Correlation between gene mutation status and molecular subtypes


		Clinical Features	CN CNMF	METHLYATION CNMF	MRNASEQ CNMF	MRNASEQ CHIERARCHICAL	MIRSEQ CNMF	MIRSEQ CHIERARCHICAL	MIRSEQ MATURE CNMF	MIRSEQ MATURE CHIERARCHICAL
	nMutated (%)	nWild-Type	Fisher's exact test	Fisher's exact test	Fisher's exact test	Fisher's exact test	Fisher's exact test	Fisher's exact test	Fisher's exact test	Fisher's exact test
KRAS	65 (71%)	26	0.00635 (1.00)	1.62e-05 (0.0609)	0.251 (1.00)	0.0156 (1.00)	0.0668 (1.00)	0.345 (1.00)	0.285 (1.00)	0.0534 (1.00)
ATRX	7 (8%)	84	0.169 (1.00)	0.0195 (1.00)	0.147 (1.00)	0.172 (1.00)	0.445 (1.00)	0.215 (1.00)	0.467 (1.00)	0.194 (1.00)
GRIN1	7 (8%)	84	0.3 (1.00)	0.191 (1.00)	0.0274 (1.00)	0.0646 (1.00)	0.95 (1.00)	0.768 (1.00)	0.602 (1.00)	1 (1.00)
DHX9	9 (10%)	82	0.491 (1.00)	0.237 (1.00)	0.733 (1.00)	0.0703 (1.00)	0.12 (1.00)	0.728 (1.00)	0.604 (1.00)	0.742 (1.00)
HIBCH	8 (9%)	83	0.716 (1.00)	0.456 (1.00)	1 (1.00)	1 (1.00)	0.159 (1.00)	0.705 (1.00)	1 (1.00)	1 (1.00)
AFTPH	14 (15%)	77	0.28 (1.00)	0.744 (1.00)	0.594 (1.00)	0.134 (1.00)	0.0417 (1.00)	0.395 (1.00)	0.804 (1.00)	1 (1.00)
APP	10 (11%)	81	0.0372 (1.00)	0.764 (1.00)	0.733 (1.00)	0.0359 (1.00)	0.238 (1.00)	0.728 (1.00)	0.316 (1.00)	0.318 (1.00)
TMC4	19 (21%)	72	1 (1.00)	0.417 (1.00)	0.44 (1.00)	0.162 (1.00)	0.897 (1.00)	0.112 (1.00)	0.904 (1.00)	0.297 (1.00)
KIAA0020	5 (5%)	86	0.352 (1.00)	0.849 (1.00)	0.704 (1.00)	0.395 (1.00)	0.633 (1.00)	1 (1.00)	0.71 (1.00)	1 (1.00)
BRDT	17 (19%)	74	0.00345 (1.00)	0.0134 (1.00)	0.0967 (1.00)	0.00876 (1.00)	0.0742 (1.00)	0.131 (1.00)	0.26 (1.00)	0.257 (1.00)
SETD1A	17 (19%)	74	0.881 (1.00)	0.801 (1.00)	0.683 (1.00)	0.312 (1.00)	0.822 (1.00)	0.483 (1.00)	0.826 (1.00)	0.751 (1.00)
SEH1L	17 (19%)	74	0.124 (1.00)	0.0656 (1.00)	0.0493 (1.00)	0.00876 (1.00)	0.00474 (1.00)	0.0811 (1.00)	0.0251 (1.00)	0.0949 (1.00)
IRS1	15 (16%)	76	0.694 (1.00)	0.877 (1.00)	1 (1.00)	1 (1.00)	0.686 (1.00)	0.914 (1.00)	0.874 (1.00)	1 (1.00)
PLAUR	6 (7%)	85	0.306 (1.00)	0.877 (1.00)	0.848 (1.00)	1 (1.00)	1 (1.00)	0.501 (1.00)	1 (1.00)	1 (1.00)
TERF1	6 (7%)	85	0.00978 (1.00)	0.0325 (1.00)	1 (1.00)	0.446 (1.00)	0.616 (1.00)	0.482 (1.00)	0.656 (1.00)	0.473 (1.00)
PDILT	11 (12%)	80	0.405 (1.00)	1 (1.00)	0.703 (1.00)	0.0783 (1.00)	0.834 (1.00)	0.582 (1.00)	0.92 (1.00)	0.919 (1.00)
CUX2	11 (12%)	80	0.28 (1.00)	0.721 (1.00)	0.703 (1.00)	0.137 (1.00)	0.884 (1.00)	0.839 (1.00)	1 (1.00)	0.842 (1.00)
KRT73	10 (11%)	81	0.9 (1.00)	0.694 (1.00)	0.761 (1.00)	0.15 (1.00)	0.538 (1.00)	0.745 (1.00)	1 (1.00)	1 (1.00)
TAOK2	20 (22%)	71	0.636 (1.00)	0.435 (1.00)	0.154 (1.00)	0.121 (1.00)	0.342 (1.00)	0.736 (1.00)	0.309 (1.00)	0.869 (1.00)
SORBS2	17 (19%)	74	0.189 (1.00)	0.844 (1.00)	0.248 (1.00)	0.206 (1.00)	0.753 (1.00)	0.76 (1.00)	0.79 (1.00)	0.248 (1.00)
ATG16L2	5 (5%)	86	0.423 (1.00)	0.254 (1.00)	0.134 (1.00)	0.118 (1.00)	0.335 (1.00)	0.0989 (1.00)	0.433 (1.00)	0.141 (1.00)
PTCD1	8 (9%)	83	0.591 (1.00)	0.729 (1.00)	0.626 (1.00)	0.515 (1.00)	0.779 (1.00)	0.489 (1.00)	0.637 (1.00)	0.243 (1.00)
FAM198B	6 (7%)	85	0.54 (1.00)	0.023 (1.00)	0.219 (1.00)	0.048 (1.00)	0.836 (1.00)	0.563 (1.00)	1 (1.00)	0.566 (1.00)
NDEL1	5 (5%)	86	0.504 (1.00)	0.733 (1.00)	0.000377 (1.00)	0.118 (1.00)	0.0749 (1.00)	0.0989 (1.00)	0.0224 (1.00)	0.141 (1.00)
NFIL3	11 (12%)	80	0.116 (1.00)	0.468 (1.00)	0.84 (1.00)	0.0783 (1.00)	0.414 (1.00)	0.645 (1.00)	0.647 (1.00)	1 (1.00)
ATP13A3	11 (12%)	80	0.448 (1.00)	0.721 (1.00)	0.703 (1.00)	0.587 (1.00)	1 (1.00)	0.0814 (1.00)	0.843 (1.00)	0.0663 (1.00)
IPP	17 (19%)	74	0.391 (1.00)	0.233 (1.00)	0.119 (1.00)	0.0311 (1.00)	0.326 (1.00)	0.048 (1.00)	0.222 (1.00)	0.0427 (1.00)
GAS2L2	23 (25%)	68	0.448 (1.00)	0.772 (1.00)	0.671 (1.00)	0.0795 (1.00)	0.807 (1.00)	0.237 (1.00)	0.673 (1.00)	0.658 (1.00)
XRCC2	5 (5%)	86	0.837 (1.00)	0.52 (1.00)	1 (1.00)	0.667 (1.00)	0.858 (1.00)	0.715 (1.00)	0.247 (1.00)	0.603 (1.00)
ZBTB33	6 (7%)	85	0.54 (1.00)	0.76 (1.00)	0.299 (1.00)	0.446 (1.00)	0.346 (1.00)	0.189 (1.00)	0.106 (1.00)	0.256 (1.00)
PTPRF	17 (19%)	74	0.0621 (1.00)	0.15 (1.00)	0.165 (1.00)	0.0311 (1.00)	0.204 (1.00)	0.0357 (1.00)	0.456 (1.00)	0.00811 (1.00)
UBXN6	9 (10%)	82	0.659 (1.00)	0.292 (1.00)	0.733 (1.00)	0.0359 (1.00)	0.26 (1.00)	0.582 (1.00)	0.316 (1.00)	0.388 (1.00)
MEPCE	18 (20%)	73	0.0959 (1.00)	0.111 (1.00)	0.506 (1.00)	0.0523 (1.00)	0.276 (1.00)	0.761 (1.00)	0.47 (1.00)	0.416 (1.00)
CRAT	6 (7%)	85	0.306 (1.00)	0.0999 (1.00)	0.15 (1.00)	0.0697 (1.00)	0.0803 (1.00)	0.127 (1.00)	0.132 (1.00)	0.862 (1.00)
MBD3	13 (14%)	78	0.794 (1.00)	1 (1.00)	0.241 (1.00)	0.0759 (1.00)	0.689 (1.00)	0.48 (1.00)	0.54 (1.00)	1 (1.00)
ZNF644	9 (10%)	82	0.194 (1.00)	1 (1.00)	1 (1.00)	0.0359 (1.00)	0.0656 (1.00)	0.582 (1.00)	0.0888 (1.00)	0.388 (1.00)
NAGPA	8 (9%)	83	0.636 (1.00)	0.656 (1.00)	0.208 (1.00)	0.00419 (1.00)	0.811 (1.00)	0.394 (1.00)	0.112 (1.00)	0.309 (1.00)
WWTR1	12 (13%)	79	0.335 (1.00)	0.925 (1.00)	0.61 (1.00)	0.147 (1.00)	0.373 (1.00)	0.921 (1.00)	0.924 (1.00)	0.924 (1.00)
B4GALT2	10 (11%)	81	0.337 (1.00)	0.247 (1.00)	0.18 (1.00)	0.39 (1.00)	0.157 (1.00)	0.68 (1.00)	0.231 (1.00)	0.309 (1.00)
SGOL2	11 (12%)	80	0.28 (1.00)	0.721 (1.00)	0.497 (1.00)	0.137 (1.00)	0.375 (1.00)	0.169 (1.00)	0.22 (1.00)	0.125 (1.00)
EDC4	18 (20%)	73	0.887 (1.00)	0.793 (1.00)	0.9 (1.00)	0.281 (1.00)	0.683 (1.00)	0.912 (1.00)	0.877 (1.00)	0.594 (1.00)
RAB11FIP5	8 (9%)	83	1 (1.00)	0.409 (1.00)	0.182 (1.00)	0.515 (1.00)	0.637 (1.00)	0.705 (1.00)	0.895 (1.00)	1 (1.00)
DHRS7B	5 (5%)	86	1 (1.00)	1 (1.00)	0.596 (1.00)	0.667 (1.00)	0.927 (1.00)	0.715 (1.00)	0.852 (1.00)	0.603 (1.00)
PAK1	7 (8%)	84	1 (1.00)	0.888 (1.00)	1 (1.00)	1 (1.00)	0.9 (1.00)	0.593 (1.00)	0.885 (1.00)	1 (1.00)
FYN	8 (9%)	83	0.43 (1.00)	0.409 (1.00)	0.16 (1.00)	0.224 (1.00)	0.327 (1.00)	0.308 (1.00)	0.4 (1.00)	0.399 (1.00)
TMCO1	12 (13%)	79	0.72 (1.00)	0.925 (1.00)	0.779 (1.00)	0.185 (1.00)	0.0743 (1.00)	1 (1.00)	0.52 (1.00)	0.924 (1.00)
NPNT	10 (11%)	81	0.56 (1.00)	0.764 (1.00)	0.0395 (1.00)	1 (1.00)	0.345 (1.00)	0.128 (1.00)	0.626 (1.00)	0.211 (1.00)
ERF	16 (18%)	75	0.767 (1.00)	0.591 (1.00)	0.867 (1.00)	0.0526 (1.00)	0.527 (1.00)	0.86 (1.00)	0.3 (1.00)	0.536 (1.00)
SLC24A1	9 (10%)	82	0.3 (1.00)	0.263 (1.00)	0.66 (1.00)	0.00626 (1.00)	0.0245 (1.00)	0.341 (1.00)	0.0984 (1.00)	0.254 (1.00)
TULP1	9 (10%)	82	0.122 (1.00)	0.614 (1.00)	0.0635 (1.00)	0.172 (1.00)	0.319 (1.00)	0.148 (1.00)	0.204 (1.00)	0.285 (1.00)
BMP2K	14 (15%)	77	0.284 (1.00)	0.693 (1.00)	0.259 (1.00)	0.0581 (1.00)	0.366 (1.00)	0.159 (1.00)	0.932 (1.00)	0.655 (1.00)
FADS2	13 (14%)	78	0.308 (1.00)	0.866 (1.00)	0.00072 (1.00)	0.0869 (1.00)	0.101 (1.00)	0.131 (1.00)	0.0274 (1.00)	0.241 (1.00)
SMG7	8 (9%)	83	0.889 (1.00)	1 (1.00)	0.712 (1.00)	0.11 (1.00)	0.95 (1.00)	1 (1.00)	0.507 (1.00)	0.802 (1.00)
SLC39A5	11 (12%)	80	0.253 (1.00)	0.214 (1.00)	0.332 (1.00)	0.21 (1.00)	0.00397 (1.00)	0.401 (1.00)	0.313 (1.00)	0.101 (1.00)
MYH10	21 (23%)	70	0.0494 (1.00)	0.0522 (1.00)	0.107 (1.00)	0.00857 (1.00)	0.624 (1.00)	0.0238 (1.00)	0.119 (1.00)	0.191 (1.00)
WASF3	17 (19%)	74	0.229 (1.00)	1 (1.00)	0.285 (1.00)	0.474 (1.00)	0.506 (1.00)	0.697 (1.00)	1 (1.00)	0.679 (1.00)
GPR25	12 (13%)	79	0.471 (1.00)	0.331 (1.00)	0.662 (1.00)	0.068 (1.00)	0.0335 (1.00)	0.592 (1.00)	0.782 (1.00)	0.373 (1.00)
NFAT5	20 (22%)	71	0.547 (1.00)	0.769 (1.00)	0.154 (1.00)	0.223 (1.00)	1 (1.00)	0.809 (1.00)	0.819 (1.00)	0.869 (1.00)
FGF10	14 (15%)	77	0.856 (1.00)	0.154 (1.00)	0.259 (1.00)	0.395 (1.00)	0.332 (1.00)	0.63 (1.00)	0.193 (1.00)	0.362 (1.00)
C19ORF55	18 (20%)	73	0.162 (1.00)	0.0804 (1.00)	0.611 (1.00)	0.0935 (1.00)	0.756 (1.00)	0.697 (1.00)	0.726 (1.00)	0.679 (1.00)
SLC4A3	12 (13%)	79	0.85 (1.00)	0.228 (1.00)	0.61 (1.00)	0.147 (1.00)	0.695 (1.00)	1 (1.00)	0.924 (1.00)	0.924 (1.00)
CEL	9 (10%)	82	0.194 (1.00)	1 (1.00)	0.00302 (1.00)	0.36 (1.00)	0.642 (1.00)	0.424 (1.00)	0.284 (1.00)	0.673 (1.00)
APOBEC4	9 (10%)	82	0.425 (1.00)	0.908 (1.00)	0.541 (1.00)	0.529 (1.00)	1 (1.00)	0.471 (1.00)	0.901 (1.00)	0.473 (1.00)
MED15	24 (26%)	67	0.619 (1.00)	0.195 (1.00)	0.124 (1.00)	0.112 (1.00)	0.408 (1.00)	0.949 (1.00)	0.6 (1.00)	0.802 (1.00)
MAML3	13 (14%)	78	0.678 (1.00)	0.698 (1.00)	0.494 (1.00)	0.0759 (1.00)	0.533 (1.00)	0.875 (1.00)	0.54 (1.00)	0.862 (1.00)
SULT1C3	6 (7%)	85	0.747 (1.00)	0.435 (1.00)	0.755 (1.00)	1 (1.00)	0.189 (1.00)	1 (1.00)	1 (1.00)	1 (1.00)
CCR3	9 (10%)	82	1 (1.00)	0.505 (1.00)	0.733 (1.00)	0.751 (1.00)	0.377 (1.00)	0.813 (1.00)	1 (1.00)	1 (1.00)
CLCC1	5 (5%)	86	0.0726 (1.00)	0.0122 (1.00)	0.426 (1.00)	0.118 (1.00)	0.0924 (1.00)	0.501 (1.00)	0.0504 (1.00)	0.0492 (1.00)
PABPC1	15 (16%)	76	0.813 (1.00)	0.35 (1.00)	0.247 (1.00)	1 (1.00)	0.117 (1.00)	0.457 (1.00)	0.266 (1.00)	0.315 (1.00)
CCDC103	6 (7%)	85	0.259 (1.00)	0.877 (1.00)	0.345 (1.00)	0.69 (1.00)	0.651 (1.00)	1 (1.00)	0.561 (1.00)	1 (1.00)
CHGA	12 (13%)	79	0.0648 (1.00)	1 (1.00)	0.924 (1.00)	0.185 (1.00)	0.0435 (1.00)	0.592 (1.00)	0.319 (1.00)	0.373 (1.00)
KDM2A	11 (12%)	80	0.206 (1.00)	0.0623 (1.00)	0.254 (1.00)	0.137 (1.00)	0.487 (1.00)	0.708 (1.00)	0.28 (1.00)	0.418 (1.00)
OLIG3	12 (13%)	79	0.335 (1.00)	0.925 (1.00)	0.124 (1.00)	0.013 (1.00)	0.124 (1.00)	0.0857 (1.00)	0.671 (1.00)	0.34 (1.00)
FOXP2	20 (22%)	71	0.415 (1.00)	0.576 (1.00)	0.156 (1.00)	0.17 (1.00)	0.545 (1.00)	0.684 (1.00)	0.475 (1.00)	0.572 (1.00)
MAGEA10	13 (14%)	78	0.678 (1.00)	0.866 (1.00)	0.925 (1.00)	0.611 (1.00)	0.689 (1.00)	0.875 (1.00)	0.805 (1.00)	0.684 (1.00)
EGR1	16 (18%)	75	0.821 (1.00)	0.905 (1.00)	0.867 (1.00)	0.26 (1.00)	0.57 (1.00)	0.557 (1.00)	0.657 (1.00)	0.938 (1.00)
PRDM8	23 (25%)	68	0.565 (1.00)	0.274 (1.00)	0.821 (1.00)	0.164 (1.00)	0.00997 (1.00)	0.431 (1.00)	0.285 (1.00)	0.153 (1.00)
PIAS4	3 (3%)	88	0.605 (1.00)	0.266 (1.00)	0.795 (1.00)	0.0357 (1.00)	0.164 (1.00)	0.217 (1.00)	1 (1.00)	0.228 (1.00)
TEX2	12 (13%)	79	0.399 (1.00)	0.683 (1.00)	0.52 (1.00)	0.068 (1.00)	0.971 (1.00)	0.246 (1.00)	0.616 (1.00)	0.563 (1.00)
ARHGAP18	10 (11%)	81	0.194 (1.00)	0.764 (1.00)	0.0981 (1.00)	0.264 (1.00)	0.444 (1.00)	0.364 (1.00)	0.467 (1.00)	0.421 (1.00)
TMEM175	14 (15%)	77	0.48 (1.00)	0.314 (1.00)	0.136 (1.00)	0.227 (1.00)	0.131 (1.00)	0.0306 (1.00)	0.295 (1.00)	0.021 (1.00)
CDKN2A	21 (23%)	70	0.0117 (1.00)	0.00458 (1.00)	0.0693 (1.00)	0.124 (1.00)	0.0884 (1.00)	0.173 (1.00)	0.00829 (1.00)	0.0845 (1.00)
CBR3	5 (5%)	86	0.135 (1.00)	0.0197 (1.00)	0.245 (1.00)	0.202 (1.00)	0.551 (1.00)	0.267 (1.00)	0.597 (1.00)	0.187 (1.00)
TOX4	9 (10%)	82	0.0815 (1.00)	0.101 (1.00)	0.733 (1.00)	0.0703 (1.00)	0.268 (1.00)	0.525 (1.00)	0.604 (1.00)	0.538 (1.00)
OR10A2	15 (16%)	76	0.87 (1.00)	0.124 (1.00)	0.872 (1.00)	0.308 (1.00)	0.673 (1.00)	1 (1.00)	0.936 (1.00)	1 (1.00)
OR10A7	30 (33%)	61	0.379 (1.00)	0.166 (1.00)	0.596 (1.00)	0.796 (1.00)	0.334 (1.00)	0.571 (1.00)	0.918 (1.00)	0.451 (1.00)
FAM63B	10 (11%)	81	1 (1.00)	0.586 (1.00)	1 (1.00)	0.15 (1.00)	0.633 (1.00)	0.745 (1.00)	0.91 (1.00)	0.421 (1.00)
RNF168	8 (9%)	83	0.797 (1.00)	0.586 (1.00)	0.892 (1.00)	0.0429 (1.00)	0.154 (1.00)	0.795 (1.00)	0.451 (1.00)	0.565 (1.00)
POP5	12 (13%)	79	0.85 (1.00)	0.738 (1.00)	0.851 (1.00)	0.443 (1.00)	0.766 (1.00)	0.269 (1.00)	0.319 (1.00)	0.782 (1.00)
NF2	5 (5%)	86	0.103 (1.00)	0.304 (1.00)	0.596 (1.00)	0.065 (1.00)	0.102 (1.00)	0.598 (1.00)	0.147 (1.00)	0.365 (1.00)
RIOK1	14 (15%)	77	0.556 (1.00)	0.154 (1.00)	0.0336 (1.00)	0.0581 (1.00)	0.242 (1.00)	0.25 (1.00)	0.11 (1.00)	0.476 (1.00)
OR6C65	6 (7%)	85	0.747 (1.00)	0.877 (1.00)	0.651 (1.00)	0.248 (1.00)	0.0332 (1.00)	0.284 (1.00)	0.865 (1.00)	0.348 (1.00)
ZBTB24	5 (5%)	86	0.448 (1.00)	0.365 (1.00)	0.0402 (1.00)	0.395 (1.00)	0.633 (1.00)	0.501 (1.00)	0.509 (1.00)	1 (1.00)
SYT15	13 (14%)	78	0.221 (1.00)	0.585 (1.00)	0.925 (1.00)	0.171 (1.00)	0.703 (1.00)	1 (1.00)	0.69 (1.00)	0.862 (1.00)
SLC22A9	12 (13%)	79	0.471 (1.00)	0.331 (1.00)	0.401 (1.00)	1 (1.00)	0.894 (1.00)	0.46 (1.00)	0.671 (1.00)	0.721 (1.00)
SRP14	18 (20%)	73	0.941 (1.00)	1 (1.00)	0.232 (1.00)	0.497 (1.00)	0.44 (1.00)	0.397 (1.00)	0.258 (1.00)	0.163 (1.00)
DIAPH3	14 (15%)	77	0.643 (1.00)	0.474 (1.00)	0.283 (1.00)	0.0581 (1.00)	0.0286 (1.00)	0.579 (1.00)	0.932 (1.00)	0.932 (1.00)
WRN	13 (14%)	78	0.0656 (1.00)	0.124 (1.00)	0.427 (1.00)	0.34 (1.00)	0.949 (1.00)	0.875 (1.00)	0.805 (1.00)	0.925 (1.00)
PDZD2	18 (20%)	73	0.163 (1.00)	1 (1.00)	0.151 (1.00)	0.0171 (1.00)	0.276 (1.00)	0.0871 (1.00)	0.0354 (1.00)	0.155 (1.00)
AARS2	11 (12%)	80	0.116 (1.00)	0.555 (1.00)	0.305 (1.00)	0.0357 (1.00)	0.498 (1.00)	0.401 (1.00)	0.347 (1.00)	0.277 (1.00)
SHPRH	12 (13%)	79	0.85 (1.00)	0.795 (1.00)	0.236 (1.00)	0.068 (1.00)	0.2 (1.00)	0.0965 (1.00)	0.0942 (1.00)	0.13 (1.00)
ZNF337	12 (13%)	79	0.434 (1.00)	0.577 (1.00)	0.779 (1.00)	0.185 (1.00)	0.766 (1.00)	0.776 (1.00)	1 (1.00)	0.481 (1.00)
NGEF	6 (7%)	85	0.0836 (1.00)	0.76 (1.00)	0.861 (1.00)	1 (1.00)	0.616 (1.00)	0.563 (1.00)	0.656 (1.00)	0.566 (1.00)
BCL2L1	7 (8%)	84	1 (1.00)	1 (1.00)	0.885 (1.00)	1 (1.00)	0.279 (1.00)	0.877 (1.00)	0.779 (1.00)	0.888 (1.00)
RBM15B	10 (11%)	81	0.827 (1.00)	0.639 (1.00)	0.0519 (1.00)	0.768 (1.00)	0.497 (1.00)	0.452 (1.00)	0.314 (1.00)	0.252 (1.00)
THBS4	21 (23%)	70	0.203 (1.00)	0.352 (1.00)	0.517 (1.00)	0.0295 (1.00)	0.454 (1.00)	0.471 (1.00)	0.407 (1.00)	0.141 (1.00)
PVRL1	12 (13%)	79	0.0707 (1.00)	0.122 (1.00)	0.278 (1.00)	0.0029 (1.00)	0.052 (1.00)	0.337 (1.00)	0.203 (1.00)	0.219 (1.00)
PVRL2	11 (12%)	80	1 (1.00)	0.849 (1.00)	0.703 (1.00)	0.0783 (1.00)	0.858 (1.00)	0.645 (1.00)	0.77 (1.00)	0.768 (1.00)
TNNI3K	13 (14%)	78	0.856 (1.00)	0.334 (1.00)	0.494 (1.00)	0.171 (1.00)	0.903 (1.00)	0.875 (1.00)	0.805 (1.00)	1 (1.00)
NEDD4L	11 (12%)	80	0.405 (1.00)	0.507 (1.00)	0.542 (1.00)	0.0783 (1.00)	0.0472 (1.00)	0.0815 (1.00)	0.313 (1.00)	0.0363 (1.00)
IRX4	14 (15%)	77	0.0895 (1.00)	0.57 (1.00)	0.647 (1.00)	0.395 (1.00)	0.317 (1.00)	0.735 (1.00)	0.608 (1.00)	0.932 (1.00)
GTF3C3	6 (7%)	85	0.868 (1.00)	0.163 (1.00)	0.258 (1.00)	1 (1.00)	0.498 (1.00)	0.74 (1.00)	0.307 (1.00)	0.862 (1.00)
NAP1L3	6 (7%)	85	0.473 (1.00)	0.322 (1.00)	0.755 (1.00)	0.69 (1.00)	0.472 (1.00)	0.858 (1.00)	0.758 (1.00)	1 (1.00)
TMEM40	16 (18%)	75	0.374 (1.00)	0.327 (1.00)	0.329 (1.00)	0.614 (1.00)	0.148 (1.00)	0.684 (1.00)	0.428 (1.00)	0.76 (1.00)
MED9	17 (19%)	74	0.59 (1.00)	0.546 (1.00)	0.683 (1.00)	0.168 (1.00)	0.0919 (1.00)	0.877 (1.00)	0.456 (1.00)	0.915 (1.00)
ZNF608	14 (15%)	77	0.0699 (1.00)	0.521 (1.00)	0.445 (1.00)	0.0581 (1.00)	0.62 (1.00)	0.371 (1.00)	0.413 (1.00)	0.301 (1.00)
DPAGT1	5 (5%)	86	0.837 (1.00)	0.849 (1.00)	0.359 (1.00)	1 (1.00)	0.633 (1.00)	0.598 (1.00)	0.111 (1.00)	0.365 (1.00)
IFNGR2	13 (14%)	78	0.261 (1.00)	0.746 (1.00)	0.925 (1.00)	0.796 (1.00)	0.563 (1.00)	0.723 (1.00)	0.865 (1.00)	0.801 (1.00)
PPARGC1B	15 (16%)	76	0.139 (1.00)	0.43 (1.00)	0.528 (1.00)	0.0307 (1.00)	0.515 (1.00)	0.539 (1.00)	0.328 (1.00)	0.617 (1.00)
DHX57	20 (22%)	71	0.416 (1.00)	0.0222 (1.00)	0.813 (1.00)	0.121 (1.00)	0.294 (1.00)	0.688 (1.00)	0.148 (1.00)	0.389 (1.00)
TDRD6	12 (13%)	79	1 (1.00)	1 (1.00)	0.278 (1.00)	0.068 (1.00)	0.649 (1.00)	0.246 (1.00)	0.374 (1.00)	0.563 (1.00)
CIR1	16 (18%)	75	0.717 (1.00)	0.905 (1.00)	0.628 (1.00)	0.115 (1.00)	0.94 (1.00)	0.88 (1.00)	0.61 (1.00)	0.938 (1.00)
ZMYM5	10 (11%)	81	0.0777 (1.00)	0.639 (1.00)	0.458 (1.00)	0.15 (1.00)	0.65 (1.00)	0.68 (1.00)	0.314 (1.00)	0.571 (1.00)
TMEM184A	18 (20%)	73	0.787 (1.00)	0.488 (1.00)	0.658 (1.00)	0.298 (1.00)	0.981 (1.00)	0.567 (1.00)	0.904 (1.00)	0.722 (1.00)
BHLHB9	10 (11%)	81	0.000893 (1.00)	0.00301 (1.00)	0.0342 (1.00)	0.191 (1.00)	0.183 (1.00)	0.00525 (1.00)	0.115 (1.00)	0.00659 (1.00)
MAP3K7	9 (10%)	82	0.592 (1.00)	0.743 (1.00)	1 (1.00)	0.0703 (1.00)	0.47 (1.00)	0.341 (1.00)	0.228 (1.00)	0.254 (1.00)
EME2	10 (11%)	81	0.3 (1.00)	0.149 (1.00)	0.502 (1.00)	0.0186 (1.00)	0.116 (1.00)	0.227 (1.00)	0.19 (1.00)	0.515 (1.00)
TP53	59 (65%)	32	0.0122 (1.00)	0.00487 (1.00)	1 (1.00)	0.0891 (1.00)	0.21 (1.00)	0.83 (1.00)	0.371 (1.00)	0.237 (1.00)
ALS2CR11	15 (16%)	76	0.134 (1.00)	0.43 (1.00)	0.387 (1.00)	0.0307 (1.00)	0.211 (1.00)	0.261 (1.00)	0.285 (1.00)	0.283 (1.00)
SALL1	13 (14%)	78	0.0713 (1.00)	0.233 (1.00)	1 (1.00)	0.147 (1.00)	0.649 (1.00)	0.592 (1.00)	0.616 (1.00)	0.665 (1.00)
ZMIZ1	17 (19%)	74	0.778 (1.00)	0.939 (1.00)	0.447 (1.00)	0.281 (1.00)	0.284 (1.00)	0.697 (1.00)	0.549 (1.00)	0.751 (1.00)
ESCO2	8 (9%)	83	0.302 (1.00)	0.141 (1.00)	0.495 (1.00)	0.515 (1.00)	0.718 (1.00)	0.232 (1.00)	1 (1.00)	0.565 (1.00)
CTRL	7 (8%)	84	0.26 (1.00)	1 (1.00)	0.678 (1.00)	0.0646 (1.00)	0.39 (1.00)	0.768 (1.00)	0.885 (1.00)	1 (1.00)
OTUD4	24 (26%)	67	0.943 (1.00)	0.414 (1.00)	0.0595 (1.00)	0.22 (1.00)	0.932 (1.00)	0.514 (1.00)	0.6 (1.00)	0.35 (1.00)
QRICH1	15 (16%)	76	0.259 (1.00)	0.338 (1.00)	0.147 (1.00)	0.0823 (1.00)	0.124 (1.00)	0.0213 (1.00)	0.0118 (1.00)	0.0729 (1.00)
RAD17	4 (4%)	87	1 (1.00)	0.369 (1.00)	0.441 (1.00)	1 (1.00)	0.238 (1.00)	0.243 (1.00)	0.683 (1.00)	0.262 (1.00)
COTL1	8 (9%)	83	0.0999 (1.00)	0.0726 (1.00)	0.0915 (1.00)	0.027 (1.00)	0.0909 (1.00)	0.0152 (1.00)	0.451 (1.00)	0.0245 (1.00)
CDH3	9 (10%)	82	0.534 (1.00)	0.101 (1.00)	0.235 (1.00)	0.11 (1.00)	0.378 (1.00)	0.232 (1.00)	0.0367 (1.00)	0.124 (1.00)
ECSIT	6 (7%)	85	1 (1.00)	1 (1.00)	0.00236 (1.00)	0.248 (1.00)	0.385 (1.00)	0.156 (1.00)	0.16 (1.00)	0.301 (1.00)
PHF14	7 (8%)	84	0.345 (1.00)	0.694 (1.00)	0.523 (1.00)	0.0249 (1.00)	0.445 (1.00)	0.593 (1.00)	0.202 (1.00)	0.414 (1.00)
PHF13	14 (15%)	77	1 (1.00)	0.479 (1.00)	0.806 (1.00)	0.66 (1.00)	0.632 (1.00)	0.395 (1.00)	1 (1.00)	0.52 (1.00)
SLC6A9	8 (9%)	83	0.674 (1.00)	0.0824 (1.00)	0.801 (1.00)	0.515 (1.00)	0.294 (1.00)	0.795 (1.00)	1 (1.00)	0.565 (1.00)
STK19	5 (5%)	86	1 (1.00)	0.733 (1.00)	0.704 (1.00)	1 (1.00)	0.31 (1.00)	0.414 (1.00)	1 (1.00)	0.708 (1.00)
PANK2	10 (11%)	81	0.678 (1.00)	0.586 (1.00)	1 (1.00)	0.0437 (1.00)	0.407 (1.00)	1 (1.00)	0.831 (1.00)	0.909 (1.00)
ST6GALNAC5	16 (18%)	75	0.143 (1.00)	0.346 (1.00)	0.583 (1.00)	0.26 (1.00)	0.482 (1.00)	0.88 (1.00)	0.71 (1.00)	1 (1.00)
PTPLAD2	5 (5%)	86	0.837 (1.00)	0.622 (1.00)	0.102 (1.00)	0.0428 (1.00)	0.679 (1.00)	1 (1.00)	0.509 (1.00)	1 (1.00)
TNFSF9	19 (21%)	72	0.775 (1.00)	0.855 (1.00)	0.641 (1.00)	0.315 (1.00)	0.919 (1.00)	0.442 (1.00)	0.47 (1.00)	0.313 (1.00)
OTOF	19 (21%)	72	0.216 (1.00)	0.677 (1.00)	1 (1.00)	0.219 (1.00)	0.946 (1.00)	0.903 (1.00)	0.0864 (1.00)	0.722 (1.00)
ABCC2	14 (15%)	77	0.929 (1.00)	0.474 (1.00)	0.738 (1.00)	0.0759 (1.00)	0.278 (1.00)	0.875 (1.00)	0.468 (1.00)	0.925 (1.00)
MST1	15 (16%)	76	0.87 (1.00)	0.509 (1.00)	0.147 (1.00)	0.0587 (1.00)	0.0192 (1.00)	0.0383 (1.00)	0.082 (1.00)	0.056 (1.00)
SCD	9 (10%)	82	0.659 (1.00)	0.237 (1.00)	0.0081 (1.00)	0.0359 (1.00)	0.12 (1.00)	0.525 (1.00)	0.0622 (1.00)	0.538 (1.00)
FOXJ2	11 (12%)	80	0.466 (1.00)	0.555 (1.00)	0.919 (1.00)	0.0357 (1.00)	0.207 (1.00)	0.911 (1.00)	0.202 (1.00)	0.344 (1.00)
CCDC28B	16 (18%)	75	0.767 (1.00)	0.591 (1.00)	0.329 (1.00)	0.614 (1.00)	0.496 (1.00)	0.438 (1.00)	0.79 (1.00)	0.675 (1.00)
AJAP1	14 (15%)	77	1 (1.00)	0.628 (1.00)	0.413 (1.00)	0.134 (1.00)	0.71 (1.00)	1 (1.00)	0.337 (1.00)	1 (1.00)
CXXC4	13 (14%)	78	0.783 (1.00)	0.585 (1.00)	0.199 (1.00)	0.102 (1.00)	0.563 (1.00)	0.661 (1.00)	0.372 (1.00)	0.174 (1.00)
NAPSA	9 (10%)	82	0.158 (1.00)	0.409 (1.00)	1 (1.00)	0.138 (1.00)	0.407 (1.00)	0.891 (1.00)	0.637 (1.00)	0.898 (1.00)
SMAD4	17 (19%)	74	0.122 (1.00)	0.0246 (1.00)	0.0258 (1.00)	0.00178 (1.00)	0.0613 (1.00)	0.0632 (1.00)	0.00323 (1.00)	0.0322 (1.00)
DDX55	19 (21%)	72	0.465 (1.00)	0.663 (1.00)	0.0632 (1.00)	0.0819 (1.00)	0.135 (1.00)	0.684 (1.00)	0.801 (1.00)	0.905 (1.00)
TMEM41A	8 (9%)	83	0.889 (1.00)	0.367 (1.00)	0.441 (1.00)	0.0429 (1.00)	1 (1.00)	0.441 (1.00)	0.895 (1.00)	0.631 (1.00)
CYP20A1	9 (10%)	82	0.0445 (1.00)	0.292 (1.00)	0.251 (1.00)	0.0703 (1.00)	0.542 (1.00)	0.304 (1.00)	0.316 (1.00)	0.182 (1.00)
SLC34A2	10 (11%)	81	0.748 (1.00)	0.837 (1.00)	0.136 (1.00)	0.0872 (1.00)	0.899 (1.00)	0.145 (1.00)	0.314 (1.00)	0.125 (1.00)
ZNF207	8 (9%)	83	0.186 (1.00)	0.329 (1.00)	0.626 (1.00)	0.0125 (1.00)	0.294 (1.00)	0.308 (1.00)	0.4 (1.00)	0.399 (1.00)
SLITRK5	11 (12%)	80	0.538 (1.00)	0.134 (1.00)	0.497 (1.00)	0.0783 (1.00)	0.745 (1.00)	0.645 (1.00)	0.313 (1.00)	0.768 (1.00)
MMRN1	12 (13%)	79	0.511 (1.00)	0.495 (1.00)	0.84 (1.00)	0.137 (1.00)	1 (1.00)	0.771 (1.00)	0.503 (1.00)	0.595 (1.00)
MAP7D3	11 (12%)	80	1 (1.00)	0.92 (1.00)	0.231 (1.00)	0.0783 (1.00)	0.745 (1.00)	0.645 (1.00)	0.313 (1.00)	0.768 (1.00)
BTNL8	11 (12%)	80	0.538 (1.00)	0.555 (1.00)	0.84 (1.00)	0.0783 (1.00)	1 (1.00)	0.401 (1.00)	0.77 (1.00)	0.7 (1.00)
SERTAD1	7 (8%)	84	0.3 (1.00)	0.789 (1.00)	0.455 (1.00)	0.0646 (1.00)	0.49 (1.00)	0.672 (1.00)	0.602 (1.00)	1 (1.00)
SYT2	9 (10%)	82	0.592 (1.00)	0.263 (1.00)	0.277 (1.00)	0.172 (1.00)	0.47 (1.00)	0.341 (1.00)	0.817 (1.00)	0.742 (1.00)
ZFP36	8 (9%)	83	0.186 (1.00)	0.0401 (1.00)	0.0491 (1.00)	0.0826 (1.00)	0.0212 (1.00)	0.125 (1.00)	0.127 (1.00)	0.0933 (1.00)
UHRF1BP1	11 (12%)	80	0.587 (1.00)	1 (1.00)	0.919 (1.00)	0.0357 (1.00)	0.0263 (1.00)	0.441 (1.00)	0.313 (1.00)	0.344 (1.00)
TTK	9 (10%)	82	0.659 (1.00)	0.743 (1.00)	0.902 (1.00)	0.128 (1.00)	0.622 (1.00)	1 (1.00)	0.672 (1.00)	1 (1.00)
CCDC135	9 (10%)	82	0.9 (1.00)	0.33 (1.00)	0.902 (1.00)	0.128 (1.00)	0.729 (1.00)	1 (1.00)	0.817 (1.00)	1 (1.00)
TNFRSF9	6 (7%)	85	0.868 (1.00)	0.497 (1.00)	0.0502 (1.00)	0.248 (1.00)	0.119 (1.00)	0.74 (1.00)	0.307 (1.00)	0.862 (1.00)
UBL4A	5 (5%)	86	0.837 (1.00)	1 (1.00)	0.188 (1.00)	1 (1.00)	0.858 (1.00)	0.839 (1.00)	0.852 (1.00)	0.848 (1.00)
PURB	6 (7%)	85	0.868 (1.00)	0.232 (1.00)	1 (1.00)	1 (1.00)	0.498 (1.00)	0.649 (1.00)	0.758 (1.00)	0.409 (1.00)
GABBR1	10 (11%)	81	0.512 (1.00)	0.917 (1.00)	0.221 (1.00)	0.117 (1.00)	0.706 (1.00)	1 (1.00)	0.349 (1.00)	1 (1.00)
ADAM30	9 (10%)	82	0.0613 (1.00)	0.614 (1.00)	1 (1.00)	0.751 (1.00)	0.664 (1.00)	1 (1.00)	0.479 (1.00)	0.9 (1.00)
NR4A3	7 (8%)	84	1 (1.00)	0.0384 (1.00)	0.592 (1.00)	0.0426 (1.00)	0.854 (1.00)	0.877 (1.00)	0.682 (1.00)	0.888 (1.00)
MAMSTR	5 (5%)	86	0.224 (1.00)	0.622 (1.00)	0.018 (1.00)	1 (1.00)	0.0251 (1.00)	0.201 (1.00)	0.0344 (1.00)	0.087 (1.00)
ZC3H7B	9 (10%)	82	0.158 (1.00)	0.263 (1.00)	1 (1.00)	0.0703 (1.00)	0.268 (1.00)	0.728 (1.00)	0.0545 (1.00)	0.0525 (1.00)
IFFO1	8 (9%)	83	0.558 (1.00)	0.262 (1.00)	0.121 (1.00)	0.11 (1.00)	0.422 (1.00)	0.27 (1.00)	0.712 (1.00)	0.5 (1.00)
C6ORF165	8 (9%)	83	0.27 (1.00)	0.456 (1.00)	0.348 (1.00)	0.00112 (1.00)	0.115 (1.00)	0.125 (1.00)	0.0743 (1.00)	0.0933 (1.00)
RBM33	9 (10%)	82	0.194 (1.00)	0.908 (1.00)	0.0713 (1.00)	0.0359 (1.00)	0.205 (1.00)	0.148 (1.00)	0.204 (1.00)	0.285 (1.00)
OSBPL1A	9 (10%)	82	0.733 (1.00)	0.237 (1.00)	0.902 (1.00)	0.0703 (1.00)	0.884 (1.00)	1 (1.00)	0.672 (1.00)	1 (1.00)
PPP1R10	11 (12%)	80	0.338 (1.00)	0.0702 (1.00)	0.0106 (1.00)	0.21 (1.00)	0.16 (1.00)	0.106 (1.00)	0.102 (1.00)	0.308 (1.00)
TIMM50	8 (9%)	83	0.889 (1.00)	0.895 (1.00)	0.801 (1.00)	0.138 (1.00)	0.378 (1.00)	0.795 (1.00)	0.637 (1.00)	0.565 (1.00)
TMED10	6 (7%)	85	0.868 (1.00)	0.435 (1.00)	1 (1.00)	0.048 (1.00)	0.688 (1.00)	0.858 (1.00)	0.758 (1.00)	0.758 (1.00)
YIPF2	8 (9%)	83	0.797 (1.00)	1 (1.00)	0.892 (1.00)	0.138 (1.00)	0.527 (1.00)	0.795 (1.00)	0.712 (1.00)	0.565 (1.00)
TSC22D1	10 (11%)	81	0.81 (1.00)	0.335 (1.00)	0.832 (1.00)	0.15 (1.00)	0.585 (1.00)	0.364 (1.00)	0.755 (1.00)	0.421 (1.00)
ARFGAP3	7 (8%)	84	0.884 (1.00)	0.616 (1.00)	0.455 (1.00)	1 (1.00)	0.811 (1.00)	0.768 (1.00)	0.355 (1.00)	0.362 (1.00)
CRYGA	4 (4%)	87	1 (1.00)	1 (1.00)	1 (1.00)	1 (1.00)	0.675 (1.00)	1 (1.00)	1 (1.00)	1 (1.00)
PUM2	8 (9%)	83	0.27 (1.00)	0.895 (1.00)	0.16 (1.00)	0.0125 (1.00)	0.294 (1.00)	0.308 (1.00)	0.127 (1.00)	0.399 (1.00)
YTHDF1	8 (9%)	83	1 (1.00)	1 (1.00)	0.182 (1.00)	0.515 (1.00)	0.509 (1.00)	0.176 (1.00)	0.565 (1.00)	0.353 (1.00)
PLAU	7 (8%)	84	0.0506 (1.00)	0.0195 (1.00)	0.262 (1.00)	0.0249 (1.00)	0.0237 (1.00)	0.129 (1.00)	0.00284 (1.00)	0.018 (1.00)
SOS1	11 (12%)	80	0.909 (1.00)	0.781 (1.00)	0.906 (1.00)	0.0437 (1.00)	0.373 (1.00)	0.502 (1.00)	0.91 (1.00)	0.515 (1.00)
DPYS	8 (9%)	83	1 (1.00)	0.233 (1.00)	1 (1.00)	0.0429 (1.00)	0.718 (1.00)	0.891 (1.00)	0.637 (1.00)	0.898 (1.00)
CPLX3	4 (4%)	87	0.176 (1.00)	0.243 (1.00)	0.0639 (1.00)	0.185 (1.00)	0.00627 (1.00)	0.037 (1.00)	0.00251 (1.00)	0.0111 (1.00)
RUNX2	11 (12%)	80	0.338 (1.00)	0.157 (1.00)	0.763 (1.00)	0.0783 (1.00)	0.16 (1.00)	0.441 (1.00)	0.313 (1.00)	0.344 (1.00)
BCL7C	4 (4%)	87	0.805 (1.00)	0.448 (1.00)	0.68 (1.00)	0.645 (1.00)	0.742 (1.00)	0.829 (1.00)	0.353 (1.00)	0.682 (1.00)
RGS22	11 (12%)	80	0.838 (1.00)	0.507 (1.00)	0.305 (1.00)	0.405 (1.00)	0.282 (1.00)	0.911 (1.00)	0.647 (1.00)	0.7 (1.00)
ERCC3	8 (9%)	83	0.716 (1.00)	0.409 (1.00)	0.626 (1.00)	0.138 (1.00)	0.327 (1.00)	1 (1.00)	0.353 (1.00)	0.802 (1.00)
SYNCRIP	8 (9%)	83	0.797 (1.00)	1 (1.00)	0.39 (1.00)	0.11 (1.00)	0.95 (1.00)	0.621 (1.00)	0.712 (1.00)	0.707 (1.00)
AHDC1	8 (9%)	83	0.27 (1.00)	0.456 (1.00)	0.626 (1.00)	0.0125 (1.00)	0.392 (1.00)	0.308 (1.00)	0.895 (1.00)	0.399 (1.00)
CLOCK	9 (10%)	82	0.479 (1.00)	0.409 (1.00)	1 (1.00)	0.138 (1.00)	0.779 (1.00)	1 (1.00)	0.4 (1.00)	0.802 (1.00)
LRIG1	11 (12%)	80	0.492 (1.00)	0.92 (1.00)	0.919 (1.00)	0.0783 (1.00)	0.745 (1.00)	0.911 (1.00)	0.313 (1.00)	0.7 (1.00)
SEPT10	7 (8%)	84	0.26 (1.00)	0.103 (1.00)	0.885 (1.00)	0.0249 (1.00)	0.0505 (1.00)	0.672 (1.00)	0.602 (1.00)	0.169 (1.00)
BRD9	7 (8%)	84	0.674 (1.00)	0.103 (1.00)	0.523 (1.00)	0.172 (1.00)	0.445 (1.00)	0.672 (1.00)	0.202 (1.00)	0.676 (1.00)
HMGB3	4 (4%)	87	0.805 (1.00)	0.243 (1.00)	0.343 (1.00)	0.645 (1.00)	0.364 (1.00)	0.315 (1.00)	0.811 (1.00)	0.436 (1.00)
PAMR1	7 (8%)	84	0.143 (1.00)	0.421 (1.00)	0.402 (1.00)	0.0646 (1.00)	0.445 (1.00)	0.129 (1.00)	0.0783 (1.00)	0.414 (1.00)
ZNF704	5 (5%)	86	0.352 (1.00)	0.733 (1.00)	0.704 (1.00)	0.395 (1.00)	0.793 (1.00)	1 (1.00)	0.71 (1.00)	1 (1.00)
SYNGAP1	9 (10%)	82	0.3 (1.00)	0.673 (1.00)	0.179 (1.00)	0.096 (1.00)	0.685 (1.00)	0.903 (1.00)	0.352 (1.00)	0.742 (1.00)
FKBP15	8 (9%)	83	0.716 (1.00)	0.233 (1.00)	0.182 (1.00)	0.0429 (1.00)	0.221 (1.00)	0.0923 (1.00)	0.565 (1.00)	0.166 (1.00)
CAMTA1	10 (11%)	81	0.218 (1.00)	0.37 (1.00)	0.25 (1.00)	0.027 (1.00)	0.569 (1.00)	0.331 (1.00)	1 (1.00)	0.309 (1.00)
OXR1	5 (5%)	86	0.0339 (1.00)	0.00483 (1.00)	0.0779 (1.00)	0.202 (1.00)	0.858 (1.00)	0.267 (1.00)	0.195 (1.00)	0.298 (1.00)
ZNF184	9 (10%)	82	1 (1.00)	1 (1.00)	1 (1.00)	0.128 (1.00)	0.455 (1.00)	0.582 (1.00)	0.254 (1.00)	0.388 (1.00)
ACBD3	5 (5%)	86	1 (1.00)	0.849 (1.00)	0.704 (1.00)	0.0141 (1.00)	0.679 (1.00)	0.501 (1.00)	0.509 (1.00)	0.433 (1.00)
TOB1	4 (4%)	87	0.805 (1.00)	0.674 (1.00)	0.68 (1.00)	0.325 (1.00)	0.742 (1.00)	0.829 (1.00)	0.266 (1.00)	0.682 (1.00)
OR10Z1	6 (7%)	85	0.747 (1.00)	0.435 (1.00)	0.755 (1.00)	0.0273 (1.00)	1 (1.00)	0.74 (1.00)	0.561 (1.00)	0.862 (1.00)
BEGAIN	6 (7%)	85	0.306 (1.00)	1 (1.00)	0.219 (1.00)	0.095 (1.00)	0.688 (1.00)	0.858 (1.00)	0.865 (1.00)	0.862 (1.00)
TNKS2	7 (8%)	84	0.212 (1.00)	0.694 (1.00)	1 (1.00)	0.0646 (1.00)	0.621 (1.00)	0.593 (1.00)	0.682 (1.00)	0.78 (1.00)
SNIP1	6 (7%)	85	0.356 (1.00)	0.657 (1.00)	0.0737 (1.00)	0.0273 (1.00)	0.426 (1.00)	0.284 (1.00)	0.261 (1.00)	0.348 (1.00)
FAM134A	5 (5%)	86	0.707 (1.00)	0.849 (1.00)	1 (1.00)	0.667 (1.00)	0.927 (1.00)	0.839 (1.00)	0.852 (1.00)	0.848 (1.00)
SPRR4	3 (3%)	88	0.605 (1.00)	0.778 (1.00)	0.211 (1.00)	0.569 (1.00)	0.573 (1.00)	0.0915 (1.00)	0.453 (1.00)	0.158 (1.00)
RTKN2	6 (7%)	85	0.473 (1.00)	0.567 (1.00)	0.219 (1.00)	1 (1.00)	0.385 (1.00)	1 (1.00)	0.412 (1.00)	0.662 (1.00)
OR2T33	6 (7%)	85	0.0667 (1.00)	0.0692 (1.00)	0.299 (1.00)	0.0126 (1.00)	0.258 (1.00)	0.649 (1.00)	0.226 (1.00)	0.473 (1.00)
OR5A1	8 (9%)	83	0.636 (1.00)	0.586 (1.00)	1 (1.00)	0.0429 (1.00)	0.184 (1.00)	0.795 (1.00)	0.637 (1.00)	0.565 (1.00)
RBMXL1	4 (4%)	87	0.805 (1.00)	0.557 (1.00)	0.559 (1.00)	0.645 (1.00)	0.561 (1.00)	0.037 (1.00)	1 (1.00)	0.682 (1.00)
CD93	8 (9%)	83	1 (1.00)	0.0726 (1.00)	0.16 (1.00)	0.11 (1.00)	0.456 (1.00)	0.891 (1.00)	0.353 (1.00)	0.898 (1.00)
HVCN1	4 (4%)	87	0.805 (1.00)	1 (1.00)	0.00201 (1.00)	0.185 (1.00)	0.0312 (1.00)	0.0207 (1.00)	0.0103 (1.00)	0.0437 (1.00)
OTX1	7 (8%)	84	0.674 (1.00)	0.616 (1.00)	1 (1.00)	0.0426 (1.00)	0.9 (1.00)	0.399 (1.00)	0.682 (1.00)	0.226 (1.00)
