLC3 WILD-TYPE" "KLC3 WILD-TYPE" 
    TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS 
"KLC3 WILD-TYPE" "KLC3 WILD-TYPE" "KLC3 WILD-TYPE" "KLC3 WILD-TYPE" 
    TCGA-IB-A5ST     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
"KLC3 WILD-TYPE" "KLC3 WILD-TYPE" "KLC3 WILD-TYPE" "KLC3 WILD-TYPE" 
    TCGA-PZ-A5RE     TCGA-Q3-A5QY     TCGA-US-A779     TCGA-US-A77E 
"KLC3 WILD-TYPE" "KLC3 WILD-TYPE" "KLC3 WILD-TYPE" "KLC3 WILD-TYPE" 
    TCGA-US-A77J 
"KLC3 WILD-TYPE" 
    TCGA-F2-6879     TCGA-F2-6880     TCGA-F2-7273     TCGA-F2-7276 
"KLC3 WILD-TYPE" "KLC3 WILD-TYPE" "KLC3 WILD-TYPE" "KLC3 WILD-TYPE" 
    TCGA-F2-A44G     TCGA-F2-A44H     TCGA-FB-A4P5     TCGA-FB-A4P6 
"KLC3 WILD-TYPE" "KLC3 WILD-TYPE" "KLC3 WILD-TYPE" "KLC3 WILD-TYPE" 
    TCGA-FB-A545     TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-FB-A7DR 
"KLC3 WILD-TYPE" "KLC3 WILD-TYPE" "KLC3 WILD-TYPE" "KLC3 WILD-TYPE" 
    TCGA-FZ-5920     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-H6-8124 
"KLC3 WILD-TYPE" "KLC3 WILD-TYPE" "KLC3 WILD-TYPE" "KLC3 WILD-TYPE" 
    TCGA-H6-A45N     TCGA-H8-A6C1     TCGA-HZ-7289     TCGA-HZ-7918 
"KLC3 WILD-TYPE" "KLC3 WILD-TYPE" "KLC3 WILD-TYPE" "KLC3 WILD-TYPE" 
    TCGA-HZ-7919     TCGA-HZ-7922     TCGA-HZ-7923     TCGA-HZ-7924 
"KLC3 WILD-TYPE" "KLC3 WILD-TYPE" "KLC3 WILD-TYPE" "KLC3 WILD-TYPE" 
    TCGA-HZ-7925     TCGA-HZ-7926     TCGA-HZ-8001     TCGA-HZ-8002 
"KLC3 WILD-TYPE" "KLC3 WILD-TYPE"   "KLC3 MUTATED" "KLC3 WILD-TYPE" 
    TCGA-HZ-8003     TCGA-HZ-8005     TCGA-HZ-8315     TCGA-HZ-8317 
"KLC3 WILD-TYPE" "KLC3 WILD-TYPE" "KLC3 WILD-TYPE" "KLC3 WILD-TYPE" 
    TCGA-HZ-8636     TCGA-HZ-8638     TCGA-HZ-A49G     TCGA-HZ-A49H 
"KLC3 WILD-TYPE" "KLC3 WILD-TYPE" "KLC3 WILD-TYPE" "KLC3 WILD-TYPE" 
    TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-IB-7644     TCGA-IB-7645 
"KLC3 WILD-TYPE" "KLC3 WILD-TYPE" "KLC3 WILD-TYPE" "KLC3 WILD-TYPE" 
    TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7651 
"KLC3 WILD-TYPE"   "KLC3 MUTATED" "KLC3 WILD-TYPE" "KLC3 WILD-TYPE" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887 
"KLC3 WILD-TYPE" "KLC3 WILD-TYPE" "KLC3 WILD-TYPE" "KLC3 WILD-TYPE" 
    TCGA-IB-7888     TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891 
"KLC3 WILD-TYPE" "KLC3 WILD-TYPE" "KLC3 WILD-TYPE" "KLC3 WILD-TYPE" 
    TCGA-IB-7893     TCGA-IB-7897     TCGA-IB-8126     TCGA-IB-8127 
"KLC3 WILD-TYPE"   "KLC3 MUTATED" "KLC3 WILD-TYPE" "KLC3 WILD-TYPE" 
    TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS 
"KLC3 WILD-TYPE" "KLC3 WILD-TYPE" "KLC3 WILD-TYPE" "KLC3 WILD-TYPE" 
    TCGA-IB-A5ST     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
"KLC3 WILD-TYPE" "KLC3 WILD-TYPE" "KLC3 WILD-TYPE" "KLC3 WILD-TYPE" 
    TCGA-PZ-A5RE     TCGA-Q3-A5QY     TCGA-US-A779     TCGA-US-A77E 
"KLC3 WILD-TYPE" "KLC3 WILD-TYPE" "KLC3 WILD-TYPE" "KLC3 WILD-TYPE" 
    TCGA-US-A77J 
"KLC3 WILD-TYPE" 
    TCGA-F2-6879     TCGA-F2-6880     TCGA-F2-7273     TCGA-F2-7276 
"KLC3 WILD-TYPE" "KLC3 WILD-TYPE" "KLC3 WILD-TYPE" "KLC3 WILD-TYPE" 
    TCGA-F2-A44G     TCGA-F2-A44H     TCGA-FB-A4P5     TCGA-FB-A4P6 
"KLC3 WILD-TYPE" "KLC3 WILD-TYPE" "KLC3 WILD-TYPE" "KLC3 WILD-TYPE" 
    TCGA-FB-A545     TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-FB-A7DR 
"KLC3 WILD-TYPE" "KLC3 WILD-TYPE" "KLC3 WILD-TYPE" "KLC3 WILD-TYPE" 
    TCGA-FZ-5920     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-H6-8124 
"KLC3 WILD-TYPE" "KLC3 WILD-TYPE" "KLC3 WILD-TYPE" "KLC3 WILD-TYPE" 
    TCGA-H6-A45N     TCGA-H8-A6C1     TCGA-HZ-7289     TCGA-HZ-7918 
"KLC3 WILD-TYPE" "KLC3 WILD-TYPE" "KLC3 WILD-TYPE" "KLC3 WILD-TYPE" 
    TCGA-HZ-7919     TCGA-HZ-7922     TCGA-HZ-7923     TCGA-HZ-7924 
"KLC3 WILD-TYPE" "KLC3 WILD-TYPE" "KLC3 WILD-TYPE" "KLC3 WILD-TYPE" 
    TCGA-HZ-7925     TCGA-HZ-7926     TCGA-HZ-8001     TCGA-HZ-8002 
"KLC3 WILD-TYPE" "KLC3 WILD-TYPE"   "KLC3 MUTATED" "KLC3 WILD-TYPE" 
    TCGA-HZ-8003     TCGA-HZ-8005     TCGA-HZ-8315     TCGA-HZ-8317 
"KLC3 WILD-TYPE" "KLC3 WILD-TYPE" "KLC3 WILD-TYPE" "KLC3 WILD-TYPE" 
    TCGA-HZ-8636     TCGA-HZ-8638     TCGA-HZ-A49G     TCGA-HZ-A49H 
"KLC3 WILD-TYPE" "KLC3 WILD-TYPE" "KLC3 WILD-TYPE" "KLC3 WILD-TYPE" 
    TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-IB-7644     TCGA-IB-7645 
"KLC3 WILD-TYPE" "KLC3 WILD-TYPE" "KLC3 WILD-TYPE" "KLC3 WILD-TYPE" 
    TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7651 
"KLC3 WILD-TYPE"   "KLC3 MUTATED" "KLC3 WILD-TYPE" "KLC3 WILD-TYPE" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887 
"KLC3 WILD-TYPE" "KLC3 WILD-TYPE" "KLC3 WILD-TYPE" "KLC3 WILD-TYPE" 
    TCGA-IB-7888     TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891 
"KLC3 WILD-TYPE" "KLC3 WILD-TYPE" "KLC3 WILD-TYPE" "KLC3 WILD-TYPE" 
    TCGA-IB-7893     TCGA-IB-7897     TCGA-IB-8126     TCGA-IB-8127 
"KLC3 WILD-TYPE"   "KLC3 MUTATED" "KLC3 WILD-TYPE" "KLC3 WILD-TYPE" 
    TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS 
"KLC3 WILD-TYPE" "KLC3 WILD-TYPE" "KLC3 WILD-TYPE" "KLC3 WILD-TYPE" 
    TCGA-IB-A5ST     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
"KLC3 WILD-TYPE" "KLC3 WILD-TYPE" "KLC3 WILD-TYPE" "KLC3 WILD-TYPE" 
    TCGA-PZ-A5RE     TCGA-Q3-A5QY     TCGA-US-A779     TCGA-US-A77E 
"KLC3 WILD-TYPE" "KLC3 WILD-TYPE" "KLC3 WILD-TYPE" "KLC3 WILD-TYPE" 
    TCGA-US-A77J 
"KLC3 WILD-TYPE" 
[1] "hr=" "1.1"
D412V2, continuous
                vv
clus             STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  KLC3 MUTATED          0        0         0         2         1        0
  KLC3 WILD-TYPE        1        4        11        49         1        3
D412V3, multiclass
                vv
clus             T1+T2 T3+T4
  KLC3 MUTATED       0     3
  KLC3 WILD-TYPE     6    63
D412V4, multiclass
       clus
vv      KLC3 MUTATED KLC3 WILD-TYPE
  T1+T2            0              6
  T3+T4            3             63
D412V5, binary
                cls
clus              0  1
  KLC3 MUTATED    1  2
  KLC3 WILD-TYPE 16 52
[1] "tbl2"
                cls
clus             [,1] [,2]
  KLC3 MUTATED      1    2
  KLC3 WILD-TYPE   16   52
   clus
vv  KLC3 MUTATED KLC3 WILD-TYPE
  0            1             16
  1            2             52
                vv
clus             M0 M1 MX
  KLC3 MUTATED    2  0  1
  KLC3 WILD-TYPE 37  3 29
D412V6, multiclass
    clus
vv   KLC3 MUTATED KLC3 WILD-TYPE
  M0            2             37
  M1            0              3
  MX            1             29
D412V7, binary
                cls
clus              0  1
  KLC3 MUTATED    2  1
  KLC3 WILD-TYPE 34 35
[1] "tbl2"
                cls
clus             [,1] [,2]
  KLC3 MUTATED      2    1
  KLC3 WILD-TYPE   34   35
        clus
vv       KLC3 MUTATED KLC3 WILD-TYPE
  FEMALE            2             34
  MALE              1             35
                vv
clus             PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  KLC3 MUTATED                                     3
  KLC3 WILD-TYPE                                  62
                vv
clus             PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  KLC3 MUTATED                                       0
  KLC3 WILD-TYPE                                     4
                vv
clus             PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  KLC3 MUTATED                                                  0
  KLC3 WILD-TYPE                                                2
D412V8, multiclass
                                                  clus
vv                                                 KLC3 MUTATED KLC3 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                         3             62
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                       0              4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA            0              2
D412V9, continuous
D412V10, continuous
                vv
clus             R0 R1 RX
  KLC3 MUTATED    2  1  0
  KLC3 WILD-TYPE 40 23  2
D412V11, multiclass
    clus
vv   KLC3 MUTATED KLC3 WILD-TYPE
  R0            2             40
  R1            1             23
  RX            0              2
D412V12, continuous

Clustering(413) Variable = PPIG MUTATION ANALYSIS
D413V1, survival
                sevent
clus2             0  1
  PPIG MUTATED    0  3
  PPIG WILD-TYPE 40 26
  PPIG MUTATED PPIG WILD-TYPE 
             3             66 
  PPIG MUTATED PPIG WILD-TYPE 
             3             26 
$`PPIG MUTATED`
TCGA-F2-7273 TCGA-FZ-5922 TCGA-IB-7651 
       11.84        36.20        19.82 

$`PPIG WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H TCGA-FB-A4P5 
       10.98         9.70         7.10         5.03        19.27         0.13 
TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR TCGA-FZ-5920 
       11.93        12.66         2.47         0.03         5.46         2.01 
TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7289 TCGA-HZ-7918 
       20.81        12.89         7.66        13.02         7.89         0.92 
TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 
        0.66         0.13         0.26        12.13        11.87         0.26 
TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 
        0.62         0.79         0.69         3.95         0.92         0.53 
TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK 
        0.16         2.99         0.76         0.95         6.38         1.51 
TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7652 
       11.41        49.38         4.77        21.90        15.35        15.65 
TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 
       27.98         4.04         3.62        43.79        15.81        19.66 
TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO 
       16.04         3.85        15.98         0.56        17.16        10.82 
TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX 
        9.86         7.20        15.12         0.26         1.35         4.18 
TCGA-OE-A75W TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
        3.62         8.12        13.68        16.80        14.14        18.67 

  PPIG MUTATED PPIG WILD-TYPE 
         11.84           0.03 
  PPIG MUTATED PPIG WILD-TYPE 
         36.20          49.38 
  PPIG MUTATED PPIG WILD-TYPE 
         19.82           7.15 
[1] "11.8 - 36.2 (19.8)" "0.0 - 49.4 (7.2)"  
    TCGA-F2-6879     TCGA-F2-6880     TCGA-F2-7273     TCGA-F2-7276 
"PPIG WILD-TYPE" "PPIG WILD-TYPE"   "PPIG MUTATED" "PPIG WILD-TYPE" 
    TCGA-F2-A44G     TCGA-F2-A44H     TCGA-FB-A4P5     TCGA-FB-A4P6 
"PPIG WILD-TYPE" "PPIG WILD-TYPE" "PPIG WILD-TYPE" "PPIG WILD-TYPE" 
    TCGA-FB-A545     TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-FB-A7DR 
"PPIG WILD-TYPE" "PPIG WILD-TYPE" "PPIG WILD-TYPE" "PPIG WILD-TYPE" 
    TCGA-FZ-5920     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-H6-8124 
"PPIG WILD-TYPE"   "PPIG MUTATED" "PPIG WILD-TYPE" "PPIG WILD-TYPE" 
    TCGA-H6-A45N     TCGA-H8-A6C1     TCGA-HZ-7289     TCGA-HZ-7918 
"PPIG WILD-TYPE" "PPIG WILD-TYPE" "PPIG WILD-TYPE" "PPIG WILD-TYPE" 
    TCGA-HZ-7919     TCGA-HZ-7922     TCGA-HZ-7923     TCGA-HZ-7924 
"PPIG WILD-TYPE" "PPIG WILD-TYPE" "PPIG WILD-TYPE" "PPIG WILD-TYPE" 
    TCGA-HZ-7925     TCGA-HZ-7926     TCGA-HZ-8001     TCGA-HZ-8002 
"PPIG WILD-TYPE" "PPIG WILD-TYPE" "PPIG WILD-TYPE" "PPIG WILD-TYPE" 
    TCGA-HZ-8003     TCGA-HZ-8005     TCGA-HZ-8315     TCGA-HZ-8317 
"PPIG WILD-TYPE" "PPIG WILD-TYPE" "PPIG WILD-TYPE" "PPIG WILD-TYPE" 
    TCGA-HZ-8636     TCGA-HZ-8638     TCGA-HZ-A49G     TCGA-HZ-A49H 
"PPIG WILD-TYPE" "PPIG WILD-TYPE" "PPIG WILD-TYPE" "PPIG WILD-TYPE" 
    TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-IB-7644     TCGA-IB-7645 
"PPIG WILD-TYPE" "PPIG WILD-TYPE" "PPIG WILD-TYPE" "PPIG WILD-TYPE" 
    TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7651 
"PPIG WILD-TYPE" "PPIG WILD-TYPE" "PPIG WILD-TYPE"   "PPIG MUTATED" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887 
"PPIG WILD-TYPE" "PPIG WILD-TYPE" "PPIG WILD-TYPE" "PPIG WILD-TYPE" 
    TCGA-IB-7888     TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891 
"PPIG WILD-TYPE" "PPIG WILD-TYPE" "PPIG WILD-TYPE" "PPIG WILD-TYPE" 
    TCGA-IB-7893     TCGA-IB-7897     TCGA-IB-8126     TCGA-IB-8127 
"PPIG WILD-TYPE" "PPIG WILD-TYPE" "PPIG WILD-TYPE" "PPIG WILD-TYPE" 
    TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS 
"PPIG WILD-TYPE" "PPIG WILD-TYPE" "PPIG WILD-TYPE" "PPIG WILD-TYPE" 
    TCGA-IB-A5ST     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
"PPIG WILD-TYPE" "PPIG WILD-TYPE" "PPIG WILD-TYPE" "PPIG WILD-TYPE" 
    TCGA-PZ-A5RE     TCGA-Q3-A5QY     TCGA-US-A779     TCGA-US-A77E 
"PPIG WILD-TYPE" "PPIG WILD-TYPE" "PPIG WILD-TYPE" "PPIG WILD-TYPE" 
    TCGA-US-A77J 
"PPIG WILD-TYPE" 
    TCGA-F2-6879     TCGA-F2-6880     TCGA-F2-7273     TCGA-F2-7276 
"PPIG WILD-TYPE" "PPIG WILD-TYPE"   "PPIG MUTATED" "PPIG WILD-TYPE" 
    TCGA-F2-A44G     TCGA-F2-A44H     TCGA-FB-A4P5     TCGA-FB-A4P6 
"PPIG WILD-TYPE" "PPIG WILD-TYPE" "PPIG WILD-TYPE" "PPIG WILD-TYPE" 
    TCGA-FB-A545     TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-FB-A7DR 
"PPIG WILD-TYPE" "PPIG WILD-TYPE" "PPIG WILD-TYPE" "PPIG WILD-TYPE" 
    TCGA-FZ-5920     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-H6-8124 
"PPIG WILD-TYPE"   "PPIG MUTATED" "PPIG WILD-TYPE" "PPIG WILD-TYPE" 
    TCGA-H6-A45N     TCGA-H8-A6C1     TCGA-HZ-7289     TCGA-HZ-7918 
"PPIG WILD-TYPE" "PPIG WILD-TYPE" "PPIG WILD-TYPE" "PPIG WILD-TYPE" 
    TCGA-HZ-7919     TCGA-HZ-7922     TCGA-HZ-7923     TCGA-HZ-7924 
"PPIG WILD-TYPE" "PPIG WILD-TYPE" "PPIG WILD-TYPE" "PPIG WILD-TYPE" 
    TCGA-HZ-7925     TCGA-HZ-7926     TCGA-HZ-8001     TCGA-HZ-8002 
"PPIG WILD-TYPE" "PPIG WILD-TYPE" "PPIG WILD-TYPE" "PPIG WILD-TYPE" 
    TCGA-HZ-8003     TCGA-HZ-8005     TCGA-HZ-8315     TCGA-HZ-8317 
"PPIG WILD-TYPE" "PPIG WILD-TYPE" "PPIG WILD-TYPE" "PPIG WILD-TYPE" 
    TCGA-HZ-8636     TCGA-HZ-8638     TCGA-HZ-A49G     TCGA-HZ-A49H 
"PPIG WILD-TYPE" "PPIG WILD-TYPE" "PPIG WILD-TYPE" "PPIG WILD-TYPE" 
    TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-IB-7644     TCGA-IB-7645 
"PPIG WILD-TYPE" "PPIG WILD-TYPE" "PPIG WILD-TYPE" "PPIG WILD-TYPE" 
    TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7651 
"PPIG WILD-TYPE" "PPIG WILD-TYPE" "PPIG WILD-TYPE"   "PPIG MUTATED" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887 
"PPIG WILD-TYPE" "PPIG WILD-TYPE" "PPIG WILD-TYPE" "PPIG WILD-TYPE" 
    TCGA-IB-7888     TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891 
"PPIG WILD-TYPE" "PPIG WILD-TYPE" "PPIG WILD-TYPE" "PPIG WILD-TYPE" 
    TCGA-IB-7893     TCGA-IB-7897     TCGA-IB-8126     TCGA-IB-8127 
"PPIG WILD-TYPE" "PPIG WILD-TYPE" "PPIG WILD-TYPE" "PPIG WILD-TYPE" 
    TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS 
"PPIG WILD-TYPE" "PPIG WILD-TYPE" "PPIG WILD-TYPE" "PPIG WILD-TYPE" 
    TCGA-IB-A5ST     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
"PPIG WILD-TYPE" "PPIG WILD-TYPE" "PPIG WILD-TYPE" "PPIG WILD-TYPE" 
    TCGA-PZ-A5RE     TCGA-Q3-A5QY     TCGA-US-A779     TCGA-US-A77E 
"PPIG WILD-TYPE" "PPIG WILD-TYPE" "PPIG WILD-TYPE" "PPIG WILD-TYPE" 
    TCGA-US-A77J 
"PPIG WILD-TYPE" 
    TCGA-F2-6879     TCGA-F2-6880     TCGA-F2-7273     TCGA-F2-7276 
"PPIG WILD-TYPE" "PPIG WILD-TYPE"   "PPIG MUTATED" "PPIG WILD-TYPE" 
    TCGA-F2-A44G     TCGA-F2-A44H     TCGA-FB-A4P5     TCGA-FB-A4P6 
"PPIG WILD-TYPE" "PPIG WILD-TYPE" "PPIG WILD-TYPE" "PPIG WILD-TYPE" 
    TCGA-FB-A545     TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-FB-A7DR 
"PPIG WILD-TYPE" "PPIG WILD-TYPE" "PPIG WILD-TYPE" "PPIG WILD-TYPE" 
    TCGA-FZ-5920     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-H6-8124 
"PPIG WILD-TYPE"   "PPIG MUTATED" "PPIG WILD-TYPE" "PPIG WILD-TYPE" 
    TCGA-H6-A45N     TCGA-H8-A6C1     TCGA-HZ-7289     TCGA-HZ-7918 
"PPIG WILD-TYPE" "PPIG WILD-TYPE" "PPIG WILD-TYPE" "PPIG WILD-TYPE" 
    TCGA-HZ-7919     TCGA-HZ-7922     TCGA-HZ-7923     TCGA-HZ-7924 
"PPIG WILD-TYPE" "PPIG WILD-TYPE" "PPIG WILD-TYPE" "PPIG WILD-TYPE" 
    TCGA-HZ-7925     TCGA-HZ-7926     TCGA-HZ-8001     TCGA-HZ-8002 
"PPIG WILD-TYPE" "PPIG WILD-TYPE" "PPIG WILD-TYPE" "PPIG WILD-TYPE" 
    TCGA-HZ-8003     TCGA-HZ-8005     TCGA-HZ-8315     TCGA-HZ-8317 
"PPIG WILD-TYPE" "PPIG WILD-TYPE" "PPIG WILD-TYPE" "PPIG WILD-TYPE" 
    TCGA-HZ-8636     TCGA-HZ-8638     TCGA-HZ-A49G     TCGA-HZ-A49H 
"PPIG WILD-TYPE" "PPIG WILD-TYPE" "PPIG WILD-TYPE" "PPIG WILD-TYPE" 
    TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-IB-7644     TCGA-IB-7645 
"PPIG WILD-TYPE" "PPIG WILD-TYPE" "PPIG WILD-TYPE" "PPIG WILD-TYPE" 
    TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7651 
"PPIG WILD-TYPE" "PPIG WILD-TYPE" "PPIG WILD-TYPE"   "PPIG MUTATED" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887 
"PPIG WILD-TYPE" "PPIG WILD-TYPE" "PPIG WILD-TYPE" "PPIG WILD-TYPE" 
    TCGA-IB-7888     TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891 
"PPIG WILD-TYPE" "PPIG WILD-TYPE" "PPIG WILD-TYPE" "PPIG WILD-TYPE" 
    TCGA-IB-7893     TCGA-IB-7897     TCGA-IB-8126     TCGA-IB-8127 
"PPIG WILD-TYPE" "PPIG WILD-TYPE" "PPIG WILD-TYPE" "PPIG WILD-TYPE" 
    TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS 
"PPIG WILD-TYPE" "PPIG WILD-TYPE" "PPIG WILD-TYPE" "PPIG WILD-TYPE" 
    TCGA-IB-A5ST     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
"PPIG WILD-TYPE" "PPIG WILD-TYPE" "PPIG WILD-TYPE" "PPIG WILD-TYPE" 
    TCGA-PZ-A5RE     TCGA-Q3-A5QY     TCGA-US-A779     TCGA-US-A77E 
"PPIG WILD-TYPE" "PPIG WILD-TYPE" "PPIG WILD-TYPE" "PPIG WILD-TYPE" 
    TCGA-US-A77J 
"PPIG WILD-TYPE" 
[1] "hr=" "1.1"
D413V2, continuous
                vv
clus             STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  PPIG MUTATED          0        0         1         2         0        0
  PPIG WILD-TYPE        1        4        10        49         2        3
D413V3, multiclass
                vv
clus             T1+T2 T3+T4
  PPIG MUTATED       0     3
  PPIG WILD-TYPE     6    63
D413V4, multiclass
       clus
vv      PPIG MUTATED PPIG WILD-TYPE
  T1+T2            0              6
  T3+T4            3             63
D413V5, binary
                cls
clus              0  1
  PPIG MUTATED    1  2
  PPIG WILD-TYPE 16 52
[1] "tbl2"
                cls
clus             [,1] [,2]
  PPIG MUTATED      1    2
  PPIG WILD-TYPE   16   52
   clus
vv  PPIG MUTATED PPIG WILD-TYPE
  0            1             16
  1            2             52
                vv
clus             M0 M1 MX
  PPIG MUTATED    3  0  0
  PPIG WILD-TYPE 36  3 30
D413V6, multiclass
    clus
vv   PPIG MUTATED PPIG WILD-TYPE
  M0            3             36
  M1            0              3
  MX            0             30
D413V7, binary
                cls
clus              0  1
  PPIG MUTATED    1  2
  PPIG WILD-TYPE 35 34
[1] "tbl2"
                cls
clus             [,1] [,2]
  PPIG MUTATED      1    2
  PPIG WILD-TYPE   35   34
        clus
vv       PPIG MUTATED PPIG WILD-TYPE
  FEMALE            1             35
  MALE              2             34
                vv
clus             PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  PPIG MUTATED                                     3
  PPIG WILD-TYPE                                  62
                vv
clus             PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  PPIG MUTATED                                       0
  PPIG WILD-TYPE                                     4
                vv
clus             PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  PPIG MUTATED                                                  0
  PPIG WILD-TYPE                                                2
D413V8, multiclass
                                                  clus
vv                                                 PPIG MUTATED PPIG WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                         3             62
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                       0              4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA            0              2
D413V9, continuous
[1] "Remove cluster labels:" "PPIG MUTATED"          
clus
  PPIG MUTATED PPIG WILD-TYPE 
             1             21 
    TCGA-F2-6880     TCGA-FB-A4P5     TCGA-FB-A4P6     TCGA-FB-A5VM 
"PPIG WILD-TYPE" "PPIG WILD-TYPE" "PPIG WILD-TYPE" "PPIG WILD-TYPE" 
    TCGA-FB-A78T     TCGA-FB-A7DR     TCGA-H6-8124     TCGA-H6-A45N 
"PPIG WILD-TYPE" "PPIG WILD-TYPE" "PPIG WILD-TYPE" "PPIG WILD-TYPE" 
    TCGA-H8-A6C1     TCGA-IB-7644     TCGA-IB-7649     TCGA-IB-7885 
"PPIG WILD-TYPE" "PPIG WILD-TYPE" "PPIG WILD-TYPE" "PPIG WILD-TYPE" 
    TCGA-IB-7886     TCGA-IB-7887     TCGA-IB-7891     TCGA-IB-8126 
"PPIG WILD-TYPE" "PPIG WILD-TYPE" "PPIG WILD-TYPE" "PPIG WILD-TYPE" 
    TCGA-IB-8127     TCGA-IB-A5SS     TCGA-IB-A6UG     TCGA-LB-A7SX 
"PPIG WILD-TYPE" "PPIG WILD-TYPE" "PPIG WILD-TYPE" "PPIG WILD-TYPE" 
    TCGA-OE-A75W 
"PPIG WILD-TYPE" 
D413V10, continuous
[1] "Remove cluster labels:" "PPIG MUTATED"          
clus
  PPIG MUTATED PPIG WILD-TYPE 
             1             18 
    TCGA-FB-A4P5     TCGA-FB-A4P6     TCGA-FB-A5VM     TCGA-FB-A78T 
"PPIG WILD-TYPE" "PPIG WILD-TYPE" "PPIG WILD-TYPE" "PPIG WILD-TYPE" 
    TCGA-FB-A7DR     TCGA-H6-8124     TCGA-H8-A6C1     TCGA-IB-7644 
"PPIG WILD-TYPE" "PPIG WILD-TYPE" "PPIG WILD-TYPE" "PPIG WILD-TYPE" 
    TCGA-IB-7649     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7891 
"PPIG WILD-TYPE" "PPIG WILD-TYPE" "PPIG WILD-TYPE" "PPIG WILD-TYPE" 
    TCGA-IB-8126     TCGA-IB-8127     TCGA-IB-A5SS     TCGA-IB-A6UG 
"PPIG WILD-TYPE" "PPIG WILD-TYPE" "PPIG WILD-TYPE" "PPIG WILD-TYPE" 
    TCGA-LB-A7SX     TCGA-OE-A75W 
"PPIG WILD-TYPE" "PPIG WILD-TYPE" 
                vv
clus             R0 R1 RX
  PPIG MUTATED    2  1  0
  PPIG WILD-TYPE 40 23  2
D413V11, multiclass
    clus
vv   PPIG MUTATED PPIG WILD-TYPE
  R0            2             40
  R1            1             23
  RX            0              2
D413V12, continuous

Clustering(414) Variable = PSMB4 MUTATION ANALYSIS
D414V1, survival
                 sevent
clus2              0  1
  PSMB4 MUTATED    3  0
  PSMB4 WILD-TYPE 37 29
  PSMB4 MUTATED PSMB4 WILD-TYPE 
              3              66 
  PSMB4 MUTATED PSMB4 WILD-TYPE 
              0              29 
$`PSMB4 MUTATED`
TCGA-HZ-8002 TCGA-IB-8127 TCGA-IB-A5SO 
        0.79        17.16        10.82 

$`PSMB4 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P5 TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR 
        0.13        11.93        12.66         2.47         0.03         5.46 
TCGA-FZ-5920 TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 
        2.01        36.20        20.81        12.89         7.66        13.02 
TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 
        7.89         0.92         0.66         0.13         0.26        12.13 
TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 
       11.87         0.26         0.62         0.69         3.95         0.92 
TCGA-HZ-8317 TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH 
        0.53         0.16         2.99         0.76         0.95         6.38 
TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 
        1.51        11.41        49.38         4.77        21.90        15.35 
TCGA-IB-7651 TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7888 
       19.82        15.65        27.98         4.04         3.62        43.79 
TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-8126 
       15.81        19.66        16.04         3.85        15.98         0.56 
TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX 
        9.86         7.20        15.12         0.26         1.35         4.18 
TCGA-OE-A75W TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
        3.62         8.12        13.68        16.80        14.14        18.67 

  PSMB4 MUTATED PSMB4 WILD-TYPE 
           0.79            0.03 
  PSMB4 MUTATED PSMB4 WILD-TYPE 
          17.16           49.38 
  PSMB4 MUTATED PSMB4 WILD-TYPE 
          10.82            7.43 
[1] "0.8 - 17.2 (10.8)" "0.0 - 49.4 (7.4)" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"PSMB4 WILD-TYPE" "PSMB4 WILD-TYPE" "PSMB4 WILD-TYPE" "PSMB4 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"PSMB4 WILD-TYPE" "PSMB4 WILD-TYPE" "PSMB4 WILD-TYPE" "PSMB4 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"PSMB4 WILD-TYPE" "PSMB4 WILD-TYPE" "PSMB4 WILD-TYPE" "PSMB4 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"PSMB4 WILD-TYPE" "PSMB4 WILD-TYPE" "PSMB4 WILD-TYPE" "PSMB4 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"PSMB4 WILD-TYPE" "PSMB4 WILD-TYPE" "PSMB4 WILD-TYPE" "PSMB4 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"PSMB4 WILD-TYPE" "PSMB4 WILD-TYPE" "PSMB4 WILD-TYPE" "PSMB4 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"PSMB4 WILD-TYPE" "PSMB4 WILD-TYPE" "PSMB4 WILD-TYPE"   "PSMB4 MUTATED" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"PSMB4 WILD-TYPE" "PSMB4 WILD-TYPE" "PSMB4 WILD-TYPE" "PSMB4 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"PSMB4 WILD-TYPE" "PSMB4 WILD-TYPE" "PSMB4 WILD-TYPE" "PSMB4 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"PSMB4 WILD-TYPE" "PSMB4 WILD-TYPE" "PSMB4 WILD-TYPE" "PSMB4 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"PSMB4 WILD-TYPE" "PSMB4 WILD-TYPE" "PSMB4 WILD-TYPE" "PSMB4 WILD-TYPE" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"PSMB4 WILD-TYPE" "PSMB4 WILD-TYPE" "PSMB4 WILD-TYPE" "PSMB4 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"PSMB4 WILD-TYPE" "PSMB4 WILD-TYPE" "PSMB4 WILD-TYPE" "PSMB4 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"PSMB4 WILD-TYPE" "PSMB4 WILD-TYPE" "PSMB4 WILD-TYPE"   "PSMB4 MUTATED" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
  "PSMB4 MUTATED" "PSMB4 WILD-TYPE" "PSMB4 WILD-TYPE" "PSMB4 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"PSMB4 WILD-TYPE" "PSMB4 WILD-TYPE" "PSMB4 WILD-TYPE" "PSMB4 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"PSMB4 WILD-TYPE" "PSMB4 WILD-TYPE" "PSMB4 WILD-TYPE" "PSMB4 WILD-TYPE" 
     TCGA-US-A77J 
"PSMB4 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"PSMB4 WILD-TYPE" "PSMB4 WILD-TYPE" "PSMB4 WILD-TYPE" "PSMB4 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"PSMB4 WILD-TYPE" "PSMB4 WILD-TYPE" "PSMB4 WILD-TYPE" "PSMB4 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"PSMB4 WILD-TYPE" "PSMB4 WILD-TYPE" "PSMB4 WILD-TYPE" "PSMB4 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"PSMB4 WILD-TYPE" "PSMB4 WILD-TYPE" "PSMB4 WILD-TYPE" "PSMB4 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"PSMB4 WILD-TYPE" "PSMB4 WILD-TYPE" "PSMB4 WILD-TYPE" "PSMB4 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"PSMB4 WILD-TYPE" "PSMB4 WILD-TYPE" "PSMB4 WILD-TYPE" "PSMB4 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"PSMB4 WILD-TYPE" "PSMB4 WILD-TYPE" "PSMB4 WILD-TYPE"   "PSMB4 MUTATED" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"PSMB4 WILD-TYPE" "PSMB4 WILD-TYPE" "PSMB4 WILD-TYPE" "PSMB4 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"PSMB4 WILD-TYPE" "PSMB4 WILD-TYPE" "PSMB4 WILD-TYPE" "PSMB4 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"PSMB4 WILD-TYPE" "PSMB4 WILD-TYPE" "PSMB4 WILD-TYPE" "PSMB4 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"PSMB4 WILD-TYPE" "PSMB4 WILD-TYPE" "PSMB4 WILD-TYPE" "PSMB4 WILD-TYPE" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"PSMB4 WILD-TYPE" "PSMB4 WILD-TYPE" "PSMB4 WILD-TYPE" "PSMB4 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"PSMB4 WILD-TYPE" "PSMB4 WILD-TYPE" "PSMB4 WILD-TYPE" "PSMB4 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"PSMB4 WILD-TYPE" "PSMB4 WILD-TYPE" "PSMB4 WILD-TYPE"   "PSMB4 MUTATED" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
  "PSMB4 MUTATED" "PSMB4 WILD-TYPE" "PSMB4 WILD-TYPE" "PSMB4 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"PSMB4 WILD-TYPE" "PSMB4 WILD-TYPE" "PSMB4 WILD-TYPE" "PSMB4 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"PSMB4 WILD-TYPE" "PSMB4 WILD-TYPE" "PSMB4 WILD-TYPE" "PSMB4 WILD-TYPE" 
     TCGA-US-A77J 
"PSMB4 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"PSMB4 WILD-TYPE" "PSMB4 WILD-TYPE" "PSMB4 WILD-TYPE" "PSMB4 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"PSMB4 WILD-TYPE" "PSMB4 WILD-TYPE" "PSMB4 WILD-TYPE" "PSMB4 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"PSMB4 WILD-TYPE" "PSMB4 WILD-TYPE" "PSMB4 WILD-TYPE" "PSMB4 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"PSMB4 WILD-TYPE" "PSMB4 WILD-TYPE" "PSMB4 WILD-TYPE" "PSMB4 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"PSMB4 WILD-TYPE" "PSMB4 WILD-TYPE" "PSMB4 WILD-TYPE" "PSMB4 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"PSMB4 WILD-TYPE" "PSMB4 WILD-TYPE" "PSMB4 WILD-TYPE" "PSMB4 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"PSMB4 WILD-TYPE" "PSMB4 WILD-TYPE" "PSMB4 WILD-TYPE"   "PSMB4 MUTATED" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"PSMB4 WILD-TYPE" "PSMB4 WILD-TYPE" "PSMB4 WILD-TYPE" "PSMB4 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"PSMB4 WILD-TYPE" "PSMB4 WILD-TYPE" "PSMB4 WILD-TYPE" "PSMB4 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"PSMB4 WILD-TYPE" "PSMB4 WILD-TYPE" "PSMB4 WILD-TYPE" "PSMB4 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"PSMB4 WILD-TYPE" "PSMB4 WILD-TYPE" "PSMB4 WILD-TYPE" "PSMB4 WILD-TYPE" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"PSMB4 WILD-TYPE" "PSMB4 WILD-TYPE" "PSMB4 WILD-TYPE" "PSMB4 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"PSMB4 WILD-TYPE" "PSMB4 WILD-TYPE" "PSMB4 WILD-TYPE" "PSMB4 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"PSMB4 WILD-TYPE" "PSMB4 WILD-TYPE" "PSMB4 WILD-TYPE"   "PSMB4 MUTATED" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
  "PSMB4 MUTATED" "PSMB4 WILD-TYPE" "PSMB4 WILD-TYPE" "PSMB4 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"PSMB4 WILD-TYPE" "PSMB4 WILD-TYPE" "PSMB4 WILD-TYPE" "PSMB4 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"PSMB4 WILD-TYPE" "PSMB4 WILD-TYPE" "PSMB4 WILD-TYPE" "PSMB4 WILD-TYPE" 
     TCGA-US-A77J 
"PSMB4 WILD-TYPE" 
[1] "hr="     "2.6e+07"
D414V2, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  PSMB4 MUTATED          0        0         0         3         0        0
  PSMB4 WILD-TYPE        1        4        11        48         2        3
D414V3, multiclass
                 vv
clus              T1+T2 T3+T4
  PSMB4 MUTATED       0     3
  PSMB4 WILD-TYPE     6    63
D414V4, multiclass
       clus
vv      PSMB4 MUTATED PSMB4 WILD-TYPE
  T1+T2             0               6
  T3+T4             3              63
D414V5, binary
                 cls
clus               0  1
  PSMB4 MUTATED    0  3
  PSMB4 WILD-TYPE 17 51
[1] "tbl2"
                 cls
clus              [,1] [,2]
  PSMB4 MUTATED      0    3
  PSMB4 WILD-TYPE   17   51
   clus
vv  PSMB4 MUTATED PSMB4 WILD-TYPE
  0             0              17
  1             3              51
                 vv
clus              M0 M1 MX
  PSMB4 MUTATED    2  0  1
  PSMB4 WILD-TYPE 37  3 29
D414V6, multiclass
    clus
vv   PSMB4 MUTATED PSMB4 WILD-TYPE
  M0             2              37
  M1             0               3
  MX             1              29
D414V7, binary
                 cls
clus               0  1
  PSMB4 MUTATED    0  3
  PSMB4 WILD-TYPE 36 33
[1] "tbl2"
                 cls
clus              [,1] [,2]
  PSMB4 MUTATED      0    3
  PSMB4 WILD-TYPE   36   33
        clus
vv       PSMB4 MUTATED PSMB4 WILD-TYPE
  FEMALE             0              36
  MALE               3              33
                 vv
clus              PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  PSMB4 MUTATED                                     3
  PSMB4 WILD-TYPE                                  62
                 vv
clus              PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  PSMB4 MUTATED                                       0
  PSMB4 WILD-TYPE                                     4
                 vv
clus              PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  PSMB4 MUTATED                                                  0
  PSMB4 WILD-TYPE                                                2
D414V8, multiclass
                                                  clus
vv                                                 PSMB4 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                          3
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                        0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA             0
                                                  clus
vv                                                 PSMB4 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                           62
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                          4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA               2
D414V9, continuous
[1] "Remove cluster labels:" "PSMB4 MUTATED"         
clus
  PSMB4 MUTATED PSMB4 WILD-TYPE 
              1              21 
     TCGA-F2-6880      TCGA-FB-A4P5      TCGA-FB-A4P6      TCGA-FB-A5VM 
"PSMB4 WILD-TYPE" "PSMB4 WILD-TYPE" "PSMB4 WILD-TYPE" "PSMB4 WILD-TYPE" 
     TCGA-FB-A78T      TCGA-FB-A7DR      TCGA-H6-8124      TCGA-H6-A45N 
"PSMB4 WILD-TYPE" "PSMB4 WILD-TYPE" "PSMB4 WILD-TYPE" "PSMB4 WILD-TYPE" 
     TCGA-H8-A6C1      TCGA-IB-7644      TCGA-IB-7649      TCGA-IB-7651 
"PSMB4 WILD-TYPE" "PSMB4 WILD-TYPE" "PSMB4 WILD-TYPE" "PSMB4 WILD-TYPE" 
     TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887      TCGA-IB-7891 
"PSMB4 WILD-TYPE" "PSMB4 WILD-TYPE" "PSMB4 WILD-TYPE" "PSMB4 WILD-TYPE" 
     TCGA-IB-8126      TCGA-IB-A5SS      TCGA-IB-A6UG      TCGA-LB-A7SX 
"PSMB4 WILD-TYPE" "PSMB4 WILD-TYPE" "PSMB4 WILD-TYPE" "PSMB4 WILD-TYPE" 
     TCGA-OE-A75W 
"PSMB4 WILD-TYPE" 
D414V10, continuous
[1] "Remove cluster labels:" "PSMB4 MUTATED"         
clus
  PSMB4 MUTATED PSMB4 WILD-TYPE 
              1              18 
     TCGA-FB-A4P5      TCGA-FB-A4P6      TCGA-FB-A5VM      TCGA-FB-A78T 
"PSMB4 WILD-TYPE" "PSMB4 WILD-TYPE" "PSMB4 WILD-TYPE" "PSMB4 WILD-TYPE" 
     TCGA-FB-A7DR      TCGA-H6-8124      TCGA-H8-A6C1      TCGA-IB-7644 
"PSMB4 WILD-TYPE" "PSMB4 WILD-TYPE" "PSMB4 WILD-TYPE" "PSMB4 WILD-TYPE" 
     TCGA-IB-7649      TCGA-IB-7651      TCGA-IB-7885      TCGA-IB-7886 
"PSMB4 WILD-TYPE" "PSMB4 WILD-TYPE" "PSMB4 WILD-TYPE" "PSMB4 WILD-TYPE" 
     TCGA-IB-7891      TCGA-IB-8126      TCGA-IB-A5SS      TCGA-IB-A6UG 
"PSMB4 WILD-TYPE" "PSMB4 WILD-TYPE" "PSMB4 WILD-TYPE" "PSMB4 WILD-TYPE" 
     TCGA-LB-A7SX      TCGA-OE-A75W 
"PSMB4 WILD-TYPE" "PSMB4 WILD-TYPE" 
                 vv
clus              R0 R1 RX
  PSMB4 MUTATED    2  1  0
  PSMB4 WILD-TYPE 40 23  2
D414V11, multiclass
    clus
vv   PSMB4 MUTATED PSMB4 WILD-TYPE
  R0             2              40
  R1             1              23
  RX             0               2
D414V12, continuous

Clustering(415) Variable = AFAP1L2 MUTATION ANALYSIS
D415V1, survival
                   sevent
clus2                0  1
  AFAP1L2 MUTATED    3  5
  AFAP1L2 WILD-TYPE 37 24
  AFAP1L2 MUTATED AFAP1L2 WILD-TYPE 
                8                61 
  AFAP1L2 MUTATED AFAP1L2 WILD-TYPE 
                5                24 
$`AFAP1L2 MUTATED`
TCGA-FB-A4P5 TCGA-FB-A545 TCGA-HZ-8002 TCGA-HZ-A4BH TCGA-IB-7651 TCGA-IB-7888 
        0.13        12.66         0.79         6.38        19.82        43.79 
TCGA-IB-7890 TCGA-US-A779 
       19.66        16.80 

$`AFAP1L2 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P6 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR TCGA-FZ-5920 TCGA-FZ-5922 
       11.93         2.47         0.03         5.46         2.01        36.20 
TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7289 TCGA-HZ-7918 
       20.81        12.89         7.66        13.02         7.89         0.92 
TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 
        0.66         0.13         0.26        12.13        11.87         0.26 
TCGA-HZ-8001 TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8636 
        0.62         0.69         3.95         0.92         0.53         0.16 
TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7645 
        2.99         0.76         0.95         1.51        11.41        49.38 
TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7886 
        4.77        21.90        15.35        15.65        27.98         4.04 
TCGA-IB-7887 TCGA-IB-7889 TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-8126 
        3.62        15.81        16.04         3.85        15.98         0.56 
TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST 
       17.16        10.82         9.86         7.20        15.12         0.26 
TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A77E 
        1.35         4.18         3.62         8.12        13.68        14.14 
TCGA-US-A77J 
       18.67 

  AFAP1L2 MUTATED AFAP1L2 WILD-TYPE 
             0.13              0.03 
  AFAP1L2 MUTATED AFAP1L2 WILD-TYPE 
            43.79             49.38 
  AFAP1L2 MUTATED AFAP1L2 WILD-TYPE 
            14.73              7.20 
[1] "0.1 - 43.8 (14.7)" "0.0 - 49.4 (7.2)" 
       TCGA-F2-6879        TCGA-F2-6880        TCGA-F2-7273        TCGA-F2-7276 
"AFAP1L2 WILD-TYPE" "AFAP1L2 WILD-TYPE" "AFAP1L2 WILD-TYPE" "AFAP1L2 WILD-TYPE" 
       TCGA-F2-A44G        TCGA-F2-A44H        TCGA-FB-A4P5        TCGA-FB-A4P6 
"AFAP1L2 WILD-TYPE" "AFAP1L2 WILD-TYPE"   "AFAP1L2 MUTATED" "AFAP1L2 WILD-TYPE" 
       TCGA-FB-A545        TCGA-FB-A5VM        TCGA-FB-A78T        TCGA-FB-A7DR 
  "AFAP1L2 MUTATED" "AFAP1L2 WILD-TYPE" "AFAP1L2 WILD-TYPE" "AFAP1L2 WILD-TYPE" 
       TCGA-FZ-5920        TCGA-FZ-5922        TCGA-FZ-5923        TCGA-H6-8124 
"AFAP1L2 WILD-TYPE" "AFAP1L2 WILD-TYPE" "AFAP1L2 WILD-TYPE" "AFAP1L2 WILD-TYPE" 
       TCGA-H6-A45N        TCGA-H8-A6C1        TCGA-HZ-7289        TCGA-HZ-7918 
"AFAP1L2 WILD-TYPE" "AFAP1L2 WILD-TYPE" "AFAP1L2 WILD-TYPE" "AFAP1L2 WILD-TYPE" 
       TCGA-HZ-7919        TCGA-HZ-7922        TCGA-HZ-7923        TCGA-HZ-7924 
"AFAP1L2 WILD-TYPE" "AFAP1L2 WILD-TYPE" "AFAP1L2 WILD-TYPE" "AFAP1L2 WILD-TYPE" 
       TCGA-HZ-7925        TCGA-HZ-7926        TCGA-HZ-8001        TCGA-HZ-8002 
"AFAP1L2 WILD-TYPE" "AFAP1L2 WILD-TYPE" "AFAP1L2 WILD-TYPE"   "AFAP1L2 MUTATED" 
       TCGA-HZ-8003        TCGA-HZ-8005        TCGA-HZ-8315        TCGA-HZ-8317 
"AFAP1L2 WILD-TYPE" "AFAP1L2 WILD-TYPE" "AFAP1L2 WILD-TYPE" "AFAP1L2 WILD-TYPE" 
       TCGA-HZ-8636        TCGA-HZ-8638        TCGA-HZ-A49G        TCGA-HZ-A49H 
"AFAP1L2 WILD-TYPE" "AFAP1L2 WILD-TYPE" "AFAP1L2 WILD-TYPE" "AFAP1L2 WILD-TYPE" 
       TCGA-HZ-A4BH        TCGA-HZ-A4BK        TCGA-IB-7644        TCGA-IB-7645 
  "AFAP1L2 MUTATED" "AFAP1L2 WILD-TYPE" "AFAP1L2 WILD-TYPE" "AFAP1L2 WILD-TYPE" 
       TCGA-IB-7646        TCGA-IB-7647        TCGA-IB-7649        TCGA-IB-7651 
"AFAP1L2 WILD-TYPE" "AFAP1L2 WILD-TYPE" "AFAP1L2 WILD-TYPE"   "AFAP1L2 MUTATED" 
       TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-7886        TCGA-IB-7887 
"AFAP1L2 WILD-TYPE" "AFAP1L2 WILD-TYPE" "AFAP1L2 WILD-TYPE" "AFAP1L2 WILD-TYPE" 
       TCGA-IB-7888        TCGA-IB-7889        TCGA-IB-7890        TCGA-IB-7891 
  "AFAP1L2 MUTATED" "AFAP1L2 WILD-TYPE"   "AFAP1L2 MUTATED" "AFAP1L2 WILD-TYPE" 
       TCGA-IB-7893        TCGA-IB-7897        TCGA-IB-8126        TCGA-IB-8127 
"AFAP1L2 WILD-TYPE" "AFAP1L2 WILD-TYPE" "AFAP1L2 WILD-TYPE" "AFAP1L2 WILD-TYPE" 
       TCGA-IB-A5SO        TCGA-IB-A5SP        TCGA-IB-A5SQ        TCGA-IB-A5SS 
"AFAP1L2 WILD-TYPE" "AFAP1L2 WILD-TYPE" "AFAP1L2 WILD-TYPE" "AFAP1L2 WILD-TYPE" 
       TCGA-IB-A5ST        TCGA-IB-A6UG        TCGA-LB-A7SX        TCGA-OE-A75W 
"AFAP1L2 WILD-TYPE" "AFAP1L2 WILD-TYPE" "AFAP1L2 WILD-TYPE" "AFAP1L2 WILD-TYPE" 
       TCGA-PZ-A5RE        TCGA-Q3-A5QY        TCGA-US-A779        TCGA-US-A77E 
"AFAP1L2 WILD-TYPE" "AFAP1L2 WILD-TYPE"   "AFAP1L2 MUTATED" "AFAP1L2 WILD-TYPE" 
       TCGA-US-A77J 
"AFAP1L2 WILD-TYPE" 
       TCGA-F2-6879        TCGA-F2-6880        TCGA-F2-7273        TCGA-F2-7276 
"AFAP1L2 WILD-TYPE" "AFAP1L2 WILD-TYPE" "AFAP1L2 WILD-TYPE" "AFAP1L2 WILD-TYPE" 
       TCGA-F2-A44G        TCGA-F2-A44H        TCGA-FB-A4P5        TCGA-FB-A4P6 
"AFAP1L2 WILD-TYPE" "AFAP1L2 WILD-TYPE"   "AFAP1L2 MUTATED" "AFAP1L2 WILD-TYPE" 
       TCGA-FB-A545        TCGA-FB-A5VM        TCGA-FB-A78T        TCGA-FB-A7DR 
  "AFAP1L2 MUTATED" "AFAP1L2 WILD-TYPE" "AFAP1L2 WILD-TYPE" "AFAP1L2 WILD-TYPE" 
       TCGA-FZ-5920        TCGA-FZ-5922        TCGA-FZ-5923        TCGA-H6-8124 
"AFAP1L2 WILD-TYPE" "AFAP1L2 WILD-TYPE" "AFAP1L2 WILD-TYPE" "AFAP1L2 WILD-TYPE" 
       TCGA-H6-A45N        TCGA-H8-A6C1        TCGA-HZ-7289        TCGA-HZ-7918 
"AFAP1L2 WILD-TYPE" "AFAP1L2 WILD-TYPE" "AFAP1L2 WILD-TYPE" "AFAP1L2 WILD-TYPE" 
       TCGA-HZ-7919        TCGA-HZ-7922        TCGA-HZ-7923        TCGA-HZ-7924 
"AFAP1L2 WILD-TYPE" "AFAP1L2 WILD-TYPE" "AFAP1L2 WILD-TYPE" "AFAP1L2 WILD-TYPE" 
       TCGA-HZ-7925        TCGA-HZ-7926        TCGA-HZ-8001        TCGA-HZ-8002 
"AFAP1L2 WILD-TYPE" "AFAP1L2 WILD-TYPE" "AFAP1L2 WILD-TYPE"   "AFAP1L2 MUTATED" 
       TCGA-HZ-8003        TCGA-HZ-8005        TCGA-HZ-8315        TCGA-HZ-8317 
"AFAP1L2 WILD-TYPE" "AFAP1L2 WILD-TYPE" "AFAP1L2 WILD-TYPE" "AFAP1L2 WILD-TYPE" 
       TCGA-HZ-8636        TCGA-HZ-8638        TCGA-HZ-A49G        TCGA-HZ-A49H 
"AFAP1L2 WILD-TYPE" "AFAP1L2 WILD-TYPE" "AFAP1L2 WILD-TYPE" "AFAP1L2 WILD-TYPE" 
       TCGA-HZ-A4BH        TCGA-HZ-A4BK        TCGA-IB-7644        TCGA-IB-7645 
  "AFAP1L2 MUTATED" "AFAP1L2 WILD-TYPE" "AFAP1L2 WILD-TYPE" "AFAP1L2 WILD-TYPE" 
       TCGA-IB-7646        TCGA-IB-7647        TCGA-IB-7649        TCGA-IB-7651 
"AFAP1L2 WILD-TYPE" "AFAP1L2 WILD-TYPE" "AFAP1L2 WILD-TYPE"   "AFAP1L2 MUTATED" 
       TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-7886        TCGA-IB-7887 
"AFAP1L2 WILD-TYPE" "AFAP1L2 WILD-TYPE" "AFAP1L2 WILD-TYPE" "AFAP1L2 WILD-TYPE" 
       TCGA-IB-7888        TCGA-IB-7889        TCGA-IB-7890        TCGA-IB-7891 
  "AFAP1L2 MUTATED" "AFAP1L2 WILD-TYPE"   "AFAP1L2 MUTATED" "AFAP1L2 WILD-TYPE" 
       TCGA-IB-7893        TCGA-IB-7897        TCGA-IB-8126        TCGA-IB-8127 
"AFAP1L2 WILD-TYPE" "AFAP1L2 WILD-TYPE" "AFAP1L2 WILD-TYPE" "AFAP1L2 WILD-TYPE" 
       TCGA-IB-A5SO        TCGA-IB-A5SP        TCGA-IB-A5SQ        TCGA-IB-A5SS 
"AFAP1L2 WILD-TYPE" "AFAP1L2 WILD-TYPE" "AFAP1L2 WILD-TYPE" "AFAP1L2 WILD-TYPE" 
       TCGA-IB-A5ST        TCGA-IB-A6UG        TCGA-LB-A7SX        TCGA-OE-A75W 
"AFAP1L2 WILD-TYPE" "AFAP1L2 WILD-TYPE" "AFAP1L2 WILD-TYPE" "AFAP1L2 WILD-TYPE" 
       TCGA-PZ-A5RE        TCGA-Q3-A5QY        TCGA-US-A779        TCGA-US-A77E 
"AFAP1L2 WILD-TYPE" "AFAP1L2 WILD-TYPE"   "AFAP1L2 MUTATED" "AFAP1L2 WILD-TYPE" 
       TCGA-US-A77J 
"AFAP1L2 WILD-TYPE" 
       TCGA-F2-6879        TCGA-F2-6880        TCGA-F2-7273        TCGA-F2-7276 
"AFAP1L2 WILD-TYPE" "AFAP1L2 WILD-TYPE" "AFAP1L2 WILD-TYPE" "AFAP1L2 WILD-TYPE" 
       TCGA-F2-A44G        TCGA-F2-A44H        TCGA-FB-A4P5        TCGA-FB-A4P6 
"AFAP1L2 WILD-TYPE" "AFAP1L2 WILD-TYPE"   "AFAP1L2 MUTATED" "AFAP1L2 WILD-TYPE" 
       TCGA-FB-A545        TCGA-FB-A5VM        TCGA-FB-A78T        TCGA-FB-A7DR 
  "AFAP1L2 MUTATED" "AFAP1L2 WILD-TYPE" "AFAP1L2 WILD-TYPE" "AFAP1L2 WILD-TYPE" 
       TCGA-FZ-5920        TCGA-FZ-5922        TCGA-FZ-5923        TCGA-H6-8124 
"AFAP1L2 WILD-TYPE" "AFAP1L2 WILD-TYPE" "AFAP1L2 WILD-TYPE" "AFAP1L2 WILD-TYPE" 
       TCGA-H6-A45N        TCGA-H8-A6C1        TCGA-HZ-7289        TCGA-HZ-7918 
"AFAP1L2 WILD-TYPE" "AFAP1L2 WILD-TYPE" "AFAP1L2 WILD-TYPE" "AFAP1L2 WILD-TYPE" 
       TCGA-HZ-7919        TCGA-HZ-7922        TCGA-HZ-7923        TCGA-HZ-7924 
"AFAP1L2 WILD-TYPE" "AFAP1L2 WILD-TYPE" "AFAP1L2 WILD-TYPE" "AFAP1L2 WILD-TYPE" 
       TCGA-HZ-7925        TCGA-HZ-7926        TCGA-HZ-8001        TCGA-HZ-8002 
"AFAP1L2 WILD-TYPE" "AFAP1L2 WILD-TYPE" "AFAP1L2 WILD-TYPE"   "AFAP1L2 MUTATED" 
       TCGA-HZ-8003        TCGA-HZ-8005        TCGA-HZ-8315        TCGA-HZ-8317 
"AFAP1L2 WILD-TYPE" "AFAP1L2 WILD-TYPE" "AFAP1L2 WILD-TYPE" "AFAP1L2 WILD-TYPE" 
       TCGA-HZ-8636        TCGA-HZ-8638        TCGA-HZ-A49G        TCGA-HZ-A49H 
"AFAP1L2 WILD-TYPE" "AFAP1L2 WILD-TYPE" "AFAP1L2 WILD-TYPE" "AFAP1L2 WILD-TYPE" 
       TCGA-HZ-A4BH        TCGA-HZ-A4BK        TCGA-IB-7644        TCGA-IB-7645 
  "AFAP1L2 MUTATED" "AFAP1L2 WILD-TYPE" "AFAP1L2 WILD-TYPE" "AFAP1L2 WILD-TYPE" 
       TCGA-IB-7646        TCGA-IB-7647        TCGA-IB-7649        TCGA-IB-7651 
"AFAP1L2 WILD-TYPE" "AFAP1L2 WILD-TYPE" "AFAP1L2 WILD-TYPE"   "AFAP1L2 MUTATED" 
       TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-7886        TCGA-IB-7887 
"AFAP1L2 WILD-TYPE" "AFAP1L2 WILD-TYPE" "AFAP1L2 WILD-TYPE" "AFAP1L2 WILD-TYPE" 
       TCGA-IB-7888        TCGA-IB-7889        TCGA-IB-7890        TCGA-IB-7891 
  "AFAP1L2 MUTATED" "AFAP1L2 WILD-TYPE"   "AFAP1L2 MUTATED" "AFAP1L2 WILD-TYPE" 
       TCGA-IB-7893        TCGA-IB-7897        TCGA-IB-8126        TCGA-IB-8127 
"AFAP1L2 WILD-TYPE" "AFAP1L2 WILD-TYPE" "AFAP1L2 WILD-TYPE" "AFAP1L2 WILD-TYPE" 
       TCGA-IB-A5SO        TCGA-IB-A5SP        TCGA-IB-A5SQ        TCGA-IB-A5SS 
"AFAP1L2 WILD-TYPE" "AFAP1L2 WILD-TYPE" "AFAP1L2 WILD-TYPE" "AFAP1L2 WILD-TYPE" 
       TCGA-IB-A5ST        TCGA-IB-A6UG        TCGA-LB-A7SX        TCGA-OE-A75W 
"AFAP1L2 WILD-TYPE" "AFAP1L2 WILD-TYPE" "AFAP1L2 WILD-TYPE" "AFAP1L2 WILD-TYPE" 
       TCGA-PZ-A5RE        TCGA-Q3-A5QY        TCGA-US-A779        TCGA-US-A77E 
"AFAP1L2 WILD-TYPE" "AFAP1L2 WILD-TYPE"   "AFAP1L2 MUTATED" "AFAP1L2 WILD-TYPE" 
       TCGA-US-A77J 
"AFAP1L2 WILD-TYPE" 
[1] "hr=" "1.2"
D415V2, continuous
                   vv
clus                STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  AFAP1L2 MUTATED          0        1         1         6         0        0
  AFAP1L2 WILD-TYPE        1        3        10        45         2        3
D415V3, multiclass
                   vv
clus                T1+T2 T3+T4
  AFAP1L2 MUTATED       1     7
  AFAP1L2 WILD-TYPE     5    59
D415V4, multiclass
       clus
vv      AFAP1L2 MUTATED AFAP1L2 WILD-TYPE
  T1+T2               1                 5
  T3+T4               7                59
D415V5, binary
                   cls
clus                 0  1
  AFAP1L2 MUTATED    2  6
  AFAP1L2 WILD-TYPE 15 48
[1] "tbl2"
                   cls
clus                [,1] [,2]
  AFAP1L2 MUTATED      2    6
  AFAP1L2 WILD-TYPE   15   48
   clus
vv  AFAP1L2 MUTATED AFAP1L2 WILD-TYPE
  0               2                15
  1               6                48
                   vv
clus                M0 M1 MX
  AFAP1L2 MUTATED    4  0  4
  AFAP1L2 WILD-TYPE 35  3 26
D415V6, multiclass
    clus
vv   AFAP1L2 MUTATED AFAP1L2 WILD-TYPE
  M0               4                35
  M1               0                 3
  MX               4                26
D415V7, binary
                   cls
clus                 0  1
  AFAP1L2 MUTATED    5  3
  AFAP1L2 WILD-TYPE 31 33
[1] "tbl2"
                   cls
clus                [,1] [,2]
  AFAP1L2 MUTATED      5    3
  AFAP1L2 WILD-TYPE   31   33
        clus
vv       AFAP1L2 MUTATED AFAP1L2 WILD-TYPE
  FEMALE               5                31
  MALE                 3                33
                   vv
clus                PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  AFAP1L2 MUTATED                                     8
  AFAP1L2 WILD-TYPE                                  57
                   vv
clus                PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  AFAP1L2 MUTATED                                       0
  AFAP1L2 WILD-TYPE                                     4
                   vv
clus                PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  AFAP1L2 MUTATED                                                  0
  AFAP1L2 WILD-TYPE                                                2
D415V8, multiclass
                                                  clus
vv                                                 AFAP1L2 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                            8
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                          0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA               0
                                                  clus
vv                                                 AFAP1L2 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                             57
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                            4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                 2
D415V9, continuous
[1] "Remove cluster labels:" "AFAP1L2 MUTATED"       
clus
  AFAP1L2 MUTATED AFAP1L2 WILD-TYPE 
                2                20 
       TCGA-F2-6880        TCGA-FB-A4P6        TCGA-FB-A5VM        TCGA-FB-A78T 
"AFAP1L2 WILD-TYPE" "AFAP1L2 WILD-TYPE" "AFAP1L2 WILD-TYPE" "AFAP1L2 WILD-TYPE" 
       TCGA-FB-A7DR        TCGA-H6-8124        TCGA-H6-A45N        TCGA-H8-A6C1 
"AFAP1L2 WILD-TYPE" "AFAP1L2 WILD-TYPE" "AFAP1L2 WILD-TYPE" "AFAP1L2 WILD-TYPE" 
       TCGA-IB-7644        TCGA-IB-7649        TCGA-IB-7885        TCGA-IB-7886 
"AFAP1L2 WILD-TYPE" "AFAP1L2 WILD-TYPE" "AFAP1L2 WILD-TYPE" "AFAP1L2 WILD-TYPE" 
       TCGA-IB-7887        TCGA-IB-7891        TCGA-IB-8126        TCGA-IB-8127 
"AFAP1L2 WILD-TYPE" "AFAP1L2 WILD-TYPE" "AFAP1L2 WILD-TYPE" "AFAP1L2 WILD-TYPE" 
       TCGA-IB-A5SS        TCGA-IB-A6UG        TCGA-LB-A7SX        TCGA-OE-A75W 
"AFAP1L2 WILD-TYPE" "AFAP1L2 WILD-TYPE" "AFAP1L2 WILD-TYPE" "AFAP1L2 WILD-TYPE" 
D415V10, continuous
[1] "Remove cluster labels:" "AFAP1L2 MUTATED"       
clus
  AFAP1L2 MUTATED AFAP1L2 WILD-TYPE 
                2                17 
       TCGA-FB-A4P6        TCGA-FB-A5VM        TCGA-FB-A78T        TCGA-FB-A7DR 
"AFAP1L2 WILD-TYPE" "AFAP1L2 WILD-TYPE" "AFAP1L2 WILD-TYPE" "AFAP1L2 WILD-TYPE" 
       TCGA-H6-8124        TCGA-H8-A6C1        TCGA-IB-7644        TCGA-IB-7649 
"AFAP1L2 WILD-TYPE" "AFAP1L2 WILD-TYPE" "AFAP1L2 WILD-TYPE" "AFAP1L2 WILD-TYPE" 
       TCGA-IB-7885        TCGA-IB-7886        TCGA-IB-7891        TCGA-IB-8126 
"AFAP1L2 WILD-TYPE" "AFAP1L2 WILD-TYPE" "AFAP1L2 WILD-TYPE" "AFAP1L2 WILD-TYPE" 
       TCGA-IB-8127        TCGA-IB-A5SS        TCGA-IB-A6UG        TCGA-LB-A7SX 
"AFAP1L2 WILD-TYPE" "AFAP1L2 WILD-TYPE" "AFAP1L2 WILD-TYPE" "AFAP1L2 WILD-TYPE" 
       TCGA-OE-A75W 
"AFAP1L2 WILD-TYPE" 
                   vv
clus                R0 R1 RX
  AFAP1L2 MUTATED    6  1  0
  AFAP1L2 WILD-TYPE 36 23  2
D415V11, multiclass
    clus
vv   AFAP1L2 MUTATED AFAP1L2 WILD-TYPE
  R0               6                36
  R1               1                23
  RX               0                 2
D415V12, continuous

Clustering(416) Variable = RBBP8 MUTATION ANALYSIS
D416V1, survival
                 sevent
clus2              0  1
  RBBP8 MUTATED    4  3
  RBBP8 WILD-TYPE 36 26
  RBBP8 MUTATED RBBP8 WILD-TYPE 
              7              62 
  RBBP8 MUTATED RBBP8 WILD-TYPE 
              3              26 
$`RBBP8 MUTATED`
TCGA-F2-6880 TCGA-FZ-5923 TCGA-H6-8124 TCGA-HZ-7919 TCGA-HZ-A49H TCGA-IB-7651 
        9.70        20.81        12.89         0.66         0.95        19.82 
TCGA-IB-7888 
       43.79 

$`RBBP8 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H TCGA-FB-A4P5 
       10.98        11.84         7.10         5.03        19.27         0.13 
TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR TCGA-FZ-5920 
       11.93        12.66         2.47         0.03         5.46         2.01 
TCGA-FZ-5922 TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-7922 
       36.20         7.66        13.02         7.89         0.92         0.13 
TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 
        0.26        12.13        11.87         0.26         0.62         0.79 
TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8636 TCGA-HZ-8638 
        0.69         3.95         0.92         0.53         0.16         2.99 
TCGA-HZ-A49G TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7646 
        0.76         6.38         1.51        11.41        49.38         4.77 
TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 
       21.90        15.35        15.65        27.98         4.04         3.62 
TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-8126 
       15.81        19.66        16.04         3.85        15.98         0.56 
TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST 
       17.16        10.82         9.86         7.20        15.12         0.26 
TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 
        1.35         4.18         3.62         8.12        13.68        16.80 
TCGA-US-A77E TCGA-US-A77J 
       14.14        18.67 

  RBBP8 MUTATED RBBP8 WILD-TYPE 
           0.66            0.03 
  RBBP8 MUTATED RBBP8 WILD-TYPE 
          43.79           49.38 
  RBBP8 MUTATED RBBP8 WILD-TYPE 
          12.89            7.15 
[1] "0.7 - 43.8 (12.9)" "0.0 - 49.4 (7.2)" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"RBBP8 WILD-TYPE"   "RBBP8 MUTATED" "RBBP8 WILD-TYPE" "RBBP8 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"RBBP8 WILD-TYPE" "RBBP8 WILD-TYPE" "RBBP8 WILD-TYPE" "RBBP8 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"RBBP8 WILD-TYPE" "RBBP8 WILD-TYPE" "RBBP8 WILD-TYPE" "RBBP8 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"RBBP8 WILD-TYPE" "RBBP8 WILD-TYPE"   "RBBP8 MUTATED"   "RBBP8 MUTATED" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"RBBP8 WILD-TYPE" "RBBP8 WILD-TYPE" "RBBP8 WILD-TYPE" "RBBP8 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
  "RBBP8 MUTATED" "RBBP8 WILD-TYPE" "RBBP8 WILD-TYPE" "RBBP8 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"RBBP8 WILD-TYPE" "RBBP8 WILD-TYPE" "RBBP8 WILD-TYPE" "RBBP8 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"RBBP8 WILD-TYPE" "RBBP8 WILD-TYPE" "RBBP8 WILD-TYPE" "RBBP8 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"RBBP8 WILD-TYPE" "RBBP8 WILD-TYPE" "RBBP8 WILD-TYPE"   "RBBP8 MUTATED" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"RBBP8 WILD-TYPE" "RBBP8 WILD-TYPE" "RBBP8 WILD-TYPE" "RBBP8 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"RBBP8 WILD-TYPE" "RBBP8 WILD-TYPE" "RBBP8 WILD-TYPE"   "RBBP8 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"RBBP8 WILD-TYPE" "RBBP8 WILD-TYPE" "RBBP8 WILD-TYPE" "RBBP8 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
  "RBBP8 MUTATED" "RBBP8 WILD-TYPE" "RBBP8 WILD-TYPE" "RBBP8 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"RBBP8 WILD-TYPE" "RBBP8 WILD-TYPE" "RBBP8 WILD-TYPE" "RBBP8 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"RBBP8 WILD-TYPE" "RBBP8 WILD-TYPE" "RBBP8 WILD-TYPE" "RBBP8 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"RBBP8 WILD-TYPE" "RBBP8 WILD-TYPE" "RBBP8 WILD-TYPE" "RBBP8 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"RBBP8 WILD-TYPE" "RBBP8 WILD-TYPE" "RBBP8 WILD-TYPE" "RBBP8 WILD-TYPE" 
     TCGA-US-A77J 
"RBBP8 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"RBBP8 WILD-TYPE"   "RBBP8 MUTATED" "RBBP8 WILD-TYPE" "RBBP8 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"RBBP8 WILD-TYPE" "RBBP8 WILD-TYPE" "RBBP8 WILD-TYPE" "RBBP8 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"RBBP8 WILD-TYPE" "RBBP8 WILD-TYPE" "RBBP8 WILD-TYPE" "RBBP8 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"RBBP8 WILD-TYPE" "RBBP8 WILD-TYPE"   "RBBP8 MUTATED"   "RBBP8 MUTATED" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"RBBP8 WILD-TYPE" "RBBP8 WILD-TYPE" "RBBP8 WILD-TYPE" "RBBP8 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
  "RBBP8 MUTATED" "RBBP8 WILD-TYPE" "RBBP8 WILD-TYPE" "RBBP8 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"RBBP8 WILD-TYPE" "RBBP8 WILD-TYPE" "RBBP8 WILD-TYPE" "RBBP8 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"RBBP8 WILD-TYPE" "RBBP8 WILD-TYPE" "RBBP8 WILD-TYPE" "RBBP8 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"RBBP8 WILD-TYPE" "RBBP8 WILD-TYPE" "RBBP8 WILD-TYPE"   "RBBP8 MUTATED" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"RBBP8 WILD-TYPE" "RBBP8 WILD-TYPE" "RBBP8 WILD-TYPE" "RBBP8 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"RBBP8 WILD-TYPE" "RBBP8 WILD-TYPE" "RBBP8 WILD-TYPE"   "RBBP8 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"RBBP8 WILD-TYPE" "RBBP8 WILD-TYPE" "RBBP8 WILD-TYPE" "RBBP8 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
  "RBBP8 MUTATED" "RBBP8 WILD-TYPE" "RBBP8 WILD-TYPE" "RBBP8 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"RBBP8 WILD-TYPE" "RBBP8 WILD-TYPE" "RBBP8 WILD-TYPE" "RBBP8 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"RBBP8 WILD-TYPE" "RBBP8 WILD-TYPE" "RBBP8 WILD-TYPE" "RBBP8 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"RBBP8 WILD-TYPE" "RBBP8 WILD-TYPE" "RBBP8 WILD-TYPE" "RBBP8 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"RBBP8 WILD-TYPE" "RBBP8 WILD-TYPE" "RBBP8 WILD-TYPE" "RBBP8 WILD-TYPE" 
     TCGA-US-A77J 
"RBBP8 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"RBBP8 WILD-TYPE"   "RBBP8 MUTATED" "RBBP8 WILD-TYPE" "RBBP8 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"RBBP8 WILD-TYPE" "RBBP8 WILD-TYPE" "RBBP8 WILD-TYPE" "RBBP8 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"RBBP8 WILD-TYPE" "RBBP8 WILD-TYPE" "RBBP8 WILD-TYPE" "RBBP8 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"RBBP8 WILD-TYPE" "RBBP8 WILD-TYPE"   "RBBP8 MUTATED"   "RBBP8 MUTATED" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"RBBP8 WILD-TYPE" "RBBP8 WILD-TYPE" "RBBP8 WILD-TYPE" "RBBP8 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
  "RBBP8 MUTATED" "RBBP8 WILD-TYPE" "RBBP8 WILD-TYPE" "RBBP8 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"RBBP8 WILD-TYPE" "RBBP8 WILD-TYPE" "RBBP8 WILD-TYPE" "RBBP8 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"RBBP8 WILD-TYPE" "RBBP8 WILD-TYPE" "RBBP8 WILD-TYPE" "RBBP8 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"RBBP8 WILD-TYPE" "RBBP8 WILD-TYPE" "RBBP8 WILD-TYPE"   "RBBP8 MUTATED" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"RBBP8 WILD-TYPE" "RBBP8 WILD-TYPE" "RBBP8 WILD-TYPE" "RBBP8 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"RBBP8 WILD-TYPE" "RBBP8 WILD-TYPE" "RBBP8 WILD-TYPE"   "RBBP8 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"RBBP8 WILD-TYPE" "RBBP8 WILD-TYPE" "RBBP8 WILD-TYPE" "RBBP8 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
  "RBBP8 MUTATED" "RBBP8 WILD-TYPE" "RBBP8 WILD-TYPE" "RBBP8 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"RBBP8 WILD-TYPE" "RBBP8 WILD-TYPE" "RBBP8 WILD-TYPE" "RBBP8 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"RBBP8 WILD-TYPE" "RBBP8 WILD-TYPE" "RBBP8 WILD-TYPE" "RBBP8 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"RBBP8 WILD-TYPE" "RBBP8 WILD-TYPE" "RBBP8 WILD-TYPE" "RBBP8 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"RBBP8 WILD-TYPE" "RBBP8 WILD-TYPE" "RBBP8 WILD-TYPE" "RBBP8 WILD-TYPE" 
     TCGA-US-A77J 
"RBBP8 WILD-TYPE" 
[1] "hr=" "2.1"
D416V2, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  RBBP8 MUTATED          0        0         1         5         0        1
  RBBP8 WILD-TYPE        1        4        10        46         2        2
D416V3, multiclass
                 vv
clus              T1+T2 T3+T4
  RBBP8 MUTATED       0     7
  RBBP8 WILD-TYPE     6    59
D416V4, multiclass
       clus
vv      RBBP8 MUTATED RBBP8 WILD-TYPE
  T1+T2             0               6
  T3+T4             7              59
D416V5, binary
                 cls
clus               0  1
  RBBP8 MUTATED    1  6
  RBBP8 WILD-TYPE 16 48
[1] "tbl2"
                 cls
clus              [,1] [,2]
  RBBP8 MUTATED      1    6
  RBBP8 WILD-TYPE   16   48
   clus
vv  RBBP8 MUTATED RBBP8 WILD-TYPE
  0             1              16
  1             6              48
                 vv
clus              M0 M1 MX
  RBBP8 MUTATED    5  1  1
  RBBP8 WILD-TYPE 34  2 29
D416V6, multiclass
    clus
vv   RBBP8 MUTATED RBBP8 WILD-TYPE
  M0             5              34
  M1             1               2
  MX             1              29
D416V7, binary
                 cls
clus               0  1
  RBBP8 MUTATED    5  2
  RBBP8 WILD-TYPE 31 34
[1] "tbl2"
                 cls
clus              [,1] [,2]
  RBBP8 MUTATED      5    2
  RBBP8 WILD-TYPE   31   34
        clus
vv       RBBP8 MUTATED RBBP8 WILD-TYPE
  FEMALE             5              31
  MALE               2              34
                 vv
clus              PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  RBBP8 MUTATED                                     7
  RBBP8 WILD-TYPE                                  58
                 vv
clus              PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  RBBP8 MUTATED                                       0
  RBBP8 WILD-TYPE                                     4
                 vv
clus              PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  RBBP8 MUTATED                                                  0
  RBBP8 WILD-TYPE                                                2
D416V8, multiclass
                                                  clus
vv                                                 RBBP8 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                          7
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                        0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA             0
                                                  clus
vv                                                 RBBP8 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                           58
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                          4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA               2
D416V9, continuous
D416V10, continuous
[1] "Remove cluster labels:" "RBBP8 MUTATED"         
clus
  RBBP8 MUTATED RBBP8 WILD-TYPE 
              2              17 
     TCGA-FB-A4P5      TCGA-FB-A4P6      TCGA-FB-A5VM      TCGA-FB-A78T 
"RBBP8 WILD-TYPE" "RBBP8 WILD-TYPE" "RBBP8 WILD-TYPE" "RBBP8 WILD-TYPE" 
     TCGA-FB-A7DR      TCGA-H8-A6C1      TCGA-IB-7644      TCGA-IB-7649 
"RBBP8 WILD-TYPE" "RBBP8 WILD-TYPE" "RBBP8 WILD-TYPE" "RBBP8 WILD-TYPE" 
     TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7891      TCGA-IB-8126 
"RBBP8 WILD-TYPE" "RBBP8 WILD-TYPE" "RBBP8 WILD-TYPE" "RBBP8 WILD-TYPE" 
     TCGA-IB-8127      TCGA-IB-A5SS      TCGA-IB-A6UG      TCGA-LB-A7SX 
"RBBP8 WILD-TYPE" "RBBP8 WILD-TYPE" "RBBP8 WILD-TYPE" "RBBP8 WILD-TYPE" 
     TCGA-OE-A75W 
"RBBP8 WILD-TYPE" 
                 vv
clus              R0 R1 RX
  RBBP8 MUTATED    6  1  0
  RBBP8 WILD-TYPE 36 23  2
D416V11, multiclass
    clus
vv   RBBP8 MUTATED RBBP8 WILD-TYPE
  R0             6              36
  R1             1              23
  RX             0               2
D416V12, continuous

Clustering(417) Variable = MAMLD1 MUTATION ANALYSIS
D417V1, survival
                  sevent
clus2               0  1
  MAMLD1 MUTATED    4  3
  MAMLD1 WILD-TYPE 36 26
  MAMLD1 MUTATED MAMLD1 WILD-TYPE 
               7               62 
  MAMLD1 MUTATED MAMLD1 WILD-TYPE 
               3               26 
$`MAMLD1 MUTATED`
TCGA-H8-A6C1 TCGA-HZ-7926 TCGA-HZ-8315 TCGA-HZ-A49G TCGA-IB-7651 TCGA-IB-7887 
       13.02         0.26         0.92         0.76        19.82         3.62 
TCGA-IB-7893 
        3.85 

$`MAMLD1 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P5 TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR 
        0.13        11.93        12.66         2.47         0.03         5.46 
TCGA-FZ-5920 TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-HZ-7289 
        2.01        36.20        20.81        12.89         7.66         7.89 
TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 
        0.92         0.66         0.13         0.26        12.13        11.87 
TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8317 TCGA-HZ-8636 
        0.62         0.79         0.69         3.95         0.53         0.16 
TCGA-HZ-8638 TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7645 
        2.99         0.95         6.38         1.51        11.41        49.38 
TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7886 
        4.77        21.90        15.35        15.65        27.98         4.04 
TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-7897 TCGA-IB-8126 
       43.79        15.81        19.66        16.04        15.98         0.56 
TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST 
       17.16        10.82         9.86         7.20        15.12         0.26 
TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 
        1.35         4.18         3.62         8.12        13.68        16.80 
TCGA-US-A77E TCGA-US-A77J 
       14.14        18.67 

  MAMLD1 MUTATED MAMLD1 WILD-TYPE 
            0.26             0.03 
  MAMLD1 MUTATED MAMLD1 WILD-TYPE 
           19.82            49.38 
  MAMLD1 MUTATED MAMLD1 WILD-TYPE 
           3.620            8.005 
[1] "0.3 - 19.8 (3.6)" "0.0 - 49.4 (8.0)"
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
"MAMLD1 WILD-TYPE" "MAMLD1 WILD-TYPE" "MAMLD1 WILD-TYPE" "MAMLD1 WILD-TYPE" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"MAMLD1 WILD-TYPE" "MAMLD1 WILD-TYPE" "MAMLD1 WILD-TYPE" "MAMLD1 WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
"MAMLD1 WILD-TYPE" "MAMLD1 WILD-TYPE" "MAMLD1 WILD-TYPE" "MAMLD1 WILD-TYPE" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"MAMLD1 WILD-TYPE" "MAMLD1 WILD-TYPE" "MAMLD1 WILD-TYPE" "MAMLD1 WILD-TYPE" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
"MAMLD1 WILD-TYPE"   "MAMLD1 MUTATED" "MAMLD1 WILD-TYPE" "MAMLD1 WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
"MAMLD1 WILD-TYPE" "MAMLD1 WILD-TYPE" "MAMLD1 WILD-TYPE" "MAMLD1 WILD-TYPE" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"MAMLD1 WILD-TYPE"   "MAMLD1 MUTATED" "MAMLD1 WILD-TYPE" "MAMLD1 WILD-TYPE" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
"MAMLD1 WILD-TYPE" "MAMLD1 WILD-TYPE"   "MAMLD1 MUTATED" "MAMLD1 WILD-TYPE" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
"MAMLD1 WILD-TYPE" "MAMLD1 WILD-TYPE"   "MAMLD1 MUTATED" "MAMLD1 WILD-TYPE" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
"MAMLD1 WILD-TYPE" "MAMLD1 WILD-TYPE" "MAMLD1 WILD-TYPE" "MAMLD1 WILD-TYPE" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
"MAMLD1 WILD-TYPE" "MAMLD1 WILD-TYPE" "MAMLD1 WILD-TYPE"   "MAMLD1 MUTATED" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
"MAMLD1 WILD-TYPE" "MAMLD1 WILD-TYPE" "MAMLD1 WILD-TYPE"   "MAMLD1 MUTATED" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
"MAMLD1 WILD-TYPE" "MAMLD1 WILD-TYPE" "MAMLD1 WILD-TYPE" "MAMLD1 WILD-TYPE" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
  "MAMLD1 MUTATED" "MAMLD1 WILD-TYPE" "MAMLD1 WILD-TYPE" "MAMLD1 WILD-TYPE" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"MAMLD1 WILD-TYPE" "MAMLD1 WILD-TYPE" "MAMLD1 WILD-TYPE" "MAMLD1 WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"MAMLD1 WILD-TYPE" "MAMLD1 WILD-TYPE" "MAMLD1 WILD-TYPE" "MAMLD1 WILD-TYPE" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
"MAMLD1 WILD-TYPE" "MAMLD1 WILD-TYPE" "MAMLD1 WILD-TYPE" "MAMLD1 WILD-TYPE" 
      TCGA-US-A77J 
"MAMLD1 WILD-TYPE" 
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
"MAMLD1 WILD-TYPE" "MAMLD1 WILD-TYPE" "MAMLD1 WILD-TYPE" "MAMLD1 WILD-TYPE" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"MAMLD1 WILD-TYPE" "MAMLD1 WILD-TYPE" "MAMLD1 WILD-TYPE" "MAMLD1 WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
"MAMLD1 WILD-TYPE" "MAMLD1 WILD-TYPE" "MAMLD1 WILD-TYPE" "MAMLD1 WILD-TYPE" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"MAMLD1 WILD-TYPE" "MAMLD1 WILD-TYPE" "MAMLD1 WILD-TYPE" "MAMLD1 WILD-TYPE" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
"MAMLD1 WILD-TYPE"   "MAMLD1 MUTATED" "MAMLD1 WILD-TYPE" "MAMLD1 WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
"MAMLD1 WILD-TYPE" "MAMLD1 WILD-TYPE" "MAMLD1 WILD-TYPE" "MAMLD1 WILD-TYPE" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"MAMLD1 WILD-TYPE"   "MAMLD1 MUTATED" "MAMLD1 WILD-TYPE" "MAMLD1 WILD-TYPE" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
"MAMLD1 WILD-TYPE" "MAMLD1 WILD-TYPE"   "MAMLD1 MUTATED" "MAMLD1 WILD-TYPE" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
"MAMLD1 WILD-TYPE" "MAMLD1 WILD-TYPE"   "MAMLD1 MUTATED" "MAMLD1 WILD-TYPE" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
"MAMLD1 WILD-TYPE" "MAMLD1 WILD-TYPE" "MAMLD1 WILD-TYPE" "MAMLD1 WILD-TYPE" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
"MAMLD1 WILD-TYPE" "MAMLD1 WILD-TYPE" "MAMLD1 WILD-TYPE"   "MAMLD1 MUTATED" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
"MAMLD1 WILD-TYPE" "MAMLD1 WILD-TYPE" "MAMLD1 WILD-TYPE"   "MAMLD1 MUTATED" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
"MAMLD1 WILD-TYPE" "MAMLD1 WILD-TYPE" "MAMLD1 WILD-TYPE" "MAMLD1 WILD-TYPE" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
  "MAMLD1 MUTATED" "MAMLD1 WILD-TYPE" "MAMLD1 WILD-TYPE" "MAMLD1 WILD-TYPE" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"MAMLD1 WILD-TYPE" "MAMLD1 WILD-TYPE" "MAMLD1 WILD-TYPE" "MAMLD1 WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"MAMLD1 WILD-TYPE" "MAMLD1 WILD-TYPE" "MAMLD1 WILD-TYPE" "MAMLD1 WILD-TYPE" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
"MAMLD1 WILD-TYPE" "MAMLD1 WILD-TYPE" "MAMLD1 WILD-TYPE" "MAMLD1 WILD-TYPE" 
      TCGA-US-A77J 
"MAMLD1 WILD-TYPE" 
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
"MAMLD1 WILD-TYPE" "MAMLD1 WILD-TYPE" "MAMLD1 WILD-TYPE" "MAMLD1 WILD-TYPE" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"MAMLD1 WILD-TYPE" "MAMLD1 WILD-TYPE" "MAMLD1 WILD-TYPE" "MAMLD1 WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
"MAMLD1 WILD-TYPE" "MAMLD1 WILD-TYPE" "MAMLD1 WILD-TYPE" "MAMLD1 WILD-TYPE" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"MAMLD1 WILD-TYPE" "MAMLD1 WILD-TYPE" "MAMLD1 WILD-TYPE" "MAMLD1 WILD-TYPE" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
"MAMLD1 WILD-TYPE"   "MAMLD1 MUTATED" "MAMLD1 WILD-TYPE" "MAMLD1 WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
"MAMLD1 WILD-TYPE" "MAMLD1 WILD-TYPE" "MAMLD1 WILD-TYPE" "MAMLD1 WILD-TYPE" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"MAMLD1 WILD-TYPE"   "MAMLD1 MUTATED" "MAMLD1 WILD-TYPE" "MAMLD1 WILD-TYPE" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
"MAMLD1 WILD-TYPE" "MAMLD1 WILD-TYPE"   "MAMLD1 MUTATED" "MAMLD1 WILD-TYPE" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
"MAMLD1 WILD-TYPE" "MAMLD1 WILD-TYPE"   "MAMLD1 MUTATED" "MAMLD1 WILD-TYPE" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
"MAMLD1 WILD-TYPE" "MAMLD1 WILD-TYPE" "MAMLD1 WILD-TYPE" "MAMLD1 WILD-TYPE" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
"MAMLD1 WILD-TYPE" "MAMLD1 WILD-TYPE" "MAMLD1 WILD-TYPE"   "MAMLD1 MUTATED" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
"MAMLD1 WILD-TYPE" "MAMLD1 WILD-TYPE" "MAMLD1 WILD-TYPE"   "MAMLD1 MUTATED" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
"MAMLD1 WILD-TYPE" "MAMLD1 WILD-TYPE" "MAMLD1 WILD-TYPE" "MAMLD1 WILD-TYPE" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
  "MAMLD1 MUTATED" "MAMLD1 WILD-TYPE" "MAMLD1 WILD-TYPE" "MAMLD1 WILD-TYPE" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"MAMLD1 WILD-TYPE" "MAMLD1 WILD-TYPE" "MAMLD1 WILD-TYPE" "MAMLD1 WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"MAMLD1 WILD-TYPE" "MAMLD1 WILD-TYPE" "MAMLD1 WILD-TYPE" "MAMLD1 WILD-TYPE" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
"MAMLD1 WILD-TYPE" "MAMLD1 WILD-TYPE" "MAMLD1 WILD-TYPE" "MAMLD1 WILD-TYPE" 
      TCGA-US-A77J 
"MAMLD1 WILD-TYPE" 
[1] "hr=" "1.8"
D417V2, continuous
                  vv
clus               STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  MAMLD1 MUTATED          0        0         3         4         0        0
  MAMLD1 WILD-TYPE        1        4         8        47         2        3
D417V3, multiclass
                  vv
clus               T1+T2 T3+T4
  MAMLD1 MUTATED       1     6
  MAMLD1 WILD-TYPE     5    60
D417V4, multiclass
       clus
vv      MAMLD1 MUTATED MAMLD1 WILD-TYPE
  T1+T2              1                5
  T3+T4              6               60
D417V5, binary
                  cls
clus                0  1
  MAMLD1 MUTATED    3  4
  MAMLD1 WILD-TYPE 14 50
[1] "tbl2"
                  cls
clus               [,1] [,2]
  MAMLD1 MUTATED      3    4
  MAMLD1 WILD-TYPE   14   50
   clus
vv  MAMLD1 MUTATED MAMLD1 WILD-TYPE
  0              3               14
  1              4               50
                  vv
clus               M0 M1 MX
  MAMLD1 MUTATED    3  0  4
  MAMLD1 WILD-TYPE 36  3 26
D417V6, multiclass
    clus
vv   MAMLD1 MUTATED MAMLD1 WILD-TYPE
  M0              3               36
  M1              0                3
  MX              4               26
D417V7, binary
                  cls
clus                0  1
  MAMLD1 MUTATED    4  3
  MAMLD1 WILD-TYPE 32 33
[1] "tbl2"
                  cls
clus               [,1] [,2]
  MAMLD1 MUTATED      4    3
  MAMLD1 WILD-TYPE   32   33
        clus
vv       MAMLD1 MUTATED MAMLD1 WILD-TYPE
  FEMALE              4               32
  MALE                3               33
                  vv
clus               PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  MAMLD1 MUTATED                                     6
  MAMLD1 WILD-TYPE                                  59
                  vv
clus               PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  MAMLD1 MUTATED                                       1
  MAMLD1 WILD-TYPE                                     3
                  vv
clus               PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  MAMLD1 MUTATED                                                  0
  MAMLD1 WILD-TYPE                                                2
D417V8, multiclass
                                                  clus
vv                                                 MAMLD1 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                           6
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                         1
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA              0
                                                  clus
vv                                                 MAMLD1 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                            59
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                           3
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                2
D417V9, continuous
D417V10, continuous
[1] "Remove cluster labels:" "MAMLD1 MUTATED"        
clus
  MAMLD1 MUTATED MAMLD1 WILD-TYPE 
               2               17 
      TCGA-FB-A4P5       TCGA-FB-A4P6       TCGA-FB-A5VM       TCGA-FB-A78T 
"MAMLD1 WILD-TYPE" "MAMLD1 WILD-TYPE" "MAMLD1 WILD-TYPE" "MAMLD1 WILD-TYPE" 
      TCGA-FB-A7DR       TCGA-H6-8124       TCGA-IB-7644       TCGA-IB-7649 
"MAMLD1 WILD-TYPE" "MAMLD1 WILD-TYPE" "MAMLD1 WILD-TYPE" "MAMLD1 WILD-TYPE" 
      TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7891       TCGA-IB-8126 
"MAMLD1 WILD-TYPE" "MAMLD1 WILD-TYPE" "MAMLD1 WILD-TYPE" "MAMLD1 WILD-TYPE" 
      TCGA-IB-8127       TCGA-IB-A5SS       TCGA-IB-A6UG       TCGA-LB-A7SX 
"MAMLD1 WILD-TYPE" "MAMLD1 WILD-TYPE" "MAMLD1 WILD-TYPE" "MAMLD1 WILD-TYPE" 
      TCGA-OE-A75W 
"MAMLD1 WILD-TYPE" 
                  vv
clus               R0 R1 RX
  MAMLD1 MUTATED    3  3  1
  MAMLD1 WILD-TYPE 39 21  1
D417V11, multiclass
    clus
vv   MAMLD1 MUTATED MAMLD1 WILD-TYPE
  R0              3               39
  R1              3               21
  RX              1                1
D417V12, continuous

Clustering(418) Variable = FOXN2 MUTATION ANALYSIS
D418V1, survival
                 sevent
clus2              0  1
  FOXN2 MUTATED    1  2
  FOXN2 WILD-TYPE 39 27
  FOXN2 MUTATED FOXN2 WILD-TYPE 
              3              66 
  FOXN2 MUTATED FOXN2 WILD-TYPE 
              2              27 
$`FOXN2 MUTATED`
TCGA-HZ-7922 TCGA-IB-7887 TCGA-IB-7897 
        0.13         3.62        15.98 

$`FOXN2 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P5 TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR 
        0.13        11.93        12.66         2.47         0.03         5.46 
TCGA-FZ-5920 TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 
        2.01        36.20        20.81        12.89         7.66        13.02 
TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 
        7.89         0.92         0.66         0.26        12.13        11.87 
TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 
        0.26         0.62         0.79         0.69         3.95         0.92 
TCGA-HZ-8317 TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH 
        0.53         0.16         2.99         0.76         0.95         6.38 
TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 
        1.51        11.41        49.38         4.77        21.90        15.35 
TCGA-IB-7651 TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7888 TCGA-IB-7889 
       19.82        15.65        27.98         4.04        43.79        15.81 
TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO 
       19.66        16.04         3.85         0.56        17.16        10.82 
TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX 
        9.86         7.20        15.12         0.26         1.35         4.18 
TCGA-OE-A75W TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
        3.62         8.12        13.68        16.80        14.14        18.67 

  FOXN2 MUTATED FOXN2 WILD-TYPE 
           0.13            0.03 
  FOXN2 MUTATED FOXN2 WILD-TYPE 
          15.98           49.38 
  FOXN2 MUTATED FOXN2 WILD-TYPE 
          3.620           7.775 
[1] "0.1 - 16.0 (3.6)" "0.0 - 49.4 (7.8)"
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"FOXN2 WILD-TYPE" "FOXN2 WILD-TYPE" "FOXN2 WILD-TYPE" "FOXN2 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"FOXN2 WILD-TYPE" "FOXN2 WILD-TYPE" "FOXN2 WILD-TYPE" "FOXN2 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"FOXN2 WILD-TYPE" "FOXN2 WILD-TYPE" "FOXN2 WILD-TYPE" "FOXN2 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"FOXN2 WILD-TYPE" "FOXN2 WILD-TYPE" "FOXN2 WILD-TYPE" "FOXN2 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"FOXN2 WILD-TYPE" "FOXN2 WILD-TYPE" "FOXN2 WILD-TYPE" "FOXN2 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"FOXN2 WILD-TYPE"   "FOXN2 MUTATED" "FOXN2 WILD-TYPE" "FOXN2 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"FOXN2 WILD-TYPE" "FOXN2 WILD-TYPE" "FOXN2 WILD-TYPE" "FOXN2 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"FOXN2 WILD-TYPE" "FOXN2 WILD-TYPE" "FOXN2 WILD-TYPE" "FOXN2 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"FOXN2 WILD-TYPE" "FOXN2 WILD-TYPE" "FOXN2 WILD-TYPE" "FOXN2 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"FOXN2 WILD-TYPE" "FOXN2 WILD-TYPE" "FOXN2 WILD-TYPE" "FOXN2 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"FOXN2 WILD-TYPE" "FOXN2 WILD-TYPE" "FOXN2 WILD-TYPE" "FOXN2 WILD-TYPE" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"FOXN2 WILD-TYPE" "FOXN2 WILD-TYPE" "FOXN2 WILD-TYPE"   "FOXN2 MUTATED" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"FOXN2 WILD-TYPE" "FOXN2 WILD-TYPE" "FOXN2 WILD-TYPE" "FOXN2 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"FOXN2 WILD-TYPE"   "FOXN2 MUTATED" "FOXN2 WILD-TYPE" "FOXN2 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"FOXN2 WILD-TYPE" "FOXN2 WILD-TYPE" "FOXN2 WILD-TYPE" "FOXN2 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"FOXN2 WILD-TYPE" "FOXN2 WILD-TYPE" "FOXN2 WILD-TYPE" "FOXN2 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"FOXN2 WILD-TYPE" "FOXN2 WILD-TYPE" "FOXN2 WILD-TYPE" "FOXN2 WILD-TYPE" 
     TCGA-US-A77J 
"FOXN2 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"FOXN2 WILD-TYPE" "FOXN2 WILD-TYPE" "FOXN2 WILD-TYPE" "FOXN2 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"FOXN2 WILD-TYPE" "FOXN2 WILD-TYPE" "FOXN2 WILD-TYPE" "FOXN2 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"FOXN2 WILD-TYPE" "FOXN2 WILD-TYPE" "FOXN2 WILD-TYPE" "FOXN2 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"FOXN2 WILD-TYPE" "FOXN2 WILD-TYPE" "FOXN2 WILD-TYPE" "FOXN2 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"FOXN2 WILD-TYPE" "FOXN2 WILD-TYPE" "FOXN2 WILD-TYPE" "FOXN2 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"FOXN2 WILD-TYPE"   "FOXN2 MUTATED" "FOXN2 WILD-TYPE" "FOXN2 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"FOXN2 WILD-TYPE" "FOXN2 WILD-TYPE" "FOXN2 WILD-TYPE" "FOXN2 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"FOXN2 WILD-TYPE" "FOXN2 WILD-TYPE" "FOXN2 WILD-TYPE" "FOXN2 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"FOXN2 WILD-TYPE" "FOXN2 WILD-TYPE" "FOXN2 WILD-TYPE" "FOXN2 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"FOXN2 WILD-TYPE" "FOXN2 WILD-TYPE" "FOXN2 WILD-TYPE" "FOXN2 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"FOXN2 WILD-TYPE" "FOXN2 WILD-TYPE" "FOXN2 WILD-TYPE" "FOXN2 WILD-TYPE" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"FOXN2 WILD-TYPE" "FOXN2 WILD-TYPE" "FOXN2 WILD-TYPE"   "FOXN2 MUTATED" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"FOXN2 WILD-TYPE" "FOXN2 WILD-TYPE" "FOXN2 WILD-TYPE" "FOXN2 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"FOXN2 WILD-TYPE"   "FOXN2 MUTATED" "FOXN2 WILD-TYPE" "FOXN2 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"FOXN2 WILD-TYPE" "FOXN2 WILD-TYPE" "FOXN2 WILD-TYPE" "FOXN2 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"FOXN2 WILD-TYPE" "FOXN2 WILD-TYPE" "FOXN2 WILD-TYPE" "FOXN2 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"FOXN2 WILD-TYPE" "FOXN2 WILD-TYPE" "FOXN2 WILD-TYPE" "FOXN2 WILD-TYPE" 
     TCGA-US-A77J 
"FOXN2 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"FOXN2 WILD-TYPE" "FOXN2 WILD-TYPE" "FOXN2 WILD-TYPE" "FOXN2 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"FOXN2 WILD-TYPE" "FOXN2 WILD-TYPE" "FOXN2 WILD-TYPE" "FOXN2 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"FOXN2 WILD-TYPE" "FOXN2 WILD-TYPE" "FOXN2 WILD-TYPE" "FOXN2 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"FOXN2 WILD-TYPE" "FOXN2 WILD-TYPE" "FOXN2 WILD-TYPE" "FOXN2 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"FOXN2 WILD-TYPE" "FOXN2 WILD-TYPE" "FOXN2 WILD-TYPE" "FOXN2 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"FOXN2 WILD-TYPE"   "FOXN2 MUTATED" "FOXN2 WILD-TYPE" "FOXN2 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"FOXN2 WILD-TYPE" "FOXN2 WILD-TYPE" "FOXN2 WILD-TYPE" "FOXN2 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"FOXN2 WILD-TYPE" "FOXN2 WILD-TYPE" "FOXN2 WILD-TYPE" "FOXN2 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"FOXN2 WILD-TYPE" "FOXN2 WILD-TYPE" "FOXN2 WILD-TYPE" "FOXN2 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"FOXN2 WILD-TYPE" "FOXN2 WILD-TYPE" "FOXN2 WILD-TYPE" "FOXN2 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"FOXN2 WILD-TYPE" "FOXN2 WILD-TYPE" "FOXN2 WILD-TYPE" "FOXN2 WILD-TYPE" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"FOXN2 WILD-TYPE" "FOXN2 WILD-TYPE" "FOXN2 WILD-TYPE"   "FOXN2 MUTATED" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"FOXN2 WILD-TYPE" "FOXN2 WILD-TYPE" "FOXN2 WILD-TYPE" "FOXN2 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"FOXN2 WILD-TYPE"   "FOXN2 MUTATED" "FOXN2 WILD-TYPE" "FOXN2 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"FOXN2 WILD-TYPE" "FOXN2 WILD-TYPE" "FOXN2 WILD-TYPE" "FOXN2 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"FOXN2 WILD-TYPE" "FOXN2 WILD-TYPE" "FOXN2 WILD-TYPE" "FOXN2 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"FOXN2 WILD-TYPE" "FOXN2 WILD-TYPE" "FOXN2 WILD-TYPE" "FOXN2 WILD-TYPE" 
     TCGA-US-A77J 
"FOXN2 WILD-TYPE" 
[1] "hr=" "2.8"
D418V2, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  FOXN2 MUTATED          0        0         0         3         0        0
  FOXN2 WILD-TYPE        1        4        11        48         2        3
D418V3, multiclass
                 vv
clus              T1+T2 T3+T4
  FOXN2 MUTATED       0     3
  FOXN2 WILD-TYPE     6    63
D418V4, multiclass
       clus
vv      FOXN2 MUTATED FOXN2 WILD-TYPE
  T1+T2             0               6
  T3+T4             3              63
D418V5, binary
                 cls
clus               0  1
  FOXN2 MUTATED    0  3
  FOXN2 WILD-TYPE 17 51
[1] "tbl2"
                 cls
clus              [,1] [,2]
  FOXN2 MUTATED      0    3
  FOXN2 WILD-TYPE   17   51
   clus
vv  FOXN2 MUTATED FOXN2 WILD-TYPE
  0             0              17
  1             3              51
                 vv
clus              M0 M1 MX
  FOXN2 MUTATED    2  0  1
  FOXN2 WILD-TYPE 37  3 29
D418V6, multiclass
    clus
vv   FOXN2 MUTATED FOXN2 WILD-TYPE
  M0             2              37
  M1             0               3
  MX             1              29
D418V7, binary
                 cls
clus               0  1
  FOXN2 MUTATED    3  0
  FOXN2 WILD-TYPE 33 36
[1] "tbl2"
                 cls
clus              [,1] [,2]
  FOXN2 MUTATED      3    0
  FOXN2 WILD-TYPE   33   36
        clus
vv       FOXN2 MUTATED FOXN2 WILD-TYPE
  FEMALE             3              33
  MALE               0              36
                 vv
clus              PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  FOXN2 MUTATED                                     3
  FOXN2 WILD-TYPE                                  62
                 vv
clus              PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  FOXN2 MUTATED                                       0
  FOXN2 WILD-TYPE                                     4
                 vv
clus              PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  FOXN2 MUTATED                                                  0
  FOXN2 WILD-TYPE                                                2
D418V8, multiclass
                                                  clus
vv                                                 FOXN2 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                          3
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                        0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA             0
                                                  clus
vv                                                 FOXN2 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                           62
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                          4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA               2
D418V9, continuous
[1] "Remove cluster labels:" "FOXN2 MUTATED"         
clus
  FOXN2 MUTATED FOXN2 WILD-TYPE 
              1              21 
     TCGA-F2-6880      TCGA-FB-A4P5      TCGA-FB-A4P6      TCGA-FB-A5VM 
"FOXN2 WILD-TYPE" "FOXN2 WILD-TYPE" "FOXN2 WILD-TYPE" "FOXN2 WILD-TYPE" 
     TCGA-FB-A78T      TCGA-FB-A7DR      TCGA-H6-8124      TCGA-H6-A45N 
"FOXN2 WILD-TYPE" "FOXN2 WILD-TYPE" "FOXN2 WILD-TYPE" "FOXN2 WILD-TYPE" 
     TCGA-H8-A6C1      TCGA-IB-7644      TCGA-IB-7649      TCGA-IB-7651 
"FOXN2 WILD-TYPE" "FOXN2 WILD-TYPE" "FOXN2 WILD-TYPE" "FOXN2 WILD-TYPE" 
     TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7891      TCGA-IB-8126 
"FOXN2 WILD-TYPE" "FOXN2 WILD-TYPE" "FOXN2 WILD-TYPE" "FOXN2 WILD-TYPE" 
     TCGA-IB-8127      TCGA-IB-A5SS      TCGA-IB-A6UG      TCGA-LB-A7SX 
"FOXN2 WILD-TYPE" "FOXN2 WILD-TYPE" "FOXN2 WILD-TYPE" "FOXN2 WILD-TYPE" 
     TCGA-OE-A75W 
"FOXN2 WILD-TYPE" 
D418V10, continuous
                 vv
clus              R0 R1 RX
  FOXN2 MUTATED    2  1  0
  FOXN2 WILD-TYPE 40 23  2
D418V11, multiclass
    clus
vv   FOXN2 MUTATED FOXN2 WILD-TYPE
  R0             2              40
  R1             1              23
  RX             0               2
D418V12, continuous

Clustering(419) Variable = PRF1 MUTATION ANALYSIS
D419V1, survival
                sevent
clus2             0  1
  PRF1 MUTATED    2  4
  PRF1 WILD-TYPE 38 25
  PRF1 MUTATED PRF1 WILD-TYPE 
             6             63 
  PRF1 MUTATED PRF1 WILD-TYPE 
             4             25 
$`PRF1 MUTATED`
TCGA-FZ-5920 TCGA-FZ-5922 TCGA-HZ-8002 TCGA-IB-7651 TCGA-IB-7885 TCGA-IB-7897 
        2.01        36.20         0.79        19.82        27.98        15.98 

$`PRF1 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P5 TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR 
        0.13        11.93        12.66         2.47         0.03         5.46 
TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7289 TCGA-HZ-7918 
       20.81        12.89         7.66        13.02         7.89         0.92 
TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 
        0.66         0.13         0.26        12.13        11.87         0.26 
TCGA-HZ-8001 TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8636 
        0.62         0.69         3.95         0.92         0.53         0.16 
TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 
        2.99         0.76         0.95         6.38         1.51        11.41 
TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7652 TCGA-IB-7886 
       49.38         4.77        21.90        15.35        15.65         4.04 
TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-7893 
        3.62        43.79        15.81        19.66        16.04         3.85 
TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS 
        0.56        17.16        10.82         9.86         7.20        15.12 
TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W TCGA-PZ-A5RE TCGA-Q3-A5QY 
        0.26         1.35         4.18         3.62         8.12        13.68 
TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
       16.80        14.14        18.67 

  PRF1 MUTATED PRF1 WILD-TYPE 
          0.79           0.03 
  PRF1 MUTATED PRF1 WILD-TYPE 
         36.20          49.38 
  PRF1 MUTATED PRF1 WILD-TYPE 
          17.9            7.2 
[1] "0.8 - 36.2 (17.9)" "0.0 - 49.4 (7.2)" 
    TCGA-F2-6879     TCGA-F2-6880     TCGA-F2-7273     TCGA-F2-7276 
"PRF1 WILD-TYPE" "PRF1 WILD-TYPE" "PRF1 WILD-TYPE" "PRF1 WILD-TYPE" 
    TCGA-F2-A44G     TCGA-F2-A44H     TCGA-FB-A4P5     TCGA-FB-A4P6 
"PRF1 WILD-TYPE" "PRF1 WILD-TYPE" "PRF1 WILD-TYPE" "PRF1 WILD-TYPE" 
    TCGA-FB-A545     TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-FB-A7DR 
"PRF1 WILD-TYPE" "PRF1 WILD-TYPE" "PRF1 WILD-TYPE" "PRF1 WILD-TYPE" 
    TCGA-FZ-5920     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-H6-8124 
  "PRF1 MUTATED"   "PRF1 MUTATED" "PRF1 WILD-TYPE" "PRF1 WILD-TYPE" 
    TCGA-H6-A45N     TCGA-H8-A6C1     TCGA-HZ-7289     TCGA-HZ-7918 
"PRF1 WILD-TYPE" "PRF1 WILD-TYPE" "PRF1 WILD-TYPE" "PRF1 WILD-TYPE" 
    TCGA-HZ-7919     TCGA-HZ-7922     TCGA-HZ-7923     TCGA-HZ-7924 
"PRF1 WILD-TYPE" "PRF1 WILD-TYPE" "PRF1 WILD-TYPE" "PRF1 WILD-TYPE" 
    TCGA-HZ-7925     TCGA-HZ-7926     TCGA-HZ-8001     TCGA-HZ-8002 
"PRF1 WILD-TYPE" "PRF1 WILD-TYPE" "PRF1 WILD-TYPE"   "PRF1 MUTATED" 
    TCGA-HZ-8003     TCGA-HZ-8005     TCGA-HZ-8315     TCGA-HZ-8317 
"PRF1 WILD-TYPE" "PRF1 WILD-TYPE" "PRF1 WILD-TYPE" "PRF1 WILD-TYPE" 
    TCGA-HZ-8636     TCGA-HZ-8638     TCGA-HZ-A49G     TCGA-HZ-A49H 
"PRF1 WILD-TYPE" "PRF1 WILD-TYPE" "PRF1 WILD-TYPE" "PRF1 WILD-TYPE" 
    TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-IB-7644     TCGA-IB-7645 
"PRF1 WILD-TYPE" "PRF1 WILD-TYPE" "PRF1 WILD-TYPE" "PRF1 WILD-TYPE" 
    TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7651 
"PRF1 WILD-TYPE" "PRF1 WILD-TYPE" "PRF1 WILD-TYPE"   "PRF1 MUTATED" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887 
"PRF1 WILD-TYPE"   "PRF1 MUTATED" "PRF1 WILD-TYPE" "PRF1 WILD-TYPE" 
    TCGA-IB-7888     TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891 
"PRF1 WILD-TYPE" "PRF1 WILD-TYPE" "PRF1 WILD-TYPE" "PRF1 WILD-TYPE" 
    TCGA-IB-7893     TCGA-IB-7897     TCGA-IB-8126     TCGA-IB-8127 
"PRF1 WILD-TYPE"   "PRF1 MUTATED" "PRF1 WILD-TYPE" "PRF1 WILD-TYPE" 
    TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS 
"PRF1 WILD-TYPE" "PRF1 WILD-TYPE" "PRF1 WILD-TYPE" "PRF1 WILD-TYPE" 
    TCGA-IB-A5ST     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
"PRF1 WILD-TYPE" "PRF1 WILD-TYPE" "PRF1 WILD-TYPE" "PRF1 WILD-TYPE" 
    TCGA-PZ-A5RE     TCGA-Q3-A5QY     TCGA-US-A779     TCGA-US-A77E 
"PRF1 WILD-TYPE" "PRF1 WILD-TYPE" "PRF1 WILD-TYPE" "PRF1 WILD-TYPE" 
    TCGA-US-A77J 
"PRF1 WILD-TYPE" 
    TCGA-F2-6879     TCGA-F2-6880     TCGA-F2-7273     TCGA-F2-7276 
"PRF1 WILD-TYPE" "PRF1 WILD-TYPE" "PRF1 WILD-TYPE" "PRF1 WILD-TYPE" 
    TCGA-F2-A44G     TCGA-F2-A44H     TCGA-FB-A4P5     TCGA-FB-A4P6 
"PRF1 WILD-TYPE" "PRF1 WILD-TYPE" "PRF1 WILD-TYPE" "PRF1 WILD-TYPE" 
    TCGA-FB-A545     TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-FB-A7DR 
"PRF1 WILD-TYPE" "PRF1 WILD-TYPE" "PRF1 WILD-TYPE" "PRF1 WILD-TYPE" 
    TCGA-FZ-5920     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-H6-8124 
  "PRF1 MUTATED"   "PRF1 MUTATED" "PRF1 WILD-TYPE" "PRF1 WILD-TYPE" 
    TCGA-H6-A45N     TCGA-H8-A6C1     TCGA-HZ-7289     TCGA-HZ-7918 
"PRF1 WILD-TYPE" "PRF1 WILD-TYPE" "PRF1 WILD-TYPE" "PRF1 WILD-TYPE" 
    TCGA-HZ-7919     TCGA-HZ-7922     TCGA-HZ-7923     TCGA-HZ-7924 
"PRF1 WILD-TYPE" "PRF1 WILD-TYPE" "PRF1 WILD-TYPE" "PRF1 WILD-TYPE" 
    TCGA-HZ-7925     TCGA-HZ-7926     TCGA-HZ-8001     TCGA-HZ-8002 
"PRF1 WILD-TYPE" "PRF1 WILD-TYPE" "PRF1 WILD-TYPE"   "PRF1 MUTATED" 
    TCGA-HZ-8003     TCGA-HZ-8005     TCGA-HZ-8315     TCGA-HZ-8317 
"PRF1 WILD-TYPE" "PRF1 WILD-TYPE" "PRF1 WILD-TYPE" "PRF1 WILD-TYPE" 
    TCGA-HZ-8636     TCGA-HZ-8638     TCGA-HZ-A49G     TCGA-HZ-A49H 
"PRF1 WILD-TYPE" "PRF1 WILD-TYPE" "PRF1 WILD-TYPE" "PRF1 WILD-TYPE" 
    TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-IB-7644     TCGA-IB-7645 
"PRF1 WILD-TYPE" "PRF1 WILD-TYPE" "PRF1 WILD-TYPE" "PRF1 WILD-TYPE" 
    TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7651 
"PRF1 WILD-TYPE" "PRF1 WILD-TYPE" "PRF1 WILD-TYPE"   "PRF1 MUTATED" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887 
"PRF1 WILD-TYPE"   "PRF1 MUTATED" "PRF1 WILD-TYPE" "PRF1 WILD-TYPE" 
    TCGA-IB-7888     TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891 
"PRF1 WILD-TYPE" "PRF1 WILD-TYPE" "PRF1 WILD-TYPE" "PRF1 WILD-TYPE" 
    TCGA-IB-7893     TCGA-IB-7897     TCGA-IB-8126     TCGA-IB-8127 
"PRF1 WILD-TYPE"   "PRF1 MUTATED" "PRF1 WILD-TYPE" "PRF1 WILD-TYPE" 
    TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS 
"PRF1 WILD-TYPE" "PRF1 WILD-TYPE" "PRF1 WILD-TYPE" "PRF1 WILD-TYPE" 
    TCGA-IB-A5ST     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
"PRF1 WILD-TYPE" "PRF1 WILD-TYPE" "PRF1 WILD-TYPE" "PRF1 WILD-TYPE" 
    TCGA-PZ-A5RE     TCGA-Q3-A5QY     TCGA-US-A779     TCGA-US-A77E 
"PRF1 WILD-TYPE" "PRF1 WILD-TYPE" "PRF1 WILD-TYPE" "PRF1 WILD-TYPE" 
    TCGA-US-A77J 
"PRF1 WILD-TYPE" 
    TCGA-F2-6879     TCGA-F2-6880     TCGA-F2-7273     TCGA-F2-7276 
"PRF1 WILD-TYPE" "PRF1 WILD-TYPE" "PRF1 WILD-TYPE" "PRF1 WILD-TYPE" 
    TCGA-F2-A44G     TCGA-F2-A44H     TCGA-FB-A4P5     TCGA-FB-A4P6 
"PRF1 WILD-TYPE" "PRF1 WILD-TYPE" "PRF1 WILD-TYPE" "PRF1 WILD-TYPE" 
    TCGA-FB-A545     TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-FB-A7DR 
"PRF1 WILD-TYPE" "PRF1 WILD-TYPE" "PRF1 WILD-TYPE" "PRF1 WILD-TYPE" 
    TCGA-FZ-5920     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-H6-8124 
  "PRF1 MUTATED"   "PRF1 MUTATED" "PRF1 WILD-TYPE" "PRF1 WILD-TYPE" 
    TCGA-H6-A45N     TCGA-H8-A6C1     TCGA-HZ-7289     TCGA-HZ-7918 
"PRF1 WILD-TYPE" "PRF1 WILD-TYPE" "PRF1 WILD-TYPE" "PRF1 WILD-TYPE" 
    TCGA-HZ-7919     TCGA-HZ-7922     TCGA-HZ-7923     TCGA-HZ-7924 
"PRF1 WILD-TYPE" "PRF1 WILD-TYPE" "PRF1 WILD-TYPE" "PRF1 WILD-TYPE" 
    TCGA-HZ-7925     TCGA-HZ-7926     TCGA-HZ-8001     TCGA-HZ-8002 
"PRF1 WILD-TYPE" "PRF1 WILD-TYPE" "PRF1 WILD-TYPE"   "PRF1 MUTATED" 
    TCGA-HZ-8003     TCGA-HZ-8005     TCGA-HZ-8315     TCGA-HZ-8317 
"PRF1 WILD-TYPE" "PRF1 WILD-TYPE" "PRF1 WILD-TYPE" "PRF1 WILD-TYPE" 
    TCGA-HZ-8636     TCGA-HZ-8638     TCGA-HZ-A49G     TCGA-HZ-A49H 
"PRF1 WILD-TYPE" "PRF1 WILD-TYPE" "PRF1 WILD-TYPE" "PRF1 WILD-TYPE" 
    TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-IB-7644     TCGA-IB-7645 
"PRF1 WILD-TYPE" "PRF1 WILD-TYPE" "PRF1 WILD-TYPE" "PRF1 WILD-TYPE" 
    TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7651 
"PRF1 WILD-TYPE" "PRF1 WILD-TYPE" "PRF1 WILD-TYPE"   "PRF1 MUTATED" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887 
"PRF1 WILD-TYPE"   "PRF1 MUTATED" "PRF1 WILD-TYPE" "PRF1 WILD-TYPE" 
    TCGA-IB-7888     TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891 
"PRF1 WILD-TYPE" "PRF1 WILD-TYPE" "PRF1 WILD-TYPE" "PRF1 WILD-TYPE" 
    TCGA-IB-7893     TCGA-IB-7897     TCGA-IB-8126     TCGA-IB-8127 
"PRF1 WILD-TYPE"   "PRF1 MUTATED" "PRF1 WILD-TYPE" "PRF1 WILD-TYPE" 
    TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS 
"PRF1 WILD-TYPE" "PRF1 WILD-TYPE" "PRF1 WILD-TYPE" "PRF1 WILD-TYPE" 
    TCGA-IB-A5ST     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
"PRF1 WILD-TYPE" "PRF1 WILD-TYPE" "PRF1 WILD-TYPE" "PRF1 WILD-TYPE" 
    TCGA-PZ-A5RE     TCGA-Q3-A5QY     TCGA-US-A779     TCGA-US-A77E 
"PRF1 WILD-TYPE" "PRF1 WILD-TYPE" "PRF1 WILD-TYPE" "PRF1 WILD-TYPE" 
    TCGA-US-A77J 
"PRF1 WILD-TYPE" 
[1] "hr=" "1.4"
D419V2, continuous
                vv
clus             STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  PRF1 MUTATED          0        0         1         5         0        0
  PRF1 WILD-TYPE        1        4        10        46         2        3
D419V3, multiclass
                vv
clus             T1+T2 T3+T4
  PRF1 MUTATED       0     6
  PRF1 WILD-TYPE     6    60
D419V4, multiclass
       clus
vv      PRF1 MUTATED PRF1 WILD-TYPE
  T1+T2            0              6
  T3+T4            6             60
D419V5, binary
                cls
clus              0  1
  PRF1 MUTATED    1  5
  PRF1 WILD-TYPE 16 49
[1] "tbl2"
                cls
clus             [,1] [,2]
  PRF1 MUTATED      1    5
  PRF1 WILD-TYPE   16   49
   clus
vv  PRF1 MUTATED PRF1 WILD-TYPE
  0            1             16
  1            5             49
                vv
clus             M0 M1 MX
  PRF1 MUTATED    5  0  1
  PRF1 WILD-TYPE 34  3 29
D419V6, multiclass
    clus
vv   PRF1 MUTATED PRF1 WILD-TYPE
  M0            5             34
  M1            0              3
  MX            1             29
D419V7, binary
                cls
clus              0  1
  PRF1 MUTATED    3  3
  PRF1 WILD-TYPE 33 33
[1] "tbl2"
                cls
clus             [,1] [,2]
  PRF1 MUTATED      3    3
  PRF1 WILD-TYPE   33   33
        clus
vv       PRF1 MUTATED PRF1 WILD-TYPE
  FEMALE            3             33
  MALE              3             33
                vv
clus             PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  PRF1 MUTATED                                     6
  PRF1 WILD-TYPE                                  59
                vv
clus             PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  PRF1 MUTATED                                       0
  PRF1 WILD-TYPE                                     4
                vv
clus             PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  PRF1 MUTATED                                                  0
  PRF1 WILD-TYPE                                                2
D419V8, multiclass
                                                  clus
vv                                                 PRF1 MUTATED PRF1 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                         6             59
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                       0              4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA            0              2
D419V9, continuous
[1] "Remove cluster labels:" "PRF1 MUTATED"          
clus
  PRF1 MUTATED PRF1 WILD-TYPE 
             2             20 
    TCGA-F2-6880     TCGA-FB-A4P5     TCGA-FB-A4P6     TCGA-FB-A5VM 
"PRF1 WILD-TYPE" "PRF1 WILD-TYPE" "PRF1 WILD-TYPE" "PRF1 WILD-TYPE" 
    TCGA-FB-A78T     TCGA-FB-A7DR     TCGA-H6-8124     TCGA-H6-A45N 
"PRF1 WILD-TYPE" "PRF1 WILD-TYPE" "PRF1 WILD-TYPE" "PRF1 WILD-TYPE" 
    TCGA-H8-A6C1     TCGA-IB-7644     TCGA-IB-7649     TCGA-IB-7886 
"PRF1 WILD-TYPE" "PRF1 WILD-TYPE" "PRF1 WILD-TYPE" "PRF1 WILD-TYPE" 
    TCGA-IB-7887     TCGA-IB-7891     TCGA-IB-8126     TCGA-IB-8127 
"PRF1 WILD-TYPE" "PRF1 WILD-TYPE" "PRF1 WILD-TYPE" "PRF1 WILD-TYPE" 
    TCGA-IB-A5SS     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
"PRF1 WILD-TYPE" "PRF1 WILD-TYPE" "PRF1 WILD-TYPE" "PRF1 WILD-TYPE" 
D419V10, continuous
[1] "Remove cluster labels:" "PRF1 MUTATED"          
clus
  PRF1 MUTATED PRF1 WILD-TYPE 
             2             17 
    TCGA-FB-A4P5     TCGA-FB-A4P6     TCGA-FB-A5VM     TCGA-FB-A78T 
"PRF1 WILD-TYPE" "PRF1 WILD-TYPE" "PRF1 WILD-TYPE" "PRF1 WILD-TYPE" 
    TCGA-FB-A7DR     TCGA-H6-8124     TCGA-H8-A6C1     TCGA-IB-7644 
"PRF1 WILD-TYPE" "PRF1 WILD-TYPE" "PRF1 WILD-TYPE" "PRF1 WILD-TYPE" 
    TCGA-IB-7649     TCGA-IB-7886     TCGA-IB-7891     TCGA-IB-8126 
"PRF1 WILD-TYPE" "PRF1 WILD-TYPE" "PRF1 WILD-TYPE" "PRF1 WILD-TYPE" 
    TCGA-IB-8127     TCGA-IB-A5SS     TCGA-IB-A6UG     TCGA-LB-A7SX 
"PRF1 WILD-TYPE" "PRF1 WILD-TYPE" "PRF1 WILD-TYPE" "PRF1 WILD-TYPE" 
    TCGA-OE-A75W 
"PRF1 WILD-TYPE" 
                vv
clus             R0 R1 RX
  PRF1 MUTATED    6  0  0
  PRF1 WILD-TYPE 36 24  2
D419V11, multiclass
    clus
vv   PRF1 MUTATED PRF1 WILD-TYPE
  R0            6             36
  R1            0             24
  RX            0              2
D419V12, continuous

Clustering(420) Variable = KIAA0100 MUTATION ANALYSIS
D420V1, survival
                    sevent
clus2                 0  1
  KIAA0100 MUTATED    3  4
  KIAA0100 WILD-TYPE 37 25
  KIAA0100 MUTATED KIAA0100 WILD-TYPE 
                 7                 62 
  KIAA0100 MUTATED KIAA0100 WILD-TYPE 
                 4                 25 
$`KIAA0100 MUTATED`
TCGA-HZ-7926 TCGA-IB-7647 TCGA-IB-7651 TCGA-IB-7888 TCGA-IB-7890 TCGA-IB-8126 
        0.26        21.90        19.82        43.79        19.66         0.56 
TCGA-PZ-A5RE 
        8.12 

$`KIAA0100 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P5 TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR 
        0.13        11.93        12.66         2.47         0.03         5.46 
TCGA-FZ-5920 TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 
        2.01        36.20        20.81        12.89         7.66        13.02 
TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 
        7.89         0.92         0.66         0.13         0.26        12.13 
TCGA-HZ-7925 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 
       11.87         0.62         0.79         0.69         3.95         0.92 
TCGA-HZ-8317 TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH 
        0.53         0.16         2.99         0.76         0.95         6.38 
TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7649 TCGA-IB-7652 
        1.51        11.41        49.38         4.77        15.35        15.65 
TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7889 TCGA-IB-7891 TCGA-IB-7893 
       27.98         4.04         3.62        15.81        16.04         3.85 
TCGA-IB-7897 TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS 
       15.98        17.16        10.82         9.86         7.20        15.12 
TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W TCGA-Q3-A5QY TCGA-US-A779 
        0.26         1.35         4.18         3.62        13.68        16.80 
TCGA-US-A77E TCGA-US-A77J 
       14.14        18.67 

  KIAA0100 MUTATED KIAA0100 WILD-TYPE 
              0.26               0.03 
  KIAA0100 MUTATED KIAA0100 WILD-TYPE 
             43.79              49.38 
  KIAA0100 MUTATED KIAA0100 WILD-TYPE 
             19.66               7.15 
[1] "0.3 - 43.8 (19.7)" "0.0 - 49.4 (7.2)" 
        TCGA-F2-6879         TCGA-F2-6880         TCGA-F2-7273 
"KIAA0100 WILD-TYPE" "KIAA0100 WILD-TYPE" "KIAA0100 WILD-TYPE" 
        TCGA-F2-7276         TCGA-F2-A44G         TCGA-F2-A44H 
"KIAA0100 WILD-TYPE" "KIAA0100 WILD-TYPE" "KIAA0100 WILD-TYPE" 
        TCGA-FB-A4P5         TCGA-FB-A4P6         TCGA-FB-A545 
"KIAA0100 WILD-TYPE" "KIAA0100 WILD-TYPE" "KIAA0100 WILD-TYPE" 
        TCGA-FB-A5VM         TCGA-FB-A78T         TCGA-FB-A7DR 
"KIAA0100 WILD-TYPE" "KIAA0100 WILD-TYPE" "KIAA0100 WILD-TYPE" 
        TCGA-FZ-5920         TCGA-FZ-5922         TCGA-FZ-5923 
"KIAA0100 WILD-TYPE" "KIAA0100 WILD-TYPE" "KIAA0100 WILD-TYPE" 
        TCGA-H6-8124         TCGA-H6-A45N         TCGA-H8-A6C1 
"KIAA0100 WILD-TYPE" "KIAA0100 WILD-TYPE" "KIAA0100 WILD-TYPE" 
        TCGA-HZ-7289         TCGA-HZ-7918         TCGA-HZ-7919 
"KIAA0100 WILD-TYPE" "KIAA0100 WILD-TYPE" "KIAA0100 WILD-TYPE" 
        TCGA-HZ-7922         TCGA-HZ-7923         TCGA-HZ-7924 
"KIAA0100 WILD-TYPE" "KIAA0100 WILD-TYPE" "KIAA0100 WILD-TYPE" 
        TCGA-HZ-7925         TCGA-HZ-7926         TCGA-HZ-8001 
"KIAA0100 WILD-TYPE"   "KIAA0100 MUTATED" "KIAA0100 WILD-TYPE" 
        TCGA-HZ-8002         TCGA-HZ-8003         TCGA-HZ-8005 
"KIAA0100 WILD-TYPE" "KIAA0100 WILD-TYPE" "KIAA0100 WILD-TYPE" 
        TCGA-HZ-8315         TCGA-HZ-8317         TCGA-HZ-8636 
"KIAA0100 WILD-TYPE" "KIAA0100 WILD-TYPE" "KIAA0100 WILD-TYPE" 
        TCGA-HZ-8638         TCGA-HZ-A49G         TCGA-HZ-A49H 
"KIAA0100 WILD-TYPE" "KIAA0100 WILD-TYPE" "KIAA0100 WILD-TYPE" 
        TCGA-HZ-A4BH         TCGA-HZ-A4BK         TCGA-IB-7644 
"KIAA0100 WILD-TYPE" "KIAA0100 WILD-TYPE" "KIAA0100 WILD-TYPE" 
        TCGA-IB-7645         TCGA-IB-7646         TCGA-IB-7647 
"KIAA0100 WILD-TYPE" "KIAA0100 WILD-TYPE"   "KIAA0100 MUTATED" 
        TCGA-IB-7649         TCGA-IB-7651         TCGA-IB-7652 
"KIAA0100 WILD-TYPE"   "KIAA0100 MUTATED" "KIAA0100 WILD-TYPE" 
        TCGA-IB-7885         TCGA-IB-7886         TCGA-IB-7887 
"KIAA0100 WILD-TYPE" "KIAA0100 WILD-TYPE" "KIAA0100 WILD-TYPE" 
        TCGA-IB-7888         TCGA-IB-7889         TCGA-IB-7890 
  "KIAA0100 MUTATED" "KIAA0100 WILD-TYPE"   "KIAA0100 MUTATED" 
        TCGA-IB-7891         TCGA-IB-7893         TCGA-IB-7897 
"KIAA0100 WILD-TYPE" "KIAA0100 WILD-TYPE" "KIAA0100 WILD-TYPE" 
        TCGA-IB-8126         TCGA-IB-8127         TCGA-IB-A5SO 
  "KIAA0100 MUTATED" "KIAA0100 WILD-TYPE" "KIAA0100 WILD-TYPE" 
        TCGA-IB-A5SP         TCGA-IB-A5SQ         TCGA-IB-A5SS 
"KIAA0100 WILD-TYPE" "KIAA0100 WILD-TYPE" "KIAA0100 WILD-TYPE" 
        TCGA-IB-A5ST         TCGA-IB-A6UG         TCGA-LB-A7SX 
"KIAA0100 WILD-TYPE" "KIAA0100 WILD-TYPE" "KIAA0100 WILD-TYPE" 
        TCGA-OE-A75W         TCGA-PZ-A5RE         TCGA-Q3-A5QY 
"KIAA0100 WILD-TYPE"   "KIAA0100 MUTATED" "KIAA0100 WILD-TYPE" 
        TCGA-US-A779         TCGA-US-A77E         TCGA-US-A77J 
"KIAA0100 WILD-TYPE" "KIAA0100 WILD-TYPE" "KIAA0100 WILD-TYPE" 
        TCGA-F2-6879         TCGA-F2-6880         TCGA-F2-7273 
"KIAA0100 WILD-TYPE" "KIAA0100 WILD-TYPE" "KIAA0100 WILD-TYPE" 
        TCGA-F2-7276         TCGA-F2-A44G         TCGA-F2-A44H 
"KIAA0100 WILD-TYPE" "KIAA0100 WILD-TYPE" "KIAA0100 WILD-TYPE" 
        TCGA-FB-A4P5         TCGA-FB-A4P6         TCGA-FB-A545 
"KIAA0100 WILD-TYPE" "KIAA0100 WILD-TYPE" "KIAA0100 WILD-TYPE" 
        TCGA-FB-A5VM         TCGA-FB-A78T         TCGA-FB-A7DR 
"KIAA0100 WILD-TYPE" "KIAA0100 WILD-TYPE" "KIAA0100 WILD-TYPE" 
        TCGA-FZ-5920         TCGA-FZ-5922         TCGA-FZ-5923 
"KIAA0100 WILD-TYPE" "KIAA0100 WILD-TYPE" "KIAA0100 WILD-TYPE" 
        TCGA-H6-8124         TCGA-H6-A45N         TCGA-H8-A6C1 
"KIAA0100 WILD-TYPE" "KIAA0100 WILD-TYPE" "KIAA0100 WILD-TYPE" 
        TCGA-HZ-7289         TCGA-HZ-7918         TCGA-HZ-7919 
"KIAA0100 WILD-TYPE" "KIAA0100 WILD-TYPE" "KIAA0100 WILD-TYPE" 
        TCGA-HZ-7922         TCGA-HZ-7923         TCGA-HZ-7924 
"KIAA0100 WILD-TYPE" "KIAA0100 WILD-TYPE" "KIAA0100 WILD-TYPE" 
        TCGA-HZ-7925         TCGA-HZ-7926         TCGA-HZ-8001 
"KIAA0100 WILD-TYPE"   "KIAA0100 MUTATED" "KIAA0100 WILD-TYPE" 
        TCGA-HZ-8002         TCGA-HZ-8003         TCGA-HZ-8005 
"KIAA0100 WILD-TYPE" "KIAA0100 WILD-TYPE" "KIAA0100 WILD-TYPE" 
        TCGA-HZ-8315         TCGA-HZ-8317         TCGA-HZ-8636 
"KIAA0100 WILD-TYPE" "KIAA0100 WILD-TYPE" "KIAA0100 WILD-TYPE" 
        TCGA-HZ-8638         TCGA-HZ-A49G         TCGA-HZ-A49H 
"KIAA0100 WILD-TYPE" "KIAA0100 WILD-TYPE" "KIAA0100 WILD-TYPE" 
        TCGA-HZ-A4BH         TCGA-HZ-A4BK         TCGA-IB-7644 
"KIAA0100 WILD-TYPE" "KIAA0100 WILD-TYPE" "KIAA0100 WILD-TYPE" 
        TCGA-IB-7645         TCGA-IB-7646         TCGA-IB-7647 
"KIAA0100 WILD-TYPE" "KIAA0100 WILD-TYPE"   "KIAA0100 MUTATED" 
        TCGA-IB-7649         TCGA-IB-7651         TCGA-IB-7652 
"KIAA0100 WILD-TYPE"   "KIAA0100 MUTATED" "KIAA0100 WILD-TYPE" 
        TCGA-IB-7885         TCGA-IB-7886         TCGA-IB-7887 
"KIAA0100 WILD-TYPE" "KIAA0100 WILD-TYPE" "KIAA0100 WILD-TYPE" 
        TCGA-IB-7888         TCGA-IB-7889         TCGA-IB-7890 
  "KIAA0100 MUTATED" "KIAA0100 WILD-TYPE"   "KIAA0100 MUTATED" 
        TCGA-IB-7891         TCGA-IB-7893         TCGA-IB-7897 
"KIAA0100 WILD-TYPE" "KIAA0100 WILD-TYPE" "KIAA0100 WILD-TYPE" 
        TCGA-IB-8126         TCGA-IB-8127         TCGA-IB-A5SO 
  "KIAA0100 MUTATED" "KIAA0100 WILD-TYPE" "KIAA0100 WILD-TYPE" 
        TCGA-IB-A5SP         TCGA-IB-A5SQ         TCGA-IB-A5SS 
"KIAA0100 WILD-TYPE" "KIAA0100 WILD-TYPE" "KIAA0100 WILD-TYPE" 
        TCGA-IB-A5ST         TCGA-IB-A6UG         TCGA-LB-A7SX 
"KIAA0100 WILD-TYPE" "KIAA0100 WILD-TYPE" "KIAA0100 WILD-TYPE" 
        TCGA-OE-A75W         TCGA-PZ-A5RE         TCGA-Q3-A5QY 
"KIAA0100 WILD-TYPE"   "KIAA0100 MUTATED" "KIAA0100 WILD-TYPE" 
        TCGA-US-A779         TCGA-US-A77E         TCGA-US-A77J 
"KIAA0100 WILD-TYPE" "KIAA0100 WILD-TYPE" "KIAA0100 WILD-TYPE" 
        TCGA-F2-6879         TCGA-F2-6880         TCGA-F2-7273 
"KIAA0100 WILD-TYPE" "KIAA0100 WILD-TYPE" "KIAA0100 WILD-TYPE" 
        TCGA-F2-7276         TCGA-F2-A44G         TCGA-F2-A44H 
"KIAA0100 WILD-TYPE" "KIAA0100 WILD-TYPE" "KIAA0100 WILD-TYPE" 
        TCGA-FB-A4P5         TCGA-FB-A4P6         TCGA-FB-A545 
"KIAA0100 WILD-TYPE" "KIAA0100 WILD-TYPE" "KIAA0100 WILD-TYPE" 
        TCGA-FB-A5VM         TCGA-FB-A78T         TCGA-FB-A7DR 
"KIAA0100 WILD-TYPE" "KIAA0100 WILD-TYPE" "KIAA0100 WILD-TYPE" 
        TCGA-FZ-5920         TCGA-FZ-5922         TCGA-FZ-5923 
"KIAA0100 WILD-TYPE" "KIAA0100 WILD-TYPE" "KIAA0100 WILD-TYPE" 
        TCGA-H6-8124         TCGA-H6-A45N         TCGA-H8-A6C1 
"KIAA0100 WILD-TYPE" "KIAA0100 WILD-TYPE" "KIAA0100 WILD-TYPE" 
        TCGA-HZ-7289         TCGA-HZ-7918         TCGA-HZ-7919 
"KIAA0100 WILD-TYPE" "KIAA0100 WILD-TYPE" "KIAA0100 WILD-TYPE" 
        TCGA-HZ-7922         TCGA-HZ-7923         TCGA-HZ-7924 
"KIAA0100 WILD-TYPE" "KIAA0100 WILD-TYPE" "KIAA0100 WILD-TYPE" 
        TCGA-HZ-7925         TCGA-HZ-7926         TCGA-HZ-8001 
"KIAA0100 WILD-TYPE"   "KIAA0100 MUTATED" "KIAA0100 WILD-TYPE" 
        TCGA-HZ-8002         TCGA-HZ-8003         TCGA-HZ-8005 
"KIAA0100 WILD-TYPE" "KIAA0100 WILD-TYPE" "KIAA0100 WILD-TYPE" 
        TCGA-HZ-8315         TCGA-HZ-8317         TCGA-HZ-8636 
"KIAA0100 WILD-TYPE" "KIAA0100 WILD-TYPE" "KIAA0100 WILD-TYPE" 
        TCGA-HZ-8638         TCGA-HZ-A49G         TCGA-HZ-A49H 
"KIAA0100 WILD-TYPE" "KIAA0100 WILD-TYPE" "KIAA0100 WILD-TYPE" 
        TCGA-HZ-A4BH         TCGA-HZ-A4BK         TCGA-IB-7644 
"KIAA0100 WILD-TYPE" "KIAA0100 WILD-TYPE" "KIAA0100 WILD-TYPE" 
        TCGA-IB-7645         TCGA-IB-7646         TCGA-IB-7647 
"KIAA0100 WILD-TYPE" "KIAA0100 WILD-TYPE"   "KIAA0100 MUTATED" 
        TCGA-IB-7649         TCGA-IB-7651         TCGA-IB-7652 
"KIAA0100 WILD-TYPE"   "KIAA0100 MUTATED" "KIAA0100 WILD-TYPE" 
        TCGA-IB-7885         TCGA-IB-7886         TCGA-IB-7887 
"KIAA0100 WILD-TYPE" "KIAA0100 WILD-TYPE" "KIAA0100 WILD-TYPE" 
        TCGA-IB-7888         TCGA-IB-7889         TCGA-IB-7890 
  "KIAA0100 MUTATED" "KIAA0100 WILD-TYPE"   "KIAA0100 MUTATED" 
        TCGA-IB-7891         TCGA-IB-7893         TCGA-IB-7897 
"KIAA0100 WILD-TYPE" "KIAA0100 WILD-TYPE" "KIAA0100 WILD-TYPE" 
        TCGA-IB-8126         TCGA-IB-8127         TCGA-IB-A5SO 
  "KIAA0100 MUTATED" "KIAA0100 WILD-TYPE" "KIAA0100 WILD-TYPE" 
        TCGA-IB-A5SP         TCGA-IB-A5SQ         TCGA-IB-A5SS 
"KIAA0100 WILD-TYPE" "KIAA0100 WILD-TYPE" "KIAA0100 WILD-TYPE" 
        TCGA-IB-A5ST         TCGA-IB-A6UG         TCGA-LB-A7SX 
"KIAA0100 WILD-TYPE" "KIAA0100 WILD-TYPE" "KIAA0100 WILD-TYPE" 
        TCGA-OE-A75W         TCGA-PZ-A5RE         TCGA-Q3-A5QY 
"KIAA0100 WILD-TYPE"   "KIAA0100 MUTATED" "KIAA0100 WILD-TYPE" 
        TCGA-US-A779         TCGA-US-A77E         TCGA-US-A77J 
"KIAA0100 WILD-TYPE" "KIAA0100 WILD-TYPE" "KIAA0100 WILD-TYPE" 
[1] "hr=" "1.8"
D420V2, continuous
                    vv
clus                 STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  KIAA0100 MUTATED          0        1         1         4         1        0
  KIAA0100 WILD-TYPE        1        3        10        47         1        3
D420V3, multiclass
                    vv
clus                 T1+T2 T3+T4
  KIAA0100 MUTATED       1     6
  KIAA0100 WILD-TYPE     5    60
D420V4, multiclass
       clus
vv      KIAA0100 MUTATED KIAA0100 WILD-TYPE
  T1+T2                1                  5
  T3+T4                6                 60
D420V5, binary
                    cls
clus                  0  1
  KIAA0100 MUTATED    2  5
  KIAA0100 WILD-TYPE 15 49
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  KIAA0100 MUTATED      2    5
  KIAA0100 WILD-TYPE   15   49
   clus
vv  KIAA0100 MUTATED KIAA0100 WILD-TYPE
  0                2                 15
  1                5                 49
                    vv
clus                 M0 M1 MX
  KIAA0100 MUTATED    5  0  2
  KIAA0100 WILD-TYPE 34  3 28
D420V6, multiclass
    clus
vv   KIAA0100 MUTATED KIAA0100 WILD-TYPE
  M0                5                 34
  M1                0                  3
  MX                2                 28
D420V7, binary
                    cls
clus                  0  1
  KIAA0100 MUTATED    5  2
  KIAA0100 WILD-TYPE 31 34
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  KIAA0100 MUTATED      5    2
  KIAA0100 WILD-TYPE   31   34
        clus
vv       KIAA0100 MUTATED KIAA0100 WILD-TYPE
  FEMALE                5                 31
  MALE                  2                 34
                    vv
clus                 PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  KIAA0100 MUTATED                                     7
  KIAA0100 WILD-TYPE                                  58
                    vv
clus                 PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  KIAA0100 MUTATED                                       0
  KIAA0100 WILD-TYPE                                     4
                    vv
clus                 PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  KIAA0100 MUTATED                                                  0
  KIAA0100 WILD-TYPE                                                2
D420V8, multiclass
                                                  clus
vv                                                 KIAA0100 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                             7
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                           0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                0
                                                  clus
vv                                                 KIAA0100 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                              58
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                             4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                  2
D420V9, continuous
[1] "Remove cluster labels:" "KIAA0100 MUTATED"      
clus
  KIAA0100 MUTATED KIAA0100 WILD-TYPE 
                 2                 20 
        TCGA-F2-6880         TCGA-FB-A4P5         TCGA-FB-A4P6 
"KIAA0100 WILD-TYPE" "KIAA0100 WILD-TYPE" "KIAA0100 WILD-TYPE" 
        TCGA-FB-A5VM         TCGA-FB-A78T         TCGA-FB-A7DR 
"KIAA0100 WILD-TYPE" "KIAA0100 WILD-TYPE" "KIAA0100 WILD-TYPE" 
        TCGA-H6-8124         TCGA-H6-A45N         TCGA-H8-A6C1 
"KIAA0100 WILD-TYPE" "KIAA0100 WILD-TYPE" "KIAA0100 WILD-TYPE" 
        TCGA-IB-7644         TCGA-IB-7649         TCGA-IB-7885 
"KIAA0100 WILD-TYPE" "KIAA0100 WILD-TYPE" "KIAA0100 WILD-TYPE" 
        TCGA-IB-7886         TCGA-IB-7887         TCGA-IB-7891 
"KIAA0100 WILD-TYPE" "KIAA0100 WILD-TYPE" "KIAA0100 WILD-TYPE" 
        TCGA-IB-8127         TCGA-IB-A5SS         TCGA-IB-A6UG 
"KIAA0100 WILD-TYPE" "KIAA0100 WILD-TYPE" "KIAA0100 WILD-TYPE" 
        TCGA-LB-A7SX         TCGA-OE-A75W 
"KIAA0100 WILD-TYPE" "KIAA0100 WILD-TYPE" 
D420V10, continuous
[1] "Remove cluster labels:" "KIAA0100 MUTATED"      
clus
  KIAA0100 MUTATED KIAA0100 WILD-TYPE 
                 2                 17 
        TCGA-FB-A4P5         TCGA-FB-A4P6         TCGA-FB-A5VM 
"KIAA0100 WILD-TYPE" "KIAA0100 WILD-TYPE" "KIAA0100 WILD-TYPE" 
        TCGA-FB-A78T         TCGA-FB-A7DR         TCGA-H6-8124 
"KIAA0100 WILD-TYPE" "KIAA0100 WILD-TYPE" "KIAA0100 WILD-TYPE" 
        TCGA-H8-A6C1         TCGA-IB-7644         TCGA-IB-7649 
"KIAA0100 WILD-TYPE" "KIAA0100 WILD-TYPE" "KIAA0100 WILD-TYPE" 
        TCGA-IB-7885         TCGA-IB-7886         TCGA-IB-7891 
"KIAA0100 WILD-TYPE" "KIAA0100 WILD-TYPE" "KIAA0100 WILD-TYPE" 
        TCGA-IB-8127         TCGA-IB-A5SS         TCGA-IB-A6UG 
"KIAA0100 WILD-TYPE" "KIAA0100 WILD-TYPE" "KIAA0100 WILD-TYPE" 
        TCGA-LB-A7SX         TCGA-OE-A75W 
"KIAA0100 WILD-TYPE" "KIAA0100 WILD-TYPE" 
                    vv
clus                 R0 R1 RX
  KIAA0100 MUTATED    3  2  1
  KIAA0100 WILD-TYPE 39 22  1
D420V11, multiclass
    clus
vv   KIAA0100 MUTATED KIAA0100 WILD-TYPE
  R0                3                 39
  R1                2                 22
  RX                1                  1
D420V12, continuous