PRKCH	5 (5%)	86	0.423 (1.00)	0.119 (1.00)	0.426 (1.00)	0.0141 (1.00)	0.0924 (1.00)	0.0781 (1.00)	1 (1.00)	0.0492 (1.00)
LIMD1	7 (8%)	84	0.674 (1.00)	0.421 (1.00)	0.455 (1.00)	0.0646 (1.00)	0.279 (1.00)	0.253 (1.00)	0.602 (1.00)	0.466 (1.00)
C15ORF52	4 (4%)	87	0.671 (1.00)	0.243 (1.00)	0.559 (1.00)	0.185 (1.00)	0.213 (1.00)	0.668 (1.00)	1 (1.00)	0.813 (1.00)
ZNF552	10 (11%)	81	0.81 (1.00)	1 (1.00)	0.832 (1.00)	0.0186 (1.00)	0.0569 (1.00)	0.204 (1.00)	0.171 (1.00)	0.112 (1.00)
TFDP2	3 (3%)	88	1 (1.00)	0.778 (1.00)	0.795 (1.00)	0.569 (1.00)	0.498 (1.00)	0.783 (1.00)	1 (1.00)	1 (1.00)
CACNA1D	11 (12%)	80	0.637 (1.00)	0.0933 (1.00)	0.703 (1.00)	0.0545 (1.00)	0.641 (1.00)	0.839 (1.00)	0.92 (1.00)	0.842 (1.00)
SEC31A	11 (12%)	80	0.7 (1.00)	0.849 (1.00)	0.703 (1.00)	0.172 (1.00)	0.81 (1.00)	1 (1.00)	1 (1.00)	0.768 (1.00)
RETN	3 (3%)	88	0.201 (1.00)	0.266 (1.00)	0.314 (1.00)	0.315 (1.00)	0.573 (1.00)	0.298 (1.00)	0.324 (1.00)	0.316 (1.00)
PRKCD	7 (8%)	84	0.591 (1.00)	0.366 (1.00)	0.352 (1.00)	0.00719 (1.00)	0.854 (1.00)	0.399 (1.00)	0.113 (1.00)	0.226 (1.00)
ZNF326	5 (5%)	86	0.423 (1.00)	0.254 (1.00)	0.704 (1.00)	0.0141 (1.00)	0.0924 (1.00)	0.501 (1.00)	0.147 (1.00)	0.433 (1.00)
MED12L	13 (14%)	78	0.85 (1.00)	0.803 (1.00)	0.494 (1.00)	0.0759 (1.00)	0.457 (1.00)	0.805 (1.00)	0.69 (1.00)	1 (1.00)
ATP2B3	6 (7%)	85	0.473 (1.00)	1 (1.00)	0.219 (1.00)	0.095 (1.00)	0.189 (1.00)	0.406 (1.00)	1 (1.00)	0.662 (1.00)
FNDC7	6 (7%)	85	0.54 (1.00)	0.567 (1.00)	0.219 (1.00)	1 (1.00)	0.061 (1.00)	0.103 (1.00)	0.471 (1.00)	0.16 (1.00)
RBM45	6 (7%)	85	0.473 (1.00)	0.375 (1.00)	0.861 (1.00)	0.095 (1.00)	0.734 (1.00)	1 (1.00)	0.758 (1.00)	1 (1.00)
INF2	8 (9%)	83	0.43 (1.00)	0.329 (1.00)	0.801 (1.00)	0.0429 (1.00)	0.378 (1.00)	0.546 (1.00)	0.244 (1.00)	0.447 (1.00)
PARP3	4 (4%)	87	1 (1.00)	1 (1.00)	0.559 (1.00)	0.645 (1.00)	0.894 (1.00)	0.668 (1.00)	0.45 (1.00)	0.813 (1.00)
CDO1	5 (5%)	86	0.504 (1.00)	0.213 (1.00)	0.848 (1.00)	1 (1.00)	0.419 (1.00)	1 (1.00)	1 (1.00)	0.507 (1.00)
FAM98A	4 (4%)	87	0.448 (1.00)	0.305 (1.00)	0.441 (1.00)	1 (1.00)	0.508 (1.00)	0.243 (1.00)	0.564 (1.00)	0.345 (1.00)
RBM24	3 (3%)	88	1 (1.00)	0.266 (1.00)	0.44 (1.00)	1 (1.00)	0.426 (1.00)	0.591 (1.00)	0.235 (1.00)	0.456 (1.00)
AAMP	4 (4%)	87	1 (1.00)	0.557 (1.00)	0.255 (1.00)	0.645 (1.00)	0.0788 (1.00)	0.179 (1.00)	0.683 (1.00)	0.262 (1.00)
KBTBD4	4 (4%)	87	0.117 (1.00)	0.305 (1.00)	0.255 (1.00)	1 (1.00)	0.675 (1.00)	0.243 (1.00)	0.683 (1.00)	0.345 (1.00)
KCTD19	5 (5%)	86	0.837 (1.00)	0.622 (1.00)	0.188 (1.00)	0.065 (1.00)	0.927 (1.00)	0.839 (1.00)	1 (1.00)	0.848 (1.00)
EPS8L3	6 (7%)	85	0.212 (1.00)	0.497 (1.00)	1 (1.00)	0.0428 (1.00)	0.679 (1.00)	1 (1.00)	0.509 (1.00)	0.507 (1.00)
HMX2	5 (5%)	86	0.0726 (1.00)	0.176 (1.00)	0.426 (1.00)	0.0141 (1.00)	0.123 (1.00)	0.0781 (1.00)	0.0504 (1.00)	0.0492 (1.00)
C19ORF47	4 (4%)	87	0.671 (1.00)	0.369 (1.00)	1 (1.00)	0.0263 (1.00)	0.0655 (1.00)	0.401 (1.00)	0.266 (1.00)	0.2 (1.00)
NARG2	16 (18%)	75	0.161 (1.00)	0.00942 (1.00)	0.0497 (1.00)	0.00178 (1.00)	0.0498 (1.00)	0.199 (1.00)	0.00485 (1.00)	0.0384 (1.00)
ZC3H4	9 (10%)	82	0.9 (1.00)	1 (1.00)	0.108 (1.00)	0.0646 (1.00)	0.0391 (1.00)	0.0271 (1.00)	0.132 (1.00)	0.0645 (1.00)
TIGD7	4 (4%)	87	1 (1.00)	0.0892 (1.00)	0.441 (1.00)	0.0639 (1.00)	0.894 (1.00)	1 (1.00)	0.811 (1.00)	1 (1.00)
TATDN2	7 (8%)	84	0.591 (1.00)	0.888 (1.00)	0.592 (1.00)	0.0426 (1.00)	0.71 (1.00)	0.877 (1.00)	0.682 (1.00)	0.888 (1.00)
GSTA1	5 (5%)	86	0.423 (1.00)	0.733 (1.00)	1 (1.00)	1 (1.00)	0.73 (1.00)	0.598 (1.00)	0.852 (1.00)	0.603 (1.00)
PDZD7	7 (8%)	84	0.345 (1.00)	0.481 (1.00)	0.352 (1.00)	0.0924 (1.00)	0.592 (1.00)	0.399 (1.00)	0.467 (1.00)	0.414 (1.00)
SPRY4	3 (3%)	88	1 (1.00)	0.778 (1.00)	0.596 (1.00)	1 (1.00)	1 (1.00)	1 (1.00)	0.601 (1.00)	0.795 (1.00)
ZMYND19	4 (4%)	87	0.257 (1.00)	0.674 (1.00)	0.441 (1.00)	0.0639 (1.00)	1 (1.00)	1 (1.00)	1 (1.00)	1 (1.00)
SULT1B1	4 (4%)	87	0.805 (1.00)	1 (1.00)	0.559 (1.00)	0.0263 (1.00)	0.213 (1.00)	0.401 (1.00)	0.0256 (1.00)	0.2 (1.00)
WDR88	6 (7%)	85	0.54 (1.00)	0.375 (1.00)	0.181 (1.00)	0.048 (1.00)	0.836 (1.00)	0.563 (1.00)	0.656 (1.00)	0.566 (1.00)
PSME4	8 (9%)	83	0.212 (1.00)	0.0925 (1.00)	0.56 (1.00)	0.11 (1.00)	0.663 (1.00)	0.705 (1.00)	1 (1.00)	1 (1.00)
TMC7	4 (4%)	87	1 (1.00)	0.827 (1.00)	0.441 (1.00)	0.0639 (1.00)	1 (1.00)	1 (1.00)	1 (1.00)	1 (1.00)
FTH1	3 (3%)	88	0.798 (1.00)	0.621 (1.00)	0.596 (1.00)	1 (1.00)	1 (1.00)	0.783 (1.00)	1 (1.00)	1 (1.00)
MRPS5	6 (7%)	85	0.747 (1.00)	0.435 (1.00)	0.861 (1.00)	0.095 (1.00)	0.734 (1.00)	1 (1.00)	0.758 (1.00)	1 (1.00)
RAI1	8 (9%)	83	1 (1.00)	1 (1.00)	0.801 (1.00)	0.0429 (1.00)	0.779 (1.00)	0.546 (1.00)	0.244 (1.00)	0.447 (1.00)
RUNX1T1	8 (9%)	83	0.797 (1.00)	0.293 (1.00)	0.39 (1.00)	0.11 (1.00)	0.23 (1.00)	1 (1.00)	0.507 (1.00)	0.707 (1.00)
CCDC130	5 (5%)	86	0.352 (1.00)	0.119 (1.00)	0.5 (1.00)	0.0229 (1.00)	0.0335 (1.00)	0.715 (1.00)	0.71 (1.00)	0.603 (1.00)
ADAL	4 (4%)	87	0.671 (1.00)	0.557 (1.00)	0.795 (1.00)	0.569 (1.00)	0.426 (1.00)	0.591 (1.00)	0.235 (1.00)	0.456 (1.00)
TWISTNB	5 (5%)	86	1 (1.00)	0.304 (1.00)	0.245 (1.00)	0.065 (1.00)	0.679 (1.00)	0.201 (1.00)	0.509 (1.00)	0.433 (1.00)
CSNK1G3	6 (7%)	85	1 (1.00)	0.176 (1.00)	0.301 (1.00)	0.395 (1.00)	0.123 (1.00)	0.501 (1.00)	0.509 (1.00)	0.433 (1.00)
PLCZ1	4 (4%)	87	1 (1.00)	0.674 (1.00)	0.0412 (1.00)	0.645 (1.00)	0.894 (1.00)	1 (1.00)	0.811 (1.00)	1 (1.00)
CDC25A	3 (3%)	88	0.798 (1.00)	1 (1.00)	0.596 (1.00)	1 (1.00)	0.652 (1.00)	0.41 (1.00)	0.793 (1.00)	0.596 (1.00)
UNC5D	8 (9%)	83	0.716 (1.00)	0.895 (1.00)	0.235 (1.00)	0.138 (1.00)	0.339 (1.00)	0.232 (1.00)	0.244 (1.00)	0.124 (1.00)
KRTAP5-7	3 (3%)	88	0.0715 (1.00)	0.361 (1.00)	0.314 (1.00)	0.315 (1.00)	0.749 (1.00)	1 (1.00)	0.601 (1.00)	0.795 (1.00)
CPSF3	3 (3%)	88	0.428 (1.00)	0.111 (1.00)	0.139 (1.00)	0.0829 (1.00)	0.0939 (1.00)	0.217 (1.00)	0.0911 (1.00)	0.228 (1.00)
CA5A	3 (3%)	88	0.605 (1.00)	0.778 (1.00)	1 (1.00)	1 (1.00)	1 (1.00)	1 (1.00)	1 (1.00)	1 (1.00)
TSFM	4 (4%)	87	1 (1.00)	1 (1.00)	0.68 (1.00)	1 (1.00)	0.238 (1.00)	0.829 (1.00)	1 (1.00)	0.682 (1.00)
DNAJC12	3 (3%)	88	0.121 (1.00)	0.361 (1.00)	0.314 (1.00)	0.315 (1.00)	0.212 (1.00)	0.298 (1.00)	0.324 (1.00)	0.316 (1.00)
NPM2	3 (3%)	88	0.428 (1.00)	0.111 (1.00)	0.0343 (1.00)	0.0829 (1.00)	0.0939 (1.00)	0.139 (1.00)	0.235 (1.00)	0.0409 (1.00)
APOA1BP	5 (5%)	86	0.707 (1.00)	0.304 (1.00)	1 (1.00)	0.0428 (1.00)	0.45 (1.00)	1 (1.00)	0.852 (1.00)	1 (1.00)
DDX10	7 (8%)	84	0.169 (1.00)	0.283 (1.00)	0.402 (1.00)	0.0249 (1.00)	0.0861 (1.00)	0.215 (1.00)	0.0783 (1.00)	0.194 (1.00)
USP4	9 (10%)	82	0.158 (1.00)	0.263 (1.00)	0.251 (1.00)	0.0359 (1.00)	0.176 (1.00)	0.728 (1.00)	0.316 (1.00)	0.318 (1.00)
SLC7A9	6 (7%)	85	1 (1.00)	1 (1.00)	0.861 (1.00)	0.048 (1.00)	0.785 (1.00)	0.482 (1.00)	0.758 (1.00)	0.473 (1.00)
CDH10	14 (15%)	77	0.38 (1.00)	0.371 (1.00)	0.738 (1.00)	0.209 (1.00)	0.18 (1.00)	0.805 (1.00)	0.805 (1.00)	1 (1.00)
SNRNP35	5 (5%)	86	1 (1.00)	0.254 (1.00)	1 (1.00)	0.0428 (1.00)	0.679 (1.00)	0.598 (1.00)	0.509 (1.00)	0.433 (1.00)
SPINT1	5 (5%)	86	0.707 (1.00)	0.849 (1.00)	0.848 (1.00)	1 (1.00)	1 (1.00)	1 (1.00)	0.71 (1.00)	1 (1.00)
SMARCA2	7 (8%)	84	0.345 (1.00)	1 (1.00)	0.402 (1.00)	0.0249 (1.00)	0.467 (1.00)	0.107 (1.00)	0.202 (1.00)	0.169 (1.00)
RHOU	3 (3%)	88	0.0285 (1.00)	0.0555 (1.00)	0.314 (1.00)	0.315 (1.00)	0.212 (1.00)	0.298 (1.00)	0.324 (1.00)	0.316 (1.00)
NOLC1	4 (4%)	87	1 (1.00)	1 (1.00)	0.0904 (1.00)	0.185 (1.00)	0.0181 (1.00)	0.668 (1.00)	0.107 (1.00)	0.813 (1.00)
CDK5	3 (3%)	88	0.605 (1.00)	0.483 (1.00)	0.44 (1.00)	0.569 (1.00)	0.426 (1.00)	0.591 (1.00)	0.601 (1.00)	0.456 (1.00)
HIRA	7 (8%)	84	0.345 (1.00)	0.694 (1.00)	0.0885 (1.00)	0.172 (1.00)	0.95 (1.00)	0.672 (1.00)	0.602 (1.00)	0.676 (1.00)
GIGYF2	9 (10%)	82	1 (1.00)	1 (1.00)	0.379 (1.00)	0.751 (1.00)	0.542 (1.00)	1 (1.00)	1 (1.00)	0.673 (1.00)
KCNA4	9 (10%)	82	0.81 (1.00)	0.00191 (1.00)	0.0901 (1.00)	0.128 (1.00)	0.542 (1.00)	1 (1.00)	0.604 (1.00)	0.673 (1.00)
COL22A1	10 (11%)	81	1 (1.00)	0.917 (1.00)	0.56 (1.00)	0.117 (1.00)	0.0495 (1.00)	0.0667 (1.00)	0.00473 (1.00)	0.0606 (1.00)
RBM43	4 (4%)	87	0.555 (1.00)	0.131 (1.00)	0.795 (1.00)	1 (1.00)	0.857 (1.00)	0.783 (1.00)	0.793 (1.00)	1 (1.00)
ZNF880	4 (4%)	87	0.555 (1.00)	0.827 (1.00)	1 (1.00)	0.645 (1.00)	0.561 (1.00)	1 (1.00)	1 (1.00)	1 (1.00)
ACE	6 (7%)	85	0.632 (1.00)	0.375 (1.00)	0.861 (1.00)	0.0126 (1.00)	0.165 (1.00)	0.482 (1.00)	0.561 (1.00)	0.566 (1.00)
CDK8	6 (7%)	85	0.0836 (1.00)	0.0838 (1.00)	0.755 (1.00)	0.048 (1.00)	0.836 (1.00)	1 (1.00)	1 (1.00)	0.566 (1.00)
MGA	11 (12%)	80	0.492 (1.00)	0.721 (1.00)	0.279 (1.00)	0.137 (1.00)	0.263 (1.00)	1 (1.00)	0.843 (1.00)	0.842 (1.00)
NUCB1	5 (5%)	86	1 (1.00)	0.733 (1.00)	0.245 (1.00)	0.667 (1.00)	0.419 (1.00)	0.267 (1.00)	1 (1.00)	0.708 (1.00)
PPIL6	4 (4%)	87	0.671 (1.00)	0.369 (1.00)	0.343 (1.00)	0.185 (1.00)	0.0525 (1.00)	0.668 (1.00)	0.075 (1.00)	0.813 (1.00)
FKBP7	5 (5%)	86	0.103 (1.00)	0.0282 (1.00)	0.255 (1.00)	0.0639 (1.00)	0.0525 (1.00)	1 (1.00)	0.075 (1.00)	1 (1.00)
NTAN1	4 (4%)	87	0.805 (1.00)	1 (1.00)	0.343 (1.00)	0.645 (1.00)	0.364 (1.00)	0.315 (1.00)	0.811 (1.00)	0.436 (1.00)
PPP1R12C	6 (7%)	85	1 (1.00)	1 (1.00)	0.345 (1.00)	0.095 (1.00)	0.0404 (1.00)	0.74 (1.00)	0.561 (1.00)	0.662 (1.00)
RAI2	5 (5%)	86	0.504 (1.00)	1 (1.00)	0.5 (1.00)	0.667 (1.00)	0.858 (1.00)	0.715 (1.00)	0.852 (1.00)	0.848 (1.00)
SLAIN1	3 (3%)	88	0.428 (1.00)	0.483 (1.00)	0.795 (1.00)	0.00488 (1.00)	0.0252 (1.00)	0.139 (1.00)	0.012 (1.00)	0.0409 (1.00)
ACVR2A	6 (7%)	85	0.212 (1.00)	0.435 (1.00)	0.552 (1.00)	0.095 (1.00)	0.0484 (1.00)	0.0314 (1.00)	0.358 (1.00)	0.191 (1.00)
NTF3	6 (7%)	85	0.707 (1.00)	0.657 (1.00)	0.0974 (1.00)	0.248 (1.00)	0.0484 (1.00)	0.335 (1.00)	0.865 (1.00)	0.129 (1.00)
C9ORF69	4 (4%)	87	1 (1.00)	0.674 (1.00)	0.255 (1.00)	0.0639 (1.00)	0.323 (1.00)	0.829 (1.00)	0.45 (1.00)	0.682 (1.00)
KIAA0430	8 (9%)	83	0.636 (1.00)	0.656 (1.00)	0.121 (1.00)	0.11 (1.00)	0.95 (1.00)	0.705 (1.00)	1 (1.00)	0.5 (1.00)
MED12	6 (7%)	85	0.0506 (1.00)	0.0552 (1.00)	0.651 (1.00)	0.00625 (1.00)	0.0269 (1.00)	0.235 (1.00)	0.865 (1.00)	0.191 (1.00)
WIPF2	4 (4%)	87	0.671 (1.00)	0.243 (1.00)	0.559 (1.00)	0.00233 (1.00)	0.0655 (1.00)	0.137 (1.00)	0.0256 (1.00)	0.0726 (1.00)
IKZF5	3 (3%)	88	0.201 (1.00)	1 (1.00)	1 (1.00)	1 (1.00)	1 (1.00)	1 (1.00)	0.601 (1.00)	0.795 (1.00)
ACIN1	4 (4%)	87	0.671 (1.00)	0.369 (1.00)	0.68 (1.00)	0.0263 (1.00)	0.0655 (1.00)	0.401 (1.00)	0.45 (1.00)	0.2 (1.00)
LRCH1	9 (10%)	82	0.592 (1.00)	0.743 (1.00)	0.0081 (1.00)	0.0359 (1.00)	0.124 (1.00)	0.148 (1.00)	0.0286 (1.00)	0.285 (1.00)
CNGB1	7 (8%)	84	0.12 (1.00)	0.323 (1.00)	0.455 (1.00)	0.0924 (1.00)	1 (1.00)	0.768 (1.00)	0.779 (1.00)	0.598 (1.00)
ATP4A	10 (11%)	81	0.242 (1.00)	0.837 (1.00)	0.62 (1.00)	0.15 (1.00)	0.444 (1.00)	0.825 (1.00)	0.755 (1.00)	0.691 (1.00)
HSD17B7	5 (5%)	86	1 (1.00)	0.304 (1.00)	0.5 (1.00)	0.202 (1.00)	0.516 (1.00)	0.715 (1.00)	0.852 (1.00)	0.848 (1.00)
EGR2	3 (3%)	88	1 (1.00)	0.778 (1.00)	0.139 (1.00)	0.0829 (1.00)	0.0939 (1.00)	0.139 (1.00)	0.159 (1.00)	0.0409 (1.00)
INTS7	9 (10%)	82	0.659 (1.00)	0.292 (1.00)	0.137 (1.00)	0.0359 (1.00)	0.0452 (1.00)	0.582 (1.00)	0.0241 (1.00)	0.388 (1.00)
RPL10	3 (3%)	88	0.428 (1.00)	0.111 (1.00)	0.139 (1.00)	0.569 (1.00)	0.0252 (1.00)	0.139 (1.00)	0.012 (1.00)	0.0409 (1.00)
SCRIB	7 (8%)	84	0.884 (1.00)	0.191 (1.00)	0.455 (1.00)	0.0924 (1.00)	0.0908 (1.00)	0.768 (1.00)	0.602 (1.00)	1 (1.00)
CYP11B2	4 (4%)	87	0.257 (1.00)	1 (1.00)	0.255 (1.00)	0.645 (1.00)	0.0948 (1.00)	0.315 (1.00)	0.811 (1.00)	0.436 (1.00)
BCL3	3 (3%)	88	0.307 (1.00)	0.361 (1.00)	0.314 (1.00)	0.0188 (1.00)	0.749 (1.00)	1 (1.00)	0.601 (1.00)	0.795 (1.00)
PHACTR2	6 (7%)	85	0.306 (1.00)	0.497 (1.00)	0.651 (1.00)	0.0273 (1.00)	0.688 (1.00)	0.284 (1.00)	0.561 (1.00)	0.862 (1.00)
AFF4	4 (4%)	87	0.448 (1.00)	0.827 (1.00)	0.343 (1.00)	0.645 (1.00)	0.29 (1.00)	1 (1.00)	0.075 (1.00)	1 (1.00)
UNC5A	6 (7%)	85	1 (1.00)	1 (1.00)	0.704 (1.00)	0.0428 (1.00)	0.633 (1.00)	1 (1.00)	0.509 (1.00)	1 (1.00)
TRPM8	4 (4%)	87	0.346 (1.00)	0.305 (1.00)	1 (1.00)	1 (1.00)	0.561 (1.00)	1 (1.00)	0.564 (1.00)	1 (1.00)
U2AF1	3 (3%)	88	1 (1.00)	1 (1.00)	0.795 (1.00)	0.569 (1.00)	0.498 (1.00)	0.783 (1.00)	1 (1.00)	1 (1.00)
CCDC88A	4 (4%)	87	0.671 (1.00)	1 (1.00)	1 (1.00)	0.645 (1.00)	0.894 (1.00)	0.668 (1.00)	0.683 (1.00)	0.436 (1.00)
NKAP	5 (5%)	86	0.593 (1.00)	0.0668 (1.00)	0.245 (1.00)	0.065 (1.00)	0.858 (1.00)	1 (1.00)	0.852 (1.00)	0.848 (1.00)
PCOLCE2	8 (9%)	83	0.143 (1.00)	0.809 (1.00)	0.56 (1.00)	0.138 (1.00)	0.611 (1.00)	0.705 (1.00)	1 (1.00)	1 (1.00)
NT5C2	3 (3%)	88	1 (1.00)	1 (1.00)	0.0792 (1.00)	1 (1.00)	0.26 (1.00)	0.783 (1.00)	0.159 (1.00)	1 (1.00)
CMTM1	3 (3%)	88	0.428 (1.00)	0.111 (1.00)	0.0792 (1.00)	0.0829 (1.00)	0.0939 (1.00)	0.217 (1.00)	0.0911 (1.00)	0.228 (1.00)
SPAG9	7 (8%)	84	0.868 (1.00)	0.694 (1.00)	1 (1.00)	0.0646 (1.00)	0.166 (1.00)	0.593 (1.00)	0.0783 (1.00)	0.194 (1.00)
PHTF2	7 (8%)	84	0.306 (1.00)	0.481 (1.00)	0.147 (1.00)	0.0249 (1.00)	0.0861 (1.00)	0.215 (1.00)	0.0127 (1.00)	0.194 (1.00)
HIST1H1B	4 (4%)	87	0.671 (1.00)	0.0892 (1.00)	0.343 (1.00)	0.0263 (1.00)	0.0525 (1.00)	0.0659 (1.00)	0.107 (1.00)	0.104 (1.00)
UTRN	5 (5%)	86	1 (1.00)	0.622 (1.00)	0.5 (1.00)	0.065 (1.00)	0.388 (1.00)	0.598 (1.00)	0.247 (1.00)	0.603 (1.00)
MAGEC1	13 (14%)	78	0.284 (1.00)	0.477 (1.00)	0.738 (1.00)	0.171 (1.00)	0.553 (1.00)	0.875 (1.00)	0.925 (1.00)	0.684 (1.00)
NUDT19	4 (4%)	87	0.805 (1.00)	0.674 (1.00)	0.255 (1.00)	0.0263 (1.00)	0.129 (1.00)	0.315 (1.00)	0.811 (1.00)	0.436 (1.00)
DDX60	11 (12%)	80	0.538 (1.00)	0.468 (1.00)	0.0168 (1.00)	0.0783 (1.00)	0.938 (1.00)	0.22 (1.00)	0.92 (1.00)	0.38 (1.00)
SLCO1B3	8 (9%)	83	0.636 (1.00)	0.293 (1.00)	0.121 (1.00)	0.11 (1.00)	0.565 (1.00)	0.621 (1.00)	0.712 (1.00)	0.707 (1.00)
INTS6	3 (3%)	88	1 (1.00)	0.778 (1.00)	0.0792 (1.00)	0.569 (1.00)	0.26 (1.00)	0.783 (1.00)	0.453 (1.00)	1 (1.00)
AP2A2	6 (7%)	85	0.356 (1.00)	0.877 (1.00)	0.755 (1.00)	0.0273 (1.00)	0.0484 (1.00)	0.235 (1.00)	0.0576 (1.00)	0.191 (1.00)
SMYD5	6 (7%)	85	0.632 (1.00)	0.0838 (1.00)	0.181 (1.00)	0.048 (1.00)	0.942 (1.00)	0.563 (1.00)	0.656 (1.00)	0.566 (1.00)
CXORF66	4 (4%)	87	1 (1.00)	0.557 (1.00)	0.808 (1.00)	1 (1.00)	0.364 (1.00)	0.526 (1.00)	0.353 (1.00)	0.554 (1.00)
NKTR	6 (7%)	85	0.356 (1.00)	0.877 (1.00)	0.651 (1.00)	0.00625 (1.00)	0.024 (1.00)	0.0314 (1.00)	0.0102 (1.00)	0.00977 (1.00)
RTEL1	7 (8%)	84	0.774 (1.00)	0.616 (1.00)	0.193 (1.00)	0.0924 (1.00)	0.9 (1.00)	0.877 (1.00)	0.682 (1.00)	0.888 (1.00)
BCL9L	6 (7%)	85	1 (1.00)	0.76 (1.00)	0.219 (1.00)	0.095 (1.00)	0.189 (1.00)	0.406 (1.00)	1 (1.00)	0.662 (1.00)
DDX5	5 (5%)	86	0.593 (1.00)	0.849 (1.00)	1 (1.00)	0.0428 (1.00)	0.927 (1.00)	1 (1.00)	1 (1.00)	1 (1.00)
PCDHB2	6 (7%)	85	0.868 (1.00)	0.877 (1.00)	1 (1.00)	0.0273 (1.00)	0.582 (1.00)	0.858 (1.00)	0.358 (1.00)	0.758 (1.00)
GBP5	5 (5%)	86	0.593 (1.00)	0.849 (1.00)	1 (1.00)	0.0428 (1.00)	0.45 (1.00)	0.598 (1.00)	0.71 (1.00)	0.365 (1.00)
SCYL3	7 (8%)	84	0.511 (1.00)	0.191 (1.00)	0.305 (1.00)	0.0924 (1.00)	0.539 (1.00)	0.519 (1.00)	0.525 (1.00)	0.313 (1.00)
RERE	6 (7%)	85	1 (1.00)	0.76 (1.00)	0.299 (1.00)	0.048 (1.00)	0.785 (1.00)	0.482 (1.00)	0.758 (1.00)	1 (1.00)
CDHR5	7 (8%)	84	0.591 (1.00)	0.219 (1.00)	0.455 (1.00)	1 (1.00)	0.71 (1.00)	1 (1.00)	0.602 (1.00)	0.888 (1.00)
SATB1	8 (9%)	83	0.169 (1.00)	0.895 (1.00)	0.801 (1.00)	0.138 (1.00)	0.637 (1.00)	0.058 (1.00)	0.244 (1.00)	0.124 (1.00)
SMCR7	9 (10%)	82	0.27 (1.00)	0.743 (1.00)	0.481 (1.00)	0.0703 (1.00)	0.238 (1.00)	0.341 (1.00)	0.0984 (1.00)	0.254 (1.00)
ZNF548	6 (7%)	85	0.473 (1.00)	0.657 (1.00)	1 (1.00)	0.095 (1.00)	0.888 (1.00)	0.858 (1.00)	0.758 (1.00)	0.758 (1.00)
DHX36	9 (10%)	82	0.123 (1.00)	0.743 (1.00)	1 (1.00)	0.0359 (1.00)	0.47 (1.00)	0.728 (1.00)	0.672 (1.00)	0.742 (1.00)
MMP14	6 (7%)	85	0.473 (1.00)	1 (1.00)	0.651 (1.00)	0.095 (1.00)	0.888 (1.00)	0.235 (1.00)	0.358 (1.00)	0.191 (1.00)
ZMYND8	7 (8%)	84	0.345 (1.00)	0.789 (1.00)	0.773 (1.00)	0.0646 (1.00)	0.592 (1.00)	0.154 (1.00)	1 (1.00)	0.226 (1.00)
TRERF1	6 (7%)	85	0.747 (1.00)	0.375 (1.00)	0.651 (1.00)	0.095 (1.00)	0.785 (1.00)	0.284 (1.00)	1 (1.00)	0.862 (1.00)
CYP4F3	3 (3%)	88	0.428 (1.00)	0.111 (1.00)	0.0792 (1.00)	0.0829 (1.00)	0.311 (1.00)	0.217 (1.00)	0.159 (1.00)	0.228 (1.00)
SYNPO2L	6 (7%)	85	0.0506 (1.00)	0.497 (1.00)	0.861 (1.00)	0.048 (1.00)	0.498 (1.00)	1 (1.00)	0.865 (1.00)	0.862 (1.00)
MICALCL	4 (4%)	87	0.257 (1.00)	0.827 (1.00)	0.808 (1.00)	0.0639 (1.00)	1 (1.00)	0.829 (1.00)	1 (1.00)	0.682 (1.00)
PPP1R12B	4 (4%)	87	0.555 (1.00)	0.827 (1.00)	0.255 (1.00)	0.645 (1.00)	0.616 (1.00)	0.179 (1.00)	0.683 (1.00)	0.262 (1.00)
ENG	3 (3%)	88	0.428 (1.00)	0.111 (1.00)	0.0792 (1.00)	0.0829 (1.00)	0.0133 (1.00)	0.0449 (1.00)	0.159 (1.00)	0.0893 (1.00)
ZHX3	6 (7%)	85	1 (1.00)	0.275 (1.00)	0.848 (1.00)	0.065 (1.00)	0.36 (1.00)	0.201 (1.00)	0.509 (1.00)	0.365 (1.00)
SLCO2A1	5 (5%)	86	0.593 (1.00)	1 (1.00)	0.596 (1.00)	0.0428 (1.00)	0.226 (1.00)	0.598 (1.00)	0.71 (1.00)	0.365 (1.00)
PHRF1	7 (8%)	84	0.26 (1.00)	0.103 (1.00)	0.773 (1.00)	0.0249 (1.00)	0.0391 (1.00)	0.154 (1.00)	0.00718 (1.00)	0.0645 (1.00)
PUS7	4 (4%)	87	0.605 (1.00)	0.448 (1.00)	0.343 (1.00)	0.185 (1.00)	0.29 (1.00)	0.315 (1.00)	0.811 (1.00)	1 (1.00)
FLAD1	5 (5%)	86	0.504 (1.00)	0.733 (1.00)	0.704 (1.00)	0.0141 (1.00)	0.147 (1.00)	0.501 (1.00)	0.147 (1.00)	0.433 (1.00)
PDE12	3 (3%)	88		0.483 (1.00)	0.795 (1.00)	0.569 (1.00)	0.164 (1.00)	0.591 (1.00)	0.235 (1.00)	0.456 (1.00)
PNMA3	4 (4%)	87	0.805 (1.00)	0.448 (1.00)	0.343 (1.00)	0.185 (1.00)	0.364 (1.00)	0.315 (1.00)	0.196 (1.00)	0.436 (1.00)
CEP72	5 (5%)	86	0.504 (1.00)	1 (1.00)	0.245 (1.00)	0.065 (1.00)	0.73 (1.00)	0.715 (1.00)	0.852 (1.00)	0.603 (1.00)
COL5A1	10 (11%)	81	0.618 (1.00)	0.694 (1.00)	0.08 (1.00)	0.096 (1.00)	0.753 (1.00)	0.213 (1.00)	0.742 (1.00)	0.352 (1.00)
HIST1H1A	4 (4%)	87	0.176 (1.00)	0.243 (1.00)	0.559 (1.00)	0.00233 (1.00)	0.213 (1.00)	0.137 (1.00)	0.075 (1.00)	0.0726 (1.00)
WHSC1L1	5 (5%)	86	1 (1.00)	1 (1.00)	0.359 (1.00)	1 (1.00)	0.633 (1.00)	0.598 (1.00)	0.71 (1.00)	0.365 (1.00)
MTFMT	3 (3%)	88	0.428 (1.00)	0.184 (1.00)	0.44 (1.00)	0.315 (1.00)	1 (1.00)	0.139 (1.00)	0.235 (1.00)	0.456 (1.00)
KIAA2018	7 (8%)	84	0.591 (1.00)	0.366 (1.00)	0.127 (1.00)	0.0924 (1.00)	0.565 (1.00)	0.454 (1.00)	0.779 (1.00)	0.598 (1.00)
EDN1	3 (3%)	88	0.605 (1.00)	0.266 (1.00)	1 (1.00)	0.0188 (1.00)	1 (1.00)	0.591 (1.00)	0.235 (1.00)	0.456 (1.00)
LRRC41	5 (5%)	86	0.593 (1.00)	0.733 (1.00)	1 (1.00)	1 (1.00)	1 (1.00)	0.839 (1.00)	0.597 (1.00)	0.708 (1.00)
EIF5B	7 (8%)	84	0.3 (1.00)	0.789 (1.00)	0.678 (1.00)	0.0646 (1.00)	0.315 (1.00)	0.399 (1.00)	0.41 (1.00)	0.226 (1.00)
AFF3	11 (12%)	80	0.152 (1.00)	0.235 (1.00)	0.129 (1.00)	0.0545 (1.00)	0.193 (1.00)	0.248 (1.00)	0.0282 (1.00)	0.125 (1.00)
MEGF10	7 (8%)	84	1 (1.00)	1 (1.00)	0.455 (1.00)	0.0646 (1.00)	0.39 (1.00)	0.768 (1.00)	0.355 (1.00)	1 (1.00)
KBTBD7	3 (3%)	88	1 (1.00)	0.266 (1.00)	0.211 (1.00)	0.569 (1.00)	0.573 (1.00)	0.0915 (1.00)	0.453 (1.00)	0.158 (1.00)
IFT46	7 (8%)	84	0.473 (1.00)	0.421 (1.00)	0.651 (1.00)	0.00625 (1.00)	0.0747 (1.00)	0.284 (1.00)	0.261 (1.00)	0.758 (1.00)
SRGAP3	6 (7%)	85	0.306 (1.00)	0.877 (1.00)	0.0312 (1.00)	0.0273 (1.00)	0.688 (1.00)	0.74 (1.00)	0.307 (1.00)	0.862 (1.00)
TEX15	9 (10%)	82	0.3 (1.00)	0.213 (1.00)	0.66 (1.00)	0.00626 (1.00)	0.12 (1.00)	0.304 (1.00)	0.0545 (1.00)	0.318 (1.00)
OR7C2	3 (3%)	88	0.798 (1.00)	1 (1.00)	1 (1.00)	1 (1.00)	0.749 (1.00)	1 (1.00)	0.601 (1.00)	0.795 (1.00)
LMTK2	6 (7%)	85	0.259 (1.00)	1 (1.00)	0.219 (1.00)	0.095 (1.00)	0.189 (1.00)	0.406 (1.00)	1 (1.00)	0.662 (1.00)
MED23	5 (5%)	86	0.423 (1.00)	0.254 (1.00)	0.848 (1.00)	0.0141 (1.00)	0.147 (1.00)	0.501 (1.00)	0.509 (1.00)	0.433 (1.00)
ITPR2	8 (9%)	83	1 (1.00)	0.233 (1.00)	0.106 (1.00)	0.138 (1.00)	0.663 (1.00)	0.176 (1.00)	0.565 (1.00)	0.353 (1.00)
CCNK	4 (4%)	87	0.805 (1.00)	1 (1.00)	0.0412 (1.00)	0.0263 (1.00)	0.213 (1.00)	0.668 (1.00)	0.107 (1.00)	0.813 (1.00)
SLC39A4	5 (5%)	86	0.224 (1.00)	0.622 (1.00)	0.5 (1.00)	0.065 (1.00)	0.388 (1.00)	0.715 (1.00)	0.247 (1.00)	0.603 (1.00)
TEAD4	4 (4%)	87	0.555 (1.00)	0.827 (1.00)	0.68 (1.00)	0.0263 (1.00)	0.742 (1.00)	0.037 (1.00)	0.0256 (1.00)	0.2 (1.00)
TDRD10	3 (3%)	88	0.605 (1.00)	0.483 (1.00)	0.596 (1.00)	1 (1.00)	0.573 (1.00)	0.41 (1.00)	0.453 (1.00)	0.158 (1.00)
TTF1	3 (3%)	88	0.201 (1.00)	0.184 (1.00)	0.795 (1.00)	0.00488 (1.00)	0.0939 (1.00)	0.217 (1.00)	0.0911 (1.00)	0.228 (1.00)
RAB11FIP1	6 (7%)	85	0.356 (1.00)	0.76 (1.00)	0.181 (1.00)	0.048 (1.00)	0.888 (1.00)	0.858 (1.00)	0.865 (1.00)	0.862 (1.00)
HABP4	5 (5%)	86	0.593 (1.00)	1 (1.00)	0.5 (1.00)	0.0229 (1.00)	0.927 (1.00)	0.715 (1.00)	0.71 (1.00)	1 (1.00)
ATXN1	5 (5%)	86	1 (1.00)	0.849 (1.00)	1 (1.00)	0.065 (1.00)	0.73 (1.00)	1 (1.00)	1 (1.00)	0.708 (1.00)
PCDHA9	8 (9%)	83	0.377 (1.00)	0.0552 (1.00)	0.678 (1.00)	0.0426 (1.00)	1 (1.00)	0.519 (1.00)	0.885 (1.00)	0.313 (1.00)
GSN	6 (7%)	85	0.632 (1.00)	0.275 (1.00)	0.299 (1.00)	0.048 (1.00)	0.258 (1.00)	0.482 (1.00)	0.656 (1.00)	0.473 (1.00)
AEBP1	5 (5%)	86	0.423 (1.00)	0.119 (1.00)	1 (1.00)	0.065 (1.00)	0.0335 (1.00)	1 (1.00)	0.509 (1.00)	0.507 (1.00)
THBS1	3 (3%)	88	1 (1.00)	0.266 (1.00)	0.596 (1.00)	0.0357 (1.00)	0.498 (1.00)	0.783 (1.00)	1 (1.00)	1 (1.00)
UNC50	4 (4%)	87	0.448 (1.00)	0.0615 (1.00)	0.138 (1.00)	0.0138 (1.00)	0.457 (1.00)	0.526 (1.00)	0.353 (1.00)	0.554 (1.00)
CPXM2	4 (4%)	87	0.117 (1.00)	0.827 (1.00)	0.808 (1.00)	1 (1.00)	0.457 (1.00)	0.829 (1.00)	0.353 (1.00)	0.554 (1.00)
KCND3	4 (4%)	87	1 (1.00)	0.827 (1.00)	0.441 (1.00)	0.0639 (1.00)	1 (1.00)	1 (1.00)	1 (1.00)	1 (1.00)
GRM1	10 (11%)	81	0.377 (1.00)	0.764 (1.00)	0.458 (1.00)	0.0186 (1.00)	0.373 (1.00)	0.227 (1.00)	0.19 (1.00)	0.515 (1.00)
MRPL48	3 (3%)	88	0.605 (1.00)	0.483 (1.00)	0.795 (1.00)	0.00488 (1.00)	0.0252 (1.00)	0.139 (1.00)	0.012 (1.00)	0.0409 (1.00)
EIF4H	3 (3%)	88	1 (1.00)	0.0172 (1.00)	0.596 (1.00)	0.0357 (1.00)	1 (1.00)	0.783 (1.00)	1 (1.00)	1 (1.00)
ZFHX3	17 (19%)	74	0.605 (1.00)	0.107 (1.00)	0.248 (1.00)	0.115 (1.00)	0.589 (1.00)	0.186 (1.00)	0.492 (1.00)	0.311 (1.00)
VEZF1	5 (5%)	86	0.593 (1.00)	0.849 (1.00)	1 (1.00)	0.0428 (1.00)	0.192 (1.00)	1 (1.00)	0.71 (1.00)	1 (1.00)
CCDC151	5 (5%)	86	0.352 (1.00)	0.119 (1.00)	0.848 (1.00)	0.065 (1.00)	0.176 (1.00)	0.598 (1.00)	0.71 (1.00)	0.365 (1.00)
CR2	7 (8%)	84	0.591 (1.00)	0.888 (1.00)	0.755 (1.00)	0.095 (1.00)	0.734 (1.00)	0.858 (1.00)	0.758 (1.00)	0.758 (1.00)
YBX2	3 (3%)	88	0.428 (1.00)	0.483 (1.00)	0.211 (1.00)	0.00488 (1.00)	0.164 (1.00)	0.217 (1.00)	0.0911 (1.00)	0.228 (1.00)
CCDC63	3 (3%)	88	0.428 (1.00)	0.483 (1.00)	0.795 (1.00)	0.00488 (1.00)	0.0939 (1.00)	0.217 (1.00)	0.0911 (1.00)	0.228 (1.00)
GPR113	6 (7%)	85	0.473 (1.00)	0.304 (1.00)	0.0103 (1.00)	0.0141 (1.00)	0.0749 (1.00)	0.0989 (1.00)	0.0224 (1.00)	0.141 (1.00)
EPHX1	4 (4%)	87	0.805 (1.00)	1 (1.00)	0.255 (1.00)	0.0263 (1.00)	0.816 (1.00)	0.315 (1.00)	0.811 (1.00)	0.436 (1.00)
ZACN	3 (3%)	88	0.798 (1.00)	0.621 (1.00)	0.211 (1.00)	1 (1.00)	0.573 (1.00)	0.41 (1.00)	0.453 (1.00)	0.596 (1.00)
ZNF878	5 (5%)	86	0.224 (1.00)	0.622 (1.00)	1 (1.00)	0.065 (1.00)	0.793 (1.00)	1 (1.00)	0.71 (1.00)	1 (1.00)
KLC3	3 (3%)	88	0.428 (1.00)	0.266 (1.00)	0.0102 (1.00)	0.0829 (1.00)	0.0379 (1.00)	0.00588 (1.00)	0.0393 (1.00)	0.0102 (1.00)
PPIG	3 (3%)	88	0.428 (1.00)	1 (1.00)
PSMB4	4 (4%)	87	0.671 (1.00)	1 (1.00)	1 (1.00)	0.645 (1.00)	0.561 (1.00)	1 (1.00)	1 (1.00)	0.554 (1.00)
AFAP1L2	8 (9%)	83	0.491 (1.00)	0.809 (1.00)	0.182 (1.00)	0.0429 (1.00)	0.637 (1.00)	0.441 (1.00)	0.353 (1.00)	0.631 (1.00)
RBBP8	8 (9%)	83	0.122 (1.00)	1 (1.00)	1 (1.00)	0.0646 (1.00)	0.539 (1.00)	1 (1.00)	1 (1.00)	0.78 (1.00)
MAMLD1	8 (9%)	83	0.797 (1.00)	0.162 (1.00)	0.712 (1.00)	0.027 (1.00)	0.811 (1.00)	0.489 (1.00)	0.451 (1.00)	0.309 (1.00)
FOXN2	3 (3%)	88	0.798 (1.00)	0.621 (1.00)	0.596 (1.00)	1 (1.00)	0.498 (1.00)	0.783 (1.00)	1 (1.00)	1 (1.00)
PRF1	6 (7%)	85	0.212 (1.00)	0.657 (1.00)	1 (1.00)	0.0263 (1.00)	0.213 (1.00)	0.668 (1.00)	0.107 (1.00)	0.104 (1.00)
KIAA0100	8 (9%)	83	0.889 (1.00)	0.0925 (1.00)	0.348 (1.00)	0.138 (1.00)	0.327 (1.00)	0.546 (1.00)	0.127 (1.00)	0.447 (1.00)
MYO9B	8 (9%)	83	0.558 (1.00)	1 (1.00)	0.712 (1.00)	0.138 (1.00)	0.811 (1.00)	1 (1.00)	1 (1.00)	0.802 (1.00)
GABRD	5 (5%)	86	0.176 (1.00)	0.849 (1.00)	0.596 (1.00)	0.065 (1.00)	0.793 (1.00)	0.201 (1.00)	0.111 (1.00)	0.365 (1.00)
SLC4A5	9 (10%)	82	0.194 (1.00)	0.614 (1.00)	0.251 (1.00)	0.0703 (1.00)	0.581 (1.00)	0.728 (1.00)	1 (1.00)	0.742 (1.00)
XYLT2	4 (4%)	87	0.176 (1.00)	0.369 (1.00)	0.559 (1.00)	0.00233 (1.00)	0.0655 (1.00)	0.137 (1.00)	0.0256 (1.00)	0.0726 (1.00)
RIT1	3 (3%)	88	1 (1.00)	1 (1.00)	0.795 (1.00)	1 (1.00)	1 (1.00)	0.783 (1.00)	1 (1.00)	1 (1.00)
HSP90AA1	6 (7%)	85	0.868 (1.00)	0.435 (1.00)	1 (1.00)	0.095 (1.00)	0.229 (1.00)	0.858 (1.00)	0.358 (1.00)	0.758 (1.00)
STK10	5 (5%)	86	0.284 (1.00)	0.147 (1.00)	0.245 (1.00)	0.065 (1.00)	0.482 (1.00)	0.839 (1.00)	0.852 (1.00)	0.848 (1.00)
MTMR3	5 (5%)	86	0.707 (1.00)	0.849 (1.00)	0.704 (1.00)	0.667 (1.00)	0.209 (1.00)	0.839 (1.00)	0.433 (1.00)	0.848 (1.00)
CD3EAP	3 (3%)	88	0.0715 (1.00)	0.0172 (1.00)	1 (1.00)	0.315 (1.00)	0.212 (1.00)	1 (1.00)	0.324 (1.00)	0.795 (1.00)
CSF1R	4 (4%)	87	0.671 (1.00)	0.0892 (1.00)	0.255 (1.00)	0.0639 (1.00)	0.29 (1.00)	1 (1.00)	0.811 (1.00)	1 (1.00)
PARVB	3 (3%)	88	0.307 (1.00)
RASSF2	4 (4%)	87	1 (1.00)	0.674 (1.00)	0.343 (1.00)	0.185 (1.00)	0.742 (1.00)	0.668 (1.00)	0.45 (1.00)	0.813 (1.00)
SV2A	4 (4%)	87	0.555 (1.00)	1 (1.00)	1 (1.00)	0.645 (1.00)	0.561 (1.00)	1 (1.00)	1 (1.00)	1 (1.00)
GNAS	10 (11%)	81	0.909 (1.00)	0.694 (1.00)	0.25 (1.00)	0.0872 (1.00)	0.569 (1.00)	0.68 (1.00)	0.688 (1.00)	0.125 (1.00)
HMMR	6 (7%)	85	0.473 (1.00)	0.877 (1.00)	0.651 (1.00)	0.0273 (1.00)	0.888 (1.00)	0.284 (1.00)	0.561 (1.00)	0.862 (1.00)
MBD6	4 (4%)	87	1 (1.00)	0.674 (1.00)	1 (1.00)	1 (1.00)	1 (1.00)	1 (1.00)	1 (1.00)	1 (1.00)
NDUFAF2	4 (4%)	87	0.176 (1.00)	1 (1.00)	0.255 (1.00)	0.645 (1.00)	0.04 (1.00)	0.315 (1.00)	0.196 (1.00)	0.0437 (1.00)
STAM	4 (4%)	87	0.805 (1.00)	1 (1.00)	1 (1.00)	0.0263 (1.00)	0.323 (1.00)	0.668 (1.00)	0.45 (1.00)	0.813 (1.00)
KIAA1407	5 (5%)	86	0.103 (1.00)	0.622 (1.00)	0.596 (1.00)	0.0229 (1.00)	0.0384 (1.00)	0.201 (1.00)	0.111 (1.00)	0.087 (1.00)
PCDH15	10 (11%)	81	0.337 (1.00)	0.37 (1.00)	0.0212 (1.00)	0.0472 (1.00)	0.292 (1.00)	0.241 (1.00)	0.0708 (1.00)	0.106 (1.00)
SEC24D	5 (5%)	86	1 (1.00)	0.733 (1.00)	0.301 (1.00)	1 (1.00)	0.419 (1.00)	0.501 (1.00)	1 (1.00)	0.433 (1.00)
SH3BP1	4 (4%)	87	0.671 (1.00)	0.369 (1.00)	0.0412 (1.00)	0.00233 (1.00)	0.0525 (1.00)	0.00994 (1.00)	0.075 (1.00)	0.0247 (1.00)
ZFP36L2	3 (3%)	88	1 (1.00)	0.266 (1.00)	0.596 (1.00)	0.0357 (1.00)	0.498 (1.00)	0.591 (1.00)	1 (1.00)	0.456 (1.00)
IKZF2	3 (3%)	88	0.798 (1.00)	0.184 (1.00)	0.314 (1.00)	0.0188 (1.00)	0.749 (1.00)	1 (1.00)	0.601 (1.00)	0.795 (1.00)
RARRES3	4 (4%)	87	0.671 (1.00)	0.674 (1.00)	1 (1.00)	0.0263 (1.00)	0.323 (1.00)	0.668 (1.00)	0.45 (1.00)	0.813 (1.00)
MESDC2	4 (4%)	87	0.555 (1.00)	1 (1.00)	1 (1.00)	0.645 (1.00)	1 (1.00)	0.829 (1.00)	1 (1.00)	0.682 (1.00)
ST3GAL5	3 (3%)	88	0.605 (1.00)	1 (1.00)	1 (1.00)	0.0357 (1.00)	0.426 (1.00)	0.591 (1.00)	0.601 (1.00)	0.456 (1.00)
CRIPAK	3 (3%)	88	1 (1.00)	0.778 (1.00)	1 (1.00)	0.315 (1.00)	0.573 (1.00)	1 (1.00)	0.601 (1.00)	0.795 (1.00)
LILRB5	7 (8%)	84	0.143 (1.00)	0.103 (1.00)	0.885 (1.00)	0.0646 (1.00)	0.467 (1.00)	0.672 (1.00)	0.602 (1.00)	0.676 (1.00)
KIAA1967	4 (4%)	87	1 (1.00)	0.674 (1.00)	0.255 (1.00)	0.0639 (1.00)	0.0948 (1.00)	1 (1.00)	0.811 (1.00)	1 (1.00)
UTY	3 (3%)	88	0.201 (1.00)	0.266 (1.00)	0.211 (1.00)	0.569 (1.00)	0.0379 (1.00)	0.0915 (1.00)	0.0393 (1.00)	0.158 (1.00)
REC8	4 (4%)	87	0.176 (1.00)	0.243 (1.00)	0.343 (1.00)	0.00233 (1.00)	0.0246 (1.00)	0.137 (1.00)	0.0256 (1.00)	0.0726 (1.00)
PIH1D2	3 (3%)	88	0.428 (1.00)	0.266 (1.00)	0.211 (1.00)	0.00488 (1.00)	0.311 (1.00)	0.217 (1.00)	0.159 (1.00)	0.228 (1.00)
BRAF	3 (3%)	88	1 (1.00)	0.184 (1.00)	0.596 (1.00)	1 (1.00)	0.857 (1.00)	0.41 (1.00)	0.793 (1.00)	0.596 (1.00)
WDR90	5 (5%)	86	0.423 (1.00)	0.254 (1.00)	0.848 (1.00)	0.0428 (1.00)	0.0834 (1.00)	0.201 (1.00)	0.0127 (1.00)	0.087 (1.00)

'ATRX MUTATION STATUS' versus 'CN_CNMF'

P value = 0.169 (Fisher's exact test), Q value = 1

Table S1. Gene #1: 'ATRX MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
ATRX MUTATED	1	6	0
ATRX WILD-TYPE	23	39	21

'ATRX MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0195 (Fisher's exact test), Q value = 1

Table S2. Gene #1: 'ATRX MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
ATRX MUTATED	0	6	1
ATRX WILD-TYPE	31	29	23

Figure S1. Get High-res Image Gene #1: 'ATRX MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'ATRX MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.147 (Fisher's exact test), Q value = 1

Table S3. Gene #1: 'ATRX MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
ATRX MUTATED	1	3	3
ATRX WILD-TYPE	39	22	16

'ATRX MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.172 (Fisher's exact test), Q value = 1

Table S4. Gene #1: 'ATRX MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
ATRX MUTATED	0	5	2
ATRX WILD-TYPE	1	26	50

'ATRX MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.445 (Fisher's exact test), Q value = 1

Table S5. Gene #1: 'ATRX MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
ATRX MUTATED	1	3	1	2
ATRX WILD-TYPE	30	17	10	20

'ATRX MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.215 (Fisher's exact test), Q value = 1

Table S6. Gene #1: 'ATRX MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
ATRX MUTATED	1	2	4
ATRX WILD-TYPE	36	14	27

'ATRX MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.467 (Fisher's exact test), Q value = 1

Table S7. Gene #1: 'ATRX MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
ATRX MUTATED	2	3	2
ATRX WILD-TYPE	36	17	24

'ATRX MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.194 (Fisher's exact test), Q value = 1

Table S8. Gene #1: 'ATRX MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
ATRX MUTATED	4	2	1
ATRX WILD-TYPE	23	17	37

'GRIN1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.3 (Fisher's exact test), Q value = 1

Table S9. Gene #2: 'GRIN1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
GRIN1 MUTATED	3	4	0
GRIN1 WILD-TYPE	21	41	21

'GRIN1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.191 (Fisher's exact test), Q value = 1

Table S10. Gene #2: 'GRIN1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
GRIN1 MUTATED	1	2	4
GRIN1 WILD-TYPE	30	33	20

'GRIN1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0274 (Fisher's exact test), Q value = 1

Table S11. Gene #2: 'GRIN1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
GRIN1 MUTATED	3	0	4
GRIN1 WILD-TYPE	37	25	15

Figure S2. Get High-res Image Gene #2: 'GRIN1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

'GRIN1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0646 (Fisher's exact test), Q value = 1

Table S12. Gene #2: 'GRIN1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
GRIN1 MUTATED	1	3	3
GRIN1 WILD-TYPE	0	28	49

'GRIN1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.95 (Fisher's exact test), Q value = 1

Table S13. Gene #2: 'GRIN1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
GRIN1 MUTATED	2	2	1	2
GRIN1 WILD-TYPE	29	18	10	20

'GRIN1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.768 (Fisher's exact test), Q value = 1

Table S14. Gene #2: 'GRIN1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
GRIN1 MUTATED	3	2	2
GRIN1 WILD-TYPE	34	14	29

'GRIN1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.602 (Fisher's exact test), Q value = 1

Table S15. Gene #2: 'GRIN1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
GRIN1 MUTATED	2	2	3
GRIN1 WILD-TYPE	36	18	23

'GRIN1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S16. Gene #2: 'GRIN1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
GRIN1 MUTATED	2	2	3
GRIN1 WILD-TYPE	25	17	35

'DHX9 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.491 (Fisher's exact test), Q value = 1

Table S17. Gene #3: 'DHX9 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
DHX9 MUTATED	1	4	3
DHX9 WILD-TYPE	23	41	18

'DHX9 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.237 (Fisher's exact test), Q value = 1

Table S18. Gene #3: 'DHX9 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
DHX9 MUTATED	1	4	4
DHX9 WILD-TYPE	30	31	20

'DHX9 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.733 (Fisher's exact test), Q value = 1

Table S19. Gene #3: 'DHX9 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
DHX9 MUTATED	4	2	3
DHX9 WILD-TYPE	36	23	16

'DHX9 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0703 (Fisher's exact test), Q value = 1

Table S20. Gene #3: 'DHX9 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
DHX9 MUTATED	1	4	4
DHX9 WILD-TYPE	0	27	48

'DHX9 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.12 (Fisher's exact test), Q value = 1

Table S21. Gene #3: 'DHX9 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
DHX9 MUTATED	1	3	3	2
DHX9 WILD-TYPE	30	17	8	20

'DHX9 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.728 (Fisher's exact test), Q value = 1

Table S22. Gene #3: 'DHX9 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
DHX9 MUTATED	3	2	4
DHX9 WILD-TYPE	34	14	27

'DHX9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.604 (Fisher's exact test), Q value = 1

Table S23. Gene #3: 'DHX9 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
DHX9 MUTATED	3	2	4
DHX9 WILD-TYPE	35	18	22

'DHX9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.742 (Fisher's exact test), Q value = 1

Table S24. Gene #3: 'DHX9 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
DHX9 MUTATED	4	2	3
DHX9 WILD-TYPE	23	17	35

'HIBCH MUTATION STATUS' versus 'CN_CNMF'

P value = 0.716 (Fisher's exact test), Q value = 1

Table S25. Gene #4: 'HIBCH MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
HIBCH MUTATED	1	5	2
HIBCH WILD-TYPE	23	40	19

'HIBCH MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.456 (Fisher's exact test), Q value = 1

Table S26. Gene #4: 'HIBCH MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
HIBCH MUTATED	2	5	1
HIBCH WILD-TYPE	29	30	23

'HIBCH MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S27. Gene #4: 'HIBCH MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
HIBCH MUTATED	4	2	2
HIBCH WILD-TYPE	36	23	17

'HIBCH MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S28. Gene #4: 'HIBCH MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
HIBCH MUTATED	0	3	5
HIBCH WILD-TYPE	1	28	47

'HIBCH MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.159 (Fisher's exact test), Q value = 1

Table S29. Gene #4: 'HIBCH MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
HIBCH MUTATED	2	1	0	5
HIBCH WILD-TYPE	29	19	11	17

'HIBCH MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.705 (Fisher's exact test), Q value = 1

Table S30. Gene #4: 'HIBCH MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
HIBCH MUTATED	4	2	2
HIBCH WILD-TYPE	33	14	29

'HIBCH MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S31. Gene #4: 'HIBCH MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
HIBCH MUTATED	4	2	2
HIBCH WILD-TYPE	34	18	24

'HIBCH MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S32. Gene #4: 'HIBCH MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
HIBCH MUTATED	2	2	4
HIBCH WILD-TYPE	25	17	34

'AFTPH MUTATION STATUS' versus 'CN_CNMF'

P value = 0.28 (Fisher's exact test), Q value = 1

Table S33. Gene #5: 'AFTPH MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
AFTPH MUTATED	5	8	1
AFTPH WILD-TYPE	19	37	20

'AFTPH MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.744 (Fisher's exact test), Q value = 1

Table S34. Gene #5: 'AFTPH MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
AFTPH MUTATED	4	5	5
AFTPH WILD-TYPE	27	30	19

'AFTPH MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.594 (Fisher's exact test), Q value = 1

Table S35. Gene #5: 'AFTPH MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
AFTPH MUTATED	5	5	4
AFTPH WILD-TYPE	35	20	15

'AFTPH MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.134 (Fisher's exact test), Q value = 1

Table S36. Gene #5: 'AFTPH MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
AFTPH MUTATED	1	6	7
AFTPH WILD-TYPE	0	25	45

'AFTPH MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0417 (Fisher's exact test), Q value = 1

Table S37. Gene #5: 'AFTPH MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
AFTPH MUTATED	5	3	5	1
AFTPH WILD-TYPE	26	17	6	21

Figure S3. Get High-res Image Gene #5: 'AFTPH MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

'AFTPH MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.395 (Fisher's exact test), Q value = 1

Table S38. Gene #5: 'AFTPH MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
AFTPH MUTATED	4	3	7
AFTPH WILD-TYPE	33	13	24

'AFTPH MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.804 (Fisher's exact test), Q value = 1

Table S39. Gene #5: 'AFTPH MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
AFTPH MUTATED	5	4	5
AFTPH WILD-TYPE	33	16	21

'AFTPH MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S40. Gene #5: 'AFTPH MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
AFTPH MUTATED	5	3	6
AFTPH WILD-TYPE	22	16	32

'APP MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0372 (Fisher's exact test), Q value = 1

Table S41. Gene #6: 'APP MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
APP MUTATED	0	8	1
APP WILD-TYPE	24	37	20

Figure S4. Get High-res Image Gene #6: 'APP MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'APP MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.764 (Fisher's exact test), Q value = 1

Table S42. Gene #6: 'APP MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
APP MUTATED	3	5	2
APP WILD-TYPE	28	30	22

'APP MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.733 (Fisher's exact test), Q value = 1

Table S43. Gene #6: 'APP MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
APP MUTATED	4	2	3
APP WILD-TYPE	36	23	16

'APP MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0359 (Fisher's exact test), Q value = 1

Table S44. Gene #6: 'APP MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
APP MUTATED	1	5	3
APP WILD-TYPE	0	26	49

Figure S5. Get High-res Image Gene #6: 'APP MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'APP MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.238 (Fisher's exact test), Q value = 1

Table S45. Gene #6: 'APP MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
APP MUTATED	1	4	1	3
APP WILD-TYPE	30	16	10	19

'APP MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.728 (Fisher's exact test), Q value = 1

Table S46. Gene #6: 'APP MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
APP MUTATED	3	2	4
APP WILD-TYPE	34	14	27

'APP MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.316 (Fisher's exact test), Q value = 1

Table S47. Gene #6: 'APP MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
APP MUTATED	2	3	4
APP WILD-TYPE	36	17	22

'APP MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.318 (Fisher's exact test), Q value = 1

Table S48. Gene #6: 'APP MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
APP MUTATED	4	3	2
APP WILD-TYPE	23	16	36

'TMC4 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S49. Gene #7: 'TMC4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
TMC4 MUTATED	5	10	4
TMC4 WILD-TYPE	19	35	17

'TMC4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.417 (Fisher's exact test), Q value = 1

Table S50. Gene #7: 'TMC4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
TMC4 MUTATED	9	6	4
TMC4 WILD-TYPE	22	29	20

'TMC4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.44 (Fisher's exact test), Q value = 1

Table S51. Gene #7: 'TMC4 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
TMC4 MUTATED	10	6	2
TMC4 WILD-TYPE	30	19	17

'TMC4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.162 (Fisher's exact test), Q value = 1

Table S52. Gene #7: 'TMC4 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
TMC4 MUTATED	1	5	12
TMC4 WILD-TYPE	0	26	40

'TMC4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.897 (Fisher's exact test), Q value = 1

Table S53. Gene #7: 'TMC4 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
TMC4 MUTATED	6	4	2	6
TMC4 WILD-TYPE	25	16	9	16

'TMC4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.112 (Fisher's exact test), Q value = 1

Table S54. Gene #7: 'TMC4 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
TMC4 MUTATED	7	1	10
TMC4 WILD-TYPE	30	15	21

'TMC4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.904 (Fisher's exact test), Q value = 1

Table S55. Gene #7: 'TMC4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
TMC4 MUTATED	8	5	5
TMC4 WILD-TYPE	30	15	21

'TMC4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.297 (Fisher's exact test), Q value = 1

Table S56. Gene #7: 'TMC4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
TMC4 MUTATED	8	2	8
TMC4 WILD-TYPE	19	17	30

'KIAA0020 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.352 (Fisher's exact test), Q value = 1

Table S57. Gene #8: 'KIAA0020 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
KIAA0020 MUTATED	0	3	2
KIAA0020 WILD-TYPE	24	42	19

'KIAA0020 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.849 (Fisher's exact test), Q value = 1

Table S58. Gene #8: 'KIAA0020 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
KIAA0020 MUTATED	1	2	2
KIAA0020 WILD-TYPE	30	33	22

'KIAA0020 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.704 (Fisher's exact test), Q value = 1

Table S59. Gene #8: 'KIAA0020 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
KIAA0020 MUTATED	2	1	2
KIAA0020 WILD-TYPE	38	24	17

'KIAA0020 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.395 (Fisher's exact test), Q value = 1

Table S60. Gene #8: 'KIAA0020 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
KIAA0020 MUTATED	0	3	2
KIAA0020 WILD-TYPE	1	28	50

'KIAA0020 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.633 (Fisher's exact test), Q value = 1

Table S61. Gene #8: 'KIAA0020 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
KIAA0020 MUTATED	1	2	0	2
KIAA0020 WILD-TYPE	30	18	11	20

'KIAA0020 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S62. Gene #8: 'KIAA0020 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
KIAA0020 MUTATED	2	1	2
KIAA0020 WILD-TYPE	35	15	29

'KIAA0020 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.71 (Fisher's exact test), Q value = 1

Table S63. Gene #8: 'KIAA0020 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
KIAA0020 MUTATED	2	2	1
KIAA0020 WILD-TYPE	36	18	25

'KIAA0020 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S64. Gene #8: 'KIAA0020 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
KIAA0020 MUTATED	2	1	2
KIAA0020 WILD-TYPE	25	18	36

'BRDT MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00345 (Fisher's exact test), Q value = 1

Table S65. Gene #9: 'BRDT MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
BRDT MUTATED	1	14	1
BRDT WILD-TYPE	23	31	20

Figure S6. Get High-res Image Gene #9: 'BRDT MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'BRDT MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0134 (Fisher's exact test), Q value = 1

Table S66. Gene #9: 'BRDT MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
BRDT MUTATED	2	12	3
BRDT WILD-TYPE	29	23	21

Figure S7. Get High-res Image Gene #9: 'BRDT MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'BRDT MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0967 (Fisher's exact test), Q value = 1

Table S67. Gene #9: 'BRDT MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
BRDT MUTATED	5	5	7
BRDT WILD-TYPE	35	20	12

'BRDT MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00876 (Fisher's exact test), Q value = 1

Table S68. Gene #9: 'BRDT MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
BRDT MUTATED	1	10	6
BRDT WILD-TYPE	0	21	46

Figure S8. Get High-res Image Gene #9: 'BRDT MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'BRDT MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0742 (Fisher's exact test), Q value = 1

Table S69. Gene #9: 'BRDT MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
BRDT MUTATED	2	6	3	6
BRDT WILD-TYPE	29	14	8	16

'BRDT MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.131 (Fisher's exact test), Q value = 1

Table S70. Gene #9: 'BRDT MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
BRDT MUTATED	4	4	9
BRDT WILD-TYPE	33	12	22

'BRDT MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.26 (Fisher's exact test), Q value = 1

Table S71. Gene #9: 'BRDT MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
BRDT MUTATED	5	6	6
BRDT WILD-TYPE	33	14	20

'BRDT MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.257 (Fisher's exact test), Q value = 1

Table S72. Gene #9: 'BRDT MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
BRDT MUTATED	8	4	5
BRDT WILD-TYPE	19	15	33

'SETD1A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.881 (Fisher's exact test), Q value = 1

Table S73. Gene #10: 'SETD1A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
SETD1A MUTATED	5	9	3
SETD1A WILD-TYPE	19	36	18

'SETD1A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.801 (Fisher's exact test), Q value = 1

Table S74. Gene #10: 'SETD1A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
SETD1A MUTATED	7	6	4
SETD1A WILD-TYPE	24	29	20

'SETD1A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.683 (Fisher's exact test), Q value = 1

Table S75. Gene #10: 'SETD1A MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
SETD1A MUTATED	8	4	5
SETD1A WILD-TYPE	32	21	14

'SETD1A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.312 (Fisher's exact test), Q value = 1

Table S76. Gene #10: 'SETD1A MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
SETD1A MUTATED	0	9	8
SETD1A WILD-TYPE	1	22	44

'SETD1A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.822 (Fisher's exact test), Q value = 1

Table S77. Gene #10: 'SETD1A MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
SETD1A MUTATED	7	5	2	3
SETD1A WILD-TYPE	24	15	9	19

'SETD1A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.483 (Fisher's exact test), Q value = 1

Table S78. Gene #10: 'SETD1A MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
SETD1A MUTATED	7	5	5
SETD1A WILD-TYPE	30	11	26

'SETD1A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.826 (Fisher's exact test), Q value = 1

Table S79. Gene #10: 'SETD1A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
SETD1A MUTATED	8	3	6
SETD1A WILD-TYPE	30	17	20

'SETD1A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.751 (Fisher's exact test), Q value = 1

Table S80. Gene #10: 'SETD1A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
SETD1A MUTATED	5	5	7
SETD1A WILD-TYPE	22	14	31

'SEH1L MUTATION STATUS' versus 'CN_CNMF'

P value = 0.124 (Fisher's exact test), Q value = 1

Table S81. Gene #11: 'SEH1L MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
SEH1L MUTATED	2	12	2
SEH1L WILD-TYPE	22	33	19

'SEH1L MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0656 (Fisher's exact test), Q value = 1

Table S82. Gene #11: 'SEH1L MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
SEH1L MUTATED	3	11	3
SEH1L WILD-TYPE	28	24	21

'SEH1L MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0493 (Fisher's exact test), Q value = 1

Table S83. Gene #11: 'SEH1L MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
SEH1L MUTATED	4	6	7
SEH1L WILD-TYPE	36	19	12

Figure S9. Get High-res Image Gene #11: 'SEH1L MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

'SEH1L MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00876 (Fisher's exact test), Q value = 1

Table S84. Gene #11: 'SEH1L MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
SEH1L MUTATED	1	10	6
SEH1L WILD-TYPE	0	21	46

Figure S10. Get High-res Image Gene #11: 'SEH1L MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'SEH1L MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00474 (Fisher's exact test), Q value = 1

Table S85. Gene #11: 'SEH1L MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
SEH1L MUTATED	1	6	5	5
SEH1L WILD-TYPE	30	14	6	17

Figure S11. Get High-res Image Gene #11: 'SEH1L MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

'SEH1L MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0811 (Fisher's exact test), Q value = 1

Table S86. Gene #11: 'SEH1L MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
SEH1L MUTATED	4	6	7
SEH1L WILD-TYPE	33	10	24

'SEH1L MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0251 (Fisher's exact test), Q value = 1

Table S87. Gene #11: 'SEH1L MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
SEH1L MUTATED	3	7	7
SEH1L WILD-TYPE	35	13	19

Figure S12. Get High-res Image Gene #11: 'SEH1L MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

'SEH1L MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0949 (Fisher's exact test), Q value = 1

Table S88. Gene #11: 'SEH1L MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
SEH1L MUTATED	7	6	4
SEH1L WILD-TYPE	20	13	34

'IRS1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.694 (Fisher's exact test), Q value = 1

Table S89. Gene #12: 'IRS1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
IRS1 MUTATED	5	6	3
IRS1 WILD-TYPE	19	39	18

'IRS1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.877 (Fisher's exact test), Q value = 1

Table S90. Gene #12: 'IRS1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
IRS1 MUTATED	6	6	3
IRS1 WILD-TYPE	25	29	21

'IRS1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S91. Gene #12: 'IRS1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
IRS1 MUTATED	7	5	3
IRS1 WILD-TYPE	33	20	16

'IRS1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S92. Gene #12: 'IRS1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
IRS1 MUTATED	0	6	9
IRS1 WILD-TYPE	1	25	43

'IRS1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.686 (Fisher's exact test), Q value = 1

Table S93. Gene #12: 'IRS1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
IRS1 MUTATED	6	5	1	3
IRS1 WILD-TYPE	25	15	10	19

'IRS1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.914 (Fisher's exact test), Q value = 1

Table S94. Gene #12: 'IRS1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
IRS1 MUTATED	6	3	6
IRS1 WILD-TYPE	31	13	25

'IRS1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.874 (Fisher's exact test), Q value = 1

Table S95. Gene #12: 'IRS1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
IRS1 MUTATED	6	4	5
IRS1 WILD-TYPE	32	16	21

'IRS1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S96. Gene #12: 'IRS1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
IRS1 MUTATED	5	3	7
IRS1 WILD-TYPE	22	16	31

'PLAUR MUTATION STATUS' versus 'CN_CNMF'

P value = 0.306 (Fisher's exact test), Q value = 1

Table S97. Gene #13: 'PLAUR MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
PLAUR MUTATED	1	5	0
PLAUR WILD-TYPE	23	40	21

'PLAUR MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.877 (Fisher's exact test), Q value = 1

Table S98. Gene #13: 'PLAUR MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
PLAUR MUTATED	2	3	1
PLAUR WILD-TYPE	29	32	23

'PLAUR MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.848 (Fisher's exact test), Q value = 1

Table S99. Gene #13: 'PLAUR MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
PLAUR MUTATED	2	2	1
PLAUR WILD-TYPE	38	23	18

'PLAUR MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S100. Gene #13: 'PLAUR MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
PLAUR MUTATED	0	2	3
PLAUR WILD-TYPE	1	29	49

'PLAUR MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S101. Gene #13: 'PLAUR MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
PLAUR MUTATED	2	1	1	1
PLAUR WILD-TYPE	29	19	10	21

'PLAUR MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.501 (Fisher's exact test), Q value = 1

Table S102. Gene #13: 'PLAUR MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
PLAUR MUTATED	1	1	3
PLAUR WILD-TYPE	36	15	28

'PLAUR MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S103. Gene #13: 'PLAUR MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
PLAUR MUTATED	2	1	2
PLAUR WILD-TYPE	36	19	24

'PLAUR MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S104. Gene #13: 'PLAUR MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
PLAUR MUTATED	2	1	2
PLAUR WILD-TYPE	25	18	36

'TERF1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00978 (Fisher's exact test), Q value = 1

Table S105. Gene #14: 'TERF1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
TERF1 MUTATED	4	0	1
TERF1 WILD-TYPE	20	45	20

Figure S13. Get High-res Image Gene #14: 'TERF1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'TERF1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0325 (Fisher's exact test), Q value = 1

Table S106. Gene #14: 'TERF1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
TERF1 MUTATED	5	1	0
TERF1 WILD-TYPE	26	34	24

Figure S14. Get High-res Image Gene #14: 'TERF1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'TERF1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S107. Gene #14: 'TERF1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
TERF1 MUTATED	3	2	1
TERF1 WILD-TYPE	37	23	18

'TERF1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.446 (Fisher's exact test), Q value = 1

Table S108. Gene #14: 'TERF1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
TERF1 MUTATED	0	1	5
TERF1 WILD-TYPE	1	30	47

'TERF1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.616 (Fisher's exact test), Q value = 1

Table S109. Gene #14: 'TERF1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
TERF1 MUTATED	4	1	0	1
TERF1 WILD-TYPE	27	19	11	21

'TERF1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.482 (Fisher's exact test), Q value = 1

Table S110. Gene #14: 'TERF1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
TERF1 MUTATED	4	0	2
TERF1 WILD-TYPE	33	16	29

'TERF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.656 (Fisher's exact test), Q value = 1

Table S111. Gene #14: 'TERF1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
TERF1 MUTATED	4	1	1
TERF1 WILD-TYPE	34	19	25

'TERF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.473 (Fisher's exact test), Q value = 1

Table S112. Gene #14: 'TERF1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
TERF1 MUTATED	2	0	4
TERF1 WILD-TYPE	25	19	34

'PDILT MUTATION STATUS' versus 'CN_CNMF'

P value = 0.405 (Fisher's exact test), Q value = 1

Table S113. Gene #15: 'PDILT MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
PDILT MUTATED	1	7	3
PDILT WILD-TYPE	23	38	18

'PDILT MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S114. Gene #15: 'PDILT MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
PDILT MUTATED	4	4	3
PDILT WILD-TYPE	27	31	21

'PDILT MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.703 (Fisher's exact test), Q value = 1

Table S115. Gene #15: 'PDILT MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
PDILT MUTATED	6	2	3
PDILT WILD-TYPE	34	23	16

'PDILT MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0783 (Fisher's exact test), Q value = 1

Table S116. Gene #15: 'PDILT MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
PDILT MUTATED	1	5	5
PDILT WILD-TYPE	0	26	47

'PDILT MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.834 (Fisher's exact test), Q value = 1

Table S117. Gene #15: 'PDILT MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
PDILT MUTATED	3	3	2	3
PDILT WILD-TYPE	28	17	9	19

'PDILT MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.582 (Fisher's exact test), Q value = 1

Table S118. Gene #15: 'PDILT MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
PDILT MUTATED	5	3	3
PDILT WILD-TYPE	32	13	28

'PDILT MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.92 (Fisher's exact test), Q value = 1

Table S119. Gene #15: 'PDILT MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
PDILT MUTATED	5	2	4
PDILT WILD-TYPE	33	18	22

'PDILT MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.919 (Fisher's exact test), Q value = 1

Table S120. Gene #15: 'PDILT MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
PDILT MUTATED	3	3	5
PDILT WILD-TYPE	24	16	33

'CUX2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.28 (Fisher's exact test), Q value = 1

Table S121. Gene #16: 'CUX2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
CUX2 MUTATED	5	5	1
CUX2 WILD-TYPE	19	40	20

'CUX2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.721 (Fisher's exact test), Q value = 1

Table S122. Gene #16: 'CUX2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
CUX2 MUTATED	5	4	2
CUX2 WILD-TYPE	26	31	22