Clustering(421) Variable = MYO9B MUTATION ANALYSIS
D421V1, survival
                 sevent
clus2              0  1
  MYO9B MUTATED    6  2
  MYO9B WILD-TYPE 34 27
  MYO9B MUTATED MYO9B WILD-TYPE 
              8              61 
  MYO9B MUTATED MYO9B WILD-TYPE 
              2              27 
$`MYO9B MUTATED`
TCGA-H6-8124 TCGA-HZ-7918 TCGA-HZ-7919 TCGA-IB-7651 TCGA-IB-7888 TCGA-IB-8126 
       12.89         0.92         0.66        19.82        43.79         0.56 
TCGA-IB-8127 TCGA-LB-A7SX 
       17.16         4.18 

$`MYO9B WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P5 TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR 
        0.13        11.93        12.66         2.47         0.03         5.46 
TCGA-FZ-5920 TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7289 
        2.01        36.20        20.81         7.66        13.02         7.89 
TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8001 
        0.13         0.26        12.13        11.87         0.26         0.62 
TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8636 
        0.79         0.69         3.95         0.92         0.53         0.16 
TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 
        2.99         0.76         0.95         6.38         1.51        11.41 
TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7652 TCGA-IB-7885 
       49.38         4.77        21.90        15.35        15.65        27.98 
TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-7893 
        4.04         3.62        15.81        19.66        16.04         3.85 
TCGA-IB-7897 TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST 
       15.98        10.82         9.86         7.20        15.12         0.26 
TCGA-IB-A6UG TCGA-OE-A75W TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E 
        1.35         3.62         8.12        13.68        16.80        14.14 
TCGA-US-A77J 
       18.67 

  MYO9B MUTATED MYO9B WILD-TYPE 
           0.56            0.03 
  MYO9B MUTATED MYO9B WILD-TYPE 
          43.79           49.38 
  MYO9B MUTATED MYO9B WILD-TYPE 
          8.535           7.660 
[1] "0.6 - 43.8 (8.5)" "0.0 - 49.4 (7.7)"
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"MYO9B WILD-TYPE" "MYO9B WILD-TYPE" "MYO9B WILD-TYPE" "MYO9B WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"MYO9B WILD-TYPE" "MYO9B WILD-TYPE" "MYO9B WILD-TYPE" "MYO9B WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"MYO9B WILD-TYPE" "MYO9B WILD-TYPE" "MYO9B WILD-TYPE" "MYO9B WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"MYO9B WILD-TYPE" "MYO9B WILD-TYPE" "MYO9B WILD-TYPE"   "MYO9B MUTATED" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"MYO9B WILD-TYPE" "MYO9B WILD-TYPE" "MYO9B WILD-TYPE"   "MYO9B MUTATED" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
  "MYO9B MUTATED" "MYO9B WILD-TYPE" "MYO9B WILD-TYPE" "MYO9B WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"MYO9B WILD-TYPE" "MYO9B WILD-TYPE" "MYO9B WILD-TYPE" "MYO9B WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"MYO9B WILD-TYPE" "MYO9B WILD-TYPE" "MYO9B WILD-TYPE" "MYO9B WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"MYO9B WILD-TYPE" "MYO9B WILD-TYPE" "MYO9B WILD-TYPE" "MYO9B WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"MYO9B WILD-TYPE" "MYO9B WILD-TYPE" "MYO9B WILD-TYPE" "MYO9B WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"MYO9B WILD-TYPE" "MYO9B WILD-TYPE" "MYO9B WILD-TYPE"   "MYO9B MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"MYO9B WILD-TYPE" "MYO9B WILD-TYPE" "MYO9B WILD-TYPE" "MYO9B WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
  "MYO9B MUTATED" "MYO9B WILD-TYPE" "MYO9B WILD-TYPE" "MYO9B WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"MYO9B WILD-TYPE" "MYO9B WILD-TYPE"   "MYO9B MUTATED"   "MYO9B MUTATED" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"MYO9B WILD-TYPE" "MYO9B WILD-TYPE" "MYO9B WILD-TYPE" "MYO9B WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"MYO9B WILD-TYPE" "MYO9B WILD-TYPE"   "MYO9B MUTATED" "MYO9B WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"MYO9B WILD-TYPE" "MYO9B WILD-TYPE" "MYO9B WILD-TYPE" "MYO9B WILD-TYPE" 
     TCGA-US-A77J 
"MYO9B WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"MYO9B WILD-TYPE" "MYO9B WILD-TYPE" "MYO9B WILD-TYPE" "MYO9B WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"MYO9B WILD-TYPE" "MYO9B WILD-TYPE" "MYO9B WILD-TYPE" "MYO9B WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"MYO9B WILD-TYPE" "MYO9B WILD-TYPE" "MYO9B WILD-TYPE" "MYO9B WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"MYO9B WILD-TYPE" "MYO9B WILD-TYPE" "MYO9B WILD-TYPE"   "MYO9B MUTATED" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"MYO9B WILD-TYPE" "MYO9B WILD-TYPE" "MYO9B WILD-TYPE"   "MYO9B MUTATED" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
  "MYO9B MUTATED" "MYO9B WILD-TYPE" "MYO9B WILD-TYPE" "MYO9B WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"MYO9B WILD-TYPE" "MYO9B WILD-TYPE" "MYO9B WILD-TYPE" "MYO9B WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"MYO9B WILD-TYPE" "MYO9B WILD-TYPE" "MYO9B WILD-TYPE" "MYO9B WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"MYO9B WILD-TYPE" "MYO9B WILD-TYPE" "MYO9B WILD-TYPE" "MYO9B WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"MYO9B WILD-TYPE" "MYO9B WILD-TYPE" "MYO9B WILD-TYPE" "MYO9B WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"MYO9B WILD-TYPE" "MYO9B WILD-TYPE" "MYO9B WILD-TYPE"   "MYO9B MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"MYO9B WILD-TYPE" "MYO9B WILD-TYPE" "MYO9B WILD-TYPE" "MYO9B WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
  "MYO9B MUTATED" "MYO9B WILD-TYPE" "MYO9B WILD-TYPE" "MYO9B WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"MYO9B WILD-TYPE" "MYO9B WILD-TYPE"   "MYO9B MUTATED"   "MYO9B MUTATED" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"MYO9B WILD-TYPE" "MYO9B WILD-TYPE" "MYO9B WILD-TYPE" "MYO9B WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"MYO9B WILD-TYPE" "MYO9B WILD-TYPE"   "MYO9B MUTATED" "MYO9B WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"MYO9B WILD-TYPE" "MYO9B WILD-TYPE" "MYO9B WILD-TYPE" "MYO9B WILD-TYPE" 
     TCGA-US-A77J 
"MYO9B WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"MYO9B WILD-TYPE" "MYO9B WILD-TYPE" "MYO9B WILD-TYPE" "MYO9B WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"MYO9B WILD-TYPE" "MYO9B WILD-TYPE" "MYO9B WILD-TYPE" "MYO9B WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"MYO9B WILD-TYPE" "MYO9B WILD-TYPE" "MYO9B WILD-TYPE" "MYO9B WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"MYO9B WILD-TYPE" "MYO9B WILD-TYPE" "MYO9B WILD-TYPE"   "MYO9B MUTATED" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"MYO9B WILD-TYPE" "MYO9B WILD-TYPE" "MYO9B WILD-TYPE"   "MYO9B MUTATED" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
  "MYO9B MUTATED" "MYO9B WILD-TYPE" "MYO9B WILD-TYPE" "MYO9B WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"MYO9B WILD-TYPE" "MYO9B WILD-TYPE" "MYO9B WILD-TYPE" "MYO9B WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"MYO9B WILD-TYPE" "MYO9B WILD-TYPE" "MYO9B WILD-TYPE" "MYO9B WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"MYO9B WILD-TYPE" "MYO9B WILD-TYPE" "MYO9B WILD-TYPE" "MYO9B WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"MYO9B WILD-TYPE" "MYO9B WILD-TYPE" "MYO9B WILD-TYPE" "MYO9B WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"MYO9B WILD-TYPE" "MYO9B WILD-TYPE" "MYO9B WILD-TYPE"   "MYO9B MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"MYO9B WILD-TYPE" "MYO9B WILD-TYPE" "MYO9B WILD-TYPE" "MYO9B WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
  "MYO9B MUTATED" "MYO9B WILD-TYPE" "MYO9B WILD-TYPE" "MYO9B WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"MYO9B WILD-TYPE" "MYO9B WILD-TYPE"   "MYO9B MUTATED"   "MYO9B MUTATED" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"MYO9B WILD-TYPE" "MYO9B WILD-TYPE" "MYO9B WILD-TYPE" "MYO9B WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"MYO9B WILD-TYPE" "MYO9B WILD-TYPE"   "MYO9B MUTATED" "MYO9B WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"MYO9B WILD-TYPE" "MYO9B WILD-TYPE" "MYO9B WILD-TYPE" "MYO9B WILD-TYPE" 
     TCGA-US-A77J 
"MYO9B WILD-TYPE" 
[1] "hr=" "2.8"
D421V2, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  MYO9B MUTATED          0        0         1         6         1        0
  MYO9B WILD-TYPE        1        4        10        45         1        3
D421V3, multiclass
                 vv
clus              T1+T2 T3+T4
  MYO9B MUTATED       0     8
  MYO9B WILD-TYPE     6    58
D421V4, multiclass
       clus
vv      MYO9B MUTATED MYO9B WILD-TYPE
  T1+T2             0               6
  T3+T4             8              58
D421V5, binary
                 cls
clus               0  1
  MYO9B MUTATED    1  7
  MYO9B WILD-TYPE 16 47
[1] "tbl2"
                 cls
clus              [,1] [,2]
  MYO9B MUTATED      1    7
  MYO9B WILD-TYPE   16   47
   clus
vv  MYO9B MUTATED MYO9B WILD-TYPE
  0             1              16
  1             7              47
                 vv
clus              M0 M1 MX
  MYO9B MUTATED    7  0  1
  MYO9B WILD-TYPE 32  3 29
D421V6, multiclass
    clus
vv   MYO9B MUTATED MYO9B WILD-TYPE
  M0             7              32
  M1             0               3
  MX             1              29
D421V7, binary
                 cls
clus               0  1
  MYO9B MUTATED    6  2
  MYO9B WILD-TYPE 30 34
[1] "tbl2"
                 cls
clus              [,1] [,2]
  MYO9B MUTATED      6    2
  MYO9B WILD-TYPE   30   34
        clus
vv       MYO9B MUTATED MYO9B WILD-TYPE
  FEMALE             6              30
  MALE               2              34
                 vv
clus              PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  MYO9B MUTATED                                     8
  MYO9B WILD-TYPE                                  57
                 vv
clus              PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  MYO9B MUTATED                                       0
  MYO9B WILD-TYPE                                     4
                 vv
clus              PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  MYO9B MUTATED                                                  0
  MYO9B WILD-TYPE                                                2
D421V8, multiclass
                                                  clus
vv                                                 MYO9B MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                          8
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                        0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA             0
                                                  clus
vv                                                 MYO9B WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                           57
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                          4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA               2
D421V9, continuous
D421V10, continuous
                 vv
clus              R0 R1 RX
  MYO9B MUTATED    4  4  0
  MYO9B WILD-TYPE 38 20  2
D421V11, multiclass
    clus
vv   MYO9B MUTATED MYO9B WILD-TYPE
  R0             4              38
  R1             4              20
  RX             0               2
D421V12, continuous

Clustering(422) Variable = GABRD MUTATION ANALYSIS
D422V1, survival
                 sevent
clus2              0  1
  GABRD MUTATED    3  2
  GABRD WILD-TYPE 37 27
  GABRD MUTATED GABRD WILD-TYPE 
              5              64 
  GABRD MUTATED GABRD WILD-TYPE 
              2              27 
$`GABRD MUTATED`
TCGA-FB-A4P6 TCGA-HZ-8315 TCGA-HZ-8317 TCGA-IB-7651 TCGA-US-A77E 
       11.93         0.92         0.53        19.82        14.14 

$`GABRD WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P5 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR TCGA-FZ-5920 
        0.13        12.66         2.47         0.03         5.46         2.01 
TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7289 
       36.20        20.81        12.89         7.66        13.02         7.89 
TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 
        0.92         0.66         0.13         0.26        12.13        11.87 
TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8636 
        0.26         0.62         0.79         0.69         3.95         0.16 
TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 
        2.99         0.76         0.95         6.38         1.51        11.41 
TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7652 TCGA-IB-7885 
       49.38         4.77        21.90        15.35        15.65        27.98 
TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 
        4.04         3.62        43.79        15.81        19.66        16.04 
TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP 
        3.85        15.98         0.56        17.16        10.82         9.86 
TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W 
        7.20        15.12         0.26         1.35         4.18         3.62 
TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77J 
        8.12        13.68        16.80        18.67 

  GABRD MUTATED GABRD WILD-TYPE 
           0.53            0.03 
  GABRD MUTATED GABRD WILD-TYPE 
          19.82           49.38 
  GABRD MUTATED GABRD WILD-TYPE 
          11.93            7.43 
[1] "0.5 - 19.8 (11.9)" "0.0 - 49.4 (7.4)" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"GABRD WILD-TYPE" "GABRD WILD-TYPE" "GABRD WILD-TYPE" "GABRD WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"GABRD WILD-TYPE" "GABRD WILD-TYPE" "GABRD WILD-TYPE"   "GABRD MUTATED" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"GABRD WILD-TYPE" "GABRD WILD-TYPE" "GABRD WILD-TYPE" "GABRD WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"GABRD WILD-TYPE" "GABRD WILD-TYPE" "GABRD WILD-TYPE" "GABRD WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"GABRD WILD-TYPE" "GABRD WILD-TYPE" "GABRD WILD-TYPE" "GABRD WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"GABRD WILD-TYPE" "GABRD WILD-TYPE" "GABRD WILD-TYPE" "GABRD WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"GABRD WILD-TYPE" "GABRD WILD-TYPE" "GABRD WILD-TYPE" "GABRD WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"GABRD WILD-TYPE" "GABRD WILD-TYPE"   "GABRD MUTATED"   "GABRD MUTATED" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"GABRD WILD-TYPE" "GABRD WILD-TYPE" "GABRD WILD-TYPE" "GABRD WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"GABRD WILD-TYPE" "GABRD WILD-TYPE" "GABRD WILD-TYPE" "GABRD WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"GABRD WILD-TYPE" "GABRD WILD-TYPE" "GABRD WILD-TYPE"   "GABRD MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"GABRD WILD-TYPE" "GABRD WILD-TYPE" "GABRD WILD-TYPE" "GABRD WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"GABRD WILD-TYPE" "GABRD WILD-TYPE" "GABRD WILD-TYPE" "GABRD WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"GABRD WILD-TYPE" "GABRD WILD-TYPE" "GABRD WILD-TYPE" "GABRD WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"GABRD WILD-TYPE" "GABRD WILD-TYPE" "GABRD WILD-TYPE" "GABRD WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"GABRD WILD-TYPE" "GABRD WILD-TYPE" "GABRD WILD-TYPE" "GABRD WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"GABRD WILD-TYPE" "GABRD WILD-TYPE" "GABRD WILD-TYPE"   "GABRD MUTATED" 
     TCGA-US-A77J 
"GABRD WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"GABRD WILD-TYPE" "GABRD WILD-TYPE" "GABRD WILD-TYPE" "GABRD WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"GABRD WILD-TYPE" "GABRD WILD-TYPE" "GABRD WILD-TYPE"   "GABRD MUTATED" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"GABRD WILD-TYPE" "GABRD WILD-TYPE" "GABRD WILD-TYPE" "GABRD WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"GABRD WILD-TYPE" "GABRD WILD-TYPE" "GABRD WILD-TYPE" "GABRD WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"GABRD WILD-TYPE" "GABRD WILD-TYPE" "GABRD WILD-TYPE" "GABRD WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"GABRD WILD-TYPE" "GABRD WILD-TYPE" "GABRD WILD-TYPE" "GABRD WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"GABRD WILD-TYPE" "GABRD WILD-TYPE" "GABRD WILD-TYPE" "GABRD WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"GABRD WILD-TYPE" "GABRD WILD-TYPE"   "GABRD MUTATED"   "GABRD MUTATED" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"GABRD WILD-TYPE" "GABRD WILD-TYPE" "GABRD WILD-TYPE" "GABRD WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"GABRD WILD-TYPE" "GABRD WILD-TYPE" "GABRD WILD-TYPE" "GABRD WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"GABRD WILD-TYPE" "GABRD WILD-TYPE" "GABRD WILD-TYPE"   "GABRD MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"GABRD WILD-TYPE" "GABRD WILD-TYPE" "GABRD WILD-TYPE" "GABRD WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"GABRD WILD-TYPE" "GABRD WILD-TYPE" "GABRD WILD-TYPE" "GABRD WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"GABRD WILD-TYPE" "GABRD WILD-TYPE" "GABRD WILD-TYPE" "GABRD WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"GABRD WILD-TYPE" "GABRD WILD-TYPE" "GABRD WILD-TYPE" "GABRD WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"GABRD WILD-TYPE" "GABRD WILD-TYPE" "GABRD WILD-TYPE" "GABRD WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"GABRD WILD-TYPE" "GABRD WILD-TYPE" "GABRD WILD-TYPE"   "GABRD MUTATED" 
     TCGA-US-A77J 
"GABRD WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"GABRD WILD-TYPE" "GABRD WILD-TYPE" "GABRD WILD-TYPE" "GABRD WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"GABRD WILD-TYPE" "GABRD WILD-TYPE" "GABRD WILD-TYPE"   "GABRD MUTATED" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"GABRD WILD-TYPE" "GABRD WILD-TYPE" "GABRD WILD-TYPE" "GABRD WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"GABRD WILD-TYPE" "GABRD WILD-TYPE" "GABRD WILD-TYPE" "GABRD WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"GABRD WILD-TYPE" "GABRD WILD-TYPE" "GABRD WILD-TYPE" "GABRD WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"GABRD WILD-TYPE" "GABRD WILD-TYPE" "GABRD WILD-TYPE" "GABRD WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"GABRD WILD-TYPE" "GABRD WILD-TYPE" "GABRD WILD-TYPE" "GABRD WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"GABRD WILD-TYPE" "GABRD WILD-TYPE"   "GABRD MUTATED"   "GABRD MUTATED" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"GABRD WILD-TYPE" "GABRD WILD-TYPE" "GABRD WILD-TYPE" "GABRD WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"GABRD WILD-TYPE" "GABRD WILD-TYPE" "GABRD WILD-TYPE" "GABRD WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"GABRD WILD-TYPE" "GABRD WILD-TYPE" "GABRD WILD-TYPE"   "GABRD MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"GABRD WILD-TYPE" "GABRD WILD-TYPE" "GABRD WILD-TYPE" "GABRD WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"GABRD WILD-TYPE" "GABRD WILD-TYPE" "GABRD WILD-TYPE" "GABRD WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"GABRD WILD-TYPE" "GABRD WILD-TYPE" "GABRD WILD-TYPE" "GABRD WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"GABRD WILD-TYPE" "GABRD WILD-TYPE" "GABRD WILD-TYPE" "GABRD WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"GABRD WILD-TYPE" "GABRD WILD-TYPE" "GABRD WILD-TYPE" "GABRD WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"GABRD WILD-TYPE" "GABRD WILD-TYPE" "GABRD WILD-TYPE"   "GABRD MUTATED" 
     TCGA-US-A77J 
"GABRD WILD-TYPE" 
[1] "hr=" "1"  
D422V2, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  GABRD MUTATED          0        0         1         4         0        0
  GABRD WILD-TYPE        1        4        10        47         2        3
D422V3, multiclass
                 vv
clus              T1+T2 T3+T4
  GABRD MUTATED       0     5
  GABRD WILD-TYPE     6    61
D422V4, multiclass
       clus
vv      GABRD MUTATED GABRD WILD-TYPE
  T1+T2             0               6
  T3+T4             5              61
D422V5, binary
                 cls
clus               0  1
  GABRD MUTATED    1  4
  GABRD WILD-TYPE 16 50
[1] "tbl2"
                 cls
clus              [,1] [,2]
  GABRD MUTATED      1    4
  GABRD WILD-TYPE   16   50
   clus
vv  GABRD MUTATED GABRD WILD-TYPE
  0             1              16
  1             4              50
                 vv
clus              M0 M1 MX
  GABRD MUTATED    1  0  4
  GABRD WILD-TYPE 38  3 26
D422V6, multiclass
    clus
vv   GABRD MUTATED GABRD WILD-TYPE
  M0             1              38
  M1             0               3
  MX             4              26
D422V7, binary
                 cls
clus               0  1
  GABRD MUTATED    3  2
  GABRD WILD-TYPE 33 34
[1] "tbl2"
                 cls
clus              [,1] [,2]
  GABRD MUTATED      3    2
  GABRD WILD-TYPE   33   34
        clus
vv       GABRD MUTATED GABRD WILD-TYPE
  FEMALE             3              33
  MALE               2              34
                 vv
clus              PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  GABRD MUTATED                                     5
  GABRD WILD-TYPE                                  60
                 vv
clus              PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  GABRD MUTATED                                       0
  GABRD WILD-TYPE                                     4
                 vv
clus              PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  GABRD MUTATED                                                  0
  GABRD WILD-TYPE                                                2
D422V8, multiclass
                                                  clus
vv                                                 GABRD MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                          5
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                        0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA             0
                                                  clus
vv                                                 GABRD WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                           60
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                          4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA               2
D422V9, continuous
[1] "Remove cluster labels:" "GABRD MUTATED"         
clus
  GABRD MUTATED GABRD WILD-TYPE 
              2              20 
     TCGA-F2-6880      TCGA-FB-A4P5      TCGA-FB-A5VM      TCGA-FB-A78T 
"GABRD WILD-TYPE" "GABRD WILD-TYPE" "GABRD WILD-TYPE" "GABRD WILD-TYPE" 
     TCGA-FB-A7DR      TCGA-H6-8124      TCGA-H6-A45N      TCGA-H8-A6C1 
"GABRD WILD-TYPE" "GABRD WILD-TYPE" "GABRD WILD-TYPE" "GABRD WILD-TYPE" 
     TCGA-IB-7644      TCGA-IB-7649      TCGA-IB-7885      TCGA-IB-7886 
"GABRD WILD-TYPE" "GABRD WILD-TYPE" "GABRD WILD-TYPE" "GABRD WILD-TYPE" 
     TCGA-IB-7887      TCGA-IB-7891      TCGA-IB-8126      TCGA-IB-8127 
"GABRD WILD-TYPE" "GABRD WILD-TYPE" "GABRD WILD-TYPE" "GABRD WILD-TYPE" 
     TCGA-IB-A5SS      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"GABRD WILD-TYPE" "GABRD WILD-TYPE" "GABRD WILD-TYPE" "GABRD WILD-TYPE" 
D422V10, continuous
[1] "Remove cluster labels:" "GABRD MUTATED"         
clus
  GABRD MUTATED GABRD WILD-TYPE 
              2              17 
     TCGA-FB-A4P5      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"GABRD WILD-TYPE" "GABRD WILD-TYPE" "GABRD WILD-TYPE" "GABRD WILD-TYPE" 
     TCGA-H6-8124      TCGA-H8-A6C1      TCGA-IB-7644      TCGA-IB-7649 
"GABRD WILD-TYPE" "GABRD WILD-TYPE" "GABRD WILD-TYPE" "GABRD WILD-TYPE" 
     TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7891      TCGA-IB-8126 
"GABRD WILD-TYPE" "GABRD WILD-TYPE" "GABRD WILD-TYPE" "GABRD WILD-TYPE" 
     TCGA-IB-8127      TCGA-IB-A5SS      TCGA-IB-A6UG      TCGA-LB-A7SX 
"GABRD WILD-TYPE" "GABRD WILD-TYPE" "GABRD WILD-TYPE" "GABRD WILD-TYPE" 
     TCGA-OE-A75W 
"GABRD WILD-TYPE" 
                 vv
clus              R0 R1 RX
  GABRD MUTATED    1  3  0
  GABRD WILD-TYPE 41 21  2
D422V11, multiclass
    clus
vv   GABRD MUTATED GABRD WILD-TYPE
  R0             1              41
  R1             3              21
  RX             0               2
D422V12, continuous

Clustering(423) Variable = SLC4A5 MUTATION ANALYSIS
D423V1, survival
                  sevent
clus2               0  1
  SLC4A5 MUTATED    3  5
  SLC4A5 WILD-TYPE 37 24
  SLC4A5 MUTATED SLC4A5 WILD-TYPE 
               8               61 
  SLC4A5 MUTATED SLC4A5 WILD-TYPE 
               5               24 
$`SLC4A5 MUTATED`
TCGA-F2-6879 TCGA-F2-7276 TCGA-FB-A78T TCGA-H6-A45N TCGA-HZ-7919 TCGA-HZ-8003 
       10.98         7.10         0.03         7.66         0.66         0.69 
TCGA-IB-7651 TCGA-IB-7888 
       19.82        43.79 

$`SLC4A5 WILD-TYPE`
TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-A44G TCGA-F2-A44H TCGA-FB-A4P5 TCGA-FB-A4P6 
        9.70        11.84         5.03        19.27         0.13        11.93 
TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A7DR TCGA-FZ-5920 TCGA-FZ-5922 TCGA-FZ-5923 
       12.66         2.47         5.46         2.01        36.20        20.81 
TCGA-H6-8124 TCGA-H8-A6C1 TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-7922 TCGA-HZ-7923 
       12.89        13.02         7.89         0.92         0.13         0.26 
TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8005 
       12.13        11.87         0.26         0.62         0.79         3.95 
TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H 
        0.92         0.53         0.16         2.99         0.76         0.95 
TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 
        6.38         1.51        11.41        49.38         4.77        21.90 
TCGA-IB-7649 TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7889 
       15.35        15.65        27.98         4.04         3.62        15.81 
TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-8127 
       19.66        16.04         3.85        15.98         0.56        17.16 
TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG 
       10.82         9.86         7.20        15.12         0.26         1.35 
TCGA-LB-A7SX TCGA-OE-A75W TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E 
        4.18         3.62         8.12        13.68        16.80        14.14 
TCGA-US-A77J 
       18.67 

  SLC4A5 MUTATED SLC4A5 WILD-TYPE 
            0.03             0.13 
  SLC4A5 MUTATED SLC4A5 WILD-TYPE 
           43.79            49.38 
  SLC4A5 MUTATED SLC4A5 WILD-TYPE 
            7.38             7.89 
[1] "0.0 - 43.8 (7.4)" "0.1 - 49.4 (7.9)"
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
  "SLC4A5 MUTATED" "SLC4A5 WILD-TYPE" "SLC4A5 WILD-TYPE"   "SLC4A5 MUTATED" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"SLC4A5 WILD-TYPE" "SLC4A5 WILD-TYPE" "SLC4A5 WILD-TYPE" "SLC4A5 WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
"SLC4A5 WILD-TYPE" "SLC4A5 WILD-TYPE"   "SLC4A5 MUTATED" "SLC4A5 WILD-TYPE" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"SLC4A5 WILD-TYPE" "SLC4A5 WILD-TYPE" "SLC4A5 WILD-TYPE" "SLC4A5 WILD-TYPE" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
  "SLC4A5 MUTATED" "SLC4A5 WILD-TYPE" "SLC4A5 WILD-TYPE" "SLC4A5 WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
  "SLC4A5 MUTATED" "SLC4A5 WILD-TYPE" "SLC4A5 WILD-TYPE" "SLC4A5 WILD-TYPE" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"SLC4A5 WILD-TYPE" "SLC4A5 WILD-TYPE" "SLC4A5 WILD-TYPE" "SLC4A5 WILD-TYPE" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
  "SLC4A5 MUTATED" "SLC4A5 WILD-TYPE" "SLC4A5 WILD-TYPE" "SLC4A5 WILD-TYPE" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
"SLC4A5 WILD-TYPE" "SLC4A5 WILD-TYPE" "SLC4A5 WILD-TYPE" "SLC4A5 WILD-TYPE" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
"SLC4A5 WILD-TYPE" "SLC4A5 WILD-TYPE" "SLC4A5 WILD-TYPE" "SLC4A5 WILD-TYPE" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
"SLC4A5 WILD-TYPE" "SLC4A5 WILD-TYPE" "SLC4A5 WILD-TYPE"   "SLC4A5 MUTATED" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
"SLC4A5 WILD-TYPE" "SLC4A5 WILD-TYPE" "SLC4A5 WILD-TYPE" "SLC4A5 WILD-TYPE" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
  "SLC4A5 MUTATED" "SLC4A5 WILD-TYPE" "SLC4A5 WILD-TYPE" "SLC4A5 WILD-TYPE" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
"SLC4A5 WILD-TYPE" "SLC4A5 WILD-TYPE" "SLC4A5 WILD-TYPE" "SLC4A5 WILD-TYPE" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"SLC4A5 WILD-TYPE" "SLC4A5 WILD-TYPE" "SLC4A5 WILD-TYPE" "SLC4A5 WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"SLC4A5 WILD-TYPE" "SLC4A5 WILD-TYPE" "SLC4A5 WILD-TYPE" "SLC4A5 WILD-TYPE" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
"SLC4A5 WILD-TYPE" "SLC4A5 WILD-TYPE" "SLC4A5 WILD-TYPE" "SLC4A5 WILD-TYPE" 
      TCGA-US-A77J 
"SLC4A5 WILD-TYPE" 
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
  "SLC4A5 MUTATED" "SLC4A5 WILD-TYPE" "SLC4A5 WILD-TYPE"   "SLC4A5 MUTATED" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"SLC4A5 WILD-TYPE" "SLC4A5 WILD-TYPE" "SLC4A5 WILD-TYPE" "SLC4A5 WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
"SLC4A5 WILD-TYPE" "SLC4A5 WILD-TYPE"   "SLC4A5 MUTATED" "SLC4A5 WILD-TYPE" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"SLC4A5 WILD-TYPE" "SLC4A5 WILD-TYPE" "SLC4A5 WILD-TYPE" "SLC4A5 WILD-TYPE" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
  "SLC4A5 MUTATED" "SLC4A5 WILD-TYPE" "SLC4A5 WILD-TYPE" "SLC4A5 WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
  "SLC4A5 MUTATED" "SLC4A5 WILD-TYPE" "SLC4A5 WILD-TYPE" "SLC4A5 WILD-TYPE" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"SLC4A5 WILD-TYPE" "SLC4A5 WILD-TYPE" "SLC4A5 WILD-TYPE" "SLC4A5 WILD-TYPE" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
  "SLC4A5 MUTATED" "SLC4A5 WILD-TYPE" "SLC4A5 WILD-TYPE" "SLC4A5 WILD-TYPE" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
"SLC4A5 WILD-TYPE" "SLC4A5 WILD-TYPE" "SLC4A5 WILD-TYPE" "SLC4A5 WILD-TYPE" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
"SLC4A5 WILD-TYPE" "SLC4A5 WILD-TYPE" "SLC4A5 WILD-TYPE" "SLC4A5 WILD-TYPE" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
"SLC4A5 WILD-TYPE" "SLC4A5 WILD-TYPE" "SLC4A5 WILD-TYPE"   "SLC4A5 MUTATED" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
"SLC4A5 WILD-TYPE" "SLC4A5 WILD-TYPE" "SLC4A5 WILD-TYPE" "SLC4A5 WILD-TYPE" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
  "SLC4A5 MUTATED" "SLC4A5 WILD-TYPE" "SLC4A5 WILD-TYPE" "SLC4A5 WILD-TYPE" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
"SLC4A5 WILD-TYPE" "SLC4A5 WILD-TYPE" "SLC4A5 WILD-TYPE" "SLC4A5 WILD-TYPE" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"SLC4A5 WILD-TYPE" "SLC4A5 WILD-TYPE" "SLC4A5 WILD-TYPE" "SLC4A5 WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"SLC4A5 WILD-TYPE" "SLC4A5 WILD-TYPE" "SLC4A5 WILD-TYPE" "SLC4A5 WILD-TYPE" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
"SLC4A5 WILD-TYPE" "SLC4A5 WILD-TYPE" "SLC4A5 WILD-TYPE" "SLC4A5 WILD-TYPE" 
      TCGA-US-A77J 
"SLC4A5 WILD-TYPE" 
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
  "SLC4A5 MUTATED" "SLC4A5 WILD-TYPE" "SLC4A5 WILD-TYPE"   "SLC4A5 MUTATED" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"SLC4A5 WILD-TYPE" "SLC4A5 WILD-TYPE" "SLC4A5 WILD-TYPE" "SLC4A5 WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
"SLC4A5 WILD-TYPE" "SLC4A5 WILD-TYPE"   "SLC4A5 MUTATED" "SLC4A5 WILD-TYPE" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"SLC4A5 WILD-TYPE" "SLC4A5 WILD-TYPE" "SLC4A5 WILD-TYPE" "SLC4A5 WILD-TYPE" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
  "SLC4A5 MUTATED" "SLC4A5 WILD-TYPE" "SLC4A5 WILD-TYPE" "SLC4A5 WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
  "SLC4A5 MUTATED" "SLC4A5 WILD-TYPE" "SLC4A5 WILD-TYPE" "SLC4A5 WILD-TYPE" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"SLC4A5 WILD-TYPE" "SLC4A5 WILD-TYPE" "SLC4A5 WILD-TYPE" "SLC4A5 WILD-TYPE" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
  "SLC4A5 MUTATED" "SLC4A5 WILD-TYPE" "SLC4A5 WILD-TYPE" "SLC4A5 WILD-TYPE" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
"SLC4A5 WILD-TYPE" "SLC4A5 WILD-TYPE" "SLC4A5 WILD-TYPE" "SLC4A5 WILD-TYPE" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
"SLC4A5 WILD-TYPE" "SLC4A5 WILD-TYPE" "SLC4A5 WILD-TYPE" "SLC4A5 WILD-TYPE" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
"SLC4A5 WILD-TYPE" "SLC4A5 WILD-TYPE" "SLC4A5 WILD-TYPE"   "SLC4A5 MUTATED" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
"SLC4A5 WILD-TYPE" "SLC4A5 WILD-TYPE" "SLC4A5 WILD-TYPE" "SLC4A5 WILD-TYPE" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
  "SLC4A5 MUTATED" "SLC4A5 WILD-TYPE" "SLC4A5 WILD-TYPE" "SLC4A5 WILD-TYPE" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
"SLC4A5 WILD-TYPE" "SLC4A5 WILD-TYPE" "SLC4A5 WILD-TYPE" "SLC4A5 WILD-TYPE" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"SLC4A5 WILD-TYPE" "SLC4A5 WILD-TYPE" "SLC4A5 WILD-TYPE" "SLC4A5 WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"SLC4A5 WILD-TYPE" "SLC4A5 WILD-TYPE" "SLC4A5 WILD-TYPE" "SLC4A5 WILD-TYPE" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
"SLC4A5 WILD-TYPE" "SLC4A5 WILD-TYPE" "SLC4A5 WILD-TYPE" "SLC4A5 WILD-TYPE" 
      TCGA-US-A77J 
"SLC4A5 WILD-TYPE" 
[1] "hr=" "1.2"
D423V2, continuous
                  vv
clus               STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  SLC4A5 MUTATED          0        0         1         8         0        0
  SLC4A5 WILD-TYPE        1        4        10        43         2        3
D423V3, multiclass
                  vv
clus               T1+T2 T3+T4
  SLC4A5 MUTATED       0     9
  SLC4A5 WILD-TYPE     6    57
D423V4, multiclass
       clus
vv      SLC4A5 MUTATED SLC4A5 WILD-TYPE
  T1+T2              0                6
  T3+T4              9               57
D423V5, binary
                  cls
clus                0  1
  SLC4A5 MUTATED    1  8
  SLC4A5 WILD-TYPE 16 46
[1] "tbl2"
                  cls
clus               [,1] [,2]
  SLC4A5 MUTATED      1    8
  SLC4A5 WILD-TYPE   16   46
   clus
vv  SLC4A5 MUTATED SLC4A5 WILD-TYPE
  0              1               16
  1              8               46
                  vv
clus               M0 M1 MX
  SLC4A5 MUTATED    6  0  3
  SLC4A5 WILD-TYPE 33  3 27
D423V6, multiclass
    clus
vv   SLC4A5 MUTATED SLC4A5 WILD-TYPE
  M0              6               33
  M1              0                3
  MX              3               27
D423V7, binary
                  cls
clus                0  1
  SLC4A5 MUTATED    6  3
  SLC4A5 WILD-TYPE 30 33
[1] "tbl2"
                  cls
clus               [,1] [,2]
  SLC4A5 MUTATED      6    3
  SLC4A5 WILD-TYPE   30   33
        clus
vv       SLC4A5 MUTATED SLC4A5 WILD-TYPE
  FEMALE              6               30
  MALE                3               33
                  vv
clus               PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  SLC4A5 MUTATED                                     7
  SLC4A5 WILD-TYPE                                  58
                  vv
clus               PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  SLC4A5 MUTATED                                       1
  SLC4A5 WILD-TYPE                                     3
                  vv
clus               PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  SLC4A5 MUTATED                                                  0
  SLC4A5 WILD-TYPE                                                2
D423V8, multiclass
                                                  clus
vv                                                 SLC4A5 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                           7
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                         1
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA              0
                                                  clus
vv                                                 SLC4A5 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                            58
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                           3
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                2
D423V9, continuous
D423V10, continuous
[1] "Remove cluster labels:" "SLC4A5 MUTATED"        
clus
  SLC4A5 MUTATED SLC4A5 WILD-TYPE 
               2               17 
      TCGA-FB-A4P5       TCGA-FB-A4P6       TCGA-FB-A5VM       TCGA-FB-A7DR 
"SLC4A5 WILD-TYPE" "SLC4A5 WILD-TYPE" "SLC4A5 WILD-TYPE" "SLC4A5 WILD-TYPE" 
      TCGA-H6-8124       TCGA-H8-A6C1       TCGA-IB-7644       TCGA-IB-7649 
"SLC4A5 WILD-TYPE" "SLC4A5 WILD-TYPE" "SLC4A5 WILD-TYPE" "SLC4A5 WILD-TYPE" 
      TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7891       TCGA-IB-8126 
"SLC4A5 WILD-TYPE" "SLC4A5 WILD-TYPE" "SLC4A5 WILD-TYPE" "SLC4A5 WILD-TYPE" 
      TCGA-IB-8127       TCGA-IB-A5SS       TCGA-IB-A6UG       TCGA-LB-A7SX 
"SLC4A5 WILD-TYPE" "SLC4A5 WILD-TYPE" "SLC4A5 WILD-TYPE" "SLC4A5 WILD-TYPE" 
      TCGA-OE-A75W 
"SLC4A5 WILD-TYPE" 
                  vv
clus               R0 R1 RX
  SLC4A5 MUTATED    6  2  0
  SLC4A5 WILD-TYPE 36 22  2
D423V11, multiclass
    clus
vv   SLC4A5 MUTATED SLC4A5 WILD-TYPE
  R0              6               36
  R1              2               22
  RX              0                2
D423V12, continuous

Clustering(424) Variable = XYLT2 MUTATION ANALYSIS
D424V1, survival
                 sevent
clus2              0  1
  XYLT2 MUTATED    3  1
  XYLT2 WILD-TYPE 37 28
  XYLT2 MUTATED XYLT2 WILD-TYPE 
              4              65 
  XYLT2 MUTATED XYLT2 WILD-TYPE 
              1              28 
$`XYLT2 MUTATED`
TCGA-HZ-8001 TCGA-HZ-8002 TCGA-IB-7651 TCGA-IB-7891 
        0.62         0.79        19.82        16.04 

$`XYLT2 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P5 TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR 
        0.13        11.93        12.66         2.47         0.03         5.46 
TCGA-FZ-5920 TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 
        2.01        36.20        20.81        12.89         7.66        13.02 
TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 
        7.89         0.92         0.66         0.13         0.26        12.13 
TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 
       11.87         0.26         0.69         3.95         0.92         0.53 
TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK 
        0.16         2.99         0.76         0.95         6.38         1.51 
TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7652 
       11.41        49.38         4.77        21.90        15.35        15.65 
TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 
       27.98         4.04         3.62        43.79        15.81        19.66 
TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP 
        3.85        15.98         0.56        17.16        10.82         9.86 
TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W 
        7.20        15.12         0.26         1.35         4.18         3.62 
TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
        8.12        13.68        16.80        14.14        18.67 

  XYLT2 MUTATED XYLT2 WILD-TYPE 
           0.62            0.03 
  XYLT2 MUTATED XYLT2 WILD-TYPE 
          19.82           49.38 
  XYLT2 MUTATED XYLT2 WILD-TYPE 
          8.415           7.660 
[1] "0.6 - 19.8 (8.4)" "0.0 - 49.4 (7.7)"
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE"   "XYLT2 MUTATED"   "XYLT2 MUTATED" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE"   "XYLT2 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE"   "XYLT2 MUTATED" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" 
     TCGA-US-A77J 
"XYLT2 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE"   "XYLT2 MUTATED"   "XYLT2 MUTATED" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE"   "XYLT2 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE"   "XYLT2 MUTATED" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" 
     TCGA-US-A77J 
"XYLT2 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE"   "XYLT2 MUTATED"   "XYLT2 MUTATED" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE"   "XYLT2 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE"   "XYLT2 MUTATED" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" 
     TCGA-US-A77J 
"XYLT2 WILD-TYPE" 
[1] "hr=" "1.9"
D424V2, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  XYLT2 MUTATED          0        0         0         3         1        0
  XYLT2 WILD-TYPE        1        4        11        48         1        3
D424V3, multiclass
                 vv
clus              T1+T2 T3+T4
  XYLT2 MUTATED       0     4
  XYLT2 WILD-TYPE     6    62
D424V4, multiclass
       clus
vv      XYLT2 MUTATED XYLT2 WILD-TYPE
  T1+T2             0               6
  T3+T4             4              62
D424V5, binary
                 cls
clus               0  1
  XYLT2 MUTATED    1  3
  XYLT2 WILD-TYPE 16 51
[1] "tbl2"
                 cls
clus              [,1] [,2]
  XYLT2 MUTATED      1    3
  XYLT2 WILD-TYPE   16   51
   clus
vv  XYLT2 MUTATED XYLT2 WILD-TYPE
  0             1              16
  1             3              51
                 vv
clus              M0 M1 MX
  XYLT2 MUTATED    2  0  2
  XYLT2 WILD-TYPE 37  3 28
D424V6, multiclass
    clus
vv   XYLT2 MUTATED XYLT2 WILD-TYPE
  M0             2              37
  M1             0               3
  MX             2              28
D424V7, binary
                 cls
clus               0  1
  XYLT2 MUTATED    1  3
  XYLT2 WILD-TYPE 35 33
[1] "tbl2"
                 cls
clus              [,1] [,2]
  XYLT2 MUTATED      1    3
  XYLT2 WILD-TYPE   35   33
        clus
vv       XYLT2 MUTATED XYLT2 WILD-TYPE
  FEMALE             1              35
  MALE               3              33
                 vv
clus              PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  XYLT2 MUTATED                                     4
  XYLT2 WILD-TYPE                                  61
                 vv
clus              PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  XYLT2 MUTATED                                       0
  XYLT2 WILD-TYPE                                     4
                 vv
clus              PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  XYLT2 MUTATED                                                  0
  XYLT2 WILD-TYPE                                                2
D424V8, multiclass
                                                  clus
vv                                                 XYLT2 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                          4
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                        0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA             0
                                                  clus
vv                                                 XYLT2 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                           61
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                          4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA               2
D424V9, continuous
[1] "Remove cluster labels:" "XYLT2 MUTATED"         
clus
  XYLT2 MUTATED XYLT2 WILD-TYPE 
              2              20 
     TCGA-F2-6880      TCGA-FB-A4P5      TCGA-FB-A4P6      TCGA-FB-A5VM 
"XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" 
     TCGA-FB-A78T      TCGA-FB-A7DR      TCGA-H6-8124      TCGA-H6-A45N 
"XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" 
     TCGA-H8-A6C1      TCGA-IB-7644      TCGA-IB-7649      TCGA-IB-7885 
"XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" 
     TCGA-IB-7886      TCGA-IB-7887      TCGA-IB-8126      TCGA-IB-8127 
"XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" 
     TCGA-IB-A5SS      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" 
D424V10, continuous
[1] "Remove cluster labels:" "XYLT2 MUTATED"         
clus
  XYLT2 MUTATED XYLT2 WILD-TYPE 
              2              17 
     TCGA-FB-A4P5      TCGA-FB-A4P6      TCGA-FB-A5VM      TCGA-FB-A78T 
"XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" 
     TCGA-FB-A7DR      TCGA-H6-8124      TCGA-H8-A6C1      TCGA-IB-7644 
"XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" 
     TCGA-IB-7649      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-8126 
"XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" 
     TCGA-IB-8127      TCGA-IB-A5SS      TCGA-IB-A6UG      TCGA-LB-A7SX 
"XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" "XYLT2 WILD-TYPE" 
     TCGA-OE-A75W 
"XYLT2 WILD-TYPE" 
                 vv
clus              R0 R1 RX
  XYLT2 MUTATED    4  0  0
  XYLT2 WILD-TYPE 38 24  2
D424V11, multiclass
    clus
vv   XYLT2 MUTATED XYLT2 WILD-TYPE
  R0             4              38
  R1             0              24
  RX             0               2
D424V12, continuous

Clustering(425) Variable = RIT1 MUTATION ANALYSIS
D425V1, survival
                sevent
clus2             0  1
  RIT1 MUTATED    1  2
  RIT1 WILD-TYPE 39 27
  RIT1 MUTATED RIT1 WILD-TYPE 
             3             66 
  RIT1 MUTATED RIT1 WILD-TYPE 
             2             27 
$`RIT1 MUTATED`
TCGA-H8-A6C1 TCGA-IB-7645 TCGA-IB-7889 
       13.02        49.38        15.81 

$`RIT1 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P5 TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR 
        0.13        11.93        12.66         2.47         0.03         5.46 
TCGA-FZ-5920 TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-HZ-7289 
        2.01        36.20        20.81        12.89         7.66         7.89 
TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 
        0.92         0.66         0.13         0.26        12.13        11.87 
TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 
        0.26         0.62         0.79         0.69         3.95         0.92 
TCGA-HZ-8317 TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH 
        0.53         0.16         2.99         0.76         0.95         6.38 
TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7651 
        1.51        11.41         4.77        21.90        15.35        19.82 
TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7890 
       15.65        27.98         4.04         3.62        43.79        19.66 
TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO 
       16.04         3.85        15.98         0.56        17.16        10.82 
TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX 
        9.86         7.20        15.12         0.26         1.35         4.18 
TCGA-OE-A75W TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
        3.62         8.12        13.68        16.80        14.14        18.67 

  RIT1 MUTATED RIT1 WILD-TYPE 
         13.02           0.03 
  RIT1 MUTATED RIT1 WILD-TYPE 
         49.38          43.79 
  RIT1 MUTATED RIT1 WILD-TYPE 
         15.81           7.15 
[1] "13.0 - 49.4 (15.8)" "0.0 - 43.8 (7.2)"  
    TCGA-F2-6879     TCGA-F2-6880     TCGA-F2-7273     TCGA-F2-7276 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-F2-A44G     TCGA-F2-A44H     TCGA-FB-A4P5     TCGA-FB-A4P6 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-FB-A545     TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-FB-A7DR 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-FZ-5920     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-H6-8124 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-H6-A45N     TCGA-H8-A6C1     TCGA-HZ-7289     TCGA-HZ-7918 
"RIT1 WILD-TYPE"   "RIT1 MUTATED" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-HZ-7919     TCGA-HZ-7922     TCGA-HZ-7923     TCGA-HZ-7924 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-HZ-7925     TCGA-HZ-7926     TCGA-HZ-8001     TCGA-HZ-8002 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-HZ-8003     TCGA-HZ-8005     TCGA-HZ-8315     TCGA-HZ-8317 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-HZ-8636     TCGA-HZ-8638     TCGA-HZ-A49G     TCGA-HZ-A49H 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-IB-7644     TCGA-IB-7645 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE"   "RIT1 MUTATED" 
    TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7651 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-IB-7888     TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891 
"RIT1 WILD-TYPE"   "RIT1 MUTATED" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-IB-7893     TCGA-IB-7897     TCGA-IB-8126     TCGA-IB-8127 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-IB-A5ST     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-PZ-A5RE     TCGA-Q3-A5QY     TCGA-US-A779     TCGA-US-A77E 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-US-A77J 
"RIT1 WILD-TYPE" 
    TCGA-F2-6879     TCGA-F2-6880     TCGA-F2-7273     TCGA-F2-7276 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-F2-A44G     TCGA-F2-A44H     TCGA-FB-A4P5     TCGA-FB-A4P6 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-FB-A545     TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-FB-A7DR 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-FZ-5920     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-H6-8124 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-H6-A45N     TCGA-H8-A6C1     TCGA-HZ-7289     TCGA-HZ-7918 
"RIT1 WILD-TYPE"   "RIT1 MUTATED" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-HZ-7919     TCGA-HZ-7922     TCGA-HZ-7923     TCGA-HZ-7924 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-HZ-7925     TCGA-HZ-7926     TCGA-HZ-8001     TCGA-HZ-8002 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-HZ-8003     TCGA-HZ-8005     TCGA-HZ-8315     TCGA-HZ-8317 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-HZ-8636     TCGA-HZ-8638     TCGA-HZ-A49G     TCGA-HZ-A49H 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-IB-7644     TCGA-IB-7645 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE"   "RIT1 MUTATED" 
    TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7651 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-IB-7888     TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891 
"RIT1 WILD-TYPE"   "RIT1 MUTATED" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-IB-7893     TCGA-IB-7897     TCGA-IB-8126     TCGA-IB-8127 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-IB-A5ST     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-PZ-A5RE     TCGA-Q3-A5QY     TCGA-US-A779     TCGA-US-A77E 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-US-A77J 
"RIT1 WILD-TYPE" 
    TCGA-F2-6879     TCGA-F2-6880     TCGA-F2-7273     TCGA-F2-7276 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-F2-A44G     TCGA-F2-A44H     TCGA-FB-A4P5     TCGA-FB-A4P6 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-FB-A545     TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-FB-A7DR 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-FZ-5920     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-H6-8124 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-H6-A45N     TCGA-H8-A6C1     TCGA-HZ-7289     TCGA-HZ-7918 
"RIT1 WILD-TYPE"   "RIT1 MUTATED" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-HZ-7919     TCGA-HZ-7922     TCGA-HZ-7923     TCGA-HZ-7924 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-HZ-7925     TCGA-HZ-7926     TCGA-HZ-8001     TCGA-HZ-8002 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-HZ-8003     TCGA-HZ-8005     TCGA-HZ-8315     TCGA-HZ-8317 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-HZ-8636     TCGA-HZ-8638     TCGA-HZ-A49G     TCGA-HZ-A49H 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-IB-7644     TCGA-IB-7645 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE"   "RIT1 MUTATED" 
    TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7651 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-IB-7888     TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891 
"RIT1 WILD-TYPE"   "RIT1 MUTATED" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-IB-7893     TCGA-IB-7897     TCGA-IB-8126     TCGA-IB-8127 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-IB-A5ST     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-PZ-A5RE     TCGA-Q3-A5QY     TCGA-US-A779     TCGA-US-A77E 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-US-A77J 
"RIT1 WILD-TYPE" 
[1] "hr=" "4"  
D425V2, continuous
                vv
clus             STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  RIT1 MUTATED          0        0         1         2         0        0
  RIT1 WILD-TYPE        1        4        10        49         2        3
D425V3, multiclass
                vv
clus             T1+T2 T3+T4
  RIT1 MUTATED       0     3
  RIT1 WILD-TYPE     6    63
D425V4, multiclass
       clus
vv      RIT1 MUTATED RIT1 WILD-TYPE
  T1+T2            0              6
  T3+T4            3             63
D425V5, binary
                cls
clus              0  1
  RIT1 MUTATED    1  2
  RIT1 WILD-TYPE 16 52
[1] "tbl2"
                cls
clus             [,1] [,2]
  RIT1 MUTATED      1    2
  RIT1 WILD-TYPE   16   52
   clus
vv  RIT1 MUTATED RIT1 WILD-TYPE
  0            1             16
  1            2             52
                vv
clus             M0 M1 MX
  RIT1 MUTATED    2  0  1
  RIT1 WILD-TYPE 37  3 29
D425V6, multiclass
    clus
vv   RIT1 MUTATED RIT1 WILD-TYPE
  M0            2             37
  M1            0              3
  MX            1             29
D425V7, binary
                cls
clus              0  1
  RIT1 MUTATED    2  1
  RIT1 WILD-TYPE 34 35
[1] "tbl2"
                cls
clus             [,1] [,2]
  RIT1 MUTATED      2    1
  RIT1 WILD-TYPE   34   35
        clus
vv       RIT1 MUTATED RIT1 WILD-TYPE
  FEMALE            2             34
  MALE              1             35
                vv
clus             PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  RIT1 MUTATED                                     2
  RIT1 WILD-TYPE                                  63
                vv
clus             PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  RIT1 MUTATED                                       1
  RIT1 WILD-TYPE                                     3
                vv
clus             PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  RIT1 MUTATED                                                  0
  RIT1 WILD-TYPE                                                2
D425V8, multiclass
                                                  clus
vv                                                 RIT1 MUTATED RIT1 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                         2             63
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                       1              3
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA            0              2
D425V9, continuous
[1] "Remove cluster labels:" "RIT1 MUTATED"          
clus
  RIT1 MUTATED RIT1 WILD-TYPE 
             1             21 
    TCGA-F2-6880     TCGA-FB-A4P5     TCGA-FB-A4P6     TCGA-FB-A5VM 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-FB-A78T     TCGA-FB-A7DR     TCGA-H6-8124     TCGA-H6-A45N 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-IB-7644     TCGA-IB-7649     TCGA-IB-7651     TCGA-IB-7885 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-IB-7886     TCGA-IB-7887     TCGA-IB-7891     TCGA-IB-8126 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-IB-8127     TCGA-IB-A5SS     TCGA-IB-A6UG     TCGA-LB-A7SX 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-OE-A75W 
"RIT1 WILD-TYPE" 
D425V10, continuous
[1] "Remove cluster labels:" "RIT1 MUTATED"          
clus
  RIT1 MUTATED RIT1 WILD-TYPE 
             1             18 
    TCGA-FB-A4P5     TCGA-FB-A4P6     TCGA-FB-A5VM     TCGA-FB-A78T 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-FB-A7DR     TCGA-H6-8124     TCGA-IB-7644     TCGA-IB-7649 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-IB-7651     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7891 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-IB-8126     TCGA-IB-8127     TCGA-IB-A5SS     TCGA-IB-A6UG 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-LB-A7SX     TCGA-OE-A75W 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
                vv
clus             R0 R1 RX
  RIT1 MUTATED    3  0  0
  RIT1 WILD-TYPE 39 24  2
D425V11, multiclass
    clus
vv   RIT1 MUTATED RIT1 WILD-TYPE
  R0            3             39
  R1            0             24
  RX            0              2
D425V12, continuous

Clustering(426) Variable = HSP90AA1 MUTATION ANALYSIS
D426V1, survival
                    sevent
clus2                 0  1
  HSP90AA1 MUTATED    2  3
  HSP90AA1 WILD-TYPE 38 26
  HSP90AA1 MUTATED HSP90AA1 WILD-TYPE 
                 5                 64 
  HSP90AA1 MUTATED HSP90AA1 WILD-TYPE 
                 3                 26 
$`HSP90AA1 MUTATED`
TCGA-HZ-8636 TCGA-IB-7649 TCGA-IB-7651 TCGA-IB-7889 TCGA-IB-8127 
        0.16        15.35        19.82        15.81        17.16 

$`HSP90AA1 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P5 TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR 
        0.13        11.93        12.66         2.47         0.03         5.46 
TCGA-FZ-5920 TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 
        2.01        36.20        20.81        12.89         7.66        13.02 
TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 
        7.89         0.92         0.66         0.13         0.26        12.13 
TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 
       11.87         0.26         0.62         0.79         0.69         3.95 
TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH 
        0.92         0.53         2.99         0.76         0.95         6.38 
TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7652 
        1.51        11.41        49.38         4.77        21.90        15.65 
TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7890 TCGA-IB-7891 
       27.98         4.04         3.62        43.79        19.66        16.04 
TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ 
        3.85        15.98         0.56        10.82         9.86         7.20 
TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W TCGA-PZ-A5RE 
       15.12         0.26         1.35         4.18         3.62         8.12 
TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
       13.68        16.80        14.14        18.67 

  HSP90AA1 MUTATED HSP90AA1 WILD-TYPE 
              0.16               0.03 
  HSP90AA1 MUTATED HSP90AA1 WILD-TYPE 
             19.82              49.38 
  HSP90AA1 MUTATED HSP90AA1 WILD-TYPE 
             15.81               7.15 
[1] "0.2 - 19.8 (15.8)" "0.0 - 49.4 (7.2)" 
        TCGA-F2-6879         TCGA-F2-6880         TCGA-F2-7273 
"HSP90AA1 WILD-TYPE" "HSP90AA1 WILD-TYPE" "HSP90AA1 WILD-TYPE" 
        TCGA-F2-7276         TCGA-F2-A44G         TCGA-F2-A44H 
"HSP90AA1 WILD-TYPE" "HSP90AA1 WILD-TYPE" "HSP90AA1 WILD-TYPE" 
        TCGA-FB-A4P5         TCGA-FB-A4P6         TCGA-FB-A545 
"HSP90AA1 WILD-TYPE" "HSP90AA1 WILD-TYPE" "HSP90AA1 WILD-TYPE" 
        TCGA-FB-A5VM         TCGA-FB-A78T         TCGA-FB-A7DR 
"HSP90AA1 WILD-TYPE" "HSP90AA1 WILD-TYPE" "HSP90AA1 WILD-TYPE" 
        TCGA-FZ-5920         TCGA-FZ-5922         TCGA-FZ-5923 
"HSP90AA1 WILD-TYPE" "HSP90AA1 WILD-TYPE" "HSP90AA1 WILD-TYPE" 
        TCGA-H6-8124         TCGA-H6-A45N         TCGA-H8-A6C1 
"HSP90AA1 WILD-TYPE" "HSP90AA1 WILD-TYPE" "HSP90AA1 WILD-TYPE" 
        TCGA-HZ-7289         TCGA-HZ-7918         TCGA-HZ-7919 
"HSP90AA1 WILD-TYPE" "HSP90AA1 WILD-TYPE" "HSP90AA1 WILD-TYPE" 
        TCGA-HZ-7922         TCGA-HZ-7923         TCGA-HZ-7924 
"HSP90AA1 WILD-TYPE" "HSP90AA1 WILD-TYPE" "HSP90AA1 WILD-TYPE" 
        TCGA-HZ-7925         TCGA-HZ-7926         TCGA-HZ-8001 
"HSP90AA1 WILD-TYPE" "HSP90AA1 WILD-TYPE" "HSP90AA1 WILD-TYPE" 
        TCGA-HZ-8002         TCGA-HZ-8003         TCGA-HZ-8005 
"HSP90AA1 WILD-TYPE" "HSP90AA1 WILD-TYPE" "HSP90AA1 WILD-TYPE" 
        TCGA-HZ-8315         TCGA-HZ-8317         TCGA-HZ-8636 
"HSP90AA1 WILD-TYPE" "HSP90AA1 WILD-TYPE"   "HSP90AA1 MUTATED" 
        TCGA-HZ-8638         TCGA-HZ-A49G         TCGA-HZ-A49H 
"HSP90AA1 WILD-TYPE" "HSP90AA1 WILD-TYPE" "HSP90AA1 WILD-TYPE" 
        TCGA-HZ-A4BH         TCGA-HZ-A4BK         TCGA-IB-7644 
"HSP90AA1 WILD-TYPE" "HSP90AA1 WILD-TYPE" "HSP90AA1 WILD-TYPE" 
        TCGA-IB-7645         TCGA-IB-7646         TCGA-IB-7647 
"HSP90AA1 WILD-TYPE" "HSP90AA1 WILD-TYPE" "HSP90AA1 WILD-TYPE" 
        TCGA-IB-7649         TCGA-IB-7651         TCGA-IB-7652 
  "HSP90AA1 MUTATED"   "HSP90AA1 MUTATED" "HSP90AA1 WILD-TYPE" 
        TCGA-IB-7885         TCGA-IB-7886         TCGA-IB-7887 
"HSP90AA1 WILD-TYPE" "HSP90AA1 WILD-TYPE" "HSP90AA1 WILD-TYPE" 
        TCGA-IB-7888         TCGA-IB-7889         TCGA-IB-7890 
"HSP90AA1 WILD-TYPE"   "HSP90AA1 MUTATED" "HSP90AA1 WILD-TYPE" 
        TCGA-IB-7891         TCGA-IB-7893         TCGA-IB-7897 
"HSP90AA1 WILD-TYPE" "HSP90AA1 WILD-TYPE" "HSP90AA1 WILD-TYPE" 
        TCGA-IB-8126         TCGA-IB-8127         TCGA-IB-A5SO 
"HSP90AA1 WILD-TYPE"   "HSP90AA1 MUTATED" "HSP90AA1 WILD-TYPE" 
        TCGA-IB-A5SP         TCGA-IB-A5SQ         TCGA-IB-A5SS 
"HSP90AA1 WILD-TYPE" "HSP90AA1 WILD-TYPE" "HSP90AA1 WILD-TYPE" 
        TCGA-IB-A5ST         TCGA-IB-A6UG         TCGA-LB-A7SX 
"HSP90AA1 WILD-TYPE" "HSP90AA1 WILD-TYPE" "HSP90AA1 WILD-TYPE" 
        TCGA-OE-A75W         TCGA-PZ-A5RE         TCGA-Q3-A5QY 
"HSP90AA1 WILD-TYPE" "HSP90AA1 WILD-TYPE" "HSP90AA1 WILD-TYPE" 
        TCGA-US-A779         TCGA-US-A77E         TCGA-US-A77J 
"HSP90AA1 WILD-TYPE" "HSP90AA1 WILD-TYPE" "HSP90AA1 WILD-TYPE" 
        TCGA-F2-6879         TCGA-F2-6880         TCGA-F2-7273 
"HSP90AA1 WILD-TYPE" "HSP90AA1 WILD-TYPE" "HSP90AA1 WILD-TYPE" 
        TCGA-F2-7276         TCGA-F2-A44G         TCGA-F2-A44H 
"HSP90AA1 WILD-TYPE" "HSP90AA1 WILD-TYPE" "HSP90AA1 WILD-TYPE" 
        TCGA-FB-A4P5         TCGA-FB-A4P6         TCGA-FB-A545 
"HSP90AA1 WILD-TYPE" "HSP90AA1 WILD-TYPE" "HSP90AA1 WILD-TYPE" 
        TCGA-FB-A5VM         TCGA-FB-A78T         TCGA-FB-A7DR 
"HSP90AA1 WILD-TYPE" "HSP90AA1 WILD-TYPE" "HSP90AA1 WILD-TYPE" 
        TCGA-FZ-5920         TCGA-FZ-5922         TCGA-FZ-5923 
"HSP90AA1 WILD-TYPE" "HSP90AA1 WILD-TYPE" "HSP90AA1 WILD-TYPE" 
        TCGA-H6-8124         TCGA-H6-A45N         TCGA-H8-A6C1 
"HSP90AA1 WILD-TYPE" "HSP90AA1 WILD-TYPE" "HSP90AA1 WILD-TYPE" 
        TCGA-HZ-7289         TCGA-HZ-7918         TCGA-HZ-7919 
"HSP90AA1 WILD-TYPE" "HSP90AA1 WILD-TYPE" "HSP90AA1 WILD-TYPE" 
        TCGA-HZ-7922         TCGA-HZ-7923         TCGA-HZ-7924 
"HSP90AA1 WILD-TYPE" "HSP90AA1 WILD-TYPE" "HSP90AA1 WILD-TYPE" 
        TCGA-HZ-7925         TCGA-HZ-7926         TCGA-HZ-8001 
"HSP90AA1 WILD-TYPE" "HSP90AA1 WILD-TYPE" "HSP90AA1 WILD-TYPE" 
        TCGA-HZ-8002         TCGA-HZ-8003         TCGA-HZ-8005 
"HSP90AA1 WILD-TYPE" "HSP90AA1 WILD-TYPE" "HSP90AA1 WILD-TYPE" 
        TCGA-HZ-8315         TCGA-HZ-8317         TCGA-HZ-8636 
"HSP90AA1 WILD-TYPE" "HSP90AA1 WILD-TYPE"   "HSP90AA1 MUTATED" 
        TCGA-HZ-8638         TCGA-HZ-A49G         TCGA-HZ-A49H 
"HSP90AA1 WILD-TYPE" "HSP90AA1 WILD-TYPE" "HSP90AA1 WILD-TYPE" 
        TCGA-HZ-A4BH         TCGA-HZ-A4BK         TCGA-IB-7644 
"HSP90AA1 WILD-TYPE" "HSP90AA1 WILD-TYPE" "HSP90AA1 WILD-TYPE" 
        TCGA-IB-7645         TCGA-IB-7646         TCGA-IB-7647 
"HSP90AA1 WILD-TYPE" "HSP90AA1 WILD-TYPE" "HSP90AA1 WILD-TYPE" 
        TCGA-IB-7649         TCGA-IB-7651         TCGA-IB-7652 
  "HSP90AA1 MUTATED"   "HSP90AA1 MUTATED" "HSP90AA1 WILD-TYPE" 
        TCGA-IB-7885         TCGA-IB-7886         TCGA-IB-7887 
"HSP90AA1 WILD-TYPE" "HSP90AA1 WILD-TYPE" "HSP90AA1 WILD-TYPE" 
        TCGA-IB-7888         TCGA-IB-7889         TCGA-IB-7890 
"HSP90AA1 WILD-TYPE"   "HSP90AA1 MUTATED" "HSP90AA1 WILD-TYPE" 
        TCGA-IB-7891         TCGA-IB-7893         TCGA-IB-7897 
"HSP90AA1 WILD-TYPE" "HSP90AA1 WILD-TYPE" "HSP90AA1 WILD-TYPE" 
        TCGA-IB-8126         TCGA-IB-8127         TCGA-IB-A5SO 
"HSP90AA1 WILD-TYPE"   "HSP90AA1 MUTATED" "HSP90AA1 WILD-TYPE" 
        TCGA-IB-A5SP         TCGA-IB-A5SQ         TCGA-IB-A5SS 
"HSP90AA1 WILD-TYPE" "HSP90AA1 WILD-TYPE" "HSP90AA1 WILD-TYPE" 
        TCGA-IB-A5ST         TCGA-IB-A6UG         TCGA-LB-A7SX 
"HSP90AA1 WILD-TYPE" "HSP90AA1 WILD-TYPE" "HSP90AA1 WILD-TYPE" 
        TCGA-OE-A75W         TCGA-PZ-A5RE         TCGA-Q3-A5QY 
"HSP90AA1 WILD-TYPE" "HSP90AA1 WILD-TYPE" "HSP90AA1 WILD-TYPE" 
        TCGA-US-A779         TCGA-US-A77E         TCGA-US-A77J 
"HSP90AA1 WILD-TYPE" "HSP90AA1 WILD-TYPE" "HSP90AA1 WILD-TYPE" 
        TCGA-F2-6879         TCGA-F2-6880         TCGA-F2-7273 
"HSP90AA1 WILD-TYPE" "HSP90AA1 WILD-TYPE" "HSP90AA1 WILD-TYPE" 
        TCGA-F2-7276         TCGA-F2-A44G         TCGA-F2-A44H 
"HSP90AA1 WILD-TYPE" "HSP90AA1 WILD-TYPE" "HSP90AA1 WILD-TYPE" 
        TCGA-FB-A4P5         TCGA-FB-A4P6         TCGA-FB-A545 
"HSP90AA1 WILD-TYPE" "HSP90AA1 WILD-TYPE" "HSP90AA1 WILD-TYPE" 
        TCGA-FB-A5VM         TCGA-FB-A78T         TCGA-FB-A7DR 
"HSP90AA1 WILD-TYPE" "HSP90AA1 WILD-TYPE" "HSP90AA1 WILD-TYPE" 
        TCGA-FZ-5920         TCGA-FZ-5922         TCGA-FZ-5923 
"HSP90AA1 WILD-TYPE" "HSP90AA1 WILD-TYPE" "HSP90AA1 WILD-TYPE" 
        TCGA-H6-8124         TCGA-H6-A45N         TCGA-H8-A6C1 
"HSP90AA1 WILD-TYPE" "HSP90AA1 WILD-TYPE" "HSP90AA1 WILD-TYPE" 
        TCGA-HZ-7289         TCGA-HZ-7918         TCGA-HZ-7919 
"HSP90AA1 WILD-TYPE" "HSP90AA1 WILD-TYPE" "HSP90AA1 WILD-TYPE" 
        TCGA-HZ-7922         TCGA-HZ-7923         TCGA-HZ-7924 
"HSP90AA1 WILD-TYPE" "HSP90AA1 WILD-TYPE" "HSP90AA1 WILD-TYPE" 
        TCGA-HZ-7925         TCGA-HZ-7926         TCGA-HZ-8001 
"HSP90AA1 WILD-TYPE" "HSP90AA1 WILD-TYPE" "HSP90AA1 WILD-TYPE" 
        TCGA-HZ-8002         TCGA-HZ-8003         TCGA-HZ-8005 
"HSP90AA1 WILD-TYPE" "HSP90AA1 WILD-TYPE" "HSP90AA1 WILD-TYPE" 
        TCGA-HZ-8315         TCGA-HZ-8317         TCGA-HZ-8636 
"HSP90AA1 WILD-TYPE" "HSP90AA1 WILD-TYPE"   "HSP90AA1 MUTATED" 
        TCGA-HZ-8638         TCGA-HZ-A49G         TCGA-HZ-A49H 
"HSP90AA1 WILD-TYPE" "HSP90AA1 WILD-TYPE" "HSP90AA1 WILD-TYPE" 
        TCGA-HZ-A4BH         TCGA-HZ-A4BK         TCGA-IB-7644 
"HSP90AA1 WILD-TYPE" "HSP90AA1 WILD-TYPE" "HSP90AA1 WILD-TYPE" 
        TCGA-IB-7645         TCGA-IB-7646         TCGA-IB-7647 
"HSP90AA1 WILD-TYPE" "HSP90AA1 WILD-TYPE" "HSP90AA1 WILD-TYPE" 
        TCGA-IB-7649         TCGA-IB-7651         TCGA-IB-7652 
  "HSP90AA1 MUTATED"   "HSP90AA1 MUTATED" "HSP90AA1 WILD-TYPE" 
        TCGA-IB-7885         TCGA-IB-7886         TCGA-IB-7887 
"HSP90AA1 WILD-TYPE" "HSP90AA1 WILD-TYPE" "HSP90AA1 WILD-TYPE" 
        TCGA-IB-7888         TCGA-IB-7889         TCGA-IB-7890 
"HSP90AA1 WILD-TYPE"   "HSP90AA1 MUTATED" "HSP90AA1 WILD-TYPE" 
        TCGA-IB-7891         TCGA-IB-7893         TCGA-IB-7897 
"HSP90AA1 WILD-TYPE" "HSP90AA1 WILD-TYPE" "HSP90AA1 WILD-TYPE" 
        TCGA-IB-8126         TCGA-IB-8127         TCGA-IB-A5SO 
"HSP90AA1 WILD-TYPE"   "HSP90AA1 MUTATED" "HSP90AA1 WILD-TYPE" 
        TCGA-IB-A5SP         TCGA-IB-A5SQ         TCGA-IB-A5SS 
"HSP90AA1 WILD-TYPE" "HSP90AA1 WILD-TYPE" "HSP90AA1 WILD-TYPE" 
        TCGA-IB-A5ST         TCGA-IB-A6UG         TCGA-LB-A7SX 
"HSP90AA1 WILD-TYPE" "HSP90AA1 WILD-TYPE" "HSP90AA1 WILD-TYPE" 
        TCGA-OE-A75W         TCGA-PZ-A5RE         TCGA-Q3-A5QY 
"HSP90AA1 WILD-TYPE" "HSP90AA1 WILD-TYPE" "HSP90AA1 WILD-TYPE" 
        TCGA-US-A779         TCGA-US-A77E         TCGA-US-A77J 
"HSP90AA1 WILD-TYPE" "HSP90AA1 WILD-TYPE" "HSP90AA1 WILD-TYPE" 
[1] "hr=" "1"  
D426V2, continuous
                    vv
clus                 STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  HSP90AA1 MUTATED          0        1         0         4         0        1
  HSP90AA1 WILD-TYPE        1        3        11        47         2        2
D426V3, multiclass
                    vv
clus                 T1+T2 T3+T4
  HSP90AA1 MUTATED       1     5
  HSP90AA1 WILD-TYPE     5    61
D426V4, multiclass
       clus
vv      HSP90AA1 MUTATED HSP90AA1 WILD-TYPE
  T1+T2                1                  5
  T3+T4                5                 61
D426V5, binary
                    cls
clus                  0  1
  HSP90AA1 MUTATED    2  4
  HSP90AA1 WILD-TYPE 15 50
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  HSP90AA1 MUTATED      2    4
  HSP90AA1 WILD-TYPE   15   50
   clus
vv  HSP90AA1 MUTATED HSP90AA1 WILD-TYPE
  0                2                 15
  1                4                 50
                    vv
clus                 M0 M1 MX
  HSP90AA1 MUTATED    4  1  1
  HSP90AA1 WILD-TYPE 35  2 29
D426V6, multiclass
    clus
vv   HSP90AA1 MUTATED HSP90AA1 WILD-TYPE
  M0                4                 35
  M1                1                  2
  MX                1                 29
D426V7, binary
                    cls
clus                  0  1
  HSP90AA1 MUTATED    4  2
  HSP90AA1 WILD-TYPE 32 34
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  HSP90AA1 MUTATED      4    2
  HSP90AA1 WILD-TYPE   32   34
        clus
vv       HSP90AA1 MUTATED HSP90AA1 WILD-TYPE
  FEMALE                4                 32
  MALE                  2                 34
                    vv
clus                 PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  HSP90AA1 MUTATED                                     6
  HSP90AA1 WILD-TYPE                                  59
                    vv
clus                 PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  HSP90AA1 MUTATED                                       0
  HSP90AA1 WILD-TYPE                                     4
                    vv
clus                 PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  HSP90AA1 MUTATED                                                  0
  HSP90AA1 WILD-TYPE                                                2
D426V8, multiclass
                                                  clus
vv                                                 HSP90AA1 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                             6
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                           0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                0
                                                  clus
vv                                                 HSP90AA1 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                              59
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                             4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                  2
D426V9, continuous
D426V10, continuous
                    vv
clus                 R0 R1 RX
  HSP90AA1 MUTATED    3  3  0
  HSP90AA1 WILD-TYPE 39 21  2
D426V11, multiclass
    clus
vv   HSP90AA1 MUTATED HSP90AA1 WILD-TYPE
  R0                3                 39
  R1                3                 21
  RX                0                  2
D426V12, continuous