'CUX2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.703 (Fisher's exact test), Q value = 1

Table S123. Gene #16: 'CUX2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
CUX2 MUTATED	6	2	3
CUX2 WILD-TYPE	34	23	16

'CUX2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.137 (Fisher's exact test), Q value = 1

Table S124. Gene #16: 'CUX2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
CUX2 MUTATED	1	3	7
CUX2 WILD-TYPE	0	28	45

'CUX2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.884 (Fisher's exact test), Q value = 1

Table S125. Gene #16: 'CUX2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
CUX2 MUTATED	4	2	1	4
CUX2 WILD-TYPE	27	18	10	18

'CUX2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.839 (Fisher's exact test), Q value = 1

Table S126. Gene #16: 'CUX2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
CUX2 MUTATED	6	2	3
CUX2 WILD-TYPE	31	14	28

'CUX2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S127. Gene #16: 'CUX2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
CUX2 MUTATED	5	3	3
CUX2 WILD-TYPE	33	17	23

'CUX2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.842 (Fisher's exact test), Q value = 1

Table S128. Gene #16: 'CUX2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
CUX2 MUTATED	3	2	6
CUX2 WILD-TYPE	24	17	32

'KRT73 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.9 (Fisher's exact test), Q value = 1

Table S129. Gene #17: 'KRT73 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
KRT73 MUTATED	3	4	2
KRT73 WILD-TYPE	21	41	19

'KRT73 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.694 (Fisher's exact test), Q value = 1

Table S130. Gene #17: 'KRT73 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
KRT73 MUTATED	3	3	4
KRT73 WILD-TYPE	28	32	20

'KRT73 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.761 (Fisher's exact test), Q value = 1

Table S131. Gene #17: 'KRT73 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
KRT73 MUTATED	6	2	2
KRT73 WILD-TYPE	34	23	17

'KRT73 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.15 (Fisher's exact test), Q value = 1

Table S132. Gene #17: 'KRT73 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
KRT73 MUTATED	1	3	6
KRT73 WILD-TYPE	0	28	46

'KRT73 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.538 (Fisher's exact test), Q value = 1

Table S133. Gene #17: 'KRT73 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
KRT73 MUTATED	5	2	2	1
KRT73 WILD-TYPE	26	18	9	21

'KRT73 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.745 (Fisher's exact test), Q value = 1

Table S134. Gene #17: 'KRT73 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
KRT73 MUTATED	4	1	5
KRT73 WILD-TYPE	33	15	26

'KRT73 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S135. Gene #17: 'KRT73 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
KRT73 MUTATED	5	2	3
KRT73 WILD-TYPE	33	18	23

'KRT73 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S136. Gene #17: 'KRT73 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
KRT73 MUTATED	3	2	5
KRT73 WILD-TYPE	24	17	33

'TAOK2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.636 (Fisher's exact test), Q value = 1

Table S137. Gene #18: 'TAOK2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
TAOK2 MUTATED	4	12	4
TAOK2 WILD-TYPE	20	33	17

'TAOK2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.435 (Fisher's exact test), Q value = 1

Table S138. Gene #18: 'TAOK2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
TAOK2 MUTATED	8	9	3
TAOK2 WILD-TYPE	23	26	21

'TAOK2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.154 (Fisher's exact test), Q value = 1

Table S139. Gene #18: 'TAOK2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
TAOK2 MUTATED	10	3	7
TAOK2 WILD-TYPE	30	22	12

'TAOK2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.121 (Fisher's exact test), Q value = 1

Table S140. Gene #18: 'TAOK2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
TAOK2 MUTATED	1	9	10
TAOK2 WILD-TYPE	0	22	42

'TAOK2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.342 (Fisher's exact test), Q value = 1

Table S141. Gene #18: 'TAOK2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
TAOK2 MUTATED	6	5	5	4
TAOK2 WILD-TYPE	25	15	6	18

'TAOK2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.736 (Fisher's exact test), Q value = 1

Table S142. Gene #18: 'TAOK2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
TAOK2 MUTATED	8	5	7
TAOK2 WILD-TYPE	29	11	24

'TAOK2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.309 (Fisher's exact test), Q value = 1

Table S143. Gene #18: 'TAOK2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
TAOK2 MUTATED	7	4	9
TAOK2 WILD-TYPE	31	16	17

'TAOK2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.869 (Fisher's exact test), Q value = 1

Table S144. Gene #18: 'TAOK2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
TAOK2 MUTATED	6	4	10
TAOK2 WILD-TYPE	21	15	28

'SORBS2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.189 (Fisher's exact test), Q value = 1

Table S145. Gene #19: 'SORBS2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
SORBS2 MUTATED	2	12	3
SORBS2 WILD-TYPE	22	33	18

'SORBS2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.844 (Fisher's exact test), Q value = 1

Table S146. Gene #19: 'SORBS2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
SORBS2 MUTATED	5	7	5
SORBS2 WILD-TYPE	26	28	19

'SORBS2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.248 (Fisher's exact test), Q value = 1

Table S147. Gene #19: 'SORBS2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
SORBS2 MUTATED	10	2	4
SORBS2 WILD-TYPE	30	23	15

'SORBS2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.206 (Fisher's exact test), Q value = 1

Table S148. Gene #19: 'SORBS2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
SORBS2 MUTATED	1	5	10
SORBS2 WILD-TYPE	0	26	42

'SORBS2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.753 (Fisher's exact test), Q value = 1

Table S149. Gene #19: 'SORBS2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
SORBS2 MUTATED	5	3	2	6
SORBS2 WILD-TYPE	26	17	9	16

'SORBS2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.76 (Fisher's exact test), Q value = 1

Table S150. Gene #19: 'SORBS2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
SORBS2 MUTATED	7	4	5
SORBS2 WILD-TYPE	30	12	26

'SORBS2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.79 (Fisher's exact test), Q value = 1

Table S151. Gene #19: 'SORBS2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
SORBS2 MUTATED	7	3	6
SORBS2 WILD-TYPE	31	17	20

'SORBS2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.248 (Fisher's exact test), Q value = 1

Table S152. Gene #19: 'SORBS2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
SORBS2 MUTATED	3	6	7
SORBS2 WILD-TYPE	24	13	31

'ATG16L2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.423 (Fisher's exact test), Q value = 1

Table S153. Gene #20: 'ATG16L2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
ATG16L2 MUTATED	0	4	1
ATG16L2 WILD-TYPE	24	41	20

'ATG16L2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.254 (Fisher's exact test), Q value = 1

Table S154. Gene #20: 'ATG16L2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
ATG16L2 MUTATED	0	3	2
ATG16L2 WILD-TYPE	31	32	22

'ATG16L2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.134 (Fisher's exact test), Q value = 1

Table S155. Gene #20: 'ATG16L2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
ATG16L2 MUTATED	1	1	3
ATG16L2 WILD-TYPE	39	24	16

'ATG16L2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.118 (Fisher's exact test), Q value = 1

Table S156. Gene #20: 'ATG16L2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
ATG16L2 MUTATED	0	4	1
ATG16L2 WILD-TYPE	1	27	51

'ATG16L2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.335 (Fisher's exact test), Q value = 1

Table S157. Gene #20: 'ATG16L2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
ATG16L2 MUTATED	1	1	2	1
ATG16L2 WILD-TYPE	30	19	9	21

'ATG16L2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0989 (Fisher's exact test), Q value = 1

Table S158. Gene #20: 'ATG16L2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
ATG16L2 MUTATED	1	3	1
ATG16L2 WILD-TYPE	36	13	30

'ATG16L2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.433 (Fisher's exact test), Q value = 1

Table S159. Gene #20: 'ATG16L2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
ATG16L2 MUTATED	1	1	3
ATG16L2 WILD-TYPE	37	19	23

'ATG16L2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.141 (Fisher's exact test), Q value = 1

Table S160. Gene #20: 'ATG16L2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
ATG16L2 MUTATED	1	3	1
ATG16L2 WILD-TYPE	26	16	37

'PTCD1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.591 (Fisher's exact test), Q value = 1

Table S161. Gene #21: 'PTCD1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
PTCD1 MUTATED	3	3	1
PTCD1 WILD-TYPE	21	42	20

'PTCD1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.729 (Fisher's exact test), Q value = 1

Table S162. Gene #21: 'PTCD1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
PTCD1 MUTATED	3	4	1
PTCD1 WILD-TYPE	28	31	23

'PTCD1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.626 (Fisher's exact test), Q value = 1

Table S163. Gene #21: 'PTCD1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
PTCD1 MUTATED	3	2	3
PTCD1 WILD-TYPE	37	23	16

'PTCD1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.515 (Fisher's exact test), Q value = 1

Table S164. Gene #21: 'PTCD1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
PTCD1 MUTATED	0	4	4
PTCD1 WILD-TYPE	1	27	48

'PTCD1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.779 (Fisher's exact test), Q value = 1

Table S165. Gene #21: 'PTCD1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
PTCD1 MUTATED	2	3	1	2
PTCD1 WILD-TYPE	29	17	10	20

'PTCD1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.489 (Fisher's exact test), Q value = 1

Table S166. Gene #21: 'PTCD1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
PTCD1 MUTATED	4	0	4
PTCD1 WILD-TYPE	33	16	27

'PTCD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.637 (Fisher's exact test), Q value = 1

Table S167. Gene #21: 'PTCD1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
PTCD1 MUTATED	3	3	2
PTCD1 WILD-TYPE	35	17	24

'PTCD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.243 (Fisher's exact test), Q value = 1

Table S168. Gene #21: 'PTCD1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
PTCD1 MUTATED	4	0	4
PTCD1 WILD-TYPE	23	19	34

'FAM198B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.54 (Fisher's exact test), Q value = 1

Table S169. Gene #22: 'FAM198B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
FAM198B MUTATED	3	2	1
FAM198B WILD-TYPE	21	43	20

'FAM198B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.023 (Fisher's exact test), Q value = 1

Table S170. Gene #22: 'FAM198B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
FAM198B MUTATED	2	0	4
FAM198B WILD-TYPE	29	35	20

Figure S15. Get High-res Image Gene #22: 'FAM198B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'FAM198B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.219 (Fisher's exact test), Q value = 1

Table S171. Gene #22: 'FAM198B MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
FAM198B MUTATED	4	0	2
FAM198B WILD-TYPE	36	25	17

'FAM198B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.048 (Fisher's exact test), Q value = 1

Table S172. Gene #22: 'FAM198B MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
FAM198B MUTATED	1	1	4
FAM198B WILD-TYPE	0	30	48

Figure S16. Get High-res Image Gene #22: 'FAM198B MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'FAM198B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.836 (Fisher's exact test), Q value = 1

Table S173. Gene #22: 'FAM198B MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
FAM198B MUTATED	3	1	0	2
FAM198B WILD-TYPE	28	19	11	20

'FAM198B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.563 (Fisher's exact test), Q value = 1

Table S174. Gene #22: 'FAM198B MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
FAM198B MUTATED	4	1	1
FAM198B WILD-TYPE	33	15	30

'FAM198B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S175. Gene #22: 'FAM198B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
FAM198B MUTATED	3	1	2
FAM198B WILD-TYPE	35	19	24

'FAM198B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.566 (Fisher's exact test), Q value = 1

Table S176. Gene #22: 'FAM198B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
FAM198B MUTATED	1	1	4
FAM198B WILD-TYPE	26	18	34

'NDEL1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.504 (Fisher's exact test), Q value = 1

Table S177. Gene #23: 'NDEL1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
NDEL1 MUTATED	1	4	0
NDEL1 WILD-TYPE	23	41	21

'NDEL1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.733 (Fisher's exact test), Q value = 1

Table S178. Gene #23: 'NDEL1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
NDEL1 MUTATED	1	3	1
NDEL1 WILD-TYPE	30	32	23

'NDEL1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.000377 (Fisher's exact test), Q value = 1

Table S179. Gene #23: 'NDEL1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
NDEL1 MUTATED	0	0	5
NDEL1 WILD-TYPE	40	25	14

Figure S17. Get High-res Image Gene #23: 'NDEL1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

'NDEL1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.118 (Fisher's exact test), Q value = 1

Table S180. Gene #23: 'NDEL1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
NDEL1 MUTATED	0	4	1
NDEL1 WILD-TYPE	1	27	51

'NDEL1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0749 (Fisher's exact test), Q value = 1

Table S181. Gene #23: 'NDEL1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
NDEL1 MUTATED	0	1	2	2
NDEL1 WILD-TYPE	31	19	9	20

'NDEL1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0989 (Fisher's exact test), Q value = 1

Table S182. Gene #23: 'NDEL1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
NDEL1 MUTATED	1	3	1
NDEL1 WILD-TYPE	36	13	30

'NDEL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0224 (Fisher's exact test), Q value = 1

Table S183. Gene #23: 'NDEL1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
NDEL1 MUTATED	0	1	4
NDEL1 WILD-TYPE	38	19	22

Figure S18. Get High-res Image Gene #23: 'NDEL1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

'NDEL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.141 (Fisher's exact test), Q value = 1

Table S184. Gene #23: 'NDEL1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
NDEL1 MUTATED	1	3	1
NDEL1 WILD-TYPE	26	16	37

'NFIL3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.116 (Fisher's exact test), Q value = 1

Table S185. Gene #24: 'NFIL3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
NFIL3 MUTATED	3	8	0
NFIL3 WILD-TYPE	21	37	21

'NFIL3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.468 (Fisher's exact test), Q value = 1

Table S186. Gene #24: 'NFIL3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
NFIL3 MUTATED	2	6	3
NFIL3 WILD-TYPE	29	29	21

'NFIL3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.84 (Fisher's exact test), Q value = 1

Table S187. Gene #24: 'NFIL3 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
NFIL3 MUTATED	5	4	2
NFIL3 WILD-TYPE	35	21	17

'NFIL3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0783 (Fisher's exact test), Q value = 1

Table S188. Gene #24: 'NFIL3 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
NFIL3 MUTATED	1	5	5
NFIL3 WILD-TYPE	0	26	47

'NFIL3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.414 (Fisher's exact test), Q value = 1

Table S189. Gene #24: 'NFIL3 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
NFIL3 MUTATED	4	4	2	1
NFIL3 WILD-TYPE	27	16	9	21

'NFIL3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.645 (Fisher's exact test), Q value = 1

Table S190. Gene #24: 'NFIL3 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
NFIL3 MUTATED	4	3	4
NFIL3 WILD-TYPE	33	13	27

'NFIL3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.647 (Fisher's exact test), Q value = 1

Table S191. Gene #24: 'NFIL3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
NFIL3 MUTATED	4	4	3
NFIL3 WILD-TYPE	34	16	23

'NFIL3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S192. Gene #24: 'NFIL3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
NFIL3 MUTATED	4	2	5
NFIL3 WILD-TYPE	23	17	33

'ATP13A3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.448 (Fisher's exact test), Q value = 1

Table S193. Gene #25: 'ATP13A3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
ATP13A3 MUTATED	3	4	4
ATP13A3 WILD-TYPE	21	41	17

'ATP13A3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.721 (Fisher's exact test), Q value = 1

Table S194. Gene #25: 'ATP13A3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
ATP13A3 MUTATED	5	4	2
ATP13A3 WILD-TYPE	26	31	22

'ATP13A3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.703 (Fisher's exact test), Q value = 1

Table S195. Gene #25: 'ATP13A3 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
ATP13A3 MUTATED	6	2	3
ATP13A3 WILD-TYPE	34	23	16

'ATP13A3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.587 (Fisher's exact test), Q value = 1

Table S196. Gene #25: 'ATP13A3 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
ATP13A3 MUTATED	0	3	8
ATP13A3 WILD-TYPE	1	28	44

'ATP13A3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S197. Gene #25: 'ATP13A3 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
ATP13A3 MUTATED	4	3	1	3
ATP13A3 WILD-TYPE	27	17	10	19

'ATP13A3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0814 (Fisher's exact test), Q value = 1

Table S198. Gene #25: 'ATP13A3 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
ATP13A3 MUTATED	8	0	3
ATP13A3 WILD-TYPE	29	16	28

'ATP13A3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.843 (Fisher's exact test), Q value = 1

Table S199. Gene #25: 'ATP13A3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
ATP13A3 MUTATED	6	2	3
ATP13A3 WILD-TYPE	32	18	23

'ATP13A3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0663 (Fisher's exact test), Q value = 1

Table S200. Gene #25: 'ATP13A3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
ATP13A3 MUTATED	3	0	8
ATP13A3 WILD-TYPE	24	19	30

'IPP MUTATION STATUS' versus 'CN_CNMF'

P value = 0.391 (Fisher's exact test), Q value = 1

Table S201. Gene #26: 'IPP MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
IPP MUTATED	2	10	4
IPP WILD-TYPE	22	35	17

'IPP MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.233 (Fisher's exact test), Q value = 1

Table S202. Gene #26: 'IPP MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
IPP MUTATED	3	9	5
IPP WILD-TYPE	28	26	19

'IPP MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.119 (Fisher's exact test), Q value = 1

Table S203. Gene #26: 'IPP MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
IPP MUTATED	7	3	7
IPP WILD-TYPE	33	22	12

'IPP MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0311 (Fisher's exact test), Q value = 1

Table S204. Gene #26: 'IPP MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
IPP MUTATED	1	9	7
IPP WILD-TYPE	0	22	45

Figure S19. Get High-res Image Gene #26: 'IPP MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'IPP MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.326 (Fisher's exact test), Q value = 1

Table S205. Gene #26: 'IPP MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
IPP MUTATED	4	3	3	7
IPP WILD-TYPE	27	17	8	15

'IPP MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.048 (Fisher's exact test), Q value = 1

Table S206. Gene #26: 'IPP MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
IPP MUTATED	6	7	4
IPP WILD-TYPE	31	9	27

Figure S20. Get High-res Image Gene #26: 'IPP MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'IPP MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.222 (Fisher's exact test), Q value = 1

Table S207. Gene #26: 'IPP MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
IPP MUTATED	7	2	8
IPP WILD-TYPE	31	18	18

'IPP MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0427 (Fisher's exact test), Q value = 1

Table S208. Gene #26: 'IPP MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
IPP MUTATED	4	8	5
IPP WILD-TYPE	23	11	33

Figure S21. Get High-res Image Gene #26: 'IPP MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

'GAS2L2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.448 (Fisher's exact test), Q value = 1

Table S209. Gene #27: 'GAS2L2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
GAS2L2 MUTATED	4	12	7
GAS2L2 WILD-TYPE	20	33	14

'GAS2L2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.772 (Fisher's exact test), Q value = 1

Table S210. Gene #27: 'GAS2L2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
GAS2L2 MUTATED	9	9	5
GAS2L2 WILD-TYPE	22	26	19

'GAS2L2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.671 (Fisher's exact test), Q value = 1

Table S211. Gene #27: 'GAS2L2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
GAS2L2 MUTATED	10	5	6
GAS2L2 WILD-TYPE	30	20	13

'GAS2L2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0795 (Fisher's exact test), Q value = 1

Table S212. Gene #27: 'GAS2L2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
GAS2L2 MUTATED	1	10	10
GAS2L2 WILD-TYPE	0	21	42

'GAS2L2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.807 (Fisher's exact test), Q value = 1

Table S213. Gene #27: 'GAS2L2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
GAS2L2 MUTATED	7	5	4	5
GAS2L2 WILD-TYPE	24	15	7	17

'GAS2L2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.237 (Fisher's exact test), Q value = 1

Table S214. Gene #27: 'GAS2L2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
GAS2L2 MUTATED	6	5	10
GAS2L2 WILD-TYPE	31	11	21

'GAS2L2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.673 (Fisher's exact test), Q value = 1

Table S215. Gene #27: 'GAS2L2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
GAS2L2 MUTATED	9	4	8
GAS2L2 WILD-TYPE	29	16	18

'GAS2L2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.658 (Fisher's exact test), Q value = 1

Table S216. Gene #27: 'GAS2L2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
GAS2L2 MUTATED	7	6	8
GAS2L2 WILD-TYPE	20	13	30

'XRCC2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.837 (Fisher's exact test), Q value = 1

Table S217. Gene #28: 'XRCC2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
XRCC2 MUTATED	2	2	1
XRCC2 WILD-TYPE	22	43	20

'XRCC2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.52 (Fisher's exact test), Q value = 1

Table S218. Gene #28: 'XRCC2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
XRCC2 MUTATED	3	1	1
XRCC2 WILD-TYPE	28	34	23

'XRCC2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S219. Gene #28: 'XRCC2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
XRCC2 MUTATED	3	1	1
XRCC2 WILD-TYPE	37	24	18

'XRCC2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.667 (Fisher's exact test), Q value = 1

Table S220. Gene #28: 'XRCC2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
XRCC2 MUTATED	0	1	4
XRCC2 WILD-TYPE	1	30	48

'XRCC2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.858 (Fisher's exact test), Q value = 1

Table S221. Gene #28: 'XRCC2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
XRCC2 MUTATED	3	1	0	1
XRCC2 WILD-TYPE	28	19	11	21

'XRCC2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.715 (Fisher's exact test), Q value = 1

Table S222. Gene #28: 'XRCC2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
XRCC2 MUTATED	3	0	2
XRCC2 WILD-TYPE	34	16	29

'XRCC2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.247 (Fisher's exact test), Q value = 1

Table S223. Gene #28: 'XRCC2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
XRCC2 MUTATED	3	2	0
XRCC2 WILD-TYPE	35	18	26

'XRCC2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.603 (Fisher's exact test), Q value = 1

Table S224. Gene #28: 'XRCC2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
XRCC2 MUTATED	2	0	3
XRCC2 WILD-TYPE	25	19	35

'ZBTB33 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.54 (Fisher's exact test), Q value = 1

Table S225. Gene #29: 'ZBTB33 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
ZBTB33 MUTATED	3	2	1
ZBTB33 WILD-TYPE	21	43	20

'ZBTB33 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.76 (Fisher's exact test), Q value = 1

Table S226. Gene #29: 'ZBTB33 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
ZBTB33 MUTATED	3	2	1
ZBTB33 WILD-TYPE	28	33	23

'ZBTB33 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.299 (Fisher's exact test), Q value = 1

Table S227. Gene #29: 'ZBTB33 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
ZBTB33 MUTATED	5	1	0
ZBTB33 WILD-TYPE	35	24	19

'ZBTB33 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.446 (Fisher's exact test), Q value = 1

Table S228. Gene #29: 'ZBTB33 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
ZBTB33 MUTATED	0	1	5
ZBTB33 WILD-TYPE	1	30	47

'ZBTB33 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.346 (Fisher's exact test), Q value = 1

Table S229. Gene #29: 'ZBTB33 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
ZBTB33 MUTATED	4	0	1	1
ZBTB33 WILD-TYPE	27	20	10	21

'ZBTB33 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.189 (Fisher's exact test), Q value = 1

Table S230. Gene #29: 'ZBTB33 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
ZBTB33 MUTATED	5	0	1
ZBTB33 WILD-TYPE	32	16	30

'ZBTB33 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.106 (Fisher's exact test), Q value = 1

Table S231. Gene #29: 'ZBTB33 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
ZBTB33 MUTATED	5	1	0
ZBTB33 WILD-TYPE	33	19	26

'ZBTB33 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.256 (Fisher's exact test), Q value = 1

Table S232. Gene #29: 'ZBTB33 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
ZBTB33 MUTATED	1	0	5
ZBTB33 WILD-TYPE	26	19	33

'PTPRF MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0621 (Fisher's exact test), Q value = 1

Table S233. Gene #30: 'PTPRF MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
PTPRF MUTATED	1	12	4
PTPRF WILD-TYPE	23	33	17

'PTPRF MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.15 (Fisher's exact test), Q value = 1

Table S234. Gene #30: 'PTPRF MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
PTPRF MUTATED	3	10	4
PTPRF WILD-TYPE	28	25	20

'PTPRF MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.165 (Fisher's exact test), Q value = 1

Table S235. Gene #30: 'PTPRF MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
PTPRF MUTATED	5	8	4
PTPRF WILD-TYPE	35	17	15

'PTPRF MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0311 (Fisher's exact test), Q value = 1

Table S236. Gene #30: 'PTPRF MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
PTPRF MUTATED	1	9	7
PTPRF WILD-TYPE	0	22	45

Figure S22. Get High-res Image Gene #30: 'PTPRF MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'PTPRF MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.204 (Fisher's exact test), Q value = 1

Table S237. Gene #30: 'PTPRF MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
PTPRF MUTATED	4	7	3	3
PTPRF WILD-TYPE	27	13	8	19

'PTPRF MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0357 (Fisher's exact test), Q value = 1

Table S238. Gene #30: 'PTPRF MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
PTPRF MUTATED	4	2	11
PTPRF WILD-TYPE	33	14	20

Figure S23. Get High-res Image Gene #30: 'PTPRF MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'PTPRF MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.456 (Fisher's exact test), Q value = 1

Table S239. Gene #30: 'PTPRF MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
PTPRF MUTATED	6	6	5
PTPRF WILD-TYPE	32	14	21

'PTPRF MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00811 (Fisher's exact test), Q value = 1

Table S240. Gene #30: 'PTPRF MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
PTPRF MUTATED	11	2	4
PTPRF WILD-TYPE	16	17	34

Figure S24. Get High-res Image Gene #30: 'PTPRF MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

'UBXN6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.659 (Fisher's exact test), Q value = 1

Table S241. Gene #31: 'UBXN6 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
UBXN6 MUTATED	2	6	1
UBXN6 WILD-TYPE	22	39	20

'UBXN6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.292 (Fisher's exact test), Q value = 1

Table S242. Gene #31: 'UBXN6 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
UBXN6 MUTATED	1	5	3
UBXN6 WILD-TYPE	30	30	21

'UBXN6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.733 (Fisher's exact test), Q value = 1

Table S243. Gene #31: 'UBXN6 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
UBXN6 MUTATED	4	2	3
UBXN6 WILD-TYPE	36	23	16

'UBXN6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0359 (Fisher's exact test), Q value = 1

Table S244. Gene #31: 'UBXN6 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
UBXN6 MUTATED	1	5	3
UBXN6 WILD-TYPE	0	26	49

Figure S25. Get High-res Image Gene #31: 'UBXN6 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'UBXN6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.26 (Fisher's exact test), Q value = 1

Table S245. Gene #31: 'UBXN6 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
UBXN6 MUTATED	2	4	2	1
UBXN6 WILD-TYPE	29	16	9	21

'UBXN6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.582 (Fisher's exact test), Q value = 1

Table S246. Gene #31: 'UBXN6 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
UBXN6 MUTATED	3	1	5
UBXN6 WILD-TYPE	34	15	26

'UBXN6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.316 (Fisher's exact test), Q value = 1

Table S247. Gene #31: 'UBXN6 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
UBXN6 MUTATED	2	3	4
UBXN6 WILD-TYPE	36	17	22

'UBXN6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.388 (Fisher's exact test), Q value = 1

Table S248. Gene #31: 'UBXN6 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
UBXN6 MUTATED	5	1	3
UBXN6 WILD-TYPE	22	18	35

'MEPCE MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0959 (Fisher's exact test), Q value = 1

Table S249. Gene #32: 'MEPCE MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
MEPCE MUTATED	4	12	1
MEPCE WILD-TYPE	20	33	20

'MEPCE MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.111 (Fisher's exact test), Q value = 1

Table S250. Gene #32: 'MEPCE MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
MEPCE MUTATED	4	11	3
MEPCE WILD-TYPE	27	24	21

'MEPCE MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.506 (Fisher's exact test), Q value = 1

Table S251. Gene #32: 'MEPCE MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
MEPCE MUTATED	7	5	6
MEPCE WILD-TYPE	33	20	13

'MEPCE MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0523 (Fisher's exact test), Q value = 1

Table S252. Gene #32: 'MEPCE MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
MEPCE MUTATED	1	9	8
MEPCE WILD-TYPE	0	22	44

'MEPCE MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.276 (Fisher's exact test), Q value = 1

Table S253. Gene #32: 'MEPCE MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
MEPCE MUTATED	4	6	4	4
MEPCE WILD-TYPE	27	14	7	18

'MEPCE MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.761 (Fisher's exact test), Q value = 1

Table S254. Gene #32: 'MEPCE MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
MEPCE MUTATED	7	3	8
MEPCE WILD-TYPE	30	13	23

'MEPCE MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.47 (Fisher's exact test), Q value = 1

Table S255. Gene #32: 'MEPCE MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
MEPCE MUTATED	6	5	7
MEPCE WILD-TYPE	32	15	19

'MEPCE MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.416 (Fisher's exact test), Q value = 1

Table S256. Gene #32: 'MEPCE MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
MEPCE MUTATED	8	4	6
MEPCE WILD-TYPE	19	15	32

'CRAT MUTATION STATUS' versus 'CN_CNMF'

P value = 0.306 (Fisher's exact test), Q value = 1

Table S257. Gene #33: 'CRAT MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
CRAT MUTATED	1	5	0
CRAT WILD-TYPE	23	40	21

'CRAT MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0999 (Fisher's exact test), Q value = 1

Table S258. Gene #33: 'CRAT MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
CRAT MUTATED	1	5	0
CRAT WILD-TYPE	30	30	24

'CRAT MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.15 (Fisher's exact test), Q value = 1

Table S259. Gene #33: 'CRAT MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
CRAT MUTATED	1	2	3
CRAT WILD-TYPE	39	23	16

'CRAT MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0697 (Fisher's exact test), Q value = 1

Table S260. Gene #33: 'CRAT MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
CRAT MUTATED	0	5	1
CRAT WILD-TYPE	1	26	51

'CRAT MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0803 (Fisher's exact test), Q value = 1

Table S261. Gene #33: 'CRAT MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
CRAT MUTATED	1	1	3	1
CRAT WILD-TYPE	30	19	8	21

'CRAT MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.127 (Fisher's exact test), Q value = 1

Table S262. Gene #33: 'CRAT MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
CRAT MUTATED	1	3	2
CRAT WILD-TYPE	36	13	29

'CRAT MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.132 (Fisher's exact test), Q value = 1

Table S263. Gene #33: 'CRAT MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
CRAT MUTATED	2	0	4
CRAT WILD-TYPE	36	20	22

'CRAT MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.862 (Fisher's exact test), Q value = 1

Table S264. Gene #33: 'CRAT MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
CRAT MUTATED	2	2	2
CRAT WILD-TYPE	25	17	36

'MBD3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.794 (Fisher's exact test), Q value = 1

Table S265. Gene #34: 'MBD3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
MBD3 MUTATED	3	6	4
MBD3 WILD-TYPE	21	39	17

'MBD3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S266. Gene #34: 'MBD3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
MBD3 MUTATED	5	5	3
MBD3 WILD-TYPE	26	30	21

'MBD3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.241 (Fisher's exact test), Q value = 1

Table S267. Gene #34: 'MBD3 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
MBD3 MUTATED	6	2	5
MBD3 WILD-TYPE	34	23	14

'MBD3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0759 (Fisher's exact test), Q value = 1

Table S268. Gene #34: 'MBD3 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
MBD3 MUTATED	1	6	6
MBD3 WILD-TYPE	0	25	46

'MBD3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.689 (Fisher's exact test), Q value = 1

Table S269. Gene #34: 'MBD3 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
MBD3 MUTATED	3	4	2	4
MBD3 WILD-TYPE	28	16	9	18

'MBD3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.48 (Fisher's exact test), Q value = 1

Table S270. Gene #34: 'MBD3 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
MBD3 MUTATED	5	4	4
MBD3 WILD-TYPE	32	12	27

'MBD3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.54 (Fisher's exact test), Q value = 1

Table S271. Gene #34: 'MBD3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
MBD3 MUTATED	4	4	5
MBD3 WILD-TYPE	34	16	21

'MBD3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S272. Gene #34: 'MBD3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
MBD3 MUTATED	4	3	6
MBD3 WILD-TYPE	23	16	32

'ZNF644 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.194 (Fisher's exact test), Q value = 1

Table S273. Gene #35: 'ZNF644 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
ZNF644 MUTATED	4	5	0
ZNF644 WILD-TYPE	20	40	21

'ZNF644 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S274. Gene #35: 'ZNF644 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
ZNF644 MUTATED	3	4	2
ZNF644 WILD-TYPE	28	31	22

'ZNF644 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S275. Gene #35: 'ZNF644 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
ZNF644 MUTATED	4	3	2
ZNF644 WILD-TYPE	36	22	17

'ZNF644 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0359 (Fisher's exact test), Q value = 1

Table S276. Gene #35: 'ZNF644 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
ZNF644 MUTATED	1	5	3
ZNF644 WILD-TYPE	0	26	49

Figure S26. Get High-res Image Gene #35: 'ZNF644 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'ZNF644 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0656 (Fisher's exact test), Q value = 1

Table S277. Gene #35: 'ZNF644 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
ZNF644 MUTATED	3	5	1	0
ZNF644 WILD-TYPE	28	15	10	22

'ZNF644 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.582 (Fisher's exact test), Q value = 1

Table S278. Gene #35: 'ZNF644 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
ZNF644 MUTATED	3	1	5
ZNF644 WILD-TYPE	34	15	26

'ZNF644 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0888 (Fisher's exact test), Q value = 1

Table S279. Gene #35: 'ZNF644 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
ZNF644 MUTATED	3	5	1
ZNF644 WILD-TYPE	35	15	25

'ZNF644 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.388 (Fisher's exact test), Q value = 1

Table S280. Gene #35: 'ZNF644 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
ZNF644 MUTATED	5	1	3
ZNF644 WILD-TYPE	22	18	35

'NAGPA MUTATION STATUS' versus 'CN_CNMF'

P value = 0.636 (Fisher's exact test), Q value = 1

Table S281. Gene #36: 'NAGPA MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
NAGPA MUTATED	3	3	2
NAGPA WILD-TYPE	21	42	19

'NAGPA MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.656 (Fisher's exact test), Q value = 1

Table S282. Gene #36: 'NAGPA MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
NAGPA MUTATED	3	2	3
NAGPA WILD-TYPE	28	33	21

'NAGPA MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.208 (Fisher's exact test), Q value = 1

Table S283. Gene #36: 'NAGPA MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
NAGPA MUTATED	6	2	0
NAGPA WILD-TYPE	34	23	19

'NAGPA MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00419 (Fisher's exact test), Q value = 1

Table S284. Gene #36: 'NAGPA MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
NAGPA MUTATED	1	0	7
NAGPA WILD-TYPE	0	31	45

Figure S27. Get High-res Image Gene #36: 'NAGPA MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'NAGPA MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.811 (Fisher's exact test), Q value = 1

Table S285. Gene #36: 'NAGPA MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
NAGPA MUTATED	4	2	0	2
NAGPA WILD-TYPE	27	18	11	20

'NAGPA MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.394 (Fisher's exact test), Q value = 1

Table S286. Gene #36: 'NAGPA MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
NAGPA MUTATED	5	0	3
NAGPA WILD-TYPE	32	16	28

'NAGPA MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.112 (Fisher's exact test), Q value = 1

Table S287. Gene #36: 'NAGPA MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
NAGPA MUTATED	5	3	0
NAGPA WILD-TYPE	33	17	26

'NAGPA MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.309 (Fisher's exact test), Q value = 1

Table S288. Gene #36: 'NAGPA MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
NAGPA MUTATED	3	0	5
NAGPA WILD-TYPE	24	19	33

'WWTR1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.335 (Fisher's exact test), Q value = 1

Table S289. Gene #37: 'WWTR1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
WWTR1 MUTATED	5	6	1
WWTR1 WILD-TYPE	19	39	20

'WWTR1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.925 (Fisher's exact test), Q value = 1

Table S290. Gene #37: 'WWTR1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
WWTR1 MUTATED	5	4	3
WWTR1 WILD-TYPE	26	31	21

'WWTR1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.61 (Fisher's exact test), Q value = 1

Table S291. Gene #37: 'WWTR1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
WWTR1 MUTATED	7	2	3
WWTR1 WILD-TYPE	33	23	16

'WWTR1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.147 (Fisher's exact test), Q value = 1

Table S292. Gene #37: 'WWTR1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
WWTR1 MUTATED	1	5	6
WWTR1 WILD-TYPE	0	26	46

'WWTR1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.373 (Fisher's exact test), Q value = 1

Table S293. Gene #37: 'WWTR1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
WWTR1 MUTATED	6	4	1	1
WWTR1 WILD-TYPE	25	16	10	21

'WWTR1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.921 (Fisher's exact test), Q value = 1

Table S294. Gene #37: 'WWTR1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
WWTR1 MUTATED	6	2	4
WWTR1 WILD-TYPE	31	14	27

'WWTR1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.924 (Fisher's exact test), Q value = 1

Table S295. Gene #37: 'WWTR1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
WWTR1 MUTATED	6	3	3
WWTR1 WILD-TYPE	32	17	23

'WWTR1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.924 (Fisher's exact test), Q value = 1

Table S296. Gene #37: 'WWTR1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
WWTR1 MUTATED	4	2	6
WWTR1 WILD-TYPE	23	17	32

'B4GALT2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.337 (Fisher's exact test), Q value = 1

Table S297. Gene #38: 'B4GALT2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
B4GALT2 MUTATED	4	3	3
B4GALT2 WILD-TYPE	20	42	18

'B4GALT2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.247 (Fisher's exact test), Q value = 1

Table S298. Gene #38: 'B4GALT2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
B4GALT2 MUTATED	6	2	2
B4GALT2 WILD-TYPE	25	33	22

'B4GALT2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.18 (Fisher's exact test), Q value = 1

Table S299. Gene #38: 'B4GALT2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
B4GALT2 MUTATED	7	3	0
B4GALT2 WILD-TYPE	33	22	19

'B4GALT2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.39 (Fisher's exact test), Q value = 1

Table S300. Gene #38: 'B4GALT2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
B4GALT2 MUTATED	0	2	8
B4GALT2 WILD-TYPE	1	29	44

'B4GALT2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.157 (Fisher's exact test), Q value = 1

Table S301. Gene #38: 'B4GALT2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
B4GALT2 MUTATED	7	2	0	1
B4GALT2 WILD-TYPE	24	18	11	21

'B4GALT2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.68 (Fisher's exact test), Q value = 1

Table S302. Gene #38: 'B4GALT2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
B4GALT2 MUTATED	6	1	3
B4GALT2 WILD-TYPE	31	15	28

'B4GALT2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.231 (Fisher's exact test), Q value = 1

Table S303. Gene #38: 'B4GALT2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
B4GALT2 MUTATED	7	2	1
B4GALT2 WILD-TYPE	31	18	25

'B4GALT2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.309 (Fisher's exact test), Q value = 1

Table S304. Gene #38: 'B4GALT2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
B4GALT2 MUTATED	2	1	7
B4GALT2 WILD-TYPE	25	18	31

'SGOL2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.28 (Fisher's exact test), Q value = 1

Table S305. Gene #39: 'SGOL2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
SGOL2 MUTATED	5	5	1
SGOL2 WILD-TYPE	19	40	20

'SGOL2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.721 (Fisher's exact test), Q value = 1

Table S306. Gene #39: 'SGOL2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
SGOL2 MUTATED	5	4	2
SGOL2 WILD-TYPE	26	31	22

'SGOL2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.497 (Fisher's exact test), Q value = 1

Table S307. Gene #39: 'SGOL2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
SGOL2 MUTATED	7	3	1
SGOL2 WILD-TYPE	33	22	18

'SGOL2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.137 (Fisher's exact test), Q value = 1

Table S308. Gene #39: 'SGOL2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
SGOL2 MUTATED	1	3	7
SGOL2 WILD-TYPE	0	28	45

'SGOL2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.375 (Fisher's exact test), Q value = 1

Table S309. Gene #39: 'SGOL2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
SGOL2 MUTATED	6	2	2	1
SGOL2 WILD-TYPE	25	18	9	21

'SGOL2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.169 (Fisher's exact test), Q value = 1

Table S310. Gene #39: 'SGOL2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
SGOL2 MUTATED	5	0	6
SGOL2 WILD-TYPE	32	16	25

'SGOL2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.22 (Fisher's exact test), Q value = 1

Table S311. Gene #39: 'SGOL2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
SGOL2 MUTATED	6	4	1
SGOL2 WILD-TYPE	32	16	25

'SGOL2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.125 (Fisher's exact test), Q value = 1

Table S312. Gene #39: 'SGOL2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
SGOL2 MUTATED	4	0	7
SGOL2 WILD-TYPE	23	19	31

'EDC4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.887 (Fisher's exact test), Q value = 1

Table S313. Gene #40: 'EDC4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
EDC4 MUTATED	4	9	5
EDC4 WILD-TYPE	20	36	16

'EDC4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.793 (Fisher's exact test), Q value = 1

Table S314. Gene #40: 'EDC4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
EDC4 MUTATED	5	8	5
EDC4 WILD-TYPE	26	27	19

'EDC4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.9 (Fisher's exact test), Q value = 1

Table S315. Gene #40: 'EDC4 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
EDC4 MUTATED	9	5	3
EDC4 WILD-TYPE	31	20	16

'EDC4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.281 (Fisher's exact test), Q value = 1

Table S316. Gene #40: 'EDC4 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
EDC4 MUTATED	1	6	10
EDC4 WILD-TYPE	0	25	42

'EDC4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.683 (Fisher's exact test), Q value = 1

Table S317. Gene #40: 'EDC4 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
EDC4 MUTATED	5	6	2	4
EDC4 WILD-TYPE	26	14	9	18

'EDC4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.912 (Fisher's exact test), Q value = 1

Table S318. Gene #40: 'EDC4 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
EDC4 MUTATED	7	3	7
EDC4 WILD-TYPE	30	13	24

'EDC4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.877 (Fisher's exact test), Q value = 1

Table S319. Gene #40: 'EDC4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
EDC4 MUTATED	7	5	5
EDC4 WILD-TYPE	31	15	21

'EDC4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.594 (Fisher's exact test), Q value = 1

Table S320. Gene #40: 'EDC4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
EDC4 MUTATED	7	4	6
EDC4 WILD-TYPE	20	15	32

'RAB11FIP5 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S321. Gene #41: 'RAB11FIP5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
RAB11FIP5 MUTATED	2	4	2
RAB11FIP5 WILD-TYPE	22	41	19

'RAB11FIP5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.409 (Fisher's exact test), Q value = 1

Table S322. Gene #41: 'RAB11FIP5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
RAB11FIP5 MUTATED	1	4	3
RAB11FIP5 WILD-TYPE	30	31	21

'RAB11FIP5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.182 (Fisher's exact test), Q value = 1

Table S323. Gene #41: 'RAB11FIP5 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
RAB11FIP5 MUTATED	3	1	4
RAB11FIP5 WILD-TYPE	37	24	15

'RAB11FIP5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.515 (Fisher's exact test), Q value = 1

Table S324. Gene #41: 'RAB11FIP5 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
RAB11FIP5 MUTATED	0	4	4
RAB11FIP5 WILD-TYPE	1	27	48

'RAB11FIP5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.637 (Fisher's exact test), Q value = 1

Table S325. Gene #41: 'RAB11FIP5 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
RAB11FIP5 MUTATED	2	2	2	2
RAB11FIP5 WILD-TYPE	29	18	9	20

'RAB11FIP5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.705 (Fisher's exact test), Q value = 1

Table S326. Gene #41: 'RAB11FIP5 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
RAB11FIP5 MUTATED	4	2	2
RAB11FIP5 WILD-TYPE	33	14	29

'RAB11FIP5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.895 (Fisher's exact test), Q value = 1

Table S327. Gene #41: 'RAB11FIP5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
RAB11FIP5 MUTATED	3	2	3
RAB11FIP5 WILD-TYPE	35	18	23

'RAB11FIP5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S328. Gene #41: 'RAB11FIP5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
RAB11FIP5 MUTATED	2	2	4
RAB11FIP5 WILD-TYPE	25	17	34

'DHRS7B MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S329. Gene #42: 'DHRS7B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
DHRS7B MUTATED	1	3	1
DHRS7B WILD-TYPE	23	42	20

'DHRS7B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S330. Gene #42: 'DHRS7B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
DHRS7B MUTATED	2	2	1
DHRS7B WILD-TYPE	29	33	23

'DHRS7B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.596 (Fisher's exact test), Q value = 1

Table S331. Gene #42: 'DHRS7B MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
DHRS7B MUTATED	3	2	0
DHRS7B WILD-TYPE	37	23	19

'DHRS7B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.667 (Fisher's exact test), Q value = 1

Table S332. Gene #42: 'DHRS7B MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
DHRS7B MUTATED	0	1	4
DHRS7B WILD-TYPE	1	30	48

'DHRS7B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.927 (Fisher's exact test), Q value = 1

Table S333. Gene #42: 'DHRS7B MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
DHRS7B MUTATED	2	1	0	2
DHRS7B WILD-TYPE	29	19	11	20

'DHRS7B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.715 (Fisher's exact test), Q value = 1

Table S334. Gene #42: 'DHRS7B MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
DHRS7B MUTATED	3	0	2
DHRS7B WILD-TYPE	34	16	29

'DHRS7B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.852 (Fisher's exact test), Q value = 1

Table S335. Gene #42: 'DHRS7B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
DHRS7B MUTATED	3	1	1
DHRS7B WILD-TYPE	35	19	25

'DHRS7B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.603 (Fisher's exact test), Q value = 1

Table S336. Gene #42: 'DHRS7B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
DHRS7B MUTATED	2	0	3
DHRS7B WILD-TYPE	25	19	35

'PAK1 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S337. Gene #43: 'PAK1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
PAK1 MUTATED	2	3	1
PAK1 WILD-TYPE	22	42	20

'PAK1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.888 (Fisher's exact test), Q value = 1

Table S338. Gene #43: 'PAK1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
PAK1 MUTATED	3	2	2
PAK1 WILD-TYPE	28	33	22

'PAK1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S339. Gene #43: 'PAK1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
PAK1 MUTATED	4	2	1
PAK1 WILD-TYPE	36	23	18

'PAK1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S340. Gene #43: 'PAK1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
PAK1 MUTATED	0	3	4
PAK1 WILD-TYPE	1	28	48

'PAK1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.9 (Fisher's exact test), Q value = 1

Table S341. Gene #43: 'PAK1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
PAK1 MUTATED	3	2	1	1
PAK1 WILD-TYPE	28	18	10	21

'PAK1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.593 (Fisher's exact test), Q value = 1

Table S342. Gene #43: 'PAK1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
PAK1 MUTATED	2	1	4
PAK1 WILD-TYPE	35	15	27

'PAK1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.885 (Fisher's exact test), Q value = 1

Table S343. Gene #43: 'PAK1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
PAK1 MUTATED	4	1	2
PAK1 WILD-TYPE	34	19	24

'PAK1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S344. Gene #43: 'PAK1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
PAK1 MUTATED	2	2	3
PAK1 WILD-TYPE	25	17	35

'FYN MUTATION STATUS' versus 'CN_CNMF'

P value = 0.43 (Fisher's exact test), Q value = 1

Table S345. Gene #44: 'FYN MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
FYN MUTATED	1	6	1
FYN WILD-TYPE	23	39	20

'FYN MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.409 (Fisher's exact test), Q value = 1

Table S346. Gene #44: 'FYN MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
FYN MUTATED	1	4	3
FYN WILD-TYPE	30	31	21

'FYN MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.16 (Fisher's exact test), Q value = 1

Table S347. Gene #44: 'FYN MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
FYN MUTATED	2	2	4
FYN WILD-TYPE	38	23	15

'FYN MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.224 (Fisher's exact test), Q value = 1

Table S348. Gene #44: 'FYN MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
FYN MUTATED	0	5	3
FYN WILD-TYPE	1	26	49

'FYN MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.327 (Fisher's exact test), Q value = 1

Table S349. Gene #44: 'FYN MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
FYN MUTATED	1	2	2	3
FYN WILD-TYPE	30	18	9	19

'FYN MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.308 (Fisher's exact test), Q value = 1

Table S350. Gene #44: 'FYN MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
FYN MUTATED	2	3	3
FYN WILD-TYPE	35	13	28

'FYN MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.4 (Fisher's exact test), Q value = 1

Table S351. Gene #44: 'FYN MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
FYN MUTATED	2	3	3
FYN WILD-TYPE	36	17	23

'FYN MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.399 (Fisher's exact test), Q value = 1

Table S352. Gene #44: 'FYN MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
FYN MUTATED	3	3	2
FYN WILD-TYPE	24	16	36

'TMCO1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.72 (Fisher's exact test), Q value = 1

Table S353. Gene #45: 'TMCO1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
TMCO1 MUTATED	2	7	3
TMCO1 WILD-TYPE	22	38	18

'TMCO1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.925 (Fisher's exact test), Q value = 1

Table S354. Gene #45: 'TMCO1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
TMCO1 MUTATED	5	4	3
TMCO1 WILD-TYPE	26	31	21

'TMCO1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.779 (Fisher's exact test), Q value = 1

Table S355. Gene #45: 'TMCO1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
TMCO1 MUTATED	7	3	2
TMCO1 WILD-TYPE	33	22	17

'TMCO1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.185 (Fisher's exact test), Q value = 1

Table S356. Gene #45: 'TMCO1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
TMCO1 MUTATED	1	4	7
TMCO1 WILD-TYPE	0	27	45

'TMCO1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0743 (Fisher's exact test), Q value = 1

Table S357. Gene #45: 'TMCO1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
TMCO1 MUTATED	7	3	2	0
TMCO1 WILD-TYPE	24	17	9	22

'TMCO1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S358. Gene #45: 'TMCO1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
TMCO1 MUTATED	5	2	5
TMCO1 WILD-TYPE	32	14	26

'TMCO1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.52 (Fisher's exact test), Q value = 1

Table S359. Gene #45: 'TMCO1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
TMCO1 MUTATED	7	3	2
TMCO1 WILD-TYPE	31	17	24

'TMCO1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.924 (Fisher's exact test), Q value = 1

Table S360. Gene #45: 'TMCO1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
TMCO1 MUTATED	4	2	6
TMCO1 WILD-TYPE	23	17	32

'NPNT MUTATION STATUS' versus 'CN_CNMF'

P value = 0.56 (Fisher's exact test), Q value = 1

Table S361. Gene #46: 'NPNT MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
NPNT MUTATED	4	5	1
NPNT WILD-TYPE	20	40	20

'NPNT MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.764 (Fisher's exact test), Q value = 1

Table S362. Gene #46: 'NPNT MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
NPNT MUTATED	3	5	2
NPNT WILD-TYPE	28	30	22

'NPNT MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0395 (Fisher's exact test), Q value = 1

Table S363. Gene #46: 'NPNT MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
NPNT MUTATED	6	0	4
NPNT WILD-TYPE	34	25	15

Figure S28. Get High-res Image Gene #46: 'NPNT MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

'NPNT MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S364. Gene #46: 'NPNT MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
NPNT MUTATED	0	4	6
NPNT WILD-TYPE	1	27	46

'NPNT MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.345 (Fisher's exact test), Q value = 1

Table S365. Gene #46: 'NPNT MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
NPNT MUTATED	5	1	0	4
NPNT WILD-TYPE	26	19	11	18

'NPNT MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.128 (Fisher's exact test), Q value = 1

Table S366. Gene #46: 'NPNT MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
NPNT MUTATED	6	3	1
NPNT WILD-TYPE	31	13	30

'NPNT MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.626 (Fisher's exact test), Q value = 1

Table S367. Gene #46: 'NPNT MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
NPNT MUTATED	5	1	4
NPNT WILD-TYPE	33	19	22

'NPNT MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.211 (Fisher's exact test), Q value = 1

Table S368. Gene #46: 'NPNT MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
NPNT MUTATED	1	4	5
NPNT WILD-TYPE	26	15	33

'ERF MUTATION STATUS' versus 'CN_CNMF'

P value = 0.767 (Fisher's exact test), Q value = 1

Table S369. Gene #47: 'ERF MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
ERF MUTATED	3	9	4
ERF WILD-TYPE	21	36	17

'ERF MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.591 (Fisher's exact test), Q value = 1

Table S370. Gene #47: 'ERF MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
ERF MUTATED	4	8	4
ERF WILD-TYPE	27	27	20

'ERF MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.867 (Fisher's exact test), Q value = 1

Table S371. Gene #47: 'ERF MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
ERF MUTATED	8	4	4
ERF WILD-TYPE	32	21	15

'ERF MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0526 (Fisher's exact test), Q value = 1

Table S372. Gene #47: 'ERF MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
ERF MUTATED	1	8	7
ERF WILD-TYPE	0	23	45

'ERF MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.527 (Fisher's exact test), Q value = 1

Table S373. Gene #47: 'ERF MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
ERF MUTATED	4	6	2	4
ERF WILD-TYPE	27	14	9	18

'ERF MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.86 (Fisher's exact test), Q value = 1

Table S374. Gene #47: 'ERF MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
ERF MUTATED	6	3	7
ERF WILD-TYPE	31	13	24

'ERF MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.3 (Fisher's exact test), Q value = 1

Table S375. Gene #47: 'ERF MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
ERF MUTATED	5	6	5
ERF WILD-TYPE	33	14	21

'ERF MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.536 (Fisher's exact test), Q value = 1

Table S376. Gene #47: 'ERF MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
ERF MUTATED	7	3	6
ERF WILD-TYPE	20	16	32

'SLC24A1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.3 (Fisher's exact test), Q value = 1

Table S377. Gene #48: 'SLC24A1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
SLC24A1 MUTATED	1	7	1
SLC24A1 WILD-TYPE	23	38	20

'SLC24A1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.263 (Fisher's exact test), Q value = 1

Table S378. Gene #48: 'SLC24A1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
SLC24A1 MUTATED	2	6	1
SLC24A1 WILD-TYPE	29	29	23

'SLC24A1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.66 (Fisher's exact test), Q value = 1

Table S379. Gene #48: 'SLC24A1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
SLC24A1 MUTATED	3	3	3
SLC24A1 WILD-TYPE	37	22	16

'SLC24A1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00626 (Fisher's exact test), Q value = 1

Table S380. Gene #48: 'SLC24A1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
SLC24A1 MUTATED	1	6	2
SLC24A1 WILD-TYPE	0	25	50

Figure S29. Get High-res Image Gene #48: 'SLC24A1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'SLC24A1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0245 (Fisher's exact test), Q value = 1

Table S381. Gene #48: 'SLC24A1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
SLC24A1 MUTATED	2	4	3	0
SLC24A1 WILD-TYPE	29	16	8	22

Figure S30. Get High-res Image Gene #48: 'SLC24A1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

'SLC24A1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.341 (Fisher's exact test), Q value = 1

Table S382. Gene #48: 'SLC24A1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
SLC24A1 MUTATED	2	2	5
SLC24A1 WILD-TYPE	35	14	26

'SLC24A1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0984 (Fisher's exact test), Q value = 1

Table S383. Gene #48: 'SLC24A1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
SLC24A1 MUTATED	2	5	2
SLC24A1 WILD-TYPE	36	15	24

'SLC24A1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.254 (Fisher's exact test), Q value = 1

Table S384. Gene #48: 'SLC24A1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
SLC24A1 MUTATED	5	2	2
SLC24A1 WILD-TYPE	22	17	36

'TULP1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.122 (Fisher's exact test), Q value = 1

Table S385. Gene #49: 'TULP1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
TULP1 MUTATED	4	4	0
TULP1 WILD-TYPE	20	41	21

'TULP1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.614 (Fisher's exact test), Q value = 1

Table S386. Gene #49: 'TULP1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
TULP1 MUTATED	4	4	1
TULP1 WILD-TYPE	27	31	23

'TULP1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0635 (Fisher's exact test), Q value = 1

Table S387. Gene #49: 'TULP1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
TULP1 MUTATED	2	2	5
TULP1 WILD-TYPE	38	23	14

'TULP1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.172 (Fisher's exact test), Q value = 1

Table S388. Gene #49: 'TULP1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
TULP1 MUTATED	0	6	3
TULP1 WILD-TYPE	1	25	49

'TULP1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.319 (Fisher's exact test), Q value = 1

Table S389. Gene #49: 'TULP1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
TULP1 MUTATED	2	2	3	2
TULP1 WILD-TYPE	29	18	8	20

'TULP1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.148 (Fisher's exact test), Q value = 1

Table S390. Gene #49: 'TULP1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
TULP1 MUTATED	3	4	2
TULP1 WILD-TYPE	34	12	29

'TULP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.204 (Fisher's exact test), Q value = 1

Table S391. Gene #49: 'TULP1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
TULP1 MUTATED	2	2	5
TULP1 WILD-TYPE	36	18	21

'TULP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.285 (Fisher's exact test), Q value = 1

Table S392. Gene #49: 'TULP1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
TULP1 MUTATED	2	4	3
TULP1 WILD-TYPE	25	15	35

'BMP2K MUTATION STATUS' versus 'CN_CNMF'

P value = 0.284 (Fisher's exact test), Q value = 1

Table S393. Gene #50: 'BMP2K MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
BMP2K MUTATED	3	9	1
BMP2K WILD-TYPE	21	36	20

'BMP2K MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.693 (Fisher's exact test), Q value = 1

Table S394. Gene #50: 'BMP2K MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
BMP2K MUTATED	4	7	3
BMP2K WILD-TYPE	27	28	21

'BMP2K MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.259 (Fisher's exact test), Q value = 1

Table S395. Gene #50: 'BMP2K MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
BMP2K MUTATED	4	6	4
BMP2K WILD-TYPE	36	19	15

'BMP2K MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0581 (Fisher's exact test), Q value = 1

Table S396. Gene #50: 'BMP2K MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
BMP2K MUTATED	1	7	6
BMP2K WILD-TYPE	0	24	46

'BMP2K MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.366 (Fisher's exact test), Q value = 1

Table S397. Gene #50: 'BMP2K MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
BMP2K MUTATED	4	5	3	2
BMP2K WILD-TYPE	27	15	8	20

'BMP2K MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.159 (Fisher's exact test), Q value = 1

Table S398. Gene #50: 'BMP2K MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
BMP2K MUTATED	3	4	7
BMP2K WILD-TYPE	34	12	24

'BMP2K MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.932 (Fisher's exact test), Q value = 1

Table S399. Gene #50: 'BMP2K MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
BMP2K MUTATED	6	3	5
BMP2K WILD-TYPE	32	17	21

'BMP2K MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.655 (Fisher's exact test), Q value = 1

Table S400. Gene #50: 'BMP2K MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
BMP2K MUTATED	6	3	5
BMP2K WILD-TYPE	21	16	33

'FADS2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.308 (Fisher's exact test), Q value = 1

Table S401. Gene #51: 'FADS2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
FADS2 MUTATED	1	8	3
FADS2 WILD-TYPE	23	37	18

'FADS2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.866 (Fisher's exact test), Q value = 1

Table S402. Gene #51: 'FADS2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
FADS2 MUTATED	4	6	3
FADS2 WILD-TYPE	27	29	21

'FADS2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00072 (Fisher's exact test), Q value = 1

Table S403. Gene #51: 'FADS2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
FADS2 MUTATED	2	2	8
FADS2 WILD-TYPE	38	23	11

Figure S31. Get High-res Image Gene #51: 'FADS2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

'FADS2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0869 (Fisher's exact test), Q value = 1

Table S404. Gene #51: 'FADS2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
FADS2 MUTATED	0	8	4
FADS2 WILD-TYPE	1	23	48

'FADS2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.101 (Fisher's exact test), Q value = 1

Table S405. Gene #51: 'FADS2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
FADS2 MUTATED	2	2	4	4
FADS2 WILD-TYPE	29	18	7	18

'FADS2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.131 (Fisher's exact test), Q value = 1

Table S406. Gene #51: 'FADS2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
FADS2 MUTATED	4	5	3
FADS2 WILD-TYPE	33	11	28

'FADS2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0274 (Fisher's exact test), Q value = 1

Table S407. Gene #51: 'FADS2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
FADS2 MUTATED	3	1	8
FADS2 WILD-TYPE	35	19	18

Figure S32. Get High-res Image Gene #51: 'FADS2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

'FADS2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.241 (Fisher's exact test), Q value = 1

Table S408. Gene #51: 'FADS2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
FADS2 MUTATED	3	5	4
FADS2 WILD-TYPE	24	14	34

'SMG7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.889 (Fisher's exact test), Q value = 1

Table S409. Gene #52: 'SMG7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
SMG7 MUTATED	2	5	1
SMG7 WILD-TYPE	22	40	20

'SMG7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S410. Gene #52: 'SMG7 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
SMG7 MUTATED	3	3	2
SMG7 WILD-TYPE	28	32	22

'SMG7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.712 (Fisher's exact test), Q value = 1

Table S411. Gene #52: 'SMG7 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
SMG7 MUTATED	5	2	1
SMG7 WILD-TYPE	35	23	18

'SMG7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.11 (Fisher's exact test), Q value = 1

Table S412. Gene #52: 'SMG7 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
SMG7 MUTATED	1	2	5
SMG7 WILD-TYPE	0	29	47

'SMG7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.95 (Fisher's exact test), Q value = 1

Table S413. Gene #52: 'SMG7 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
SMG7 MUTATED	4	1	1	2
SMG7 WILD-TYPE	27	19	10	20

'SMG7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S414. Gene #52: 'SMG7 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
SMG7 MUTATED	4	1	3
SMG7 WILD-TYPE	33	15	28

'SMG7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.507 (Fisher's exact test), Q value = 1

Table S415. Gene #52: 'SMG7 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
SMG7 MUTATED	5	2	1
SMG7 WILD-TYPE	33	18	25

'SMG7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.802 (Fisher's exact test), Q value = 1

Table S416. Gene #52: 'SMG7 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
SMG7 MUTATED	3	1	4
SMG7 WILD-TYPE	24	18	34

'SLC39A5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.253 (Fisher's exact test), Q value = 1

Table S417. Gene #53: 'SLC39A5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
SLC39A5 MUTATED	1	8	2
SLC39A5 WILD-TYPE	23	37	19

'SLC39A5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.214 (Fisher's exact test), Q value = 1

Table S418. Gene #53: 'SLC39A5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
SLC39A5 MUTATED	2	7	2
SLC39A5 WILD-TYPE	29	28	22

'SLC39A5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.332 (Fisher's exact test), Q value = 1

Table S419. Gene #53: 'SLC39A5 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
SLC39A5 MUTATED	3	5	3
SLC39A5 WILD-TYPE	37	20	16

'SLC39A5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.21 (Fisher's exact test), Q value = 1

Table S420. Gene #53: 'SLC39A5 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
SLC39A5 MUTATED	0	7	4
SLC39A5 WILD-TYPE	1	24	48

'SLC39A5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00397 (Fisher's exact test), Q value = 1

Table S421. Gene #53: 'SLC39A5 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
SLC39A5 MUTATED	0	4	4	3
SLC39A5 WILD-TYPE	31	16	7	19

Figure S33. Get High-res Image Gene #53: 'SLC39A5 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

'SLC39A5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.401 (Fisher's exact test), Q value = 1

Table S422. Gene #53: 'SLC39A5 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
SLC39A5 MUTATED	3	2	6
SLC39A5 WILD-TYPE	34	14	25

'SLC39A5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.313 (Fisher's exact test), Q value = 1

Table S423. Gene #53: 'SLC39A5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
SLC39A5 MUTATED	3	4	4
SLC39A5 WILD-TYPE	35	16	22

'SLC39A5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.101 (Fisher's exact test), Q value = 1

Table S424. Gene #53: 'SLC39A5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
SLC39A5 MUTATED	6	3	2
SLC39A5 WILD-TYPE	21	16	36

'MYH10 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0494 (Fisher's exact test), Q value = 1

Table S425. Gene #54: 'MYH10 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
MYH10 MUTATED	3	15	2
MYH10 WILD-TYPE	21	30	19

Figure S34. Get High-res Image Gene #54: 'MYH10 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'MYH10 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0522 (Fisher's exact test), Q value = 1

Table S426. Gene #54: 'MYH10 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
MYH10 MUTATED	4	13	4
MYH10 WILD-TYPE	27	22	20

'MYH10 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.107 (Fisher's exact test), Q value = 1

Table S427. Gene #54: 'MYH10 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
MYH10 MUTATED	6	8	7
MYH10 WILD-TYPE	34	17	12

'MYH10 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00857 (Fisher's exact test), Q value = 1

Table S428. Gene #54: 'MYH10 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
MYH10 MUTATED	1	12	8
MYH10 WILD-TYPE	0	19	44

Figure S35. Get High-res Image Gene #54: 'MYH10 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'MYH10 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.624 (Fisher's exact test), Q value = 1

Table S429. Gene #54: 'MYH10 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
MYH10 MUTATED	6	7	3	5
MYH10 WILD-TYPE	25	13	8	17

'MYH10 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0238 (Fisher's exact test), Q value = 1

Table S430. Gene #54: 'MYH10 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
MYH10 MUTATED	4	6	11
MYH10 WILD-TYPE	33	10	20

Figure S36. Get High-res Image Gene #54: 'MYH10 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'MYH10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.119 (Fisher's exact test), Q value = 1

Table S431. Gene #54: 'MYH10 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
MYH10 MUTATED	6	8	7
MYH10 WILD-TYPE	32	12	19

'MYH10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.191 (Fisher's exact test), Q value = 1

Table S432. Gene #54: 'MYH10 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
MYH10 MUTATED	9	6	6
MYH10 WILD-TYPE	18	13	32

'WASF3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.229 (Fisher's exact test), Q value = 1

Table S433. Gene #55: 'WASF3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
WASF3 MUTATED	7	8	2
WASF3 WILD-TYPE	17	37	19

'WASF3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S434. Gene #55: 'WASF3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
WASF3 MUTATED	6	7	4
WASF3 WILD-TYPE	25	28	20

'WASF3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.285 (Fisher's exact test), Q value = 1

Table S435. Gene #55: 'WASF3 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
WASF3 MUTATED	8	3	6
WASF3 WILD-TYPE	32	22	13

'WASF3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.474 (Fisher's exact test), Q value = 1

Table S436. Gene #55: 'WASF3 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
WASF3 MUTATED	0	8	9
WASF3 WILD-TYPE	1	23	43

'WASF3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.506 (Fisher's exact test), Q value = 1

Table S437. Gene #55: 'WASF3 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
WASF3 MUTATED	6	4	4	3
WASF3 WILD-TYPE	25	16	7	19

'WASF3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.697 (Fisher's exact test), Q value = 1

Table S438. Gene #55: 'WASF3 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
WASF3 MUTATED	8	4	5
WASF3 WILD-TYPE	29	12	26

'WASF3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S439. Gene #55: 'WASF3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
WASF3 MUTATED	8	4	5
WASF3 WILD-TYPE	30	16	21

'WASF3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.679 (Fisher's exact test), Q value = 1

Table S440. Gene #55: 'WASF3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
WASF3 MUTATED	4	4	9
WASF3 WILD-TYPE	23	15	29

'GPR25 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.471 (Fisher's exact test), Q value = 1

Table S441. Gene #56: 'GPR25 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
GPR25 MUTATED	4	7	1
GPR25 WILD-TYPE	20	38	20

'GPR25 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.331 (Fisher's exact test), Q value = 1

Table S442. Gene #56: 'GPR25 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
GPR25 MUTATED	5	6	1
GPR25 WILD-TYPE	26	29	23

'GPR25 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.662 (Fisher's exact test), Q value = 1

Table S443. Gene #56: 'GPR25 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
GPR25 MUTATED	5	3	4
GPR25 WILD-TYPE	35	22	15

'GPR25 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.068 (Fisher's exact test), Q value = 1

Table S444. Gene #56: 'GPR25 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
GPR25 MUTATED	1	6	5
GPR25 WILD-TYPE	0	25	47

'GPR25 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0335 (Fisher's exact test), Q value = 1

Table S445. Gene #56: 'GPR25 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
GPR25 MUTATED	4	5	3	0
GPR25 WILD-TYPE	27	15	8	22

Figure S37. Get High-res Image Gene #56: 'GPR25 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

'GPR25 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.592 (Fisher's exact test), Q value = 1

Table S446. Gene #56: 'GPR25 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
GPR25 MUTATED	4	2	6
GPR25 WILD-TYPE	33	14	25

'GPR25 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.782 (Fisher's exact test), Q value = 1

Table S447. Gene #56: 'GPR25 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
GPR25 MUTATED	5	4	3
GPR25 WILD-TYPE	33	16	23

'GPR25 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.373 (Fisher's exact test), Q value = 1

Table S448. Gene #56: 'GPR25 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
GPR25 MUTATED	6	2	4
GPR25 WILD-TYPE	21	17	34

'NFAT5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.547 (Fisher's exact test), Q value = 1

Table S449. Gene #57: 'NFAT5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
NFAT5 MUTATED	5	12	3
NFAT5 WILD-TYPE	19	33	18

'NFAT5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.769 (Fisher's exact test), Q value = 1

Table S450. Gene #57: 'NFAT5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
NFAT5 MUTATED	7	9	4
NFAT5 WILD-TYPE	24	26	20

'NFAT5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.154 (Fisher's exact test), Q value = 1

Table S451. Gene #57: 'NFAT5 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
NFAT5 MUTATED	10	3	7
NFAT5 WILD-TYPE	30	22	12

'NFAT5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.223 (Fisher's exact test), Q value = 1

Table S452. Gene #57: 'NFAT5 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
NFAT5 MUTATED	1	8	11
NFAT5 WILD-TYPE	0	23	41

'NFAT5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S453. Gene #57: 'NFAT5 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
NFAT5 MUTATED	7	5	3	5
NFAT5 WILD-TYPE	24	15	8	17

'NFAT5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.809 (Fisher's exact test), Q value = 1

Table S454. Gene #57: 'NFAT5 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
NFAT5 MUTATED	10	3	7
NFAT5 WILD-TYPE	27	13	24

'NFAT5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.819 (Fisher's exact test), Q value = 1

Table S455. Gene #57: 'NFAT5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
NFAT5 MUTATED	8	5	7
NFAT5 WILD-TYPE	30	15	19

'NFAT5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.869 (Fisher's exact test), Q value = 1

Table S456. Gene #57: 'NFAT5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
NFAT5 MUTATED	6	4	10
NFAT5 WILD-TYPE	21	15	28

'FGF10 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.856 (Fisher's exact test), Q value = 1

Table S457. Gene #58: 'FGF10 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
FGF10 MUTATED	4	7	2
FGF10 WILD-TYPE	20	38	19

'FGF10 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.154 (Fisher's exact test), Q value = 1

Table S458. Gene #58: 'FGF10 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
FGF10 MUTATED	2	6	6
FGF10 WILD-TYPE	29	29	18

'FGF10 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.259 (Fisher's exact test), Q value = 1

Table S459. Gene #58: 'FGF10 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
FGF10 MUTATED	4	6	4
FGF10 WILD-TYPE	36	19	15

'FGF10 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.395 (Fisher's exact test), Q value = 1

Table S460. Gene #58: 'FGF10 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
FGF10 MUTATED	0	7	7
FGF10 WILD-TYPE	1	24	45

'FGF10 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.332 (Fisher's exact test), Q value = 1

Table S461. Gene #58: 'FGF10 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
FGF10 MUTATED	5	6	1	2
FGF10 WILD-TYPE	26	14	10	20

'FGF10 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.63 (Fisher's exact test), Q value = 1

Table S462. Gene #58: 'FGF10 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
FGF10 MUTATED	5	2	7
FGF10 WILD-TYPE	32	14	24

'FGF10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.193 (Fisher's exact test), Q value = 1

Table S463. Gene #58: 'FGF10 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
FGF10 MUTATED	5	6	3
FGF10 WILD-TYPE	33	14	23

'FGF10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.362 (Fisher's exact test), Q value = 1

Table S464. Gene #58: 'FGF10 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
FGF10 MUTATED	7	2	5
FGF10 WILD-TYPE	20	17	33

'C19ORF55 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.162 (Fisher's exact test), Q value = 1

Table S465. Gene #59: 'C19ORF55 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
C19ORF55 MUTATED	5	6	7
C19ORF55 WILD-TYPE	19	39	14

'C19ORF55 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0804 (Fisher's exact test), Q value = 1

Table S466. Gene #59: 'C19ORF55 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
C19ORF55 MUTATED	9	3	6
C19ORF55 WILD-TYPE	22	32	18

'C19ORF55 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.611 (Fisher's exact test), Q value = 1

Table S467. Gene #59: 'C19ORF55 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
C19ORF55 MUTATED	10	4	3
C19ORF55 WILD-TYPE	30	21	16

'C19ORF55 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0935 (Fisher's exact test), Q value = 1

Table S468. Gene #59: 'C19ORF55 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
C19ORF55 MUTATED	1	4	12
C19ORF55 WILD-TYPE	0	27	40

'C19ORF55 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.756 (Fisher's exact test), Q value = 1

Table S469. Gene #59: 'C19ORF55 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
C19ORF55 MUTATED	8	4	2	3
C19ORF55 WILD-TYPE	23	16	9	19

'C19ORF55 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.697 (Fisher's exact test), Q value = 1

Table S470. Gene #59: 'C19ORF55 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
C19ORF55 MUTATED	8	4	5
C19ORF55 WILD-TYPE	29	12	26

'C19ORF55 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.726 (Fisher's exact test), Q value = 1

Table S471. Gene #59: 'C19ORF55 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
C19ORF55 MUTATED	9	4	4
C19ORF55 WILD-TYPE	29	16	22

'C19ORF55 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.679 (Fisher's exact test), Q value = 1

Table S472. Gene #59: 'C19ORF55 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
C19ORF55 MUTATED	4	4	9
C19ORF55 WILD-TYPE	23	15	29

'SLC4A3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.85 (Fisher's exact test), Q value = 1

Table S473. Gene #60: 'SLC4A3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
SLC4A3 MUTATED	4	6	2
SLC4A3 WILD-TYPE	20	39	19

'SLC4A3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.228 (Fisher's exact test), Q value = 1

Table S474. Gene #60: 'SLC4A3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
SLC4A3 MUTATED	7	3	2
SLC4A3 WILD-TYPE	24	32	22

'SLC4A3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.61 (Fisher's exact test), Q value = 1

Table S475. Gene #60: 'SLC4A3 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
SLC4A3 MUTATED	7	2	3
SLC4A3 WILD-TYPE	33	23	16

'SLC4A3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.147 (Fisher's exact test), Q value = 1

Table S476. Gene #60: 'SLC4A3 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
SLC4A3 MUTATED	1	5	6
SLC4A3 WILD-TYPE	0	26	46

'SLC4A3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.695 (Fisher's exact test), Q value = 1

Table S477. Gene #60: 'SLC4A3 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
SLC4A3 MUTATED	6	2	2	2
SLC4A3 WILD-TYPE	25	18	9	20

'SLC4A3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S478. Gene #60: 'SLC4A3 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
SLC4A3 MUTATED	5	2	5
SLC4A3 WILD-TYPE	32	14	26

'SLC4A3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.924 (Fisher's exact test), Q value = 1

Table S479. Gene #60: 'SLC4A3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
SLC4A3 MUTATED	6	3	3
SLC4A3 WILD-TYPE	32	17	23

'SLC4A3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.924 (Fisher's exact test), Q value = 1

Table S480. Gene #60: 'SLC4A3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
SLC4A3 MUTATED	4	2	6
SLC4A3 WILD-TYPE	23	17	32

'CEL MUTATION STATUS' versus 'CN_CNMF'

P value = 0.194 (Fisher's exact test), Q value = 1

Table S481. Gene #61: 'CEL MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
CEL MUTATED	4	5	0
CEL WILD-TYPE	20	40	21

'CEL MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S482. Gene #61: 'CEL MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
CEL MUTATED	3	4	2
CEL WILD-TYPE	28	31	22

'CEL MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00302 (Fisher's exact test), Q value = 1

Table S483. Gene #61: 'CEL MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
CEL MUTATED	3	0	6
CEL WILD-TYPE	37	25	13

Figure S38. Get High-res Image Gene #61: 'CEL MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

'CEL MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.36 (Fisher's exact test), Q value = 1

Table S484. Gene #61: 'CEL MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
CEL MUTATED	0	5	4
CEL WILD-TYPE	1	26	48

'CEL MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.642 (Fisher's exact test), Q value = 1

Table S485. Gene #61: 'CEL MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
CEL MUTATED	3	1	2	3
CEL WILD-TYPE	28	19	9	19

'CEL MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.424 (Fisher's exact test), Q value = 1

Table S486. Gene #61: 'CEL MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
CEL MUTATED	4	3	2
CEL WILD-TYPE	33	13	29

'CEL MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.284 (Fisher's exact test), Q value = 1

Table S487. Gene #61: 'CEL MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
CEL MUTATED	3	1	5
CEL WILD-TYPE	35	19	21

'CEL MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.673 (Fisher's exact test), Q value = 1

Table S488. Gene #61: 'CEL MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
CEL MUTATED	2	3	4
CEL WILD-TYPE	25	16	34

'APOBEC4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.425 (Fisher's exact test), Q value = 1

Table S489. Gene #62: 'APOBEC4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
APOBEC4 MUTATED	4	4	1
APOBEC4 WILD-TYPE	20	41	20

'APOBEC4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.908 (Fisher's exact test), Q value = 1

Table S490. Gene #62: 'APOBEC4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
APOBEC4 MUTATED	3	3	3
APOBEC4 WILD-TYPE	28	32	21

'APOBEC4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.541 (Fisher's exact test), Q value = 1

Table S491. Gene #62: 'APOBEC4 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
APOBEC4 MUTATED	6	2	1
APOBEC4 WILD-TYPE	34	23	18

'APOBEC4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.529 (Fisher's exact test), Q value = 1

Table S492. Gene #62: 'APOBEC4 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
APOBEC4 MUTATED	0	2	7
APOBEC4 WILD-TYPE	1	29	45

'APOBEC4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S493. Gene #62: 'APOBEC4 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
APOBEC4 MUTATED	4	2	1	2
APOBEC4 WILD-TYPE	27	18	10	20

'APOBEC4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.471 (Fisher's exact test), Q value = 1

Table S494. Gene #62: 'APOBEC4 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
APOBEC4 MUTATED	6	1	2
APOBEC4 WILD-TYPE	31	15	29

'APOBEC4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.901 (Fisher's exact test), Q value = 1

Table S495. Gene #62: 'APOBEC4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
APOBEC4 MUTATED	5	2	2
APOBEC4 WILD-TYPE	33	18	24

'APOBEC4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.473 (Fisher's exact test), Q value = 1

Table S496. Gene #62: 'APOBEC4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
APOBEC4 MUTATED	2	1	6
APOBEC4 WILD-TYPE	25	18	32

'MED15 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.619 (Fisher's exact test), Q value = 1

Table S497. Gene #63: 'MED15 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
MED15 MUTATED	5	12	7
MED15 WILD-TYPE	19	33	14

'MED15 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.195 (Fisher's exact test), Q value = 1

Table S498. Gene #63: 'MED15 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
MED15 MUTATED	10	11	3
MED15 WILD-TYPE	21	24	21

'MED15 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.124 (Fisher's exact test), Q value = 1

Table S499. Gene #63: 'MED15 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
MED15 MUTATED	10	5	9
MED15 WILD-TYPE	30	20	10

'MED15 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.112 (Fisher's exact test), Q value = 1

Table S500. Gene #63: 'MED15 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
MED15 MUTATED	1	11	12
MED15 WILD-TYPE	0	20	40

'MED15 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.408 (Fisher's exact test), Q value = 1

Table S501. Gene #63: 'MED15 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
MED15 MUTATED	7	7	5	5
MED15 WILD-TYPE	24	13	6	17

'MED15 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.949 (Fisher's exact test), Q value = 1

Table S502. Gene #63: 'MED15 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
MED15 MUTATED	10	5	9
MED15 WILD-TYPE	27	11	22

'MED15 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.6 (Fisher's exact test), Q value = 1

Table S503. Gene #63: 'MED15 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
MED15 MUTATED	9	6	9
MED15 WILD-TYPE	29	14	17

'MED15 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.802 (Fisher's exact test), Q value = 1

Table S504. Gene #63: 'MED15 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
MED15 MUTATED	9	5	10
MED15 WILD-TYPE	18	14	28

'MAML3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.678 (Fisher's exact test), Q value = 1

Table S505. Gene #64: 'MAML3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
MAML3 MUTATED	2	8	3
MAML3 WILD-TYPE	22	37	18

'MAML3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.698 (Fisher's exact test), Q value = 1

Table S506. Gene #64: 'MAML3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
MAML3 MUTATED	3	6	4
MAML3 WILD-TYPE	28	29	20

'MAML3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.494 (Fisher's exact test), Q value = 1

Table S507. Gene #64: 'MAML3 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
MAML3 MUTATED	7	2	4
MAML3 WILD-TYPE	33	23	15

'MAML3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0759 (Fisher's exact test), Q value = 1

Table S508. Gene #64: 'MAML3 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
MAML3 MUTATED	1	6	6
MAML3 WILD-TYPE	0	25	46

'MAML3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.533 (Fisher's exact test), Q value = 1

Table S509. Gene #64: 'MAML3 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
MAML3 MUTATED	3	3	3	4
MAML3 WILD-TYPE	28	17	8	18

'MAML3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.875 (Fisher's exact test), Q value = 1

Table S510. Gene #64: 'MAML3 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
MAML3 MUTATED	5	3	5
MAML3 WILD-TYPE	32	13	26

'MAML3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.54 (Fisher's exact test), Q value = 1

Table S511. Gene #64: 'MAML3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
MAML3 MUTATED	4	4	5
MAML3 WILD-TYPE	34	16	21

'MAML3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.862 (Fisher's exact test), Q value = 1

Table S512. Gene #64: 'MAML3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
MAML3 MUTATED	5	2	6
MAML3 WILD-TYPE	22	17	32

'SULT1C3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.747 (Fisher's exact test), Q value = 1

Table S513. Gene #65: 'SULT1C3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
SULT1C3 MUTATED	1	3	2
SULT1C3 WILD-TYPE	23	42	19

'SULT1C3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.435 (Fisher's exact test), Q value = 1

Table S514. Gene #65: 'SULT1C3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
SULT1C3 MUTATED	1	2	3
SULT1C3 WILD-TYPE	30	33	21

'SULT1C3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.755 (Fisher's exact test), Q value = 1

Table S515. Gene #65: 'SULT1C3 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
SULT1C3 MUTATED	3	1	2
SULT1C3 WILD-TYPE	37	24	17

'SULT1C3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S516. Gene #65: 'SULT1C3 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
SULT1C3 MUTATED	0	2	4
SULT1C3 WILD-TYPE	1	29	48

'SULT1C3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.189 (Fisher's exact test), Q value = 1

Table S517. Gene #65: 'SULT1C3 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
SULT1C3 MUTATED	3	1	2	0
SULT1C3 WILD-TYPE	28	19	9	22

'SULT1C3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S518. Gene #65: 'SULT1C3 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
SULT1C3 MUTATED	3	1	2
SULT1C3 WILD-TYPE	34	15	29

'SULT1C3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S519. Gene #65: 'SULT1C3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
SULT1C3 MUTATED	3	1	2
SULT1C3 WILD-TYPE	35	19	24

'SULT1C3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S520. Gene #65: 'SULT1C3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
SULT1C3 MUTATED	2	1	3
SULT1C3 WILD-TYPE	25	18	35

'CCR3 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S521. Gene #66: 'CCR3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
CCR3 MUTATED	2	5	2
CCR3 WILD-TYPE	22	40	19

'CCR3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.505 (Fisher's exact test), Q value = 1

Table S522. Gene #66: 'CCR3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
CCR3 MUTATED	3	5	1
CCR3 WILD-TYPE	28	30	23

'CCR3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.733 (Fisher's exact test), Q value = 1

Table S523. Gene #66: 'CCR3 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
CCR3 MUTATED	4	2	3
CCR3 WILD-TYPE	36	23	16

'CCR3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.751 (Fisher's exact test), Q value = 1

Table S524. Gene #66: 'CCR3 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
CCR3 MUTATED	0	4	5
CCR3 WILD-TYPE	1	27	47

'CCR3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.377 (Fisher's exact test), Q value = 1

Table S525. Gene #66: 'CCR3 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
CCR3 MUTATED	2	3	0	4
CCR3 WILD-TYPE	29	17	11	18

'CCR3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.813 (Fisher's exact test), Q value = 1

Table S526. Gene #66: 'CCR3 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
CCR3 MUTATED	5	1	3
CCR3 WILD-TYPE	32	15	28

'CCR3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S527. Gene #66: 'CCR3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
CCR3 MUTATED	4	2	3
CCR3 WILD-TYPE	34	18	23

'CCR3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S528. Gene #66: 'CCR3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
CCR3 MUTATED	3	2	4
CCR3 WILD-TYPE	24	17	34

'CLCC1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0726 (Fisher's exact test), Q value = 1

Table S529. Gene #67: 'CLCC1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
CLCC1 MUTATED	0	5	0
CLCC1 WILD-TYPE	24	40	21

'CLCC1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0122 (Fisher's exact test), Q value = 1

Table S530. Gene #67: 'CLCC1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
CLCC1 MUTATED	0	5	0
CLCC1 WILD-TYPE	31	30	24

Figure S39. Get High-res Image Gene #67: 'CLCC1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'CLCC1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.426 (Fisher's exact test), Q value = 1

Table S531. Gene #67: 'CLCC1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
CLCC1 MUTATED	1	2	2
CLCC1 WILD-TYPE	39	23	17

'CLCC1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.118 (Fisher's exact test), Q value = 1

Table S532. Gene #67: 'CLCC1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
CLCC1 MUTATED	0	4	1
CLCC1 WILD-TYPE	1	27	51

'CLCC1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0924 (Fisher's exact test), Q value = 1

Table S533. Gene #67: 'CLCC1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
CLCC1 MUTATED	0	3	1	1
CLCC1 WILD-TYPE	31	17	10	21

'CLCC1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.501 (Fisher's exact test), Q value = 1

Table S534. Gene #67: 'CLCC1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
CLCC1 MUTATED	1	1	3
CLCC1 WILD-TYPE	36	15	28

'CLCC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0504 (Fisher's exact test), Q value = 1

Table S535. Gene #67: 'CLCC1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
CLCC1 MUTATED	0	2	3
CLCC1 WILD-TYPE	38	18	23

'CLCC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0492 (Fisher's exact test), Q value = 1

Table S536. Gene #67: 'CLCC1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
CLCC1 MUTATED	3	2	0
CLCC1 WILD-TYPE	24	17	38

Figure S40. Get High-res Image Gene #67: 'CLCC1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

'PABPC1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.813 (Fisher's exact test), Q value = 1

Table S537. Gene #68: 'PABPC1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
PABPC1 MUTATED	5	7	3
PABPC1 WILD-TYPE	19	38	18

'PABPC1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.35 (Fisher's exact test), Q value = 1

Table S538. Gene #68: 'PABPC1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
PABPC1 MUTATED	7	6	2
PABPC1 WILD-TYPE	24	29	22

'PABPC1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.247 (Fisher's exact test), Q value = 1

Table S539. Gene #68: 'PABPC1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
PABPC1 MUTATED	8	6	1
PABPC1 WILD-TYPE	32	19	18

'PABPC1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S540. Gene #68: 'PABPC1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
PABPC1 MUTATED	0	6	9
PABPC1 WILD-TYPE	1	25	43

'PABPC1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.117 (Fisher's exact test), Q value = 1

Table S541. Gene #68: 'PABPC1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
PABPC1 MUTATED	7	6	1	1
PABPC1 WILD-TYPE	24	14	10	21

'PABPC1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.457 (Fisher's exact test), Q value = 1

Table S542. Gene #68: 'PABPC1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
PABPC1 MUTATED	8	1	6
PABPC1 WILD-TYPE	29	15	25

'PABPC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.266 (Fisher's exact test), Q value = 1

Table S543. Gene #68: 'PABPC1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
PABPC1 MUTATED	9	4	2
PABPC1 WILD-TYPE	29	16	24

'PABPC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.315 (Fisher's exact test), Q value = 1

Table S544. Gene #68: 'PABPC1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
PABPC1 MUTATED	6	1	8
PABPC1 WILD-TYPE	21	18	30