Clustering(427) Variable = STK10 MUTATION ANALYSIS
D427V1, survival
                 sevent
clus2              0  1
  STK10 MUTATED    4  1
  STK10 WILD-TYPE 36 28
  STK10 MUTATED STK10 WILD-TYPE 
              5              64 
  STK10 MUTATED STK10 WILD-TYPE 
              1              28 
$`STK10 MUTATED`
TCGA-H6-8124 TCGA-HZ-7919 TCGA-HZ-A4BH TCGA-IB-7651 TCGA-LB-A7SX 
       12.89         0.66         6.38        19.82         4.18 

$`STK10 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P5 TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR 
        0.13        11.93        12.66         2.47         0.03         5.46 
TCGA-FZ-5920 TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7289 
        2.01        36.20        20.81         7.66        13.02         7.89 
TCGA-HZ-7918 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 
        0.92         0.13         0.26        12.13        11.87         0.26 
TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 
        0.62         0.79         0.69         3.95         0.92         0.53 
TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BK TCGA-IB-7644 
        0.16         2.99         0.76         0.95         1.51        11.41 
TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7652 TCGA-IB-7885 
       49.38         4.77        21.90        15.35        15.65        27.98 
TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 
        4.04         3.62        43.79        15.81        19.66        16.04 
TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP 
        3.85        15.98         0.56        17.16        10.82         9.86 
TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-OE-A75W TCGA-PZ-A5RE 
        7.20        15.12         0.26         1.35         3.62         8.12 
TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
       13.68        16.80        14.14        18.67 

  STK10 MUTATED STK10 WILD-TYPE 
           0.66            0.03 
  STK10 MUTATED STK10 WILD-TYPE 
          19.82           49.38 
  STK10 MUTATED STK10 WILD-TYPE 
          6.380           7.775 
[1] "0.7 - 19.8 (6.4)" "0.0 - 49.4 (7.8)"
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"STK10 WILD-TYPE" "STK10 WILD-TYPE" "STK10 WILD-TYPE" "STK10 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"STK10 WILD-TYPE" "STK10 WILD-TYPE" "STK10 WILD-TYPE" "STK10 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"STK10 WILD-TYPE" "STK10 WILD-TYPE" "STK10 WILD-TYPE" "STK10 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"STK10 WILD-TYPE" "STK10 WILD-TYPE" "STK10 WILD-TYPE"   "STK10 MUTATED" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"STK10 WILD-TYPE" "STK10 WILD-TYPE" "STK10 WILD-TYPE" "STK10 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
  "STK10 MUTATED" "STK10 WILD-TYPE" "STK10 WILD-TYPE" "STK10 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"STK10 WILD-TYPE" "STK10 WILD-TYPE" "STK10 WILD-TYPE" "STK10 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"STK10 WILD-TYPE" "STK10 WILD-TYPE" "STK10 WILD-TYPE" "STK10 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"STK10 WILD-TYPE" "STK10 WILD-TYPE" "STK10 WILD-TYPE" "STK10 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
  "STK10 MUTATED" "STK10 WILD-TYPE" "STK10 WILD-TYPE" "STK10 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"STK10 WILD-TYPE" "STK10 WILD-TYPE" "STK10 WILD-TYPE"   "STK10 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"STK10 WILD-TYPE" "STK10 WILD-TYPE" "STK10 WILD-TYPE" "STK10 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"STK10 WILD-TYPE" "STK10 WILD-TYPE" "STK10 WILD-TYPE" "STK10 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"STK10 WILD-TYPE" "STK10 WILD-TYPE" "STK10 WILD-TYPE" "STK10 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"STK10 WILD-TYPE" "STK10 WILD-TYPE" "STK10 WILD-TYPE" "STK10 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"STK10 WILD-TYPE" "STK10 WILD-TYPE"   "STK10 MUTATED" "STK10 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"STK10 WILD-TYPE" "STK10 WILD-TYPE" "STK10 WILD-TYPE" "STK10 WILD-TYPE" 
     TCGA-US-A77J 
"STK10 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"STK10 WILD-TYPE" "STK10 WILD-TYPE" "STK10 WILD-TYPE" "STK10 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"STK10 WILD-TYPE" "STK10 WILD-TYPE" "STK10 WILD-TYPE" "STK10 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"STK10 WILD-TYPE" "STK10 WILD-TYPE" "STK10 WILD-TYPE" "STK10 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"STK10 WILD-TYPE" "STK10 WILD-TYPE" "STK10 WILD-TYPE"   "STK10 MUTATED" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"STK10 WILD-TYPE" "STK10 WILD-TYPE" "STK10 WILD-TYPE" "STK10 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
  "STK10 MUTATED" "STK10 WILD-TYPE" "STK10 WILD-TYPE" "STK10 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"STK10 WILD-TYPE" "STK10 WILD-TYPE" "STK10 WILD-TYPE" "STK10 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"STK10 WILD-TYPE" "STK10 WILD-TYPE" "STK10 WILD-TYPE" "STK10 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"STK10 WILD-TYPE" "STK10 WILD-TYPE" "STK10 WILD-TYPE" "STK10 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
  "STK10 MUTATED" "STK10 WILD-TYPE" "STK10 WILD-TYPE" "STK10 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"STK10 WILD-TYPE" "STK10 WILD-TYPE" "STK10 WILD-TYPE"   "STK10 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"STK10 WILD-TYPE" "STK10 WILD-TYPE" "STK10 WILD-TYPE" "STK10 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"STK10 WILD-TYPE" "STK10 WILD-TYPE" "STK10 WILD-TYPE" "STK10 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"STK10 WILD-TYPE" "STK10 WILD-TYPE" "STK10 WILD-TYPE" "STK10 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"STK10 WILD-TYPE" "STK10 WILD-TYPE" "STK10 WILD-TYPE" "STK10 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"STK10 WILD-TYPE" "STK10 WILD-TYPE"   "STK10 MUTATED" "STK10 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"STK10 WILD-TYPE" "STK10 WILD-TYPE" "STK10 WILD-TYPE" "STK10 WILD-TYPE" 
     TCGA-US-A77J 
"STK10 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"STK10 WILD-TYPE" "STK10 WILD-TYPE" "STK10 WILD-TYPE" "STK10 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"STK10 WILD-TYPE" "STK10 WILD-TYPE" "STK10 WILD-TYPE" "STK10 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"STK10 WILD-TYPE" "STK10 WILD-TYPE" "STK10 WILD-TYPE" "STK10 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"STK10 WILD-TYPE" "STK10 WILD-TYPE" "STK10 WILD-TYPE"   "STK10 MUTATED" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"STK10 WILD-TYPE" "STK10 WILD-TYPE" "STK10 WILD-TYPE" "STK10 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
  "STK10 MUTATED" "STK10 WILD-TYPE" "STK10 WILD-TYPE" "STK10 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"STK10 WILD-TYPE" "STK10 WILD-TYPE" "STK10 WILD-TYPE" "STK10 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"STK10 WILD-TYPE" "STK10 WILD-TYPE" "STK10 WILD-TYPE" "STK10 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"STK10 WILD-TYPE" "STK10 WILD-TYPE" "STK10 WILD-TYPE" "STK10 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
  "STK10 MUTATED" "STK10 WILD-TYPE" "STK10 WILD-TYPE" "STK10 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"STK10 WILD-TYPE" "STK10 WILD-TYPE" "STK10 WILD-TYPE"   "STK10 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"STK10 WILD-TYPE" "STK10 WILD-TYPE" "STK10 WILD-TYPE" "STK10 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"STK10 WILD-TYPE" "STK10 WILD-TYPE" "STK10 WILD-TYPE" "STK10 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"STK10 WILD-TYPE" "STK10 WILD-TYPE" "STK10 WILD-TYPE" "STK10 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"STK10 WILD-TYPE" "STK10 WILD-TYPE" "STK10 WILD-TYPE" "STK10 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"STK10 WILD-TYPE" "STK10 WILD-TYPE"   "STK10 MUTATED" "STK10 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"STK10 WILD-TYPE" "STK10 WILD-TYPE" "STK10 WILD-TYPE" "STK10 WILD-TYPE" 
     TCGA-US-A77J 
"STK10 WILD-TYPE" 
[1] "hr=" "2"  
D427V2, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  STK10 MUTATED          0        0         0         5         0        0
  STK10 WILD-TYPE        1        4        11        46         2        3
D427V3, multiclass
                 vv
clus              T1+T2 T3+T4
  STK10 MUTATED       0     5
  STK10 WILD-TYPE     6    61
D427V4, multiclass
       clus
vv      STK10 MUTATED STK10 WILD-TYPE
  T1+T2             0               6
  T3+T4             5              61
D427V5, binary
                 cls
clus               0  1
  STK10 MUTATED    0  5
  STK10 WILD-TYPE 17 49
[1] "tbl2"
                 cls
clus              [,1] [,2]
  STK10 MUTATED      0    5
  STK10 WILD-TYPE   17   49
   clus
vv  STK10 MUTATED STK10 WILD-TYPE
  0             0              17
  1             5              49
                 vv
clus              M0 M1 MX
  STK10 MUTATED    3  0  2
  STK10 WILD-TYPE 36  3 28
D427V6, multiclass
    clus
vv   STK10 MUTATED STK10 WILD-TYPE
  M0             3              36
  M1             0               3
  MX             2              28
D427V7, binary
                 cls
clus               0  1
  STK10 MUTATED    4  1
  STK10 WILD-TYPE 32 35
[1] "tbl2"
                 cls
clus              [,1] [,2]
  STK10 MUTATED      4    1
  STK10 WILD-TYPE   32   35
        clus
vv       STK10 MUTATED STK10 WILD-TYPE
  FEMALE             4              32
  MALE               1              35
                 vv
clus              PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  STK10 MUTATED                                     5
  STK10 WILD-TYPE                                  60
                 vv
clus              PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  STK10 MUTATED                                       0
  STK10 WILD-TYPE                                     4
                 vv
clus              PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  STK10 MUTATED                                                  0
  STK10 WILD-TYPE                                                2
D427V8, multiclass
                                                  clus
vv                                                 STK10 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                          5
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                        0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA             0
                                                  clus
vv                                                 STK10 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                           60
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                          4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA               2
D427V9, continuous
D427V10, continuous
                 vv
clus              R0 R1 RX
  STK10 MUTATED    2  3  0
  STK10 WILD-TYPE 40 21  2
D427V11, multiclass
    clus
vv   STK10 MUTATED STK10 WILD-TYPE
  R0             2              40
  R1             3              21
  RX             0               2
D427V12, continuous

Clustering(428) Variable = MTMR3 MUTATION ANALYSIS
D428V1, survival
                 sevent
clus2              0  1
  MTMR3 MUTATED    2  3
  MTMR3 WILD-TYPE 38 26
  MTMR3 MUTATED MTMR3 WILD-TYPE 
              5              64 
  MTMR3 MUTATED MTMR3 WILD-TYPE 
              3              26 
$`MTMR3 MUTATED`
TCGA-H6-8124 TCGA-HZ-8317 TCGA-IB-7646 TCGA-IB-7888 TCGA-IB-7890 
       12.89         0.53         4.77        43.79        19.66 

$`MTMR3 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P5 TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR 
        0.13        11.93        12.66         2.47         0.03         5.46 
TCGA-FZ-5920 TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7289 
        2.01        36.20        20.81         7.66        13.02         7.89 
TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 
        0.92         0.66         0.13         0.26        12.13        11.87 
TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 
        0.26         0.62         0.79         0.69         3.95         0.92 
TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK 
        0.16         2.99         0.76         0.95         6.38         1.51 
TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7651 TCGA-IB-7652 
       11.41        49.38        21.90        15.35        19.82        15.65 
TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7889 TCGA-IB-7891 TCGA-IB-7893 
       27.98         4.04         3.62        15.81        16.04         3.85 
TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ 
       15.98         0.56        17.16        10.82         9.86         7.20 
TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W TCGA-PZ-A5RE 
       15.12         0.26         1.35         4.18         3.62         8.12 
TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
       13.68        16.80        14.14        18.67 

  MTMR3 MUTATED MTMR3 WILD-TYPE 
           0.53            0.03 
  MTMR3 MUTATED MTMR3 WILD-TYPE 
          43.79           49.38 
  MTMR3 MUTATED MTMR3 WILD-TYPE 
          12.89            7.43 
[1] "0.5 - 43.8 (12.9)" "0.0 - 49.4 (7.4)" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"MTMR3 WILD-TYPE" "MTMR3 WILD-TYPE" "MTMR3 WILD-TYPE" "MTMR3 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"MTMR3 WILD-TYPE" "MTMR3 WILD-TYPE" "MTMR3 WILD-TYPE" "MTMR3 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"MTMR3 WILD-TYPE" "MTMR3 WILD-TYPE" "MTMR3 WILD-TYPE" "MTMR3 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"MTMR3 WILD-TYPE" "MTMR3 WILD-TYPE" "MTMR3 WILD-TYPE"   "MTMR3 MUTATED" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"MTMR3 WILD-TYPE" "MTMR3 WILD-TYPE" "MTMR3 WILD-TYPE" "MTMR3 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"MTMR3 WILD-TYPE" "MTMR3 WILD-TYPE" "MTMR3 WILD-TYPE" "MTMR3 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"MTMR3 WILD-TYPE" "MTMR3 WILD-TYPE" "MTMR3 WILD-TYPE" "MTMR3 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"MTMR3 WILD-TYPE" "MTMR3 WILD-TYPE" "MTMR3 WILD-TYPE"   "MTMR3 MUTATED" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"MTMR3 WILD-TYPE" "MTMR3 WILD-TYPE" "MTMR3 WILD-TYPE" "MTMR3 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"MTMR3 WILD-TYPE" "MTMR3 WILD-TYPE" "MTMR3 WILD-TYPE" "MTMR3 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
  "MTMR3 MUTATED" "MTMR3 WILD-TYPE" "MTMR3 WILD-TYPE" "MTMR3 WILD-TYPE" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"MTMR3 WILD-TYPE" "MTMR3 WILD-TYPE" "MTMR3 WILD-TYPE" "MTMR3 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
  "MTMR3 MUTATED" "MTMR3 WILD-TYPE"   "MTMR3 MUTATED" "MTMR3 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"MTMR3 WILD-TYPE" "MTMR3 WILD-TYPE" "MTMR3 WILD-TYPE" "MTMR3 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"MTMR3 WILD-TYPE" "MTMR3 WILD-TYPE" "MTMR3 WILD-TYPE" "MTMR3 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"MTMR3 WILD-TYPE" "MTMR3 WILD-TYPE" "MTMR3 WILD-TYPE" "MTMR3 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"MTMR3 WILD-TYPE" "MTMR3 WILD-TYPE" "MTMR3 WILD-TYPE" "MTMR3 WILD-TYPE" 
     TCGA-US-A77J 
"MTMR3 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"MTMR3 WILD-TYPE" "MTMR3 WILD-TYPE" "MTMR3 WILD-TYPE" "MTMR3 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"MTMR3 WILD-TYPE" "MTMR3 WILD-TYPE" "MTMR3 WILD-TYPE" "MTMR3 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"MTMR3 WILD-TYPE" "MTMR3 WILD-TYPE" "MTMR3 WILD-TYPE" "MTMR3 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"MTMR3 WILD-TYPE" "MTMR3 WILD-TYPE" "MTMR3 WILD-TYPE"   "MTMR3 MUTATED" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"MTMR3 WILD-TYPE" "MTMR3 WILD-TYPE" "MTMR3 WILD-TYPE" "MTMR3 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"MTMR3 WILD-TYPE" "MTMR3 WILD-TYPE" "MTMR3 WILD-TYPE" "MTMR3 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"MTMR3 WILD-TYPE" "MTMR3 WILD-TYPE" "MTMR3 WILD-TYPE" "MTMR3 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"MTMR3 WILD-TYPE" "MTMR3 WILD-TYPE" "MTMR3 WILD-TYPE"   "MTMR3 MUTATED" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"MTMR3 WILD-TYPE" "MTMR3 WILD-TYPE" "MTMR3 WILD-TYPE" "MTMR3 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"MTMR3 WILD-TYPE" "MTMR3 WILD-TYPE" "MTMR3 WILD-TYPE" "MTMR3 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
  "MTMR3 MUTATED" "MTMR3 WILD-TYPE" "MTMR3 WILD-TYPE" "MTMR3 WILD-TYPE" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"MTMR3 WILD-TYPE" "MTMR3 WILD-TYPE" "MTMR3 WILD-TYPE" "MTMR3 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
  "MTMR3 MUTATED" "MTMR3 WILD-TYPE"   "MTMR3 MUTATED" "MTMR3 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"MTMR3 WILD-TYPE" "MTMR3 WILD-TYPE" "MTMR3 WILD-TYPE" "MTMR3 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"MTMR3 WILD-TYPE" "MTMR3 WILD-TYPE" "MTMR3 WILD-TYPE" "MTMR3 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"MTMR3 WILD-TYPE" "MTMR3 WILD-TYPE" "MTMR3 WILD-TYPE" "MTMR3 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"MTMR3 WILD-TYPE" "MTMR3 WILD-TYPE" "MTMR3 WILD-TYPE" "MTMR3 WILD-TYPE" 
     TCGA-US-A77J 
"MTMR3 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"MTMR3 WILD-TYPE" "MTMR3 WILD-TYPE" "MTMR3 WILD-TYPE" "MTMR3 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"MTMR3 WILD-TYPE" "MTMR3 WILD-TYPE" "MTMR3 WILD-TYPE" "MTMR3 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"MTMR3 WILD-TYPE" "MTMR3 WILD-TYPE" "MTMR3 WILD-TYPE" "MTMR3 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"MTMR3 WILD-TYPE" "MTMR3 WILD-TYPE" "MTMR3 WILD-TYPE"   "MTMR3 MUTATED" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"MTMR3 WILD-TYPE" "MTMR3 WILD-TYPE" "MTMR3 WILD-TYPE" "MTMR3 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"MTMR3 WILD-TYPE" "MTMR3 WILD-TYPE" "MTMR3 WILD-TYPE" "MTMR3 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"MTMR3 WILD-TYPE" "MTMR3 WILD-TYPE" "MTMR3 WILD-TYPE" "MTMR3 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"MTMR3 WILD-TYPE" "MTMR3 WILD-TYPE" "MTMR3 WILD-TYPE"   "MTMR3 MUTATED" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"MTMR3 WILD-TYPE" "MTMR3 WILD-TYPE" "MTMR3 WILD-TYPE" "MTMR3 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"MTMR3 WILD-TYPE" "MTMR3 WILD-TYPE" "MTMR3 WILD-TYPE" "MTMR3 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
  "MTMR3 MUTATED" "MTMR3 WILD-TYPE" "MTMR3 WILD-TYPE" "MTMR3 WILD-TYPE" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"MTMR3 WILD-TYPE" "MTMR3 WILD-TYPE" "MTMR3 WILD-TYPE" "MTMR3 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
  "MTMR3 MUTATED" "MTMR3 WILD-TYPE"   "MTMR3 MUTATED" "MTMR3 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"MTMR3 WILD-TYPE" "MTMR3 WILD-TYPE" "MTMR3 WILD-TYPE" "MTMR3 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"MTMR3 WILD-TYPE" "MTMR3 WILD-TYPE" "MTMR3 WILD-TYPE" "MTMR3 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"MTMR3 WILD-TYPE" "MTMR3 WILD-TYPE" "MTMR3 WILD-TYPE" "MTMR3 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"MTMR3 WILD-TYPE" "MTMR3 WILD-TYPE" "MTMR3 WILD-TYPE" "MTMR3 WILD-TYPE" 
     TCGA-US-A77J 
"MTMR3 WILD-TYPE" 
[1] "hr=" "1.4"
D428V2, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  MTMR3 MUTATED          0        1         1         3         0        0
  MTMR3 WILD-TYPE        1        3        10        48         2        3
D428V3, multiclass
                 vv
clus              T1+T2 T3+T4
  MTMR3 MUTATED       1     4
  MTMR3 WILD-TYPE     5    62
D428V4, multiclass
       clus
vv      MTMR3 MUTATED MTMR3 WILD-TYPE
  T1+T2             1               5
  T3+T4             4              62
D428V5, binary
                 cls
clus               0  1
  MTMR3 MUTATED    2  3
  MTMR3 WILD-TYPE 15 51
[1] "tbl2"
                 cls
clus              [,1] [,2]
  MTMR3 MUTATED      2    3
  MTMR3 WILD-TYPE   15   51
   clus
vv  MTMR3 MUTATED MTMR3 WILD-TYPE
  0             2              15
  1             3              51
                 vv
clus              M0 M1 MX
  MTMR3 MUTATED    4  0  1
  MTMR3 WILD-TYPE 35  3 29
D428V6, multiclass
    clus
vv   MTMR3 MUTATED MTMR3 WILD-TYPE
  M0             4              35
  M1             0               3
  MX             1              29
D428V7, binary
                 cls
clus               0  1
  MTMR3 MUTATED    3  2
  MTMR3 WILD-TYPE 33 34
[1] "tbl2"
                 cls
clus              [,1] [,2]
  MTMR3 MUTATED      3    2
  MTMR3 WILD-TYPE   33   34
        clus
vv       MTMR3 MUTATED MTMR3 WILD-TYPE
  FEMALE             3              33
  MALE               2              34
                 vv
clus              PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  MTMR3 MUTATED                                     5
  MTMR3 WILD-TYPE                                  60
                 vv
clus              PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  MTMR3 MUTATED                                       0
  MTMR3 WILD-TYPE                                     4
                 vv
clus              PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  MTMR3 MUTATED                                                  0
  MTMR3 WILD-TYPE                                                2
D428V8, multiclass
                                                  clus
vv                                                 MTMR3 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                          5
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                        0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA             0
                                                  clus
vv                                                 MTMR3 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                           60
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                          4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA               2
D428V9, continuous
[1] "Remove cluster labels:" "MTMR3 MUTATED"         
clus
  MTMR3 MUTATED MTMR3 WILD-TYPE 
              1              21 
     TCGA-F2-6880      TCGA-FB-A4P5      TCGA-FB-A4P6      TCGA-FB-A5VM 
"MTMR3 WILD-TYPE" "MTMR3 WILD-TYPE" "MTMR3 WILD-TYPE" "MTMR3 WILD-TYPE" 
     TCGA-FB-A78T      TCGA-FB-A7DR      TCGA-H6-A45N      TCGA-H8-A6C1 
"MTMR3 WILD-TYPE" "MTMR3 WILD-TYPE" "MTMR3 WILD-TYPE" "MTMR3 WILD-TYPE" 
     TCGA-IB-7644      TCGA-IB-7649      TCGA-IB-7651      TCGA-IB-7885 
"MTMR3 WILD-TYPE" "MTMR3 WILD-TYPE" "MTMR3 WILD-TYPE" "MTMR3 WILD-TYPE" 
     TCGA-IB-7886      TCGA-IB-7887      TCGA-IB-7891      TCGA-IB-8126 
"MTMR3 WILD-TYPE" "MTMR3 WILD-TYPE" "MTMR3 WILD-TYPE" "MTMR3 WILD-TYPE" 
     TCGA-IB-8127      TCGA-IB-A5SS      TCGA-IB-A6UG      TCGA-LB-A7SX 
"MTMR3 WILD-TYPE" "MTMR3 WILD-TYPE" "MTMR3 WILD-TYPE" "MTMR3 WILD-TYPE" 
     TCGA-OE-A75W 
"MTMR3 WILD-TYPE" 
D428V10, continuous
[1] "Remove cluster labels:" "MTMR3 MUTATED"         
clus
  MTMR3 MUTATED MTMR3 WILD-TYPE 
              1              18 
     TCGA-FB-A4P5      TCGA-FB-A4P6      TCGA-FB-A5VM      TCGA-FB-A78T 
"MTMR3 WILD-TYPE" "MTMR3 WILD-TYPE" "MTMR3 WILD-TYPE" "MTMR3 WILD-TYPE" 
     TCGA-FB-A7DR      TCGA-H8-A6C1      TCGA-IB-7644      TCGA-IB-7649 
"MTMR3 WILD-TYPE" "MTMR3 WILD-TYPE" "MTMR3 WILD-TYPE" "MTMR3 WILD-TYPE" 
     TCGA-IB-7651      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7891 
"MTMR3 WILD-TYPE" "MTMR3 WILD-TYPE" "MTMR3 WILD-TYPE" "MTMR3 WILD-TYPE" 
     TCGA-IB-8126      TCGA-IB-8127      TCGA-IB-A5SS      TCGA-IB-A6UG 
"MTMR3 WILD-TYPE" "MTMR3 WILD-TYPE" "MTMR3 WILD-TYPE" "MTMR3 WILD-TYPE" 
     TCGA-LB-A7SX      TCGA-OE-A75W 
"MTMR3 WILD-TYPE" "MTMR3 WILD-TYPE" 
                 vv
clus              R0 R1 RX
  MTMR3 MUTATED    3  2  0
  MTMR3 WILD-TYPE 39 22  2
D428V11, multiclass
    clus
vv   MTMR3 MUTATED MTMR3 WILD-TYPE
  R0             3              39
  R1             2              22
  RX             0               2
D428V12, continuous

Clustering(429) Variable = CSF1R MUTATION ANALYSIS
D429V1, survival
                 sevent
clus2              0  1
  CSF1R MUTATED    2  2
  CSF1R WILD-TYPE 38 27
  CSF1R MUTATED CSF1R WILD-TYPE 
              4              65 
  CSF1R MUTATED CSF1R WILD-TYPE 
              2              27 
$`CSF1R MUTATED`
TCGA-HZ-8001 TCGA-HZ-8638 TCGA-IB-7651 TCGA-IB-7890 
        0.62         2.99        19.82        19.66 

$`CSF1R WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P5 TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR 
        0.13        11.93        12.66         2.47         0.03         5.46 
TCGA-FZ-5920 TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 
        2.01        36.20        20.81        12.89         7.66        13.02 
TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 
        7.89         0.92         0.66         0.13         0.26        12.13 
TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 
       11.87         0.26         0.79         0.69         3.95         0.92 
TCGA-HZ-8317 TCGA-HZ-8636 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK 
        0.53         0.16         0.76         0.95         6.38         1.51 
TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7652 
       11.41        49.38         4.77        21.90        15.35        15.65 
TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7891 
       27.98         4.04         3.62        43.79        15.81        16.04 
TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP 
        3.85        15.98         0.56        17.16        10.82         9.86 
TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W 
        7.20        15.12         0.26         1.35         4.18         3.62 
TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
        8.12        13.68        16.80        14.14        18.67 

  CSF1R MUTATED CSF1R WILD-TYPE 
           0.62            0.03 
  CSF1R MUTATED CSF1R WILD-TYPE 
          19.82           49.38 
  CSF1R MUTATED CSF1R WILD-TYPE 
         11.325           7.660 
[1] "0.6 - 19.8 (11.3)" "0.0 - 49.4 (7.7)" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"CSF1R WILD-TYPE" "CSF1R WILD-TYPE" "CSF1R WILD-TYPE" "CSF1R WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"CSF1R WILD-TYPE" "CSF1R WILD-TYPE" "CSF1R WILD-TYPE" "CSF1R WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"CSF1R WILD-TYPE" "CSF1R WILD-TYPE" "CSF1R WILD-TYPE" "CSF1R WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"CSF1R WILD-TYPE" "CSF1R WILD-TYPE" "CSF1R WILD-TYPE" "CSF1R WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"CSF1R WILD-TYPE" "CSF1R WILD-TYPE" "CSF1R WILD-TYPE" "CSF1R WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"CSF1R WILD-TYPE" "CSF1R WILD-TYPE" "CSF1R WILD-TYPE" "CSF1R WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"CSF1R WILD-TYPE" "CSF1R WILD-TYPE"   "CSF1R MUTATED" "CSF1R WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"CSF1R WILD-TYPE" "CSF1R WILD-TYPE" "CSF1R WILD-TYPE" "CSF1R WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"CSF1R WILD-TYPE"   "CSF1R MUTATED" "CSF1R WILD-TYPE" "CSF1R WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"CSF1R WILD-TYPE" "CSF1R WILD-TYPE" "CSF1R WILD-TYPE" "CSF1R WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"CSF1R WILD-TYPE" "CSF1R WILD-TYPE" "CSF1R WILD-TYPE"   "CSF1R MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"CSF1R WILD-TYPE" "CSF1R WILD-TYPE" "CSF1R WILD-TYPE" "CSF1R WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"CSF1R WILD-TYPE" "CSF1R WILD-TYPE"   "CSF1R MUTATED" "CSF1R WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"CSF1R WILD-TYPE" "CSF1R WILD-TYPE" "CSF1R WILD-TYPE" "CSF1R WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"CSF1R WILD-TYPE" "CSF1R WILD-TYPE" "CSF1R WILD-TYPE" "CSF1R WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"CSF1R WILD-TYPE" "CSF1R WILD-TYPE" "CSF1R WILD-TYPE" "CSF1R WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"CSF1R WILD-TYPE" "CSF1R WILD-TYPE" "CSF1R WILD-TYPE" "CSF1R WILD-TYPE" 
     TCGA-US-A77J 
"CSF1R WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"CSF1R WILD-TYPE" "CSF1R WILD-TYPE" "CSF1R WILD-TYPE" "CSF1R WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"CSF1R WILD-TYPE" "CSF1R WILD-TYPE" "CSF1R WILD-TYPE" "CSF1R WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"CSF1R WILD-TYPE" "CSF1R WILD-TYPE" "CSF1R WILD-TYPE" "CSF1R WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"CSF1R WILD-TYPE" "CSF1R WILD-TYPE" "CSF1R WILD-TYPE" "CSF1R WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"CSF1R WILD-TYPE" "CSF1R WILD-TYPE" "CSF1R WILD-TYPE" "CSF1R WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"CSF1R WILD-TYPE" "CSF1R WILD-TYPE" "CSF1R WILD-TYPE" "CSF1R WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"CSF1R WILD-TYPE" "CSF1R WILD-TYPE"   "CSF1R MUTATED" "CSF1R WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"CSF1R WILD-TYPE" "CSF1R WILD-TYPE" "CSF1R WILD-TYPE" "CSF1R WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"CSF1R WILD-TYPE"   "CSF1R MUTATED" "CSF1R WILD-TYPE" "CSF1R WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"CSF1R WILD-TYPE" "CSF1R WILD-TYPE" "CSF1R WILD-TYPE" "CSF1R WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"CSF1R WILD-TYPE" "CSF1R WILD-TYPE" "CSF1R WILD-TYPE"   "CSF1R MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"CSF1R WILD-TYPE" "CSF1R WILD-TYPE" "CSF1R WILD-TYPE" "CSF1R WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"CSF1R WILD-TYPE" "CSF1R WILD-TYPE"   "CSF1R MUTATED" "CSF1R WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"CSF1R WILD-TYPE" "CSF1R WILD-TYPE" "CSF1R WILD-TYPE" "CSF1R WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"CSF1R WILD-TYPE" "CSF1R WILD-TYPE" "CSF1R WILD-TYPE" "CSF1R WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"CSF1R WILD-TYPE" "CSF1R WILD-TYPE" "CSF1R WILD-TYPE" "CSF1R WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"CSF1R WILD-TYPE" "CSF1R WILD-TYPE" "CSF1R WILD-TYPE" "CSF1R WILD-TYPE" 
     TCGA-US-A77J 
"CSF1R WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"CSF1R WILD-TYPE" "CSF1R WILD-TYPE" "CSF1R WILD-TYPE" "CSF1R WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"CSF1R WILD-TYPE" "CSF1R WILD-TYPE" "CSF1R WILD-TYPE" "CSF1R WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"CSF1R WILD-TYPE" "CSF1R WILD-TYPE" "CSF1R WILD-TYPE" "CSF1R WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"CSF1R WILD-TYPE" "CSF1R WILD-TYPE" "CSF1R WILD-TYPE" "CSF1R WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"CSF1R WILD-TYPE" "CSF1R WILD-TYPE" "CSF1R WILD-TYPE" "CSF1R WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"CSF1R WILD-TYPE" "CSF1R WILD-TYPE" "CSF1R WILD-TYPE" "CSF1R WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"CSF1R WILD-TYPE" "CSF1R WILD-TYPE"   "CSF1R MUTATED" "CSF1R WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"CSF1R WILD-TYPE" "CSF1R WILD-TYPE" "CSF1R WILD-TYPE" "CSF1R WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"CSF1R WILD-TYPE"   "CSF1R MUTATED" "CSF1R WILD-TYPE" "CSF1R WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"CSF1R WILD-TYPE" "CSF1R WILD-TYPE" "CSF1R WILD-TYPE" "CSF1R WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"CSF1R WILD-TYPE" "CSF1R WILD-TYPE" "CSF1R WILD-TYPE"   "CSF1R MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"CSF1R WILD-TYPE" "CSF1R WILD-TYPE" "CSF1R WILD-TYPE" "CSF1R WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"CSF1R WILD-TYPE" "CSF1R WILD-TYPE"   "CSF1R MUTATED" "CSF1R WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"CSF1R WILD-TYPE" "CSF1R WILD-TYPE" "CSF1R WILD-TYPE" "CSF1R WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"CSF1R WILD-TYPE" "CSF1R WILD-TYPE" "CSF1R WILD-TYPE" "CSF1R WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"CSF1R WILD-TYPE" "CSF1R WILD-TYPE" "CSF1R WILD-TYPE" "CSF1R WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"CSF1R WILD-TYPE" "CSF1R WILD-TYPE" "CSF1R WILD-TYPE" "CSF1R WILD-TYPE" 
     TCGA-US-A77J 
"CSF1R WILD-TYPE" 
[1] "hr=" "1.1"
D429V2, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  CSF1R MUTATED          1        1         0         1         1        0
  CSF1R WILD-TYPE        0        3        11        50         1        3
D429V3, multiclass
                 vv
clus              T1+T2 T3+T4
  CSF1R MUTATED       2     2
  CSF1R WILD-TYPE     4    64
D429V4, multiclass
       clus
vv      CSF1R MUTATED CSF1R WILD-TYPE
  T1+T2             2               4
  T3+T4             2              64
D429V5, binary
                 cls
clus               0  1
  CSF1R MUTATED    3  1
  CSF1R WILD-TYPE 14 53
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CSF1R MUTATED      3    1
  CSF1R WILD-TYPE   14   53
   clus
vv  CSF1R MUTATED CSF1R WILD-TYPE
  0             3              14
  1             1              53
                 vv
clus              M0 M1 MX
  CSF1R MUTATED    2  0  2
  CSF1R WILD-TYPE 37  3 28
D429V6, multiclass
    clus
vv   CSF1R MUTATED CSF1R WILD-TYPE
  M0             2              37
  M1             0               3
  MX             2              28
D429V7, binary
                 cls
clus               0  1
  CSF1R MUTATED    2  2
  CSF1R WILD-TYPE 34 34
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CSF1R MUTATED      2    2
  CSF1R WILD-TYPE   34   34
        clus
vv       CSF1R MUTATED CSF1R WILD-TYPE
  FEMALE             2              34
  MALE               2              34
                 vv
clus              PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  CSF1R MUTATED                                     3
  CSF1R WILD-TYPE                                  62
                 vv
clus              PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  CSF1R MUTATED                                       0
  CSF1R WILD-TYPE                                     4
                 vv
clus              PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  CSF1R MUTATED                                                  1
  CSF1R WILD-TYPE                                                1
D429V8, multiclass
                                                  clus
vv                                                 CSF1R MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                          3
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                        0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA             1
                                                  clus
vv                                                 CSF1R WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                           62
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                          4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA               1
D429V9, continuous
[1] "Remove cluster labels:" "CSF1R MUTATED"         
clus
  CSF1R MUTATED CSF1R WILD-TYPE 
              1              21 
     TCGA-F2-6880      TCGA-FB-A4P5      TCGA-FB-A4P6      TCGA-FB-A5VM 
"CSF1R WILD-TYPE" "CSF1R WILD-TYPE" "CSF1R WILD-TYPE" "CSF1R WILD-TYPE" 
     TCGA-FB-A78T      TCGA-FB-A7DR      TCGA-H6-8124      TCGA-H6-A45N 
"CSF1R WILD-TYPE" "CSF1R WILD-TYPE" "CSF1R WILD-TYPE" "CSF1R WILD-TYPE" 
     TCGA-H8-A6C1      TCGA-IB-7644      TCGA-IB-7649      TCGA-IB-7885 
"CSF1R WILD-TYPE" "CSF1R WILD-TYPE" "CSF1R WILD-TYPE" "CSF1R WILD-TYPE" 
     TCGA-IB-7886      TCGA-IB-7887      TCGA-IB-7891      TCGA-IB-8126 
"CSF1R WILD-TYPE" "CSF1R WILD-TYPE" "CSF1R WILD-TYPE" "CSF1R WILD-TYPE" 
     TCGA-IB-8127      TCGA-IB-A5SS      TCGA-IB-A6UG      TCGA-LB-A7SX 
"CSF1R WILD-TYPE" "CSF1R WILD-TYPE" "CSF1R WILD-TYPE" "CSF1R WILD-TYPE" 
     TCGA-OE-A75W 
"CSF1R WILD-TYPE" 
D429V10, continuous
[1] "Remove cluster labels:" "CSF1R MUTATED"         
clus
  CSF1R MUTATED CSF1R WILD-TYPE 
              1              18 
     TCGA-FB-A4P5      TCGA-FB-A4P6      TCGA-FB-A5VM      TCGA-FB-A78T 
"CSF1R WILD-TYPE" "CSF1R WILD-TYPE" "CSF1R WILD-TYPE" "CSF1R WILD-TYPE" 
     TCGA-FB-A7DR      TCGA-H6-8124      TCGA-H8-A6C1      TCGA-IB-7644 
"CSF1R WILD-TYPE" "CSF1R WILD-TYPE" "CSF1R WILD-TYPE" "CSF1R WILD-TYPE" 
     TCGA-IB-7649      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7891 
"CSF1R WILD-TYPE" "CSF1R WILD-TYPE" "CSF1R WILD-TYPE" "CSF1R WILD-TYPE" 
     TCGA-IB-8126      TCGA-IB-8127      TCGA-IB-A5SS      TCGA-IB-A6UG 
"CSF1R WILD-TYPE" "CSF1R WILD-TYPE" "CSF1R WILD-TYPE" "CSF1R WILD-TYPE" 
     TCGA-LB-A7SX      TCGA-OE-A75W 
"CSF1R WILD-TYPE" "CSF1R WILD-TYPE" 
                 vv
clus              R0 R1 RX
  CSF1R MUTATED    4  0  0
  CSF1R WILD-TYPE 38 24  2
D429V11, multiclass
    clus
vv   CSF1R MUTATED CSF1R WILD-TYPE
  R0             4              38
  R1             0              24
  RX             0               2
D429V12, continuous

Clustering(430) Variable = RASSF2 MUTATION ANALYSIS
D430V1, survival
                  sevent
clus2               0  1
  RASSF2 MUTATED    3  0
  RASSF2 WILD-TYPE 37 29
  RASSF2 MUTATED RASSF2 WILD-TYPE 
               3               66 
  RASSF2 MUTATED RASSF2 WILD-TYPE 
               0               29 
$`RASSF2 MUTATED`
TCGA-HZ-8001 TCGA-HZ-8003 TCGA-IB-7652 
        0.62         0.69        15.65 

$`RASSF2 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P5 TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR 
        0.13        11.93        12.66         2.47         0.03         5.46 
TCGA-FZ-5920 TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 
        2.01        36.20        20.81        12.89         7.66        13.02 
TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 
        7.89         0.92         0.66         0.13         0.26        12.13 
TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8002 TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 
       11.87         0.26         0.79         3.95         0.92         0.53 
TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK 
        0.16         2.99         0.76         0.95         6.38         1.51 
TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7651 
       11.41        49.38         4.77        21.90        15.35        19.82 
TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 
       27.98         4.04         3.62        43.79        15.81        19.66 
TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO 
       16.04         3.85        15.98         0.56        17.16        10.82 
TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX 
        9.86         7.20        15.12         0.26         1.35         4.18 
TCGA-OE-A75W TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
        3.62         8.12        13.68        16.80        14.14        18.67 

  RASSF2 MUTATED RASSF2 WILD-TYPE 
            0.62             0.03 
  RASSF2 MUTATED RASSF2 WILD-TYPE 
           15.65            49.38 
  RASSF2 MUTATED RASSF2 WILD-TYPE 
           0.690            7.775 
[1] "0.6 - 15.7 (0.7)" "0.0 - 49.4 (7.8)"
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
"RASSF2 WILD-TYPE" "RASSF2 WILD-TYPE" "RASSF2 WILD-TYPE" "RASSF2 WILD-TYPE" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"RASSF2 WILD-TYPE" "RASSF2 WILD-TYPE" "RASSF2 WILD-TYPE" "RASSF2 WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
"RASSF2 WILD-TYPE" "RASSF2 WILD-TYPE" "RASSF2 WILD-TYPE" "RASSF2 WILD-TYPE" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"RASSF2 WILD-TYPE" "RASSF2 WILD-TYPE" "RASSF2 WILD-TYPE" "RASSF2 WILD-TYPE" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
"RASSF2 WILD-TYPE" "RASSF2 WILD-TYPE" "RASSF2 WILD-TYPE" "RASSF2 WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
"RASSF2 WILD-TYPE" "RASSF2 WILD-TYPE" "RASSF2 WILD-TYPE" "RASSF2 WILD-TYPE" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"RASSF2 WILD-TYPE" "RASSF2 WILD-TYPE"   "RASSF2 MUTATED" "RASSF2 WILD-TYPE" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
  "RASSF2 MUTATED" "RASSF2 WILD-TYPE" "RASSF2 WILD-TYPE" "RASSF2 WILD-TYPE" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
"RASSF2 WILD-TYPE" "RASSF2 WILD-TYPE" "RASSF2 WILD-TYPE" "RASSF2 WILD-TYPE" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
"RASSF2 WILD-TYPE" "RASSF2 WILD-TYPE" "RASSF2 WILD-TYPE" "RASSF2 WILD-TYPE" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
"RASSF2 WILD-TYPE" "RASSF2 WILD-TYPE" "RASSF2 WILD-TYPE" "RASSF2 WILD-TYPE" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
  "RASSF2 MUTATED" "RASSF2 WILD-TYPE" "RASSF2 WILD-TYPE" "RASSF2 WILD-TYPE" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
"RASSF2 WILD-TYPE" "RASSF2 WILD-TYPE" "RASSF2 WILD-TYPE" "RASSF2 WILD-TYPE" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
"RASSF2 WILD-TYPE" "RASSF2 WILD-TYPE" "RASSF2 WILD-TYPE" "RASSF2 WILD-TYPE" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"RASSF2 WILD-TYPE" "RASSF2 WILD-TYPE" "RASSF2 WILD-TYPE" "RASSF2 WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"RASSF2 WILD-TYPE" "RASSF2 WILD-TYPE" "RASSF2 WILD-TYPE" "RASSF2 WILD-TYPE" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
"RASSF2 WILD-TYPE" "RASSF2 WILD-TYPE" "RASSF2 WILD-TYPE" "RASSF2 WILD-TYPE" 
      TCGA-US-A77J 
"RASSF2 WILD-TYPE" 
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
"RASSF2 WILD-TYPE" "RASSF2 WILD-TYPE" "RASSF2 WILD-TYPE" "RASSF2 WILD-TYPE" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"RASSF2 WILD-TYPE" "RASSF2 WILD-TYPE" "RASSF2 WILD-TYPE" "RASSF2 WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
"RASSF2 WILD-TYPE" "RASSF2 WILD-TYPE" "RASSF2 WILD-TYPE" "RASSF2 WILD-TYPE" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"RASSF2 WILD-TYPE" "RASSF2 WILD-TYPE" "RASSF2 WILD-TYPE" "RASSF2 WILD-TYPE" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
"RASSF2 WILD-TYPE" "RASSF2 WILD-TYPE" "RASSF2 WILD-TYPE" "RASSF2 WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
"RASSF2 WILD-TYPE" "RASSF2 WILD-TYPE" "RASSF2 WILD-TYPE" "RASSF2 WILD-TYPE" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"RASSF2 WILD-TYPE" "RASSF2 WILD-TYPE"   "RASSF2 MUTATED" "RASSF2 WILD-TYPE" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
  "RASSF2 MUTATED" "RASSF2 WILD-TYPE" "RASSF2 WILD-TYPE" "RASSF2 WILD-TYPE" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
"RASSF2 WILD-TYPE" "RASSF2 WILD-TYPE" "RASSF2 WILD-TYPE" "RASSF2 WILD-TYPE" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
"RASSF2 WILD-TYPE" "RASSF2 WILD-TYPE" "RASSF2 WILD-TYPE" "RASSF2 WILD-TYPE" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
"RASSF2 WILD-TYPE" "RASSF2 WILD-TYPE" "RASSF2 WILD-TYPE" "RASSF2 WILD-TYPE" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
  "RASSF2 MUTATED" "RASSF2 WILD-TYPE" "RASSF2 WILD-TYPE" "RASSF2 WILD-TYPE" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
"RASSF2 WILD-TYPE" "RASSF2 WILD-TYPE" "RASSF2 WILD-TYPE" "RASSF2 WILD-TYPE" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
"RASSF2 WILD-TYPE" "RASSF2 WILD-TYPE" "RASSF2 WILD-TYPE" "RASSF2 WILD-TYPE" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"RASSF2 WILD-TYPE" "RASSF2 WILD-TYPE" "RASSF2 WILD-TYPE" "RASSF2 WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"RASSF2 WILD-TYPE" "RASSF2 WILD-TYPE" "RASSF2 WILD-TYPE" "RASSF2 WILD-TYPE" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
"RASSF2 WILD-TYPE" "RASSF2 WILD-TYPE" "RASSF2 WILD-TYPE" "RASSF2 WILD-TYPE" 
      TCGA-US-A77J 
"RASSF2 WILD-TYPE" 
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
"RASSF2 WILD-TYPE" "RASSF2 WILD-TYPE" "RASSF2 WILD-TYPE" "RASSF2 WILD-TYPE" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"RASSF2 WILD-TYPE" "RASSF2 WILD-TYPE" "RASSF2 WILD-TYPE" "RASSF2 WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
"RASSF2 WILD-TYPE" "RASSF2 WILD-TYPE" "RASSF2 WILD-TYPE" "RASSF2 WILD-TYPE" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"RASSF2 WILD-TYPE" "RASSF2 WILD-TYPE" "RASSF2 WILD-TYPE" "RASSF2 WILD-TYPE" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
"RASSF2 WILD-TYPE" "RASSF2 WILD-TYPE" "RASSF2 WILD-TYPE" "RASSF2 WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
"RASSF2 WILD-TYPE" "RASSF2 WILD-TYPE" "RASSF2 WILD-TYPE" "RASSF2 WILD-TYPE" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"RASSF2 WILD-TYPE" "RASSF2 WILD-TYPE"   "RASSF2 MUTATED" "RASSF2 WILD-TYPE" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
  "RASSF2 MUTATED" "RASSF2 WILD-TYPE" "RASSF2 WILD-TYPE" "RASSF2 WILD-TYPE" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
"RASSF2 WILD-TYPE" "RASSF2 WILD-TYPE" "RASSF2 WILD-TYPE" "RASSF2 WILD-TYPE" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
"RASSF2 WILD-TYPE" "RASSF2 WILD-TYPE" "RASSF2 WILD-TYPE" "RASSF2 WILD-TYPE" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
"RASSF2 WILD-TYPE" "RASSF2 WILD-TYPE" "RASSF2 WILD-TYPE" "RASSF2 WILD-TYPE" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
  "RASSF2 MUTATED" "RASSF2 WILD-TYPE" "RASSF2 WILD-TYPE" "RASSF2 WILD-TYPE" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
"RASSF2 WILD-TYPE" "RASSF2 WILD-TYPE" "RASSF2 WILD-TYPE" "RASSF2 WILD-TYPE" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
"RASSF2 WILD-TYPE" "RASSF2 WILD-TYPE" "RASSF2 WILD-TYPE" "RASSF2 WILD-TYPE" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"RASSF2 WILD-TYPE" "RASSF2 WILD-TYPE" "RASSF2 WILD-TYPE" "RASSF2 WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"RASSF2 WILD-TYPE" "RASSF2 WILD-TYPE" "RASSF2 WILD-TYPE" "RASSF2 WILD-TYPE" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
"RASSF2 WILD-TYPE" "RASSF2 WILD-TYPE" "RASSF2 WILD-TYPE" "RASSF2 WILD-TYPE" 
      TCGA-US-A77J 
"RASSF2 WILD-TYPE" 
[1] "hr="     "2.6e+07"
D430V2, continuous
                  vv
clus               STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  RASSF2 MUTATED          0        0         0         2         1        0
  RASSF2 WILD-TYPE        1        4        11        49         1        3
D430V3, multiclass
                  vv
clus               T1+T2 T3+T4
  RASSF2 MUTATED       0     3
  RASSF2 WILD-TYPE     6    63
D430V4, multiclass
       clus
vv      RASSF2 MUTATED RASSF2 WILD-TYPE
  T1+T2              0                6
  T3+T4              3               63
D430V5, binary
                  cls
clus                0  1
  RASSF2 MUTATED    1  2
  RASSF2 WILD-TYPE 16 52
[1] "tbl2"
                  cls
clus               [,1] [,2]
  RASSF2 MUTATED      1    2
  RASSF2 WILD-TYPE   16   52
   clus
vv  RASSF2 MUTATED RASSF2 WILD-TYPE
  0              1               16
  1              2               52
                  vv
clus               M0 M1 MX
  RASSF2 MUTATED    1  0  2
  RASSF2 WILD-TYPE 38  3 28
D430V6, multiclass
    clus
vv   RASSF2 MUTATED RASSF2 WILD-TYPE
  M0              1               38
  M1              0                3
  MX              2               28
D430V7, binary
                  cls
clus                0  1
  RASSF2 MUTATED    2  1
  RASSF2 WILD-TYPE 34 35
[1] "tbl2"
                  cls
clus               [,1] [,2]
  RASSF2 MUTATED      2    1
  RASSF2 WILD-TYPE   34   35
        clus
vv       RASSF2 MUTATED RASSF2 WILD-TYPE
  FEMALE              2               34
  MALE                1               35
                  vv
clus               PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  RASSF2 MUTATED                                     3
  RASSF2 WILD-TYPE                                  62
                  vv
clus               PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  RASSF2 MUTATED                                       0
  RASSF2 WILD-TYPE                                     4
                  vv
clus               PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  RASSF2 MUTATED                                                  0
  RASSF2 WILD-TYPE                                                2
D430V8, multiclass
                                                  clus
vv                                                 RASSF2 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                           3
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                         0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA              0
                                                  clus
vv                                                 RASSF2 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                            62
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                           4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                2
D430V9, continuous
D430V10, continuous
                  vv
clus               R0 R1 RX
  RASSF2 MUTATED    2  1  0
  RASSF2 WILD-TYPE 40 23  2
D430V11, multiclass
    clus
vv   RASSF2 MUTATED RASSF2 WILD-TYPE
  R0              2               40
  R1              1               23
  RX              0                2
D430V12, continuous

Clustering(431) Variable = SV2A MUTATION ANALYSIS
D431V1, survival
                sevent
clus2             0  1
  SV2A MUTATED    1  2
  SV2A WILD-TYPE 39 27
  SV2A MUTATED SV2A WILD-TYPE 
             3             66 
  SV2A MUTATED SV2A WILD-TYPE 
             2             27 
$`SV2A MUTATED`
TCGA-F2-7273 TCGA-H8-A6C1 TCGA-IB-7897 
       11.84        13.02        15.98 

$`SV2A WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H TCGA-FB-A4P5 
       10.98         9.70         7.10         5.03        19.27         0.13 
TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR TCGA-FZ-5920 
       11.93        12.66         2.47         0.03         5.46         2.01 
TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-HZ-7289 TCGA-HZ-7918 
       36.20        20.81        12.89         7.66         7.89         0.92 
TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 
        0.66         0.13         0.26        12.13        11.87         0.26 
TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 
        0.62         0.79         0.69         3.95         0.92         0.53 
TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK 
        0.16         2.99         0.76         0.95         6.38         1.51 
TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7651 
       11.41        49.38         4.77        21.90        15.35        19.82 
TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 
       15.65        27.98         4.04         3.62        43.79        15.81 
TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO 
       19.66        16.04         3.85         0.56        17.16        10.82 
TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX 
        9.86         7.20        15.12         0.26         1.35         4.18 
TCGA-OE-A75W TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
        3.62         8.12        13.68        16.80        14.14        18.67 

  SV2A MUTATED SV2A WILD-TYPE 
         11.84           0.03 
  SV2A MUTATED SV2A WILD-TYPE 
         15.98          49.38 
  SV2A MUTATED SV2A WILD-TYPE 
         13.02           7.15 
[1] "11.8 - 16.0 (13.0)" "0.0 - 49.4 (7.2)"  
    TCGA-F2-6879     TCGA-F2-6880     TCGA-F2-7273     TCGA-F2-7276 
"SV2A WILD-TYPE" "SV2A WILD-TYPE"   "SV2A MUTATED" "SV2A WILD-TYPE" 
    TCGA-F2-A44G     TCGA-F2-A44H     TCGA-FB-A4P5     TCGA-FB-A4P6 
"SV2A WILD-TYPE" "SV2A WILD-TYPE" "SV2A WILD-TYPE" "SV2A WILD-TYPE" 
    TCGA-FB-A545     TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-FB-A7DR 
"SV2A WILD-TYPE" "SV2A WILD-TYPE" "SV2A WILD-TYPE" "SV2A WILD-TYPE" 
    TCGA-FZ-5920     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-H6-8124 
"SV2A WILD-TYPE" "SV2A WILD-TYPE" "SV2A WILD-TYPE" "SV2A WILD-TYPE" 
    TCGA-H6-A45N     TCGA-H8-A6C1     TCGA-HZ-7289     TCGA-HZ-7918 
"SV2A WILD-TYPE"   "SV2A MUTATED" "SV2A WILD-TYPE" "SV2A WILD-TYPE" 
    TCGA-HZ-7919     TCGA-HZ-7922     TCGA-HZ-7923     TCGA-HZ-7924 
"SV2A WILD-TYPE" "SV2A WILD-TYPE" "SV2A WILD-TYPE" "SV2A WILD-TYPE" 
    TCGA-HZ-7925     TCGA-HZ-7926     TCGA-HZ-8001     TCGA-HZ-8002 
"SV2A WILD-TYPE" "SV2A WILD-TYPE" "SV2A WILD-TYPE" "SV2A WILD-TYPE" 
    TCGA-HZ-8003     TCGA-HZ-8005     TCGA-HZ-8315     TCGA-HZ-8317 
"SV2A WILD-TYPE" "SV2A WILD-TYPE" "SV2A WILD-TYPE" "SV2A WILD-TYPE" 
    TCGA-HZ-8636     TCGA-HZ-8638     TCGA-HZ-A49G     TCGA-HZ-A49H 
"SV2A WILD-TYPE" "SV2A WILD-TYPE" "SV2A WILD-TYPE" "SV2A WILD-TYPE" 
    TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-IB-7644     TCGA-IB-7645 
"SV2A WILD-TYPE" "SV2A WILD-TYPE" "SV2A WILD-TYPE" "SV2A WILD-TYPE" 
    TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7651 
"SV2A WILD-TYPE" "SV2A WILD-TYPE" "SV2A WILD-TYPE" "SV2A WILD-TYPE" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887 
"SV2A WILD-TYPE" "SV2A WILD-TYPE" "SV2A WILD-TYPE" "SV2A WILD-TYPE" 
    TCGA-IB-7888     TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891 
"SV2A WILD-TYPE" "SV2A WILD-TYPE" "SV2A WILD-TYPE" "SV2A WILD-TYPE" 
    TCGA-IB-7893     TCGA-IB-7897     TCGA-IB-8126     TCGA-IB-8127 
"SV2A WILD-TYPE"   "SV2A MUTATED" "SV2A WILD-TYPE" "SV2A WILD-TYPE" 
    TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS 
"SV2A WILD-TYPE" "SV2A WILD-TYPE" "SV2A WILD-TYPE" "SV2A WILD-TYPE" 
    TCGA-IB-A5ST     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
"SV2A WILD-TYPE" "SV2A WILD-TYPE" "SV2A WILD-TYPE" "SV2A WILD-TYPE" 
    TCGA-PZ-A5RE     TCGA-Q3-A5QY     TCGA-US-A779     TCGA-US-A77E 
"SV2A WILD-TYPE" "SV2A WILD-TYPE" "SV2A WILD-TYPE" "SV2A WILD-TYPE" 
    TCGA-US-A77J 
"SV2A WILD-TYPE" 
    TCGA-F2-6879     TCGA-F2-6880     TCGA-F2-7273     TCGA-F2-7276 
"SV2A WILD-TYPE" "SV2A WILD-TYPE"   "SV2A MUTATED" "SV2A WILD-TYPE" 
    TCGA-F2-A44G     TCGA-F2-A44H     TCGA-FB-A4P5     TCGA-FB-A4P6 
"SV2A WILD-TYPE" "SV2A WILD-TYPE" "SV2A WILD-TYPE" "SV2A WILD-TYPE" 
    TCGA-FB-A545     TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-FB-A7DR 
"SV2A WILD-TYPE" "SV2A WILD-TYPE" "SV2A WILD-TYPE" "SV2A WILD-TYPE" 
    TCGA-FZ-5920     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-H6-8124 
"SV2A WILD-TYPE" "SV2A WILD-TYPE" "SV2A WILD-TYPE" "SV2A WILD-TYPE" 
    TCGA-H6-A45N     TCGA-H8-A6C1     TCGA-HZ-7289     TCGA-HZ-7918 
"SV2A WILD-TYPE"   "SV2A MUTATED" "SV2A WILD-TYPE" "SV2A WILD-TYPE" 
    TCGA-HZ-7919     TCGA-HZ-7922     TCGA-HZ-7923     TCGA-HZ-7924 
"SV2A WILD-TYPE" "SV2A WILD-TYPE" "SV2A WILD-TYPE" "SV2A WILD-TYPE" 
    TCGA-HZ-7925     TCGA-HZ-7926     TCGA-HZ-8001     TCGA-HZ-8002 
"SV2A WILD-TYPE" "SV2A WILD-TYPE" "SV2A WILD-TYPE" "SV2A WILD-TYPE" 
    TCGA-HZ-8003     TCGA-HZ-8005     TCGA-HZ-8315     TCGA-HZ-8317 
"SV2A WILD-TYPE" "SV2A WILD-TYPE" "SV2A WILD-TYPE" "SV2A WILD-TYPE" 
    TCGA-HZ-8636     TCGA-HZ-8638     TCGA-HZ-A49G     TCGA-HZ-A49H 
"SV2A WILD-TYPE" "SV2A WILD-TYPE" "SV2A WILD-TYPE" "SV2A WILD-TYPE" 
    TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-IB-7644     TCGA-IB-7645 
"SV2A WILD-TYPE" "SV2A WILD-TYPE" "SV2A WILD-TYPE" "SV2A WILD-TYPE" 
    TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7651 
"SV2A WILD-TYPE" "SV2A WILD-TYPE" "SV2A WILD-TYPE" "SV2A WILD-TYPE" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887 
"SV2A WILD-TYPE" "SV2A WILD-TYPE" "SV2A WILD-TYPE" "SV2A WILD-TYPE" 
    TCGA-IB-7888     TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891 
"SV2A WILD-TYPE" "SV2A WILD-TYPE" "SV2A WILD-TYPE" "SV2A WILD-TYPE" 
    TCGA-IB-7893     TCGA-IB-7897     TCGA-IB-8126     TCGA-IB-8127 
"SV2A WILD-TYPE"   "SV2A MUTATED" "SV2A WILD-TYPE" "SV2A WILD-TYPE" 
    TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS 
"SV2A WILD-TYPE" "SV2A WILD-TYPE" "SV2A WILD-TYPE" "SV2A WILD-TYPE" 
    TCGA-IB-A5ST     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
"SV2A WILD-TYPE" "SV2A WILD-TYPE" "SV2A WILD-TYPE" "SV2A WILD-TYPE" 
    TCGA-PZ-A5RE     TCGA-Q3-A5QY     TCGA-US-A779     TCGA-US-A77E 
"SV2A WILD-TYPE" "SV2A WILD-TYPE" "SV2A WILD-TYPE" "SV2A WILD-TYPE" 
    TCGA-US-A77J 
"SV2A WILD-TYPE" 
    TCGA-F2-6879     TCGA-F2-6880     TCGA-F2-7273     TCGA-F2-7276 
"SV2A WILD-TYPE" "SV2A WILD-TYPE"   "SV2A MUTATED" "SV2A WILD-TYPE" 
    TCGA-F2-A44G     TCGA-F2-A44H     TCGA-FB-A4P5     TCGA-FB-A4P6 
"SV2A WILD-TYPE" "SV2A WILD-TYPE" "SV2A WILD-TYPE" "SV2A WILD-TYPE" 
    TCGA-FB-A545     TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-FB-A7DR 
"SV2A WILD-TYPE" "SV2A WILD-TYPE" "SV2A WILD-TYPE" "SV2A WILD-TYPE" 
    TCGA-FZ-5920     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-H6-8124 
"SV2A WILD-TYPE" "SV2A WILD-TYPE" "SV2A WILD-TYPE" "SV2A WILD-TYPE" 
    TCGA-H6-A45N     TCGA-H8-A6C1     TCGA-HZ-7289     TCGA-HZ-7918 
"SV2A WILD-TYPE"   "SV2A MUTATED" "SV2A WILD-TYPE" "SV2A WILD-TYPE" 
    TCGA-HZ-7919     TCGA-HZ-7922     TCGA-HZ-7923     TCGA-HZ-7924 
"SV2A WILD-TYPE" "SV2A WILD-TYPE" "SV2A WILD-TYPE" "SV2A WILD-TYPE" 
    TCGA-HZ-7925     TCGA-HZ-7926     TCGA-HZ-8001     TCGA-HZ-8002 
"SV2A WILD-TYPE" "SV2A WILD-TYPE" "SV2A WILD-TYPE" "SV2A WILD-TYPE" 
    TCGA-HZ-8003     TCGA-HZ-8005     TCGA-HZ-8315     TCGA-HZ-8317 
"SV2A WILD-TYPE" "SV2A WILD-TYPE" "SV2A WILD-TYPE" "SV2A WILD-TYPE" 
    TCGA-HZ-8636     TCGA-HZ-8638     TCGA-HZ-A49G     TCGA-HZ-A49H 
"SV2A WILD-TYPE" "SV2A WILD-TYPE" "SV2A WILD-TYPE" "SV2A WILD-TYPE" 
    TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-IB-7644     TCGA-IB-7645 
"SV2A WILD-TYPE" "SV2A WILD-TYPE" "SV2A WILD-TYPE" "SV2A WILD-TYPE" 
    TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7651 
"SV2A WILD-TYPE" "SV2A WILD-TYPE" "SV2A WILD-TYPE" "SV2A WILD-TYPE" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887 
"SV2A WILD-TYPE" "SV2A WILD-TYPE" "SV2A WILD-TYPE" "SV2A WILD-TYPE" 
    TCGA-IB-7888     TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891 
"SV2A WILD-TYPE" "SV2A WILD-TYPE" "SV2A WILD-TYPE" "SV2A WILD-TYPE" 
    TCGA-IB-7893     TCGA-IB-7897     TCGA-IB-8126     TCGA-IB-8127 
"SV2A WILD-TYPE"   "SV2A MUTATED" "SV2A WILD-TYPE" "SV2A WILD-TYPE" 
    TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS 
"SV2A WILD-TYPE" "SV2A WILD-TYPE" "SV2A WILD-TYPE" "SV2A WILD-TYPE" 
    TCGA-IB-A5ST     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
"SV2A WILD-TYPE" "SV2A WILD-TYPE" "SV2A WILD-TYPE" "SV2A WILD-TYPE" 
    TCGA-PZ-A5RE     TCGA-Q3-A5QY     TCGA-US-A779     TCGA-US-A77E 
"SV2A WILD-TYPE" "SV2A WILD-TYPE" "SV2A WILD-TYPE" "SV2A WILD-TYPE" 
    TCGA-US-A77J 
"SV2A WILD-TYPE" 
[1] "hr=" "1.4"
D431V2, continuous
                vv
clus             STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  SV2A MUTATED          0        0         1         2         0        0
  SV2A WILD-TYPE        1        4        10        49         2        3
D431V3, multiclass
                vv
clus             T1+T2 T3+T4
  SV2A MUTATED       0     3
  SV2A WILD-TYPE     6    63
D431V4, multiclass
       clus
vv      SV2A MUTATED SV2A WILD-TYPE
  T1+T2            0              6
  T3+T4            3             63
D431V5, binary
                cls
clus              0  1
  SV2A MUTATED    1  2
  SV2A WILD-TYPE 16 52
[1] "tbl2"
                cls
clus             [,1] [,2]
  SV2A MUTATED      1    2
  SV2A WILD-TYPE   16   52
   clus
vv  SV2A MUTATED SV2A WILD-TYPE
  0            1             16
  1            2             52
                vv
clus             M0 M1 MX
  SV2A MUTATED    2  0  1
  SV2A WILD-TYPE 37  3 29
D431V6, multiclass
    clus
vv   SV2A MUTATED SV2A WILD-TYPE
  M0            2             37
  M1            0              3
  MX            1             29
D431V7, binary
                cls
clus              0  1
  SV2A MUTATED    1  2
  SV2A WILD-TYPE 35 34
[1] "tbl2"
                cls
clus             [,1] [,2]
  SV2A MUTATED      1    2
  SV2A WILD-TYPE   35   34
        clus
vv       SV2A MUTATED SV2A WILD-TYPE
  FEMALE            1             35
  MALE              2             34
                vv
clus             PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  SV2A MUTATED                                     2
  SV2A WILD-TYPE                                  63
                vv
clus             PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  SV2A MUTATED                                       1
  SV2A WILD-TYPE                                     3
                vv
clus             PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  SV2A MUTATED                                                  0
  SV2A WILD-TYPE                                                2
D431V8, multiclass
                                                  clus
vv                                                 SV2A MUTATED SV2A WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                         2             63
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                       1              3
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA            0              2
D431V9, continuous
[1] "Remove cluster labels:" "SV2A MUTATED"          
clus
  SV2A MUTATED SV2A WILD-TYPE 
             1             21 
    TCGA-F2-6880     TCGA-FB-A4P5     TCGA-FB-A4P6     TCGA-FB-A5VM 
"SV2A WILD-TYPE" "SV2A WILD-TYPE" "SV2A WILD-TYPE" "SV2A WILD-TYPE" 
    TCGA-FB-A78T     TCGA-FB-A7DR     TCGA-H6-8124     TCGA-H6-A45N 
"SV2A WILD-TYPE" "SV2A WILD-TYPE" "SV2A WILD-TYPE" "SV2A WILD-TYPE" 
    TCGA-IB-7644     TCGA-IB-7649     TCGA-IB-7651     TCGA-IB-7885 
"SV2A WILD-TYPE" "SV2A WILD-TYPE" "SV2A WILD-TYPE" "SV2A WILD-TYPE" 
    TCGA-IB-7886     TCGA-IB-7887     TCGA-IB-7891     TCGA-IB-8126 
"SV2A WILD-TYPE" "SV2A WILD-TYPE" "SV2A WILD-TYPE" "SV2A WILD-TYPE" 
    TCGA-IB-8127     TCGA-IB-A5SS     TCGA-IB-A6UG     TCGA-LB-A7SX 
"SV2A WILD-TYPE" "SV2A WILD-TYPE" "SV2A WILD-TYPE" "SV2A WILD-TYPE" 
    TCGA-OE-A75W 
"SV2A WILD-TYPE" 
D431V10, continuous
[1] "Remove cluster labels:" "SV2A MUTATED"          
clus
  SV2A MUTATED SV2A WILD-TYPE 
             1             18 
    TCGA-FB-A4P5     TCGA-FB-A4P6     TCGA-FB-A5VM     TCGA-FB-A78T 
"SV2A WILD-TYPE" "SV2A WILD-TYPE" "SV2A WILD-TYPE" "SV2A WILD-TYPE" 
    TCGA-FB-A7DR     TCGA-H6-8124     TCGA-IB-7644     TCGA-IB-7649 
"SV2A WILD-TYPE" "SV2A WILD-TYPE" "SV2A WILD-TYPE" "SV2A WILD-TYPE" 
    TCGA-IB-7651     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7891 
"SV2A WILD-TYPE" "SV2A WILD-TYPE" "SV2A WILD-TYPE" "SV2A WILD-TYPE" 
    TCGA-IB-8126     TCGA-IB-8127     TCGA-IB-A5SS     TCGA-IB-A6UG 
"SV2A WILD-TYPE" "SV2A WILD-TYPE" "SV2A WILD-TYPE" "SV2A WILD-TYPE" 
    TCGA-LB-A7SX     TCGA-OE-A75W 
"SV2A WILD-TYPE" "SV2A WILD-TYPE" 
                vv
clus             R0 R1 RX
  SV2A MUTATED    2  1  0
  SV2A WILD-TYPE 40 23  2
D431V11, multiclass
    clus
vv   SV2A MUTATED SV2A WILD-TYPE
  R0            2             40
  R1            1             23
  RX            0              2
D431V12, continuous

Clustering(432) Variable = GNAS MUTATION ANALYSIS
D432V1, survival
                sevent
clus2             0  1
  GNAS MUTATED    3  4
  GNAS WILD-TYPE 37 25
  GNAS MUTATED GNAS WILD-TYPE 
             7             62 
  GNAS MUTATED GNAS WILD-TYPE 
             4             25 
$`GNAS MUTATED`
TCGA-F2-7276 TCGA-F2-A44G TCGA-HZ-7289 TCGA-HZ-8317 TCGA-IB-7651 TCGA-IB-A5SO 
        7.10         5.03         7.89         0.53        19.82        10.82 
TCGA-US-A77E 
       14.14 

$`GNAS WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-A44H TCGA-FB-A4P5 TCGA-FB-A4P6 
       10.98         9.70        11.84        19.27         0.13        11.93 
TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR TCGA-FZ-5920 TCGA-FZ-5922 
       12.66         2.47         0.03         5.46         2.01        36.20 
TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7918 TCGA-HZ-7919 
       20.81        12.89         7.66        13.02         0.92         0.66 
TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8001 
        0.13         0.26        12.13        11.87         0.26         0.62 
TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8636 TCGA-HZ-8638 
        0.79         0.69         3.95         0.92         0.16         2.99 
TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7645 
        0.76         0.95         6.38         1.51        11.41        49.38 
TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7886 
        4.77        21.90        15.35        15.65        27.98         4.04 
TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-7893 
        3.62        43.79        15.81        19.66        16.04         3.85 
TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS 
       15.98         0.56        17.16         9.86         7.20        15.12 
TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W TCGA-PZ-A5RE TCGA-Q3-A5QY 
        0.26         1.35         4.18         3.62         8.12        13.68 
TCGA-US-A779 TCGA-US-A77J 
       16.80        18.67 