'CCDC103 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.259 (Fisher's exact test), Q value = 1

Table S545. Gene #69: 'CCDC103 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
CCDC103 MUTATED	3	3	0
CCDC103 WILD-TYPE	21	42	21

'CCDC103 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.877 (Fisher's exact test), Q value = 1

Table S546. Gene #69: 'CCDC103 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
CCDC103 MUTATED	2	3	1
CCDC103 WILD-TYPE	29	32	23

'CCDC103 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.345 (Fisher's exact test), Q value = 1

Table S547. Gene #69: 'CCDC103 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
CCDC103 MUTATED	2	1	3
CCDC103 WILD-TYPE	38	24	16

'CCDC103 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.69 (Fisher's exact test), Q value = 1

Table S548. Gene #69: 'CCDC103 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
CCDC103 MUTATED	0	3	3
CCDC103 WILD-TYPE	1	28	49

'CCDC103 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.651 (Fisher's exact test), Q value = 1

Table S549. Gene #69: 'CCDC103 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
CCDC103 MUTATED	2	1	0	3
CCDC103 WILD-TYPE	29	19	11	19

'CCDC103 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S550. Gene #69: 'CCDC103 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
CCDC103 MUTATED	3	1	2
CCDC103 WILD-TYPE	34	15	29

'CCDC103 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.561 (Fisher's exact test), Q value = 1

Table S551. Gene #69: 'CCDC103 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
CCDC103 MUTATED	2	1	3
CCDC103 WILD-TYPE	36	19	23

'CCDC103 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S552. Gene #69: 'CCDC103 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
CCDC103 MUTATED	2	1	3
CCDC103 WILD-TYPE	25	18	35

'CHGA MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0648 (Fisher's exact test), Q value = 1

Table S553. Gene #70: 'CHGA MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
CHGA MUTATED	1	5	6
CHGA WILD-TYPE	23	40	15

'CHGA MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S554. Gene #70: 'CHGA MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
CHGA MUTATED	4	5	3
CHGA WILD-TYPE	27	30	21

'CHGA MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.924 (Fisher's exact test), Q value = 1

Table S555. Gene #70: 'CHGA MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
CHGA MUTATED	6	4	2
CHGA WILD-TYPE	34	21	17

'CHGA MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.185 (Fisher's exact test), Q value = 1

Table S556. Gene #70: 'CHGA MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
CHGA MUTATED	1	4	7
CHGA WILD-TYPE	0	27	45

'CHGA MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0435 (Fisher's exact test), Q value = 1

Table S557. Gene #70: 'CHGA MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
CHGA MUTATED	1	6	1	4
CHGA WILD-TYPE	30	14	10	18

Figure S41. Get High-res Image Gene #70: 'CHGA MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

'CHGA MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.592 (Fisher's exact test), Q value = 1

Table S558. Gene #70: 'CHGA MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
CHGA MUTATED	4	2	6
CHGA WILD-TYPE	33	14	25

'CHGA MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.319 (Fisher's exact test), Q value = 1

Table S559. Gene #70: 'CHGA MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
CHGA MUTATED	4	5	3
CHGA WILD-TYPE	34	15	23

'CHGA MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.373 (Fisher's exact test), Q value = 1

Table S560. Gene #70: 'CHGA MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
CHGA MUTATED	6	2	4
CHGA WILD-TYPE	21	17	34

'KDM2A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.206 (Fisher's exact test), Q value = 1

Table S561. Gene #71: 'KDM2A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
KDM2A MUTATED	2	4	5
KDM2A WILD-TYPE	22	41	16

'KDM2A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0623 (Fisher's exact test), Q value = 1

Table S562. Gene #71: 'KDM2A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
KDM2A MUTATED	5	1	5
KDM2A WILD-TYPE	26	34	19

'KDM2A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.254 (Fisher's exact test), Q value = 1

Table S563. Gene #71: 'KDM2A MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
KDM2A MUTATED	8	2	1
KDM2A WILD-TYPE	32	23	18

'KDM2A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.137 (Fisher's exact test), Q value = 1

Table S564. Gene #71: 'KDM2A MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
KDM2A MUTATED	1	3	7
KDM2A WILD-TYPE	0	28	45

'KDM2A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.487 (Fisher's exact test), Q value = 1

Table S565. Gene #71: 'KDM2A MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
KDM2A MUTATED	6	3	1	1
KDM2A WILD-TYPE	25	17	10	21

'KDM2A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.708 (Fisher's exact test), Q value = 1

Table S566. Gene #71: 'KDM2A MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
KDM2A MUTATED	6	1	4
KDM2A WILD-TYPE	31	15	27

'KDM2A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.28 (Fisher's exact test), Q value = 1

Table S567. Gene #71: 'KDM2A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
KDM2A MUTATED	7	3	1
KDM2A WILD-TYPE	31	17	25

'KDM2A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.418 (Fisher's exact test), Q value = 1

Table S568. Gene #71: 'KDM2A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
KDM2A MUTATED	3	1	7
KDM2A WILD-TYPE	24	18	31

'OLIG3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.335 (Fisher's exact test), Q value = 1

Table S569. Gene #72: 'OLIG3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
OLIG3 MUTATED	5	6	1
OLIG3 WILD-TYPE	19	39	20

'OLIG3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.925 (Fisher's exact test), Q value = 1

Table S570. Gene #72: 'OLIG3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
OLIG3 MUTATED	5	4	3
OLIG3 WILD-TYPE	26	31	21

'OLIG3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.124 (Fisher's exact test), Q value = 1

Table S571. Gene #72: 'OLIG3 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
OLIG3 MUTATED	9	1	2
OLIG3 WILD-TYPE	31	24	17

'OLIG3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.013 (Fisher's exact test), Q value = 1

Table S572. Gene #72: 'OLIG3 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
OLIG3 MUTATED	1	1	10
OLIG3 WILD-TYPE	0	30	42

Figure S42. Get High-res Image Gene #72: 'OLIG3 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'OLIG3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.124 (Fisher's exact test), Q value = 1

Table S573. Gene #72: 'OLIG3 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
OLIG3 MUTATED	5	1	0	6
OLIG3 WILD-TYPE	26	19	11	16

'OLIG3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0857 (Fisher's exact test), Q value = 1

Table S574. Gene #72: 'OLIG3 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
OLIG3 MUTATED	9	1	2
OLIG3 WILD-TYPE	28	15	29

'OLIG3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.671 (Fisher's exact test), Q value = 1

Table S575. Gene #72: 'OLIG3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
OLIG3 MUTATED	7	2	3
OLIG3 WILD-TYPE	31	18	23

'OLIG3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.34 (Fisher's exact test), Q value = 1

Table S576. Gene #72: 'OLIG3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
OLIG3 MUTATED	2	2	8
OLIG3 WILD-TYPE	25	17	30

'FOXP2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.415 (Fisher's exact test), Q value = 1

Table S577. Gene #73: 'FOXP2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
FOXP2 MUTATED	3	11	6
FOXP2 WILD-TYPE	21	34	15

'FOXP2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.576 (Fisher's exact test), Q value = 1

Table S578. Gene #73: 'FOXP2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
FOXP2 MUTATED	5	9	6
FOXP2 WILD-TYPE	26	26	18

'FOXP2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.156 (Fisher's exact test), Q value = 1

Table S579. Gene #73: 'FOXP2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
FOXP2 MUTATED	9	3	7
FOXP2 WILD-TYPE	31	22	12

'FOXP2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.17 (Fisher's exact test), Q value = 1

Table S580. Gene #73: 'FOXP2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
FOXP2 MUTATED	1	8	10
FOXP2 WILD-TYPE	0	23	42

'FOXP2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.545 (Fisher's exact test), Q value = 1

Table S581. Gene #73: 'FOXP2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
FOXP2 MUTATED	5	4	3	7
FOXP2 WILD-TYPE	26	16	8	15

'FOXP2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.684 (Fisher's exact test), Q value = 1

Table S582. Gene #73: 'FOXP2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
FOXP2 MUTATED	8	5	6
FOXP2 WILD-TYPE	29	11	25

'FOXP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.475 (Fisher's exact test), Q value = 1

Table S583. Gene #73: 'FOXP2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
FOXP2 MUTATED	7	4	8
FOXP2 WILD-TYPE	31	16	18

'FOXP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.572 (Fisher's exact test), Q value = 1

Table S584. Gene #73: 'FOXP2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
FOXP2 MUTATED	5	6	8
FOXP2 WILD-TYPE	22	13	30

'MAGEA10 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.678 (Fisher's exact test), Q value = 1

Table S585. Gene #74: 'MAGEA10 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
MAGEA10 MUTATED	2	8	3
MAGEA10 WILD-TYPE	22	37	18

'MAGEA10 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.866 (Fisher's exact test), Q value = 1

Table S586. Gene #74: 'MAGEA10 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
MAGEA10 MUTATED	4	6	3
MAGEA10 WILD-TYPE	27	29	21

'MAGEA10 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.925 (Fisher's exact test), Q value = 1

Table S587. Gene #74: 'MAGEA10 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
MAGEA10 MUTATED	7	3	3
MAGEA10 WILD-TYPE	33	22	16

'MAGEA10 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.611 (Fisher's exact test), Q value = 1

Table S588. Gene #74: 'MAGEA10 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
MAGEA10 MUTATED	0	6	7
MAGEA10 WILD-TYPE	1	25	45

'MAGEA10 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.689 (Fisher's exact test), Q value = 1

Table S589. Gene #74: 'MAGEA10 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
MAGEA10 MUTATED	3	4	2	4
MAGEA10 WILD-TYPE	28	16	9	18

'MAGEA10 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.875 (Fisher's exact test), Q value = 1

Table S590. Gene #74: 'MAGEA10 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
MAGEA10 MUTATED	5	3	5
MAGEA10 WILD-TYPE	32	13	26

'MAGEA10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.805 (Fisher's exact test), Q value = 1

Table S591. Gene #74: 'MAGEA10 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
MAGEA10 MUTATED	5	4	4
MAGEA10 WILD-TYPE	33	16	22

'MAGEA10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.684 (Fisher's exact test), Q value = 1

Table S592. Gene #74: 'MAGEA10 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
MAGEA10 MUTATED	4	4	5
MAGEA10 WILD-TYPE	23	15	33

'EGR1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.821 (Fisher's exact test), Q value = 1

Table S593. Gene #75: 'EGR1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
EGR1 MUTATED	5	7	4
EGR1 WILD-TYPE	19	38	17

'EGR1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.905 (Fisher's exact test), Q value = 1

Table S594. Gene #75: 'EGR1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
EGR1 MUTATED	5	6	5
EGR1 WILD-TYPE	26	29	19

'EGR1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.867 (Fisher's exact test), Q value = 1

Table S595. Gene #75: 'EGR1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
EGR1 MUTATED	8	4	4
EGR1 WILD-TYPE	32	21	15

'EGR1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.26 (Fisher's exact test), Q value = 1

Table S596. Gene #75: 'EGR1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
EGR1 MUTATED	1	6	9
EGR1 WILD-TYPE	0	25	43

'EGR1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.57 (Fisher's exact test), Q value = 1

Table S597. Gene #75: 'EGR1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
EGR1 MUTATED	4	5	3	4
EGR1 WILD-TYPE	27	15	8	18

'EGR1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.557 (Fisher's exact test), Q value = 1

Table S598. Gene #75: 'EGR1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
EGR1 MUTATED	9	2	5
EGR1 WILD-TYPE	28	14	26

'EGR1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.657 (Fisher's exact test), Q value = 1

Table S599. Gene #75: 'EGR1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
EGR1 MUTATED	6	5	5
EGR1 WILD-TYPE	32	15	21

'EGR1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.938 (Fisher's exact test), Q value = 1

Table S600. Gene #75: 'EGR1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
EGR1 MUTATED	5	3	8
EGR1 WILD-TYPE	22	16	30

'PRDM8 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.565 (Fisher's exact test), Q value = 1

Table S601. Gene #76: 'PRDM8 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
PRDM8 MUTATED	8	10	5
PRDM8 WILD-TYPE	16	35	16

'PRDM8 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.274 (Fisher's exact test), Q value = 1

Table S602. Gene #76: 'PRDM8 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
PRDM8 MUTATED	11	8	4
PRDM8 WILD-TYPE	20	27	20

'PRDM8 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.821 (Fisher's exact test), Q value = 1

Table S603. Gene #76: 'PRDM8 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
PRDM8 MUTATED	10	8	5
PRDM8 WILD-TYPE	30	17	14

'PRDM8 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.164 (Fisher's exact test), Q value = 1

Table S604. Gene #76: 'PRDM8 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
PRDM8 MUTATED	1	10	12
PRDM8 WILD-TYPE	0	21	40

'PRDM8 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00997 (Fisher's exact test), Q value = 1

Table S605. Gene #76: 'PRDM8 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
PRDM8 MUTATED	8	11	2	2
PRDM8 WILD-TYPE	23	9	9	20

Figure S43. Get High-res Image Gene #76: 'PRDM8 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

'PRDM8 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.431 (Fisher's exact test), Q value = 1

Table S606. Gene #76: 'PRDM8 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
PRDM8 MUTATED	9	3	11
PRDM8 WILD-TYPE	28	13	20

'PRDM8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.285 (Fisher's exact test), Q value = 1

Table S607. Gene #76: 'PRDM8 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
PRDM8 MUTATED	10	8	5
PRDM8 WILD-TYPE	28	12	21

'PRDM8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.153 (Fisher's exact test), Q value = 1

Table S608. Gene #76: 'PRDM8 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
PRDM8 MUTATED	11	3	9
PRDM8 WILD-TYPE	16	16	29

'PIAS4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.605 (Fisher's exact test), Q value = 1

Table S609. Gene #77: 'PIAS4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
PIAS4 MUTATED	0	2	1
PIAS4 WILD-TYPE	24	43	20

'PIAS4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.266 (Fisher's exact test), Q value = 1

Table S610. Gene #77: 'PIAS4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
PIAS4 MUTATED	0	1	2
PIAS4 WILD-TYPE	31	34	22

'PIAS4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.795 (Fisher's exact test), Q value = 1

Table S611. Gene #77: 'PIAS4 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
PIAS4 MUTATED	1	1	1
PIAS4 WILD-TYPE	39	24	18

'PIAS4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0357 (Fisher's exact test), Q value = 1

Table S612. Gene #77: 'PIAS4 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
PIAS4 MUTATED	1	1	1
PIAS4 WILD-TYPE	0	30	51

Figure S44. Get High-res Image Gene #77: 'PIAS4 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'PIAS4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.164 (Fisher's exact test), Q value = 1

Table S613. Gene #77: 'PIAS4 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
PIAS4 MUTATED	0	2	0	1
PIAS4 WILD-TYPE	31	18	11	21

'PIAS4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.217 (Fisher's exact test), Q value = 1

Table S614. Gene #77: 'PIAS4 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
PIAS4 MUTATED	0	1	2
PIAS4 WILD-TYPE	37	15	29

'PIAS4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S615. Gene #77: 'PIAS4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
PIAS4 MUTATED	1	1	1
PIAS4 WILD-TYPE	37	19	25

'PIAS4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.228 (Fisher's exact test), Q value = 1

Table S616. Gene #77: 'PIAS4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
PIAS4 MUTATED	2	1	0
PIAS4 WILD-TYPE	25	18	38

'TEX2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.399 (Fisher's exact test), Q value = 1

Table S617. Gene #78: 'TEX2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
TEX2 MUTATED	3	8	1
TEX2 WILD-TYPE	21	37	20

'TEX2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.683 (Fisher's exact test), Q value = 1

Table S618. Gene #78: 'TEX2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
TEX2 MUTATED	3	6	3
TEX2 WILD-TYPE	28	29	21

'TEX2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.52 (Fisher's exact test), Q value = 1

Table S619. Gene #78: 'TEX2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
TEX2 MUTATED	4	4	4
TEX2 WILD-TYPE	36	21	15

'TEX2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.068 (Fisher's exact test), Q value = 1

Table S620. Gene #78: 'TEX2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
TEX2 MUTATED	1	6	5
TEX2 WILD-TYPE	0	25	47

'TEX2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.971 (Fisher's exact test), Q value = 1

Table S621. Gene #78: 'TEX2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
TEX2 MUTATED	4	3	2	3
TEX2 WILD-TYPE	27	17	9	19

'TEX2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.246 (Fisher's exact test), Q value = 1

Table S622. Gene #78: 'TEX2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
TEX2 MUTATED	3	4	5
TEX2 WILD-TYPE	34	12	26

'TEX2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.616 (Fisher's exact test), Q value = 1

Table S623. Gene #78: 'TEX2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
TEX2 MUTATED	4	3	5
TEX2 WILD-TYPE	34	17	21

'TEX2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.563 (Fisher's exact test), Q value = 1

Table S624. Gene #78: 'TEX2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
TEX2 MUTATED	4	4	4
TEX2 WILD-TYPE	23	15	34

'ARHGAP18 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.194 (Fisher's exact test), Q value = 1

Table S625. Gene #79: 'ARHGAP18 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
ARHGAP18 MUTATED	4	5	0
ARHGAP18 WILD-TYPE	20	40	21

'ARHGAP18 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.764 (Fisher's exact test), Q value = 1

Table S626. Gene #79: 'ARHGAP18 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
ARHGAP18 MUTATED	3	5	2
ARHGAP18 WILD-TYPE	28	30	22

'ARHGAP18 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0981 (Fisher's exact test), Q value = 1

Table S627. Gene #79: 'ARHGAP18 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
ARHGAP18 MUTATED	3	6	1
ARHGAP18 WILD-TYPE	37	19	18

'ARHGAP18 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.264 (Fisher's exact test), Q value = 1

Table S628. Gene #79: 'ARHGAP18 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
ARHGAP18 MUTATED	0	6	4
ARHGAP18 WILD-TYPE	1	25	48

'ARHGAP18 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.444 (Fisher's exact test), Q value = 1

Table S629. Gene #79: 'ARHGAP18 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
ARHGAP18 MUTATED	4	4	0	2
ARHGAP18 WILD-TYPE	27	16	11	20

'ARHGAP18 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.364 (Fisher's exact test), Q value = 1

Table S630. Gene #79: 'ARHGAP18 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
ARHGAP18 MUTATED	3	1	6
ARHGAP18 WILD-TYPE	34	15	25

'ARHGAP18 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.467 (Fisher's exact test), Q value = 1

Table S631. Gene #79: 'ARHGAP18 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
ARHGAP18 MUTATED	4	4	2
ARHGAP18 WILD-TYPE	34	16	24

'ARHGAP18 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.421 (Fisher's exact test), Q value = 1

Table S632. Gene #79: 'ARHGAP18 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
ARHGAP18 MUTATED	5	1	4
ARHGAP18 WILD-TYPE	22	18	34

'TMEM175 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.48 (Fisher's exact test), Q value = 1

Table S633. Gene #80: 'TMEM175 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
TMEM175 MUTATED	2	9	3
TMEM175 WILD-TYPE	22	36	18

'TMEM175 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.314 (Fisher's exact test), Q value = 1

Table S634. Gene #80: 'TMEM175 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
TMEM175 MUTATED	4	8	2
TMEM175 WILD-TYPE	27	27	22

'TMEM175 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.136 (Fisher's exact test), Q value = 1

Table S635. Gene #80: 'TMEM175 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
TMEM175 MUTATED	6	7	1
TMEM175 WILD-TYPE	34	18	18

'TMEM175 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.227 (Fisher's exact test), Q value = 1

Table S636. Gene #80: 'TMEM175 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
TMEM175 MUTATED	1	5	8
TMEM175 WILD-TYPE	0	26	44

'TMEM175 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.131 (Fisher's exact test), Q value = 1

Table S637. Gene #80: 'TMEM175 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
TMEM175 MUTATED	4	7	1	2
TMEM175 WILD-TYPE	27	13	10	20

'TMEM175 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0306 (Fisher's exact test), Q value = 1

Table S638. Gene #80: 'TMEM175 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
TMEM175 MUTATED	5	0	9
TMEM175 WILD-TYPE	32	16	22

Figure S45. Get High-res Image Gene #80: 'TMEM175 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'TMEM175 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.295 (Fisher's exact test), Q value = 1

Table S639. Gene #80: 'TMEM175 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
TMEM175 MUTATED	7	5	2
TMEM175 WILD-TYPE	31	15	24

'TMEM175 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.021 (Fisher's exact test), Q value = 1

Table S640. Gene #80: 'TMEM175 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
TMEM175 MUTATED	9	1	4
TMEM175 WILD-TYPE	18	18	34

Figure S46. Get High-res Image Gene #80: 'TMEM175 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

'CDKN2A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0117 (Fisher's exact test), Q value = 1

Table S641. Gene #81: 'CDKN2A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
CDKN2A MUTATED	7	5	9
CDKN2A WILD-TYPE	17	40	12

Figure S47. Get High-res Image Gene #81: 'CDKN2A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'CDKN2A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00458 (Fisher's exact test), Q value = 1

Table S642. Gene #81: 'CDKN2A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
CDKN2A MUTATED	7	3	11
CDKN2A WILD-TYPE	24	32	13

Figure S48. Get High-res Image Gene #81: 'CDKN2A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'CDKN2A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0693 (Fisher's exact test), Q value = 1

Table S643. Gene #81: 'CDKN2A MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
CDKN2A MUTATED	11	8	1
CDKN2A WILD-TYPE	29	17	18

'CDKN2A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.124 (Fisher's exact test), Q value = 1

Table S644. Gene #81: 'CDKN2A MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
CDKN2A MUTATED	0	4	16
CDKN2A WILD-TYPE	1	27	36

'CDKN2A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0884 (Fisher's exact test), Q value = 1

Table S645. Gene #81: 'CDKN2A MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
CDKN2A MUTATED	10	7	1	2
CDKN2A WILD-TYPE	21	13	10	20

'CDKN2A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.173 (Fisher's exact test), Q value = 1

Table S646. Gene #81: 'CDKN2A MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
CDKN2A MUTATED	11	1	8
CDKN2A WILD-TYPE	26	15	23

'CDKN2A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00829 (Fisher's exact test), Q value = 1

Table S647. Gene #81: 'CDKN2A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
CDKN2A MUTATED	13	6	1
CDKN2A WILD-TYPE	25	14	25

Figure S49. Get High-res Image Gene #81: 'CDKN2A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

'CDKN2A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0845 (Fisher's exact test), Q value = 1

Table S648. Gene #81: 'CDKN2A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
CDKN2A MUTATED	8	1	11
CDKN2A WILD-TYPE	19	18	27

'CBR3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.135 (Fisher's exact test), Q value = 1

Table S649. Gene #82: 'CBR3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
CBR3 MUTATED	1	1	3
CBR3 WILD-TYPE	23	44	18

'CBR3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0197 (Fisher's exact test), Q value = 1

Table S650. Gene #82: 'CBR3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
CBR3 MUTATED	1	0	4
CBR3 WILD-TYPE	30	35	20

Figure S50. Get High-res Image Gene #82: 'CBR3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'CBR3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.245 (Fisher's exact test), Q value = 1

Table S651. Gene #82: 'CBR3 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
CBR3 MUTATED	4	0	1
CBR3 WILD-TYPE	36	25	18

'CBR3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.202 (Fisher's exact test), Q value = 1

Table S652. Gene #82: 'CBR3 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
CBR3 MUTATED	0	0	5
CBR3 WILD-TYPE	1	31	47

'CBR3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.551 (Fisher's exact test), Q value = 1

Table S653. Gene #82: 'CBR3 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
CBR3 MUTATED	3	0	1	1
CBR3 WILD-TYPE	28	20	10	21

'CBR3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.267 (Fisher's exact test), Q value = 1

Table S654. Gene #82: 'CBR3 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
CBR3 MUTATED	4	0	1
CBR3 WILD-TYPE	33	16	30

'CBR3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.597 (Fisher's exact test), Q value = 1

Table S655. Gene #82: 'CBR3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
CBR3 MUTATED	3	0	2
CBR3 WILD-TYPE	35	20	24

'CBR3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.187 (Fisher's exact test), Q value = 1

Table S656. Gene #82: 'CBR3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
CBR3 MUTATED	0	1	4
CBR3 WILD-TYPE	27	18	34

'TOX4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0815 (Fisher's exact test), Q value = 1

Table S657. Gene #83: 'TOX4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
TOX4 MUTATED	0	5	4
TOX4 WILD-TYPE	24	40	17

'TOX4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.101 (Fisher's exact test), Q value = 1

Table S658. Gene #83: 'TOX4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
TOX4 MUTATED	1	3	5
TOX4 WILD-TYPE	30	32	19

'TOX4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.733 (Fisher's exact test), Q value = 1

Table S659. Gene #83: 'TOX4 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
TOX4 MUTATED	4	2	3
TOX4 WILD-TYPE	36	23	16

'TOX4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0703 (Fisher's exact test), Q value = 1

Table S660. Gene #83: 'TOX4 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
TOX4 MUTATED	1	4	4
TOX4 WILD-TYPE	0	27	48

'TOX4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.268 (Fisher's exact test), Q value = 1

Table S661. Gene #83: 'TOX4 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
TOX4 MUTATED	1	3	1	4
TOX4 WILD-TYPE	30	17	10	18

'TOX4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.525 (Fisher's exact test), Q value = 1

Table S662. Gene #83: 'TOX4 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
TOX4 MUTATED	3	3	3
TOX4 WILD-TYPE	34	13	28

'TOX4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.604 (Fisher's exact test), Q value = 1

Table S663. Gene #83: 'TOX4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
TOX4 MUTATED	3	2	4
TOX4 WILD-TYPE	35	18	22

'TOX4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.538 (Fisher's exact test), Q value = 1

Table S664. Gene #83: 'TOX4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
TOX4 MUTATED	3	3	3
TOX4 WILD-TYPE	24	16	35

'OR10A2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.87 (Fisher's exact test), Q value = 1

Table S665. Gene #84: 'OR10A2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
OR10A2 MUTATED	3	8	4
OR10A2 WILD-TYPE	21	37	17

'OR10A2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.124 (Fisher's exact test), Q value = 1

Table S666. Gene #84: 'OR10A2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
OR10A2 MUTATED	6	8	1
OR10A2 WILD-TYPE	25	27	23

'OR10A2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.872 (Fisher's exact test), Q value = 1

Table S667. Gene #84: 'OR10A2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
OR10A2 MUTATED	7	4	4
OR10A2 WILD-TYPE	33	21	15

'OR10A2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.308 (Fisher's exact test), Q value = 1

Table S668. Gene #84: 'OR10A2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
OR10A2 MUTATED	0	8	7
OR10A2 WILD-TYPE	1	23	45

'OR10A2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.673 (Fisher's exact test), Q value = 1

Table S669. Gene #84: 'OR10A2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
OR10A2 MUTATED	4	4	3	4
OR10A2 WILD-TYPE	27	16	8	18

'OR10A2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S670. Gene #84: 'OR10A2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
OR10A2 MUTATED	7	3	5
OR10A2 WILD-TYPE	30	13	26

'OR10A2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.936 (Fisher's exact test), Q value = 1

Table S671. Gene #84: 'OR10A2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
OR10A2 MUTATED	7	4	4
OR10A2 WILD-TYPE	31	16	22

'OR10A2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S672. Gene #84: 'OR10A2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
OR10A2 MUTATED	5	3	7
OR10A2 WILD-TYPE	22	16	31

'OR10A7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.379 (Fisher's exact test), Q value = 1

Table S673. Gene #85: 'OR10A7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
OR10A7 MUTATED	10	12	8
OR10A7 WILD-TYPE	14	33	13

'OR10A7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.166 (Fisher's exact test), Q value = 1

Table S674. Gene #85: 'OR10A7 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
OR10A7 MUTATED	14	8	8
OR10A7 WILD-TYPE	17	27	16

'OR10A7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.596 (Fisher's exact test), Q value = 1

Table S675. Gene #85: 'OR10A7 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
OR10A7 MUTATED	14	7	8
OR10A7 WILD-TYPE	26	18	11

'OR10A7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.796 (Fisher's exact test), Q value = 1

Table S676. Gene #85: 'OR10A7 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
OR10A7 MUTATED	0	10	19
OR10A7 WILD-TYPE	1	21	33

'OR10A7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.334 (Fisher's exact test), Q value = 1

Table S677. Gene #85: 'OR10A7 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
OR10A7 MUTATED	12	5	6	6
OR10A7 WILD-TYPE	19	15	5	16

'OR10A7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.571 (Fisher's exact test), Q value = 1

Table S678. Gene #85: 'OR10A7 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
OR10A7 MUTATED	15	5	9
OR10A7 WILD-TYPE	22	11	22

'OR10A7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.918 (Fisher's exact test), Q value = 1

Table S679. Gene #85: 'OR10A7 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
OR10A7 MUTATED	14	7	8
OR10A7 WILD-TYPE	24	13	18

'OR10A7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.451 (Fisher's exact test), Q value = 1

Table S680. Gene #85: 'OR10A7 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
OR10A7 MUTATED	8	5	16
OR10A7 WILD-TYPE	19	14	22

'FAM63B MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S681. Gene #86: 'FAM63B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
FAM63B MUTATED	2	5	2
FAM63B WILD-TYPE	22	40	19

'FAM63B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.586 (Fisher's exact test), Q value = 1

Table S682. Gene #86: 'FAM63B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
FAM63B MUTATED	2	5	3
FAM63B WILD-TYPE	29	30	21

'FAM63B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S683. Gene #86: 'FAM63B MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
FAM63B MUTATED	5	3	2
FAM63B WILD-TYPE	35	22	17

'FAM63B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.15 (Fisher's exact test), Q value = 1

Table S684. Gene #86: 'FAM63B MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
FAM63B MUTATED	1	3	6
FAM63B WILD-TYPE	0	28	46

'FAM63B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.633 (Fisher's exact test), Q value = 1

Table S685. Gene #86: 'FAM63B MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
FAM63B MUTATED	2	3	2	3
FAM63B WILD-TYPE	29	17	9	19

'FAM63B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.745 (Fisher's exact test), Q value = 1

Table S686. Gene #86: 'FAM63B MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
FAM63B MUTATED	4	1	5
FAM63B WILD-TYPE	33	15	26

'FAM63B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.91 (Fisher's exact test), Q value = 1

Table S687. Gene #86: 'FAM63B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
FAM63B MUTATED	4	3	3
FAM63B WILD-TYPE	34	17	23

'FAM63B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.421 (Fisher's exact test), Q value = 1

Table S688. Gene #86: 'FAM63B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
FAM63B MUTATED	5	1	4
FAM63B WILD-TYPE	22	18	34

'RNF168 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.797 (Fisher's exact test), Q value = 1

Table S689. Gene #87: 'RNF168 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
RNF168 MUTATED	3	4	1
RNF168 WILD-TYPE	21	41	20

'RNF168 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.586 (Fisher's exact test), Q value = 1

Table S690. Gene #87: 'RNF168 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
RNF168 MUTATED	4	2	2
RNF168 WILD-TYPE	27	33	22

'RNF168 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.892 (Fisher's exact test), Q value = 1

Table S691. Gene #87: 'RNF168 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
RNF168 MUTATED	4	3	1
RNF168 WILD-TYPE	36	22	18

'RNF168 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0429 (Fisher's exact test), Q value = 1

Table S692. Gene #87: 'RNF168 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
RNF168 MUTATED	1	4	3
RNF168 WILD-TYPE	0	27	49

Figure S51. Get High-res Image Gene #87: 'RNF168 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'RNF168 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.154 (Fisher's exact test), Q value = 1

Table S693. Gene #87: 'RNF168 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
RNF168 MUTATED	3	4	1	0
RNF168 WILD-TYPE	28	16	10	22

'RNF168 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.795 (Fisher's exact test), Q value = 1

Table S694. Gene #87: 'RNF168 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
RNF168 MUTATED	3	1	4
RNF168 WILD-TYPE	34	15	27

'RNF168 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.451 (Fisher's exact test), Q value = 1

Table S695. Gene #87: 'RNF168 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
RNF168 MUTATED	4	3	1
RNF168 WILD-TYPE	34	17	25

'RNF168 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.565 (Fisher's exact test), Q value = 1

Table S696. Gene #87: 'RNF168 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
RNF168 MUTATED	4	1	3
RNF168 WILD-TYPE	23	18	35

'POP5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.85 (Fisher's exact test), Q value = 1

Table S697. Gene #88: 'POP5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
POP5 MUTATED	4	6	2
POP5 WILD-TYPE	20	39	19

'POP5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.738 (Fisher's exact test), Q value = 1

Table S698. Gene #88: 'POP5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
POP5 MUTATED	5	5	2
POP5 WILD-TYPE	26	30	22

'POP5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.851 (Fisher's exact test), Q value = 1

Table S699. Gene #88: 'POP5 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
POP5 MUTATED	5	4	3
POP5 WILD-TYPE	35	21	16

'POP5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.443 (Fisher's exact test), Q value = 1

Table S700. Gene #88: 'POP5 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
POP5 MUTATED	0	6	6
POP5 WILD-TYPE	1	25	46

'POP5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.766 (Fisher's exact test), Q value = 1

Table S701. Gene #88: 'POP5 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
POP5 MUTATED	5	4	1	2
POP5 WILD-TYPE	26	16	10	20

'POP5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.269 (Fisher's exact test), Q value = 1

Table S702. Gene #88: 'POP5 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
POP5 MUTATED	3	2	7
POP5 WILD-TYPE	34	14	24

'POP5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.319 (Fisher's exact test), Q value = 1

Table S703. Gene #88: 'POP5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
POP5 MUTATED	4	5	3
POP5 WILD-TYPE	34	15	23

'POP5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.782 (Fisher's exact test), Q value = 1

Table S704. Gene #88: 'POP5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
POP5 MUTATED	5	2	5
POP5 WILD-TYPE	22	17	33

'NF2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.103 (Fisher's exact test), Q value = 1

Table S705. Gene #89: 'NF2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
NF2 MUTATED	0	2	3
NF2 WILD-TYPE	24	43	18

'NF2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.304 (Fisher's exact test), Q value = 1

Table S706. Gene #89: 'NF2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
NF2 MUTATED	1	1	3
NF2 WILD-TYPE	30	34	21

'NF2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.596 (Fisher's exact test), Q value = 1

Table S707. Gene #89: 'NF2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
NF2 MUTATED	3	2	0
NF2 WILD-TYPE	37	23	19

'NF2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.065 (Fisher's exact test), Q value = 1

Table S708. Gene #89: 'NF2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
NF2 MUTATED	1	1	3
NF2 WILD-TYPE	0	30	49

'NF2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.102 (Fisher's exact test), Q value = 1

Table S709. Gene #89: 'NF2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
NF2 MUTATED	0	2	0	3
NF2 WILD-TYPE	31	18	11	19

'NF2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.598 (Fisher's exact test), Q value = 1

Table S710. Gene #89: 'NF2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
NF2 MUTATED	2	0	3
NF2 WILD-TYPE	35	16	28

'NF2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.147 (Fisher's exact test), Q value = 1

Table S711. Gene #89: 'NF2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
NF2 MUTATED	1	3	1
NF2 WILD-TYPE	37	17	25

'NF2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.365 (Fisher's exact test), Q value = 1

Table S712. Gene #89: 'NF2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
NF2 MUTATED	3	0	2
NF2 WILD-TYPE	24	19	36

'RIOK1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.556 (Fisher's exact test), Q value = 1

Table S713. Gene #90: 'RIOK1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
RIOK1 MUTATED	2	8	4
RIOK1 WILD-TYPE	22	37	17

'RIOK1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.154 (Fisher's exact test), Q value = 1

Table S714. Gene #90: 'RIOK1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
RIOK1 MUTATED	2	6	6
RIOK1 WILD-TYPE	29	29	18

'RIOK1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0336 (Fisher's exact test), Q value = 1

Table S715. Gene #90: 'RIOK1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
RIOK1 MUTATED	5	2	7
RIOK1 WILD-TYPE	35	23	12

Figure S52. Get High-res Image Gene #90: 'RIOK1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

'RIOK1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0581 (Fisher's exact test), Q value = 1

Table S716. Gene #90: 'RIOK1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
RIOK1 MUTATED	1	7	6
RIOK1 WILD-TYPE	0	24	46

'RIOK1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.242 (Fisher's exact test), Q value = 1

Table S717. Gene #90: 'RIOK1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
RIOK1 MUTATED	3	3	4	4
RIOK1 WILD-TYPE	28	17	7	18

'RIOK1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.25 (Fisher's exact test), Q value = 1

Table S718. Gene #90: 'RIOK1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
RIOK1 MUTATED	5	5	4
RIOK1 WILD-TYPE	32	11	27

'RIOK1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.11 (Fisher's exact test), Q value = 1

Table S719. Gene #90: 'RIOK1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
RIOK1 MUTATED	3	4	7
RIOK1 WILD-TYPE	35	16	19

'RIOK1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.476 (Fisher's exact test), Q value = 1

Table S720. Gene #90: 'RIOK1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
RIOK1 MUTATED	4	5	5
RIOK1 WILD-TYPE	23	14	33

'OR6C65 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.747 (Fisher's exact test), Q value = 1

Table S721. Gene #91: 'OR6C65 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
OR6C65 MUTATED	1	3	2
OR6C65 WILD-TYPE	23	42	19

'OR6C65 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.877 (Fisher's exact test), Q value = 1

Table S722. Gene #91: 'OR6C65 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
OR6C65 MUTATED	2	3	1
OR6C65 WILD-TYPE	29	32	23

'OR6C65 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.651 (Fisher's exact test), Q value = 1

Table S723. Gene #91: 'OR6C65 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
OR6C65 MUTATED	2	2	2
OR6C65 WILD-TYPE	38	23	17

'OR6C65 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.248 (Fisher's exact test), Q value = 1

Table S724. Gene #91: 'OR6C65 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
OR6C65 MUTATED	0	4	2
OR6C65 WILD-TYPE	1	27	50

'OR6C65 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0332 (Fisher's exact test), Q value = 1

Table S725. Gene #91: 'OR6C65 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
OR6C65 MUTATED	0	3	2	1
OR6C65 WILD-TYPE	31	17	9	21

Figure S53. Get High-res Image Gene #91: 'OR6C65 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

'OR6C65 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.284 (Fisher's exact test), Q value = 1

Table S726. Gene #91: 'OR6C65 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
OR6C65 MUTATED	1	2	3
OR6C65 WILD-TYPE	36	14	28

'OR6C65 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.865 (Fisher's exact test), Q value = 1

Table S727. Gene #91: 'OR6C65 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
OR6C65 MUTATED	2	2	2
OR6C65 WILD-TYPE	36	18	24

'OR6C65 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.348 (Fisher's exact test), Q value = 1

Table S728. Gene #91: 'OR6C65 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
OR6C65 MUTATED	3	2	1
OR6C65 WILD-TYPE	24	17	37

'ZBTB24 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.448 (Fisher's exact test), Q value = 1

Table S729. Gene #92: 'ZBTB24 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
ZBTB24 MUTATED	2	1	1
ZBTB24 WILD-TYPE	22	44	20

'ZBTB24 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.365 (Fisher's exact test), Q value = 1

Table S730. Gene #92: 'ZBTB24 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
ZBTB24 MUTATED	3	2	0
ZBTB24 WILD-TYPE	28	33	24

'ZBTB24 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0402 (Fisher's exact test), Q value = 1

Table S731. Gene #92: 'ZBTB24 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
ZBTB24 MUTATED	0	3	2
ZBTB24 WILD-TYPE	40	22	17

Figure S54. Get High-res Image Gene #92: 'ZBTB24 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

'ZBTB24 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.395 (Fisher's exact test), Q value = 1

Table S732. Gene #92: 'ZBTB24 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
ZBTB24 MUTATED	0	3	2
ZBTB24 WILD-TYPE	1	28	50

'ZBTB24 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.633 (Fisher's exact test), Q value = 1

Table S733. Gene #92: 'ZBTB24 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
ZBTB24 MUTATED	1	2	0	2
ZBTB24 WILD-TYPE	30	18	11	20

'ZBTB24 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.501 (Fisher's exact test), Q value = 1

Table S734. Gene #92: 'ZBTB24 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
ZBTB24 MUTATED	1	1	3
ZBTB24 WILD-TYPE	36	15	28

'ZBTB24 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.509 (Fisher's exact test), Q value = 1

Table S735. Gene #92: 'ZBTB24 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
ZBTB24 MUTATED	1	2	2
ZBTB24 WILD-TYPE	37	18	24

'ZBTB24 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S736. Gene #92: 'ZBTB24 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
ZBTB24 MUTATED	2	1	2
ZBTB24 WILD-TYPE	25	18	36

'SYT15 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.221 (Fisher's exact test), Q value = 1

Table S737. Gene #93: 'SYT15 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
SYT15 MUTATED	1	8	4
SYT15 WILD-TYPE	23	37	17

'SYT15 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.585 (Fisher's exact test), Q value = 1

Table S738. Gene #93: 'SYT15 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
SYT15 MUTATED	4	4	5
SYT15 WILD-TYPE	27	31	19

'SYT15 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.925 (Fisher's exact test), Q value = 1

Table S739. Gene #93: 'SYT15 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
SYT15 MUTATED	7	3	3
SYT15 WILD-TYPE	33	22	16

'SYT15 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.171 (Fisher's exact test), Q value = 1

Table S740. Gene #93: 'SYT15 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
SYT15 MUTATED	1	5	7
SYT15 WILD-TYPE	0	26	45

'SYT15 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.703 (Fisher's exact test), Q value = 1

Table S741. Gene #93: 'SYT15 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
SYT15 MUTATED	6	4	1	2
SYT15 WILD-TYPE	25	16	10	20

'SYT15 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S742. Gene #93: 'SYT15 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
SYT15 MUTATED	6	2	5
SYT15 WILD-TYPE	31	14	26

'SYT15 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.69 (Fisher's exact test), Q value = 1

Table S743. Gene #93: 'SYT15 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
SYT15 MUTATED	6	4	3
SYT15 WILD-TYPE	32	16	23

'SYT15 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.862 (Fisher's exact test), Q value = 1

Table S744. Gene #93: 'SYT15 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
SYT15 MUTATED	5	2	6
SYT15 WILD-TYPE	22	17	32

'SLC22A9 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.471 (Fisher's exact test), Q value = 1

Table S745. Gene #94: 'SLC22A9 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
SLC22A9 MUTATED	4	7	1
SLC22A9 WILD-TYPE	20	38	20

'SLC22A9 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.331 (Fisher's exact test), Q value = 1

Table S746. Gene #94: 'SLC22A9 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
SLC22A9 MUTATED	5	6	1
SLC22A9 WILD-TYPE	26	29	23

'SLC22A9 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.401 (Fisher's exact test), Q value = 1

Table S747. Gene #94: 'SLC22A9 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
SLC22A9 MUTATED	8	2	2
SLC22A9 WILD-TYPE	32	23	17

'SLC22A9 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S748. Gene #94: 'SLC22A9 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
SLC22A9 MUTATED	0	4	8
SLC22A9 WILD-TYPE	1	27	44

'SLC22A9 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.894 (Fisher's exact test), Q value = 1

Table S749. Gene #94: 'SLC22A9 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
SLC22A9 MUTATED	5	2	1	4
SLC22A9 WILD-TYPE	26	18	10	18

'SLC22A9 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.46 (Fisher's exact test), Q value = 1

Table S750. Gene #94: 'SLC22A9 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
SLC22A9 MUTATED	7	1	4
SLC22A9 WILD-TYPE	30	15	27

'SLC22A9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.671 (Fisher's exact test), Q value = 1

Table S751. Gene #94: 'SLC22A9 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
SLC22A9 MUTATED	7	2	3
SLC22A9 WILD-TYPE	31	18	23

'SLC22A9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.721 (Fisher's exact test), Q value = 1

Table S752. Gene #94: 'SLC22A9 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
SLC22A9 MUTATED	3	2	7
SLC22A9 WILD-TYPE	24	17	31

'SRP14 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.941 (Fisher's exact test), Q value = 1

Table S753. Gene #95: 'SRP14 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
SRP14 MUTATED	4	10	4
SRP14 WILD-TYPE	20	35	17