  GNAS MUTATED GNAS WILD-TYPE 
          0.53           0.03 
  GNAS MUTATED GNAS WILD-TYPE 
         19.82          49.38 
  GNAS MUTATED GNAS WILD-TYPE 
          7.89           7.43 
[1] "0.5 - 19.8 (7.9)" "0.0 - 49.4 (7.4)"
    TCGA-F2-6879     TCGA-F2-6880     TCGA-F2-7273     TCGA-F2-7276 
"GNAS WILD-TYPE" "GNAS WILD-TYPE" "GNAS WILD-TYPE"   "GNAS MUTATED" 
    TCGA-F2-A44G     TCGA-F2-A44H     TCGA-FB-A4P5     TCGA-FB-A4P6 
  "GNAS MUTATED" "GNAS WILD-TYPE" "GNAS WILD-TYPE" "GNAS WILD-TYPE" 
    TCGA-FB-A545     TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-FB-A7DR 
"GNAS WILD-TYPE" "GNAS WILD-TYPE" "GNAS WILD-TYPE" "GNAS WILD-TYPE" 
    TCGA-FZ-5920     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-H6-8124 
"GNAS WILD-TYPE" "GNAS WILD-TYPE" "GNAS WILD-TYPE" "GNAS WILD-TYPE" 
    TCGA-H6-A45N     TCGA-H8-A6C1     TCGA-HZ-7289     TCGA-HZ-7918 
"GNAS WILD-TYPE" "GNAS WILD-TYPE"   "GNAS MUTATED" "GNAS WILD-TYPE" 
    TCGA-HZ-7919     TCGA-HZ-7922     TCGA-HZ-7923     TCGA-HZ-7924 
"GNAS WILD-TYPE" "GNAS WILD-TYPE" "GNAS WILD-TYPE" "GNAS WILD-TYPE" 
    TCGA-HZ-7925     TCGA-HZ-7926     TCGA-HZ-8001     TCGA-HZ-8002 
"GNAS WILD-TYPE" "GNAS WILD-TYPE" "GNAS WILD-TYPE" "GNAS WILD-TYPE" 
    TCGA-HZ-8003     TCGA-HZ-8005     TCGA-HZ-8315     TCGA-HZ-8317 
"GNAS WILD-TYPE" "GNAS WILD-TYPE" "GNAS WILD-TYPE"   "GNAS MUTATED" 
    TCGA-HZ-8636     TCGA-HZ-8638     TCGA-HZ-A49G     TCGA-HZ-A49H 
"GNAS WILD-TYPE" "GNAS WILD-TYPE" "GNAS WILD-TYPE" "GNAS WILD-TYPE" 
    TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-IB-7644     TCGA-IB-7645 
"GNAS WILD-TYPE" "GNAS WILD-TYPE" "GNAS WILD-TYPE" "GNAS WILD-TYPE" 
    TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7651 
"GNAS WILD-TYPE" "GNAS WILD-TYPE" "GNAS WILD-TYPE"   "GNAS MUTATED" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887 
"GNAS WILD-TYPE" "GNAS WILD-TYPE" "GNAS WILD-TYPE" "GNAS WILD-TYPE" 
    TCGA-IB-7888     TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891 
"GNAS WILD-TYPE" "GNAS WILD-TYPE" "GNAS WILD-TYPE" "GNAS WILD-TYPE" 
    TCGA-IB-7893     TCGA-IB-7897     TCGA-IB-8126     TCGA-IB-8127 
"GNAS WILD-TYPE" "GNAS WILD-TYPE" "GNAS WILD-TYPE" "GNAS WILD-TYPE" 
    TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS 
  "GNAS MUTATED" "GNAS WILD-TYPE" "GNAS WILD-TYPE" "GNAS WILD-TYPE" 
    TCGA-IB-A5ST     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
"GNAS WILD-TYPE" "GNAS WILD-TYPE" "GNAS WILD-TYPE" "GNAS WILD-TYPE" 
    TCGA-PZ-A5RE     TCGA-Q3-A5QY     TCGA-US-A779     TCGA-US-A77E 
"GNAS WILD-TYPE" "GNAS WILD-TYPE" "GNAS WILD-TYPE"   "GNAS MUTATED" 
    TCGA-US-A77J 
"GNAS WILD-TYPE" 
    TCGA-F2-6879     TCGA-F2-6880     TCGA-F2-7273     TCGA-F2-7276 
"GNAS WILD-TYPE" "GNAS WILD-TYPE" "GNAS WILD-TYPE"   "GNAS MUTATED" 
    TCGA-F2-A44G     TCGA-F2-A44H     TCGA-FB-A4P5     TCGA-FB-A4P6 
  "GNAS MUTATED" "GNAS WILD-TYPE" "GNAS WILD-TYPE" "GNAS WILD-TYPE" 
    TCGA-FB-A545     TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-FB-A7DR 
"GNAS WILD-TYPE" "GNAS WILD-TYPE" "GNAS WILD-TYPE" "GNAS WILD-TYPE" 
    TCGA-FZ-5920     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-H6-8124 
"GNAS WILD-TYPE" "GNAS WILD-TYPE" "GNAS WILD-TYPE" "GNAS WILD-TYPE" 
    TCGA-H6-A45N     TCGA-H8-A6C1     TCGA-HZ-7289     TCGA-HZ-7918 
"GNAS WILD-TYPE" "GNAS WILD-TYPE"   "GNAS MUTATED" "GNAS WILD-TYPE" 
    TCGA-HZ-7919     TCGA-HZ-7922     TCGA-HZ-7923     TCGA-HZ-7924 
"GNAS WILD-TYPE" "GNAS WILD-TYPE" "GNAS WILD-TYPE" "GNAS WILD-TYPE" 
    TCGA-HZ-7925     TCGA-HZ-7926     TCGA-HZ-8001     TCGA-HZ-8002 
"GNAS WILD-TYPE" "GNAS WILD-TYPE" "GNAS WILD-TYPE" "GNAS WILD-TYPE" 
    TCGA-HZ-8003     TCGA-HZ-8005     TCGA-HZ-8315     TCGA-HZ-8317 
"GNAS WILD-TYPE" "GNAS WILD-TYPE" "GNAS WILD-TYPE"   "GNAS MUTATED" 
    TCGA-HZ-8636     TCGA-HZ-8638     TCGA-HZ-A49G     TCGA-HZ-A49H 
"GNAS WILD-TYPE" "GNAS WILD-TYPE" "GNAS WILD-TYPE" "GNAS WILD-TYPE" 
    TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-IB-7644     TCGA-IB-7645 
"GNAS WILD-TYPE" "GNAS WILD-TYPE" "GNAS WILD-TYPE" "GNAS WILD-TYPE" 
    TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7651 
"GNAS WILD-TYPE" "GNAS WILD-TYPE" "GNAS WILD-TYPE"   "GNAS MUTATED" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887 
"GNAS WILD-TYPE" "GNAS WILD-TYPE" "GNAS WILD-TYPE" "GNAS WILD-TYPE" 
    TCGA-IB-7888     TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891 
"GNAS WILD-TYPE" "GNAS WILD-TYPE" "GNAS WILD-TYPE" "GNAS WILD-TYPE" 
    TCGA-IB-7893     TCGA-IB-7897     TCGA-IB-8126     TCGA-IB-8127 
"GNAS WILD-TYPE" "GNAS WILD-TYPE" "GNAS WILD-TYPE" "GNAS WILD-TYPE" 
    TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS 
  "GNAS MUTATED" "GNAS WILD-TYPE" "GNAS WILD-TYPE" "GNAS WILD-TYPE" 
    TCGA-IB-A5ST     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
"GNAS WILD-TYPE" "GNAS WILD-TYPE" "GNAS WILD-TYPE" "GNAS WILD-TYPE" 
    TCGA-PZ-A5RE     TCGA-Q3-A5QY     TCGA-US-A779     TCGA-US-A77E 
"GNAS WILD-TYPE" "GNAS WILD-TYPE" "GNAS WILD-TYPE"   "GNAS MUTATED" 
    TCGA-US-A77J 
"GNAS WILD-TYPE" 
    TCGA-F2-6879     TCGA-F2-6880     TCGA-F2-7273     TCGA-F2-7276 
"GNAS WILD-TYPE" "GNAS WILD-TYPE" "GNAS WILD-TYPE"   "GNAS MUTATED" 
    TCGA-F2-A44G     TCGA-F2-A44H     TCGA-FB-A4P5     TCGA-FB-A4P6 
  "GNAS MUTATED" "GNAS WILD-TYPE" "GNAS WILD-TYPE" "GNAS WILD-TYPE" 
    TCGA-FB-A545     TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-FB-A7DR 
"GNAS WILD-TYPE" "GNAS WILD-TYPE" "GNAS WILD-TYPE" "GNAS WILD-TYPE" 
    TCGA-FZ-5920     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-H6-8124 
"GNAS WILD-TYPE" "GNAS WILD-TYPE" "GNAS WILD-TYPE" "GNAS WILD-TYPE" 
    TCGA-H6-A45N     TCGA-H8-A6C1     TCGA-HZ-7289     TCGA-HZ-7918 
"GNAS WILD-TYPE" "GNAS WILD-TYPE"   "GNAS MUTATED" "GNAS WILD-TYPE" 
    TCGA-HZ-7919     TCGA-HZ-7922     TCGA-HZ-7923     TCGA-HZ-7924 
"GNAS WILD-TYPE" "GNAS WILD-TYPE" "GNAS WILD-TYPE" "GNAS WILD-TYPE" 
    TCGA-HZ-7925     TCGA-HZ-7926     TCGA-HZ-8001     TCGA-HZ-8002 
"GNAS WILD-TYPE" "GNAS WILD-TYPE" "GNAS WILD-TYPE" "GNAS WILD-TYPE" 
    TCGA-HZ-8003     TCGA-HZ-8005     TCGA-HZ-8315     TCGA-HZ-8317 
"GNAS WILD-TYPE" "GNAS WILD-TYPE" "GNAS WILD-TYPE"   "GNAS MUTATED" 
    TCGA-HZ-8636     TCGA-HZ-8638     TCGA-HZ-A49G     TCGA-HZ-A49H 
"GNAS WILD-TYPE" "GNAS WILD-TYPE" "GNAS WILD-TYPE" "GNAS WILD-TYPE" 
    TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-IB-7644     TCGA-IB-7645 
"GNAS WILD-TYPE" "GNAS WILD-TYPE" "GNAS WILD-TYPE" "GNAS WILD-TYPE" 
    TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7651 
"GNAS WILD-TYPE" "GNAS WILD-TYPE" "GNAS WILD-TYPE"   "GNAS MUTATED" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887 
"GNAS WILD-TYPE" "GNAS WILD-TYPE" "GNAS WILD-TYPE" "GNAS WILD-TYPE" 
    TCGA-IB-7888     TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891 
"GNAS WILD-TYPE" "GNAS WILD-TYPE" "GNAS WILD-TYPE" "GNAS WILD-TYPE" 
    TCGA-IB-7893     TCGA-IB-7897     TCGA-IB-8126     TCGA-IB-8127 
"GNAS WILD-TYPE" "GNAS WILD-TYPE" "GNAS WILD-TYPE" "GNAS WILD-TYPE" 
    TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS 
  "GNAS MUTATED" "GNAS WILD-TYPE" "GNAS WILD-TYPE" "GNAS WILD-TYPE" 
    TCGA-IB-A5ST     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
"GNAS WILD-TYPE" "GNAS WILD-TYPE" "GNAS WILD-TYPE" "GNAS WILD-TYPE" 
    TCGA-PZ-A5RE     TCGA-Q3-A5QY     TCGA-US-A779     TCGA-US-A77E 
"GNAS WILD-TYPE" "GNAS WILD-TYPE" "GNAS WILD-TYPE"   "GNAS MUTATED" 
    TCGA-US-A77J 
"GNAS WILD-TYPE" 
[1] "hr=" "1.7"
D432V2, continuous
                vv
clus             STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  GNAS MUTATED          0        0         0         7         0        0
  GNAS WILD-TYPE        1        4        11        44         2        3
D432V3, multiclass
                vv
clus             T1+T2 T3+T4
  GNAS MUTATED       0     7
  GNAS WILD-TYPE     6    59
D432V4, multiclass
       clus
vv      GNAS MUTATED GNAS WILD-TYPE
  T1+T2            0              6
  T3+T4            7             59
D432V5, binary
                cls
clus              0  1
  GNAS MUTATED    0  7
  GNAS WILD-TYPE 17 47
[1] "tbl2"
                cls
clus             [,1] [,2]
  GNAS MUTATED      0    7
  GNAS WILD-TYPE   17   47
   clus
vv  GNAS MUTATED GNAS WILD-TYPE
  0            0             17
  1            7             47
                vv
clus             M0 M1 MX
  GNAS MUTATED    4  0  3
  GNAS WILD-TYPE 35  3 27
D432V6, multiclass
    clus
vv   GNAS MUTATED GNAS WILD-TYPE
  M0            4             35
  M1            0              3
  MX            3             27
D432V7, binary
                cls
clus              0  1
  GNAS MUTATED    3  4
  GNAS WILD-TYPE 33 32
[1] "tbl2"
                cls
clus             [,1] [,2]
  GNAS MUTATED      3    4
  GNAS WILD-TYPE   33   32
        clus
vv       GNAS MUTATED GNAS WILD-TYPE
  FEMALE            3             33
  MALE              4             32
                vv
clus             PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  GNAS MUTATED                                     6
  GNAS WILD-TYPE                                  59
                vv
clus             PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  GNAS MUTATED                                       1
  GNAS WILD-TYPE                                     3
                vv
clus             PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  GNAS MUTATED                                                  0
  GNAS WILD-TYPE                                                2
D432V8, multiclass
                                                  clus
vv                                                 GNAS MUTATED GNAS WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                         6             59
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                       1              3
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA            0              2
D432V9, continuous
[1] "Remove cluster labels:" "GNAS MUTATED"          
clus
  GNAS MUTATED GNAS WILD-TYPE 
             1             21 
    TCGA-F2-6880     TCGA-FB-A4P5     TCGA-FB-A4P6     TCGA-FB-A5VM 
"GNAS WILD-TYPE" "GNAS WILD-TYPE" "GNAS WILD-TYPE" "GNAS WILD-TYPE" 
    TCGA-FB-A78T     TCGA-FB-A7DR     TCGA-H6-8124     TCGA-H6-A45N 
"GNAS WILD-TYPE" "GNAS WILD-TYPE" "GNAS WILD-TYPE" "GNAS WILD-TYPE" 
    TCGA-H8-A6C1     TCGA-IB-7644     TCGA-IB-7649     TCGA-IB-7885 
"GNAS WILD-TYPE" "GNAS WILD-TYPE" "GNAS WILD-TYPE" "GNAS WILD-TYPE" 
    TCGA-IB-7886     TCGA-IB-7887     TCGA-IB-7891     TCGA-IB-8126 
"GNAS WILD-TYPE" "GNAS WILD-TYPE" "GNAS WILD-TYPE" "GNAS WILD-TYPE" 
    TCGA-IB-8127     TCGA-IB-A5SS     TCGA-IB-A6UG     TCGA-LB-A7SX 
"GNAS WILD-TYPE" "GNAS WILD-TYPE" "GNAS WILD-TYPE" "GNAS WILD-TYPE" 
    TCGA-OE-A75W 
"GNAS WILD-TYPE" 
D432V10, continuous
[1] "Remove cluster labels:" "GNAS MUTATED"          
clus
  GNAS MUTATED GNAS WILD-TYPE 
             1             18 
    TCGA-FB-A4P5     TCGA-FB-A4P6     TCGA-FB-A5VM     TCGA-FB-A78T 
"GNAS WILD-TYPE" "GNAS WILD-TYPE" "GNAS WILD-TYPE" "GNAS WILD-TYPE" 
    TCGA-FB-A7DR     TCGA-H6-8124     TCGA-H8-A6C1     TCGA-IB-7644 
"GNAS WILD-TYPE" "GNAS WILD-TYPE" "GNAS WILD-TYPE" "GNAS WILD-TYPE" 
    TCGA-IB-7649     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7891 
"GNAS WILD-TYPE" "GNAS WILD-TYPE" "GNAS WILD-TYPE" "GNAS WILD-TYPE" 
    TCGA-IB-8126     TCGA-IB-8127     TCGA-IB-A5SS     TCGA-IB-A6UG 
"GNAS WILD-TYPE" "GNAS WILD-TYPE" "GNAS WILD-TYPE" "GNAS WILD-TYPE" 
    TCGA-LB-A7SX     TCGA-OE-A75W 
"GNAS WILD-TYPE" "GNAS WILD-TYPE" 
                vv
clus             R0 R1 RX
  GNAS MUTATED    3  3  1
  GNAS WILD-TYPE 39 21  1
D432V11, multiclass
    clus
vv   GNAS MUTATED GNAS WILD-TYPE
  R0            3             39
  R1            3             21
  RX            1              1
D432V12, continuous

Clustering(433) Variable = HMMR MUTATION ANALYSIS
D433V1, survival
                sevent
clus2             0  1
  HMMR MUTATED    3  2
  HMMR WILD-TYPE 37 27
  HMMR MUTATED HMMR WILD-TYPE 
             5             64 
  HMMR MUTATED HMMR WILD-TYPE 
             2             27 
$`HMMR MUTATED`
TCGA-FB-A4P5 TCGA-H6-8124 TCGA-HZ-A49H TCGA-HZ-A4BK TCGA-IB-7651 
        0.13        12.89         0.95         1.51        19.82 

$`HMMR WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR TCGA-FZ-5920 
       11.93        12.66         2.47         0.03         5.46         2.01 
TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7289 TCGA-HZ-7918 
       36.20        20.81         7.66        13.02         7.89         0.92 
TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 
        0.66         0.13         0.26        12.13        11.87         0.26 
TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 
        0.62         0.79         0.69         3.95         0.92         0.53 
TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A4BH TCGA-IB-7644 TCGA-IB-7645 
        0.16         2.99         0.76         6.38        11.41        49.38 
TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7886 
        4.77        21.90        15.35        15.65        27.98         4.04 
TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-7893 
        3.62        43.79        15.81        19.66        16.04         3.85 
TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ 
       15.98         0.56        17.16        10.82         9.86         7.20 
TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W TCGA-PZ-A5RE 
       15.12         0.26         1.35         4.18         3.62         8.12 
TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
       13.68        16.80        14.14        18.67 

  HMMR MUTATED HMMR WILD-TYPE 
          0.13           0.03 
  HMMR MUTATED HMMR WILD-TYPE 
         19.82          49.38 
  HMMR MUTATED HMMR WILD-TYPE 
         1.510          7.775 
[1] "0.1 - 19.8 (1.5)" "0.0 - 49.4 (7.8)"
    TCGA-F2-6879     TCGA-F2-6880     TCGA-F2-7273     TCGA-F2-7276 
"HMMR WILD-TYPE" "HMMR WILD-TYPE" "HMMR WILD-TYPE" "HMMR WILD-TYPE" 
    TCGA-F2-A44G     TCGA-F2-A44H     TCGA-FB-A4P5     TCGA-FB-A4P6 
"HMMR WILD-TYPE" "HMMR WILD-TYPE"   "HMMR MUTATED" "HMMR WILD-TYPE" 
    TCGA-FB-A545     TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-FB-A7DR 
"HMMR WILD-TYPE" "HMMR WILD-TYPE" "HMMR WILD-TYPE" "HMMR WILD-TYPE" 
    TCGA-FZ-5920     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-H6-8124 
"HMMR WILD-TYPE" "HMMR WILD-TYPE" "HMMR WILD-TYPE"   "HMMR MUTATED" 
    TCGA-H6-A45N     TCGA-H8-A6C1     TCGA-HZ-7289     TCGA-HZ-7918 
"HMMR WILD-TYPE" "HMMR WILD-TYPE" "HMMR WILD-TYPE" "HMMR WILD-TYPE" 
    TCGA-HZ-7919     TCGA-HZ-7922     TCGA-HZ-7923     TCGA-HZ-7924 
"HMMR WILD-TYPE" "HMMR WILD-TYPE" "HMMR WILD-TYPE" "HMMR WILD-TYPE" 
    TCGA-HZ-7925     TCGA-HZ-7926     TCGA-HZ-8001     TCGA-HZ-8002 
"HMMR WILD-TYPE" "HMMR WILD-TYPE" "HMMR WILD-TYPE" "HMMR WILD-TYPE" 
    TCGA-HZ-8003     TCGA-HZ-8005     TCGA-HZ-8315     TCGA-HZ-8317 
"HMMR WILD-TYPE" "HMMR WILD-TYPE" "HMMR WILD-TYPE" "HMMR WILD-TYPE" 
    TCGA-HZ-8636     TCGA-HZ-8638     TCGA-HZ-A49G     TCGA-HZ-A49H 
"HMMR WILD-TYPE" "HMMR WILD-TYPE" "HMMR WILD-TYPE"   "HMMR MUTATED" 
    TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-IB-7644     TCGA-IB-7645 
"HMMR WILD-TYPE"   "HMMR MUTATED" "HMMR WILD-TYPE" "HMMR WILD-TYPE" 
    TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7651 
"HMMR WILD-TYPE" "HMMR WILD-TYPE" "HMMR WILD-TYPE"   "HMMR MUTATED" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887 
"HMMR WILD-TYPE" "HMMR WILD-TYPE" "HMMR WILD-TYPE" "HMMR WILD-TYPE" 
    TCGA-IB-7888     TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891 
"HMMR WILD-TYPE" "HMMR WILD-TYPE" "HMMR WILD-TYPE" "HMMR WILD-TYPE" 
    TCGA-IB-7893     TCGA-IB-7897     TCGA-IB-8126     TCGA-IB-8127 
"HMMR WILD-TYPE" "HMMR WILD-TYPE" "HMMR WILD-TYPE" "HMMR WILD-TYPE" 
    TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS 
"HMMR WILD-TYPE" "HMMR WILD-TYPE" "HMMR WILD-TYPE" "HMMR WILD-TYPE" 
    TCGA-IB-A5ST     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
"HMMR WILD-TYPE" "HMMR WILD-TYPE" "HMMR WILD-TYPE" "HMMR WILD-TYPE" 
    TCGA-PZ-A5RE     TCGA-Q3-A5QY     TCGA-US-A779     TCGA-US-A77E 
"HMMR WILD-TYPE" "HMMR WILD-TYPE" "HMMR WILD-TYPE" "HMMR WILD-TYPE" 
    TCGA-US-A77J 
"HMMR WILD-TYPE" 
    TCGA-F2-6879     TCGA-F2-6880     TCGA-F2-7273     TCGA-F2-7276 
"HMMR WILD-TYPE" "HMMR WILD-TYPE" "HMMR WILD-TYPE" "HMMR WILD-TYPE" 
    TCGA-F2-A44G     TCGA-F2-A44H     TCGA-FB-A4P5     TCGA-FB-A4P6 
"HMMR WILD-TYPE" "HMMR WILD-TYPE"   "HMMR MUTATED" "HMMR WILD-TYPE" 
    TCGA-FB-A545     TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-FB-A7DR 
"HMMR WILD-TYPE" "HMMR WILD-TYPE" "HMMR WILD-TYPE" "HMMR WILD-TYPE" 
    TCGA-FZ-5920     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-H6-8124 
"HMMR WILD-TYPE" "HMMR WILD-TYPE" "HMMR WILD-TYPE"   "HMMR MUTATED" 
    TCGA-H6-A45N     TCGA-H8-A6C1     TCGA-HZ-7289     TCGA-HZ-7918 
"HMMR WILD-TYPE" "HMMR WILD-TYPE" "HMMR WILD-TYPE" "HMMR WILD-TYPE" 
    TCGA-HZ-7919     TCGA-HZ-7922     TCGA-HZ-7923     TCGA-HZ-7924 
"HMMR WILD-TYPE" "HMMR WILD-TYPE" "HMMR WILD-TYPE" "HMMR WILD-TYPE" 
    TCGA-HZ-7925     TCGA-HZ-7926     TCGA-HZ-8001     TCGA-HZ-8002 
"HMMR WILD-TYPE" "HMMR WILD-TYPE" "HMMR WILD-TYPE" "HMMR WILD-TYPE" 
    TCGA-HZ-8003     TCGA-HZ-8005     TCGA-HZ-8315     TCGA-HZ-8317 
"HMMR WILD-TYPE" "HMMR WILD-TYPE" "HMMR WILD-TYPE" "HMMR WILD-TYPE" 
    TCGA-HZ-8636     TCGA-HZ-8638     TCGA-HZ-A49G     TCGA-HZ-A49H 
"HMMR WILD-TYPE" "HMMR WILD-TYPE" "HMMR WILD-TYPE"   "HMMR MUTATED" 
    TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-IB-7644     TCGA-IB-7645 
"HMMR WILD-TYPE"   "HMMR MUTATED" "HMMR WILD-TYPE" "HMMR WILD-TYPE" 
    TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7651 
"HMMR WILD-TYPE" "HMMR WILD-TYPE" "HMMR WILD-TYPE"   "HMMR MUTATED" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887 
"HMMR WILD-TYPE" "HMMR WILD-TYPE" "HMMR WILD-TYPE" "HMMR WILD-TYPE" 
    TCGA-IB-7888     TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891 
"HMMR WILD-TYPE" "HMMR WILD-TYPE" "HMMR WILD-TYPE" "HMMR WILD-TYPE" 
    TCGA-IB-7893     TCGA-IB-7897     TCGA-IB-8126     TCGA-IB-8127 
"HMMR WILD-TYPE" "HMMR WILD-TYPE" "HMMR WILD-TYPE" "HMMR WILD-TYPE" 
    TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS 
"HMMR WILD-TYPE" "HMMR WILD-TYPE" "HMMR WILD-TYPE" "HMMR WILD-TYPE" 
    TCGA-IB-A5ST     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
"HMMR WILD-TYPE" "HMMR WILD-TYPE" "HMMR WILD-TYPE" "HMMR WILD-TYPE" 
    TCGA-PZ-A5RE     TCGA-Q3-A5QY     TCGA-US-A779     TCGA-US-A77E 
"HMMR WILD-TYPE" "HMMR WILD-TYPE" "HMMR WILD-TYPE" "HMMR WILD-TYPE" 
    TCGA-US-A77J 
"HMMR WILD-TYPE" 
    TCGA-F2-6879     TCGA-F2-6880     TCGA-F2-7273     TCGA-F2-7276 
"HMMR WILD-TYPE" "HMMR WILD-TYPE" "HMMR WILD-TYPE" "HMMR WILD-TYPE" 
    TCGA-F2-A44G     TCGA-F2-A44H     TCGA-FB-A4P5     TCGA-FB-A4P6 
"HMMR WILD-TYPE" "HMMR WILD-TYPE"   "HMMR MUTATED" "HMMR WILD-TYPE" 
    TCGA-FB-A545     TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-FB-A7DR 
"HMMR WILD-TYPE" "HMMR WILD-TYPE" "HMMR WILD-TYPE" "HMMR WILD-TYPE" 
    TCGA-FZ-5920     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-H6-8124 
"HMMR WILD-TYPE" "HMMR WILD-TYPE" "HMMR WILD-TYPE"   "HMMR MUTATED" 
    TCGA-H6-A45N     TCGA-H8-A6C1     TCGA-HZ-7289     TCGA-HZ-7918 
"HMMR WILD-TYPE" "HMMR WILD-TYPE" "HMMR WILD-TYPE" "HMMR WILD-TYPE" 
    TCGA-HZ-7919     TCGA-HZ-7922     TCGA-HZ-7923     TCGA-HZ-7924 
"HMMR WILD-TYPE" "HMMR WILD-TYPE" "HMMR WILD-TYPE" "HMMR WILD-TYPE" 
    TCGA-HZ-7925     TCGA-HZ-7926     TCGA-HZ-8001     TCGA-HZ-8002 
"HMMR WILD-TYPE" "HMMR WILD-TYPE" "HMMR WILD-TYPE" "HMMR WILD-TYPE" 
    TCGA-HZ-8003     TCGA-HZ-8005     TCGA-HZ-8315     TCGA-HZ-8317 
"HMMR WILD-TYPE" "HMMR WILD-TYPE" "HMMR WILD-TYPE" "HMMR WILD-TYPE" 
    TCGA-HZ-8636     TCGA-HZ-8638     TCGA-HZ-A49G     TCGA-HZ-A49H 
"HMMR WILD-TYPE" "HMMR WILD-TYPE" "HMMR WILD-TYPE"   "HMMR MUTATED" 
    TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-IB-7644     TCGA-IB-7645 
"HMMR WILD-TYPE"   "HMMR MUTATED" "HMMR WILD-TYPE" "HMMR WILD-TYPE" 
    TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7651 
"HMMR WILD-TYPE" "HMMR WILD-TYPE" "HMMR WILD-TYPE"   "HMMR MUTATED" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887 
"HMMR WILD-TYPE" "HMMR WILD-TYPE" "HMMR WILD-TYPE" "HMMR WILD-TYPE" 
    TCGA-IB-7888     TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891 
"HMMR WILD-TYPE" "HMMR WILD-TYPE" "HMMR WILD-TYPE" "HMMR WILD-TYPE" 
    TCGA-IB-7893     TCGA-IB-7897     TCGA-IB-8126     TCGA-IB-8127 
"HMMR WILD-TYPE" "HMMR WILD-TYPE" "HMMR WILD-TYPE" "HMMR WILD-TYPE" 
    TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS 
"HMMR WILD-TYPE" "HMMR WILD-TYPE" "HMMR WILD-TYPE" "HMMR WILD-TYPE" 
    TCGA-IB-A5ST     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
"HMMR WILD-TYPE" "HMMR WILD-TYPE" "HMMR WILD-TYPE" "HMMR WILD-TYPE" 
    TCGA-PZ-A5RE     TCGA-Q3-A5QY     TCGA-US-A779     TCGA-US-A77E 
"HMMR WILD-TYPE" "HMMR WILD-TYPE" "HMMR WILD-TYPE" "HMMR WILD-TYPE" 
    TCGA-US-A77J 
"HMMR WILD-TYPE" 
[1] "hr=" "1.3"
D433V2, continuous
                vv
clus             STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  HMMR MUTATED          0        1         0         5         0        0
  HMMR WILD-TYPE        1        3        11        46         2        3
D433V3, multiclass
                vv
clus             T1+T2 T3+T4
  HMMR MUTATED       1     5
  HMMR WILD-TYPE     5    61
D433V4, multiclass
       clus
vv      HMMR MUTATED HMMR WILD-TYPE
  T1+T2            1              5
  T3+T4            5             61
D433V5, binary
                cls
clus              0  1
  HMMR MUTATED    1  5
  HMMR WILD-TYPE 16 49
[1] "tbl2"
                cls
clus             [,1] [,2]
  HMMR MUTATED      1    5
  HMMR WILD-TYPE   16   49
   clus
vv  HMMR MUTATED HMMR WILD-TYPE
  0            1             16
  1            5             49
                vv
clus             M0 M1 MX
  HMMR MUTATED    2  0  4
  HMMR WILD-TYPE 37  3 26
D433V6, multiclass
    clus
vv   HMMR MUTATED HMMR WILD-TYPE
  M0            2             37
  M1            0              3
  MX            4             26
D433V7, binary
                cls
clus              0  1
  HMMR MUTATED    4  2
  HMMR WILD-TYPE 32 34
[1] "tbl2"
                cls
clus             [,1] [,2]
  HMMR MUTATED      4    2
  HMMR WILD-TYPE   32   34
        clus
vv       HMMR MUTATED HMMR WILD-TYPE
  FEMALE            4             32
  MALE              2             34
                vv
clus             PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  HMMR MUTATED                                     5
  HMMR WILD-TYPE                                  60
                vv
clus             PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  HMMR MUTATED                                       1
  HMMR WILD-TYPE                                     3
                vv
clus             PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  HMMR MUTATED                                                  0
  HMMR WILD-TYPE                                                2
D433V8, multiclass
                                                  clus
vv                                                 HMMR MUTATED HMMR WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                         5             60
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                       1              3
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA            0              2
D433V9, continuous
D433V10, continuous
                vv
clus             R0 R1 RX
  HMMR MUTATED    5  1  0
  HMMR WILD-TYPE 37 23  2
D433V11, multiclass
    clus
vv   HMMR MUTATED HMMR WILD-TYPE
  R0            5             37
  R1            1             23
  RX            0              2
D433V12, continuous

Clustering(434) Variable = MBD6 MUTATION ANALYSIS
D434V1, survival
                sevent
clus2             0  1
  MBD6 MUTATED    2  2
  MBD6 WILD-TYPE 38 27
  MBD6 MUTATED MBD6 WILD-TYPE 
             4             65 
  MBD6 MUTATED MBD6 WILD-TYPE 
             2             27 
$`MBD6 MUTATED`
TCGA-H6-8124 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-8127 
       12.89        43.79        15.81        17.16 

$`MBD6 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P5 TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR 
        0.13        11.93        12.66         2.47         0.03         5.46 
TCGA-FZ-5920 TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7289 
        2.01        36.20        20.81         7.66        13.02         7.89 
TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 
        0.92         0.66         0.13         0.26        12.13        11.87 
TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 
        0.26         0.62         0.79         0.69         3.95         0.92 
TCGA-HZ-8317 TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH 
        0.53         0.16         2.99         0.76         0.95         6.38 
TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 
        1.51        11.41        49.38         4.77        21.90        15.35 
TCGA-IB-7651 TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7890 
       19.82        15.65        27.98         4.04         3.62        19.66 
TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-A5SO TCGA-IB-A5SP 
       16.04         3.85        15.98         0.56        10.82         9.86 
TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W 
        7.20        15.12         0.26         1.35         4.18         3.62 
TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
        8.12        13.68        16.80        14.14        18.67 

  MBD6 MUTATED MBD6 WILD-TYPE 
         12.89           0.03 
  MBD6 MUTATED MBD6 WILD-TYPE 
         43.79          49.38 
  MBD6 MUTATED MBD6 WILD-TYPE 
        16.485          7.100 
[1] "12.9 - 43.8 (16.5)" "0.0 - 49.4 (7.1)"  
    TCGA-F2-6879     TCGA-F2-6880     TCGA-F2-7273     TCGA-F2-7276 
"MBD6 WILD-TYPE" "MBD6 WILD-TYPE" "MBD6 WILD-TYPE" "MBD6 WILD-TYPE" 
    TCGA-F2-A44G     TCGA-F2-A44H     TCGA-FB-A4P5     TCGA-FB-A4P6 
"MBD6 WILD-TYPE" "MBD6 WILD-TYPE" "MBD6 WILD-TYPE" "MBD6 WILD-TYPE" 
    TCGA-FB-A545     TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-FB-A7DR 
"MBD6 WILD-TYPE" "MBD6 WILD-TYPE" "MBD6 WILD-TYPE" "MBD6 WILD-TYPE" 
    TCGA-FZ-5920     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-H6-8124 
"MBD6 WILD-TYPE" "MBD6 WILD-TYPE" "MBD6 WILD-TYPE"   "MBD6 MUTATED" 
    TCGA-H6-A45N     TCGA-H8-A6C1     TCGA-HZ-7289     TCGA-HZ-7918 
"MBD6 WILD-TYPE" "MBD6 WILD-TYPE" "MBD6 WILD-TYPE" "MBD6 WILD-TYPE" 
    TCGA-HZ-7919     TCGA-HZ-7922     TCGA-HZ-7923     TCGA-HZ-7924 
"MBD6 WILD-TYPE" "MBD6 WILD-TYPE" "MBD6 WILD-TYPE" "MBD6 WILD-TYPE" 
    TCGA-HZ-7925     TCGA-HZ-7926     TCGA-HZ-8001     TCGA-HZ-8002 
"MBD6 WILD-TYPE" "MBD6 WILD-TYPE" "MBD6 WILD-TYPE" "MBD6 WILD-TYPE" 
    TCGA-HZ-8003     TCGA-HZ-8005     TCGA-HZ-8315     TCGA-HZ-8317 
"MBD6 WILD-TYPE" "MBD6 WILD-TYPE" "MBD6 WILD-TYPE" "MBD6 WILD-TYPE" 
    TCGA-HZ-8636     TCGA-HZ-8638     TCGA-HZ-A49G     TCGA-HZ-A49H 
"MBD6 WILD-TYPE" "MBD6 WILD-TYPE" "MBD6 WILD-TYPE" "MBD6 WILD-TYPE" 
    TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-IB-7644     TCGA-IB-7645 
"MBD6 WILD-TYPE" "MBD6 WILD-TYPE" "MBD6 WILD-TYPE" "MBD6 WILD-TYPE" 
    TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7651 
"MBD6 WILD-TYPE" "MBD6 WILD-TYPE" "MBD6 WILD-TYPE" "MBD6 WILD-TYPE" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887 
"MBD6 WILD-TYPE" "MBD6 WILD-TYPE" "MBD6 WILD-TYPE" "MBD6 WILD-TYPE" 
    TCGA-IB-7888     TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891 
  "MBD6 MUTATED"   "MBD6 MUTATED" "MBD6 WILD-TYPE" "MBD6 WILD-TYPE" 
    TCGA-IB-7893     TCGA-IB-7897     TCGA-IB-8126     TCGA-IB-8127 
"MBD6 WILD-TYPE" "MBD6 WILD-TYPE" "MBD6 WILD-TYPE"   "MBD6 MUTATED" 
    TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS 
"MBD6 WILD-TYPE" "MBD6 WILD-TYPE" "MBD6 WILD-TYPE" "MBD6 WILD-TYPE" 
    TCGA-IB-A5ST     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
"MBD6 WILD-TYPE" "MBD6 WILD-TYPE" "MBD6 WILD-TYPE" "MBD6 WILD-TYPE" 
    TCGA-PZ-A5RE     TCGA-Q3-A5QY     TCGA-US-A779     TCGA-US-A77E 
"MBD6 WILD-TYPE" "MBD6 WILD-TYPE" "MBD6 WILD-TYPE" "MBD6 WILD-TYPE" 
    TCGA-US-A77J 
"MBD6 WILD-TYPE" 
    TCGA-F2-6879     TCGA-F2-6880     TCGA-F2-7273     TCGA-F2-7276 
"MBD6 WILD-TYPE" "MBD6 WILD-TYPE" "MBD6 WILD-TYPE" "MBD6 WILD-TYPE" 
    TCGA-F2-A44G     TCGA-F2-A44H     TCGA-FB-A4P5     TCGA-FB-A4P6 
"MBD6 WILD-TYPE" "MBD6 WILD-TYPE" "MBD6 WILD-TYPE" "MBD6 WILD-TYPE" 
    TCGA-FB-A545     TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-FB-A7DR 
"MBD6 WILD-TYPE" "MBD6 WILD-TYPE" "MBD6 WILD-TYPE" "MBD6 WILD-TYPE" 
    TCGA-FZ-5920     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-H6-8124 
"MBD6 WILD-TYPE" "MBD6 WILD-TYPE" "MBD6 WILD-TYPE"   "MBD6 MUTATED" 
    TCGA-H6-A45N     TCGA-H8-A6C1     TCGA-HZ-7289     TCGA-HZ-7918 
"MBD6 WILD-TYPE" "MBD6 WILD-TYPE" "MBD6 WILD-TYPE" "MBD6 WILD-TYPE" 
    TCGA-HZ-7919     TCGA-HZ-7922     TCGA-HZ-7923     TCGA-HZ-7924 
"MBD6 WILD-TYPE" "MBD6 WILD-TYPE" "MBD6 WILD-TYPE" "MBD6 WILD-TYPE" 
    TCGA-HZ-7925     TCGA-HZ-7926     TCGA-HZ-8001     TCGA-HZ-8002 
"MBD6 WILD-TYPE" "MBD6 WILD-TYPE" "MBD6 WILD-TYPE" "MBD6 WILD-TYPE" 
    TCGA-HZ-8003     TCGA-HZ-8005     TCGA-HZ-8315     TCGA-HZ-8317 
"MBD6 WILD-TYPE" "MBD6 WILD-TYPE" "MBD6 WILD-TYPE" "MBD6 WILD-TYPE" 
    TCGA-HZ-8636     TCGA-HZ-8638     TCGA-HZ-A49G     TCGA-HZ-A49H 
"MBD6 WILD-TYPE" "MBD6 WILD-TYPE" "MBD6 WILD-TYPE" "MBD6 WILD-TYPE" 
    TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-IB-7644     TCGA-IB-7645 
"MBD6 WILD-TYPE" "MBD6 WILD-TYPE" "MBD6 WILD-TYPE" "MBD6 WILD-TYPE" 
    TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7651 
"MBD6 WILD-TYPE" "MBD6 WILD-TYPE" "MBD6 WILD-TYPE" "MBD6 WILD-TYPE" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887 
"MBD6 WILD-TYPE" "MBD6 WILD-TYPE" "MBD6 WILD-TYPE" "MBD6 WILD-TYPE" 
    TCGA-IB-7888     TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891 
  "MBD6 MUTATED"   "MBD6 MUTATED" "MBD6 WILD-TYPE" "MBD6 WILD-TYPE" 
    TCGA-IB-7893     TCGA-IB-7897     TCGA-IB-8126     TCGA-IB-8127 
"MBD6 WILD-TYPE" "MBD6 WILD-TYPE" "MBD6 WILD-TYPE"   "MBD6 MUTATED" 
    TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS 
"MBD6 WILD-TYPE" "MBD6 WILD-TYPE" "MBD6 WILD-TYPE" "MBD6 WILD-TYPE" 
    TCGA-IB-A5ST     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
"MBD6 WILD-TYPE" "MBD6 WILD-TYPE" "MBD6 WILD-TYPE" "MBD6 WILD-TYPE" 
    TCGA-PZ-A5RE     TCGA-Q3-A5QY     TCGA-US-A779     TCGA-US-A77E 
"MBD6 WILD-TYPE" "MBD6 WILD-TYPE" "MBD6 WILD-TYPE" "MBD6 WILD-TYPE" 
    TCGA-US-A77J 
"MBD6 WILD-TYPE" 
    TCGA-F2-6879     TCGA-F2-6880     TCGA-F2-7273     TCGA-F2-7276 
"MBD6 WILD-TYPE" "MBD6 WILD-TYPE" "MBD6 WILD-TYPE" "MBD6 WILD-TYPE" 
    TCGA-F2-A44G     TCGA-F2-A44H     TCGA-FB-A4P5     TCGA-FB-A4P6 
"MBD6 WILD-TYPE" "MBD6 WILD-TYPE" "MBD6 WILD-TYPE" "MBD6 WILD-TYPE" 
    TCGA-FB-A545     TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-FB-A7DR 
"MBD6 WILD-TYPE" "MBD6 WILD-TYPE" "MBD6 WILD-TYPE" "MBD6 WILD-TYPE" 
    TCGA-FZ-5920     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-H6-8124 
"MBD6 WILD-TYPE" "MBD6 WILD-TYPE" "MBD6 WILD-TYPE"   "MBD6 MUTATED" 
    TCGA-H6-A45N     TCGA-H8-A6C1     TCGA-HZ-7289     TCGA-HZ-7918 
"MBD6 WILD-TYPE" "MBD6 WILD-TYPE" "MBD6 WILD-TYPE" "MBD6 WILD-TYPE" 
    TCGA-HZ-7919     TCGA-HZ-7922     TCGA-HZ-7923     TCGA-HZ-7924 
"MBD6 WILD-TYPE" "MBD6 WILD-TYPE" "MBD6 WILD-TYPE" "MBD6 WILD-TYPE" 
    TCGA-HZ-7925     TCGA-HZ-7926     TCGA-HZ-8001     TCGA-HZ-8002 
"MBD6 WILD-TYPE" "MBD6 WILD-TYPE" "MBD6 WILD-TYPE" "MBD6 WILD-TYPE" 
    TCGA-HZ-8003     TCGA-HZ-8005     TCGA-HZ-8315     TCGA-HZ-8317 
"MBD6 WILD-TYPE" "MBD6 WILD-TYPE" "MBD6 WILD-TYPE" "MBD6 WILD-TYPE" 
    TCGA-HZ-8636     TCGA-HZ-8638     TCGA-HZ-A49G     TCGA-HZ-A49H 
"MBD6 WILD-TYPE" "MBD6 WILD-TYPE" "MBD6 WILD-TYPE" "MBD6 WILD-TYPE" 
    TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-IB-7644     TCGA-IB-7645 
"MBD6 WILD-TYPE" "MBD6 WILD-TYPE" "MBD6 WILD-TYPE" "MBD6 WILD-TYPE" 
    TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7651 
"MBD6 WILD-TYPE" "MBD6 WILD-TYPE" "MBD6 WILD-TYPE" "MBD6 WILD-TYPE" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887 
"MBD6 WILD-TYPE" "MBD6 WILD-TYPE" "MBD6 WILD-TYPE" "MBD6 WILD-TYPE" 
    TCGA-IB-7888     TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891 
  "MBD6 MUTATED"   "MBD6 MUTATED" "MBD6 WILD-TYPE" "MBD6 WILD-TYPE" 
    TCGA-IB-7893     TCGA-IB-7897     TCGA-IB-8126     TCGA-IB-8127 
"MBD6 WILD-TYPE" "MBD6 WILD-TYPE" "MBD6 WILD-TYPE"   "MBD6 MUTATED" 
    TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS 
"MBD6 WILD-TYPE" "MBD6 WILD-TYPE" "MBD6 WILD-TYPE" "MBD6 WILD-TYPE" 
    TCGA-IB-A5ST     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
"MBD6 WILD-TYPE" "MBD6 WILD-TYPE" "MBD6 WILD-TYPE" "MBD6 WILD-TYPE" 
    TCGA-PZ-A5RE     TCGA-Q3-A5QY     TCGA-US-A779     TCGA-US-A77E 
"MBD6 WILD-TYPE" "MBD6 WILD-TYPE" "MBD6 WILD-TYPE" "MBD6 WILD-TYPE" 
    TCGA-US-A77J 
"MBD6 WILD-TYPE" 
[1] "hr=" "2.3"
D434V2, continuous
                vv
clus             STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  MBD6 MUTATED          0        0         1         3         0        0
  MBD6 WILD-TYPE        1        4        10        48         2        3
D434V3, multiclass
                vv
clus             T1+T2 T3+T4
  MBD6 MUTATED       0     4
  MBD6 WILD-TYPE     6    62
D434V4, multiclass
       clus
vv      MBD6 MUTATED MBD6 WILD-TYPE
  T1+T2            0              6
  T3+T4            4             62
D434V5, binary
                cls
clus              0  1
  MBD6 MUTATED    1  3
  MBD6 WILD-TYPE 16 51
[1] "tbl2"
                cls
clus             [,1] [,2]
  MBD6 MUTATED      1    3
  MBD6 WILD-TYPE   16   51
   clus
vv  MBD6 MUTATED MBD6 WILD-TYPE
  0            1             16
  1            3             51
                vv
clus             M0 M1 MX
  MBD6 MUTATED    4  0  0
  MBD6 WILD-TYPE 35  3 30
D434V6, multiclass
    clus
vv   MBD6 MUTATED MBD6 WILD-TYPE
  M0            4             35
  M1            0              3
  MX            0             30
D434V7, binary
                cls
clus              0  1
  MBD6 MUTATED    3  1
  MBD6 WILD-TYPE 33 35
[1] "tbl2"
                cls
clus             [,1] [,2]
  MBD6 MUTATED      3    1
  MBD6 WILD-TYPE   33   35
        clus
vv       MBD6 MUTATED MBD6 WILD-TYPE
  FEMALE            3             33
  MALE              1             35
                vv
clus             PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  MBD6 MUTATED                                     4
  MBD6 WILD-TYPE                                  61
                vv
clus             PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  MBD6 MUTATED                                       0
  MBD6 WILD-TYPE                                     4
                vv
clus             PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  MBD6 MUTATED                                                  0
  MBD6 WILD-TYPE                                                2
D434V8, multiclass
                                                  clus
vv                                                 MBD6 MUTATED MBD6 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                         4             61
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                       0              4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA            0              2
D434V9, continuous
[1] "Remove cluster labels:" "MBD6 MUTATED"          
clus
  MBD6 MUTATED MBD6 WILD-TYPE 
             2             20 
    TCGA-F2-6880     TCGA-FB-A4P5     TCGA-FB-A4P6     TCGA-FB-A5VM 
"MBD6 WILD-TYPE" "MBD6 WILD-TYPE" "MBD6 WILD-TYPE" "MBD6 WILD-TYPE" 
    TCGA-FB-A78T     TCGA-FB-A7DR     TCGA-H6-A45N     TCGA-H8-A6C1 
"MBD6 WILD-TYPE" "MBD6 WILD-TYPE" "MBD6 WILD-TYPE" "MBD6 WILD-TYPE" 
    TCGA-IB-7644     TCGA-IB-7649     TCGA-IB-7651     TCGA-IB-7885 
"MBD6 WILD-TYPE" "MBD6 WILD-TYPE" "MBD6 WILD-TYPE" "MBD6 WILD-TYPE" 
    TCGA-IB-7886     TCGA-IB-7887     TCGA-IB-7891     TCGA-IB-8126 
"MBD6 WILD-TYPE" "MBD6 WILD-TYPE" "MBD6 WILD-TYPE" "MBD6 WILD-TYPE" 
    TCGA-IB-A5SS     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
"MBD6 WILD-TYPE" "MBD6 WILD-TYPE" "MBD6 WILD-TYPE" "MBD6 WILD-TYPE" 
D434V10, continuous
[1] "Remove cluster labels:" "MBD6 MUTATED"          
clus
  MBD6 MUTATED MBD6 WILD-TYPE 
             2             17 
    TCGA-FB-A4P5     TCGA-FB-A4P6     TCGA-FB-A5VM     TCGA-FB-A78T 
"MBD6 WILD-TYPE" "MBD6 WILD-TYPE" "MBD6 WILD-TYPE" "MBD6 WILD-TYPE" 
    TCGA-FB-A7DR     TCGA-H8-A6C1     TCGA-IB-7644     TCGA-IB-7649 
"MBD6 WILD-TYPE" "MBD6 WILD-TYPE" "MBD6 WILD-TYPE" "MBD6 WILD-TYPE" 
    TCGA-IB-7651     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7891 
"MBD6 WILD-TYPE" "MBD6 WILD-TYPE" "MBD6 WILD-TYPE" "MBD6 WILD-TYPE" 
    TCGA-IB-8126     TCGA-IB-A5SS     TCGA-IB-A6UG     TCGA-LB-A7SX 
"MBD6 WILD-TYPE" "MBD6 WILD-TYPE" "MBD6 WILD-TYPE" "MBD6 WILD-TYPE" 
    TCGA-OE-A75W 
"MBD6 WILD-TYPE" 
                vv
clus             R0 R1 RX
  MBD6 MUTATED    3  1  0
  MBD6 WILD-TYPE 39 23  2
D434V11, multiclass
    clus
vv   MBD6 MUTATED MBD6 WILD-TYPE
  R0            3             39
  R1            1             23
  RX            0              2
D434V12, continuous

Clustering(435) Variable = NDUFAF2 MUTATION ANALYSIS
D435V1, survival
                   sevent
clus2                0  1
  NDUFAF2 MUTATED    2  2
  NDUFAF2 WILD-TYPE 38 27
  NDUFAF2 MUTATED NDUFAF2 WILD-TYPE 
                4                65 
  NDUFAF2 MUTATED NDUFAF2 WILD-TYPE 
                2                27 
$`NDUFAF2 MUTATED`
TCGA-FB-A7DR TCGA-HZ-7925 TCGA-IB-7645 TCGA-IB-7897 
        5.46        11.87        49.38        15.98 

$`NDUFAF2 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P5 TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FZ-5920 
        0.13        11.93        12.66         2.47         0.03         2.01 
TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7289 
       36.20        20.81        12.89         7.66        13.02         7.89 
TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7926 
        0.92         0.66         0.13         0.26        12.13         0.26 
TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 
        0.62         0.79         0.69         3.95         0.92         0.53 
TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK 
        0.16         2.99         0.76         0.95         6.38         1.51 
TCGA-IB-7644 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7651 TCGA-IB-7652 
       11.41         4.77        21.90        15.35        19.82        15.65 
TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 
       27.98         4.04         3.62        43.79        15.81        19.66 
TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP 
       16.04         3.85         0.56        17.16        10.82         9.86 
TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W 
        7.20        15.12         0.26         1.35         4.18         3.62 
TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
        8.12        13.68        16.80        14.14        18.67 

  NDUFAF2 MUTATED NDUFAF2 WILD-TYPE 
             5.46              0.03 
  NDUFAF2 MUTATED NDUFAF2 WILD-TYPE 
            49.38             43.79 
  NDUFAF2 MUTATED NDUFAF2 WILD-TYPE 
           13.925             7.200 
[1] "5.5 - 49.4 (13.9)" "0.0 - 43.8 (7.2)" 
       TCGA-F2-6879        TCGA-F2-6880        TCGA-F2-7273        TCGA-F2-7276 
"NDUFAF2 WILD-TYPE" "NDUFAF2 WILD-TYPE" "NDUFAF2 WILD-TYPE" "NDUFAF2 WILD-TYPE" 
       TCGA-F2-A44G        TCGA-F2-A44H        TCGA-FB-A4P5        TCGA-FB-A4P6 
"NDUFAF2 WILD-TYPE" "NDUFAF2 WILD-TYPE" "NDUFAF2 WILD-TYPE" "NDUFAF2 WILD-TYPE" 
       TCGA-FB-A545        TCGA-FB-A5VM        TCGA-FB-A78T        TCGA-FB-A7DR 
"NDUFAF2 WILD-TYPE" "NDUFAF2 WILD-TYPE" "NDUFAF2 WILD-TYPE"   "NDUFAF2 MUTATED" 
       TCGA-FZ-5920        TCGA-FZ-5922        TCGA-FZ-5923        TCGA-H6-8124 
"NDUFAF2 WILD-TYPE" "NDUFAF2 WILD-TYPE" "NDUFAF2 WILD-TYPE" "NDUFAF2 WILD-TYPE" 
       TCGA-H6-A45N        TCGA-H8-A6C1        TCGA-HZ-7289        TCGA-HZ-7918 
"NDUFAF2 WILD-TYPE" "NDUFAF2 WILD-TYPE" "NDUFAF2 WILD-TYPE" "NDUFAF2 WILD-TYPE" 
       TCGA-HZ-7919        TCGA-HZ-7922        TCGA-HZ-7923        TCGA-HZ-7924 
"NDUFAF2 WILD-TYPE" "NDUFAF2 WILD-TYPE" "NDUFAF2 WILD-TYPE" "NDUFAF2 WILD-TYPE" 
       TCGA-HZ-7925        TCGA-HZ-7926        TCGA-HZ-8001        TCGA-HZ-8002 
  "NDUFAF2 MUTATED" "NDUFAF2 WILD-TYPE" "NDUFAF2 WILD-TYPE" "NDUFAF2 WILD-TYPE" 
       TCGA-HZ-8003        TCGA-HZ-8005        TCGA-HZ-8315        TCGA-HZ-8317 
"NDUFAF2 WILD-TYPE" "NDUFAF2 WILD-TYPE" "NDUFAF2 WILD-TYPE" "NDUFAF2 WILD-TYPE" 
       TCGA-HZ-8636        TCGA-HZ-8638        TCGA-HZ-A49G        TCGA-HZ-A49H 
"NDUFAF2 WILD-TYPE" "NDUFAF2 WILD-TYPE" "NDUFAF2 WILD-TYPE" "NDUFAF2 WILD-TYPE" 
       TCGA-HZ-A4BH        TCGA-HZ-A4BK        TCGA-IB-7644        TCGA-IB-7645 
"NDUFAF2 WILD-TYPE" "NDUFAF2 WILD-TYPE" "NDUFAF2 WILD-TYPE"   "NDUFAF2 MUTATED" 
       TCGA-IB-7646        TCGA-IB-7647        TCGA-IB-7649        TCGA-IB-7651 
"NDUFAF2 WILD-TYPE" "NDUFAF2 WILD-TYPE" "NDUFAF2 WILD-TYPE" "NDUFAF2 WILD-TYPE" 
       TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-7886        TCGA-IB-7887 
"NDUFAF2 WILD-TYPE" "NDUFAF2 WILD-TYPE" "NDUFAF2 WILD-TYPE" "NDUFAF2 WILD-TYPE" 
       TCGA-IB-7888        TCGA-IB-7889        TCGA-IB-7890        TCGA-IB-7891 
"NDUFAF2 WILD-TYPE" "NDUFAF2 WILD-TYPE" "NDUFAF2 WILD-TYPE" "NDUFAF2 WILD-TYPE" 
       TCGA-IB-7893        TCGA-IB-7897        TCGA-IB-8126        TCGA-IB-8127 
"NDUFAF2 WILD-TYPE"   "NDUFAF2 MUTATED" "NDUFAF2 WILD-TYPE" "NDUFAF2 WILD-TYPE" 
       TCGA-IB-A5SO        TCGA-IB-A5SP        TCGA-IB-A5SQ        TCGA-IB-A5SS 
"NDUFAF2 WILD-TYPE" "NDUFAF2 WILD-TYPE" "NDUFAF2 WILD-TYPE" "NDUFAF2 WILD-TYPE" 
       TCGA-IB-A5ST        TCGA-IB-A6UG        TCGA-LB-A7SX        TCGA-OE-A75W 
"NDUFAF2 WILD-TYPE" "NDUFAF2 WILD-TYPE" "NDUFAF2 WILD-TYPE" "NDUFAF2 WILD-TYPE" 
       TCGA-PZ-A5RE        TCGA-Q3-A5QY        TCGA-US-A779        TCGA-US-A77E 
"NDUFAF2 WILD-TYPE" "NDUFAF2 WILD-TYPE" "NDUFAF2 WILD-TYPE" "NDUFAF2 WILD-TYPE" 
       TCGA-US-A77J 
"NDUFAF2 WILD-TYPE" 
       TCGA-F2-6879        TCGA-F2-6880        TCGA-F2-7273        TCGA-F2-7276 
"NDUFAF2 WILD-TYPE" "NDUFAF2 WILD-TYPE" "NDUFAF2 WILD-TYPE" "NDUFAF2 WILD-TYPE" 
       TCGA-F2-A44G        TCGA-F2-A44H        TCGA-FB-A4P5        TCGA-FB-A4P6 
"NDUFAF2 WILD-TYPE" "NDUFAF2 WILD-TYPE" "NDUFAF2 WILD-TYPE" "NDUFAF2 WILD-TYPE" 
       TCGA-FB-A545        TCGA-FB-A5VM        TCGA-FB-A78T        TCGA-FB-A7DR 
"NDUFAF2 WILD-TYPE" "NDUFAF2 WILD-TYPE" "NDUFAF2 WILD-TYPE"   "NDUFAF2 MUTATED" 
       TCGA-FZ-5920        TCGA-FZ-5922        TCGA-FZ-5923        TCGA-H6-8124 
"NDUFAF2 WILD-TYPE" "NDUFAF2 WILD-TYPE" "NDUFAF2 WILD-TYPE" "NDUFAF2 WILD-TYPE" 
       TCGA-H6-A45N        TCGA-H8-A6C1        TCGA-HZ-7289        TCGA-HZ-7918 
"NDUFAF2 WILD-TYPE" "NDUFAF2 WILD-TYPE" "NDUFAF2 WILD-TYPE" "NDUFAF2 WILD-TYPE" 
       TCGA-HZ-7919        TCGA-HZ-7922        TCGA-HZ-7923        TCGA-HZ-7924 
"NDUFAF2 WILD-TYPE" "NDUFAF2 WILD-TYPE" "NDUFAF2 WILD-TYPE" "NDUFAF2 WILD-TYPE" 
       TCGA-HZ-7925        TCGA-HZ-7926        TCGA-HZ-8001        TCGA-HZ-8002 
  "NDUFAF2 MUTATED" "NDUFAF2 WILD-TYPE" "NDUFAF2 WILD-TYPE" "NDUFAF2 WILD-TYPE" 
       TCGA-HZ-8003        TCGA-HZ-8005        TCGA-HZ-8315        TCGA-HZ-8317 
"NDUFAF2 WILD-TYPE" "NDUFAF2 WILD-TYPE" "NDUFAF2 WILD-TYPE" "NDUFAF2 WILD-TYPE" 
       TCGA-HZ-8636        TCGA-HZ-8638        TCGA-HZ-A49G        TCGA-HZ-A49H 
"NDUFAF2 WILD-TYPE" "NDUFAF2 WILD-TYPE" "NDUFAF2 WILD-TYPE" "NDUFAF2 WILD-TYPE" 
       TCGA-HZ-A4BH        TCGA-HZ-A4BK        TCGA-IB-7644        TCGA-IB-7645 
"NDUFAF2 WILD-TYPE" "NDUFAF2 WILD-TYPE" "NDUFAF2 WILD-TYPE"   "NDUFAF2 MUTATED" 
       TCGA-IB-7646        TCGA-IB-7647        TCGA-IB-7649        TCGA-IB-7651 
"NDUFAF2 WILD-TYPE" "NDUFAF2 WILD-TYPE" "NDUFAF2 WILD-TYPE" "NDUFAF2 WILD-TYPE" 
       TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-7886        TCGA-IB-7887 
"NDUFAF2 WILD-TYPE" "NDUFAF2 WILD-TYPE" "NDUFAF2 WILD-TYPE" "NDUFAF2 WILD-TYPE" 
       TCGA-IB-7888        TCGA-IB-7889        TCGA-IB-7890        TCGA-IB-7891 
"NDUFAF2 WILD-TYPE" "NDUFAF2 WILD-TYPE" "NDUFAF2 WILD-TYPE" "NDUFAF2 WILD-TYPE" 
       TCGA-IB-7893        TCGA-IB-7897        TCGA-IB-8126        TCGA-IB-8127 
"NDUFAF2 WILD-TYPE"   "NDUFAF2 MUTATED" "NDUFAF2 WILD-TYPE" "NDUFAF2 WILD-TYPE" 
       TCGA-IB-A5SO        TCGA-IB-A5SP        TCGA-IB-A5SQ        TCGA-IB-A5SS 
"NDUFAF2 WILD-TYPE" "NDUFAF2 WILD-TYPE" "NDUFAF2 WILD-TYPE" "NDUFAF2 WILD-TYPE" 
       TCGA-IB-A5ST        TCGA-IB-A6UG        TCGA-LB-A7SX        TCGA-OE-A75W 
"NDUFAF2 WILD-TYPE" "NDUFAF2 WILD-TYPE" "NDUFAF2 WILD-TYPE" "NDUFAF2 WILD-TYPE" 
       TCGA-PZ-A5RE        TCGA-Q3-A5QY        TCGA-US-A779        TCGA-US-A77E 
"NDUFAF2 WILD-TYPE" "NDUFAF2 WILD-TYPE" "NDUFAF2 WILD-TYPE" "NDUFAF2 WILD-TYPE" 
       TCGA-US-A77J 
"NDUFAF2 WILD-TYPE" 
       TCGA-F2-6879        TCGA-F2-6880        TCGA-F2-7273        TCGA-F2-7276 
"NDUFAF2 WILD-TYPE" "NDUFAF2 WILD-TYPE" "NDUFAF2 WILD-TYPE" "NDUFAF2 WILD-TYPE" 
       TCGA-F2-A44G        TCGA-F2-A44H        TCGA-FB-A4P5        TCGA-FB-A4P6 
"NDUFAF2 WILD-TYPE" "NDUFAF2 WILD-TYPE" "NDUFAF2 WILD-TYPE" "NDUFAF2 WILD-TYPE" 
       TCGA-FB-A545        TCGA-FB-A5VM        TCGA-FB-A78T        TCGA-FB-A7DR 
"NDUFAF2 WILD-TYPE" "NDUFAF2 WILD-TYPE" "NDUFAF2 WILD-TYPE"   "NDUFAF2 MUTATED" 
       TCGA-FZ-5920        TCGA-FZ-5922        TCGA-FZ-5923        TCGA-H6-8124 
"NDUFAF2 WILD-TYPE" "NDUFAF2 WILD-TYPE" "NDUFAF2 WILD-TYPE" "NDUFAF2 WILD-TYPE" 
       TCGA-H6-A45N        TCGA-H8-A6C1        TCGA-HZ-7289        TCGA-HZ-7918 
"NDUFAF2 WILD-TYPE" "NDUFAF2 WILD-TYPE" "NDUFAF2 WILD-TYPE" "NDUFAF2 WILD-TYPE" 
       TCGA-HZ-7919        TCGA-HZ-7922        TCGA-HZ-7923        TCGA-HZ-7924 
"NDUFAF2 WILD-TYPE" "NDUFAF2 WILD-TYPE" "NDUFAF2 WILD-TYPE" "NDUFAF2 WILD-TYPE" 
       TCGA-HZ-7925        TCGA-HZ-7926        TCGA-HZ-8001        TCGA-HZ-8002 
  "NDUFAF2 MUTATED" "NDUFAF2 WILD-TYPE" "NDUFAF2 WILD-TYPE" "NDUFAF2 WILD-TYPE" 
       TCGA-HZ-8003        TCGA-HZ-8005        TCGA-HZ-8315        TCGA-HZ-8317 
"NDUFAF2 WILD-TYPE" "NDUFAF2 WILD-TYPE" "NDUFAF2 WILD-TYPE" "NDUFAF2 WILD-TYPE" 
       TCGA-HZ-8636        TCGA-HZ-8638        TCGA-HZ-A49G        TCGA-HZ-A49H 
"NDUFAF2 WILD-TYPE" "NDUFAF2 WILD-TYPE" "NDUFAF2 WILD-TYPE" "NDUFAF2 WILD-TYPE" 
       TCGA-HZ-A4BH        TCGA-HZ-A4BK        TCGA-IB-7644        TCGA-IB-7645 
"NDUFAF2 WILD-TYPE" "NDUFAF2 WILD-TYPE" "NDUFAF2 WILD-TYPE"   "NDUFAF2 MUTATED" 
       TCGA-IB-7646        TCGA-IB-7647        TCGA-IB-7649        TCGA-IB-7651 
"NDUFAF2 WILD-TYPE" "NDUFAF2 WILD-TYPE" "NDUFAF2 WILD-TYPE" "NDUFAF2 WILD-TYPE" 
       TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-7886        TCGA-IB-7887 
"NDUFAF2 WILD-TYPE" "NDUFAF2 WILD-TYPE" "NDUFAF2 WILD-TYPE" "NDUFAF2 WILD-TYPE" 
       TCGA-IB-7888        TCGA-IB-7889        TCGA-IB-7890        TCGA-IB-7891 
"NDUFAF2 WILD-TYPE" "NDUFAF2 WILD-TYPE" "NDUFAF2 WILD-TYPE" "NDUFAF2 WILD-TYPE" 
       TCGA-IB-7893        TCGA-IB-7897        TCGA-IB-8126        TCGA-IB-8127 
"NDUFAF2 WILD-TYPE"   "NDUFAF2 MUTATED" "NDUFAF2 WILD-TYPE" "NDUFAF2 WILD-TYPE" 
       TCGA-IB-A5SO        TCGA-IB-A5SP        TCGA-IB-A5SQ        TCGA-IB-A5SS 
"NDUFAF2 WILD-TYPE" "NDUFAF2 WILD-TYPE" "NDUFAF2 WILD-TYPE" "NDUFAF2 WILD-TYPE" 
       TCGA-IB-A5ST        TCGA-IB-A6UG        TCGA-LB-A7SX        TCGA-OE-A75W 
"NDUFAF2 WILD-TYPE" "NDUFAF2 WILD-TYPE" "NDUFAF2 WILD-TYPE" "NDUFAF2 WILD-TYPE" 
       TCGA-PZ-A5RE        TCGA-Q3-A5QY        TCGA-US-A779        TCGA-US-A77E 
"NDUFAF2 WILD-TYPE" "NDUFAF2 WILD-TYPE" "NDUFAF2 WILD-TYPE" "NDUFAF2 WILD-TYPE" 
       TCGA-US-A77J 
"NDUFAF2 WILD-TYPE" 
[1] "hr=" "4.3"
D435V2, continuous
                   vv
clus                STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  NDUFAF2 MUTATED          0        0         1         3         0        0
  NDUFAF2 WILD-TYPE        1        4        10        48         2        3
D435V3, multiclass
                   vv
clus                T1+T2 T3+T4
  NDUFAF2 MUTATED       0     4
  NDUFAF2 WILD-TYPE     6    62
D435V4, multiclass
       clus
vv      NDUFAF2 MUTATED NDUFAF2 WILD-TYPE
  T1+T2               0                 6
  T3+T4               4                62
D435V5, binary
                   cls
clus                 0  1
  NDUFAF2 MUTATED    0  3
  NDUFAF2 WILD-TYPE 17 51
[1] "tbl2"
                   cls
clus                [,1] [,2]
  NDUFAF2 MUTATED      0    3
  NDUFAF2 WILD-TYPE   17   51
   clus
vv  NDUFAF2 MUTATED NDUFAF2 WILD-TYPE
  0               0                17
  1               3                51
                   vv
clus                M0 M1 MX
  NDUFAF2 MUTATED    3  0  1
  NDUFAF2 WILD-TYPE 36  3 29
D435V6, multiclass
    clus
vv   NDUFAF2 MUTATED NDUFAF2 WILD-TYPE
  M0               3                36
  M1               0                 3
  MX               1                29
D435V7, binary
                   cls
clus                 0  1
  NDUFAF2 MUTATED    2  2
  NDUFAF2 WILD-TYPE 34 34
[1] "tbl2"
                   cls
clus                [,1] [,2]
  NDUFAF2 MUTATED      2    2
  NDUFAF2 WILD-TYPE   34   34
        clus
vv       NDUFAF2 MUTATED NDUFAF2 WILD-TYPE
  FEMALE               2                34
  MALE                 2                34
                   vv
clus                PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  NDUFAF2 MUTATED                                     3
  NDUFAF2 WILD-TYPE                                  62
                   vv
clus                PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  NDUFAF2 MUTATED                                       0
  NDUFAF2 WILD-TYPE                                     4
                   vv
clus                PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  NDUFAF2 MUTATED                                                  1
  NDUFAF2 WILD-TYPE                                                1
D435V8, multiclass
                                                  clus
vv                                                 NDUFAF2 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                            3
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                          0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA               1
                                                  clus
vv                                                 NDUFAF2 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                             62
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                            4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                 1
D435V9, continuous
[1] "Remove cluster labels:" "NDUFAF2 MUTATED"       
clus
  NDUFAF2 MUTATED NDUFAF2 WILD-TYPE 
                1                21 
       TCGA-F2-6880        TCGA-FB-A4P5        TCGA-FB-A4P6        TCGA-FB-A5VM 
"NDUFAF2 WILD-TYPE" "NDUFAF2 WILD-TYPE" "NDUFAF2 WILD-TYPE" "NDUFAF2 WILD-TYPE" 
       TCGA-FB-A78T        TCGA-H6-8124        TCGA-H6-A45N        TCGA-H8-A6C1 
"NDUFAF2 WILD-TYPE" "NDUFAF2 WILD-TYPE" "NDUFAF2 WILD-TYPE" "NDUFAF2 WILD-TYPE" 
       TCGA-IB-7644        TCGA-IB-7649        TCGA-IB-7651        TCGA-IB-7885 
"NDUFAF2 WILD-TYPE" "NDUFAF2 WILD-TYPE" "NDUFAF2 WILD-TYPE" "NDUFAF2 WILD-TYPE" 
       TCGA-IB-7886        TCGA-IB-7887        TCGA-IB-7891        TCGA-IB-8126 
"NDUFAF2 WILD-TYPE" "NDUFAF2 WILD-TYPE" "NDUFAF2 WILD-TYPE" "NDUFAF2 WILD-TYPE" 
       TCGA-IB-8127        TCGA-IB-A5SS        TCGA-IB-A6UG        TCGA-LB-A7SX 
"NDUFAF2 WILD-TYPE" "NDUFAF2 WILD-TYPE" "NDUFAF2 WILD-TYPE" "NDUFAF2 WILD-TYPE" 
       TCGA-OE-A75W 
"NDUFAF2 WILD-TYPE" 
D435V10, continuous
[1] "Remove cluster labels:" "NDUFAF2 MUTATED"       
clus
  NDUFAF2 MUTATED NDUFAF2 WILD-TYPE 
                1                18 
       TCGA-FB-A4P5        TCGA-FB-A4P6        TCGA-FB-A5VM        TCGA-FB-A78T 
"NDUFAF2 WILD-TYPE" "NDUFAF2 WILD-TYPE" "NDUFAF2 WILD-TYPE" "NDUFAF2 WILD-TYPE" 
       TCGA-H6-8124        TCGA-H8-A6C1        TCGA-IB-7644        TCGA-IB-7649 
"NDUFAF2 WILD-TYPE" "NDUFAF2 WILD-TYPE" "NDUFAF2 WILD-TYPE" "NDUFAF2 WILD-TYPE" 
       TCGA-IB-7651        TCGA-IB-7885        TCGA-IB-7886        TCGA-IB-7891 
"NDUFAF2 WILD-TYPE" "NDUFAF2 WILD-TYPE" "NDUFAF2 WILD-TYPE" "NDUFAF2 WILD-TYPE" 
       TCGA-IB-8126        TCGA-IB-8127        TCGA-IB-A5SS        TCGA-IB-A6UG 
"NDUFAF2 WILD-TYPE" "NDUFAF2 WILD-TYPE" "NDUFAF2 WILD-TYPE" "NDUFAF2 WILD-TYPE" 
       TCGA-LB-A7SX        TCGA-OE-A75W 
"NDUFAF2 WILD-TYPE" "NDUFAF2 WILD-TYPE" 
                   vv
clus                R0 R1 RX
  NDUFAF2 MUTATED    4  0  0
  NDUFAF2 WILD-TYPE 38 24  2
D435V11, multiclass
    clus
vv   NDUFAF2 MUTATED NDUFAF2 WILD-TYPE
  R0               4                38
  R1               0                24
  RX               0                 2
D435V12, continuous

Clustering(436) Variable = STAM MUTATION ANALYSIS
D436V1, survival
                sevent
clus2             0  1
  STAM MUTATED    1  2
  STAM WILD-TYPE 39 27
  STAM MUTATED STAM WILD-TYPE 
             3             66 
  STAM MUTATED STAM WILD-TYPE 
             2             27 
$`STAM MUTATED`
TCGA-HZ-A49G TCGA-IB-7651 TCGA-IB-7897 
        0.76        19.82        15.98 

$`STAM WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P5 TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR 
        0.13        11.93        12.66         2.47         0.03         5.46 
TCGA-FZ-5920 TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 
        2.01        36.20        20.81        12.89         7.66        13.02 
TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 
        7.89         0.92         0.66         0.13         0.26        12.13 
TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 
       11.87         0.26         0.62         0.79         0.69         3.95 
TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49H TCGA-HZ-A4BH 
        0.92         0.53         0.16         2.99         0.95         6.38 
TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 
        1.51        11.41        49.38         4.77        21.90        15.35 
TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 
       15.65        27.98         4.04         3.62        43.79        15.81 
TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO 
       19.66        16.04         3.85         0.56        17.16        10.82 
TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX 
        9.86         7.20        15.12         0.26         1.35         4.18 
TCGA-OE-A75W TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
        3.62         8.12        13.68        16.80        14.14        18.67 