'SRP14 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S754. Gene #95: 'SRP14 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
SRP14 MUTATED	6	7	5
SRP14 WILD-TYPE	25	28	19

'SRP14 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.232 (Fisher's exact test), Q value = 1

Table S755. Gene #95: 'SRP14 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
SRP14 MUTATED	8	8	2
SRP14 WILD-TYPE	32	17	17

'SRP14 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.497 (Fisher's exact test), Q value = 1

Table S756. Gene #95: 'SRP14 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
SRP14 MUTATED	0	5	13
SRP14 WILD-TYPE	1	26	39

'SRP14 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.44 (Fisher's exact test), Q value = 1

Table S757. Gene #95: 'SRP14 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
SRP14 MUTATED	4	6	3	5
SRP14 WILD-TYPE	27	14	8	17

'SRP14 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.397 (Fisher's exact test), Q value = 1

Table S758. Gene #95: 'SRP14 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
SRP14 MUTATED	7	2	9
SRP14 WILD-TYPE	30	14	22

'SRP14 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.258 (Fisher's exact test), Q value = 1

Table S759. Gene #95: 'SRP14 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
SRP14 MUTATED	7	7	4
SRP14 WILD-TYPE	31	13	22

'SRP14 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.163 (Fisher's exact test), Q value = 1

Table S760. Gene #95: 'SRP14 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
SRP14 MUTATED	9	2	7
SRP14 WILD-TYPE	18	17	31

'DIAPH3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.643 (Fisher's exact test), Q value = 1

Table S761. Gene #96: 'DIAPH3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
DIAPH3 MUTATED	5	7	2
DIAPH3 WILD-TYPE	19	38	19

'DIAPH3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.474 (Fisher's exact test), Q value = 1

Table S762. Gene #96: 'DIAPH3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
DIAPH3 MUTATED	3	6	5
DIAPH3 WILD-TYPE	28	29	19

'DIAPH3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.283 (Fisher's exact test), Q value = 1

Table S763. Gene #96: 'DIAPH3 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
DIAPH3 MUTATED	7	2	5
DIAPH3 WILD-TYPE	33	23	14

'DIAPH3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0581 (Fisher's exact test), Q value = 1

Table S764. Gene #96: 'DIAPH3 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
DIAPH3 MUTATED	1	7	6
DIAPH3 WILD-TYPE	0	24	46

'DIAPH3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0286 (Fisher's exact test), Q value = 1

Table S765. Gene #96: 'DIAPH3 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
DIAPH3 MUTATED	6	2	5	1
DIAPH3 WILD-TYPE	25	18	6	21

Figure S55. Get High-res Image Gene #96: 'DIAPH3 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

'DIAPH3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.579 (Fisher's exact test), Q value = 1

Table S766. Gene #96: 'DIAPH3 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
DIAPH3 MUTATED	6	4	4
DIAPH3 WILD-TYPE	31	12	27

'DIAPH3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.932 (Fisher's exact test), Q value = 1

Table S767. Gene #96: 'DIAPH3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
DIAPH3 MUTATED	6	3	5
DIAPH3 WILD-TYPE	32	17	21

'DIAPH3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.932 (Fisher's exact test), Q value = 1

Table S768. Gene #96: 'DIAPH3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
DIAPH3 MUTATED	4	3	7
DIAPH3 WILD-TYPE	23	16	31

'WRN MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0656 (Fisher's exact test), Q value = 1

Table S769. Gene #97: 'WRN MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
WRN MUTATED	5	8	0
WRN WILD-TYPE	19	37	21

'WRN MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.124 (Fisher's exact test), Q value = 1

Table S770. Gene #97: 'WRN MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
WRN MUTATED	4	8	1
WRN WILD-TYPE	27	27	23

'WRN MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.427 (Fisher's exact test), Q value = 1

Table S771. Gene #97: 'WRN MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
WRN MUTATED	4	5	4
WRN WILD-TYPE	36	20	15

'WRN MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.34 (Fisher's exact test), Q value = 1

Table S772. Gene #97: 'WRN MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
WRN MUTATED	0	7	6
WRN WILD-TYPE	1	24	46

'WRN MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.949 (Fisher's exact test), Q value = 1

Table S773. Gene #97: 'WRN MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
WRN MUTATED	4	3	2	4
WRN WILD-TYPE	27	17	9	18

'WRN MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.875 (Fisher's exact test), Q value = 1

Table S774. Gene #97: 'WRN MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
WRN MUTATED	5	3	5
WRN WILD-TYPE	32	13	26

'WRN MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.805 (Fisher's exact test), Q value = 1

Table S775. Gene #97: 'WRN MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
WRN MUTATED	5	4	4
WRN WILD-TYPE	33	16	22

'WRN MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.925 (Fisher's exact test), Q value = 1

Table S776. Gene #97: 'WRN MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
WRN MUTATED	5	3	5
WRN WILD-TYPE	22	16	33

'PDZD2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.163 (Fisher's exact test), Q value = 1

Table S777. Gene #98: 'PDZD2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
PDZD2 MUTATED	5	11	1
PDZD2 WILD-TYPE	19	34	20

'PDZD2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S778. Gene #98: 'PDZD2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
PDZD2 MUTATED	6	7	5
PDZD2 WILD-TYPE	25	28	19

'PDZD2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.151 (Fisher's exact test), Q value = 1

Table S779. Gene #98: 'PDZD2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
PDZD2 MUTATED	5	7	6
PDZD2 WILD-TYPE	35	18	13

'PDZD2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0171 (Fisher's exact test), Q value = 1

Table S780. Gene #98: 'PDZD2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
PDZD2 MUTATED	1	10	7
PDZD2 WILD-TYPE	0	21	45

Figure S56. Get High-res Image Gene #98: 'PDZD2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'PDZD2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.276 (Fisher's exact test), Q value = 1

Table S781. Gene #98: 'PDZD2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
PDZD2 MUTATED	4	7	3	4
PDZD2 WILD-TYPE	27	13	8	18

'PDZD2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0871 (Fisher's exact test), Q value = 1

Table S782. Gene #98: 'PDZD2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
PDZD2 MUTATED	4	4	10
PDZD2 WILD-TYPE	33	12	21

'PDZD2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0354 (Fisher's exact test), Q value = 1

Table S783. Gene #98: 'PDZD2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
PDZD2 MUTATED	4	8	6
PDZD2 WILD-TYPE	34	12	20

Figure S57. Get High-res Image Gene #98: 'PDZD2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

'PDZD2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.155 (Fisher's exact test), Q value = 1

Table S784. Gene #98: 'PDZD2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
PDZD2 MUTATED	9	4	5
PDZD2 WILD-TYPE	18	15	33

'AARS2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.116 (Fisher's exact test), Q value = 1

Table S785. Gene #99: 'AARS2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
AARS2 MUTATED	3	8	0
AARS2 WILD-TYPE	21	37	21

'AARS2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.555 (Fisher's exact test), Q value = 1

Table S786. Gene #99: 'AARS2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
AARS2 MUTATED	3	6	2
AARS2 WILD-TYPE	28	29	22

'AARS2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.305 (Fisher's exact test), Q value = 1

Table S787. Gene #99: 'AARS2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
AARS2 MUTATED	3	4	4
AARS2 WILD-TYPE	37	21	15

'AARS2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0357 (Fisher's exact test), Q value = 1

Table S788. Gene #99: 'AARS2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
AARS2 MUTATED	1	6	4
AARS2 WILD-TYPE	0	25	48

Figure S58. Get High-res Image Gene #99: 'AARS2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'AARS2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.498 (Fisher's exact test), Q value = 1

Table S789. Gene #99: 'AARS2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
AARS2 MUTATED	2	3	2	4
AARS2 WILD-TYPE	29	17	9	18

'AARS2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.401 (Fisher's exact test), Q value = 1

Table S790. Gene #99: 'AARS2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
AARS2 MUTATED	3	2	6
AARS2 WILD-TYPE	34	14	25

'AARS2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.347 (Fisher's exact test), Q value = 1

Table S791. Gene #99: 'AARS2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
AARS2 MUTATED	3	3	5
AARS2 WILD-TYPE	35	17	21

'AARS2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.277 (Fisher's exact test), Q value = 1

Table S792. Gene #99: 'AARS2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
AARS2 MUTATED	6	2	3
AARS2 WILD-TYPE	21	17	35

'SHPRH MUTATION STATUS' versus 'CN_CNMF'

P value = 0.85 (Fisher's exact test), Q value = 1

Table S793. Gene #100: 'SHPRH MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
SHPRH MUTATED	4	6	2
SHPRH WILD-TYPE	20	39	19

'SHPRH MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.795 (Fisher's exact test), Q value = 1

Table S794. Gene #100: 'SHPRH MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
SHPRH MUTATED	3	5	4
SHPRH WILD-TYPE	28	30	20

'SHPRH MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.236 (Fisher's exact test), Q value = 1

Table S795. Gene #100: 'SHPRH MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
SHPRH MUTATED	5	6	1
SHPRH WILD-TYPE	35	19	18

'SHPRH MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.068 (Fisher's exact test), Q value = 1

Table S796. Gene #100: 'SHPRH MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
SHPRH MUTATED	1	6	5
SHPRH WILD-TYPE	0	25	47

'SHPRH MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.2 (Fisher's exact test), Q value = 1

Table S797. Gene #100: 'SHPRH MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
SHPRH MUTATED	3	6	1	2
SHPRH WILD-TYPE	28	14	10	20

'SHPRH MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0965 (Fisher's exact test), Q value = 1

Table S798. Gene #100: 'SHPRH MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
SHPRH MUTATED	3	1	8
SHPRH WILD-TYPE	34	15	23

'SHPRH MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0942 (Fisher's exact test), Q value = 1

Table S799. Gene #100: 'SHPRH MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
SHPRH MUTATED	3	6	3
SHPRH WILD-TYPE	35	14	23

'SHPRH MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.13 (Fisher's exact test), Q value = 1

Table S800. Gene #100: 'SHPRH MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
SHPRH MUTATED	7	1	4
SHPRH WILD-TYPE	20	18	34

'ZNF337 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.434 (Fisher's exact test), Q value = 1

Table S801. Gene #101: 'ZNF337 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
ZNF337 MUTATED	4	4	4
ZNF337 WILD-TYPE	20	41	17

'ZNF337 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.577 (Fisher's exact test), Q value = 1

Table S802. Gene #101: 'ZNF337 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
ZNF337 MUTATED	5	3	4
ZNF337 WILD-TYPE	26	32	20

'ZNF337 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.779 (Fisher's exact test), Q value = 1

Table S803. Gene #101: 'ZNF337 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
ZNF337 MUTATED	7	3	2
ZNF337 WILD-TYPE	33	22	17

'ZNF337 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.185 (Fisher's exact test), Q value = 1

Table S804. Gene #101: 'ZNF337 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
ZNF337 MUTATED	1	4	7
ZNF337 WILD-TYPE	0	27	45

'ZNF337 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.766 (Fisher's exact test), Q value = 1

Table S805. Gene #101: 'ZNF337 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
ZNF337 MUTATED	5	4	1	2
ZNF337 WILD-TYPE	26	16	10	20

'ZNF337 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.776 (Fisher's exact test), Q value = 1

Table S806. Gene #101: 'ZNF337 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
ZNF337 MUTATED	6	1	5
ZNF337 WILD-TYPE	31	15	26

'ZNF337 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S807. Gene #101: 'ZNF337 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
ZNF337 MUTATED	5	3	4
ZNF337 WILD-TYPE	33	17	22

'ZNF337 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.481 (Fisher's exact test), Q value = 1

Table S808. Gene #101: 'ZNF337 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
ZNF337 MUTATED	5	1	6
ZNF337 WILD-TYPE	22	18	32

'NGEF MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0836 (Fisher's exact test), Q value = 1

Table S809. Gene #102: 'NGEF MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
NGEF MUTATED	4	2	0
NGEF WILD-TYPE	20	43	21

'NGEF MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.76 (Fisher's exact test), Q value = 1

Table S810. Gene #102: 'NGEF MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
NGEF MUTATED	3	2	1
NGEF WILD-TYPE	28	33	23

'NGEF MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.861 (Fisher's exact test), Q value = 1

Table S811. Gene #102: 'NGEF MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
NGEF MUTATED	4	1	1
NGEF WILD-TYPE	36	24	18

'NGEF MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S812. Gene #102: 'NGEF MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
NGEF MUTATED	0	2	4
NGEF WILD-TYPE	1	29	48

'NGEF MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.616 (Fisher's exact test), Q value = 1

Table S813. Gene #102: 'NGEF MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
NGEF MUTATED	4	1	0	1
NGEF WILD-TYPE	27	19	11	21

'NGEF MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.563 (Fisher's exact test), Q value = 1

Table S814. Gene #102: 'NGEF MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
NGEF MUTATED	4	1	1
NGEF WILD-TYPE	33	15	30

'NGEF MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.656 (Fisher's exact test), Q value = 1

Table S815. Gene #102: 'NGEF MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
NGEF MUTATED	4	1	1
NGEF WILD-TYPE	34	19	25

'NGEF MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.566 (Fisher's exact test), Q value = 1

Table S816. Gene #102: 'NGEF MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
NGEF MUTATED	1	1	4
NGEF WILD-TYPE	26	18	34

'BCL2L1 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S817. Gene #103: 'BCL2L1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
BCL2L1 MUTATED	2	4	1
BCL2L1 WILD-TYPE	22	41	20

'BCL2L1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S818. Gene #103: 'BCL2L1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
BCL2L1 MUTATED	2	3	2
BCL2L1 WILD-TYPE	29	32	22

'BCL2L1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.885 (Fisher's exact test), Q value = 1

Table S819. Gene #103: 'BCL2L1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
BCL2L1 MUTATED	3	2	2
BCL2L1 WILD-TYPE	37	23	17

'BCL2L1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S820. Gene #103: 'BCL2L1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
BCL2L1 MUTATED	0	3	4
BCL2L1 WILD-TYPE	1	28	48

'BCL2L1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.279 (Fisher's exact test), Q value = 1

Table S821. Gene #103: 'BCL2L1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
BCL2L1 MUTATED	1	1	1	4
BCL2L1 WILD-TYPE	30	19	10	18

'BCL2L1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.877 (Fisher's exact test), Q value = 1

Table S822. Gene #103: 'BCL2L1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
BCL2L1 MUTATED	4	1	2
BCL2L1 WILD-TYPE	33	15	29

'BCL2L1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.779 (Fisher's exact test), Q value = 1

Table S823. Gene #103: 'BCL2L1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
BCL2L1 MUTATED	3	1	3
BCL2L1 WILD-TYPE	35	19	23

'BCL2L1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.888 (Fisher's exact test), Q value = 1

Table S824. Gene #103: 'BCL2L1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
BCL2L1 MUTATED	2	1	4
BCL2L1 WILD-TYPE	25	18	34

'RBM15B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.827 (Fisher's exact test), Q value = 1

Table S825. Gene #104: 'RBM15B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
RBM15B MUTATED	2	5	3
RBM15B WILD-TYPE	22	40	18

'RBM15B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.639 (Fisher's exact test), Q value = 1

Table S826. Gene #104: 'RBM15B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
RBM15B MUTATED	5	3	2
RBM15B WILD-TYPE	26	32	22

'RBM15B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0519 (Fisher's exact test), Q value = 1

Table S827. Gene #104: 'RBM15B MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
RBM15B MUTATED	7	0	3
RBM15B WILD-TYPE	33	25	16

'RBM15B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.768 (Fisher's exact test), Q value = 1

Table S828. Gene #104: 'RBM15B MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
RBM15B MUTATED	0	3	7
RBM15B WILD-TYPE	1	28	45

'RBM15B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.497 (Fisher's exact test), Q value = 1

Table S829. Gene #104: 'RBM15B MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
RBM15B MUTATED	6	1	1	2
RBM15B WILD-TYPE	25	19	10	20

'RBM15B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.452 (Fisher's exact test), Q value = 1

Table S830. Gene #104: 'RBM15B MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
RBM15B MUTATED	6	2	2
RBM15B WILD-TYPE	31	14	29

'RBM15B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.314 (Fisher's exact test), Q value = 1

Table S831. Gene #104: 'RBM15B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
RBM15B MUTATED	7	1	2
RBM15B WILD-TYPE	31	19	24

'RBM15B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.252 (Fisher's exact test), Q value = 1

Table S832. Gene #104: 'RBM15B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
RBM15B MUTATED	1	2	7
RBM15B WILD-TYPE	26	17	31

'THBS4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.203 (Fisher's exact test), Q value = 1

Table S833. Gene #105: 'THBS4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
THBS4 MUTATED	5	13	2
THBS4 WILD-TYPE	19	32	19

'THBS4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.352 (Fisher's exact test), Q value = 1

Table S834. Gene #105: 'THBS4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
THBS4 MUTATED	5	11	5
THBS4 WILD-TYPE	26	24	19

'THBS4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.517 (Fisher's exact test), Q value = 1

Table S835. Gene #105: 'THBS4 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
THBS4 MUTATED	8	8	5
THBS4 WILD-TYPE	32	17	14

'THBS4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0295 (Fisher's exact test), Q value = 1

Table S836. Gene #105: 'THBS4 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
THBS4 MUTATED	1	11	9
THBS4 WILD-TYPE	0	20	43

Figure S59. Get High-res Image Gene #105: 'THBS4 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'THBS4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.454 (Fisher's exact test), Q value = 1

Table S837. Gene #105: 'THBS4 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
THBS4 MUTATED	5	7	3	6
THBS4 WILD-TYPE	26	13	8	16

'THBS4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.471 (Fisher's exact test), Q value = 1

Table S838. Gene #105: 'THBS4 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
THBS4 MUTATED	7	4	10
THBS4 WILD-TYPE	30	12	21

'THBS4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.407 (Fisher's exact test), Q value = 1

Table S839. Gene #105: 'THBS4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
THBS4 MUTATED	7	6	8
THBS4 WILD-TYPE	31	14	18

'THBS4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.141 (Fisher's exact test), Q value = 1

Table S840. Gene #105: 'THBS4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
THBS4 MUTATED	10	5	6
THBS4 WILD-TYPE	17	14	32

'PVRL1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0707 (Fisher's exact test), Q value = 1

Table S841. Gene #106: 'PVRL1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
PVRL1 MUTATED	1	10	1
PVRL1 WILD-TYPE	23	35	20

'PVRL1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.122 (Fisher's exact test), Q value = 1

Table S842. Gene #106: 'PVRL1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
PVRL1 MUTATED	2	8	2
PVRL1 WILD-TYPE	29	27	22

'PVRL1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.278 (Fisher's exact test), Q value = 1

Table S843. Gene #106: 'PVRL1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
PVRL1 MUTATED	4	3	5
PVRL1 WILD-TYPE	36	22	14

'PVRL1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0029 (Fisher's exact test), Q value = 1

Table S844. Gene #106: 'PVRL1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
PVRL1 MUTATED	1	8	3
PVRL1 WILD-TYPE	0	23	49

Figure S60. Get High-res Image Gene #106: 'PVRL1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'PVRL1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.052 (Fisher's exact test), Q value = 1

Table S845. Gene #106: 'PVRL1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
PVRL1 MUTATED	1	5	3	3
PVRL1 WILD-TYPE	30	15	8	19

'PVRL1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.337 (Fisher's exact test), Q value = 1

Table S846. Gene #106: 'PVRL1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
PVRL1 MUTATED	3	3	6
PVRL1 WILD-TYPE	34	13	25

'PVRL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.203 (Fisher's exact test), Q value = 1

Table S847. Gene #106: 'PVRL1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
PVRL1 MUTATED	3	3	6
PVRL1 WILD-TYPE	35	17	20

'PVRL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.219 (Fisher's exact test), Q value = 1

Table S848. Gene #106: 'PVRL1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
PVRL1 MUTATED	6	3	3
PVRL1 WILD-TYPE	21	16	35

'PVRL2 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S849. Gene #107: 'PVRL2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
PVRL2 MUTATED	3	6	2
PVRL2 WILD-TYPE	21	39	19

'PVRL2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.849 (Fisher's exact test), Q value = 1

Table S850. Gene #107: 'PVRL2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
PVRL2 MUTATED	4	5	2
PVRL2 WILD-TYPE	27	30	22

'PVRL2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.703 (Fisher's exact test), Q value = 1

Table S851. Gene #107: 'PVRL2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
PVRL2 MUTATED	6	2	3
PVRL2 WILD-TYPE	34	23	16

'PVRL2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0783 (Fisher's exact test), Q value = 1

Table S852. Gene #107: 'PVRL2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
PVRL2 MUTATED	1	5	5
PVRL2 WILD-TYPE	0	26	47

'PVRL2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.858 (Fisher's exact test), Q value = 1

Table S853. Gene #107: 'PVRL2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
PVRL2 MUTATED	4	3	2	2
PVRL2 WILD-TYPE	27	17	9	20

'PVRL2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.645 (Fisher's exact test), Q value = 1

Table S854. Gene #107: 'PVRL2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
PVRL2 MUTATED	4	3	4
PVRL2 WILD-TYPE	33	13	27

'PVRL2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.77 (Fisher's exact test), Q value = 1

Table S855. Gene #107: 'PVRL2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
PVRL2 MUTATED	4	3	4
PVRL2 WILD-TYPE	34	17	22

'PVRL2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.768 (Fisher's exact test), Q value = 1

Table S856. Gene #107: 'PVRL2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
PVRL2 MUTATED	4	3	4
PVRL2 WILD-TYPE	23	16	34

'TNNI3K MUTATION STATUS' versus 'CN_CNMF'

P value = 0.856 (Fisher's exact test), Q value = 1

Table S857. Gene #108: 'TNNI3K MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
TNNI3K MUTATED	4	7	2
TNNI3K WILD-TYPE	20	38	19

'TNNI3K MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.334 (Fisher's exact test), Q value = 1

Table S858. Gene #108: 'TNNI3K MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
TNNI3K MUTATED	7	4	2
TNNI3K WILD-TYPE	24	31	22

'TNNI3K MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.494 (Fisher's exact test), Q value = 1

Table S859. Gene #108: 'TNNI3K MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
TNNI3K MUTATED	7	2	4
TNNI3K WILD-TYPE	33	23	15

'TNNI3K MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.171 (Fisher's exact test), Q value = 1

Table S860. Gene #108: 'TNNI3K MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
TNNI3K MUTATED	1	5	7
TNNI3K WILD-TYPE	0	26	45

'TNNI3K MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.903 (Fisher's exact test), Q value = 1

Table S861. Gene #108: 'TNNI3K MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
TNNI3K MUTATED	5	4	1	3
TNNI3K WILD-TYPE	26	16	10	19

'TNNI3K MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.875 (Fisher's exact test), Q value = 1

Table S862. Gene #108: 'TNNI3K MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
TNNI3K MUTATED	5	3	5
TNNI3K WILD-TYPE	32	13	26

'TNNI3K MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.805 (Fisher's exact test), Q value = 1

Table S863. Gene #108: 'TNNI3K MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
TNNI3K MUTATED	5	4	4
TNNI3K WILD-TYPE	33	16	22

'TNNI3K MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S864. Gene #108: 'TNNI3K MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
TNNI3K MUTATED	4	3	6
TNNI3K WILD-TYPE	23	16	32

'NEDD4L MUTATION STATUS' versus 'CN_CNMF'

P value = 0.405 (Fisher's exact test), Q value = 1

Table S865. Gene #109: 'NEDD4L MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
NEDD4L MUTATED	1	7	3
NEDD4L WILD-TYPE	23	38	18

'NEDD4L MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.507 (Fisher's exact test), Q value = 1

Table S866. Gene #109: 'NEDD4L MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
NEDD4L MUTATED	2	5	4
NEDD4L WILD-TYPE	29	30	20

'NEDD4L MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.542 (Fisher's exact test), Q value = 1

Table S867. Gene #109: 'NEDD4L MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
NEDD4L MUTATED	4	5	2
NEDD4L WILD-TYPE	36	20	17

'NEDD4L MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0783 (Fisher's exact test), Q value = 1

Table S868. Gene #109: 'NEDD4L MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
NEDD4L MUTATED	1	5	5
NEDD4L WILD-TYPE	0	26	47

'NEDD4L MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0472 (Fisher's exact test), Q value = 1

Table S869. Gene #109: 'NEDD4L MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
NEDD4L MUTATED	2	6	2	1
NEDD4L WILD-TYPE	29	14	9	21

Figure S61. Get High-res Image Gene #109: 'NEDD4L MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

'NEDD4L MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0815 (Fisher's exact test), Q value = 1

Table S870. Gene #109: 'NEDD4L MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
NEDD4L MUTATED	4	0	7
NEDD4L WILD-TYPE	33	16	24

'NEDD4L MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.313 (Fisher's exact test), Q value = 1

Table S871. Gene #109: 'NEDD4L MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
NEDD4L MUTATED	3	4	4
NEDD4L WILD-TYPE	35	16	22

'NEDD4L MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0363 (Fisher's exact test), Q value = 1

Table S872. Gene #109: 'NEDD4L MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
NEDD4L MUTATED	7	0	4
NEDD4L WILD-TYPE	20	19	34

Figure S62. Get High-res Image Gene #109: 'NEDD4L MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

'IRX4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0895 (Fisher's exact test), Q value = 1

Table S873. Gene #110: 'IRX4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
IRX4 MUTATED	7	6	1
IRX4 WILD-TYPE	17	39	20

'IRX4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.57 (Fisher's exact test), Q value = 1

Table S874. Gene #110: 'IRX4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
IRX4 MUTATED	6	6	2
IRX4 WILD-TYPE	25	29	22

'IRX4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.647 (Fisher's exact test), Q value = 1

Table S875. Gene #110: 'IRX4 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
IRX4 MUTATED	7	3	4
IRX4 WILD-TYPE	33	22	15

'IRX4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.395 (Fisher's exact test), Q value = 1

Table S876. Gene #110: 'IRX4 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
IRX4 MUTATED	0	7	7
IRX4 WILD-TYPE	1	24	45

'IRX4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.317 (Fisher's exact test), Q value = 1

Table S877. Gene #110: 'IRX4 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
IRX4 MUTATED	7	4	2	1
IRX4 WILD-TYPE	24	16	9	21

'IRX4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.735 (Fisher's exact test), Q value = 1

Table S878. Gene #110: 'IRX4 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
IRX4 MUTATED	7	3	4
IRX4 WILD-TYPE	30	13	27

'IRX4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.608 (Fisher's exact test), Q value = 1

Table S879. Gene #110: 'IRX4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
IRX4 MUTATED	8	2	4
IRX4 WILD-TYPE	30	18	22

'IRX4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.932 (Fisher's exact test), Q value = 1

Table S880. Gene #110: 'IRX4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
IRX4 MUTATED	4	3	7
IRX4 WILD-TYPE	23	16	31

'GTF3C3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.868 (Fisher's exact test), Q value = 1

Table S881. Gene #111: 'GTF3C3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
GTF3C3 MUTATED	1	4	1
GTF3C3 WILD-TYPE	23	41	20

'GTF3C3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.163 (Fisher's exact test), Q value = 1

Table S882. Gene #111: 'GTF3C3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
GTF3C3 MUTATED	0	4	2
GTF3C3 WILD-TYPE	31	31	22

'GTF3C3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.258 (Fisher's exact test), Q value = 1

Table S883. Gene #111: 'GTF3C3 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
GTF3C3 MUTATED	1	3	2
GTF3C3 WILD-TYPE	39	22	17

'GTF3C3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S884. Gene #111: 'GTF3C3 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
GTF3C3 MUTATED	0	2	4
GTF3C3 WILD-TYPE	1	29	48

'GTF3C3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.498 (Fisher's exact test), Q value = 1

Table S885. Gene #111: 'GTF3C3 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
GTF3C3 MUTATED	1	1	1	3
GTF3C3 WILD-TYPE	30	19	10	19

'GTF3C3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.74 (Fisher's exact test), Q value = 1

Table S886. Gene #111: 'GTF3C3 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
GTF3C3 MUTATED	2	2	2
GTF3C3 WILD-TYPE	35	14	29

'GTF3C3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.307 (Fisher's exact test), Q value = 1

Table S887. Gene #111: 'GTF3C3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
GTF3C3 MUTATED	1	2	3
GTF3C3 WILD-TYPE	37	18	23

'GTF3C3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.862 (Fisher's exact test), Q value = 1

Table S888. Gene #111: 'GTF3C3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
GTF3C3 MUTATED	2	2	2
GTF3C3 WILD-TYPE	25	17	36

'NAP1L3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.473 (Fisher's exact test), Q value = 1

Table S889. Gene #112: 'NAP1L3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
NAP1L3 MUTATED	2	4	0
NAP1L3 WILD-TYPE	22	41	21

'NAP1L3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.322 (Fisher's exact test), Q value = 1

Table S890. Gene #112: 'NAP1L3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
NAP1L3 MUTATED	3	3	0
NAP1L3 WILD-TYPE	28	32	24

'NAP1L3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.755 (Fisher's exact test), Q value = 1

Table S891. Gene #112: 'NAP1L3 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
NAP1L3 MUTATED	3	1	2
NAP1L3 WILD-TYPE	37	24	17

'NAP1L3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.69 (Fisher's exact test), Q value = 1

Table S892. Gene #112: 'NAP1L3 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
NAP1L3 MUTATED	0	3	3
NAP1L3 WILD-TYPE	1	28	49

'NAP1L3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.472 (Fisher's exact test), Q value = 1

Table S893. Gene #112: 'NAP1L3 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
NAP1L3 MUTATED	3	2	1	0
NAP1L3 WILD-TYPE	28	18	10	22

'NAP1L3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.858 (Fisher's exact test), Q value = 1

Table S894. Gene #112: 'NAP1L3 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
NAP1L3 MUTATED	2	1	3
NAP1L3 WILD-TYPE	35	15	28

'NAP1L3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.758 (Fisher's exact test), Q value = 1

Table S895. Gene #112: 'NAP1L3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
NAP1L3 MUTATED	3	2	1
NAP1L3 WILD-TYPE	35	18	25

'NAP1L3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S896. Gene #112: 'NAP1L3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
NAP1L3 MUTATED	2	1	3
NAP1L3 WILD-TYPE	25	18	35

'TMEM40 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.374 (Fisher's exact test), Q value = 1

Table S897. Gene #113: 'TMEM40 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
TMEM40 MUTATED	2	8	5
TMEM40 WILD-TYPE	22	37	16

'TMEM40 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.327 (Fisher's exact test), Q value = 1

Table S898. Gene #113: 'TMEM40 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
TMEM40 MUTATED	4	9	3
TMEM40 WILD-TYPE	27	26	21

'TMEM40 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.329 (Fisher's exact test), Q value = 1

Table S899. Gene #113: 'TMEM40 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
TMEM40 MUTATED	6	4	6
TMEM40 WILD-TYPE	34	21	13

'TMEM40 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.614 (Fisher's exact test), Q value = 1

Table S900. Gene #113: 'TMEM40 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
TMEM40 MUTATED	0	7	9
TMEM40 WILD-TYPE	1	24	43

'TMEM40 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.148 (Fisher's exact test), Q value = 1

Table S901. Gene #113: 'TMEM40 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
TMEM40 MUTATED	4	3	5	4
TMEM40 WILD-TYPE	27	17	6	18

'TMEM40 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.684 (Fisher's exact test), Q value = 1

Table S902. Gene #113: 'TMEM40 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
TMEM40 MUTATED	6	4	6
TMEM40 WILD-TYPE	31	12	25

'TMEM40 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.428 (Fisher's exact test), Q value = 1

Table S903. Gene #113: 'TMEM40 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
TMEM40 MUTATED	5	5	6
TMEM40 WILD-TYPE	33	15	20

'TMEM40 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.76 (Fisher's exact test), Q value = 1

Table S904. Gene #113: 'TMEM40 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
TMEM40 MUTATED	6	4	6
TMEM40 WILD-TYPE	21	15	32

'MED9 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.59 (Fisher's exact test), Q value = 1

Table S905. Gene #114: 'MED9 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
MED9 MUTATED	6	7	3
MED9 WILD-TYPE	18	38	18

'MED9 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.546 (Fisher's exact test), Q value = 1

Table S906. Gene #114: 'MED9 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
MED9 MUTATED	6	5	6
MED9 WILD-TYPE	25	30	18

'MED9 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.683 (Fisher's exact test), Q value = 1

Table S907. Gene #114: 'MED9 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
MED9 MUTATED	8	4	5
MED9 WILD-TYPE	32	21	14

'MED9 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.168 (Fisher's exact test), Q value = 1

Table S908. Gene #114: 'MED9 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
MED9 MUTATED	1	7	9
MED9 WILD-TYPE	0	24	43

'MED9 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0919 (Fisher's exact test), Q value = 1

Table S909. Gene #114: 'MED9 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
MED9 MUTATED	5	5	5	2
MED9 WILD-TYPE	26	15	6	20

'MED9 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.877 (Fisher's exact test), Q value = 1

Table S910. Gene #114: 'MED9 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
MED9 MUTATED	7	4	6
MED9 WILD-TYPE	30	12	25

'MED9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.456 (Fisher's exact test), Q value = 1

Table S911. Gene #114: 'MED9 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
MED9 MUTATED	6	6	5
MED9 WILD-TYPE	32	14	21

'MED9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.915 (Fisher's exact test), Q value = 1

Table S912. Gene #114: 'MED9 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
MED9 MUTATED	6	4	7
MED9 WILD-TYPE	21	15	31

'ZNF608 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0699 (Fisher's exact test), Q value = 1

Table S913. Gene #115: 'ZNF608 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
ZNF608 MUTATED	1	11	2
ZNF608 WILD-TYPE	23	34	19

'ZNF608 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.521 (Fisher's exact test), Q value = 1

Table S914. Gene #115: 'ZNF608 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
ZNF608 MUTATED	3	7	4
ZNF608 WILD-TYPE	28	28	20

'ZNF608 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.445 (Fisher's exact test), Q value = 1

Table S915. Gene #115: 'ZNF608 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
ZNF608 MUTATED	6	3	5
ZNF608 WILD-TYPE	34	22	14

'ZNF608 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0581 (Fisher's exact test), Q value = 1

Table S916. Gene #115: 'ZNF608 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
ZNF608 MUTATED	1	7	6
ZNF608 WILD-TYPE	0	24	46

'ZNF608 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.62 (Fisher's exact test), Q value = 1

Table S917. Gene #115: 'ZNF608 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
ZNF608 MUTATED	4	4	3	3
ZNF608 WILD-TYPE	27	16	8	19

'ZNF608 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.371 (Fisher's exact test), Q value = 1

Table S918. Gene #115: 'ZNF608 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
ZNF608 MUTATED	4	4	6
ZNF608 WILD-TYPE	33	12	25

'ZNF608 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.413 (Fisher's exact test), Q value = 1

Table S919. Gene #115: 'ZNF608 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
ZNF608 MUTATED	4	4	6
ZNF608 WILD-TYPE	34	16	20

'ZNF608 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.301 (Fisher's exact test), Q value = 1

Table S920. Gene #115: 'ZNF608 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
ZNF608 MUTATED	5	5	4
ZNF608 WILD-TYPE	22	14	34

'DPAGT1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.837 (Fisher's exact test), Q value = 1

Table S921. Gene #116: 'DPAGT1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
DPAGT1 MUTATED	2	2	1
DPAGT1 WILD-TYPE	22	43	20

'DPAGT1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.849 (Fisher's exact test), Q value = 1

Table S922. Gene #116: 'DPAGT1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
DPAGT1 MUTATED	1	2	2
DPAGT1 WILD-TYPE	30	33	22

'DPAGT1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.359 (Fisher's exact test), Q value = 1

Table S923. Gene #116: 'DPAGT1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
DPAGT1 MUTATED	2	3	0
DPAGT1 WILD-TYPE	38	22	19

'DPAGT1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S924. Gene #116: 'DPAGT1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
DPAGT1 MUTATED	0	2	3
DPAGT1 WILD-TYPE	1	29	49

'DPAGT1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.633 (Fisher's exact test), Q value = 1

Table S925. Gene #116: 'DPAGT1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
DPAGT1 MUTATED	1	2	0	2
DPAGT1 WILD-TYPE	30	18	11	20

'DPAGT1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.598 (Fisher's exact test), Q value = 1

Table S926. Gene #116: 'DPAGT1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
DPAGT1 MUTATED	2	0	3
DPAGT1 WILD-TYPE	35	16	28

'DPAGT1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.111 (Fisher's exact test), Q value = 1

Table S927. Gene #116: 'DPAGT1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
DPAGT1 MUTATED	2	3	0
DPAGT1 WILD-TYPE	36	17	26

'DPAGT1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.365 (Fisher's exact test), Q value = 1

Table S928. Gene #116: 'DPAGT1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
DPAGT1 MUTATED	3	0	2
DPAGT1 WILD-TYPE	24	19	36

'IFNGR2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.261 (Fisher's exact test), Q value = 1

Table S929. Gene #117: 'IFNGR2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
IFNGR2 MUTATED	6	5	2
IFNGR2 WILD-TYPE	18	40	19

'IFNGR2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.746 (Fisher's exact test), Q value = 1

Table S930. Gene #117: 'IFNGR2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
IFNGR2 MUTATED	6	4	3
IFNGR2 WILD-TYPE	25	31	21

'IFNGR2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.925 (Fisher's exact test), Q value = 1

Table S931. Gene #117: 'IFNGR2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
IFNGR2 MUTATED	7	3	3
IFNGR2 WILD-TYPE	33	22	16

'IFNGR2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.796 (Fisher's exact test), Q value = 1

Table S932. Gene #117: 'IFNGR2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
IFNGR2 MUTATED	0	4	9
IFNGR2 WILD-TYPE	1	27	43

'IFNGR2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.563 (Fisher's exact test), Q value = 1

Table S933. Gene #117: 'IFNGR2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
IFNGR2 MUTATED	7	2	2	2
IFNGR2 WILD-TYPE	24	18	9	20

'IFNGR2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.723 (Fisher's exact test), Q value = 1

Table S934. Gene #117: 'IFNGR2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
IFNGR2 MUTATED	7	2	4
IFNGR2 WILD-TYPE	30	14	27

'IFNGR2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.865 (Fisher's exact test), Q value = 1

Table S935. Gene #117: 'IFNGR2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
IFNGR2 MUTATED	7	3	3
IFNGR2 WILD-TYPE	31	17	23

'IFNGR2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.801 (Fisher's exact test), Q value = 1

Table S936. Gene #117: 'IFNGR2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
IFNGR2 MUTATED	4	2	7
IFNGR2 WILD-TYPE	23	17	31

'PPARGC1B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.139 (Fisher's exact test), Q value = 1

Table S937. Gene #118: 'PPARGC1B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
PPARGC1B MUTATED	1	8	5
PPARGC1B WILD-TYPE	23	37	16

'PPARGC1B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.43 (Fisher's exact test), Q value = 1

Table S938. Gene #118: 'PPARGC1B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
PPARGC1B MUTATED	3	7	5
PPARGC1B WILD-TYPE	28	28	19

'PPARGC1B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.528 (Fisher's exact test), Q value = 1

Table S939. Gene #118: 'PPARGC1B MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
PPARGC1B MUTATED	6	4	5
PPARGC1B WILD-TYPE	34	21	14

'PPARGC1B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0307 (Fisher's exact test), Q value = 1

Table S940. Gene #118: 'PPARGC1B MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
PPARGC1B MUTATED	1	8	6
PPARGC1B WILD-TYPE	0	23	46

Figure S63. Get High-res Image Gene #118: 'PPARGC1B MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'PPARGC1B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.515 (Fisher's exact test), Q value = 1

Table S941. Gene #118: 'PPARGC1B MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
PPARGC1B MUTATED	4	5	3	3
PPARGC1B WILD-TYPE	27	15	8	19

'PPARGC1B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.539 (Fisher's exact test), Q value = 1

Table S942. Gene #118: 'PPARGC1B MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
PPARGC1B MUTATED	5	4	6
PPARGC1B WILD-TYPE	32	12	25

'PPARGC1B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.328 (Fisher's exact test), Q value = 1

Table S943. Gene #118: 'PPARGC1B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
PPARGC1B MUTATED	5	6	4
PPARGC1B WILD-TYPE	33	14	22

'PPARGC1B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.617 (Fisher's exact test), Q value = 1

Table S944. Gene #118: 'PPARGC1B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
PPARGC1B MUTATED	6	4	5
PPARGC1B WILD-TYPE	21	15	33

'DHX57 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.416 (Fisher's exact test), Q value = 1

Table S945. Gene #119: 'DHX57 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
DHX57 MUTATED	3	12	4
DHX57 WILD-TYPE	21	33	17

'DHX57 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0222 (Fisher's exact test), Q value = 1

Table S946. Gene #119: 'DHX57 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
DHX57 MUTATED	2	11	7
DHX57 WILD-TYPE	29	24	17

Figure S64. Get High-res Image Gene #119: 'DHX57 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'DHX57 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.813 (Fisher's exact test), Q value = 1

Table S947. Gene #119: 'DHX57 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
DHX57 MUTATED	9	7	4
DHX57 WILD-TYPE	31	18	15

'DHX57 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.121 (Fisher's exact test), Q value = 1

Table S948. Gene #119: 'DHX57 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
DHX57 MUTATED	1	9	10
DHX57 WILD-TYPE	0	22	42

'DHX57 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.294 (Fisher's exact test), Q value = 1

Table S949. Gene #119: 'DHX57 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
DHX57 MUTATED	5	7	4	4
DHX57 WILD-TYPE	26	13	7	18

'DHX57 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.688 (Fisher's exact test), Q value = 1

Table S950. Gene #119: 'DHX57 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
DHX57 MUTATED	8	3	9
DHX57 WILD-TYPE	29	13	22

'DHX57 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.148 (Fisher's exact test), Q value = 1

Table S951. Gene #119: 'DHX57 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
DHX57 MUTATED	8	8	4
DHX57 WILD-TYPE	30	12	22

'DHX57 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.389 (Fisher's exact test), Q value = 1

Table S952. Gene #119: 'DHX57 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
DHX57 MUTATED	9	4	7
DHX57 WILD-TYPE	18	15	31

'TDRD6 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S953. Gene #120: 'TDRD6 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
TDRD6 MUTATED	3	6	3
TDRD6 WILD-TYPE	21	39	18

'TDRD6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S954. Gene #120: 'TDRD6 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
TDRD6 MUTATED	4	5	3
TDRD6 WILD-TYPE	27	30	21

'TDRD6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.278 (Fisher's exact test), Q value = 1

Table S955. Gene #120: 'TDRD6 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
TDRD6 MUTATED	4	3	5
TDRD6 WILD-TYPE	36	22	14

'TDRD6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.068 (Fisher's exact test), Q value = 1

Table S956. Gene #120: 'TDRD6 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
TDRD6 MUTATED	1	6	5
TDRD6 WILD-TYPE	0	25	47

'TDRD6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.649 (Fisher's exact test), Q value = 1

Table S957. Gene #120: 'TDRD6 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
TDRD6 MUTATED	4	2	3	3
TDRD6 WILD-TYPE	27	18	8	19

'TDRD6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.246 (Fisher's exact test), Q value = 1

Table S958. Gene #120: 'TDRD6 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
TDRD6 MUTATED	3	4	5
TDRD6 WILD-TYPE	34	12	26

'TDRD6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.374 (Fisher's exact test), Q value = 1

Table S959. Gene #120: 'TDRD6 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
TDRD6 MUTATED	4	2	6
TDRD6 WILD-TYPE	34	18	20

'TDRD6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.563 (Fisher's exact test), Q value = 1

Table S960. Gene #120: 'TDRD6 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
TDRD6 MUTATED	4	4	4
TDRD6 WILD-TYPE	23	15	34

'KRAS MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00635 (Fisher's exact test), Q value = 1

Table S961. Gene #121: 'KRAS MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
KRAS MUTATED	22	26	17
KRAS WILD-TYPE	2	19	4

Figure S65. Get High-res Image Gene #121: 'KRAS MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'KRAS MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1.62e-05 (Fisher's exact test), Q value = 0.061

Table S962. Gene #121: 'KRAS MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
KRAS MUTATED	27	15	22
KRAS WILD-TYPE	4	20	2