  STAM MUTATED STAM WILD-TYPE 
          0.76           0.03 
  STAM MUTATED STAM WILD-TYPE 
         19.82          49.38 
  STAM MUTATED STAM WILD-TYPE 
         15.98           7.43 
[1] "0.8 - 19.8 (16.0)" "0.0 - 49.4 (7.4)" 
    TCGA-F2-6879     TCGA-F2-6880     TCGA-F2-7273     TCGA-F2-7276 
"STAM WILD-TYPE" "STAM WILD-TYPE" "STAM WILD-TYPE" "STAM WILD-TYPE" 
    TCGA-F2-A44G     TCGA-F2-A44H     TCGA-FB-A4P5     TCGA-FB-A4P6 
"STAM WILD-TYPE" "STAM WILD-TYPE" "STAM WILD-TYPE" "STAM WILD-TYPE" 
    TCGA-FB-A545     TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-FB-A7DR 
"STAM WILD-TYPE" "STAM WILD-TYPE" "STAM WILD-TYPE" "STAM WILD-TYPE" 
    TCGA-FZ-5920     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-H6-8124 
"STAM WILD-TYPE" "STAM WILD-TYPE" "STAM WILD-TYPE" "STAM WILD-TYPE" 
    TCGA-H6-A45N     TCGA-H8-A6C1     TCGA-HZ-7289     TCGA-HZ-7918 
"STAM WILD-TYPE" "STAM WILD-TYPE" "STAM WILD-TYPE" "STAM WILD-TYPE" 
    TCGA-HZ-7919     TCGA-HZ-7922     TCGA-HZ-7923     TCGA-HZ-7924 
"STAM WILD-TYPE" "STAM WILD-TYPE" "STAM WILD-TYPE" "STAM WILD-TYPE" 
    TCGA-HZ-7925     TCGA-HZ-7926     TCGA-HZ-8001     TCGA-HZ-8002 
"STAM WILD-TYPE" "STAM WILD-TYPE" "STAM WILD-TYPE" "STAM WILD-TYPE" 
    TCGA-HZ-8003     TCGA-HZ-8005     TCGA-HZ-8315     TCGA-HZ-8317 
"STAM WILD-TYPE" "STAM WILD-TYPE" "STAM WILD-TYPE" "STAM WILD-TYPE" 
    TCGA-HZ-8636     TCGA-HZ-8638     TCGA-HZ-A49G     TCGA-HZ-A49H 
"STAM WILD-TYPE" "STAM WILD-TYPE"   "STAM MUTATED" "STAM WILD-TYPE" 
    TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-IB-7644     TCGA-IB-7645 
"STAM WILD-TYPE" "STAM WILD-TYPE" "STAM WILD-TYPE" "STAM WILD-TYPE" 
    TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7651 
"STAM WILD-TYPE" "STAM WILD-TYPE" "STAM WILD-TYPE"   "STAM MUTATED" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887 
"STAM WILD-TYPE" "STAM WILD-TYPE" "STAM WILD-TYPE" "STAM WILD-TYPE" 
    TCGA-IB-7888     TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891 
"STAM WILD-TYPE" "STAM WILD-TYPE" "STAM WILD-TYPE" "STAM WILD-TYPE" 
    TCGA-IB-7893     TCGA-IB-7897     TCGA-IB-8126     TCGA-IB-8127 
"STAM WILD-TYPE"   "STAM MUTATED" "STAM WILD-TYPE" "STAM WILD-TYPE" 
    TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS 
"STAM WILD-TYPE" "STAM WILD-TYPE" "STAM WILD-TYPE" "STAM WILD-TYPE" 
    TCGA-IB-A5ST     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
"STAM WILD-TYPE" "STAM WILD-TYPE" "STAM WILD-TYPE" "STAM WILD-TYPE" 
    TCGA-PZ-A5RE     TCGA-Q3-A5QY     TCGA-US-A779     TCGA-US-A77E 
"STAM WILD-TYPE" "STAM WILD-TYPE" "STAM WILD-TYPE" "STAM WILD-TYPE" 
    TCGA-US-A77J 
"STAM WILD-TYPE" 
    TCGA-F2-6879     TCGA-F2-6880     TCGA-F2-7273     TCGA-F2-7276 
"STAM WILD-TYPE" "STAM WILD-TYPE" "STAM WILD-TYPE" "STAM WILD-TYPE" 
    TCGA-F2-A44G     TCGA-F2-A44H     TCGA-FB-A4P5     TCGA-FB-A4P6 
"STAM WILD-TYPE" "STAM WILD-TYPE" "STAM WILD-TYPE" "STAM WILD-TYPE" 
    TCGA-FB-A545     TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-FB-A7DR 
"STAM WILD-TYPE" "STAM WILD-TYPE" "STAM WILD-TYPE" "STAM WILD-TYPE" 
    TCGA-FZ-5920     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-H6-8124 
"STAM WILD-TYPE" "STAM WILD-TYPE" "STAM WILD-TYPE" "STAM WILD-TYPE" 
    TCGA-H6-A45N     TCGA-H8-A6C1     TCGA-HZ-7289     TCGA-HZ-7918 
"STAM WILD-TYPE" "STAM WILD-TYPE" "STAM WILD-TYPE" "STAM WILD-TYPE" 
    TCGA-HZ-7919     TCGA-HZ-7922     TCGA-HZ-7923     TCGA-HZ-7924 
"STAM WILD-TYPE" "STAM WILD-TYPE" "STAM WILD-TYPE" "STAM WILD-TYPE" 
    TCGA-HZ-7925     TCGA-HZ-7926     TCGA-HZ-8001     TCGA-HZ-8002 
"STAM WILD-TYPE" "STAM WILD-TYPE" "STAM WILD-TYPE" "STAM WILD-TYPE" 
    TCGA-HZ-8003     TCGA-HZ-8005     TCGA-HZ-8315     TCGA-HZ-8317 
"STAM WILD-TYPE" "STAM WILD-TYPE" "STAM WILD-TYPE" "STAM WILD-TYPE" 
    TCGA-HZ-8636     TCGA-HZ-8638     TCGA-HZ-A49G     TCGA-HZ-A49H 
"STAM WILD-TYPE" "STAM WILD-TYPE"   "STAM MUTATED" "STAM WILD-TYPE" 
    TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-IB-7644     TCGA-IB-7645 
"STAM WILD-TYPE" "STAM WILD-TYPE" "STAM WILD-TYPE" "STAM WILD-TYPE" 
    TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7651 
"STAM WILD-TYPE" "STAM WILD-TYPE" "STAM WILD-TYPE"   "STAM MUTATED" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887 
"STAM WILD-TYPE" "STAM WILD-TYPE" "STAM WILD-TYPE" "STAM WILD-TYPE" 
    TCGA-IB-7888     TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891 
"STAM WILD-TYPE" "STAM WILD-TYPE" "STAM WILD-TYPE" "STAM WILD-TYPE" 
    TCGA-IB-7893     TCGA-IB-7897     TCGA-IB-8126     TCGA-IB-8127 
"STAM WILD-TYPE"   "STAM MUTATED" "STAM WILD-TYPE" "STAM WILD-TYPE" 
    TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS 
"STAM WILD-TYPE" "STAM WILD-TYPE" "STAM WILD-TYPE" "STAM WILD-TYPE" 
    TCGA-IB-A5ST     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
"STAM WILD-TYPE" "STAM WILD-TYPE" "STAM WILD-TYPE" "STAM WILD-TYPE" 
    TCGA-PZ-A5RE     TCGA-Q3-A5QY     TCGA-US-A779     TCGA-US-A77E 
"STAM WILD-TYPE" "STAM WILD-TYPE" "STAM WILD-TYPE" "STAM WILD-TYPE" 
    TCGA-US-A77J 
"STAM WILD-TYPE" 
    TCGA-F2-6879     TCGA-F2-6880     TCGA-F2-7273     TCGA-F2-7276 
"STAM WILD-TYPE" "STAM WILD-TYPE" "STAM WILD-TYPE" "STAM WILD-TYPE" 
    TCGA-F2-A44G     TCGA-F2-A44H     TCGA-FB-A4P5     TCGA-FB-A4P6 
"STAM WILD-TYPE" "STAM WILD-TYPE" "STAM WILD-TYPE" "STAM WILD-TYPE" 
    TCGA-FB-A545     TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-FB-A7DR 
"STAM WILD-TYPE" "STAM WILD-TYPE" "STAM WILD-TYPE" "STAM WILD-TYPE" 
    TCGA-FZ-5920     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-H6-8124 
"STAM WILD-TYPE" "STAM WILD-TYPE" "STAM WILD-TYPE" "STAM WILD-TYPE" 
    TCGA-H6-A45N     TCGA-H8-A6C1     TCGA-HZ-7289     TCGA-HZ-7918 
"STAM WILD-TYPE" "STAM WILD-TYPE" "STAM WILD-TYPE" "STAM WILD-TYPE" 
    TCGA-HZ-7919     TCGA-HZ-7922     TCGA-HZ-7923     TCGA-HZ-7924 
"STAM WILD-TYPE" "STAM WILD-TYPE" "STAM WILD-TYPE" "STAM WILD-TYPE" 
    TCGA-HZ-7925     TCGA-HZ-7926     TCGA-HZ-8001     TCGA-HZ-8002 
"STAM WILD-TYPE" "STAM WILD-TYPE" "STAM WILD-TYPE" "STAM WILD-TYPE" 
    TCGA-HZ-8003     TCGA-HZ-8005     TCGA-HZ-8315     TCGA-HZ-8317 
"STAM WILD-TYPE" "STAM WILD-TYPE" "STAM WILD-TYPE" "STAM WILD-TYPE" 
    TCGA-HZ-8636     TCGA-HZ-8638     TCGA-HZ-A49G     TCGA-HZ-A49H 
"STAM WILD-TYPE" "STAM WILD-TYPE"   "STAM MUTATED" "STAM WILD-TYPE" 
    TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-IB-7644     TCGA-IB-7645 
"STAM WILD-TYPE" "STAM WILD-TYPE" "STAM WILD-TYPE" "STAM WILD-TYPE" 
    TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7651 
"STAM WILD-TYPE" "STAM WILD-TYPE" "STAM WILD-TYPE"   "STAM MUTATED" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887 
"STAM WILD-TYPE" "STAM WILD-TYPE" "STAM WILD-TYPE" "STAM WILD-TYPE" 
    TCGA-IB-7888     TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891 
"STAM WILD-TYPE" "STAM WILD-TYPE" "STAM WILD-TYPE" "STAM WILD-TYPE" 
    TCGA-IB-7893     TCGA-IB-7897     TCGA-IB-8126     TCGA-IB-8127 
"STAM WILD-TYPE"   "STAM MUTATED" "STAM WILD-TYPE" "STAM WILD-TYPE" 
    TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS 
"STAM WILD-TYPE" "STAM WILD-TYPE" "STAM WILD-TYPE" "STAM WILD-TYPE" 
    TCGA-IB-A5ST     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
"STAM WILD-TYPE" "STAM WILD-TYPE" "STAM WILD-TYPE" "STAM WILD-TYPE" 
    TCGA-PZ-A5RE     TCGA-Q3-A5QY     TCGA-US-A779     TCGA-US-A77E 
"STAM WILD-TYPE" "STAM WILD-TYPE" "STAM WILD-TYPE" "STAM WILD-TYPE" 
    TCGA-US-A77J 
"STAM WILD-TYPE" 
[1] "hr=" "1.1"
D436V2, continuous
                vv
clus             STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  STAM MUTATED          0        0         0         4         0        0
  STAM WILD-TYPE        1        4        11        47         2        3
D436V3, multiclass
                vv
clus             T1+T2 T3+T4
  STAM MUTATED       1     3
  STAM WILD-TYPE     5    63
D436V4, multiclass
       clus
vv      STAM MUTATED STAM WILD-TYPE
  T1+T2            1              5
  T3+T4            3             63
D436V5, binary
                cls
clus              0  1
  STAM MUTATED    0  4
  STAM WILD-TYPE 17 50
[1] "tbl2"
                cls
clus             [,1] [,2]
  STAM MUTATED      0    4
  STAM WILD-TYPE   17   50
   clus
vv  STAM MUTATED STAM WILD-TYPE
  0            0             17
  1            4             50
                vv
clus             M0 M1 MX
  STAM MUTATED    2  0  2
  STAM WILD-TYPE 37  3 28
D436V6, multiclass
    clus
vv   STAM MUTATED STAM WILD-TYPE
  M0            2             37
  M1            0              3
  MX            2             28
D436V7, binary
                cls
clus              0  1
  STAM MUTATED    3  1
  STAM WILD-TYPE 33 35
[1] "tbl2"
                cls
clus             [,1] [,2]
  STAM MUTATED      3    1
  STAM WILD-TYPE   33   35
        clus
vv       STAM MUTATED STAM WILD-TYPE
  FEMALE            3             33
  MALE              1             35
                vv
clus             PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  STAM MUTATED                                     4
  STAM WILD-TYPE                                  61
                vv
clus             PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  STAM MUTATED                                       0
  STAM WILD-TYPE                                     4
                vv
clus             PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  STAM MUTATED                                                  0
  STAM WILD-TYPE                                                2
D436V8, multiclass
                                                  clus
vv                                                 STAM MUTATED STAM WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                         4             61
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                       0              4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA            0              2
D436V9, continuous
[1] "Remove cluster labels:" "STAM MUTATED"          
clus
  STAM MUTATED STAM WILD-TYPE 
             1             21 
    TCGA-F2-6880     TCGA-FB-A4P5     TCGA-FB-A4P6     TCGA-FB-A5VM 
"STAM WILD-TYPE" "STAM WILD-TYPE" "STAM WILD-TYPE" "STAM WILD-TYPE" 
    TCGA-FB-A78T     TCGA-FB-A7DR     TCGA-H6-8124     TCGA-H6-A45N 
"STAM WILD-TYPE" "STAM WILD-TYPE" "STAM WILD-TYPE" "STAM WILD-TYPE" 
    TCGA-H8-A6C1     TCGA-IB-7644     TCGA-IB-7649     TCGA-IB-7885 
"STAM WILD-TYPE" "STAM WILD-TYPE" "STAM WILD-TYPE" "STAM WILD-TYPE" 
    TCGA-IB-7886     TCGA-IB-7887     TCGA-IB-7891     TCGA-IB-8126 
"STAM WILD-TYPE" "STAM WILD-TYPE" "STAM WILD-TYPE" "STAM WILD-TYPE" 
    TCGA-IB-8127     TCGA-IB-A5SS     TCGA-IB-A6UG     TCGA-LB-A7SX 
"STAM WILD-TYPE" "STAM WILD-TYPE" "STAM WILD-TYPE" "STAM WILD-TYPE" 
    TCGA-OE-A75W 
"STAM WILD-TYPE" 
D436V10, continuous
[1] "Remove cluster labels:" "STAM MUTATED"          
clus
  STAM MUTATED STAM WILD-TYPE 
             1             18 
    TCGA-FB-A4P5     TCGA-FB-A4P6     TCGA-FB-A5VM     TCGA-FB-A78T 
"STAM WILD-TYPE" "STAM WILD-TYPE" "STAM WILD-TYPE" "STAM WILD-TYPE" 
    TCGA-FB-A7DR     TCGA-H6-8124     TCGA-H8-A6C1     TCGA-IB-7644 
"STAM WILD-TYPE" "STAM WILD-TYPE" "STAM WILD-TYPE" "STAM WILD-TYPE" 
    TCGA-IB-7649     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7891 
"STAM WILD-TYPE" "STAM WILD-TYPE" "STAM WILD-TYPE" "STAM WILD-TYPE" 
    TCGA-IB-8126     TCGA-IB-8127     TCGA-IB-A5SS     TCGA-IB-A6UG 
"STAM WILD-TYPE" "STAM WILD-TYPE" "STAM WILD-TYPE" "STAM WILD-TYPE" 
    TCGA-LB-A7SX     TCGA-OE-A75W 
"STAM WILD-TYPE" "STAM WILD-TYPE" 
                vv
clus             R0 R1 RX
  STAM MUTATED    2  2  0
  STAM WILD-TYPE 40 22  2
D436V11, multiclass
    clus
vv   STAM MUTATED STAM WILD-TYPE
  R0            2             40
  R1            2             22
  RX            0              2
D436V12, continuous

Clustering(437) Variable = KIAA1407 MUTATION ANALYSIS
D437V1, survival
                    sevent
clus2                 0  1
  KIAA1407 MUTATED    1  2
  KIAA1407 WILD-TYPE 39 27
  KIAA1407 MUTATED KIAA1407 WILD-TYPE 
                 3                 66 
  KIAA1407 MUTATED KIAA1407 WILD-TYPE 
                 2                 27 
$`KIAA1407 MUTATED`
TCGA-HZ-7922 TCGA-IB-7651 TCGA-IB-A6UG 
        0.13        19.82         1.35 

$`KIAA1407 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P5 TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR 
        0.13        11.93        12.66         2.47         0.03         5.46 
TCGA-FZ-5920 TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 
        2.01        36.20        20.81        12.89         7.66        13.02 
TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 
        7.89         0.92         0.66         0.26        12.13        11.87 
TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 
        0.26         0.62         0.79         0.69         3.95         0.92 
TCGA-HZ-8317 TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH 
        0.53         0.16         2.99         0.76         0.95         6.38 
TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 
        1.51        11.41        49.38         4.77        21.90        15.35 
TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 
       15.65        27.98         4.04         3.62        43.79        15.81 
TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-8127 
       19.66        16.04         3.85        15.98         0.56        17.16 
TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST TCGA-LB-A7SX 
       10.82         9.86         7.20        15.12         0.26         4.18 
TCGA-OE-A75W TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
        3.62         8.12        13.68        16.80        14.14        18.67 

  KIAA1407 MUTATED KIAA1407 WILD-TYPE 
              0.13               0.03 
  KIAA1407 MUTATED KIAA1407 WILD-TYPE 
             19.82              49.38 
  KIAA1407 MUTATED KIAA1407 WILD-TYPE 
             1.350              7.775 
[1] "0.1 - 19.8 (1.4)" "0.0 - 49.4 (7.8)"
        TCGA-F2-6879         TCGA-F2-6880         TCGA-F2-7273 
"KIAA1407 WILD-TYPE" "KIAA1407 WILD-TYPE" "KIAA1407 WILD-TYPE" 
        TCGA-F2-7276         TCGA-F2-A44G         TCGA-F2-A44H 
"KIAA1407 WILD-TYPE" "KIAA1407 WILD-TYPE" "KIAA1407 WILD-TYPE" 
        TCGA-FB-A4P5         TCGA-FB-A4P6         TCGA-FB-A545 
"KIAA1407 WILD-TYPE" "KIAA1407 WILD-TYPE" "KIAA1407 WILD-TYPE" 
        TCGA-FB-A5VM         TCGA-FB-A78T         TCGA-FB-A7DR 
"KIAA1407 WILD-TYPE" "KIAA1407 WILD-TYPE" "KIAA1407 WILD-TYPE" 
        TCGA-FZ-5920         TCGA-FZ-5922         TCGA-FZ-5923 
"KIAA1407 WILD-TYPE" "KIAA1407 WILD-TYPE" "KIAA1407 WILD-TYPE" 
        TCGA-H6-8124         TCGA-H6-A45N         TCGA-H8-A6C1 
"KIAA1407 WILD-TYPE" "KIAA1407 WILD-TYPE" "KIAA1407 WILD-TYPE" 
        TCGA-HZ-7289         TCGA-HZ-7918         TCGA-HZ-7919 
"KIAA1407 WILD-TYPE" "KIAA1407 WILD-TYPE" "KIAA1407 WILD-TYPE" 
        TCGA-HZ-7922         TCGA-HZ-7923         TCGA-HZ-7924 
  "KIAA1407 MUTATED" "KIAA1407 WILD-TYPE" "KIAA1407 WILD-TYPE" 
        TCGA-HZ-7925         TCGA-HZ-7926         TCGA-HZ-8001 
"KIAA1407 WILD-TYPE" "KIAA1407 WILD-TYPE" "KIAA1407 WILD-TYPE" 
        TCGA-HZ-8002         TCGA-HZ-8003         TCGA-HZ-8005 
"KIAA1407 WILD-TYPE" "KIAA1407 WILD-TYPE" "KIAA1407 WILD-TYPE" 
        TCGA-HZ-8315         TCGA-HZ-8317         TCGA-HZ-8636 
"KIAA1407 WILD-TYPE" "KIAA1407 WILD-TYPE" "KIAA1407 WILD-TYPE" 
        TCGA-HZ-8638         TCGA-HZ-A49G         TCGA-HZ-A49H 
"KIAA1407 WILD-TYPE" "KIAA1407 WILD-TYPE" "KIAA1407 WILD-TYPE" 
        TCGA-HZ-A4BH         TCGA-HZ-A4BK         TCGA-IB-7644 
"KIAA1407 WILD-TYPE" "KIAA1407 WILD-TYPE" "KIAA1407 WILD-TYPE" 
        TCGA-IB-7645         TCGA-IB-7646         TCGA-IB-7647 
"KIAA1407 WILD-TYPE" "KIAA1407 WILD-TYPE" "KIAA1407 WILD-TYPE" 
        TCGA-IB-7649         TCGA-IB-7651         TCGA-IB-7652 
"KIAA1407 WILD-TYPE"   "KIAA1407 MUTATED" "KIAA1407 WILD-TYPE" 
        TCGA-IB-7885         TCGA-IB-7886         TCGA-IB-7887 
"KIAA1407 WILD-TYPE" "KIAA1407 WILD-TYPE" "KIAA1407 WILD-TYPE" 
        TCGA-IB-7888         TCGA-IB-7889         TCGA-IB-7890 
"KIAA1407 WILD-TYPE" "KIAA1407 WILD-TYPE" "KIAA1407 WILD-TYPE" 
        TCGA-IB-7891         TCGA-IB-7893         TCGA-IB-7897 
"KIAA1407 WILD-TYPE" "KIAA1407 WILD-TYPE" "KIAA1407 WILD-TYPE" 
        TCGA-IB-8126         TCGA-IB-8127         TCGA-IB-A5SO 
"KIAA1407 WILD-TYPE" "KIAA1407 WILD-TYPE" "KIAA1407 WILD-TYPE" 
        TCGA-IB-A5SP         TCGA-IB-A5SQ         TCGA-IB-A5SS 
"KIAA1407 WILD-TYPE" "KIAA1407 WILD-TYPE" "KIAA1407 WILD-TYPE" 
        TCGA-IB-A5ST         TCGA-IB-A6UG         TCGA-LB-A7SX 
"KIAA1407 WILD-TYPE"   "KIAA1407 MUTATED" "KIAA1407 WILD-TYPE" 
        TCGA-OE-A75W         TCGA-PZ-A5RE         TCGA-Q3-A5QY 
"KIAA1407 WILD-TYPE" "KIAA1407 WILD-TYPE" "KIAA1407 WILD-TYPE" 
        TCGA-US-A779         TCGA-US-A77E         TCGA-US-A77J 
"KIAA1407 WILD-TYPE" "KIAA1407 WILD-TYPE" "KIAA1407 WILD-TYPE" 
        TCGA-F2-6879         TCGA-F2-6880         TCGA-F2-7273 
"KIAA1407 WILD-TYPE" "KIAA1407 WILD-TYPE" "KIAA1407 WILD-TYPE" 
        TCGA-F2-7276         TCGA-F2-A44G         TCGA-F2-A44H 
"KIAA1407 WILD-TYPE" "KIAA1407 WILD-TYPE" "KIAA1407 WILD-TYPE" 
        TCGA-FB-A4P5         TCGA-FB-A4P6         TCGA-FB-A545 
"KIAA1407 WILD-TYPE" "KIAA1407 WILD-TYPE" "KIAA1407 WILD-TYPE" 
        TCGA-FB-A5VM         TCGA-FB-A78T         TCGA-FB-A7DR 
"KIAA1407 WILD-TYPE" "KIAA1407 WILD-TYPE" "KIAA1407 WILD-TYPE" 
        TCGA-FZ-5920         TCGA-FZ-5922         TCGA-FZ-5923 
"KIAA1407 WILD-TYPE" "KIAA1407 WILD-TYPE" "KIAA1407 WILD-TYPE" 
        TCGA-H6-8124         TCGA-H6-A45N         TCGA-H8-A6C1 
"KIAA1407 WILD-TYPE" "KIAA1407 WILD-TYPE" "KIAA1407 WILD-TYPE" 
        TCGA-HZ-7289         TCGA-HZ-7918         TCGA-HZ-7919 
"KIAA1407 WILD-TYPE" "KIAA1407 WILD-TYPE" "KIAA1407 WILD-TYPE" 
        TCGA-HZ-7922         TCGA-HZ-7923         TCGA-HZ-7924 
  "KIAA1407 MUTATED" "KIAA1407 WILD-TYPE" "KIAA1407 WILD-TYPE" 
        TCGA-HZ-7925         TCGA-HZ-7926         TCGA-HZ-8001 
"KIAA1407 WILD-TYPE" "KIAA1407 WILD-TYPE" "KIAA1407 WILD-TYPE" 
        TCGA-HZ-8002         TCGA-HZ-8003         TCGA-HZ-8005 
"KIAA1407 WILD-TYPE" "KIAA1407 WILD-TYPE" "KIAA1407 WILD-TYPE" 
        TCGA-HZ-8315         TCGA-HZ-8317         TCGA-HZ-8636 
"KIAA1407 WILD-TYPE" "KIAA1407 WILD-TYPE" "KIAA1407 WILD-TYPE" 
        TCGA-HZ-8638         TCGA-HZ-A49G         TCGA-HZ-A49H 
"KIAA1407 WILD-TYPE" "KIAA1407 WILD-TYPE" "KIAA1407 WILD-TYPE" 
        TCGA-HZ-A4BH         TCGA-HZ-A4BK         TCGA-IB-7644 
"KIAA1407 WILD-TYPE" "KIAA1407 WILD-TYPE" "KIAA1407 WILD-TYPE" 
        TCGA-IB-7645         TCGA-IB-7646         TCGA-IB-7647 
"KIAA1407 WILD-TYPE" "KIAA1407 WILD-TYPE" "KIAA1407 WILD-TYPE" 
        TCGA-IB-7649         TCGA-IB-7651         TCGA-IB-7652 
"KIAA1407 WILD-TYPE"   "KIAA1407 MUTATED" "KIAA1407 WILD-TYPE" 
        TCGA-IB-7885         TCGA-IB-7886         TCGA-IB-7887 
"KIAA1407 WILD-TYPE" "KIAA1407 WILD-TYPE" "KIAA1407 WILD-TYPE" 
        TCGA-IB-7888         TCGA-IB-7889         TCGA-IB-7890 
"KIAA1407 WILD-TYPE" "KIAA1407 WILD-TYPE" "KIAA1407 WILD-TYPE" 
        TCGA-IB-7891         TCGA-IB-7893         TCGA-IB-7897 
"KIAA1407 WILD-TYPE" "KIAA1407 WILD-TYPE" "KIAA1407 WILD-TYPE" 
        TCGA-IB-8126         TCGA-IB-8127         TCGA-IB-A5SO 
"KIAA1407 WILD-TYPE" "KIAA1407 WILD-TYPE" "KIAA1407 WILD-TYPE" 
        TCGA-IB-A5SP         TCGA-IB-A5SQ         TCGA-IB-A5SS 
"KIAA1407 WILD-TYPE" "KIAA1407 WILD-TYPE" "KIAA1407 WILD-TYPE" 
        TCGA-IB-A5ST         TCGA-IB-A6UG         TCGA-LB-A7SX 
"KIAA1407 WILD-TYPE"   "KIAA1407 MUTATED" "KIAA1407 WILD-TYPE" 
        TCGA-OE-A75W         TCGA-PZ-A5RE         TCGA-Q3-A5QY 
"KIAA1407 WILD-TYPE" "KIAA1407 WILD-TYPE" "KIAA1407 WILD-TYPE" 
        TCGA-US-A779         TCGA-US-A77E         TCGA-US-A77J 
"KIAA1407 WILD-TYPE" "KIAA1407 WILD-TYPE" "KIAA1407 WILD-TYPE" 
        TCGA-F2-6879         TCGA-F2-6880         TCGA-F2-7273 
"KIAA1407 WILD-TYPE" "KIAA1407 WILD-TYPE" "KIAA1407 WILD-TYPE" 
        TCGA-F2-7276         TCGA-F2-A44G         TCGA-F2-A44H 
"KIAA1407 WILD-TYPE" "KIAA1407 WILD-TYPE" "KIAA1407 WILD-TYPE" 
        TCGA-FB-A4P5         TCGA-FB-A4P6         TCGA-FB-A545 
"KIAA1407 WILD-TYPE" "KIAA1407 WILD-TYPE" "KIAA1407 WILD-TYPE" 
        TCGA-FB-A5VM         TCGA-FB-A78T         TCGA-FB-A7DR 
"KIAA1407 WILD-TYPE" "KIAA1407 WILD-TYPE" "KIAA1407 WILD-TYPE" 
        TCGA-FZ-5920         TCGA-FZ-5922         TCGA-FZ-5923 
"KIAA1407 WILD-TYPE" "KIAA1407 WILD-TYPE" "KIAA1407 WILD-TYPE" 
        TCGA-H6-8124         TCGA-H6-A45N         TCGA-H8-A6C1 
"KIAA1407 WILD-TYPE" "KIAA1407 WILD-TYPE" "KIAA1407 WILD-TYPE" 
        TCGA-HZ-7289         TCGA-HZ-7918         TCGA-HZ-7919 
"KIAA1407 WILD-TYPE" "KIAA1407 WILD-TYPE" "KIAA1407 WILD-TYPE" 
        TCGA-HZ-7922         TCGA-HZ-7923         TCGA-HZ-7924 
  "KIAA1407 MUTATED" "KIAA1407 WILD-TYPE" "KIAA1407 WILD-TYPE" 
        TCGA-HZ-7925         TCGA-HZ-7926         TCGA-HZ-8001 
"KIAA1407 WILD-TYPE" "KIAA1407 WILD-TYPE" "KIAA1407 WILD-TYPE" 
        TCGA-HZ-8002         TCGA-HZ-8003         TCGA-HZ-8005 
"KIAA1407 WILD-TYPE" "KIAA1407 WILD-TYPE" "KIAA1407 WILD-TYPE" 
        TCGA-HZ-8315         TCGA-HZ-8317         TCGA-HZ-8636 
"KIAA1407 WILD-TYPE" "KIAA1407 WILD-TYPE" "KIAA1407 WILD-TYPE" 
        TCGA-HZ-8638         TCGA-HZ-A49G         TCGA-HZ-A49H 
"KIAA1407 WILD-TYPE" "KIAA1407 WILD-TYPE" "KIAA1407 WILD-TYPE" 
        TCGA-HZ-A4BH         TCGA-HZ-A4BK         TCGA-IB-7644 
"KIAA1407 WILD-TYPE" "KIAA1407 WILD-TYPE" "KIAA1407 WILD-TYPE" 
        TCGA-IB-7645         TCGA-IB-7646         TCGA-IB-7647 
"KIAA1407 WILD-TYPE" "KIAA1407 WILD-TYPE" "KIAA1407 WILD-TYPE" 
        TCGA-IB-7649         TCGA-IB-7651         TCGA-IB-7652 
"KIAA1407 WILD-TYPE"   "KIAA1407 MUTATED" "KIAA1407 WILD-TYPE" 
        TCGA-IB-7885         TCGA-IB-7886         TCGA-IB-7887 
"KIAA1407 WILD-TYPE" "KIAA1407 WILD-TYPE" "KIAA1407 WILD-TYPE" 
        TCGA-IB-7888         TCGA-IB-7889         TCGA-IB-7890 
"KIAA1407 WILD-TYPE" "KIAA1407 WILD-TYPE" "KIAA1407 WILD-TYPE" 
        TCGA-IB-7891         TCGA-IB-7893         TCGA-IB-7897 
"KIAA1407 WILD-TYPE" "KIAA1407 WILD-TYPE" "KIAA1407 WILD-TYPE" 
        TCGA-IB-8126         TCGA-IB-8127         TCGA-IB-A5SO 
"KIAA1407 WILD-TYPE" "KIAA1407 WILD-TYPE" "KIAA1407 WILD-TYPE" 
        TCGA-IB-A5SP         TCGA-IB-A5SQ         TCGA-IB-A5SS 
"KIAA1407 WILD-TYPE" "KIAA1407 WILD-TYPE" "KIAA1407 WILD-TYPE" 
        TCGA-IB-A5ST         TCGA-IB-A6UG         TCGA-LB-A7SX 
"KIAA1407 WILD-TYPE"   "KIAA1407 MUTATED" "KIAA1407 WILD-TYPE" 
        TCGA-OE-A75W         TCGA-PZ-A5RE         TCGA-Q3-A5QY 
"KIAA1407 WILD-TYPE" "KIAA1407 WILD-TYPE" "KIAA1407 WILD-TYPE" 
        TCGA-US-A779         TCGA-US-A77E         TCGA-US-A77J 
"KIAA1407 WILD-TYPE" "KIAA1407 WILD-TYPE" "KIAA1407 WILD-TYPE" 
[1] "hr=" "1.8"
D437V2, continuous
                    vv
clus                 STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  KIAA1407 MUTATED          0        0         0         3         0        0
  KIAA1407 WILD-TYPE        1        4        11        48         2        3
D437V3, multiclass
                    vv
clus                 T1+T2 T3+T4
  KIAA1407 MUTATED       0     3
  KIAA1407 WILD-TYPE     6    63
D437V4, multiclass
       clus
vv      KIAA1407 MUTATED KIAA1407 WILD-TYPE
  T1+T2                0                  6
  T3+T4                3                 63
D437V5, binary
                    cls
clus                  0  1
  KIAA1407 MUTATED    0  3
  KIAA1407 WILD-TYPE 17 51
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  KIAA1407 MUTATED      0    3
  KIAA1407 WILD-TYPE   17   51
   clus
vv  KIAA1407 MUTATED KIAA1407 WILD-TYPE
  0                0                 17
  1                3                 51
                    vv
clus                 M0 M1 MX
  KIAA1407 MUTATED    2  0  1
  KIAA1407 WILD-TYPE 37  3 29
D437V6, multiclass
    clus
vv   KIAA1407 MUTATED KIAA1407 WILD-TYPE
  M0                2                 37
  M1                0                  3
  MX                1                 29
D437V7, binary
                    cls
clus                  0  1
  KIAA1407 MUTATED    2  1
  KIAA1407 WILD-TYPE 34 35
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  KIAA1407 MUTATED      2    1
  KIAA1407 WILD-TYPE   34   35
        clus
vv       KIAA1407 MUTATED KIAA1407 WILD-TYPE
  FEMALE                2                 34
  MALE                  1                 35
                    vv
clus                 PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  KIAA1407 MUTATED                                     3
  KIAA1407 WILD-TYPE                                  62
                    vv
clus                 PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  KIAA1407 MUTATED                                       0
  KIAA1407 WILD-TYPE                                     4
                    vv
clus                 PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  KIAA1407 MUTATED                                                  0
  KIAA1407 WILD-TYPE                                                2
D437V8, multiclass
                                                  clus
vv                                                 KIAA1407 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                             3
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                           0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                0
                                                  clus
vv                                                 KIAA1407 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                              62
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                             4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                  2
D437V9, continuous
[1] "Remove cluster labels:" "KIAA1407 MUTATED"      
clus
  KIAA1407 MUTATED KIAA1407 WILD-TYPE 
                 2                 20 
        TCGA-F2-6880         TCGA-FB-A4P5         TCGA-FB-A4P6 
"KIAA1407 WILD-TYPE" "KIAA1407 WILD-TYPE" "KIAA1407 WILD-TYPE" 
        TCGA-FB-A5VM         TCGA-FB-A78T         TCGA-FB-A7DR 
"KIAA1407 WILD-TYPE" "KIAA1407 WILD-TYPE" "KIAA1407 WILD-TYPE" 
        TCGA-H6-8124         TCGA-H6-A45N         TCGA-H8-A6C1 
"KIAA1407 WILD-TYPE" "KIAA1407 WILD-TYPE" "KIAA1407 WILD-TYPE" 
        TCGA-IB-7644         TCGA-IB-7649         TCGA-IB-7885 
"KIAA1407 WILD-TYPE" "KIAA1407 WILD-TYPE" "KIAA1407 WILD-TYPE" 
        TCGA-IB-7886         TCGA-IB-7887         TCGA-IB-7891 
"KIAA1407 WILD-TYPE" "KIAA1407 WILD-TYPE" "KIAA1407 WILD-TYPE" 
        TCGA-IB-8126         TCGA-IB-8127         TCGA-IB-A5SS 
"KIAA1407 WILD-TYPE" "KIAA1407 WILD-TYPE" "KIAA1407 WILD-TYPE" 
        TCGA-LB-A7SX         TCGA-OE-A75W 
"KIAA1407 WILD-TYPE" "KIAA1407 WILD-TYPE" 
D437V10, continuous
[1] "Remove cluster labels:" "KIAA1407 MUTATED"      
clus
  KIAA1407 MUTATED KIAA1407 WILD-TYPE 
                 2                 17 
        TCGA-FB-A4P5         TCGA-FB-A4P6         TCGA-FB-A5VM 
"KIAA1407 WILD-TYPE" "KIAA1407 WILD-TYPE" "KIAA1407 WILD-TYPE" 
        TCGA-FB-A78T         TCGA-FB-A7DR         TCGA-H6-8124 
"KIAA1407 WILD-TYPE" "KIAA1407 WILD-TYPE" "KIAA1407 WILD-TYPE" 
        TCGA-H8-A6C1         TCGA-IB-7644         TCGA-IB-7649 
"KIAA1407 WILD-TYPE" "KIAA1407 WILD-TYPE" "KIAA1407 WILD-TYPE" 
        TCGA-IB-7885         TCGA-IB-7886         TCGA-IB-7891 
"KIAA1407 WILD-TYPE" "KIAA1407 WILD-TYPE" "KIAA1407 WILD-TYPE" 
        TCGA-IB-8126         TCGA-IB-8127         TCGA-IB-A5SS 
"KIAA1407 WILD-TYPE" "KIAA1407 WILD-TYPE" "KIAA1407 WILD-TYPE" 
        TCGA-LB-A7SX         TCGA-OE-A75W 
"KIAA1407 WILD-TYPE" "KIAA1407 WILD-TYPE" 
                    vv
clus                 R0 R1 RX
  KIAA1407 MUTATED    2  1  0
  KIAA1407 WILD-TYPE 40 23  2
D437V11, multiclass
    clus
vv   KIAA1407 MUTATED KIAA1407 WILD-TYPE
  R0                2                 40
  R1                1                 23
  RX                0                  2
D437V12, continuous

Clustering(438) Variable = PCDH15 MUTATION ANALYSIS
D438V1, survival
                  sevent
clus2               0  1
  PCDH15 MUTATED    6  2
  PCDH15 WILD-TYPE 34 27
  PCDH15 MUTATED PCDH15 WILD-TYPE 
               8               61 
  PCDH15 MUTATED PCDH15 WILD-TYPE 
               2               27 
$`PCDH15 MUTATED`
TCGA-FB-A545 TCGA-H8-A6C1 TCGA-HZ-8003 TCGA-HZ-8005 TCGA-IB-7651 TCGA-IB-A5SP 
       12.66        13.02         0.69         3.95        19.82         9.86 
TCGA-LB-A7SX TCGA-OE-A75W 
        4.18         3.62 

$`PCDH15 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P5 TCGA-FB-A4P6 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR TCGA-FZ-5920 
        0.13        11.93         2.47         0.03         5.46         2.01 
TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-HZ-7289 TCGA-HZ-7918 
       36.20        20.81        12.89         7.66         7.89         0.92 
TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 
        0.66         0.13         0.26        12.13        11.87         0.26 
TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8636 TCGA-HZ-8638 
        0.62         0.79         0.92         0.53         0.16         2.99 
TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7645 
        0.76         0.95         6.38         1.51        11.41        49.38 
TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7886 
        4.77        21.90        15.35        15.65        27.98         4.04 
TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-7893 
        3.62        43.79        15.81        19.66        16.04         3.85 
TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SQ TCGA-IB-A5SS 
       15.98         0.56        17.16        10.82         7.20        15.12 
TCGA-IB-A5ST TCGA-IB-A6UG TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E 
        0.26         1.35         8.12        13.68        16.80        14.14 
TCGA-US-A77J 
       18.67 

  PCDH15 MUTATED PCDH15 WILD-TYPE 
            0.69             0.03 
  PCDH15 MUTATED PCDH15 WILD-TYPE 
           19.82            49.38 
  PCDH15 MUTATED PCDH15 WILD-TYPE 
            7.02             7.66 
[1] "0.7 - 19.8 (7.0)" "0.0 - 49.4 (7.7)"
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
  "PCDH15 MUTATED" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
"PCDH15 WILD-TYPE"   "PCDH15 MUTATED" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
  "PCDH15 MUTATED"   "PCDH15 MUTATED" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE"   "PCDH15 MUTATED" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"PCDH15 WILD-TYPE"   "PCDH15 MUTATED" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE"   "PCDH15 MUTATED"   "PCDH15 MUTATED" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-US-A77J 
"PCDH15 WILD-TYPE" 
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
  "PCDH15 MUTATED" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
"PCDH15 WILD-TYPE"   "PCDH15 MUTATED" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
  "PCDH15 MUTATED"   "PCDH15 MUTATED" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE"   "PCDH15 MUTATED" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"PCDH15 WILD-TYPE"   "PCDH15 MUTATED" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE"   "PCDH15 MUTATED"   "PCDH15 MUTATED" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-US-A77J 
"PCDH15 WILD-TYPE" 
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
  "PCDH15 MUTATED" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
"PCDH15 WILD-TYPE"   "PCDH15 MUTATED" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
  "PCDH15 MUTATED"   "PCDH15 MUTATED" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE"   "PCDH15 MUTATED" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"PCDH15 WILD-TYPE"   "PCDH15 MUTATED" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE"   "PCDH15 MUTATED"   "PCDH15 MUTATED" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-US-A77J 
"PCDH15 WILD-TYPE" 
[1] "hr=" "1.3"
D438V2, continuous
                  vv
clus               STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  PCDH15 MUTATED          0        0         3         5         0        0
  PCDH15 WILD-TYPE        1        4         8        46         2        3
D438V3, multiclass
                  vv
clus               T1+T2 T3+T4
  PCDH15 MUTATED       0     8
  PCDH15 WILD-TYPE     6    58
D438V4, multiclass
       clus
vv      PCDH15 MUTATED PCDH15 WILD-TYPE
  T1+T2              0                6
  T3+T4              8               58
D438V5, binary
                  cls
clus                0  1
  PCDH15 MUTATED    3  5
  PCDH15 WILD-TYPE 14 49
[1] "tbl2"
                  cls
clus               [,1] [,2]
  PCDH15 MUTATED      3    5
  PCDH15 WILD-TYPE   14   49
   clus
vv  PCDH15 MUTATED PCDH15 WILD-TYPE
  0              3               14
  1              5               49
                  vv
clus               M0 M1 MX
  PCDH15 MUTATED    4  0  4
  PCDH15 WILD-TYPE 35  3 26
D438V6, multiclass
    clus
vv   PCDH15 MUTATED PCDH15 WILD-TYPE
  M0              4               35
  M1              0                3
  MX              4               26
D438V7, binary
                  cls
clus                0  1
  PCDH15 MUTATED    4  4
  PCDH15 WILD-TYPE 32 32
[1] "tbl2"
                  cls
clus               [,1] [,2]
  PCDH15 MUTATED      4    4
  PCDH15 WILD-TYPE   32   32
        clus
vv       PCDH15 MUTATED PCDH15 WILD-TYPE
  FEMALE              4               32
  MALE                4               32
                  vv
clus               PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  PCDH15 MUTATED                                     7
  PCDH15 WILD-TYPE                                  58
                  vv
clus               PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  PCDH15 MUTATED                                       1
  PCDH15 WILD-TYPE                                     3
                  vv
clus               PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  PCDH15 MUTATED                                                  0
  PCDH15 WILD-TYPE                                                2
D438V8, multiclass
                                                  clus
vv                                                 PCDH15 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                           7
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                         1
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA              0
                                                  clus
vv                                                 PCDH15 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                            58
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                           3
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                2
D438V9, continuous
D438V10, continuous
                  vv
clus               R0 R1 RX
  PCDH15 MUTATED    4  3  0
  PCDH15 WILD-TYPE 38 21  2
D438V11, multiclass
    clus
vv   PCDH15 MUTATED PCDH15 WILD-TYPE
  R0              4               38
  R1              3               21
  RX              0                2
D438V12, continuous

Clustering(439) Variable = SEC24D MUTATION ANALYSIS
D439V1, survival
                  sevent
clus2               0  1
  SEC24D MUTATED    3  2
  SEC24D WILD-TYPE 37 27
  SEC24D MUTATED SEC24D WILD-TYPE 
               5               64 
  SEC24D MUTATED SEC24D WILD-TYPE 
               2               27 
$`SEC24D MUTATED`
TCGA-H6-8124 TCGA-HZ-8317 TCGA-IB-7888 TCGA-IB-8126 TCGA-IB-A6UG 
       12.89         0.53        43.79         0.56         1.35 

$`SEC24D WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P5 TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR 
        0.13        11.93        12.66         2.47         0.03         5.46 
TCGA-FZ-5920 TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7289 
        2.01        36.20        20.81         7.66        13.02         7.89 
TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 
        0.92         0.66         0.13         0.26        12.13        11.87 
TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 
        0.26         0.62         0.79         0.69         3.95         0.92 
TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK 
        0.16         2.99         0.76         0.95         6.38         1.51 
TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7651 
       11.41        49.38         4.77        21.90        15.35        19.82 
TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7889 TCGA-IB-7890 
       15.65        27.98         4.04         3.62        15.81        19.66 
TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP 
       16.04         3.85        15.98        17.16        10.82         9.86 
TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST TCGA-LB-A7SX TCGA-OE-A75W TCGA-PZ-A5RE 
        7.20        15.12         0.26         4.18         3.62         8.12 
TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
       13.68        16.80        14.14        18.67 

  SEC24D MUTATED SEC24D WILD-TYPE 
            0.53             0.03 
  SEC24D MUTATED SEC24D WILD-TYPE 
           43.79            49.38 
  SEC24D MUTATED SEC24D WILD-TYPE 
           1.350            7.775 
[1] "0.5 - 43.8 (1.4)" "0.0 - 49.4 (7.8)"
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
"SEC24D WILD-TYPE" "SEC24D WILD-TYPE" "SEC24D WILD-TYPE" "SEC24D WILD-TYPE" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"SEC24D WILD-TYPE" "SEC24D WILD-TYPE" "SEC24D WILD-TYPE" "SEC24D WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
"SEC24D WILD-TYPE" "SEC24D WILD-TYPE" "SEC24D WILD-TYPE" "SEC24D WILD-TYPE" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"SEC24D WILD-TYPE" "SEC24D WILD-TYPE" "SEC24D WILD-TYPE"   "SEC24D MUTATED" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
"SEC24D WILD-TYPE" "SEC24D WILD-TYPE" "SEC24D WILD-TYPE" "SEC24D WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
"SEC24D WILD-TYPE" "SEC24D WILD-TYPE" "SEC24D WILD-TYPE" "SEC24D WILD-TYPE" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"SEC24D WILD-TYPE" "SEC24D WILD-TYPE" "SEC24D WILD-TYPE" "SEC24D WILD-TYPE" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
"SEC24D WILD-TYPE" "SEC24D WILD-TYPE" "SEC24D WILD-TYPE"   "SEC24D MUTATED" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
"SEC24D WILD-TYPE" "SEC24D WILD-TYPE" "SEC24D WILD-TYPE" "SEC24D WILD-TYPE" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
"SEC24D WILD-TYPE" "SEC24D WILD-TYPE" "SEC24D WILD-TYPE" "SEC24D WILD-TYPE" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
"SEC24D WILD-TYPE" "SEC24D WILD-TYPE" "SEC24D WILD-TYPE" "SEC24D WILD-TYPE" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
"SEC24D WILD-TYPE" "SEC24D WILD-TYPE" "SEC24D WILD-TYPE" "SEC24D WILD-TYPE" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
  "SEC24D MUTATED" "SEC24D WILD-TYPE" "SEC24D WILD-TYPE" "SEC24D WILD-TYPE" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
"SEC24D WILD-TYPE" "SEC24D WILD-TYPE"   "SEC24D MUTATED" "SEC24D WILD-TYPE" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"SEC24D WILD-TYPE" "SEC24D WILD-TYPE" "SEC24D WILD-TYPE" "SEC24D WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"SEC24D WILD-TYPE"   "SEC24D MUTATED" "SEC24D WILD-TYPE" "SEC24D WILD-TYPE" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
"SEC24D WILD-TYPE" "SEC24D WILD-TYPE" "SEC24D WILD-TYPE" "SEC24D WILD-TYPE" 
      TCGA-US-A77J 
"SEC24D WILD-TYPE" 
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
"SEC24D WILD-TYPE" "SEC24D WILD-TYPE" "SEC24D WILD-TYPE" "SEC24D WILD-TYPE" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"SEC24D WILD-TYPE" "SEC24D WILD-TYPE" "SEC24D WILD-TYPE" "SEC24D WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
"SEC24D WILD-TYPE" "SEC24D WILD-TYPE" "SEC24D WILD-TYPE" "SEC24D WILD-TYPE" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"SEC24D WILD-TYPE" "SEC24D WILD-TYPE" "SEC24D WILD-TYPE"   "SEC24D MUTATED" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
"SEC24D WILD-TYPE" "SEC24D WILD-TYPE" "SEC24D WILD-TYPE" "SEC24D WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
"SEC24D WILD-TYPE" "SEC24D WILD-TYPE" "SEC24D WILD-TYPE" "SEC24D WILD-TYPE" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"SEC24D WILD-TYPE" "SEC24D WILD-TYPE" "SEC24D WILD-TYPE" "SEC24D WILD-TYPE" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
"SEC24D WILD-TYPE" "SEC24D WILD-TYPE" "SEC24D WILD-TYPE"   "SEC24D MUTATED" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
"SEC24D WILD-TYPE" "SEC24D WILD-TYPE" "SEC24D WILD-TYPE" "SEC24D WILD-TYPE" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
"SEC24D WILD-TYPE" "SEC24D WILD-TYPE" "SEC24D WILD-TYPE" "SEC24D WILD-TYPE" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
"SEC24D WILD-TYPE" "SEC24D WILD-TYPE" "SEC24D WILD-TYPE" "SEC24D WILD-TYPE" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
"SEC24D WILD-TYPE" "SEC24D WILD-TYPE" "SEC24D WILD-TYPE" "SEC24D WILD-TYPE" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
  "SEC24D MUTATED" "SEC24D WILD-TYPE" "SEC24D WILD-TYPE" "SEC24D WILD-TYPE" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
"SEC24D WILD-TYPE" "SEC24D WILD-TYPE"   "SEC24D MUTATED" "SEC24D WILD-TYPE" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"SEC24D WILD-TYPE" "SEC24D WILD-TYPE" "SEC24D WILD-TYPE" "SEC24D WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"SEC24D WILD-TYPE"   "SEC24D MUTATED" "SEC24D WILD-TYPE" "SEC24D WILD-TYPE" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
"SEC24D WILD-TYPE" "SEC24D WILD-TYPE" "SEC24D WILD-TYPE" "SEC24D WILD-TYPE" 
      TCGA-US-A77J 
"SEC24D WILD-TYPE" 
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
"SEC24D WILD-TYPE" "SEC24D WILD-TYPE" "SEC24D WILD-TYPE" "SEC24D WILD-TYPE" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"SEC24D WILD-TYPE" "SEC24D WILD-TYPE" "SEC24D WILD-TYPE" "SEC24D WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
"SEC24D WILD-TYPE" "SEC24D WILD-TYPE" "SEC24D WILD-TYPE" "SEC24D WILD-TYPE" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"SEC24D WILD-TYPE" "SEC24D WILD-TYPE" "SEC24D WILD-TYPE"   "SEC24D MUTATED" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
"SEC24D WILD-TYPE" "SEC24D WILD-TYPE" "SEC24D WILD-TYPE" "SEC24D WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
"SEC24D WILD-TYPE" "SEC24D WILD-TYPE" "SEC24D WILD-TYPE" "SEC24D WILD-TYPE" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"SEC24D WILD-TYPE" "SEC24D WILD-TYPE" "SEC24D WILD-TYPE" "SEC24D WILD-TYPE" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
"SEC24D WILD-TYPE" "SEC24D WILD-TYPE" "SEC24D WILD-TYPE"   "SEC24D MUTATED" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
"SEC24D WILD-TYPE" "SEC24D WILD-TYPE" "SEC24D WILD-TYPE" "SEC24D WILD-TYPE" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
"SEC24D WILD-TYPE" "SEC24D WILD-TYPE" "SEC24D WILD-TYPE" "SEC24D WILD-TYPE" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
"SEC24D WILD-TYPE" "SEC24D WILD-TYPE" "SEC24D WILD-TYPE" "SEC24D WILD-TYPE" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
"SEC24D WILD-TYPE" "SEC24D WILD-TYPE" "SEC24D WILD-TYPE" "SEC24D WILD-TYPE" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
  "SEC24D MUTATED" "SEC24D WILD-TYPE" "SEC24D WILD-TYPE" "SEC24D WILD-TYPE" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
"SEC24D WILD-TYPE" "SEC24D WILD-TYPE"   "SEC24D MUTATED" "SEC24D WILD-TYPE" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"SEC24D WILD-TYPE" "SEC24D WILD-TYPE" "SEC24D WILD-TYPE" "SEC24D WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"SEC24D WILD-TYPE"   "SEC24D MUTATED" "SEC24D WILD-TYPE" "SEC24D WILD-TYPE" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
"SEC24D WILD-TYPE" "SEC24D WILD-TYPE" "SEC24D WILD-TYPE" "SEC24D WILD-TYPE" 
      TCGA-US-A77J 
"SEC24D WILD-TYPE" 
[1] "hr=" "1.5"
D439V2, continuous
                  vv
clus               STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  SEC24D MUTATED          0        0         1         3         1        0
  SEC24D WILD-TYPE        1        4        10        48         1        3
D439V3, multiclass
                  vv
clus               T1+T2 T3+T4
  SEC24D MUTATED       0     5
  SEC24D WILD-TYPE     6    61
D439V4, multiclass
       clus
vv      SEC24D MUTATED SEC24D WILD-TYPE
  T1+T2              0                6
  T3+T4              5               61
D439V5, binary
                  cls
clus                0  1
  SEC24D MUTATED    1  4
  SEC24D WILD-TYPE 16 50
[1] "tbl2"
                  cls
clus               [,1] [,2]
  SEC24D MUTATED      1    4
  SEC24D WILD-TYPE   16   50
   clus
vv  SEC24D MUTATED SEC24D WILD-TYPE
  0              1               16
  1              4               50
                  vv
clus               M0 M1 MX
  SEC24D MUTATED    4  0  1
  SEC24D WILD-TYPE 35  3 29
D439V6, multiclass
    clus
vv   SEC24D MUTATED SEC24D WILD-TYPE
  M0              4               35
  M1              0                3
  MX              1               29
D439V7, binary
                  cls
clus                0  1
  SEC24D MUTATED    4  1
  SEC24D WILD-TYPE 32 35
[1] "tbl2"
                  cls
clus               [,1] [,2]
  SEC24D MUTATED      4    1
  SEC24D WILD-TYPE   32   35
        clus
vv       SEC24D MUTATED SEC24D WILD-TYPE
  FEMALE              4               32
  MALE                1               35
                  vv
clus               PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  SEC24D MUTATED                                     5
  SEC24D WILD-TYPE                                  60
                  vv
clus               PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  SEC24D MUTATED                                       0
  SEC24D WILD-TYPE                                     4
                  vv
clus               PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  SEC24D MUTATED                                                  0
  SEC24D WILD-TYPE                                                2
D439V8, multiclass
                                                  clus
vv                                                 SEC24D MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                           5
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                         0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA              0
                                                  clus
vv                                                 SEC24D WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                            60
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                           4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                2
D439V9, continuous
D439V10, continuous
                  vv
clus               R0 R1 RX
  SEC24D MUTATED    2  3  0
  SEC24D WILD-TYPE 40 21  2
D439V11, multiclass
    clus
vv   SEC24D MUTATED SEC24D WILD-TYPE
  R0              2               40
  R1              3               21
  RX              0                2
D439V12, continuous

Clustering(440) Variable = SH3BP1 MUTATION ANALYSIS
D440V1, survival
                  sevent
clus2               0  1
  SH3BP1 MUTATED    1  3
  SH3BP1 WILD-TYPE 39 26
  SH3BP1 MUTATED SH3BP1 WILD-TYPE 
               4               65 
  SH3BP1 MUTATED SH3BP1 WILD-TYPE 
               3               26 
$`SH3BP1 MUTATED`
TCGA-FB-A4P5 TCGA-HZ-A4BH TCGA-IB-7651 TCGA-IB-7897 
        0.13         6.38        19.82        15.98 

$`SH3BP1 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR TCGA-FZ-5920 
       11.93        12.66         2.47         0.03         5.46         2.01 
TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7289 
       36.20        20.81        12.89         7.66        13.02         7.89 
TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 
        0.92         0.66         0.13         0.26        12.13        11.87 
TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 
        0.26         0.62         0.79         0.69         3.95         0.92 
TCGA-HZ-8317 TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BK 
        0.53         0.16         2.99         0.76         0.95         1.51 
TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7652 
       11.41        49.38         4.77        21.90        15.35        15.65 
TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 
       27.98         4.04         3.62        43.79        15.81        19.66 
TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP 
       16.04         3.85         0.56        17.16        10.82         9.86 
TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W 
        7.20        15.12         0.26         1.35         4.18         3.62 
TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
        8.12        13.68        16.80        14.14        18.67 

  SH3BP1 MUTATED SH3BP1 WILD-TYPE 
            0.13             0.03 
  SH3BP1 MUTATED SH3BP1 WILD-TYPE 
           19.82            49.38 
  SH3BP1 MUTATED SH3BP1 WILD-TYPE 
           11.18             7.66 
[1] "0.1 - 19.8 (11.2)" "0.0 - 49.4 (7.7)" 
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
"SH3BP1 WILD-TYPE" "SH3BP1 WILD-TYPE" "SH3BP1 WILD-TYPE" "SH3BP1 WILD-TYPE" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"SH3BP1 WILD-TYPE" "SH3BP1 WILD-TYPE"   "SH3BP1 MUTATED" "SH3BP1 WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
"SH3BP1 WILD-TYPE" "SH3BP1 WILD-TYPE" "SH3BP1 WILD-TYPE" "SH3BP1 WILD-TYPE" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"SH3BP1 WILD-TYPE" "SH3BP1 WILD-TYPE" "SH3BP1 WILD-TYPE" "SH3BP1 WILD-TYPE" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
"SH3BP1 WILD-TYPE" "SH3BP1 WILD-TYPE" "SH3BP1 WILD-TYPE" "SH3BP1 WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
"SH3BP1 WILD-TYPE" "SH3BP1 WILD-TYPE" "SH3BP1 WILD-TYPE" "SH3BP1 WILD-TYPE" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"SH3BP1 WILD-TYPE" "SH3BP1 WILD-TYPE" "SH3BP1 WILD-TYPE" "SH3BP1 WILD-TYPE" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
"SH3BP1 WILD-TYPE" "SH3BP1 WILD-TYPE" "SH3BP1 WILD-TYPE" "SH3BP1 WILD-TYPE" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
"SH3BP1 WILD-TYPE" "SH3BP1 WILD-TYPE" "SH3BP1 WILD-TYPE" "SH3BP1 WILD-TYPE" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
  "SH3BP1 MUTATED" "SH3BP1 WILD-TYPE" "SH3BP1 WILD-TYPE" "SH3BP1 WILD-TYPE" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
"SH3BP1 WILD-TYPE" "SH3BP1 WILD-TYPE" "SH3BP1 WILD-TYPE"   "SH3BP1 MUTATED" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
"SH3BP1 WILD-TYPE" "SH3BP1 WILD-TYPE" "SH3BP1 WILD-TYPE" "SH3BP1 WILD-TYPE" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
"SH3BP1 WILD-TYPE" "SH3BP1 WILD-TYPE" "SH3BP1 WILD-TYPE" "SH3BP1 WILD-TYPE" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
"SH3BP1 WILD-TYPE"   "SH3BP1 MUTATED" "SH3BP1 WILD-TYPE" "SH3BP1 WILD-TYPE" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"SH3BP1 WILD-TYPE" "SH3BP1 WILD-TYPE" "SH3BP1 WILD-TYPE" "SH3BP1 WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"SH3BP1 WILD-TYPE" "SH3BP1 WILD-TYPE" "SH3BP1 WILD-TYPE" "SH3BP1 WILD-TYPE" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
"SH3BP1 WILD-TYPE" "SH3BP1 WILD-TYPE" "SH3BP1 WILD-TYPE" "SH3BP1 WILD-TYPE" 
      TCGA-US-A77J 
"SH3BP1 WILD-TYPE" 
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
"SH3BP1 WILD-TYPE" "SH3BP1 WILD-TYPE" "SH3BP1 WILD-TYPE" "SH3BP1 WILD-TYPE" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"SH3BP1 WILD-TYPE" "SH3BP1 WILD-TYPE"   "SH3BP1 MUTATED" "SH3BP1 WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
"SH3BP1 WILD-TYPE" "SH3BP1 WILD-TYPE" "SH3BP1 WILD-TYPE" "SH3BP1 WILD-TYPE" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"SH3BP1 WILD-TYPE" "SH3BP1 WILD-TYPE" "SH3BP1 WILD-TYPE" "SH3BP1 WILD-TYPE" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
"SH3BP1 WILD-TYPE" "SH3BP1 WILD-TYPE" "SH3BP1 WILD-TYPE" "SH3BP1 WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
"SH3BP1 WILD-TYPE" "SH3BP1 WILD-TYPE" "SH3BP1 WILD-TYPE" "SH3BP1 WILD-TYPE" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"SH3BP1 WILD-TYPE" "SH3BP1 WILD-TYPE" "SH3BP1 WILD-TYPE" "SH3BP1 WILD-TYPE" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
"SH3BP1 WILD-TYPE" "SH3BP1 WILD-TYPE" "SH3BP1 WILD-TYPE" "SH3BP1 WILD-TYPE" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
"SH3BP1 WILD-TYPE" "SH3BP1 WILD-TYPE" "SH3BP1 WILD-TYPE" "SH3BP1 WILD-TYPE" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
  "SH3BP1 MUTATED" "SH3BP1 WILD-TYPE" "SH3BP1 WILD-TYPE" "SH3BP1 WILD-TYPE" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
"SH3BP1 WILD-TYPE" "SH3BP1 WILD-TYPE" "SH3BP1 WILD-TYPE"   "SH3BP1 MUTATED" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
"SH3BP1 WILD-TYPE" "SH3BP1 WILD-TYPE" "SH3BP1 WILD-TYPE" "SH3BP1 WILD-TYPE" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
"SH3BP1 WILD-TYPE" "SH3BP1 WILD-TYPE" "SH3BP1 WILD-TYPE" "SH3BP1 WILD-TYPE" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
"SH3BP1 WILD-TYPE"   "SH3BP1 MUTATED" "SH3BP1 WILD-TYPE" "SH3BP1 WILD-TYPE" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"SH3BP1 WILD-TYPE" "SH3BP1 WILD-TYPE" "SH3BP1 WILD-TYPE" "SH3BP1 WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"SH3BP1 WILD-TYPE" "SH3BP1 WILD-TYPE" "SH3BP1 WILD-TYPE" "SH3BP1 WILD-TYPE" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
"SH3BP1 WILD-TYPE" "SH3BP1 WILD-TYPE" "SH3BP1 WILD-TYPE" "SH3BP1 WILD-TYPE" 
      TCGA-US-A77J 
"SH3BP1 WILD-TYPE" 
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
"SH3BP1 WILD-TYPE" "SH3BP1 WILD-TYPE" "SH3BP1 WILD-TYPE" "SH3BP1 WILD-TYPE" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"SH3BP1 WILD-TYPE" "SH3BP1 WILD-TYPE"   "SH3BP1 MUTATED" "SH3BP1 WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
"SH3BP1 WILD-TYPE" "SH3BP1 WILD-TYPE" "SH3BP1 WILD-TYPE" "SH3BP1 WILD-TYPE" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"SH3BP1 WILD-TYPE" "SH3BP1 WILD-TYPE" "SH3BP1 WILD-TYPE" "SH3BP1 WILD-TYPE" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
"SH3BP1 WILD-TYPE" "SH3BP1 WILD-TYPE" "SH3BP1 WILD-TYPE" "SH3BP1 WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
"SH3BP1 WILD-TYPE" "SH3BP1 WILD-TYPE" "SH3BP1 WILD-TYPE" "SH3BP1 WILD-TYPE" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"SH3BP1 WILD-TYPE" "SH3BP1 WILD-TYPE" "SH3BP1 WILD-TYPE" "SH3BP1 WILD-TYPE" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
"SH3BP1 WILD-TYPE" "SH3BP1 WILD-TYPE" "SH3BP1 WILD-TYPE" "SH3BP1 WILD-TYPE" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
"SH3BP1 WILD-TYPE" "SH3BP1 WILD-TYPE" "SH3BP1 WILD-TYPE" "SH3BP1 WILD-TYPE" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
  "SH3BP1 MUTATED" "SH3BP1 WILD-TYPE" "SH3BP1 WILD-TYPE" "SH3BP1 WILD-TYPE" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
"SH3BP1 WILD-TYPE" "SH3BP1 WILD-TYPE" "SH3BP1 WILD-TYPE"   "SH3BP1 MUTATED" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
"SH3BP1 WILD-TYPE" "SH3BP1 WILD-TYPE" "SH3BP1 WILD-TYPE" "SH3BP1 WILD-TYPE" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
"SH3BP1 WILD-TYPE" "SH3BP1 WILD-TYPE" "SH3BP1 WILD-TYPE" "SH3BP1 WILD-TYPE" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
"SH3BP1 WILD-TYPE"   "SH3BP1 MUTATED" "SH3BP1 WILD-TYPE" "SH3BP1 WILD-TYPE" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"SH3BP1 WILD-TYPE" "SH3BP1 WILD-TYPE" "SH3BP1 WILD-TYPE" "SH3BP1 WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"SH3BP1 WILD-TYPE" "SH3BP1 WILD-TYPE" "SH3BP1 WILD-TYPE" "SH3BP1 WILD-TYPE" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
"SH3BP1 WILD-TYPE" "SH3BP1 WILD-TYPE" "SH3BP1 WILD-TYPE" "SH3BP1 WILD-TYPE" 
      TCGA-US-A77J 
"SH3BP1 WILD-TYPE" 
[1] "hr=" "1.5"
D440V2, continuous
                  vv
clus               STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  SH3BP1 MUTATED          0        0         0         4         0        0
  SH3BP1 WILD-TYPE        1        4        11        47         2        3
D440V3, multiclass
                  vv
clus               T1+T2 T3+T4
  SH3BP1 MUTATED       0     4
  SH3BP1 WILD-TYPE     6    62
D440V4, multiclass
       clus
vv      SH3BP1 MUTATED SH3BP1 WILD-TYPE
  T1+T2              0                6
  T3+T4              4               62
D440V5, binary
                  cls
clus                0  1
  SH3BP1 MUTATED    0  4
  SH3BP1 WILD-TYPE 17 50
[1] "tbl2"
                  cls
clus               [,1] [,2]
  SH3BP1 MUTATED      0    4
  SH3BP1 WILD-TYPE   17   50
   clus
vv  SH3BP1 MUTATED SH3BP1 WILD-TYPE
  0              0               17
  1              4               50
                  vv
clus               M0 M1 MX
  SH3BP1 MUTATED    2  0  2
  SH3BP1 WILD-TYPE 37  3 28
D440V6, multiclass
    clus
vv   SH3BP1 MUTATED SH3BP1 WILD-TYPE
  M0              2               37
  M1              0                3
  MX              2               28
D440V7, binary
                  cls
clus                0  1
  SH3BP1 MUTATED    3  1
  SH3BP1 WILD-TYPE 33 35
[1] "tbl2"
                  cls
clus               [,1] [,2]
  SH3BP1 MUTATED      3    1
  SH3BP1 WILD-TYPE   33   35
        clus
vv       SH3BP1 MUTATED SH3BP1 WILD-TYPE
  FEMALE              3               33
  MALE                1               35
                  vv
clus               PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  SH3BP1 MUTATED                                     4
  SH3BP1 WILD-TYPE                                  61
                  vv
clus               PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  SH3BP1 MUTATED                                       0
  SH3BP1 WILD-TYPE                                     4
                  vv
clus               PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  SH3BP1 MUTATED                                                  0
  SH3BP1 WILD-TYPE                                                2
D440V8, multiclass
                                                  clus
vv                                                 SH3BP1 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                           4
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                         0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA              0
                                                  clus
vv                                                 SH3BP1 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                            61
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                           4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                2
D440V9, continuous
[1] "Remove cluster labels:" "SH3BP1 MUTATED"        
clus
  SH3BP1 MUTATED SH3BP1 WILD-TYPE 
               2               20 
      TCGA-F2-6880       TCGA-FB-A4P6       TCGA-FB-A5VM       TCGA-FB-A78T 
"SH3BP1 WILD-TYPE" "SH3BP1 WILD-TYPE" "SH3BP1 WILD-TYPE" "SH3BP1 WILD-TYPE" 
      TCGA-FB-A7DR       TCGA-H6-8124       TCGA-H6-A45N       TCGA-H8-A6C1 
"SH3BP1 WILD-TYPE" "SH3BP1 WILD-TYPE" "SH3BP1 WILD-TYPE" "SH3BP1 WILD-TYPE" 
      TCGA-IB-7644       TCGA-IB-7649       TCGA-IB-7885       TCGA-IB-7886 
"SH3BP1 WILD-TYPE" "SH3BP1 WILD-TYPE" "SH3BP1 WILD-TYPE" "SH3BP1 WILD-TYPE" 
      TCGA-IB-7887       TCGA-IB-7891       TCGA-IB-8126       TCGA-IB-8127 
"SH3BP1 WILD-TYPE" "SH3BP1 WILD-TYPE" "SH3BP1 WILD-TYPE" "SH3BP1 WILD-TYPE" 
      TCGA-IB-A5SS       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"SH3BP1 WILD-TYPE" "SH3BP1 WILD-TYPE" "SH3BP1 WILD-TYPE" "SH3BP1 WILD-TYPE" 
D440V10, continuous
[1] "Remove cluster labels:" "SH3BP1 MUTATED"        
clus
  SH3BP1 MUTATED SH3BP1 WILD-TYPE 
               2               17 
      TCGA-FB-A4P6       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
"SH3BP1 WILD-TYPE" "SH3BP1 WILD-TYPE" "SH3BP1 WILD-TYPE" "SH3BP1 WILD-TYPE" 
      TCGA-H6-8124       TCGA-H8-A6C1       TCGA-IB-7644       TCGA-IB-7649 
"SH3BP1 WILD-TYPE" "SH3BP1 WILD-TYPE" "SH3BP1 WILD-TYPE" "SH3BP1 WILD-TYPE" 
      TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7891       TCGA-IB-8126 
"SH3BP1 WILD-TYPE" "SH3BP1 WILD-TYPE" "SH3BP1 WILD-TYPE" "SH3BP1 WILD-TYPE" 
      TCGA-IB-8127       TCGA-IB-A5SS       TCGA-IB-A6UG       TCGA-LB-A7SX 
"SH3BP1 WILD-TYPE" "SH3BP1 WILD-TYPE" "SH3BP1 WILD-TYPE" "SH3BP1 WILD-TYPE" 
      TCGA-OE-A75W 
"SH3BP1 WILD-TYPE" 
                  vv
clus               R0 R1 RX
  SH3BP1 MUTATED    3  1  0
  SH3BP1 WILD-TYPE 39 23  2
D440V11, multiclass
    clus
vv   SH3BP1 MUTATED SH3BP1 WILD-TYPE
  R0              3               39
  R1              1               23
  RX              0                2
D440V12, continuous

Clustering(441) Variable = IKZF2 MUTATION ANALYSIS
D441V1, survival
                 sevent
clus2              0  1
  IKZF2 MUTATED    0  3
  IKZF2 WILD-TYPE 40 26
  IKZF2 MUTATED IKZF2 WILD-TYPE 
              3              66 
  IKZF2 MUTATED IKZF2 WILD-TYPE 
              3              26 
$`IKZF2 MUTATED`
TCGA-IB-7651 TCGA-IB-7886 TCGA-IB-7887 
       19.82         4.04         3.62 

$`IKZF2 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P5 TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR 
        0.13        11.93        12.66         2.47         0.03         5.46 
TCGA-FZ-5920 TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 
        2.01        36.20        20.81        12.89         7.66        13.02 
TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 
        7.89         0.92         0.66         0.13         0.26        12.13 
TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 
       11.87         0.26         0.62         0.79         0.69         3.95 
TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H 
        0.92         0.53         0.16         2.99         0.76         0.95 
TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 
        6.38         1.51        11.41        49.38         4.77        21.90 
TCGA-IB-7649 TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 
       15.35        15.65        27.98        43.79        15.81        19.66 
TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO 
       16.04         3.85        15.98         0.56        17.16        10.82 
TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX 
        9.86         7.20        15.12         0.26         1.35         4.18 
TCGA-OE-A75W TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
        3.62         8.12        13.68        16.80        14.14        18.67 

  IKZF2 MUTATED IKZF2 WILD-TYPE 
           3.62            0.03 
  IKZF2 MUTATED IKZF2 WILD-TYPE 
          19.82           49.38 
  IKZF2 MUTATED IKZF2 WILD-TYPE 
          4.040           7.775 
[1] "3.6 - 19.8 (4.0)" "0.0 - 49.4 (7.8)"
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"IKZF2 WILD-TYPE" "IKZF2 WILD-TYPE" "IKZF2 WILD-TYPE" "IKZF2 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"IKZF2 WILD-TYPE" "IKZF2 WILD-TYPE" "IKZF2 WILD-TYPE" "IKZF2 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"IKZF2 WILD-TYPE" "IKZF2 WILD-TYPE" "IKZF2 WILD-TYPE" "IKZF2 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"IKZF2 WILD-TYPE" "IKZF2 WILD-TYPE" "IKZF2 WILD-TYPE" "IKZF2 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"IKZF2 WILD-TYPE" "IKZF2 WILD-TYPE" "IKZF2 WILD-TYPE" "IKZF2 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"IKZF2 WILD-TYPE" "IKZF2 WILD-TYPE" "IKZF2 WILD-TYPE" "IKZF2 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"IKZF2 WILD-TYPE" "IKZF2 WILD-TYPE" "IKZF2 WILD-TYPE" "IKZF2 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"IKZF2 WILD-TYPE" "IKZF2 WILD-TYPE" "IKZF2 WILD-TYPE" "IKZF2 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"IKZF2 WILD-TYPE" "IKZF2 WILD-TYPE" "IKZF2 WILD-TYPE" "IKZF2 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"IKZF2 WILD-TYPE" "IKZF2 WILD-TYPE" "IKZF2 WILD-TYPE" "IKZF2 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"IKZF2 WILD-TYPE" "IKZF2 WILD-TYPE" "IKZF2 WILD-TYPE"   "IKZF2 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"IKZF2 WILD-TYPE" "IKZF2 WILD-TYPE"   "IKZF2 MUTATED"   "IKZF2 MUTATED" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"IKZF2 WILD-TYPE" "IKZF2 WILD-TYPE" "IKZF2 WILD-TYPE" "IKZF2 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"IKZF2 WILD-TYPE" "IKZF2 WILD-TYPE" "IKZF2 WILD-TYPE" "IKZF2 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"IKZF2 WILD-TYPE" "IKZF2 WILD-TYPE" "IKZF2 WILD-TYPE" "IKZF2 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"IKZF2 WILD-TYPE" "IKZF2 WILD-TYPE" "IKZF2 WILD-TYPE" "IKZF2 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"IKZF2 WILD-TYPE" "IKZF2 WILD-TYPE" "IKZF2 WILD-TYPE" "IKZF2 WILD-TYPE" 
     TCGA-US-A77J 
"IKZF2 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"IKZF2 WILD-TYPE" "IKZF2 WILD-TYPE" "IKZF2 WILD-TYPE" "IKZF2 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"IKZF2 WILD-TYPE" "IKZF2 WILD-TYPE" "IKZF2 WILD-TYPE" "IKZF2 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"IKZF2 WILD-TYPE" "IKZF2 WILD-TYPE" "IKZF2 WILD-TYPE" "IKZF2 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"IKZF2 WILD-TYPE" "IKZF2 WILD-TYPE" "IKZF2 WILD-TYPE" "IKZF2 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"IKZF2 WILD-TYPE" "IKZF2 WILD-TYPE" "IKZF2 WILD-TYPE" "IKZF2 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"IKZF2 WILD-TYPE" "IKZF2 WILD-TYPE" "IKZF2 WILD-TYPE" "IKZF2 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"IKZF2 WILD-TYPE" "IKZF2 WILD-TYPE" "IKZF2 WILD-TYPE" "IKZF2 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"IKZF2 WILD-TYPE" "IKZF2 WILD-TYPE" "IKZF2 WILD-TYPE" "IKZF2 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"IKZF2 WILD-TYPE" "IKZF2 WILD-TYPE" "IKZF2 WILD-TYPE" "IKZF2 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"IKZF2 WILD-TYPE" "IKZF2 WILD-TYPE" "IKZF2 WILD-TYPE" "IKZF2 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"IKZF2 WILD-TYPE" "IKZF2 WILD-TYPE" "IKZF2 WILD-TYPE"   "IKZF2 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"IKZF2 WILD-TYPE" "IKZF2 WILD-TYPE"   "IKZF2 MUTATED"   "IKZF2 MUTATED" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"IKZF2 WILD-TYPE" "IKZF2 WILD-TYPE" "IKZF2 WILD-TYPE" "IKZF2 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"IKZF2 WILD-TYPE" "IKZF2 WILD-TYPE" "IKZF2 WILD-TYPE" "IKZF2 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"IKZF2 WILD-TYPE" "IKZF2 WILD-TYPE" "IKZF2 WILD-TYPE" "IKZF2 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"IKZF2 WILD-TYPE" "IKZF2 WILD-TYPE" "IKZF2 WILD-TYPE" "IKZF2 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"IKZF2 WILD-TYPE" "IKZF2 WILD-TYPE" "IKZF2 WILD-TYPE" "IKZF2 WILD-TYPE" 
     TCGA-US-A77J 
"IKZF2 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"IKZF2 WILD-TYPE" "IKZF2 WILD-TYPE" "IKZF2 WILD-TYPE" "IKZF2 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"IKZF2 WILD-TYPE" "IKZF2 WILD-TYPE" "IKZF2 WILD-TYPE" "IKZF2 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"IKZF2 WILD-TYPE" "IKZF2 WILD-TYPE" "IKZF2 WILD-TYPE" "IKZF2 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"IKZF2 WILD-TYPE" "IKZF2 WILD-TYPE" "IKZF2 WILD-TYPE" "IKZF2 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"IKZF2 WILD-TYPE" "IKZF2 WILD-TYPE" "IKZF2 WILD-TYPE" "IKZF2 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"IKZF2 WILD-TYPE" "IKZF2 WILD-TYPE" "IKZF2 WILD-TYPE" "IKZF2 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"IKZF2 WILD-TYPE" "IKZF2 WILD-TYPE" "IKZF2 WILD-TYPE" "IKZF2 WILD-TYPE" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
"IKZF2 WILD-TYPE" "IKZF2 WILD-TYPE" "IKZF2 WILD-TYPE" "IKZF2 WILD-TYPE" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"IKZF2 WILD-TYPE" "IKZF2 WILD-TYPE" "IKZF2 WILD-TYPE" "IKZF2 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"IKZF2 WILD-TYPE" "IKZF2 WILD-TYPE" "IKZF2 WILD-TYPE" "IKZF2 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"IKZF2 WILD-TYPE" "IKZF2 WILD-TYPE" "IKZF2 WILD-TYPE"   "IKZF2 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"IKZF2 WILD-TYPE" "IKZF2 WILD-TYPE"   "IKZF2 MUTATED"   "IKZF2 MUTATED" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"IKZF2 WILD-TYPE" "IKZF2 WILD-TYPE" "IKZF2 WILD-TYPE" "IKZF2 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"IKZF2 WILD-TYPE" "IKZF2 WILD-TYPE" "IKZF2 WILD-TYPE" "IKZF2 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"IKZF2 WILD-TYPE" "IKZF2 WILD-TYPE" "IKZF2 WILD-TYPE" "IKZF2 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"IKZF2 WILD-TYPE" "IKZF2 WILD-TYPE" "IKZF2 WILD-TYPE" "IKZF2 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"IKZF2 WILD-TYPE" "IKZF2 WILD-TYPE" "IKZF2 WILD-TYPE" "IKZF2 WILD-TYPE" 
     TCGA-US-A77J 
"IKZF2 WILD-TYPE" 
[1] "hr=" "2.4"
D441V2, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  IKZF2 MUTATED          0        0         0         3         0        0
  IKZF2 WILD-TYPE        1        4        11        48         2        3
D441V3, multiclass
                 vv
clus              T1+T2 T3+T4
  IKZF2 MUTATED       0     3
  IKZF2 WILD-TYPE     6    63
D441V4, multiclass
       clus
vv      IKZF2 MUTATED IKZF2 WILD-TYPE
  T1+T2             0               6
  T3+T4             3              63
D441V5, binary
                 cls
clus               0  1
  IKZF2 MUTATED    0  3
  IKZF2 WILD-TYPE 17 51
[1] "tbl2"
                 cls
clus              [,1] [,2]
  IKZF2 MUTATED      0    3
  IKZF2 WILD-TYPE   17   51
   clus
vv  IKZF2 MUTATED IKZF2 WILD-TYPE
  0             0              17
  1             3              51
                 vv
clus              M0 M1 MX
  IKZF2 MUTATED    3  0  0
  IKZF2 WILD-TYPE 36  3 30
D441V6, multiclass
    clus
vv   IKZF2 MUTATED IKZF2 WILD-TYPE
  M0             3              36
  M1             0               3
  MX             0              30
D441V7, binary
                 cls
clus               0  1
  IKZF2 MUTATED    2  1
  IKZF2 WILD-TYPE 34 35
[1] "tbl2"
                 cls
clus              [,1] [,2]
  IKZF2 MUTATED      2    1
  IKZF2 WILD-TYPE   34   35
        clus
vv       IKZF2 MUTATED IKZF2 WILD-TYPE
  FEMALE             2              34
  MALE               1              35
                 vv
clus              PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  IKZF2 MUTATED                                     3
  IKZF2 WILD-TYPE                                  62
                 vv
clus              PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  IKZF2 MUTATED                                       0
  IKZF2 WILD-TYPE                                     4
                 vv
clus              PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  IKZF2 MUTATED                                                  0
  IKZF2 WILD-TYPE                                                2
D441V8, multiclass
                                                  clus
vv                                                 IKZF2 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                          3
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                        0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA             0
                                                  clus
vv                                                 IKZF2 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                           62
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                          4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA               2
D441V9, continuous
D441V10, continuous
[1] "Remove cluster labels:" "IKZF2 MUTATED"         
clus
  IKZF2 MUTATED IKZF2 WILD-TYPE 
              2              17 
     TCGA-FB-A4P5      TCGA-FB-A4P6      TCGA-FB-A5VM      TCGA-FB-A78T 
"IKZF2 WILD-TYPE" "IKZF2 WILD-TYPE" "IKZF2 WILD-TYPE" "IKZF2 WILD-TYPE" 
     TCGA-FB-A7DR      TCGA-H6-8124      TCGA-H8-A6C1      TCGA-IB-7644 
"IKZF2 WILD-TYPE" "IKZF2 WILD-TYPE" "IKZF2 WILD-TYPE" "IKZF2 WILD-TYPE" 
     TCGA-IB-7649      TCGA-IB-7885      TCGA-IB-7891      TCGA-IB-8126 
"IKZF2 WILD-TYPE" "IKZF2 WILD-TYPE" "IKZF2 WILD-TYPE" "IKZF2 WILD-TYPE" 
     TCGA-IB-8127      TCGA-IB-A5SS      TCGA-IB-A6UG      TCGA-LB-A7SX 
"IKZF2 WILD-TYPE" "IKZF2 WILD-TYPE" "IKZF2 WILD-TYPE" "IKZF2 WILD-TYPE" 
     TCGA-OE-A75W 
"IKZF2 WILD-TYPE" 
                 vv
clus              R0 R1 RX
  IKZF2 MUTATED    1  2  0
  IKZF2 WILD-TYPE 41 22  2
D441V11, multiclass
    clus
vv   IKZF2 MUTATED IKZF2 WILD-TYPE
  R0             1              41
  R1             2              22
  RX             0               2
D441V12, continuous

Clustering(442) Variable = RARRES3 MUTATION ANALYSIS
D442V1, survival
                   sevent
clus2                0  1
  RARRES3 MUTATED    2  1
  RARRES3 WILD-TYPE 38 28
  RARRES3 MUTATED RARRES3 WILD-TYPE 
                3                66 
  RARRES3 MUTATED RARRES3 WILD-TYPE 
                1                28 
$`RARRES3 MUTATED`
TCGA-HZ-A49G TCGA-HZ-A4BH TCGA-IB-7651 
        0.76         6.38        19.82 

$`RARRES3 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P5 TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR 
        0.13        11.93        12.66         2.47         0.03         5.46 
TCGA-FZ-5920 TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 
        2.01        36.20        20.81        12.89         7.66        13.02 
TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 
        7.89         0.92         0.66         0.13         0.26        12.13 
TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 
       11.87         0.26         0.62         0.79         0.69         3.95 
TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49H TCGA-HZ-A4BK 
        0.92         0.53         0.16         2.99         0.95         1.51 
TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7652 
       11.41        49.38         4.77        21.90        15.35        15.65 
TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 
       27.98         4.04         3.62        43.79        15.81        19.66 
TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO 
       16.04         3.85        15.98         0.56        17.16        10.82 
TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX 
        9.86         7.20        15.12         0.26         1.35         4.18 
TCGA-OE-A75W TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
        3.62         8.12        13.68        16.80        14.14        18.67 

  RARRES3 MUTATED RARRES3 WILD-TYPE 
             0.76              0.03 
  RARRES3 MUTATED RARRES3 WILD-TYPE 
            19.82             49.38 
  RARRES3 MUTATED RARRES3 WILD-TYPE 
            6.380             7.775 
[1] "0.8 - 19.8 (6.4)" "0.0 - 49.4 (7.8)"
       TCGA-F2-6879        TCGA-F2-6880        TCGA-F2-7273        TCGA-F2-7276 
"RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" 
       TCGA-F2-A44G        TCGA-F2-A44H        TCGA-FB-A4P5        TCGA-FB-A4P6 
"RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" 
       TCGA-FB-A545        TCGA-FB-A5VM        TCGA-FB-A78T        TCGA-FB-A7DR 
"RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" 
       TCGA-FZ-5920        TCGA-FZ-5922        TCGA-FZ-5923        TCGA-H6-8124 
"RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" 
       TCGA-H6-A45N        TCGA-H8-A6C1        TCGA-HZ-7289        TCGA-HZ-7918 
"RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" 
       TCGA-HZ-7919        TCGA-HZ-7922        TCGA-HZ-7923        TCGA-HZ-7924 
"RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" 
       TCGA-HZ-7925        TCGA-HZ-7926        TCGA-HZ-8001        TCGA-HZ-8002 
"RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" 
       TCGA-HZ-8003        TCGA-HZ-8005        TCGA-HZ-8315        TCGA-HZ-8317 
"RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" 
       TCGA-HZ-8636        TCGA-HZ-8638        TCGA-HZ-A49G        TCGA-HZ-A49H 
"RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE"   "RARRES3 MUTATED" "RARRES3 WILD-TYPE" 
       TCGA-HZ-A4BH        TCGA-HZ-A4BK        TCGA-IB-7644        TCGA-IB-7645 
  "RARRES3 MUTATED" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" 
       TCGA-IB-7646        TCGA-IB-7647        TCGA-IB-7649        TCGA-IB-7651 
"RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE"   "RARRES3 MUTATED" 
       TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-7886        TCGA-IB-7887 
"RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" 
       TCGA-IB-7888        TCGA-IB-7889        TCGA-IB-7890        TCGA-IB-7891 
"RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" 
       TCGA-IB-7893        TCGA-IB-7897        TCGA-IB-8126        TCGA-IB-8127 
"RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" 
       TCGA-IB-A5SO        TCGA-IB-A5SP        TCGA-IB-A5SQ        TCGA-IB-A5SS 
"RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" 
       TCGA-IB-A5ST        TCGA-IB-A6UG        TCGA-LB-A7SX        TCGA-OE-A75W 
"RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" 
       TCGA-PZ-A5RE        TCGA-Q3-A5QY        TCGA-US-A779        TCGA-US-A77E 
"RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" 
       TCGA-US-A77J 
"RARRES3 WILD-TYPE" 
       TCGA-F2-6879        TCGA-F2-6880        TCGA-F2-7273        TCGA-F2-7276 
"RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" 
       TCGA-F2-A44G        TCGA-F2-A44H        TCGA-FB-A4P5        TCGA-FB-A4P6 
"RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" 
       TCGA-FB-A545        TCGA-FB-A5VM        TCGA-FB-A78T        TCGA-FB-A7DR 
"RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" 
       TCGA-FZ-5920        TCGA-FZ-5922        TCGA-FZ-5923        TCGA-H6-8124 
"RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" 
       TCGA-H6-A45N        TCGA-H8-A6C1        TCGA-HZ-7289        TCGA-HZ-7918 
"RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" 
       TCGA-HZ-7919        TCGA-HZ-7922        TCGA-HZ-7923        TCGA-HZ-7924 
"RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" 
       TCGA-HZ-7925        TCGA-HZ-7926        TCGA-HZ-8001        TCGA-HZ-8002 
"RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" 
       TCGA-HZ-8003        TCGA-HZ-8005        TCGA-HZ-8315        TCGA-HZ-8317 
"RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" 
       TCGA-HZ-8636        TCGA-HZ-8638        TCGA-HZ-A49G        TCGA-HZ-A49H 
"RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE"   "RARRES3 MUTATED" "RARRES3 WILD-TYPE" 
       TCGA-HZ-A4BH        TCGA-HZ-A4BK        TCGA-IB-7644        TCGA-IB-7645 
  "RARRES3 MUTATED" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" 
       TCGA-IB-7646        TCGA-IB-7647        TCGA-IB-7649        TCGA-IB-7651 
"RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE"   "RARRES3 MUTATED" 
       TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-7886        TCGA-IB-7887 
"RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" 
       TCGA-IB-7888        TCGA-IB-7889        TCGA-IB-7890        TCGA-IB-7891 
"RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" 
       TCGA-IB-7893        TCGA-IB-7897        TCGA-IB-8126        TCGA-IB-8127 
"RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" 
       TCGA-IB-A5SO        TCGA-IB-A5SP        TCGA-IB-A5SQ        TCGA-IB-A5SS 
"RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" 
       TCGA-IB-A5ST        TCGA-IB-A6UG        TCGA-LB-A7SX        TCGA-OE-A75W 
"RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" 
       TCGA-PZ-A5RE        TCGA-Q3-A5QY        TCGA-US-A779        TCGA-US-A77E 
"RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" 
       TCGA-US-A77J 
"RARRES3 WILD-TYPE" 
       TCGA-F2-6879        TCGA-F2-6880        TCGA-F2-7273        TCGA-F2-7276 
"RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" 
       TCGA-F2-A44G        TCGA-F2-A44H        TCGA-FB-A4P5        TCGA-FB-A4P6 
"RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" 
       TCGA-FB-A545        TCGA-FB-A5VM        TCGA-FB-A78T        TCGA-FB-A7DR 
"RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" 
       TCGA-FZ-5920        TCGA-FZ-5922        TCGA-FZ-5923        TCGA-H6-8124 
"RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" 
       TCGA-H6-A45N        TCGA-H8-A6C1        TCGA-HZ-7289        TCGA-HZ-7918 
"RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" 
       TCGA-HZ-7919        TCGA-HZ-7922        TCGA-HZ-7923        TCGA-HZ-7924 
"RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" 
       TCGA-HZ-7925        TCGA-HZ-7926        TCGA-HZ-8001        TCGA-HZ-8002 
"RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" 
       TCGA-HZ-8003        TCGA-HZ-8005        TCGA-HZ-8315        TCGA-HZ-8317 
"RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" 
       TCGA-HZ-8636        TCGA-HZ-8638        TCGA-HZ-A49G        TCGA-HZ-A49H 
"RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE"   "RARRES3 MUTATED" "RARRES3 WILD-TYPE" 
       TCGA-HZ-A4BH        TCGA-HZ-A4BK        TCGA-IB-7644        TCGA-IB-7645 
  "RARRES3 MUTATED" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" 
       TCGA-IB-7646        TCGA-IB-7647        TCGA-IB-7649        TCGA-IB-7651 
"RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE"   "RARRES3 MUTATED" 
       TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-7886        TCGA-IB-7887 
"RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" 
       TCGA-IB-7888        TCGA-IB-7889        TCGA-IB-7890        TCGA-IB-7891 
"RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" 
       TCGA-IB-7893        TCGA-IB-7897        TCGA-IB-8126        TCGA-IB-8127 
"RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" 
       TCGA-IB-A5SO        TCGA-IB-A5SP        TCGA-IB-A5SQ        TCGA-IB-A5SS 
"RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" 
       TCGA-IB-A5ST        TCGA-IB-A6UG        TCGA-LB-A7SX        TCGA-OE-A75W 
"RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" 
       TCGA-PZ-A5RE        TCGA-Q3-A5QY        TCGA-US-A779        TCGA-US-A77E 
"RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" 
       TCGA-US-A77J 
"RARRES3 WILD-TYPE" 
[1] "hr=" "1.4"
D442V2, continuous
                   vv
clus                STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  RARRES3 MUTATED          0        0         0         3         0        0
  RARRES3 WILD-TYPE        1        4        11        48         2        3
D442V3, multiclass
                   vv
clus                T1+T2 T3+T4
  RARRES3 MUTATED       1     2
  RARRES3 WILD-TYPE     5    64
D442V4, multiclass
       clus
vv      RARRES3 MUTATED RARRES3 WILD-TYPE
  T1+T2               1                 5
  T3+T4               2                64
D442V5, binary
                   cls
clus                 0  1
  RARRES3 MUTATED    0  3
  RARRES3 WILD-TYPE 17 51
[1] "tbl2"
                   cls
clus                [,1] [,2]
  RARRES3 MUTATED      0    3
  RARRES3 WILD-TYPE   17   51
   clus
vv  RARRES3 MUTATED RARRES3 WILD-TYPE
  0               0                17
  1               3                51
                   vv
clus                M0 M1 MX
  RARRES3 MUTATED    1  0  2
  RARRES3 WILD-TYPE 38  3 28
D442V6, multiclass
    clus
vv   RARRES3 MUTATED RARRES3 WILD-TYPE
  M0               1                38
  M1               0                 3
  MX               2                28
D442V7, binary
                   cls
clus                 0  1
  RARRES3 MUTATED    2  1
  RARRES3 WILD-TYPE 34 35
[1] "tbl2"
                   cls
clus                [,1] [,2]
  RARRES3 MUTATED      2    1
  RARRES3 WILD-TYPE   34   35
        clus
vv       RARRES3 MUTATED RARRES3 WILD-TYPE
  FEMALE               2                34
  MALE                 1                35
                   vv
clus                PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  RARRES3 MUTATED                                     3
  RARRES3 WILD-TYPE                                  62
                   vv
clus                PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  RARRES3 MUTATED                                       0
  RARRES3 WILD-TYPE                                     4
                   vv
clus                PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  RARRES3 MUTATED                                                  0
  RARRES3 WILD-TYPE                                                2
D442V8, multiclass
                                                  clus
vv                                                 RARRES3 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                            3
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                          0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA               0
                                                  clus
vv                                                 RARRES3 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                             62
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                            4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                 2
D442V9, continuous
[1] "Remove cluster labels:" "RARRES3 MUTATED"       
clus
  RARRES3 MUTATED RARRES3 WILD-TYPE 
                1                21 
       TCGA-F2-6880        TCGA-FB-A4P5        TCGA-FB-A4P6        TCGA-FB-A5VM 
"RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" 
       TCGA-FB-A78T        TCGA-FB-A7DR        TCGA-H6-8124        TCGA-H6-A45N 
"RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" 
       TCGA-H8-A6C1        TCGA-IB-7644        TCGA-IB-7649        TCGA-IB-7885 
"RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" 
       TCGA-IB-7886        TCGA-IB-7887        TCGA-IB-7891        TCGA-IB-8126 
"RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" 
       TCGA-IB-8127        TCGA-IB-A5SS        TCGA-IB-A6UG        TCGA-LB-A7SX 
"RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" 
       TCGA-OE-A75W 
"RARRES3 WILD-TYPE" 
D442V10, continuous
[1] "Remove cluster labels:" "RARRES3 MUTATED"       
clus
  RARRES3 MUTATED RARRES3 WILD-TYPE 
                1                18 
       TCGA-FB-A4P5        TCGA-FB-A4P6        TCGA-FB-A5VM        TCGA-FB-A78T 
"RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" 
       TCGA-FB-A7DR        TCGA-H6-8124        TCGA-H8-A6C1        TCGA-IB-7644 
"RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" 
       TCGA-IB-7649        TCGA-IB-7885        TCGA-IB-7886        TCGA-IB-7891 
"RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" 
       TCGA-IB-8126        TCGA-IB-8127        TCGA-IB-A5SS        TCGA-IB-A6UG 
"RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" 
       TCGA-LB-A7SX        TCGA-OE-A75W 
"RARRES3 WILD-TYPE" "RARRES3 WILD-TYPE" 
                   vv
clus                R0 R1 RX
  RARRES3 MUTATED    1  2  0
  RARRES3 WILD-TYPE 41 22  2
D442V11, multiclass
    clus
vv   RARRES3 MUTATED RARRES3 WILD-TYPE
  R0               1                41
  R1               2                22
  RX               0                 2
D442V12, continuous

Clustering(443) Variable = MESDC2 MUTATION ANALYSIS
D443V1, survival
                  sevent
clus2               0  1
  MESDC2 MUTATED    4  0
  MESDC2 WILD-TYPE 36 29
  MESDC2 MUTATED MESDC2 WILD-TYPE 
               4               65 
  MESDC2 MUTATED MESDC2 WILD-TYPE 
               0               29 
$`MESDC2 MUTATED`
TCGA-HZ-8003 TCGA-IB-8126 TCGA-OE-A75W TCGA-PZ-A5RE 
        0.69         0.56         3.62         8.12 

$`MESDC2 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P5 TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR 
        0.13        11.93        12.66         2.47         0.03         5.46 
TCGA-FZ-5920 TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 
        2.01        36.20        20.81        12.89         7.66        13.02 
TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 
        7.89         0.92         0.66         0.13         0.26        12.13 
TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8005 TCGA-HZ-8315 
       11.87         0.26         0.62         0.79         3.95         0.92 
TCGA-HZ-8317 TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH 
        0.53         0.16         2.99         0.76         0.95         6.38 
TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 
        1.51        11.41        49.38         4.77        21.90        15.35 
TCGA-IB-7651 TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7888 
       19.82        15.65        27.98         4.04         3.62        43.79 
TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-8127 
       15.81        19.66        16.04         3.85        15.98        17.16 
TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG 
       10.82         9.86         7.20        15.12         0.26         1.35 
TCGA-LB-A7SX TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
        4.18        13.68        16.80        14.14        18.67 

  MESDC2 MUTATED MESDC2 WILD-TYPE 
            0.56             0.03 
  MESDC2 MUTATED MESDC2 WILD-TYPE 
            8.12            49.38 
  MESDC2 MUTATED MESDC2 WILD-TYPE 
           2.155            7.890 
[1] "0.6 - 8.1 (2.2)"  "0.0 - 49.4 (7.9)"
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
"MESDC2 WILD-TYPE" "MESDC2 WILD-TYPE" "MESDC2 WILD-TYPE" "MESDC2 WILD-TYPE" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"MESDC2 WILD-TYPE" "MESDC2 WILD-TYPE" "MESDC2 WILD-TYPE" "MESDC2 WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
"MESDC2 WILD-TYPE" "MESDC2 WILD-TYPE" "MESDC2 WILD-TYPE" "MESDC2 WILD-TYPE" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"MESDC2 WILD-TYPE" "MESDC2 WILD-TYPE" "MESDC2 WILD-TYPE" "MESDC2 WILD-TYPE" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
"MESDC2 WILD-TYPE" "MESDC2 WILD-TYPE" "MESDC2 WILD-TYPE" "MESDC2 WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
"MESDC2 WILD-TYPE" "MESDC2 WILD-TYPE" "MESDC2 WILD-TYPE" "MESDC2 WILD-TYPE" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"MESDC2 WILD-TYPE" "MESDC2 WILD-TYPE" "MESDC2 WILD-TYPE" "MESDC2 WILD-TYPE" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
  "MESDC2 MUTATED" "MESDC2 WILD-TYPE" "MESDC2 WILD-TYPE" "MESDC2 WILD-TYPE" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
"MESDC2 WILD-TYPE" "MESDC2 WILD-TYPE" "MESDC2 WILD-TYPE" "MESDC2 WILD-TYPE" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
"MESDC2 WILD-TYPE" "MESDC2 WILD-TYPE" "MESDC2 WILD-TYPE" "MESDC2 WILD-TYPE" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
"MESDC2 WILD-TYPE" "MESDC2 WILD-TYPE" "MESDC2 WILD-TYPE" "MESDC2 WILD-TYPE" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
"MESDC2 WILD-TYPE" "MESDC2 WILD-TYPE" "MESDC2 WILD-TYPE" "MESDC2 WILD-TYPE" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
"MESDC2 WILD-TYPE" "MESDC2 WILD-TYPE" "MESDC2 WILD-TYPE" "MESDC2 WILD-TYPE" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
"MESDC2 WILD-TYPE" "MESDC2 WILD-TYPE"   "MESDC2 MUTATED" "MESDC2 WILD-TYPE" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"MESDC2 WILD-TYPE" "MESDC2 WILD-TYPE" "MESDC2 WILD-TYPE" "MESDC2 WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"MESDC2 WILD-TYPE" "MESDC2 WILD-TYPE" "MESDC2 WILD-TYPE"   "MESDC2 MUTATED" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
  "MESDC2 MUTATED" "MESDC2 WILD-TYPE" "MESDC2 WILD-TYPE" "MESDC2 WILD-TYPE" 
      TCGA-US-A77J 
"MESDC2 WILD-TYPE" 
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
"MESDC2 WILD-TYPE" "MESDC2 WILD-TYPE" "MESDC2 WILD-TYPE" "MESDC2 WILD-TYPE" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"MESDC2 WILD-TYPE" "MESDC2 WILD-TYPE" "MESDC2 WILD-TYPE" "MESDC2 WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
"MESDC2 WILD-TYPE" "MESDC2 WILD-TYPE" "MESDC2 WILD-TYPE" "MESDC2 WILD-TYPE" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"MESDC2 WILD-TYPE" "MESDC2 WILD-TYPE" "MESDC2 WILD-TYPE" "MESDC2 WILD-TYPE" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
"MESDC2 WILD-TYPE" "MESDC2 WILD-TYPE" "MESDC2 WILD-TYPE" "MESDC2 WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
"MESDC2 WILD-TYPE" "MESDC2 WILD-TYPE" "MESDC2 WILD-TYPE" "MESDC2 WILD-TYPE" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"MESDC2 WILD-TYPE" "MESDC2 WILD-TYPE" "MESDC2 WILD-TYPE" "MESDC2 WILD-TYPE" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
  "MESDC2 MUTATED" "MESDC2 WILD-TYPE" "MESDC2 WILD-TYPE" "MESDC2 WILD-TYPE" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
"MESDC2 WILD-TYPE" "MESDC2 WILD-TYPE" "MESDC2 WILD-TYPE" "MESDC2 WILD-TYPE" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
"MESDC2 WILD-TYPE" "MESDC2 WILD-TYPE" "MESDC2 WILD-TYPE" "MESDC2 WILD-TYPE" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
"MESDC2 WILD-TYPE" "MESDC2 WILD-TYPE" "MESDC2 WILD-TYPE" "MESDC2 WILD-TYPE" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
"MESDC2 WILD-TYPE" "MESDC2 WILD-TYPE" "MESDC2 WILD-TYPE" "MESDC2 WILD-TYPE" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
"MESDC2 WILD-TYPE" "MESDC2 WILD-TYPE" "MESDC2 WILD-TYPE" "MESDC2 WILD-TYPE" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
"MESDC2 WILD-TYPE" "MESDC2 WILD-TYPE"   "MESDC2 MUTATED" "MESDC2 WILD-TYPE" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"MESDC2 WILD-TYPE" "MESDC2 WILD-TYPE" "MESDC2 WILD-TYPE" "MESDC2 WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"MESDC2 WILD-TYPE" "MESDC2 WILD-TYPE" "MESDC2 WILD-TYPE"   "MESDC2 MUTATED" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
  "MESDC2 MUTATED" "MESDC2 WILD-TYPE" "MESDC2 WILD-TYPE" "MESDC2 WILD-TYPE" 
      TCGA-US-A77J 
"MESDC2 WILD-TYPE" 
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
"MESDC2 WILD-TYPE" "MESDC2 WILD-TYPE" "MESDC2 WILD-TYPE" "MESDC2 WILD-TYPE" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"MESDC2 WILD-TYPE" "MESDC2 WILD-TYPE" "MESDC2 WILD-TYPE" "MESDC2 WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
"MESDC2 WILD-TYPE" "MESDC2 WILD-TYPE" "MESDC2 WILD-TYPE" "MESDC2 WILD-TYPE" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"MESDC2 WILD-TYPE" "MESDC2 WILD-TYPE" "MESDC2 WILD-TYPE" "MESDC2 WILD-TYPE" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
"MESDC2 WILD-TYPE" "MESDC2 WILD-TYPE" "MESDC2 WILD-TYPE" "MESDC2 WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
"MESDC2 WILD-TYPE" "MESDC2 WILD-TYPE" "MESDC2 WILD-TYPE" "MESDC2 WILD-TYPE" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"MESDC2 WILD-TYPE" "MESDC2 WILD-TYPE" "MESDC2 WILD-TYPE" "MESDC2 WILD-TYPE" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
  "MESDC2 MUTATED" "MESDC2 WILD-TYPE" "MESDC2 WILD-TYPE" "MESDC2 WILD-TYPE" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
"MESDC2 WILD-TYPE" "MESDC2 WILD-TYPE" "MESDC2 WILD-TYPE" "MESDC2 WILD-TYPE" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
"MESDC2 WILD-TYPE" "MESDC2 WILD-TYPE" "MESDC2 WILD-TYPE" "MESDC2 WILD-TYPE" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
"MESDC2 WILD-TYPE" "MESDC2 WILD-TYPE" "MESDC2 WILD-TYPE" "MESDC2 WILD-TYPE" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
"MESDC2 WILD-TYPE" "MESDC2 WILD-TYPE" "MESDC2 WILD-TYPE" "MESDC2 WILD-TYPE" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
"MESDC2 WILD-TYPE" "MESDC2 WILD-TYPE" "MESDC2 WILD-TYPE" "MESDC2 WILD-TYPE" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
"MESDC2 WILD-TYPE" "MESDC2 WILD-TYPE"   "MESDC2 MUTATED" "MESDC2 WILD-TYPE" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"MESDC2 WILD-TYPE" "MESDC2 WILD-TYPE" "MESDC2 WILD-TYPE" "MESDC2 WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"MESDC2 WILD-TYPE" "MESDC2 WILD-TYPE" "MESDC2 WILD-TYPE"   "MESDC2 MUTATED" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
  "MESDC2 MUTATED" "MESDC2 WILD-TYPE" "MESDC2 WILD-TYPE" "MESDC2 WILD-TYPE" 
      TCGA-US-A77J 
"MESDC2 WILD-TYPE" 
[1] "hr="     "9400000"
D443V2, continuous
                  vv
clus               STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  MESDC2 MUTATED          0        0         1         2         1        0
  MESDC2 WILD-TYPE        1        4        10        49         1        3
D443V3, multiclass
                  vv
clus               T1+T2 T3+T4
  MESDC2 MUTATED       0     4
  MESDC2 WILD-TYPE     6    62
D443V4, multiclass
       clus
vv      MESDC2 MUTATED MESDC2 WILD-TYPE
  T1+T2              0                6
  T3+T4              4               62
D443V5, binary
                  cls
clus                0  1
  MESDC2 MUTATED    1  3
  MESDC2 WILD-TYPE 16 51
[1] "tbl2"
                  cls
clus               [,1] [,2]
  MESDC2 MUTATED      1    3
  MESDC2 WILD-TYPE   16   51
   clus
vv  MESDC2 MUTATED MESDC2 WILD-TYPE
  0              1               16
  1              3               51
                  vv
clus               M0 M1 MX
  MESDC2 MUTATED    2  0  2
  MESDC2 WILD-TYPE 37  3 28
D443V6, multiclass
    clus
vv   MESDC2 MUTATED MESDC2 WILD-TYPE
  M0              2               37
  M1              0                3
  MX              2               28
D443V7, binary
                  cls
clus                0  1
  MESDC2 MUTATED    3  1
  MESDC2 WILD-TYPE 33 35
[1] "tbl2"
                  cls
clus               [,1] [,2]
  MESDC2 MUTATED      3    1
  MESDC2 WILD-TYPE   33   35
        clus
vv       MESDC2 MUTATED MESDC2 WILD-TYPE
  FEMALE              3               33
  MALE                1               35
                  vv
clus               PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  MESDC2 MUTATED                                     4
  MESDC2 WILD-TYPE                                  61
                  vv
clus               PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  MESDC2 MUTATED                                       0
  MESDC2 WILD-TYPE                                     4
                  vv
clus               PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  MESDC2 MUTATED                                                  0
  MESDC2 WILD-TYPE                                                2
D443V8, multiclass
                                                  clus
vv                                                 MESDC2 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                           4
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                         0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA              0
                                                  clus
vv                                                 MESDC2 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                            61
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                           4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                2
D443V9, continuous
[1] "Remove cluster labels:" "MESDC2 MUTATED"        
clus
  MESDC2 MUTATED MESDC2 WILD-TYPE 
               2               20 
      TCGA-F2-6880       TCGA-FB-A4P5       TCGA-FB-A4P6       TCGA-FB-A5VM 
"MESDC2 WILD-TYPE" "MESDC2 WILD-TYPE" "MESDC2 WILD-TYPE" "MESDC2 WILD-TYPE" 
      TCGA-FB-A78T       TCGA-FB-A7DR       TCGA-H6-8124       TCGA-H6-A45N 
"MESDC2 WILD-TYPE" "MESDC2 WILD-TYPE" "MESDC2 WILD-TYPE" "MESDC2 WILD-TYPE" 
      TCGA-H8-A6C1       TCGA-IB-7644       TCGA-IB-7649       TCGA-IB-7651 
"MESDC2 WILD-TYPE" "MESDC2 WILD-TYPE" "MESDC2 WILD-TYPE" "MESDC2 WILD-TYPE" 
      TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887       TCGA-IB-7891 
"MESDC2 WILD-TYPE" "MESDC2 WILD-TYPE" "MESDC2 WILD-TYPE" "MESDC2 WILD-TYPE" 
      TCGA-IB-8127       TCGA-IB-A5SS       TCGA-IB-A6UG       TCGA-LB-A7SX 
"MESDC2 WILD-TYPE" "MESDC2 WILD-TYPE" "MESDC2 WILD-TYPE" "MESDC2 WILD-TYPE" 
D443V10, continuous
[1] "Remove cluster labels:" "MESDC2 MUTATED"        
clus
  MESDC2 MUTATED MESDC2 WILD-TYPE 
               2               17 
      TCGA-FB-A4P5       TCGA-FB-A4P6       TCGA-FB-A5VM       TCGA-FB-A78T 
"MESDC2 WILD-TYPE" "MESDC2 WILD-TYPE" "MESDC2 WILD-TYPE" "MESDC2 WILD-TYPE" 
      TCGA-FB-A7DR       TCGA-H6-8124       TCGA-H8-A6C1       TCGA-IB-7644 
"MESDC2 WILD-TYPE" "MESDC2 WILD-TYPE" "MESDC2 WILD-TYPE" "MESDC2 WILD-TYPE" 
      TCGA-IB-7649       TCGA-IB-7651       TCGA-IB-7885       TCGA-IB-7886 
"MESDC2 WILD-TYPE" "MESDC2 WILD-TYPE" "MESDC2 WILD-TYPE" "MESDC2 WILD-TYPE" 
      TCGA-IB-7891       TCGA-IB-8127       TCGA-IB-A5SS       TCGA-IB-A6UG 
"MESDC2 WILD-TYPE" "MESDC2 WILD-TYPE" "MESDC2 WILD-TYPE" "MESDC2 WILD-TYPE" 
      TCGA-LB-A7SX 
"MESDC2 WILD-TYPE" 
                  vv
clus               R0 R1 RX
  MESDC2 MUTATED    2  1  0
  MESDC2 WILD-TYPE 40 23  2
D443V11, multiclass
    clus
vv   MESDC2 MUTATED MESDC2 WILD-TYPE
  R0              2               40
  R1              1               23
  RX              0                2
D443V12, continuous

Clustering(444) Variable = CRIPAK MUTATION ANALYSIS
D444V1, survival
                  sevent
clus2               0  1
  CRIPAK MUTATED    3  0
  CRIPAK WILD-TYPE 37 29
  CRIPAK MUTATED CRIPAK WILD-TYPE 
               3               66 
  CRIPAK MUTATED CRIPAK WILD-TYPE 
               0               29 
$`CRIPAK MUTATED`
TCGA-H8-A6C1 TCGA-HZ-7924 TCGA-HZ-8317 
       13.02        12.13         0.53 

$`CRIPAK WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P5 TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR 
        0.13        11.93        12.66         2.47         0.03         5.46 
TCGA-FZ-5920 TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-HZ-7289 
        2.01        36.20        20.81        12.89         7.66         7.89 
TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7925 TCGA-HZ-7926 
        0.92         0.66         0.13         0.26        11.87         0.26 
TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8636 
        0.62         0.79         0.69         3.95         0.92         0.16 
TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 
        2.99         0.76         0.95         6.38         1.51        11.41 
TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7651 TCGA-IB-7652 
       49.38         4.77        21.90        15.35        19.82        15.65 
TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 
       27.98         4.04         3.62        43.79        15.81        19.66 
TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO 
       16.04         3.85        15.98         0.56        17.16        10.82 
TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX 
        9.86         7.20        15.12         0.26         1.35         4.18 
TCGA-OE-A75W TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
        3.62         8.12        13.68        16.80        14.14        18.67 

  CRIPAK MUTATED CRIPAK WILD-TYPE 
            0.53             0.03 
  CRIPAK MUTATED CRIPAK WILD-TYPE 
           13.02            49.38 
  CRIPAK MUTATED CRIPAK WILD-TYPE 
           12.13             7.43 
[1] "0.5 - 13.0 (12.1)" "0.0 - 49.4 (7.4)" 
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
"CRIPAK WILD-TYPE"   "CRIPAK MUTATED" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE"   "CRIPAK MUTATED" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE"   "CRIPAK MUTATED" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-US-A77J 
"CRIPAK WILD-TYPE" 
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
"CRIPAK WILD-TYPE"   "CRIPAK MUTATED" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE"   "CRIPAK MUTATED" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE"   "CRIPAK MUTATED" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-US-A77J 
"CRIPAK WILD-TYPE" 
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
"CRIPAK WILD-TYPE"   "CRIPAK MUTATED" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE"   "CRIPAK MUTATED" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE"   "CRIPAK MUTATED" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-US-A77J 
"CRIPAK WILD-TYPE" 
[1] "hr="     "2.6e+07"
D444V2, continuous
                  vv
clus               STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  CRIPAK MUTATED          0        0         2         1         0        0
  CRIPAK WILD-TYPE        1        4         9        50         2        3
D444V3, multiclass
                  vv
clus               T1+T2 T3+T4
  CRIPAK MUTATED       0     3
  CRIPAK WILD-TYPE     6    63
D444V4, multiclass
       clus
vv      CRIPAK MUTATED CRIPAK WILD-TYPE
  T1+T2              0                6
  T3+T4              3               63
D444V5, binary
                  cls
clus                0  1
  CRIPAK MUTATED    2  1
  CRIPAK WILD-TYPE 15 53
[1] "tbl2"
                  cls
clus               [,1] [,2]
  CRIPAK MUTATED      2    1
  CRIPAK WILD-TYPE   15   53
   clus
vv  CRIPAK MUTATED CRIPAK WILD-TYPE
  0              2               15
  1              1               53
                  vv
clus               M0 M1 MX
  CRIPAK MUTATED    0  0  3
  CRIPAK WILD-TYPE 39  3 27
D444V6, multiclass
    clus
vv   CRIPAK MUTATED CRIPAK WILD-TYPE
  M0              0               39
  M1              0                3
  MX              3               27
D444V7, binary
                  cls
clus                0  1
  CRIPAK MUTATED    2  1
  CRIPAK WILD-TYPE 34 35
[1] "tbl2"
                  cls
clus               [,1] [,2]
  CRIPAK MUTATED      2    1
  CRIPAK WILD-TYPE   34   35
        clus
vv       CRIPAK MUTATED CRIPAK WILD-TYPE
  FEMALE              2               34
  MALE                1               35
                  vv
clus               PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  CRIPAK MUTATED                                     2
  CRIPAK WILD-TYPE                                  63
                  vv
clus               PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  CRIPAK MUTATED                                       1
  CRIPAK WILD-TYPE                                     3
                  vv
clus               PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  CRIPAK MUTATED                                                  0
  CRIPAK WILD-TYPE                                                2
D444V8, multiclass
                                                  clus
vv                                                 CRIPAK MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                           2
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                         1
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA              0
                                                  clus
vv                                                 CRIPAK WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                            63
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                           3
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                2
D444V9, continuous
[1] "Remove cluster labels:" "CRIPAK MUTATED"        
clus
  CRIPAK MUTATED CRIPAK WILD-TYPE 
               1               21 
      TCGA-F2-6880       TCGA-FB-A4P5       TCGA-FB-A4P6       TCGA-FB-A5VM 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-FB-A78T       TCGA-FB-A7DR       TCGA-H6-8124       TCGA-H6-A45N 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-IB-7644       TCGA-IB-7649       TCGA-IB-7651       TCGA-IB-7885 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-IB-7886       TCGA-IB-7887       TCGA-IB-7891       TCGA-IB-8126 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-IB-8127       TCGA-IB-A5SS       TCGA-IB-A6UG       TCGA-LB-A7SX 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-OE-A75W 
"CRIPAK WILD-TYPE" 
D444V10, continuous
[1] "Remove cluster labels:" "CRIPAK MUTATED"        
clus
  CRIPAK MUTATED CRIPAK WILD-TYPE 
               1               18 
      TCGA-FB-A4P5       TCGA-FB-A4P6       TCGA-FB-A5VM       TCGA-FB-A78T 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-FB-A7DR       TCGA-H6-8124       TCGA-IB-7644       TCGA-IB-7649 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-IB-7651       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7891 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-IB-8126       TCGA-IB-8127       TCGA-IB-A5SS       TCGA-IB-A6UG 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-LB-A7SX       TCGA-OE-A75W 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
                  vv
clus               R0 R1 RX
  CRIPAK MUTATED    2  1  0
  CRIPAK WILD-TYPE 40 23  2
D444V11, multiclass
    clus
vv   CRIPAK MUTATED CRIPAK WILD-TYPE
  R0              2               40
  R1              1               23
  RX              0                2
D444V12, continuous

Clustering(445) Variable = LILRB5 MUTATION ANALYSIS
D445V1, survival
                  sevent
clus2               0  1
  LILRB5 MUTATED    5  1
  LILRB5 WILD-TYPE 35 28
  LILRB5 MUTATED LILRB5 WILD-TYPE 
               6               63 
  LILRB5 MUTATED LILRB5 WILD-TYPE 
               1               28 
$`LILRB5 MUTATED`
TCGA-FB-A5VM TCGA-HZ-8317 TCGA-HZ-8638 TCGA-HZ-A49H TCGA-IB-7651 TCGA-IB-8127 
        2.47         0.53         2.99         0.95        19.82        17.16 

$`LILRB5 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P5 TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A78T TCGA-FB-A7DR TCGA-FZ-5920 
        0.13        11.93        12.66         0.03         5.46         2.01 
TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7289 
       36.20        20.81        12.89         7.66        13.02         7.89 
TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 
        0.92         0.66         0.13         0.26        12.13        11.87 
TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 
        0.26         0.62         0.79         0.69         3.95         0.92 
TCGA-HZ-8636 TCGA-HZ-A49G TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7645 
        0.16         0.76         6.38         1.51        11.41        49.38 
TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7886 
        4.77        21.90        15.35        15.65        27.98         4.04 
TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-7893 
        3.62        43.79        15.81        19.66        16.04         3.85 
TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS 
       15.98         0.56        10.82         9.86         7.20        15.12 
TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W TCGA-PZ-A5RE TCGA-Q3-A5QY 
        0.26         1.35         4.18         3.62         8.12        13.68 
TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
       16.80        14.14        18.67 

  LILRB5 MUTATED LILRB5 WILD-TYPE 
            0.53             0.03 
  LILRB5 MUTATED LILRB5 WILD-TYPE 
           19.82            49.38 
  LILRB5 MUTATED LILRB5 WILD-TYPE 
            2.73             7.89 
[1] "0.5 - 19.8 (2.7)" "0.0 - 49.4 (7.9)"
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
"LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
"LILRB5 WILD-TYPE"   "LILRB5 MUTATED" "LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
"LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
"LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
"LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE"   "LILRB5 MUTATED" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
"LILRB5 WILD-TYPE"   "LILRB5 MUTATED" "LILRB5 WILD-TYPE"   "LILRB5 MUTATED" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
"LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
"LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE"   "LILRB5 MUTATED" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
"LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
"LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
"LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE"   "LILRB5 MUTATED" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
"LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" 
      TCGA-US-A77J 
"LILRB5 WILD-TYPE" 
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
"LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
"LILRB5 WILD-TYPE"   "LILRB5 MUTATED" "LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
"LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
"LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
"LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE"   "LILRB5 MUTATED" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
"LILRB5 WILD-TYPE"   "LILRB5 MUTATED" "LILRB5 WILD-TYPE"   "LILRB5 MUTATED" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
"LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
"LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE"   "LILRB5 MUTATED" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
"LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
"LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
"LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE"   "LILRB5 MUTATED" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
"LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" 
      TCGA-US-A77J 
"LILRB5 WILD-TYPE" 
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
"LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
"LILRB5 WILD-TYPE"   "LILRB5 MUTATED" "LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
"LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
"LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
"LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE"   "LILRB5 MUTATED" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
"LILRB5 WILD-TYPE"   "LILRB5 MUTATED" "LILRB5 WILD-TYPE"   "LILRB5 MUTATED" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
"LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
"LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE"   "LILRB5 MUTATED" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
"LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
"LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
"LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE"   "LILRB5 MUTATED" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
"LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" 
      TCGA-US-A77J 
"LILRB5 WILD-TYPE" 
[1] "hr=" "2.2"
D445V2, continuous
                  vv
clus               STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  LILRB5 MUTATED          1        2         0         4         0        0
  LILRB5 WILD-TYPE        0        2        11        47         2        3
D445V3, multiclass
                  vv
clus               T1+T2 T3+T4
  LILRB5 MUTATED       3     4
  LILRB5 WILD-TYPE     3    62
D445V4, multiclass
       clus
vv      LILRB5 MUTATED LILRB5 WILD-TYPE
  T1+T2              3                3
  T3+T4              4               62
D445V5, binary
                  cls
clus                0  1
  LILRB5 MUTATED    3  4
  LILRB5 WILD-TYPE 14 50
[1] "tbl2"
                  cls
clus               [,1] [,2]
  LILRB5 MUTATED      3    4
  LILRB5 WILD-TYPE   14   50
   clus
vv  LILRB5 MUTATED LILRB5 WILD-TYPE
  0              3               14
  1              4               50
                  vv
clus               M0 M1 MX
  LILRB5 MUTATED    3  0  4
  LILRB5 WILD-TYPE 36  3 26
D445V6, multiclass
    clus
vv   LILRB5 MUTATED LILRB5 WILD-TYPE
  M0              3               36
  M1              0                3
  MX              4               26
D445V7, binary
                  cls
clus                0  1
  LILRB5 MUTATED    4  3
  LILRB5 WILD-TYPE 32 33
[1] "tbl2"
                  cls
clus               [,1] [,2]
  LILRB5 MUTATED      4    3
  LILRB5 WILD-TYPE   32   33
        clus
vv       LILRB5 MUTATED LILRB5 WILD-TYPE
  FEMALE              4               32
  MALE                3               33
                  vv
clus               PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  LILRB5 MUTATED                                     6
  LILRB5 WILD-TYPE                                  59
                  vv
clus               PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  LILRB5 MUTATED                                       0
  LILRB5 WILD-TYPE                                     4
                  vv
clus               PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  LILRB5 MUTATED                                                  1
  LILRB5 WILD-TYPE                                                1
D445V8, multiclass
                                                  clus
vv                                                 LILRB5 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                           6
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                         0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA              1
                                                  clus
vv                                                 LILRB5 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                            59
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                           4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                1
D445V9, continuous
D445V10, continuous
                  vv
clus               R0 R1 RX
  LILRB5 MUTATED    5  2  0
  LILRB5 WILD-TYPE 37 22  2
D445V11, multiclass
    clus
vv   LILRB5 MUTATED LILRB5 WILD-TYPE
  R0              5               37
  R1              2               22
  RX              0                2
D445V12, continuous

Clustering(446) Variable = KIAA1967 MUTATION ANALYSIS
D446V1, survival
                    sevent
clus2                 0  1
  KIAA1967 MUTATED    0  4
  KIAA1967 WILD-TYPE 40 25
  KIAA1967 MUTATED KIAA1967 WILD-TYPE 
                 4                 65 
  KIAA1967 MUTATED KIAA1967 WILD-TYPE 
                 4                 25 
$`KIAA1967 MUTATED`
TCGA-HZ-8005 TCGA-IB-7645 TCGA-IB-7651 TCGA-IB-7893 
        3.95        49.38        19.82         3.85 

$`KIAA1967 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P5 TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR 
        0.13        11.93        12.66         2.47         0.03         5.46 
TCGA-FZ-5920 TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 
        2.01        36.20        20.81        12.89         7.66        13.02 
TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 
        7.89         0.92         0.66         0.13         0.26        12.13 
TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8315 
       11.87         0.26         0.62         0.79         0.69         0.92 
TCGA-HZ-8317 TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH 
        0.53         0.16         2.99         0.76         0.95         6.38 
TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7652 
        1.51        11.41         4.77        21.90        15.35        15.65 
TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 
       27.98         4.04         3.62        43.79        15.81        19.66 
TCGA-IB-7891 TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP 
       16.04        15.98         0.56        17.16        10.82         9.86 
TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W 
        7.20        15.12         0.26         1.35         4.18         3.62 
TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
        8.12        13.68        16.80        14.14        18.67 

  KIAA1967 MUTATED KIAA1967 WILD-TYPE 
              3.85               0.03 
  KIAA1967 MUTATED KIAA1967 WILD-TYPE 
             49.38              43.79 
  KIAA1967 MUTATED KIAA1967 WILD-TYPE 
            11.885              7.660 
[1] "3.9 - 49.4 (11.9)" "0.0 - 43.8 (7.7)" 
        TCGA-F2-6879         TCGA-F2-6880         TCGA-F2-7273 
"KIAA1967 WILD-TYPE" "KIAA1967 WILD-TYPE" "KIAA1967 WILD-TYPE" 
        TCGA-F2-7276         TCGA-F2-A44G         TCGA-F2-A44H 
"KIAA1967 WILD-TYPE" "KIAA1967 WILD-TYPE" "KIAA1967 WILD-TYPE" 
        TCGA-FB-A4P5         TCGA-FB-A4P6         TCGA-FB-A545 
"KIAA1967 WILD-TYPE" "KIAA1967 WILD-TYPE" "KIAA1967 WILD-TYPE" 
        TCGA-FB-A5VM         TCGA-FB-A78T         TCGA-FB-A7DR 
"KIAA1967 WILD-TYPE" "KIAA1967 WILD-TYPE" "KIAA1967 WILD-TYPE" 
        TCGA-FZ-5920         TCGA-FZ-5922         TCGA-FZ-5923 
"KIAA1967 WILD-TYPE" "KIAA1967 WILD-TYPE" "KIAA1967 WILD-TYPE" 
        TCGA-H6-8124         TCGA-H6-A45N         TCGA-H8-A6C1 
"KIAA1967 WILD-TYPE" "KIAA1967 WILD-TYPE" "KIAA1967 WILD-TYPE" 
        TCGA-HZ-7289         TCGA-HZ-7918         TCGA-HZ-7919 
"KIAA1967 WILD-TYPE" "KIAA1967 WILD-TYPE" "KIAA1967 WILD-TYPE" 
        TCGA-HZ-7922         TCGA-HZ-7923         TCGA-HZ-7924 
"KIAA1967 WILD-TYPE" "KIAA1967 WILD-TYPE" "KIAA1967 WILD-TYPE" 
        TCGA-HZ-7925         TCGA-HZ-7926         TCGA-HZ-8001 
"KIAA1967 WILD-TYPE" "KIAA1967 WILD-TYPE" "KIAA1967 WILD-TYPE" 
        TCGA-HZ-8002         TCGA-HZ-8003         TCGA-HZ-8005 
"KIAA1967 WILD-TYPE" "KIAA1967 WILD-TYPE"   "KIAA1967 MUTATED" 
        TCGA-HZ-8315         TCGA-HZ-8317         TCGA-HZ-8636 
"KIAA1967 WILD-TYPE" "KIAA1967 WILD-TYPE" "KIAA1967 WILD-TYPE" 
        TCGA-HZ-8638         TCGA-HZ-A49G         TCGA-HZ-A49H 
"KIAA1967 WILD-TYPE" "KIAA1967 WILD-TYPE" "KIAA1967 WILD-TYPE" 
        TCGA-HZ-A4BH         TCGA-HZ-A4BK         TCGA-IB-7644 
"KIAA1967 WILD-TYPE" "KIAA1967 WILD-TYPE" "KIAA1967 WILD-TYPE" 
        TCGA-IB-7645         TCGA-IB-7646         TCGA-IB-7647 
  "KIAA1967 MUTATED" "KIAA1967 WILD-TYPE" "KIAA1967 WILD-TYPE" 
        TCGA-IB-7649         TCGA-IB-7651         TCGA-IB-7652 
"KIAA1967 WILD-TYPE"   "KIAA1967 MUTATED" "KIAA1967 WILD-TYPE" 
        TCGA-IB-7885         TCGA-IB-7886         TCGA-IB-7887 
"KIAA1967 WILD-TYPE" "KIAA1967 WILD-TYPE" "KIAA1967 WILD-TYPE" 
        TCGA-IB-7888         TCGA-IB-7889         TCGA-IB-7890 
"KIAA1967 WILD-TYPE" "KIAA1967 WILD-TYPE" "KIAA1967 WILD-TYPE" 
        TCGA-IB-7891         TCGA-IB-7893         TCGA-IB-7897 
"KIAA1967 WILD-TYPE"   "KIAA1967 MUTATED" "KIAA1967 WILD-TYPE" 
        TCGA-IB-8126         TCGA-IB-8127         TCGA-IB-A5SO 
"KIAA1967 WILD-TYPE" "KIAA1967 WILD-TYPE" "KIAA1967 WILD-TYPE" 
        TCGA-IB-A5SP         TCGA-IB-A5SQ         TCGA-IB-A5SS 
"KIAA1967 WILD-TYPE" "KIAA1967 WILD-TYPE" "KIAA1967 WILD-TYPE" 
        TCGA-IB-A5ST         TCGA-IB-A6UG         TCGA-LB-A7SX 
"KIAA1967 WILD-TYPE" "KIAA1967 WILD-TYPE" "KIAA1967 WILD-TYPE" 
        TCGA-OE-A75W         TCGA-PZ-A5RE         TCGA-Q3-A5QY 
"KIAA1967 WILD-TYPE" "KIAA1967 WILD-TYPE" "KIAA1967 WILD-TYPE" 
        TCGA-US-A779         TCGA-US-A77E         TCGA-US-A77J 
"KIAA1967 WILD-TYPE" "KIAA1967 WILD-TYPE" "KIAA1967 WILD-TYPE" 
        TCGA-F2-6879         TCGA-F2-6880         TCGA-F2-7273 
"KIAA1967 WILD-TYPE" "KIAA1967 WILD-TYPE" "KIAA1967 WILD-TYPE" 
        TCGA-F2-7276         TCGA-F2-A44G         TCGA-F2-A44H 
"KIAA1967 WILD-TYPE" "KIAA1967 WILD-TYPE" "KIAA1967 WILD-TYPE" 
        TCGA-FB-A4P5         TCGA-FB-A4P6         TCGA-FB-A545 
"KIAA1967 WILD-TYPE" "KIAA1967 WILD-TYPE" "KIAA1967 WILD-TYPE" 
        TCGA-FB-A5VM         TCGA-FB-A78T         TCGA-FB-A7DR 
"KIAA1967 WILD-TYPE" "KIAA1967 WILD-TYPE" "KIAA1967 WILD-TYPE" 
        TCGA-FZ-5920         TCGA-FZ-5922         TCGA-FZ-5923 
"KIAA1967 WILD-TYPE" "KIAA1967 WILD-TYPE" "KIAA1967 WILD-TYPE" 
        TCGA-H6-8124         TCGA-H6-A45N         TCGA-H8-A6C1 
"KIAA1967 WILD-TYPE" "KIAA1967 WILD-TYPE" "KIAA1967 WILD-TYPE" 
        TCGA-HZ-7289         TCGA-HZ-7918         TCGA-HZ-7919 
"KIAA1967 WILD-TYPE" "KIAA1967 WILD-TYPE" "KIAA1967 WILD-TYPE" 
        TCGA-HZ-7922         TCGA-HZ-7923         TCGA-HZ-7924 
"KIAA1967 WILD-TYPE" "KIAA1967 WILD-TYPE" "KIAA1967 WILD-TYPE" 
        TCGA-HZ-7925         TCGA-HZ-7926         TCGA-HZ-8001 
"KIAA1967 WILD-TYPE" "KIAA1967 WILD-TYPE" "KIAA1967 WILD-TYPE" 
        TCGA-HZ-8002         TCGA-HZ-8003         TCGA-HZ-8005 
"KIAA1967 WILD-TYPE" "KIAA1967 WILD-TYPE"   "KIAA1967 MUTATED" 
        TCGA-HZ-8315         TCGA-HZ-8317         TCGA-HZ-8636 
"KIAA1967 WILD-TYPE" "KIAA1967 WILD-TYPE" "KIAA1967 WILD-TYPE" 
        TCGA-HZ-8638         TCGA-HZ-A49G         TCGA-HZ-A49H 
"KIAA1967 WILD-TYPE" "KIAA1967 WILD-TYPE" "KIAA1967 WILD-TYPE" 
        TCGA-HZ-A4BH         TCGA-HZ-A4BK         TCGA-IB-7644 
"KIAA1967 WILD-TYPE" "KIAA1967 WILD-TYPE" "KIAA1967 WILD-TYPE" 
        TCGA-IB-7645         TCGA-IB-7646         TCGA-IB-7647 
  "KIAA1967 MUTATED" "KIAA1967 WILD-TYPE" "KIAA1967 WILD-TYPE" 
        TCGA-IB-7649         TCGA-IB-7651         TCGA-IB-7652 
"KIAA1967 WILD-TYPE"   "KIAA1967 MUTATED" "KIAA1967 WILD-TYPE" 
        TCGA-IB-7885         TCGA-IB-7886         TCGA-IB-7887 
"KIAA1967 WILD-TYPE" "KIAA1967 WILD-TYPE" "KIAA1967 WILD-TYPE" 
        TCGA-IB-7888         TCGA-IB-7889         TCGA-IB-7890 
"KIAA1967 WILD-TYPE" "KIAA1967 WILD-TYPE" "KIAA1967 WILD-TYPE" 
        TCGA-IB-7891         TCGA-IB-7893         TCGA-IB-7897 
"KIAA1967 WILD-TYPE"   "KIAA1967 MUTATED" "KIAA1967 WILD-TYPE" 
        TCGA-IB-8126         TCGA-IB-8127         TCGA-IB-A5SO 
"KIAA1967 WILD-TYPE" "KIAA1967 WILD-TYPE" "KIAA1967 WILD-TYPE" 
        TCGA-IB-A5SP         TCGA-IB-A5SQ         TCGA-IB-A5SS 
"KIAA1967 WILD-TYPE" "KIAA1967 WILD-TYPE" "KIAA1967 WILD-TYPE" 
        TCGA-IB-A5ST         TCGA-IB-A6UG         TCGA-LB-A7SX 
"KIAA1967 WILD-TYPE" "KIAA1967 WILD-TYPE" "KIAA1967 WILD-TYPE" 
        TCGA-OE-A75W         TCGA-PZ-A5RE         TCGA-Q3-A5QY 
"KIAA1967 WILD-TYPE" "KIAA1967 WILD-TYPE" "KIAA1967 WILD-TYPE" 
        TCGA-US-A779         TCGA-US-A77E         TCGA-US-A77J 
"KIAA1967 WILD-TYPE" "KIAA1967 WILD-TYPE" "KIAA1967 WILD-TYPE" 
        TCGA-F2-6879         TCGA-F2-6880         TCGA-F2-7273 
"KIAA1967 WILD-TYPE" "KIAA1967 WILD-TYPE" "KIAA1967 WILD-TYPE" 
        TCGA-F2-7276         TCGA-F2-A44G         TCGA-F2-A44H 
"KIAA1967 WILD-TYPE" "KIAA1967 WILD-TYPE" "KIAA1967 WILD-TYPE" 
        TCGA-FB-A4P5         TCGA-FB-A4P6         TCGA-FB-A545 
"KIAA1967 WILD-TYPE" "KIAA1967 WILD-TYPE" "KIAA1967 WILD-TYPE" 
        TCGA-FB-A5VM         TCGA-FB-A78T         TCGA-FB-A7DR 
"KIAA1967 WILD-TYPE" "KIAA1967 WILD-TYPE" "KIAA1967 WILD-TYPE" 
        TCGA-FZ-5920         TCGA-FZ-5922         TCGA-FZ-5923 
"KIAA1967 WILD-TYPE" "KIAA1967 WILD-TYPE" "KIAA1967 WILD-TYPE" 
        TCGA-H6-8124         TCGA-H6-A45N         TCGA-H8-A6C1 
"KIAA1967 WILD-TYPE" "KIAA1967 WILD-TYPE" "KIAA1967 WILD-TYPE" 
        TCGA-HZ-7289         TCGA-HZ-7918         TCGA-HZ-7919 
"KIAA1967 WILD-TYPE" "KIAA1967 WILD-TYPE" "KIAA1967 WILD-TYPE" 
        TCGA-HZ-7922         TCGA-HZ-7923         TCGA-HZ-7924 
"KIAA1967 WILD-TYPE" "KIAA1967 WILD-TYPE" "KIAA1967 WILD-TYPE" 
        TCGA-HZ-7925         TCGA-HZ-7926         TCGA-HZ-8001 
"KIAA1967 WILD-TYPE" "KIAA1967 WILD-TYPE" "KIAA1967 WILD-TYPE" 
        TCGA-HZ-8002         TCGA-HZ-8003         TCGA-HZ-8005 
"KIAA1967 WILD-TYPE" "KIAA1967 WILD-TYPE"   "KIAA1967 MUTATED" 
        TCGA-HZ-8315         TCGA-HZ-8317         TCGA-HZ-8636 
"KIAA1967 WILD-TYPE" "KIAA1967 WILD-TYPE" "KIAA1967 WILD-TYPE" 
        TCGA-HZ-8638         TCGA-HZ-A49G         TCGA-HZ-A49H 
"KIAA1967 WILD-TYPE" "KIAA1967 WILD-TYPE" "KIAA1967 WILD-TYPE" 
        TCGA-HZ-A4BH         TCGA-HZ-A4BK         TCGA-IB-7644 
"KIAA1967 WILD-TYPE" "KIAA1967 WILD-TYPE" "KIAA1967 WILD-TYPE" 
        TCGA-IB-7645         TCGA-IB-7646         TCGA-IB-7647 
  "KIAA1967 MUTATED" "KIAA1967 WILD-TYPE" "KIAA1967 WILD-TYPE" 
        TCGA-IB-7649         TCGA-IB-7651         TCGA-IB-7652 
"KIAA1967 WILD-TYPE"   "KIAA1967 MUTATED" "KIAA1967 WILD-TYPE" 
        TCGA-IB-7885         TCGA-IB-7886         TCGA-IB-7887 
"KIAA1967 WILD-TYPE" "KIAA1967 WILD-TYPE" "KIAA1967 WILD-TYPE" 
        TCGA-IB-7888         TCGA-IB-7889         TCGA-IB-7890 
"KIAA1967 WILD-TYPE" "KIAA1967 WILD-TYPE" "KIAA1967 WILD-TYPE" 
        TCGA-IB-7891         TCGA-IB-7893         TCGA-IB-7897 
"KIAA1967 WILD-TYPE"   "KIAA1967 MUTATED" "KIAA1967 WILD-TYPE" 
        TCGA-IB-8126         TCGA-IB-8127         TCGA-IB-A5SO 
"KIAA1967 WILD-TYPE" "KIAA1967 WILD-TYPE" "KIAA1967 WILD-TYPE" 
        TCGA-IB-A5SP         TCGA-IB-A5SQ         TCGA-IB-A5SS 
"KIAA1967 WILD-TYPE" "KIAA1967 WILD-TYPE" "KIAA1967 WILD-TYPE" 
        TCGA-IB-A5ST         TCGA-IB-A6UG         TCGA-LB-A7SX 
"KIAA1967 WILD-TYPE" "KIAA1967 WILD-TYPE" "KIAA1967 WILD-TYPE" 
        TCGA-OE-A75W         TCGA-PZ-A5RE         TCGA-Q3-A5QY 
"KIAA1967 WILD-TYPE" "KIAA1967 WILD-TYPE" "KIAA1967 WILD-TYPE" 
        TCGA-US-A779         TCGA-US-A77E         TCGA-US-A77J 
"KIAA1967 WILD-TYPE" "KIAA1967 WILD-TYPE" "KIAA1967 WILD-TYPE" 
[1] "hr=" "1.3"
D446V2, continuous
                    vv
clus                 STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  KIAA1967 MUTATED          0        0         1         3         0        0
  KIAA1967 WILD-TYPE        1        4        10        48         2        3
D446V3, multiclass
                    vv
clus                 T1+T2 T3+T4
  KIAA1967 MUTATED       0     4
  KIAA1967 WILD-TYPE     6    62
D446V4, multiclass
       clus
vv      KIAA1967 MUTATED KIAA1967 WILD-TYPE
  T1+T2                0                  6
  T3+T4                4                 62
D446V5, binary
                    cls
clus                  0  1
  KIAA1967 MUTATED    1  3
  KIAA1967 WILD-TYPE 16 51
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  KIAA1967 MUTATED      1    3
  KIAA1967 WILD-TYPE   16   51
   clus
vv  KIAA1967 MUTATED KIAA1967 WILD-TYPE
  0                1                 16
  1                3                 51
                    vv
clus                 M0 M1 MX
  KIAA1967 MUTATED    3  0  1
  KIAA1967 WILD-TYPE 36  3 29
D446V6, multiclass
    clus
vv   KIAA1967 MUTATED KIAA1967 WILD-TYPE
  M0                3                 36
  M1                0                  3
  MX                1                 29
D446V7, binary
                    cls
clus                  0  1
  KIAA1967 MUTATED    2  2
  KIAA1967 WILD-TYPE 34 34
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  KIAA1967 MUTATED      2    2
  KIAA1967 WILD-TYPE   34   34
        clus
vv       KIAA1967 MUTATED KIAA1967 WILD-TYPE
  FEMALE                2                 34
  MALE                  2                 34
                    vv
clus                 PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  KIAA1967 MUTATED                                     4
  KIAA1967 WILD-TYPE                                  61
                    vv
clus                 PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  KIAA1967 MUTATED                                       0
  KIAA1967 WILD-TYPE                                     4
                    vv
clus                 PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  KIAA1967 MUTATED                                                  0
  KIAA1967 WILD-TYPE                                                2
D446V8, multiclass
                                                  clus
vv                                                 KIAA1967 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                             4
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                           0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                0
                                                  clus
vv                                                 KIAA1967 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                              61
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                             4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                  2
D446V9, continuous
[1] "Remove cluster labels:" "KIAA1967 MUTATED"      
clus
  KIAA1967 MUTATED KIAA1967 WILD-TYPE 
                 1                 21 
        TCGA-F2-6880         TCGA-FB-A4P5         TCGA-FB-A4P6 
"KIAA1967 WILD-TYPE" "KIAA1967 WILD-TYPE" "KIAA1967 WILD-TYPE" 
        TCGA-FB-A5VM         TCGA-FB-A78T         TCGA-FB-A7DR 
"KIAA1967 WILD-TYPE" "KIAA1967 WILD-TYPE" "KIAA1967 WILD-TYPE" 
        TCGA-H6-8124         TCGA-H6-A45N         TCGA-H8-A6C1 
"KIAA1967 WILD-TYPE" "KIAA1967 WILD-TYPE" "KIAA1967 WILD-TYPE" 
        TCGA-IB-7644         TCGA-IB-7649         TCGA-IB-7885 
"KIAA1967 WILD-TYPE" "KIAA1967 WILD-TYPE" "KIAA1967 WILD-TYPE" 
        TCGA-IB-7886         TCGA-IB-7887         TCGA-IB-7891 
"KIAA1967 WILD-TYPE" "KIAA1967 WILD-TYPE" "KIAA1967 WILD-TYPE" 
        TCGA-IB-8126         TCGA-IB-8127         TCGA-IB-A5SS 
"KIAA1967 WILD-TYPE" "KIAA1967 WILD-TYPE" "KIAA1967 WILD-TYPE" 
        TCGA-IB-A6UG         TCGA-LB-A7SX         TCGA-OE-A75W 
"KIAA1967 WILD-TYPE" "KIAA1967 WILD-TYPE" "KIAA1967 WILD-TYPE" 
D446V10, continuous
[1] "Remove cluster labels:" "KIAA1967 MUTATED"      
clus
  KIAA1967 MUTATED KIAA1967 WILD-TYPE 
                 1                 18 
        TCGA-FB-A4P5         TCGA-FB-A4P6         TCGA-FB-A5VM 
"KIAA1967 WILD-TYPE" "KIAA1967 WILD-TYPE" "KIAA1967 WILD-TYPE" 
        TCGA-FB-A78T         TCGA-FB-A7DR         TCGA-H6-8124 
"KIAA1967 WILD-TYPE" "KIAA1967 WILD-TYPE" "KIAA1967 WILD-TYPE" 
        TCGA-H8-A6C1         TCGA-IB-7644         TCGA-IB-7649 
"KIAA1967 WILD-TYPE" "KIAA1967 WILD-TYPE" "KIAA1967 WILD-TYPE" 
        TCGA-IB-7885         TCGA-IB-7886         TCGA-IB-7891 
"KIAA1967 WILD-TYPE" "KIAA1967 WILD-TYPE" "KIAA1967 WILD-TYPE" 
        TCGA-IB-8126         TCGA-IB-8127         TCGA-IB-A5SS 
"KIAA1967 WILD-TYPE" "KIAA1967 WILD-TYPE" "KIAA1967 WILD-TYPE" 
        TCGA-IB-A6UG         TCGA-LB-A7SX         TCGA-OE-A75W 
"KIAA1967 WILD-TYPE" "KIAA1967 WILD-TYPE" "KIAA1967 WILD-TYPE" 
                    vv
clus                 R0 R1 RX
  KIAA1967 MUTATED    3  1  0
  KIAA1967 WILD-TYPE 39 23  2
D446V11, multiclass
    clus
vv   KIAA1967 MUTATED KIAA1967 WILD-TYPE
  R0                3                 39
  R1                1                 23
  RX                0                  2
D446V12, continuous

Clustering(447) Variable = UTY MUTATION ANALYSIS
D447V1, survival
               sevent
clus2            0  1
  UTY MUTATED    1  1
  UTY WILD-TYPE 39 28
  UTY MUTATED UTY WILD-TYPE 
            2            67 
  UTY MUTATED UTY WILD-TYPE 
            1            28 
$`UTY MUTATED`
TCGA-HZ-A4BH TCGA-IB-7646 
        6.38         4.77 

$`UTY WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P5 TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR 
        0.13        11.93        12.66         2.47         0.03         5.46 
TCGA-FZ-5920 TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 
        2.01        36.20        20.81        12.89         7.66        13.02 
TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 
        7.89         0.92         0.66         0.13         0.26        12.13 
TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 
       11.87         0.26         0.62         0.79         0.69         3.95 
TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H 
        0.92         0.53         0.16         2.99         0.76         0.95 
TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7651 
        1.51        11.41        49.38        21.90        15.35        19.82 
TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 
       15.65        27.98         4.04         3.62        43.79        15.81 
TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-8127 
       19.66        16.04         3.85        15.98         0.56        17.16 
TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG 
       10.82         9.86         7.20        15.12         0.26         1.35 
TCGA-LB-A7SX TCGA-OE-A75W TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E 
        4.18         3.62         8.12        13.68        16.80        14.14 
TCGA-US-A77J 
       18.67 

  UTY MUTATED UTY WILD-TYPE 
         4.77          0.03 
  UTY MUTATED UTY WILD-TYPE 
         6.38         49.38 
  UTY MUTATED UTY WILD-TYPE 
        5.575         7.890 
[1] "4.8 - 6.4 (5.6)"  "0.0 - 49.4 (7.9)"
   TCGA-F2-6879    TCGA-F2-6880    TCGA-F2-7273    TCGA-F2-7276    TCGA-F2-A44G 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-F2-A44H    TCGA-FB-A4P5    TCGA-FB-A4P6    TCGA-FB-A545    TCGA-FB-A5VM 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-FB-A78T    TCGA-FB-A7DR    TCGA-FZ-5920    TCGA-FZ-5922    TCGA-FZ-5923 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-H6-8124    TCGA-H6-A45N    TCGA-H8-A6C1    TCGA-HZ-7289    TCGA-HZ-7918 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-HZ-7919    TCGA-HZ-7922    TCGA-HZ-7923    TCGA-HZ-7924    TCGA-HZ-7925 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-HZ-7926    TCGA-HZ-8001    TCGA-HZ-8002    TCGA-HZ-8003    TCGA-HZ-8005 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-HZ-8315    TCGA-HZ-8317    TCGA-HZ-8636    TCGA-HZ-8638    TCGA-HZ-A49G 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-HZ-A49H    TCGA-HZ-A4BH    TCGA-HZ-A4BK    TCGA-IB-7644    TCGA-IB-7645 
"UTY WILD-TYPE"   "UTY MUTATED" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-IB-7646    TCGA-IB-7647    TCGA-IB-7649    TCGA-IB-7651    TCGA-IB-7652 
  "UTY MUTATED" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-IB-7885    TCGA-IB-7886    TCGA-IB-7887    TCGA-IB-7888    TCGA-IB-7889 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-IB-7890    TCGA-IB-7891    TCGA-IB-7893    TCGA-IB-7897    TCGA-IB-8126 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-IB-8127    TCGA-IB-A5SO    TCGA-IB-A5SP    TCGA-IB-A5SQ    TCGA-IB-A5SS 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-IB-A5ST    TCGA-IB-A6UG    TCGA-LB-A7SX    TCGA-OE-A75W    TCGA-PZ-A5RE 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-Q3-A5QY    TCGA-US-A779    TCGA-US-A77E    TCGA-US-A77J 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-F2-6879    TCGA-F2-6880    TCGA-F2-7273    TCGA-F2-7276    TCGA-F2-A44G 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-F2-A44H    TCGA-FB-A4P5    TCGA-FB-A4P6    TCGA-FB-A545    TCGA-FB-A5VM 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-FB-A78T    TCGA-FB-A7DR    TCGA-FZ-5920    TCGA-FZ-5922    TCGA-FZ-5923 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-H6-8124    TCGA-H6-A45N    TCGA-H8-A6C1    TCGA-HZ-7289    TCGA-HZ-7918 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-HZ-7919    TCGA-HZ-7922    TCGA-HZ-7923    TCGA-HZ-7924    TCGA-HZ-7925 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-HZ-7926    TCGA-HZ-8001    TCGA-HZ-8002    TCGA-HZ-8003    TCGA-HZ-8005 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-HZ-8315    TCGA-HZ-8317    TCGA-HZ-8636    TCGA-HZ-8638    TCGA-HZ-A49G 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-HZ-A49H    TCGA-HZ-A4BH    TCGA-HZ-A4BK    TCGA-IB-7644    TCGA-IB-7645 
"UTY WILD-TYPE"   "UTY MUTATED" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-IB-7646    TCGA-IB-7647    TCGA-IB-7649    TCGA-IB-7651    TCGA-IB-7652 
  "UTY MUTATED" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-IB-7885    TCGA-IB-7886    TCGA-IB-7887    TCGA-IB-7888    TCGA-IB-7889 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-IB-7890    TCGA-IB-7891    TCGA-IB-7893    TCGA-IB-7897    TCGA-IB-8126 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-IB-8127    TCGA-IB-A5SO    TCGA-IB-A5SP    TCGA-IB-A5SQ    TCGA-IB-A5SS 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-IB-A5ST    TCGA-IB-A6UG    TCGA-LB-A7SX    TCGA-OE-A75W    TCGA-PZ-A5RE 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-Q3-A5QY    TCGA-US-A779    TCGA-US-A77E    TCGA-US-A77J 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-F2-6879    TCGA-F2-6880    TCGA-F2-7273    TCGA-F2-7276    TCGA-F2-A44G 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-F2-A44H    TCGA-FB-A4P5    TCGA-FB-A4P6    TCGA-FB-A545    TCGA-FB-A5VM 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-FB-A78T    TCGA-FB-A7DR    TCGA-FZ-5920    TCGA-FZ-5922    TCGA-FZ-5923 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-H6-8124    TCGA-H6-A45N    TCGA-H8-A6C1    TCGA-HZ-7289    TCGA-HZ-7918 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-HZ-7919    TCGA-HZ-7922    TCGA-HZ-7923    TCGA-HZ-7924    TCGA-HZ-7925 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-HZ-7926    TCGA-HZ-8001    TCGA-HZ-8002    TCGA-HZ-8003    TCGA-HZ-8005 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-HZ-8315    TCGA-HZ-8317    TCGA-HZ-8636    TCGA-HZ-8638    TCGA-HZ-A49G 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-HZ-A49H    TCGA-HZ-A4BH    TCGA-HZ-A4BK    TCGA-IB-7644    TCGA-IB-7645 
"UTY WILD-TYPE"   "UTY MUTATED" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-IB-7646    TCGA-IB-7647    TCGA-IB-7649    TCGA-IB-7651    TCGA-IB-7652 
  "UTY MUTATED" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-IB-7885    TCGA-IB-7886    TCGA-IB-7887    TCGA-IB-7888    TCGA-IB-7889 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-IB-7890    TCGA-IB-7891    TCGA-IB-7893    TCGA-IB-7897    TCGA-IB-8126 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-IB-8127    TCGA-IB-A5SO    TCGA-IB-A5SP    TCGA-IB-A5SQ    TCGA-IB-A5SS 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-IB-A5ST    TCGA-IB-A6UG    TCGA-LB-A7SX    TCGA-OE-A75W    TCGA-PZ-A5RE 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-Q3-A5QY    TCGA-US-A779    TCGA-US-A77E    TCGA-US-A77J 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
[1] "Remove cluster labels:" "UTY MUTATED"           
clus
  UTY MUTATED UTY WILD-TYPE 
            2            67 
   TCGA-F2-6879    TCGA-F2-6880    TCGA-F2-7273    TCGA-F2-7276    TCGA-F2-A44G 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-F2-A44H    TCGA-FB-A4P5    TCGA-FB-A4P6    TCGA-FB-A545    TCGA-FB-A5VM 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-FB-A78T    TCGA-FB-A7DR    TCGA-FZ-5920    TCGA-FZ-5922    TCGA-FZ-5923 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-H6-8124    TCGA-H6-A45N    TCGA-H8-A6C1    TCGA-HZ-7289    TCGA-HZ-7918 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-HZ-7919    TCGA-HZ-7922    TCGA-HZ-7923    TCGA-HZ-7924    TCGA-HZ-7925 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-HZ-7926    TCGA-HZ-8001    TCGA-HZ-8002    TCGA-HZ-8003    TCGA-HZ-8005 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-HZ-8315    TCGA-HZ-8317    TCGA-HZ-8636    TCGA-HZ-8638    TCGA-HZ-A49G 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-HZ-A49H    TCGA-HZ-A4BK    TCGA-IB-7644    TCGA-IB-7645    TCGA-IB-7647 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-IB-7649    TCGA-IB-7651    TCGA-IB-7652    TCGA-IB-7885    TCGA-IB-7886 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-IB-7887    TCGA-IB-7888    TCGA-IB-7889    TCGA-IB-7890    TCGA-IB-7891 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-IB-7893    TCGA-IB-7897    TCGA-IB-8126    TCGA-IB-8127    TCGA-IB-A5SO 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-IB-A5SP    TCGA-IB-A5SQ    TCGA-IB-A5SS    TCGA-IB-A5ST    TCGA-IB-A6UG 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-LB-A7SX    TCGA-OE-A75W    TCGA-PZ-A5RE    TCGA-Q3-A5QY    TCGA-US-A779 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-US-A77E    TCGA-US-A77J 
"UTY WILD-TYPE" "UTY WILD-TYPE" 
D447V2, continuous
               vv
clus            STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  UTY MUTATED          0        1         0         2         0        0
  UTY WILD-TYPE        1        3        11        49         2        3
D447V3, multiclass
               vv
clus            T1+T2 T3+T4
  UTY MUTATED       1     2
  UTY WILD-TYPE     5    64
D447V4, multiclass
       clus
vv      UTY MUTATED UTY WILD-TYPE
  T1+T2           1             5
  T3+T4           2            64
D447V5, binary
               cls
clus             0  1
  UTY MUTATED    1  2
  UTY WILD-TYPE 16 52
[1] "tbl2"
               cls
clus            [,1] [,2]
  UTY MUTATED      1    2
  UTY WILD-TYPE   16   52
   clus
vv  UTY MUTATED UTY WILD-TYPE
  0           1            16
  1           2            52
               vv
clus            M0 M1 MX
  UTY MUTATED    1  0  2
  UTY WILD-TYPE 38  3 28
D447V6, multiclass
    clus
vv   UTY MUTATED UTY WILD-TYPE
  M0           1            38
  M1           0             3
  MX           2            28
D447V7, binary
               cls
clus             0  1
  UTY MUTATED    0  3
  UTY WILD-TYPE 36 33
[1] "tbl2"
               cls
clus            [,1] [,2]
  UTY MUTATED      0    3
  UTY WILD-TYPE   36   33
        clus
vv       UTY MUTATED UTY WILD-TYPE
  FEMALE           0            36
  MALE             3            33
               vv
clus            PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  UTY MUTATED                                     3
  UTY WILD-TYPE                                  62
               vv
clus            PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  UTY MUTATED                                       0
  UTY WILD-TYPE                                     4
               vv
clus            PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  UTY MUTATED                                                  0
  UTY WILD-TYPE                                                2
D447V8, multiclass
                                                  clus
vv                                                 UTY MUTATED UTY WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                        3            62
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                      0             4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA           0             2
D447V9, continuous
D447V10, continuous
               vv
clus            R0 R1 RX
  UTY MUTATED    1  2  0
  UTY WILD-TYPE 41 22  2
D447V11, multiclass
    clus
vv   UTY MUTATED UTY WILD-TYPE
  R0           1            41
  R1           2            22
  RX           0             2
D447V12, continuous

Clustering(448) Variable = REC8 MUTATION ANALYSIS
D448V1, survival
                sevent
clus2             0  1
  REC8 MUTATED    2  1
  REC8 WILD-TYPE 38 28
  REC8 MUTATED REC8 WILD-TYPE 
             3             66 
  REC8 MUTATED REC8 WILD-TYPE 
             1             28 
$`REC8 MUTATED`
TCGA-HZ-8002 TCGA-HZ-8003 TCGA-IB-7651 
        0.79         0.69        19.82 

$`REC8 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P5 TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR 
        0.13        11.93        12.66         2.47         0.03         5.46 
TCGA-FZ-5920 TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 
        2.01        36.20        20.81        12.89         7.66        13.02 
TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 
        7.89         0.92         0.66         0.13         0.26        12.13 
TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 
       11.87         0.26         0.62         3.95         0.92         0.53 
TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK 
        0.16         2.99         0.76         0.95         6.38         1.51 
TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7652 
       11.41        49.38         4.77        21.90        15.35        15.65 
TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 
       27.98         4.04         3.62        43.79        15.81        19.66 
TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO 
       16.04         3.85        15.98         0.56        17.16        10.82 
TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX 
        9.86         7.20        15.12         0.26         1.35         4.18 
TCGA-OE-A75W TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
        3.62         8.12        13.68        16.80        14.14        18.67 

  REC8 MUTATED REC8 WILD-TYPE 
          0.69           0.03 
  REC8 MUTATED REC8 WILD-TYPE 
         19.82          49.38 
  REC8 MUTATED REC8 WILD-TYPE 
         0.790          7.775 
[1] "0.7 - 19.8 (0.8)" "0.0 - 49.4 (7.8)"
    TCGA-F2-6879     TCGA-F2-6880     TCGA-F2-7273     TCGA-F2-7276 
"REC8 WILD-TYPE" "REC8 WILD-TYPE" "REC8 WILD-TYPE" "REC8 WILD-TYPE" 
    TCGA-F2-A44G     TCGA-F2-A44H     TCGA-FB-A4P5     TCGA-FB-A4P6 
"REC8 WILD-TYPE" "REC8 WILD-TYPE" "REC8 WILD-TYPE" "REC8 WILD-TYPE" 
    TCGA-FB-A545     TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-FB-A7DR 
"REC8 WILD-TYPE" "REC8 WILD-TYPE" "REC8 WILD-TYPE" "REC8 WILD-TYPE" 
    TCGA-FZ-5920     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-H6-8124 
"REC8 WILD-TYPE" "REC8 WILD-TYPE" "REC8 WILD-TYPE" "REC8 WILD-TYPE" 
    TCGA-H6-A45N     TCGA-H8-A6C1     TCGA-HZ-7289     TCGA-HZ-7918 
"REC8 WILD-TYPE" "REC8 WILD-TYPE" "REC8 WILD-TYPE" "REC8 WILD-TYPE" 
    TCGA-HZ-7919     TCGA-HZ-7922     TCGA-HZ-7923     TCGA-HZ-7924 
"REC8 WILD-TYPE" "REC8 WILD-TYPE" "REC8 WILD-TYPE" "REC8 WILD-TYPE" 
    TCGA-HZ-7925     TCGA-HZ-7926     TCGA-HZ-8001     TCGA-HZ-8002 
"REC8 WILD-TYPE" "REC8 WILD-TYPE" "REC8 WILD-TYPE"   "REC8 MUTATED" 
    TCGA-HZ-8003     TCGA-HZ-8005     TCGA-HZ-8315     TCGA-HZ-8317 
  "REC8 MUTATED" "REC8 WILD-TYPE" "REC8 WILD-TYPE" "REC8 WILD-TYPE" 
    TCGA-HZ-8636     TCGA-HZ-8638     TCGA-HZ-A49G     TCGA-HZ-A49H 
"REC8 WILD-TYPE" "REC8 WILD-TYPE" "REC8 WILD-TYPE" "REC8 WILD-TYPE" 
    TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-IB-7644     TCGA-IB-7645 
"REC8 WILD-TYPE" "REC8 WILD-TYPE" "REC8 WILD-TYPE" "REC8 WILD-TYPE" 
    TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7651 
"REC8 WILD-TYPE" "REC8 WILD-TYPE" "REC8 WILD-TYPE"   "REC8 MUTATED" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887 
"REC8 WILD-TYPE" "REC8 WILD-TYPE" "REC8 WILD-TYPE" "REC8 WILD-TYPE" 
    TCGA-IB-7888     TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891 
"REC8 WILD-TYPE" "REC8 WILD-TYPE" "REC8 WILD-TYPE" "REC8 WILD-TYPE" 
    TCGA-IB-7893     TCGA-IB-7897     TCGA-IB-8126     TCGA-IB-8127 
"REC8 WILD-TYPE" "REC8 WILD-TYPE" "REC8 WILD-TYPE" "REC8 WILD-TYPE" 
    TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS 
"REC8 WILD-TYPE" "REC8 WILD-TYPE" "REC8 WILD-TYPE" "REC8 WILD-TYPE" 
    TCGA-IB-A5ST     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
"REC8 WILD-TYPE" "REC8 WILD-TYPE" "REC8 WILD-TYPE" "REC8 WILD-TYPE" 
    TCGA-PZ-A5RE     TCGA-Q3-A5QY     TCGA-US-A779     TCGA-US-A77E 
"REC8 WILD-TYPE" "REC8 WILD-TYPE" "REC8 WILD-TYPE" "REC8 WILD-TYPE" 
    TCGA-US-A77J 
"REC8 WILD-TYPE" 
    TCGA-F2-6879     TCGA-F2-6880     TCGA-F2-7273     TCGA-F2-7276 
"REC8 WILD-TYPE" "REC8 WILD-TYPE" "REC8 WILD-TYPE" "REC8 WILD-TYPE" 
    TCGA-F2-A44G     TCGA-F2-A44H     TCGA-FB-A4P5     TCGA-FB-A4P6 
"REC8 WILD-TYPE" "REC8 WILD-TYPE" "REC8 WILD-TYPE" "REC8 WILD-TYPE" 
    TCGA-FB-A545     TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-FB-A7DR 
"REC8 WILD-TYPE" "REC8 WILD-TYPE" "REC8 WILD-TYPE" "REC8 WILD-TYPE" 
    TCGA-FZ-5920     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-H6-8124 
"REC8 WILD-TYPE" "REC8 WILD-TYPE" "REC8 WILD-TYPE" "REC8 WILD-TYPE" 
    TCGA-H6-A45N     TCGA-H8-A6C1     TCGA-HZ-7289     TCGA-HZ-7918 
"REC8 WILD-TYPE" "REC8 WILD-TYPE" "REC8 WILD-TYPE" "REC8 WILD-TYPE" 
    TCGA-HZ-7919     TCGA-HZ-7922     TCGA-HZ-7923     TCGA-HZ-7924 
"REC8 WILD-TYPE" "REC8 WILD-TYPE" "REC8 WILD-TYPE" "REC8 WILD-TYPE" 
    TCGA-HZ-7925     TCGA-HZ-7926     TCGA-HZ-8001     TCGA-HZ-8002 
"REC8 WILD-TYPE" "REC8 WILD-TYPE" "REC8 WILD-TYPE"   "REC8 MUTATED" 
    TCGA-HZ-8003     TCGA-HZ-8005     TCGA-HZ-8315     TCGA-HZ-8317 
  "REC8 MUTATED" "REC8 WILD-TYPE" "REC8 WILD-TYPE" "REC8 WILD-TYPE" 
    TCGA-HZ-8636     TCGA-HZ-8638     TCGA-HZ-A49G     TCGA-HZ-A49H 
"REC8 WILD-TYPE" "REC8 WILD-TYPE" "REC8 WILD-TYPE" "REC8 WILD-TYPE" 
    TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-IB-7644     TCGA-IB-7645 
"REC8 WILD-TYPE" "REC8 WILD-TYPE" "REC8 WILD-TYPE" "REC8 WILD-TYPE" 
    TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7651 
"REC8 WILD-TYPE" "REC8 WILD-TYPE" "REC8 WILD-TYPE"   "REC8 MUTATED" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887 
"REC8 WILD-TYPE" "REC8 WILD-TYPE" "REC8 WILD-TYPE" "REC8 WILD-TYPE" 
    TCGA-IB-7888     TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891 
"REC8 WILD-TYPE" "REC8 WILD-TYPE" "REC8 WILD-TYPE" "REC8 WILD-TYPE" 
    TCGA-IB-7893     TCGA-IB-7897     TCGA-IB-8126     TCGA-IB-8127 
"REC8 WILD-TYPE" "REC8 WILD-TYPE" "REC8 WILD-TYPE" "REC8 WILD-TYPE" 
    TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS 
"REC8 WILD-TYPE" "REC8 WILD-TYPE" "REC8 WILD-TYPE" "REC8 WILD-TYPE" 
    TCGA-IB-A5ST     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
"REC8 WILD-TYPE" "REC8 WILD-TYPE" "REC8 WILD-TYPE" "REC8 WILD-TYPE" 
    TCGA-PZ-A5RE     TCGA-Q3-A5QY     TCGA-US-A779     TCGA-US-A77E 
"REC8 WILD-TYPE" "REC8 WILD-TYPE" "REC8 WILD-TYPE" "REC8 WILD-TYPE" 
    TCGA-US-A77J 
"REC8 WILD-TYPE" 
    TCGA-F2-6879     TCGA-F2-6880     TCGA-F2-7273     TCGA-F2-7276 
"REC8 WILD-TYPE" "REC8 WILD-TYPE" "REC8 WILD-TYPE" "REC8 WILD-TYPE" 
    TCGA-F2-A44G     TCGA-F2-A44H     TCGA-FB-A4P5     TCGA-FB-A4P6 
"REC8 WILD-TYPE" "REC8 WILD-TYPE" "REC8 WILD-TYPE" "REC8 WILD-TYPE" 
    TCGA-FB-A545     TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-FB-A7DR 
"REC8 WILD-TYPE" "REC8 WILD-TYPE" "REC8 WILD-TYPE" "REC8 WILD-TYPE" 
    TCGA-FZ-5920     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-H6-8124 
"REC8 WILD-TYPE" "REC8 WILD-TYPE" "REC8 WILD-TYPE" "REC8 WILD-TYPE" 
    TCGA-H6-A45N     TCGA-H8-A6C1     TCGA-HZ-7289     TCGA-HZ-7918 
"REC8 WILD-TYPE" "REC8 WILD-TYPE" "REC8 WILD-TYPE" "REC8 WILD-TYPE" 
    TCGA-HZ-7919     TCGA-HZ-7922     TCGA-HZ-7923     TCGA-HZ-7924 
"REC8 WILD-TYPE" "REC8 WILD-TYPE" "REC8 WILD-TYPE" "REC8 WILD-TYPE" 
    TCGA-HZ-7925     TCGA-HZ-7926     TCGA-HZ-8001     TCGA-HZ-8002 
"REC8 WILD-TYPE" "REC8 WILD-TYPE" "REC8 WILD-TYPE"   "REC8 MUTATED" 
    TCGA-HZ-8003     TCGA-HZ-8005     TCGA-HZ-8315     TCGA-HZ-8317 
  "REC8 MUTATED" "REC8 WILD-TYPE" "REC8 WILD-TYPE" "REC8 WILD-TYPE" 
    TCGA-HZ-8636     TCGA-HZ-8638     TCGA-HZ-A49G     TCGA-HZ-A49H 
"REC8 WILD-TYPE" "REC8 WILD-TYPE" "REC8 WILD-TYPE" "REC8 WILD-TYPE" 
    TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-IB-7644     TCGA-IB-7645 
"REC8 WILD-TYPE" "REC8 WILD-TYPE" "REC8 WILD-TYPE" "REC8 WILD-TYPE" 
    TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7651 
"REC8 WILD-TYPE" "REC8 WILD-TYPE" "REC8 WILD-TYPE"   "REC8 MUTATED" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887 
"REC8 WILD-TYPE" "REC8 WILD-TYPE" "REC8 WILD-TYPE" "REC8 WILD-TYPE" 
    TCGA-IB-7888     TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891 
"REC8 WILD-TYPE" "REC8 WILD-TYPE" "REC8 WILD-TYPE" "REC8 WILD-TYPE" 
    TCGA-IB-7893     TCGA-IB-7897     TCGA-IB-8126     TCGA-IB-8127 
"REC8 WILD-TYPE" "REC8 WILD-TYPE" "REC8 WILD-TYPE" "REC8 WILD-TYPE" 
    TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS 
"REC8 WILD-TYPE" "REC8 WILD-TYPE" "REC8 WILD-TYPE" "REC8 WILD-TYPE" 
    TCGA-IB-A5ST     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
"REC8 WILD-TYPE" "REC8 WILD-TYPE" "REC8 WILD-TYPE" "REC8 WILD-TYPE" 
    TCGA-PZ-A5RE     TCGA-Q3-A5QY     TCGA-US-A779     TCGA-US-A77E 
"REC8 WILD-TYPE" "REC8 WILD-TYPE" "REC8 WILD-TYPE" "REC8 WILD-TYPE" 
    TCGA-US-A77J 
"REC8 WILD-TYPE" 
[1] "hr=" "1.2"
D448V2, continuous
                vv
clus             STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  REC8 MUTATED          0        0         0         4         0        0
  REC8 WILD-TYPE        1        4        11        47         2        3
D448V3, multiclass
                vv
clus             T1+T2 T3+T4
  REC8 MUTATED       0     4
  REC8 WILD-TYPE     6    62
D448V4, multiclass
       clus
vv      REC8 MUTATED REC8 WILD-TYPE
  T1+T2            0              6
  T3+T4            4             62
D448V5, binary
                cls
clus              0  1
  REC8 MUTATED    0  4
  REC8 WILD-TYPE 17 50
[1] "tbl2"
                cls
clus             [,1] [,2]
  REC8 MUTATED      0    4
  REC8 WILD-TYPE   17   50
   clus
vv  REC8 MUTATED REC8 WILD-TYPE
  0            0             17
  1            4             50
                vv
clus             M0 M1 MX
  REC8 MUTATED    1  0  3
  REC8 WILD-TYPE 38  3 27
D448V6, multiclass
    clus
vv   REC8 MUTATED REC8 WILD-TYPE
  M0            1             38
  M1            0              3
  MX            3             27
D448V7, binary
                cls
clus              0  1
  REC8 MUTATED    3  1
  REC8 WILD-TYPE 33 35
[1] "tbl2"
                cls
clus             [,1] [,2]
  REC8 MUTATED      3    1
  REC8 WILD-TYPE   33   35
        clus
vv       REC8 MUTATED REC8 WILD-TYPE
  FEMALE            3             33
  MALE              1             35
                vv
clus             PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  REC8 MUTATED                                     4
  REC8 WILD-TYPE                                  61
                vv
clus             PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  REC8 MUTATED                                       0
  REC8 WILD-TYPE                                     4
                vv
clus             PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  REC8 MUTATED                                                  0
  REC8 WILD-TYPE                                                2
D448V8, multiclass
                                                  clus
vv                                                 REC8 MUTATED REC8 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                         4             61
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                       0              4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA            0              2
D448V9, continuous
[1] "Remove cluster labels:" "REC8 MUTATED"          
clus
  REC8 MUTATED REC8 WILD-TYPE 
             1             21 
    TCGA-F2-6880     TCGA-FB-A4P5     TCGA-FB-A4P6     TCGA-FB-A5VM 
"REC8 WILD-TYPE" "REC8 WILD-TYPE" "REC8 WILD-TYPE" "REC8 WILD-TYPE" 
    TCGA-FB-A78T     TCGA-FB-A7DR     TCGA-H6-8124     TCGA-H6-A45N 
"REC8 WILD-TYPE" "REC8 WILD-TYPE" "REC8 WILD-TYPE" "REC8 WILD-TYPE" 
    TCGA-H8-A6C1     TCGA-IB-7644     TCGA-IB-7649     TCGA-IB-7885 
"REC8 WILD-TYPE" "REC8 WILD-TYPE" "REC8 WILD-TYPE" "REC8 WILD-TYPE" 
    TCGA-IB-7886     TCGA-IB-7887     TCGA-IB-7891     TCGA-IB-8126 
"REC8 WILD-TYPE" "REC8 WILD-TYPE" "REC8 WILD-TYPE" "REC8 WILD-TYPE" 
    TCGA-IB-8127     TCGA-IB-A5SS     TCGA-IB-A6UG     TCGA-LB-A7SX 
"REC8 WILD-TYPE" "REC8 WILD-TYPE" "REC8 WILD-TYPE" "REC8 WILD-TYPE" 
    TCGA-OE-A75W 
"REC8 WILD-TYPE" 
D448V10, continuous
[1] "Remove cluster labels:" "REC8 MUTATED"          
clus
  REC8 MUTATED REC8 WILD-TYPE 
             1             18 
    TCGA-FB-A4P5     TCGA-FB-A4P6     TCGA-FB-A5VM     TCGA-FB-A78T 
"REC8 WILD-TYPE" "REC8 WILD-TYPE" "REC8 WILD-TYPE" "REC8 WILD-TYPE" 
    TCGA-FB-A7DR     TCGA-H6-8124     TCGA-H8-A6C1     TCGA-IB-7644 
"REC8 WILD-TYPE" "REC8 WILD-TYPE" "REC8 WILD-TYPE" "REC8 WILD-TYPE" 
    TCGA-IB-7649     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7891 
"REC8 WILD-TYPE" "REC8 WILD-TYPE" "REC8 WILD-TYPE" "REC8 WILD-TYPE" 
    TCGA-IB-8126     TCGA-IB-8127     TCGA-IB-A5SS     TCGA-IB-A6UG 
"REC8 WILD-TYPE" "REC8 WILD-TYPE" "REC8 WILD-TYPE" "REC8 WILD-TYPE" 
    TCGA-LB-A7SX     TCGA-OE-A75W 
"REC8 WILD-TYPE" "REC8 WILD-TYPE" 
                vv
clus             R0 R1 RX
  REC8 MUTATED    4  0  0
  REC8 WILD-TYPE 38 24  2
D448V11, multiclass
    clus
vv   REC8 MUTATED REC8 WILD-TYPE
  R0            4             38
  R1            0             24
  RX            0              2
D448V12, continuous

Clustering(449) Variable = PIH1D2 MUTATION ANALYSIS
D449V1, survival
                  sevent
clus2               0  1
  PIH1D2 MUTATED    1  2
  PIH1D2 WILD-TYPE 39 27
  PIH1D2 MUTATED PIH1D2 WILD-TYPE 
               3               66 
  PIH1D2 MUTATED PIH1D2 WILD-TYPE 
               2               27 
$`PIH1D2 MUTATED`
TCGA-F2-7276 TCGA-HZ-8001 TCGA-IB-7651 
        7.10         0.62        19.82 

$`PIH1D2 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-A44G TCGA-F2-A44H TCGA-FB-A4P5 
       10.98         9.70        11.84         5.03        19.27         0.13 
TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR TCGA-FZ-5920 
       11.93        12.66         2.47         0.03         5.46         2.01 
TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7289 
       36.20        20.81        12.89         7.66        13.02         7.89 
TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 
        0.92         0.66         0.13         0.26        12.13        11.87 
TCGA-HZ-7926 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 
        0.26         0.79         0.69         3.95         0.92         0.53 
TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK 
        0.16         2.99         0.76         0.95         6.38         1.51 
TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7652 
       11.41        49.38         4.77        21.90        15.35        15.65 
TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 
       27.98         4.04         3.62        43.79        15.81        19.66 
TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO 
       16.04         3.85        15.98         0.56        17.16        10.82 
TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX 
        9.86         7.20        15.12         0.26         1.35         4.18 
TCGA-OE-A75W TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
        3.62         8.12        13.68        16.80        14.14        18.67 

  PIH1D2 MUTATED PIH1D2 WILD-TYPE 
            0.62             0.03 
  PIH1D2 MUTATED PIH1D2 WILD-TYPE 
           19.82            49.38 
  PIH1D2 MUTATED PIH1D2 WILD-TYPE 
           7.100            7.775 
[1] "0.6 - 19.8 (7.1)" "0.0 - 49.4 (7.8)"
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
"PIH1D2 WILD-TYPE" "PIH1D2 WILD-TYPE" "PIH1D2 WILD-TYPE"   "PIH1D2 MUTATED" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"PIH1D2 WILD-TYPE" "PIH1D2 WILD-TYPE" "PIH1D2 WILD-TYPE" "PIH1D2 WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
"PIH1D2 WILD-TYPE" "PIH1D2 WILD-TYPE" "PIH1D2 WILD-TYPE" "PIH1D2 WILD-TYPE" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"PIH1D2 WILD-TYPE" "PIH1D2 WILD-TYPE" "PIH1D2 WILD-TYPE" "PIH1D2 WILD-TYPE" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
"PIH1D2 WILD-TYPE" "PIH1D2 WILD-TYPE" "PIH1D2 WILD-TYPE" "PIH1D2 WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
"PIH1D2 WILD-TYPE" "PIH1D2 WILD-TYPE" "PIH1D2 WILD-TYPE" "PIH1D2 WILD-TYPE" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"PIH1D2 WILD-TYPE" "PIH1D2 WILD-TYPE"   "PIH1D2 MUTATED" "PIH1D2 WILD-TYPE" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
"PIH1D2 WILD-TYPE" "PIH1D2 WILD-TYPE" "PIH1D2 WILD-TYPE" "PIH1D2 WILD-TYPE" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
"PIH1D2 WILD-TYPE" "PIH1D2 WILD-TYPE" "PIH1D2 WILD-TYPE" "PIH1D2 WILD-TYPE" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
"PIH1D2 WILD-TYPE" "PIH1D2 WILD-TYPE" "PIH1D2 WILD-TYPE" "PIH1D2 WILD-TYPE" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
"PIH1D2 WILD-TYPE" "PIH1D2 WILD-TYPE" "PIH1D2 WILD-TYPE"   "PIH1D2 MUTATED" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
"PIH1D2 WILD-TYPE" "PIH1D2 WILD-TYPE" "PIH1D2 WILD-TYPE" "PIH1D2 WILD-TYPE" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
"PIH1D2 WILD-TYPE" "PIH1D2 WILD-TYPE" "PIH1D2 WILD-TYPE" "PIH1D2 WILD-TYPE" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
"PIH1D2 WILD-TYPE" "PIH1D2 WILD-TYPE" "PIH1D2 WILD-TYPE" "PIH1D2 WILD-TYPE" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"PIH1D2 WILD-TYPE" "PIH1D2 WILD-TYPE" "PIH1D2 WILD-TYPE" "PIH1D2 WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"PIH1D2 WILD-TYPE" "PIH1D2 WILD-TYPE" "PIH1D2 WILD-TYPE" "PIH1D2 WILD-TYPE" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
"PIH1D2 WILD-TYPE" "PIH1D2 WILD-TYPE" "PIH1D2 WILD-TYPE" "PIH1D2 WILD-TYPE" 
      TCGA-US-A77J 
"PIH1D2 WILD-TYPE" 
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
"PIH1D2 WILD-TYPE" "PIH1D2 WILD-TYPE" "PIH1D2 WILD-TYPE"   "PIH1D2 MUTATED" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"PIH1D2 WILD-TYPE" "PIH1D2 WILD-TYPE" "PIH1D2 WILD-TYPE" "PIH1D2 WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
"PIH1D2 WILD-TYPE" "PIH1D2 WILD-TYPE" "PIH1D2 WILD-TYPE" "PIH1D2 WILD-TYPE" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"PIH1D2 WILD-TYPE" "PIH1D2 WILD-TYPE" "PIH1D2 WILD-TYPE" "PIH1D2 WILD-TYPE" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
"PIH1D2 WILD-TYPE" "PIH1D2 WILD-TYPE" "PIH1D2 WILD-TYPE" "PIH1D2 WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
"PIH1D2 WILD-TYPE" "PIH1D2 WILD-TYPE" "PIH1D2 WILD-TYPE" "PIH1D2 WILD-TYPE" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"PIH1D2 WILD-TYPE" "PIH1D2 WILD-TYPE"   "PIH1D2 MUTATED" "PIH1D2 WILD-TYPE" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
"PIH1D2 WILD-TYPE" "PIH1D2 WILD-TYPE" "PIH1D2 WILD-TYPE" "PIH1D2 WILD-TYPE" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
"PIH1D2 WILD-TYPE" "PIH1D2 WILD-TYPE" "PIH1D2 WILD-TYPE" "PIH1D2 WILD-TYPE" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
"PIH1D2 WILD-TYPE" "PIH1D2 WILD-TYPE" "PIH1D2 WILD-TYPE" "PIH1D2 WILD-TYPE" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
"PIH1D2 WILD-TYPE" "PIH1D2 WILD-TYPE" "PIH1D2 WILD-TYPE"   "PIH1D2 MUTATED" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
"PIH1D2 WILD-TYPE" "PIH1D2 WILD-TYPE" "PIH1D2 WILD-TYPE" "PIH1D2 WILD-TYPE" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
"PIH1D2 WILD-TYPE" "PIH1D2 WILD-TYPE" "PIH1D2 WILD-TYPE" "PIH1D2 WILD-TYPE" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
"PIH1D2 WILD-TYPE" "PIH1D2 WILD-TYPE" "PIH1D2 WILD-TYPE" "PIH1D2 WILD-TYPE" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"PIH1D2 WILD-TYPE" "PIH1D2 WILD-TYPE" "PIH1D2 WILD-TYPE" "PIH1D2 WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"PIH1D2 WILD-TYPE" "PIH1D2 WILD-TYPE" "PIH1D2 WILD-TYPE" "PIH1D2 WILD-TYPE" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
"PIH1D2 WILD-TYPE" "PIH1D2 WILD-TYPE" "PIH1D2 WILD-TYPE" "PIH1D2 WILD-TYPE" 
      TCGA-US-A77J 
"PIH1D2 WILD-TYPE" 
      TCGA-F2-6879       TCGA-F2-6880       TCGA-F2-7273       TCGA-F2-7276 
"PIH1D2 WILD-TYPE" "PIH1D2 WILD-TYPE" "PIH1D2 WILD-TYPE"   "PIH1D2 MUTATED" 
      TCGA-F2-A44G       TCGA-F2-A44H       TCGA-FB-A4P5       TCGA-FB-A4P6 
"PIH1D2 WILD-TYPE" "PIH1D2 WILD-TYPE" "PIH1D2 WILD-TYPE" "PIH1D2 WILD-TYPE" 
      TCGA-FB-A545       TCGA-FB-A5VM       TCGA-FB-A78T       TCGA-FB-A7DR 
"PIH1D2 WILD-TYPE" "PIH1D2 WILD-TYPE" "PIH1D2 WILD-TYPE" "PIH1D2 WILD-TYPE" 
      TCGA-FZ-5920       TCGA-FZ-5922       TCGA-FZ-5923       TCGA-H6-8124 
"PIH1D2 WILD-TYPE" "PIH1D2 WILD-TYPE" "PIH1D2 WILD-TYPE" "PIH1D2 WILD-TYPE" 
      TCGA-H6-A45N       TCGA-H8-A6C1       TCGA-HZ-7289       TCGA-HZ-7918 
"PIH1D2 WILD-TYPE" "PIH1D2 WILD-TYPE" "PIH1D2 WILD-TYPE" "PIH1D2 WILD-TYPE" 
      TCGA-HZ-7919       TCGA-HZ-7922       TCGA-HZ-7923       TCGA-HZ-7924 
"PIH1D2 WILD-TYPE" "PIH1D2 WILD-TYPE" "PIH1D2 WILD-TYPE" "PIH1D2 WILD-TYPE" 
      TCGA-HZ-7925       TCGA-HZ-7926       TCGA-HZ-8001       TCGA-HZ-8002 
"PIH1D2 WILD-TYPE" "PIH1D2 WILD-TYPE"   "PIH1D2 MUTATED" "PIH1D2 WILD-TYPE" 
      TCGA-HZ-8003       TCGA-HZ-8005       TCGA-HZ-8315       TCGA-HZ-8317 
"PIH1D2 WILD-TYPE" "PIH1D2 WILD-TYPE" "PIH1D2 WILD-TYPE" "PIH1D2 WILD-TYPE" 
      TCGA-HZ-8636       TCGA-HZ-8638       TCGA-HZ-A49G       TCGA-HZ-A49H 
"PIH1D2 WILD-TYPE" "PIH1D2 WILD-TYPE" "PIH1D2 WILD-TYPE" "PIH1D2 WILD-TYPE" 
      TCGA-HZ-A4BH       TCGA-HZ-A4BK       TCGA-IB-7644       TCGA-IB-7645 
"PIH1D2 WILD-TYPE" "PIH1D2 WILD-TYPE" "PIH1D2 WILD-TYPE" "PIH1D2 WILD-TYPE" 
      TCGA-IB-7646       TCGA-IB-7647       TCGA-IB-7649       TCGA-IB-7651 
"PIH1D2 WILD-TYPE" "PIH1D2 WILD-TYPE" "PIH1D2 WILD-TYPE"   "PIH1D2 MUTATED" 
      TCGA-IB-7652       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7887 
"PIH1D2 WILD-TYPE" "PIH1D2 WILD-TYPE" "PIH1D2 WILD-TYPE" "PIH1D2 WILD-TYPE" 
      TCGA-IB-7888       TCGA-IB-7889       TCGA-IB-7890       TCGA-IB-7891 
"PIH1D2 WILD-TYPE" "PIH1D2 WILD-TYPE" "PIH1D2 WILD-TYPE" "PIH1D2 WILD-TYPE" 
      TCGA-IB-7893       TCGA-IB-7897       TCGA-IB-8126       TCGA-IB-8127 
"PIH1D2 WILD-TYPE" "PIH1D2 WILD-TYPE" "PIH1D2 WILD-TYPE" "PIH1D2 WILD-TYPE" 
      TCGA-IB-A5SO       TCGA-IB-A5SP       TCGA-IB-A5SQ       TCGA-IB-A5SS 
"PIH1D2 WILD-TYPE" "PIH1D2 WILD-TYPE" "PIH1D2 WILD-TYPE" "PIH1D2 WILD-TYPE" 
      TCGA-IB-A5ST       TCGA-IB-A6UG       TCGA-LB-A7SX       TCGA-OE-A75W 
"PIH1D2 WILD-TYPE" "PIH1D2 WILD-TYPE" "PIH1D2 WILD-TYPE" "PIH1D2 WILD-TYPE" 
      TCGA-PZ-A5RE       TCGA-Q3-A5QY       TCGA-US-A779       TCGA-US-A77E 
"PIH1D2 WILD-TYPE" "PIH1D2 WILD-TYPE" "PIH1D2 WILD-TYPE" "PIH1D2 WILD-TYPE" 
      TCGA-US-A77J 
"PIH1D2 WILD-TYPE" 
[1] "hr=" "1.5"
D449V2, continuous
                  vv
clus               STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  PIH1D2 MUTATED          0        0         0         2         1        0
  PIH1D2 WILD-TYPE        1        4        11        49         1        3
D449V3, multiclass
                  vv
clus               T1+T2 T3+T4
  PIH1D2 MUTATED       0     3
  PIH1D2 WILD-TYPE     6    63
D449V4, multiclass
       clus
vv      PIH1D2 MUTATED PIH1D2 WILD-TYPE
  T1+T2              0                6
  T3+T4              3               63
D449V5, binary
                  cls
clus                0  1
  PIH1D2 MUTATED    1  2
  PIH1D2 WILD-TYPE 16 52
[1] "tbl2"
                  cls
clus               [,1] [,2]
  PIH1D2 MUTATED      1    2
  PIH1D2 WILD-TYPE   16   52
   clus
vv  PIH1D2 MUTATED PIH1D2 WILD-TYPE
  0              1               16
  1              2               52
                  vv
clus               M0 M1 MX
  PIH1D2 MUTATED    2  0  1
  PIH1D2 WILD-TYPE 37  3 29
D449V6, multiclass
    clus
vv   PIH1D2 MUTATED PIH1D2 WILD-TYPE
  M0              2               37
  M1              0                3
  MX              1               29
D449V7, binary
                  cls
clus                0  1
  PIH1D2 MUTATED    1  2
  PIH1D2 WILD-TYPE 35 34
[1] "tbl2"
                  cls
clus               [,1] [,2]
  PIH1D2 MUTATED      1    2
  PIH1D2 WILD-TYPE   35   34
        clus
vv       PIH1D2 MUTATED PIH1D2 WILD-TYPE
  FEMALE              1               35
  MALE                2               34
                  vv
clus               PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  PIH1D2 MUTATED                                     3
  PIH1D2 WILD-TYPE                                  62
                  vv
clus               PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  PIH1D2 MUTATED                                       0
  PIH1D2 WILD-TYPE                                     4
                  vv
clus               PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  PIH1D2 MUTATED                                                  0
  PIH1D2 WILD-TYPE                                                2
D449V8, multiclass
                                                  clus
vv                                                 PIH1D2 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                           3
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                         0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA              0
                                                  clus
vv                                                 PIH1D2 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                            62
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                           4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                2
D449V9, continuous
[1] "Remove cluster labels:" "PIH1D2 MUTATED"        
clus
  PIH1D2 MUTATED PIH1D2 WILD-TYPE 
               1               21 
      TCGA-F2-6880       TCGA-FB-A4P5       TCGA-FB-A4P6       TCGA-FB-A5VM 
"PIH1D2 WILD-TYPE" "PIH1D2 WILD-TYPE" "PIH1D2 WILD-TYPE" "PIH1D2 WILD-TYPE" 
      TCGA-FB-A78T       TCGA-FB-A7DR       TCGA-H6-8124       TCGA-H6-A45N 
"PIH1D2 WILD-TYPE" "PIH1D2 WILD-TYPE" "PIH1D2 WILD-TYPE" "PIH1D2 WILD-TYPE" 
      TCGA-H8-A6C1       TCGA-IB-7644       TCGA-IB-7649       TCGA-IB-7885 
"PIH1D2 WILD-TYPE" "PIH1D2 WILD-TYPE" "PIH1D2 WILD-TYPE" "PIH1D2 WILD-TYPE" 
      TCGA-IB-7886       TCGA-IB-7887       TCGA-IB-7891       TCGA-IB-8126 
"PIH1D2 WILD-TYPE" "PIH1D2 WILD-TYPE" "PIH1D2 WILD-TYPE" "PIH1D2 WILD-TYPE" 
      TCGA-IB-8127       TCGA-IB-A5SS       TCGA-IB-A6UG       TCGA-LB-A7SX 
"PIH1D2 WILD-TYPE" "PIH1D2 WILD-TYPE" "PIH1D2 WILD-TYPE" "PIH1D2 WILD-TYPE" 
      TCGA-OE-A75W 
"PIH1D2 WILD-TYPE" 
D449V10, continuous
[1] "Remove cluster labels:" "PIH1D2 MUTATED"        
clus
  PIH1D2 MUTATED PIH1D2 WILD-TYPE 
               1               18 
      TCGA-FB-A4P5       TCGA-FB-A4P6       TCGA-FB-A5VM       TCGA-FB-A78T 
"PIH1D2 WILD-TYPE" "PIH1D2 WILD-TYPE" "PIH1D2 WILD-TYPE" "PIH1D2 WILD-TYPE" 
      TCGA-FB-A7DR       TCGA-H6-8124       TCGA-H8-A6C1       TCGA-IB-7644 
"PIH1D2 WILD-TYPE" "PIH1D2 WILD-TYPE" "PIH1D2 WILD-TYPE" "PIH1D2 WILD-TYPE" 
      TCGA-IB-7649       TCGA-IB-7885       TCGA-IB-7886       TCGA-IB-7891 
"PIH1D2 WILD-TYPE" "PIH1D2 WILD-TYPE" "PIH1D2 WILD-TYPE" "PIH1D2 WILD-TYPE" 
      TCGA-IB-8126       TCGA-IB-8127       TCGA-IB-A5SS       TCGA-IB-A6UG 
"PIH1D2 WILD-TYPE" "PIH1D2 WILD-TYPE" "PIH1D2 WILD-TYPE" "PIH1D2 WILD-TYPE" 
      TCGA-LB-A7SX       TCGA-OE-A75W 
"PIH1D2 WILD-TYPE" "PIH1D2 WILD-TYPE" 
                  vv
clus               R0 R1 RX
  PIH1D2 MUTATED    3  0  0
  PIH1D2 WILD-TYPE 39 24  2
D449V11, multiclass
    clus
vv   PIH1D2 MUTATED PIH1D2 WILD-TYPE
  R0              3               39
  R1              0               24
  RX              0                2
D449V12, continuous

Clustering(450) Variable = BRAF MUTATION ANALYSIS
D450V1, survival
                sevent
clus2             0  1
  BRAF MUTATED    2  1
  BRAF WILD-TYPE 38 28
  BRAF MUTATED BRAF WILD-TYPE 
             3             66 
  BRAF MUTATED BRAF WILD-TYPE 
             1             28 
$`BRAF MUTATED`
TCGA-FB-A545 TCGA-HZ-8001 TCGA-US-A77E 
       12.66         0.62        14.14 

$`BRAF WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P5 TCGA-FB-A4P6 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR TCGA-FZ-5920 
        0.13        11.93         2.47         0.03         5.46         2.01 
TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7289 
       36.20        20.81        12.89         7.66        13.02         7.89 
TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 
        0.92         0.66         0.13         0.26        12.13        11.87 
TCGA-HZ-7926 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 
        0.26         0.79         0.69         3.95         0.92         0.53 
TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK 
        0.16         2.99         0.76         0.95         6.38         1.51 
TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7651 
       11.41        49.38         4.77        21.90        15.35        19.82 
TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 
       15.65        27.98         4.04         3.62        43.79        15.81 
TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-8127 
       19.66        16.04         3.85        15.98         0.56        17.16 
TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG 
       10.82         9.86         7.20        15.12         0.26         1.35 
TCGA-LB-A7SX TCGA-OE-A75W TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77J 
        4.18         3.62         8.12        13.68        16.80        18.67 

  BRAF MUTATED BRAF WILD-TYPE 
          0.62           0.03 
  BRAF MUTATED BRAF WILD-TYPE 
         14.14          49.38 
  BRAF MUTATED BRAF WILD-TYPE 
         12.66           7.43 
[1] "0.6 - 14.1 (12.7)" "0.0 - 49.4 (7.4)" 
    TCGA-F2-6879     TCGA-F2-6880     TCGA-F2-7273     TCGA-F2-7276 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-F2-A44G     TCGA-F2-A44H     TCGA-FB-A4P5     TCGA-FB-A4P6 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-FB-A545     TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-FB-A7DR 
  "BRAF MUTATED" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-FZ-5920     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-H6-8124 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-H6-A45N     TCGA-H8-A6C1     TCGA-HZ-7289     TCGA-HZ-7918 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-HZ-7919     TCGA-HZ-7922     TCGA-HZ-7923     TCGA-HZ-7924 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-HZ-7925     TCGA-HZ-7926     TCGA-HZ-8001     TCGA-HZ-8002 
"BRAF WILD-TYPE" "BRAF WILD-TYPE"   "BRAF MUTATED" "BRAF WILD-TYPE" 
    TCGA-HZ-8003     TCGA-HZ-8005     TCGA-HZ-8315     TCGA-HZ-8317 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-HZ-8636     TCGA-HZ-8638     TCGA-HZ-A49G     TCGA-HZ-A49H 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-IB-7644     TCGA-IB-7645 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7651 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-IB-7888     TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-IB-7893     TCGA-IB-7897     TCGA-IB-8126     TCGA-IB-8127 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-IB-A5ST     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-PZ-A5RE     TCGA-Q3-A5QY     TCGA-US-A779     TCGA-US-A77E 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE"   "BRAF MUTATED" 
    TCGA-US-A77J 
"BRAF WILD-TYPE" 
    TCGA-F2-6879     TCGA-F2-6880     TCGA-F2-7273     TCGA-F2-7276 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-F2-A44G     TCGA-F2-A44H     TCGA-FB-A4P5     TCGA-FB-A4P6 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-FB-A545     TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-FB-A7DR 
  "BRAF MUTATED" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-FZ-5920     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-H6-8124 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-H6-A45N     TCGA-H8-A6C1     TCGA-HZ-7289     TCGA-HZ-7918 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-HZ-7919     TCGA-HZ-7922     TCGA-HZ-7923     TCGA-HZ-7924 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-HZ-7925     TCGA-HZ-7926     TCGA-HZ-8001     TCGA-HZ-8002 
"BRAF WILD-TYPE" "BRAF WILD-TYPE"   "BRAF MUTATED" "BRAF WILD-TYPE" 
    TCGA-HZ-8003     TCGA-HZ-8005     TCGA-HZ-8315     TCGA-HZ-8317 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-HZ-8636     TCGA-HZ-8638     TCGA-HZ-A49G     TCGA-HZ-A49H 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-IB-7644     TCGA-IB-7645 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7651 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-IB-7888     TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-IB-7893     TCGA-IB-7897     TCGA-IB-8126     TCGA-IB-8127 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-IB-A5ST     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-PZ-A5RE     TCGA-Q3-A5QY     TCGA-US-A779     TCGA-US-A77E 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE"   "BRAF MUTATED" 
    TCGA-US-A77J 
"BRAF WILD-TYPE" 
    TCGA-F2-6879     TCGA-F2-6880     TCGA-F2-7273     TCGA-F2-7276 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-F2-A44G     TCGA-F2-A44H     TCGA-FB-A4P5     TCGA-FB-A4P6 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-FB-A545     TCGA-FB-A5VM     TCGA-FB-A78T     TCGA-FB-A7DR 
  "BRAF MUTATED" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-FZ-5920     TCGA-FZ-5922     TCGA-FZ-5923     TCGA-H6-8124 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-H6-A45N     TCGA-H8-A6C1     TCGA-HZ-7289     TCGA-HZ-7918 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-HZ-7919     TCGA-HZ-7922     TCGA-HZ-7923     TCGA-HZ-7924 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-HZ-7925     TCGA-HZ-7926     TCGA-HZ-8001     TCGA-HZ-8002 
"BRAF WILD-TYPE" "BRAF WILD-TYPE"   "BRAF MUTATED" "BRAF WILD-TYPE" 
    TCGA-HZ-8003     TCGA-HZ-8005     TCGA-HZ-8315     TCGA-HZ-8317 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-HZ-8636     TCGA-HZ-8638     TCGA-HZ-A49G     TCGA-HZ-A49H 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-IB-7644     TCGA-IB-7645 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7651 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-IB-7652     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-IB-7888     TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-IB-7893     TCGA-IB-7897     TCGA-IB-8126     TCGA-IB-8127 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-IB-A5SO     TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-IB-A5ST     TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-PZ-A5RE     TCGA-Q3-A5QY     TCGA-US-A779     TCGA-US-A77E 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE"   "BRAF MUTATED" 
    TCGA-US-A77J 
"BRAF WILD-TYPE" 
[1] "hr=" "1.2"
D450V2, continuous
                vv
clus             STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  BRAF MUTATED          0        0         0         2         1        0
  BRAF WILD-TYPE        1        4        11        49         1        3
D450V3, multiclass
                vv
clus             T1+T2 T3+T4
  BRAF MUTATED       0     3
  BRAF WILD-TYPE     6    63
D450V4, multiclass
       clus
vv      BRAF MUTATED BRAF WILD-TYPE
  T1+T2            0              6
  T3+T4            3             63
D450V5, binary
                cls
clus              0  1
  BRAF MUTATED    1  2
  BRAF WILD-TYPE 16 52
[1] "tbl2"
                cls
clus             [,1] [,2]
  BRAF MUTATED      1    2
  BRAF WILD-TYPE   16   52
   clus
vv  BRAF MUTATED BRAF WILD-TYPE
  0            1             16
  1            2             52
                vv
clus             M0 M1 MX
  BRAF MUTATED    1  0  2
  BRAF WILD-TYPE 38  3 28
D450V6, multiclass
    clus
vv   BRAF MUTATED BRAF WILD-TYPE
  M0            1             38
  M1            0              3
  MX            2             28
D450V7, binary
                cls
clus              0  1
  BRAF MUTATED    1  2
  BRAF WILD-TYPE 35 34
[1] "tbl2"
                cls
clus             [,1] [,2]
  BRAF MUTATED      1    2
  BRAF WILD-TYPE   35   34
        clus
vv       BRAF MUTATED BRAF WILD-TYPE
  FEMALE            1             35
  MALE              2             34
                vv
clus             PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  BRAF MUTATED                                     3
  BRAF WILD-TYPE                                  62
                vv
clus             PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  BRAF MUTATED                                       0
  BRAF WILD-TYPE                                     4
                vv
clus             PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  BRAF MUTATED                                                  0
  BRAF WILD-TYPE                                                2
D450V8, multiclass
                                                  clus
vv                                                 BRAF MUTATED BRAF WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                         3             62
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                       0              4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA            0              2
D450V9, continuous
D450V10, continuous
                vv
clus             R0 R1 RX
  BRAF MUTATED    1  1  0
  BRAF WILD-TYPE 41 23  2
D450V11, multiclass
[1] "Remove cluster labels:" "BRAF MUTATED"          
clus
  BRAF MUTATED BRAF WILD-TYPE 
             2             66 
    TCGA-F2-6879     TCGA-F2-6880     TCGA-F2-7273     TCGA-F2-7276 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-F2-A44G     TCGA-F2-A44H     TCGA-FB-A4P5     TCGA-FB-A5VM 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-FB-A78T     TCGA-FB-A7DR     TCGA-FZ-5920     TCGA-FZ-5922 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-FZ-5923     TCGA-H6-8124     TCGA-H8-A6C1     TCGA-HZ-7289 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-HZ-7918     TCGA-HZ-7919     TCGA-HZ-7920     TCGA-HZ-7922 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-HZ-7923     TCGA-HZ-7924     TCGA-HZ-7925     TCGA-HZ-7926 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-HZ-8002     TCGA-HZ-8003     TCGA-HZ-8005     TCGA-HZ-8315 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-HZ-8317     TCGA-HZ-8636     TCGA-HZ-8637     TCGA-HZ-8638 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-HZ-A49G     TCGA-HZ-A49H     TCGA-HZ-A49I     TCGA-HZ-A4BH 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-HZ-A4BK     TCGA-IB-7644     TCGA-IB-7645     TCGA-IB-7646 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7651     TCGA-IB-7652 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887     TCGA-IB-7888 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7891     TCGA-IB-7893 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-IB-7897     TCGA-IB-8126     TCGA-IB-8127     TCGA-IB-A5SO 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-IB-A5SP     TCGA-IB-A5SQ     TCGA-IB-A5SS     TCGA-IB-A5ST 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-IB-A6UG     TCGA-LB-A7SX     TCGA-OE-A75W     TCGA-Q3-A5QY 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-US-A779     TCGA-US-A77J 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" 
D450V12, continuous

Clustering(451) Variable = WDR90 MUTATION ANALYSIS
D451V1, survival
                 sevent
clus2              0  1
  WDR90 MUTATED    3  2
  WDR90 WILD-TYPE 37 27
  WDR90 MUTATED WDR90 WILD-TYPE 
              5              64 
  WDR90 MUTATED WDR90 WILD-TYPE 
              2              27 
$`WDR90 MUTATED`
TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8317 TCGA-IB-7651 
        0.79         0.69         3.95         0.53        19.82 

$`WDR90 WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P5 TCGA-FB-A4P6 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR 
        0.13        11.93        12.66         2.47         0.03         5.46 
TCGA-FZ-5920 TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 
        2.01        36.20        20.81        12.89         7.66        13.02 
TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 
        7.89         0.92         0.66         0.13         0.26        12.13 
TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8315 TCGA-HZ-8636 TCGA-HZ-8638 
       11.87         0.26         0.62         0.92         0.16         2.99 
TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7645 
        0.76         0.95         6.38         1.51        11.41        49.38 
TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7886 
        4.77        21.90        15.35        15.65        27.98         4.04 
TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-7893 
        3.62        43.79        15.81        19.66        16.04         3.85 
TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ 
       15.98         0.56        17.16        10.82         9.86         7.20 
TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W TCGA-PZ-A5RE 
       15.12         0.26         1.35         4.18         3.62         8.12 
TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
       13.68        16.80        14.14        18.67 

  WDR90 MUTATED WDR90 WILD-TYPE 
           0.53            0.03 
  WDR90 MUTATED WDR90 WILD-TYPE 
          19.82           49.38 
  WDR90 MUTATED WDR90 WILD-TYPE 
          0.790           8.005 
[1] "0.5 - 19.8 (0.8)" "0.0 - 49.4 (8.0)"
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"WDR90 WILD-TYPE" "WDR90 WILD-TYPE" "WDR90 WILD-TYPE" "WDR90 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"WDR90 WILD-TYPE" "WDR90 WILD-TYPE" "WDR90 WILD-TYPE" "WDR90 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"WDR90 WILD-TYPE" "WDR90 WILD-TYPE" "WDR90 WILD-TYPE" "WDR90 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"WDR90 WILD-TYPE" "WDR90 WILD-TYPE" "WDR90 WILD-TYPE" "WDR90 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"WDR90 WILD-TYPE" "WDR90 WILD-TYPE" "WDR90 WILD-TYPE" "WDR90 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"WDR90 WILD-TYPE" "WDR90 WILD-TYPE" "WDR90 WILD-TYPE" "WDR90 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"WDR90 WILD-TYPE" "WDR90 WILD-TYPE" "WDR90 WILD-TYPE"   "WDR90 MUTATED" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
  "WDR90 MUTATED"   "WDR90 MUTATED" "WDR90 WILD-TYPE"   "WDR90 MUTATED" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"WDR90 WILD-TYPE" "WDR90 WILD-TYPE" "WDR90 WILD-TYPE" "WDR90 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"WDR90 WILD-TYPE" "WDR90 WILD-TYPE" "WDR90 WILD-TYPE" "WDR90 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"WDR90 WILD-TYPE" "WDR90 WILD-TYPE" "WDR90 WILD-TYPE"   "WDR90 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"WDR90 WILD-TYPE" "WDR90 WILD-TYPE" "WDR90 WILD-TYPE" "WDR90 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"WDR90 WILD-TYPE" "WDR90 WILD-TYPE" "WDR90 WILD-TYPE" "WDR90 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"WDR90 WILD-TYPE" "WDR90 WILD-TYPE" "WDR90 WILD-TYPE" "WDR90 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"WDR90 WILD-TYPE" "WDR90 WILD-TYPE" "WDR90 WILD-TYPE" "WDR90 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"WDR90 WILD-TYPE" "WDR90 WILD-TYPE" "WDR90 WILD-TYPE" "WDR90 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"WDR90 WILD-TYPE" "WDR90 WILD-TYPE" "WDR90 WILD-TYPE" "WDR90 WILD-TYPE" 
     TCGA-US-A77J 
"WDR90 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"WDR90 WILD-TYPE" "WDR90 WILD-TYPE" "WDR90 WILD-TYPE" "WDR90 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"WDR90 WILD-TYPE" "WDR90 WILD-TYPE" "WDR90 WILD-TYPE" "WDR90 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"WDR90 WILD-TYPE" "WDR90 WILD-TYPE" "WDR90 WILD-TYPE" "WDR90 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"WDR90 WILD-TYPE" "WDR90 WILD-TYPE" "WDR90 WILD-TYPE" "WDR90 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"WDR90 WILD-TYPE" "WDR90 WILD-TYPE" "WDR90 WILD-TYPE" "WDR90 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"WDR90 WILD-TYPE" "WDR90 WILD-TYPE" "WDR90 WILD-TYPE" "WDR90 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"WDR90 WILD-TYPE" "WDR90 WILD-TYPE" "WDR90 WILD-TYPE"   "WDR90 MUTATED" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
  "WDR90 MUTATED"   "WDR90 MUTATED" "WDR90 WILD-TYPE"   "WDR90 MUTATED" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"WDR90 WILD-TYPE" "WDR90 WILD-TYPE" "WDR90 WILD-TYPE" "WDR90 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"WDR90 WILD-TYPE" "WDR90 WILD-TYPE" "WDR90 WILD-TYPE" "WDR90 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"WDR90 WILD-TYPE" "WDR90 WILD-TYPE" "WDR90 WILD-TYPE"   "WDR90 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"WDR90 WILD-TYPE" "WDR90 WILD-TYPE" "WDR90 WILD-TYPE" "WDR90 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"WDR90 WILD-TYPE" "WDR90 WILD-TYPE" "WDR90 WILD-TYPE" "WDR90 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"WDR90 WILD-TYPE" "WDR90 WILD-TYPE" "WDR90 WILD-TYPE" "WDR90 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"WDR90 WILD-TYPE" "WDR90 WILD-TYPE" "WDR90 WILD-TYPE" "WDR90 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"WDR90 WILD-TYPE" "WDR90 WILD-TYPE" "WDR90 WILD-TYPE" "WDR90 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"WDR90 WILD-TYPE" "WDR90 WILD-TYPE" "WDR90 WILD-TYPE" "WDR90 WILD-TYPE" 
     TCGA-US-A77J 
"WDR90 WILD-TYPE" 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"WDR90 WILD-TYPE" "WDR90 WILD-TYPE" "WDR90 WILD-TYPE" "WDR90 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6 
"WDR90 WILD-TYPE" "WDR90 WILD-TYPE" "WDR90 WILD-TYPE" "WDR90 WILD-TYPE" 
     TCGA-FB-A545      TCGA-FB-A5VM      TCGA-FB-A78T      TCGA-FB-A7DR 
"WDR90 WILD-TYPE" "WDR90 WILD-TYPE" "WDR90 WILD-TYPE" "WDR90 WILD-TYPE" 
     TCGA-FZ-5920      TCGA-FZ-5922      TCGA-FZ-5923      TCGA-H6-8124 
"WDR90 WILD-TYPE" "WDR90 WILD-TYPE" "WDR90 WILD-TYPE" "WDR90 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-H8-A6C1      TCGA-HZ-7289      TCGA-HZ-7918 
"WDR90 WILD-TYPE" "WDR90 WILD-TYPE" "WDR90 WILD-TYPE" "WDR90 WILD-TYPE" 
     TCGA-HZ-7919      TCGA-HZ-7922      TCGA-HZ-7923      TCGA-HZ-7924 
"WDR90 WILD-TYPE" "WDR90 WILD-TYPE" "WDR90 WILD-TYPE" "WDR90 WILD-TYPE" 
     TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001      TCGA-HZ-8002 
"WDR90 WILD-TYPE" "WDR90 WILD-TYPE" "WDR90 WILD-TYPE"   "WDR90 MUTATED" 
     TCGA-HZ-8003      TCGA-HZ-8005      TCGA-HZ-8315      TCGA-HZ-8317 
  "WDR90 MUTATED"   "WDR90 MUTATED" "WDR90 WILD-TYPE"   "WDR90 MUTATED" 
     TCGA-HZ-8636      TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H 
"WDR90 WILD-TYPE" "WDR90 WILD-TYPE" "WDR90 WILD-TYPE" "WDR90 WILD-TYPE" 
     TCGA-HZ-A4BH      TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645 
"WDR90 WILD-TYPE" "WDR90 WILD-TYPE" "WDR90 WILD-TYPE" "WDR90 WILD-TYPE" 
     TCGA-IB-7646      TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651 
"WDR90 WILD-TYPE" "WDR90 WILD-TYPE" "WDR90 WILD-TYPE"   "WDR90 MUTATED" 
     TCGA-IB-7652      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"WDR90 WILD-TYPE" "WDR90 WILD-TYPE" "WDR90 WILD-TYPE" "WDR90 WILD-TYPE" 
     TCGA-IB-7888      TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891 
"WDR90 WILD-TYPE" "WDR90 WILD-TYPE" "WDR90 WILD-TYPE" "WDR90 WILD-TYPE" 
     TCGA-IB-7893      TCGA-IB-7897      TCGA-IB-8126      TCGA-IB-8127 
"WDR90 WILD-TYPE" "WDR90 WILD-TYPE" "WDR90 WILD-TYPE" "WDR90 WILD-TYPE" 
     TCGA-IB-A5SO      TCGA-IB-A5SP      TCGA-IB-A5SQ      TCGA-IB-A5SS 
"WDR90 WILD-TYPE" "WDR90 WILD-TYPE" "WDR90 WILD-TYPE" "WDR90 WILD-TYPE" 
     TCGA-IB-A5ST      TCGA-IB-A6UG      TCGA-LB-A7SX      TCGA-OE-A75W 
"WDR90 WILD-TYPE" "WDR90 WILD-TYPE" "WDR90 WILD-TYPE" "WDR90 WILD-TYPE" 
     TCGA-PZ-A5RE      TCGA-Q3-A5QY      TCGA-US-A779      TCGA-US-A77E 
"WDR90 WILD-TYPE" "WDR90 WILD-TYPE" "WDR90 WILD-TYPE" "WDR90 WILD-TYPE" 
     TCGA-US-A77J 
"WDR90 WILD-TYPE" 
[1] "hr=" "1.6"
D451V2, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  WDR90 MUTATED          0        0         0         5         0        0
  WDR90 WILD-TYPE        1        4        11        46         2        3
D451V3, multiclass
                 vv
clus              T1+T2 T3+T4
  WDR90 MUTATED       0     5
  WDR90 WILD-TYPE     6    61
D451V4, multiclass
       clus
vv      WDR90 MUTATED WDR90 WILD-TYPE
  T1+T2             0               6
  T3+T4             5              61
D451V5, binary
                 cls
clus               0  1
  WDR90 MUTATED    0  5
  WDR90 WILD-TYPE 17 49
[1] "tbl2"
                 cls
clus              [,1] [,2]
  WDR90 MUTATED      0    5
  WDR90 WILD-TYPE   17   49
   clus
vv  WDR90 MUTATED WDR90 WILD-TYPE
  0             0              17
  1             5              49
                 vv
clus              M0 M1 MX
  WDR90 MUTATED    1  0  4
  WDR90 WILD-TYPE 38  3 26
D451V6, multiclass
    clus
vv   WDR90 MUTATED WDR90 WILD-TYPE
  M0             1              38
  M1             0               3
  MX             4              26
D451V7, binary
                 cls
clus               0  1
  WDR90 MUTATED    3  2
  WDR90 WILD-TYPE 33 34
[1] "tbl2"
                 cls
clus              [,1] [,2]
  WDR90 MUTATED      3    2
  WDR90 WILD-TYPE   33   34
        clus
vv       WDR90 MUTATED WDR90 WILD-TYPE
  FEMALE             3              33
  MALE               2              34
                 vv
clus              PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  WDR90 MUTATED                                     5
  WDR90 WILD-TYPE                                  60
                 vv
clus              PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  WDR90 MUTATED                                       0
  WDR90 WILD-TYPE                                     4
                 vv
clus              PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  WDR90 MUTATED                                                  0
  WDR90 WILD-TYPE                                                2
D451V8, multiclass
                                                  clus
vv                                                 WDR90 MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                          5
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                        0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA             0
                                                  clus
vv                                                 WDR90 WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                           60
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                          4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA               2
D451V9, continuous
[1] "Remove cluster labels:" "WDR90 MUTATED"         
clus
  WDR90 MUTATED WDR90 WILD-TYPE 
              1              21 
     TCGA-F2-6880      TCGA-FB-A4P5      TCGA-FB-A4P6      TCGA-FB-A5VM 
"WDR90 WILD-TYPE" "WDR90 WILD-TYPE" "WDR90 WILD-TYPE" "WDR90 WILD-TYPE" 
     TCGA-FB-A78T      TCGA-FB-A7DR      TCGA-H6-8124      TCGA-H6-A45N 
"WDR90 WILD-TYPE" "WDR90 WILD-TYPE" "WDR90 WILD-TYPE" "WDR90 WILD-TYPE" 
     TCGA-H8-A6C1      TCGA-IB-7644      TCGA-IB-7649      TCGA-IB-7885 
"WDR90 WILD-TYPE" "WDR90 WILD-TYPE" "WDR90 WILD-TYPE" "WDR90 WILD-TYPE" 
     TCGA-IB-7886      TCGA-IB-7887      TCGA-IB-7891      TCGA-IB-8126 
"WDR90 WILD-TYPE" "WDR90 WILD-TYPE" "WDR90 WILD-TYPE" "WDR90 WILD-TYPE" 
     TCGA-IB-8127      TCGA-IB-A5SS      TCGA-IB-A6UG      TCGA-LB-A7SX 
"WDR90 WILD-TYPE" "WDR90 WILD-TYPE" "WDR90 WILD-TYPE" "WDR90 WILD-TYPE" 
     TCGA-OE-A75W 
"WDR90 WILD-TYPE" 
D451V10, continuous
[1] "Remove cluster labels:" "WDR90 MUTATED"         
clus
  WDR90 MUTATED WDR90 WILD-TYPE 
              1              18 
     TCGA-FB-A4P5      TCGA-FB-A4P6      TCGA-FB-A5VM      TCGA-FB-A78T 
"WDR90 WILD-TYPE" "WDR90 WILD-TYPE" "WDR90 WILD-TYPE" "WDR90 WILD-TYPE" 
     TCGA-FB-A7DR      TCGA-H6-8124      TCGA-H8-A6C1      TCGA-IB-7644 
"WDR90 WILD-TYPE" "WDR90 WILD-TYPE" "WDR90 WILD-TYPE" "WDR90 WILD-TYPE" 
     TCGA-IB-7649      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7891 
"WDR90 WILD-TYPE" "WDR90 WILD-TYPE" "WDR90 WILD-TYPE" "WDR90 WILD-TYPE" 
     TCGA-IB-8126      TCGA-IB-8127      TCGA-IB-A5SS      TCGA-IB-A6UG 
"WDR90 WILD-TYPE" "WDR90 WILD-TYPE" "WDR90 WILD-TYPE" "WDR90 WILD-TYPE" 
     TCGA-LB-A7SX      TCGA-OE-A75W 
"WDR90 WILD-TYPE" "WDR90 WILD-TYPE" 
                 vv
clus              R0 R1 RX
  WDR90 MUTATED    3  2  0
  WDR90 WILD-TYPE 39 22  2
D451V11, multiclass
    clus
vv   WDR90 MUTATED WDR90 WILD-TYPE
  R0             3              39
  R1             2              22
  RX             0               2
D451V12, continuous
> q(save="no")