Figure S66. Get High-res Image Gene #121: 'KRAS MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'KRAS MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.251 (Fisher's exact test), Q value = 1

Table S963. Gene #121: 'KRAS MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
KRAS MUTATED	31	16	11
KRAS WILD-TYPE	9	9	8

'KRAS MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0156 (Fisher's exact test), Q value = 1

Table S964. Gene #121: 'KRAS MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
KRAS MUTATED	1	16	41
KRAS WILD-TYPE	0	15	11

Figure S67. Get High-res Image Gene #121: 'KRAS MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'KRAS MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0668 (Fisher's exact test), Q value = 1

Table S965. Gene #121: 'KRAS MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
KRAS MUTATED	26	14	7	11
KRAS WILD-TYPE	5	6	4	11

'KRAS MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.345 (Fisher's exact test), Q value = 1

Table S966. Gene #121: 'KRAS MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
KRAS MUTATED	28	9	21
KRAS WILD-TYPE	9	7	10

'KRAS MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.285 (Fisher's exact test), Q value = 1

Table S967. Gene #121: 'KRAS MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
KRAS MUTATED	29	14	15
KRAS WILD-TYPE	9	6	11

'KRAS MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0534 (Fisher's exact test), Q value = 1

Table S968. Gene #121: 'KRAS MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
KRAS MUTATED	17	10	31
KRAS WILD-TYPE	10	9	7

'CIR1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.717 (Fisher's exact test), Q value = 1

Table S969. Gene #122: 'CIR1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
CIR1 MUTATED	4	7	5
CIR1 WILD-TYPE	20	38	16

'CIR1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.905 (Fisher's exact test), Q value = 1

Table S970. Gene #122: 'CIR1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
CIR1 MUTATED	5	6	5
CIR1 WILD-TYPE	26	29	19

'CIR1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.628 (Fisher's exact test), Q value = 1

Table S971. Gene #122: 'CIR1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
CIR1 MUTATED	9	5	2
CIR1 WILD-TYPE	31	20	17

'CIR1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.115 (Fisher's exact test), Q value = 1

Table S972. Gene #122: 'CIR1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
CIR1 MUTATED	1	4	11
CIR1 WILD-TYPE	0	27	41

'CIR1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.94 (Fisher's exact test), Q value = 1

Table S973. Gene #122: 'CIR1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
CIR1 MUTATED	5	4	2	5
CIR1 WILD-TYPE	26	16	9	17

'CIR1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.88 (Fisher's exact test), Q value = 1

Table S974. Gene #122: 'CIR1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
CIR1 MUTATED	8	3	5
CIR1 WILD-TYPE	29	13	26

'CIR1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.61 (Fisher's exact test), Q value = 1

Table S975. Gene #122: 'CIR1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
CIR1 MUTATED	9	3	4
CIR1 WILD-TYPE	29	17	22

'CIR1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.938 (Fisher's exact test), Q value = 1

Table S976. Gene #122: 'CIR1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
CIR1 MUTATED	5	3	8
CIR1 WILD-TYPE	22	16	30

'ZMYM5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0777 (Fisher's exact test), Q value = 1

Table S977. Gene #123: 'ZMYM5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
ZMYM5 MUTATED	5	5	0
ZMYM5 WILD-TYPE	19	40	21

'ZMYM5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.639 (Fisher's exact test), Q value = 1

Table S978. Gene #123: 'ZMYM5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
ZMYM5 MUTATED	5	3	2
ZMYM5 WILD-TYPE	26	32	22

'ZMYM5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.458 (Fisher's exact test), Q value = 1

Table S979. Gene #123: 'ZMYM5 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
ZMYM5 MUTATED	7	2	1
ZMYM5 WILD-TYPE	33	23	18

'ZMYM5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.15 (Fisher's exact test), Q value = 1

Table S980. Gene #123: 'ZMYM5 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
ZMYM5 MUTATED	1	3	6
ZMYM5 WILD-TYPE	0	28	46

'ZMYM5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.65 (Fisher's exact test), Q value = 1

Table S981. Gene #123: 'ZMYM5 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
ZMYM5 MUTATED	5	3	1	1
ZMYM5 WILD-TYPE	26	17	10	21

'ZMYM5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.68 (Fisher's exact test), Q value = 1

Table S982. Gene #123: 'ZMYM5 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
ZMYM5 MUTATED	6	1	3
ZMYM5 WILD-TYPE	31	15	28

'ZMYM5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.314 (Fisher's exact test), Q value = 1

Table S983. Gene #123: 'ZMYM5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
ZMYM5 MUTATED	7	1	2
ZMYM5 WILD-TYPE	31	19	24

'ZMYM5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.571 (Fisher's exact test), Q value = 1

Table S984. Gene #123: 'ZMYM5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
ZMYM5 MUTATED	3	1	6
ZMYM5 WILD-TYPE	24	18	32

'TMEM184A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.787 (Fisher's exact test), Q value = 1

Table S985. Gene #124: 'TMEM184A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
TMEM184A MUTATED	5	10	3
TMEM184A WILD-TYPE	19	35	18

'TMEM184A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.488 (Fisher's exact test), Q value = 1

Table S986. Gene #124: 'TMEM184A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
TMEM184A MUTATED	8	7	3
TMEM184A WILD-TYPE	23	28	21

'TMEM184A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.658 (Fisher's exact test), Q value = 1

Table S987. Gene #124: 'TMEM184A MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
TMEM184A MUTATED	9	4	5
TMEM184A WILD-TYPE	31	21	14

'TMEM184A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.298 (Fisher's exact test), Q value = 1

Table S988. Gene #124: 'TMEM184A MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
TMEM184A MUTATED	1	6	11
TMEM184A WILD-TYPE	0	25	41

'TMEM184A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.981 (Fisher's exact test), Q value = 1

Table S989. Gene #124: 'TMEM184A MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
TMEM184A MUTATED	6	5	2	5
TMEM184A WILD-TYPE	25	15	9	17

'TMEM184A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.567 (Fisher's exact test), Q value = 1

Table S990. Gene #124: 'TMEM184A MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
TMEM184A MUTATED	7	5	6
TMEM184A WILD-TYPE	30	11	25

'TMEM184A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.904 (Fisher's exact test), Q value = 1

Table S991. Gene #124: 'TMEM184A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
TMEM184A MUTATED	8	5	5
TMEM184A WILD-TYPE	30	15	21

'TMEM184A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.722 (Fisher's exact test), Q value = 1

Table S992. Gene #124: 'TMEM184A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
TMEM184A MUTATED	6	5	7
TMEM184A WILD-TYPE	21	14	31

'BHLHB9 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.000893 (Fisher's exact test), Q value = 1

Table S993. Gene #125: 'BHLHB9 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
BHLHB9 MUTATED	5	0	5
BHLHB9 WILD-TYPE	19	45	16

Figure S68. Get High-res Image Gene #125: 'BHLHB9 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'BHLHB9 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00301 (Fisher's exact test), Q value = 1

Table S994. Gene #125: 'BHLHB9 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
BHLHB9 MUTATED	4	0	6
BHLHB9 WILD-TYPE	27	35	18

Figure S69. Get High-res Image Gene #125: 'BHLHB9 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'BHLHB9 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0342 (Fisher's exact test), Q value = 1

Table S995. Gene #125: 'BHLHB9 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
BHLHB9 MUTATED	8	0	2
BHLHB9 WILD-TYPE	32	25	17

Figure S70. Get High-res Image Gene #125: 'BHLHB9 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

'BHLHB9 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.191 (Fisher's exact test), Q value = 1

Table S996. Gene #125: 'BHLHB9 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
BHLHB9 MUTATED	0	1	9
BHLHB9 WILD-TYPE	1	30	43

'BHLHB9 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.183 (Fisher's exact test), Q value = 1

Table S997. Gene #125: 'BHLHB9 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
BHLHB9 MUTATED	6	0	1	3
BHLHB9 WILD-TYPE	25	20	10	19

'BHLHB9 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00525 (Fisher's exact test), Q value = 1

Table S998. Gene #125: 'BHLHB9 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
BHLHB9 MUTATED	9	1	0
BHLHB9 WILD-TYPE	28	15	31

Figure S71. Get High-res Image Gene #125: 'BHLHB9 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'BHLHB9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.115 (Fisher's exact test), Q value = 1

Table S999. Gene #125: 'BHLHB9 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
BHLHB9 MUTATED	7	0	3
BHLHB9 WILD-TYPE	31	20	23

'BHLHB9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00659 (Fisher's exact test), Q value = 1

Table S1000. Gene #125: 'BHLHB9 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
BHLHB9 MUTATED	0	1	9
BHLHB9 WILD-TYPE	27	18	29

Figure S72. Get High-res Image Gene #125: 'BHLHB9 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

'MAP3K7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.592 (Fisher's exact test), Q value = 1

Table S1001. Gene #126: 'MAP3K7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
MAP3K7 MUTATED	1	6	2
MAP3K7 WILD-TYPE	23	39	19

'MAP3K7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.743 (Fisher's exact test), Q value = 1

Table S1002. Gene #126: 'MAP3K7 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
MAP3K7 MUTATED	2	4	3
MAP3K7 WILD-TYPE	29	31	21

'MAP3K7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1003. Gene #126: 'MAP3K7 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
MAP3K7 MUTATED	4	3	2
MAP3K7 WILD-TYPE	36	22	17

'MAP3K7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0703 (Fisher's exact test), Q value = 1

Table S1004. Gene #126: 'MAP3K7 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
MAP3K7 MUTATED	1	4	4
MAP3K7 WILD-TYPE	0	27	48

'MAP3K7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.47 (Fisher's exact test), Q value = 1

Table S1005. Gene #126: 'MAP3K7 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
MAP3K7 MUTATED	2	4	1	2
MAP3K7 WILD-TYPE	29	16	10	20

'MAP3K7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.341 (Fisher's exact test), Q value = 1

Table S1006. Gene #126: 'MAP3K7 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
MAP3K7 MUTATED	2	2	5
MAP3K7 WILD-TYPE	35	14	26

'MAP3K7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.228 (Fisher's exact test), Q value = 1

Table S1007. Gene #126: 'MAP3K7 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
MAP3K7 MUTATED	2	4	3
MAP3K7 WILD-TYPE	36	16	23

'MAP3K7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.254 (Fisher's exact test), Q value = 1

Table S1008. Gene #126: 'MAP3K7 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
MAP3K7 MUTATED	5	2	2
MAP3K7 WILD-TYPE	22	17	36

'EME2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.3 (Fisher's exact test), Q value = 1

Table S1009. Gene #127: 'EME2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
EME2 MUTATED	1	7	1
EME2 WILD-TYPE	23	38	20

'EME2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.149 (Fisher's exact test), Q value = 1

Table S1010. Gene #127: 'EME2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
EME2 MUTATED	2	7	1
EME2 WILD-TYPE	29	28	23

'EME2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.502 (Fisher's exact test), Q value = 1

Table S1011. Gene #127: 'EME2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
EME2 MUTATED	3	4	3
EME2 WILD-TYPE	37	21	16

'EME2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0186 (Fisher's exact test), Q value = 1

Table S1012. Gene #127: 'EME2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
EME2 MUTATED	1	6	3
EME2 WILD-TYPE	0	25	49

Figure S73. Get High-res Image Gene #127: 'EME2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'EME2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.116 (Fisher's exact test), Q value = 1

Table S1013. Gene #127: 'EME2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
EME2 MUTATED	2	4	3	1
EME2 WILD-TYPE	29	16	8	21

'EME2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.227 (Fisher's exact test), Q value = 1

Table S1014. Gene #127: 'EME2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
EME2 MUTATED	2	3	5
EME2 WILD-TYPE	35	13	26

'EME2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.19 (Fisher's exact test), Q value = 1

Table S1015. Gene #127: 'EME2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
EME2 MUTATED	2	4	4
EME2 WILD-TYPE	36	16	22

'EME2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.515 (Fisher's exact test), Q value = 1

Table S1016. Gene #127: 'EME2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
EME2 MUTATED	4	3	3
EME2 WILD-TYPE	23	16	35

'TP53 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0122 (Fisher's exact test), Q value = 1

Table S1017. Gene #128: 'TP53 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
TP53 MUTATED	18	23	18
TP53 WILD-TYPE	6	22	3

Figure S74. Get High-res Image Gene #128: 'TP53 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'TP53 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00487 (Fisher's exact test), Q value = 1

Table S1018. Gene #128: 'TP53 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
TP53 MUTATED	26	16	16
TP53 WILD-TYPE	5	19	8

Figure S75. Get High-res Image Gene #128: 'TP53 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'TP53 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1019. Gene #128: 'TP53 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
TP53 MUTATED	26	16	12
TP53 WILD-TYPE	14	9	7

'TP53 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0891 (Fisher's exact test), Q value = 1

Table S1020. Gene #128: 'TP53 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
TP53 MUTATED	0	17	37
TP53 WILD-TYPE	1	14	15

'TP53 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.21 (Fisher's exact test), Q value = 1

Table S1021. Gene #128: 'TP53 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
TP53 MUTATED	24	12	7	11
TP53 WILD-TYPE	7	8	4	11

'TP53 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.83 (Fisher's exact test), Q value = 1

Table S1022. Gene #128: 'TP53 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
TP53 MUTATED	25	10	19
TP53 WILD-TYPE	12	6	12

'TP53 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.371 (Fisher's exact test), Q value = 1

Table S1023. Gene #128: 'TP53 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
TP53 MUTATED	27	13	14
TP53 WILD-TYPE	11	7	12

'TP53 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.237 (Fisher's exact test), Q value = 1

Table S1024. Gene #128: 'TP53 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
TP53 MUTATED	16	10	28
TP53 WILD-TYPE	11	9	10

'ALS2CR11 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.134 (Fisher's exact test), Q value = 1

Table S1025. Gene #129: 'ALS2CR11 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
ALS2CR11 MUTATED	1	9	5
ALS2CR11 WILD-TYPE	23	36	16

'ALS2CR11 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.43 (Fisher's exact test), Q value = 1

Table S1026. Gene #129: 'ALS2CR11 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
ALS2CR11 MUTATED	3	7	5
ALS2CR11 WILD-TYPE	28	28	19

'ALS2CR11 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.387 (Fisher's exact test), Q value = 1

Table S1027. Gene #129: 'ALS2CR11 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
ALS2CR11 MUTATED	5	5	5
ALS2CR11 WILD-TYPE	35	20	14

'ALS2CR11 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0307 (Fisher's exact test), Q value = 1

Table S1028. Gene #129: 'ALS2CR11 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
ALS2CR11 MUTATED	1	8	6
ALS2CR11 WILD-TYPE	0	23	46

Figure S76. Get High-res Image Gene #129: 'ALS2CR11 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'ALS2CR11 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.211 (Fisher's exact test), Q value = 1

Table S1029. Gene #129: 'ALS2CR11 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
ALS2CR11 MUTATED	3	3	4	5
ALS2CR11 WILD-TYPE	28	17	7	17

'ALS2CR11 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.261 (Fisher's exact test), Q value = 1

Table S1030. Gene #129: 'ALS2CR11 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
ALS2CR11 MUTATED	4	4	7
ALS2CR11 WILD-TYPE	33	12	24

'ALS2CR11 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.285 (Fisher's exact test), Q value = 1

Table S1031. Gene #129: 'ALS2CR11 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
ALS2CR11 MUTATED	4	5	6
ALS2CR11 WILD-TYPE	34	15	20

'ALS2CR11 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.283 (Fisher's exact test), Q value = 1

Table S1032. Gene #129: 'ALS2CR11 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
ALS2CR11 MUTATED	6	5	4
ALS2CR11 WILD-TYPE	21	14	34

'SALL1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0713 (Fisher's exact test), Q value = 1

Table S1033. Gene #130: 'SALL1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
SALL1 MUTATED	4	9	0
SALL1 WILD-TYPE	20	36	21

'SALL1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.233 (Fisher's exact test), Q value = 1

Table S1034. Gene #130: 'SALL1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
SALL1 MUTATED	4	7	1
SALL1 WILD-TYPE	27	28	23

'SALL1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1035. Gene #130: 'SALL1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
SALL1 MUTATED	6	3	3
SALL1 WILD-TYPE	34	22	16

'SALL1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.147 (Fisher's exact test), Q value = 1

Table S1036. Gene #130: 'SALL1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
SALL1 MUTATED	1	5	6
SALL1 WILD-TYPE	0	26	46

'SALL1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.649 (Fisher's exact test), Q value = 1

Table S1037. Gene #130: 'SALL1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
SALL1 MUTATED	4	2	3	3
SALL1 WILD-TYPE	27	18	8	19

'SALL1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.592 (Fisher's exact test), Q value = 1

Table S1038. Gene #130: 'SALL1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
SALL1 MUTATED	4	2	6
SALL1 WILD-TYPE	33	14	25

'SALL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.616 (Fisher's exact test), Q value = 1

Table S1039. Gene #130: 'SALL1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
SALL1 MUTATED	4	3	5
SALL1 WILD-TYPE	34	17	21

'SALL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.665 (Fisher's exact test), Q value = 1

Table S1040. Gene #130: 'SALL1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
SALL1 MUTATED	5	3	4
SALL1 WILD-TYPE	22	16	34

'ZMIZ1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.778 (Fisher's exact test), Q value = 1

Table S1041. Gene #131: 'ZMIZ1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
ZMIZ1 MUTATED	4	10	3
ZMIZ1 WILD-TYPE	20	35	18

'ZMIZ1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.939 (Fisher's exact test), Q value = 1

Table S1042. Gene #131: 'ZMIZ1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
ZMIZ1 MUTATED	6	6	5
ZMIZ1 WILD-TYPE	25	29	19

'ZMIZ1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.447 (Fisher's exact test), Q value = 1

Table S1043. Gene #131: 'ZMIZ1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
ZMIZ1 MUTATED	9	3	5
ZMIZ1 WILD-TYPE	31	22	14

'ZMIZ1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.281 (Fisher's exact test), Q value = 1

Table S1044. Gene #131: 'ZMIZ1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
ZMIZ1 MUTATED	1	6	10
ZMIZ1 WILD-TYPE	0	25	42

'ZMIZ1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.284 (Fisher's exact test), Q value = 1

Table S1045. Gene #131: 'ZMIZ1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
ZMIZ1 MUTATED	4	3	4	6
ZMIZ1 WILD-TYPE	27	17	7	16

'ZMIZ1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.697 (Fisher's exact test), Q value = 1

Table S1046. Gene #131: 'ZMIZ1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
ZMIZ1 MUTATED	8	4	5
ZMIZ1 WILD-TYPE	29	12	26

'ZMIZ1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.549 (Fisher's exact test), Q value = 1

Table S1047. Gene #131: 'ZMIZ1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
ZMIZ1 MUTATED	6	4	7
ZMIZ1 WILD-TYPE	32	16	19

'ZMIZ1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.751 (Fisher's exact test), Q value = 1

Table S1048. Gene #131: 'ZMIZ1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
ZMIZ1 MUTATED	5	5	7
ZMIZ1 WILD-TYPE	22	14	31

'ESCO2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.302 (Fisher's exact test), Q value = 1

Table S1049. Gene #132: 'ESCO2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
ESCO2 MUTATED	3	5	0
ESCO2 WILD-TYPE	21	40	21

'ESCO2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.141 (Fisher's exact test), Q value = 1

Table S1050. Gene #132: 'ESCO2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
ESCO2 MUTATED	3	5	0
ESCO2 WILD-TYPE	28	30	24

'ESCO2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.495 (Fisher's exact test), Q value = 1

Table S1051. Gene #132: 'ESCO2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
ESCO2 MUTATED	3	4	1
ESCO2 WILD-TYPE	37	21	18

'ESCO2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.515 (Fisher's exact test), Q value = 1

Table S1052. Gene #132: 'ESCO2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
ESCO2 MUTATED	0	4	4
ESCO2 WILD-TYPE	1	27	48

'ESCO2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.718 (Fisher's exact test), Q value = 1

Table S1053. Gene #132: 'ESCO2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
ESCO2 MUTATED	3	3	1	1
ESCO2 WILD-TYPE	28	17	10	21

'ESCO2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.232 (Fisher's exact test), Q value = 1

Table S1054. Gene #132: 'ESCO2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
ESCO2 MUTATED	3	0	5
ESCO2 WILD-TYPE	34	16	26

'ESCO2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1055. Gene #132: 'ESCO2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
ESCO2 MUTATED	4	2	2
ESCO2 WILD-TYPE	34	18	24

'ESCO2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.565 (Fisher's exact test), Q value = 1

Table S1056. Gene #132: 'ESCO2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
ESCO2 MUTATED	4	1	3
ESCO2 WILD-TYPE	23	18	35

'CTRL MUTATION STATUS' versus 'CN_CNMF'

P value = 0.26 (Fisher's exact test), Q value = 1

Table S1057. Gene #133: 'CTRL MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
CTRL MUTATED	0	5	2
CTRL WILD-TYPE	24	40	19

'CTRL MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1058. Gene #133: 'CTRL MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
CTRL MUTATED	2	3	2
CTRL WILD-TYPE	29	32	22

'CTRL MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.678 (Fisher's exact test), Q value = 1

Table S1059. Gene #133: 'CTRL MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
CTRL MUTATED	4	1	2
CTRL WILD-TYPE	36	24	17

'CTRL MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0646 (Fisher's exact test), Q value = 1

Table S1060. Gene #133: 'CTRL MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
CTRL MUTATED	1	3	3
CTRL WILD-TYPE	0	28	49

'CTRL MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.39 (Fisher's exact test), Q value = 1

Table S1061. Gene #133: 'CTRL MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
CTRL MUTATED	1	2	2	2
CTRL WILD-TYPE	30	18	9	20

'CTRL MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.768 (Fisher's exact test), Q value = 1

Table S1062. Gene #133: 'CTRL MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
CTRL MUTATED	3	2	2
CTRL WILD-TYPE	34	14	29

'CTRL MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.885 (Fisher's exact test), Q value = 1

Table S1063. Gene #133: 'CTRL MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
CTRL MUTATED	4	1	2
CTRL WILD-TYPE	34	19	24

'CTRL MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1064. Gene #133: 'CTRL MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
CTRL MUTATED	2	2	3
CTRL WILD-TYPE	25	17	35

'OTUD4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.943 (Fisher's exact test), Q value = 1

Table S1065. Gene #134: 'OTUD4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
OTUD4 MUTATED	7	12	5
OTUD4 WILD-TYPE	17	33	16

'OTUD4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.414 (Fisher's exact test), Q value = 1

Table S1066. Gene #134: 'OTUD4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
OTUD4 MUTATED	11	8	5
OTUD4 WILD-TYPE	20	27	19

'OTUD4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0595 (Fisher's exact test), Q value = 1

Table S1067. Gene #134: 'OTUD4 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
OTUD4 MUTATED	13	3	8
OTUD4 WILD-TYPE	27	22	11

'OTUD4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.22 (Fisher's exact test), Q value = 1

Table S1068. Gene #134: 'OTUD4 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
OTUD4 MUTATED	1	10	13
OTUD4 WILD-TYPE	0	21	39

'OTUD4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.932 (Fisher's exact test), Q value = 1

Table S1069. Gene #134: 'OTUD4 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
OTUD4 MUTATED	9	5	4	6
OTUD4 WILD-TYPE	22	15	7	16

'OTUD4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.514 (Fisher's exact test), Q value = 1

Table S1070. Gene #134: 'OTUD4 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
OTUD4 MUTATED	11	6	7
OTUD4 WILD-TYPE	26	10	24

'OTUD4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.6 (Fisher's exact test), Q value = 1

Table S1071. Gene #134: 'OTUD4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
OTUD4 MUTATED	9	6	9
OTUD4 WILD-TYPE	29	14	17

'OTUD4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.35 (Fisher's exact test), Q value = 1

Table S1072. Gene #134: 'OTUD4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
OTUD4 MUTATED	5	7	12
OTUD4 WILD-TYPE	22	12	26

'QRICH1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.259 (Fisher's exact test), Q value = 1

Table S1073. Gene #135: 'QRICH1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
QRICH1 MUTATED	2	10	2
QRICH1 WILD-TYPE	22	35	19

'QRICH1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.338 (Fisher's exact test), Q value = 1

Table S1074. Gene #135: 'QRICH1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
QRICH1 MUTATED	3	8	4
QRICH1 WILD-TYPE	28	27	20

'QRICH1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.147 (Fisher's exact test), Q value = 1

Table S1075. Gene #135: 'QRICH1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
QRICH1 MUTATED	4	7	4
QRICH1 WILD-TYPE	36	18	15

'QRICH1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0823 (Fisher's exact test), Q value = 1

Table S1076. Gene #135: 'QRICH1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
QRICH1 MUTATED	1	7	7
QRICH1 WILD-TYPE	0	24	45

'QRICH1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.124 (Fisher's exact test), Q value = 1

Table S1077. Gene #135: 'QRICH1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
QRICH1 MUTATED	2	6	2	5
QRICH1 WILD-TYPE	29	14	9	17

'QRICH1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0213 (Fisher's exact test), Q value = 1

Table S1078. Gene #135: 'QRICH1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
QRICH1 MUTATED	2	4	9
QRICH1 WILD-TYPE	35	12	22

Figure S77. Get High-res Image Gene #135: 'QRICH1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'QRICH1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0118 (Fisher's exact test), Q value = 1

Table S1079. Gene #135: 'QRICH1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
QRICH1 MUTATED	3	8	4
QRICH1 WILD-TYPE	35	12	22

Figure S78. Get High-res Image Gene #135: 'QRICH1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

'QRICH1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0729 (Fisher's exact test), Q value = 1

Table S1080. Gene #135: 'QRICH1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
QRICH1 MUTATED	8	4	3
QRICH1 WILD-TYPE	19	15	35

'RAD17 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1081. Gene #136: 'RAD17 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
RAD17 MUTATED	1	2	1
RAD17 WILD-TYPE	23	43	20

'RAD17 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.369 (Fisher's exact test), Q value = 1

Table S1082. Gene #136: 'RAD17 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
RAD17 MUTATED	0	2	2
RAD17 WILD-TYPE	31	33	22

'RAD17 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.441 (Fisher's exact test), Q value = 1

Table S1083. Gene #136: 'RAD17 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
RAD17 MUTATED	3	0	1
RAD17 WILD-TYPE	37	25	18

'RAD17 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1084. Gene #136: 'RAD17 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
RAD17 MUTATED	0	1	3
RAD17 WILD-TYPE	1	30	49

'RAD17 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.238 (Fisher's exact test), Q value = 1

Table S1085. Gene #136: 'RAD17 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
RAD17 MUTATED	1	0	0	3
RAD17 WILD-TYPE	30	20	11	19

'RAD17 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.243 (Fisher's exact test), Q value = 1

Table S1086. Gene #136: 'RAD17 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
RAD17 MUTATED	3	1	0
RAD17 WILD-TYPE	34	15	31

'RAD17 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.683 (Fisher's exact test), Q value = 1

Table S1087. Gene #136: 'RAD17 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
RAD17 MUTATED	2	0	2
RAD17 WILD-TYPE	36	20	24

'RAD17 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.262 (Fisher's exact test), Q value = 1

Table S1088. Gene #136: 'RAD17 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
RAD17 MUTATED	0	2	2
RAD17 WILD-TYPE	27	17	36

'COTL1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0999 (Fisher's exact test), Q value = 1

Table S1089. Gene #137: 'COTL1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
COTL1 MUTATED	1	2	4
COTL1 WILD-TYPE	23	43	17

'COTL1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0726 (Fisher's exact test), Q value = 1

Table S1090. Gene #137: 'COTL1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
COTL1 MUTATED	2	1	5
COTL1 WILD-TYPE	29	34	19

'COTL1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0915 (Fisher's exact test), Q value = 1

Table S1091. Gene #137: 'COTL1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
COTL1 MUTATED	3	5	0
COTL1 WILD-TYPE	37	20	19

'COTL1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.027 (Fisher's exact test), Q value = 1

Table S1092. Gene #137: 'COTL1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
COTL1 MUTATED	1	1	6
COTL1 WILD-TYPE	0	30	46

Figure S79. Get High-res Image Gene #137: 'COTL1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'COTL1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0909 (Fisher's exact test), Q value = 1

Table S1093. Gene #137: 'COTL1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
COTL1 MUTATED	2	5	0	1
COTL1 WILD-TYPE	29	15	11	21

'COTL1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0152 (Fisher's exact test), Q value = 1

Table S1094. Gene #137: 'COTL1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
COTL1 MUTATED	1	0	7
COTL1 WILD-TYPE	36	16	24

Figure S80. Get High-res Image Gene #137: 'COTL1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'COTL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.451 (Fisher's exact test), Q value = 1

Table S1095. Gene #137: 'COTL1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
COTL1 MUTATED	4	3	1
COTL1 WILD-TYPE	34	17	25

'COTL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0245 (Fisher's exact test), Q value = 1

Table S1096. Gene #137: 'COTL1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
COTL1 MUTATED	6	1	1
COTL1 WILD-TYPE	21	18	37

Figure S81. Get High-res Image Gene #137: 'COTL1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

'CDH3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.534 (Fisher's exact test), Q value = 1

Table S1097. Gene #138: 'CDH3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
CDH3 MUTATED	1	5	3
CDH3 WILD-TYPE	23	40	18

'CDH3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.101 (Fisher's exact test), Q value = 1

Table S1098. Gene #138: 'CDH3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
CDH3 MUTATED	1	3	5
CDH3 WILD-TYPE	30	32	19

'CDH3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.235 (Fisher's exact test), Q value = 1

Table S1099. Gene #138: 'CDH3 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
CDH3 MUTATED	4	4	0
CDH3 WILD-TYPE	36	21	19

'CDH3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.11 (Fisher's exact test), Q value = 1

Table S1100. Gene #138: 'CDH3 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
CDH3 MUTATED	1	2	5
CDH3 WILD-TYPE	0	29	47

'CDH3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.378 (Fisher's exact test), Q value = 1

Table S1101. Gene #138: 'CDH3 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
CDH3 MUTATED	1	3	1	3
CDH3 WILD-TYPE	30	17	10	19

'CDH3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.232 (Fisher's exact test), Q value = 1

Table S1102. Gene #138: 'CDH3 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
CDH3 MUTATED	3	0	5
CDH3 WILD-TYPE	34	16	26

'CDH3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0367 (Fisher's exact test), Q value = 1

Table S1103. Gene #138: 'CDH3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
CDH3 MUTATED	2	5	1
CDH3 WILD-TYPE	36	15	25

Figure S82. Get High-res Image Gene #138: 'CDH3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

'CDH3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.124 (Fisher's exact test), Q value = 1

Table S1104. Gene #138: 'CDH3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
CDH3 MUTATED	5	0	3
CDH3 WILD-TYPE	22	19	35

'ECSIT MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1105. Gene #139: 'ECSIT MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
ECSIT MUTATED	2	3	1
ECSIT WILD-TYPE	22	42	20

'ECSIT MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1106. Gene #139: 'ECSIT MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
ECSIT MUTATED	2	2	2
ECSIT WILD-TYPE	29	33	22

'ECSIT MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00236 (Fisher's exact test), Q value = 1

Table S1107. Gene #139: 'ECSIT MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
ECSIT MUTATED	1	0	5
ECSIT WILD-TYPE	39	25	14

Figure S83. Get High-res Image Gene #139: 'ECSIT MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

'ECSIT MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.248 (Fisher's exact test), Q value = 1

Table S1108. Gene #139: 'ECSIT MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
ECSIT MUTATED	0	4	2
ECSIT WILD-TYPE	1	27	50

'ECSIT MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.385 (Fisher's exact test), Q value = 1

Table S1109. Gene #139: 'ECSIT MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
ECSIT MUTATED	1	1	2	2
ECSIT WILD-TYPE	30	19	9	20

'ECSIT MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.156 (Fisher's exact test), Q value = 1

Table S1110. Gene #139: 'ECSIT MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
ECSIT MUTATED	2	3	1
ECSIT WILD-TYPE	35	13	30

'ECSIT MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.16 (Fisher's exact test), Q value = 1

Table S1111. Gene #139: 'ECSIT MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
ECSIT MUTATED	1	1	4
ECSIT WILD-TYPE	37	19	22

'ECSIT MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.301 (Fisher's exact test), Q value = 1

Table S1112. Gene #139: 'ECSIT MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
ECSIT MUTATED	1	3	2
ECSIT WILD-TYPE	26	16	36

'PHF14 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.345 (Fisher's exact test), Q value = 1

Table S1113. Gene #140: 'PHF14 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
PHF14 MUTATED	2	5	0
PHF14 WILD-TYPE	22	40	21

'PHF14 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.694 (Fisher's exact test), Q value = 1

Table S1114. Gene #140: 'PHF14 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
PHF14 MUTATED	2	4	1
PHF14 WILD-TYPE	29	31	23

'PHF14 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.523 (Fisher's exact test), Q value = 1

Table S1115. Gene #140: 'PHF14 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
PHF14 MUTATED	2	3	2
PHF14 WILD-TYPE	38	22	17

'PHF14 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0249 (Fisher's exact test), Q value = 1

Table S1116. Gene #140: 'PHF14 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
PHF14 MUTATED	1	4	2
PHF14 WILD-TYPE	0	27	50

Figure S84. Get High-res Image Gene #140: 'PHF14 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'PHF14 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.445 (Fisher's exact test), Q value = 1

Table S1117. Gene #140: 'PHF14 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
PHF14 MUTATED	1	3	1	2
PHF14 WILD-TYPE	30	17	10	20

'PHF14 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.593 (Fisher's exact test), Q value = 1

Table S1118. Gene #140: 'PHF14 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
PHF14 MUTATED	2	1	4
PHF14 WILD-TYPE	35	15	27

'PHF14 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.202 (Fisher's exact test), Q value = 1

Table S1119. Gene #140: 'PHF14 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
PHF14 MUTATED	1	3	3
PHF14 WILD-TYPE	37	17	23

'PHF14 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.414 (Fisher's exact test), Q value = 1

Table S1120. Gene #140: 'PHF14 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
PHF14 MUTATED	4	1	2
PHF14 WILD-TYPE	23	18	36

'PHF13 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1121. Gene #141: 'PHF13 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
PHF13 MUTATED	4	7	3
PHF13 WILD-TYPE	20	38	18

'PHF13 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.479 (Fisher's exact test), Q value = 1

Table S1122. Gene #141: 'PHF13 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
PHF13 MUTATED	5	7	2
PHF13 WILD-TYPE	26	28	22

'PHF13 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.806 (Fisher's exact test), Q value = 1

Table S1123. Gene #141: 'PHF13 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
PHF13 MUTATED	8	3	3
PHF13 WILD-TYPE	32	22	16

'PHF13 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.66 (Fisher's exact test), Q value = 1

Table S1124. Gene #141: 'PHF13 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
PHF13 MUTATED	0	6	8
PHF13 WILD-TYPE	1	25	44

'PHF13 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.632 (Fisher's exact test), Q value = 1

Table S1125. Gene #141: 'PHF13 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
PHF13 MUTATED	5	2	3	4
PHF13 WILD-TYPE	26	18	8	18

'PHF13 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.395 (Fisher's exact test), Q value = 1

Table S1126. Gene #141: 'PHF13 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
PHF13 MUTATED	8	3	3
PHF13 WILD-TYPE	29	13	28

'PHF13 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1127. Gene #141: 'PHF13 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
PHF13 MUTATED	7	3	4
PHF13 WILD-TYPE	31	17	22

'PHF13 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.52 (Fisher's exact test), Q value = 1

Table S1128. Gene #141: 'PHF13 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
PHF13 MUTATED	3	3	8
PHF13 WILD-TYPE	24	16	30

'SLC6A9 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.674 (Fisher's exact test), Q value = 1

Table S1129. Gene #142: 'SLC6A9 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
SLC6A9 MUTATED	1	5	1
SLC6A9 WILD-TYPE	23	40	20

'SLC6A9 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0824 (Fisher's exact test), Q value = 1

Table S1130. Gene #142: 'SLC6A9 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
SLC6A9 MUTATED	2	6	0
SLC6A9 WILD-TYPE	29	29	24

'SLC6A9 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.801 (Fisher's exact test), Q value = 1

Table S1131. Gene #142: 'SLC6A9 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
SLC6A9 MUTATED	3	3	2
SLC6A9 WILD-TYPE	37	22	17

'SLC6A9 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.515 (Fisher's exact test), Q value = 1

Table S1132. Gene #142: 'SLC6A9 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
SLC6A9 MUTATED	0	4	4
SLC6A9 WILD-TYPE	1	27	48

'SLC6A9 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.294 (Fisher's exact test), Q value = 1

Table S1133. Gene #142: 'SLC6A9 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
SLC6A9 MUTATED	1	3	2	2
SLC6A9 WILD-TYPE	30	17	9	20

'SLC6A9 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.795 (Fisher's exact test), Q value = 1

Table S1134. Gene #142: 'SLC6A9 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
SLC6A9 MUTATED	3	1	4
SLC6A9 WILD-TYPE	34	15	27

'SLC6A9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1135. Gene #142: 'SLC6A9 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
SLC6A9 MUTATED	4	2	2
SLC6A9 WILD-TYPE	34	18	24

'SLC6A9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.565 (Fisher's exact test), Q value = 1

Table S1136. Gene #142: 'SLC6A9 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
SLC6A9 MUTATED	4	1	3
SLC6A9 WILD-TYPE	23	18	35

'STK19 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1137. Gene #143: 'STK19 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
STK19 MUTATED	1	3	1
STK19 WILD-TYPE	23	42	20

'STK19 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.733 (Fisher's exact test), Q value = 1

Table S1138. Gene #143: 'STK19 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
STK19 MUTATED	1	3	1
STK19 WILD-TYPE	30	32	23

'STK19 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.704 (Fisher's exact test), Q value = 1

Table S1139. Gene #143: 'STK19 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
STK19 MUTATED	2	1	2
STK19 WILD-TYPE	38	24	17

'STK19 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1140. Gene #143: 'STK19 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
STK19 MUTATED	0	2	3
STK19 WILD-TYPE	1	29	49

'STK19 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.31 (Fisher's exact test), Q value = 1

Table S1141. Gene #143: 'STK19 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
STK19 MUTATED	2	0	0	3
STK19 WILD-TYPE	29	20	11	19

'STK19 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.414 (Fisher's exact test), Q value = 1

Table S1142. Gene #143: 'STK19 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
STK19 MUTATED	2	2	1
STK19 WILD-TYPE	35	14	30

'STK19 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1143. Gene #143: 'STK19 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
STK19 MUTATED	2	1	2
STK19 WILD-TYPE	36	19	24

'STK19 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.708 (Fisher's exact test), Q value = 1

Table S1144. Gene #143: 'STK19 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
STK19 MUTATED	1	2	2
STK19 WILD-TYPE	26	17	36

'PANK2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.678 (Fisher's exact test), Q value = 1

Table S1145. Gene #144: 'PANK2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
PANK2 MUTATED	3	6	1
PANK2 WILD-TYPE	21	39	20

'PANK2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.586 (Fisher's exact test), Q value = 1

Table S1146. Gene #144: 'PANK2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
PANK2 MUTATED	2	5	3
PANK2 WILD-TYPE	29	30	21

'PANK2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1147. Gene #144: 'PANK2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
PANK2 MUTATED	5	3	2
PANK2 WILD-TYPE	35	22	17

'PANK2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0437 (Fisher's exact test), Q value = 1

Table S1148. Gene #144: 'PANK2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
PANK2 MUTATED	1	5	4
PANK2 WILD-TYPE	0	26	48

Figure S85. Get High-res Image Gene #144: 'PANK2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'PANK2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.407 (Fisher's exact test), Q value = 1

Table S1149. Gene #144: 'PANK2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
PANK2 MUTATED	3	2	3	2
PANK2 WILD-TYPE	28	18	8	20

'PANK2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1150. Gene #144: 'PANK2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
PANK2 MUTATED	4	2	4
PANK2 WILD-TYPE	33	14	27

'PANK2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.831 (Fisher's exact test), Q value = 1

Table S1151. Gene #144: 'PANK2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
PANK2 MUTATED	4	2	4
PANK2 WILD-TYPE	34	18	22

'PANK2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.909 (Fisher's exact test), Q value = 1

Table S1152. Gene #144: 'PANK2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
PANK2 MUTATED	4	2	4
PANK2 WILD-TYPE	23	17	34

'ST6GALNAC5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.143 (Fisher's exact test), Q value = 1

Table S1153. Gene #145: 'ST6GALNAC5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
ST6GALNAC5 MUTATED	4	11	1
ST6GALNAC5 WILD-TYPE	20	34	20

'ST6GALNAC5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.346 (Fisher's exact test), Q value = 1

Table S1154. Gene #145: 'ST6GALNAC5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
ST6GALNAC5 MUTATED	6	8	2
ST6GALNAC5 WILD-TYPE	25	27	22

'ST6GALNAC5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.583 (Fisher's exact test), Q value = 1

Table S1155. Gene #145: 'ST6GALNAC5 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
ST6GALNAC5 MUTATED	9	3	4
ST6GALNAC5 WILD-TYPE	31	22	15

'ST6GALNAC5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.26 (Fisher's exact test), Q value = 1

Table S1156. Gene #145: 'ST6GALNAC5 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
ST6GALNAC5 MUTATED	1	6	9
ST6GALNAC5 WILD-TYPE	0	25	43

'ST6GALNAC5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.482 (Fisher's exact test), Q value = 1

Table S1157. Gene #145: 'ST6GALNAC5 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
ST6GALNAC5 MUTATED	6	5	3	2
ST6GALNAC5 WILD-TYPE	25	15	8	20

'ST6GALNAC5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.88 (Fisher's exact test), Q value = 1

Table S1158. Gene #145: 'ST6GALNAC5 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
ST6GALNAC5 MUTATED	8	3	5
ST6GALNAC5 WILD-TYPE	29	13	26

'ST6GALNAC5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.71 (Fisher's exact test), Q value = 1

Table S1159. Gene #145: 'ST6GALNAC5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
ST6GALNAC5 MUTATED	7	5	4
ST6GALNAC5 WILD-TYPE	31	15	22

'ST6GALNAC5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1160. Gene #145: 'ST6GALNAC5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
ST6GALNAC5 MUTATED	5	4	7
ST6GALNAC5 WILD-TYPE	22	15	31

'PTPLAD2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.837 (Fisher's exact test), Q value = 1

Table S1161. Gene #146: 'PTPLAD2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
PTPLAD2 MUTATED	2	2	1
PTPLAD2 WILD-TYPE	22	43	20

'PTPLAD2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.622 (Fisher's exact test), Q value = 1

Table S1162. Gene #146: 'PTPLAD2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
PTPLAD2 MUTATED	2	1	2
PTPLAD2 WILD-TYPE	29	34	22

'PTPLAD2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.102 (Fisher's exact test), Q value = 1

Table S1163. Gene #146: 'PTPLAD2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
PTPLAD2 MUTATED	2	0	3
PTPLAD2 WILD-TYPE	38	25	16

'PTPLAD2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0428 (Fisher's exact test), Q value = 1

Table S1164. Gene #146: 'PTPLAD2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
PTPLAD2 MUTATED	1	2	2
PTPLAD2 WILD-TYPE	0	29	50

Figure S86. Get High-res Image Gene #146: 'PTPLAD2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'PTPLAD2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.679 (Fisher's exact test), Q value = 1

Table S1165. Gene #146: 'PTPLAD2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
PTPLAD2 MUTATED	1	2	1	1
PTPLAD2 WILD-TYPE	30	18	10	21

'PTPLAD2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1166. Gene #146: 'PTPLAD2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
PTPLAD2 MUTATED	2	1	2
PTPLAD2 WILD-TYPE	35	15	29

'PTPLAD2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.509 (Fisher's exact test), Q value = 1

Table S1167. Gene #146: 'PTPLAD2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
PTPLAD2 MUTATED	1	2	2
PTPLAD2 WILD-TYPE	37	18	24

'PTPLAD2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1168. Gene #146: 'PTPLAD2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
PTPLAD2 MUTATED	2	1	2
PTPLAD2 WILD-TYPE	25	18	36

'TNFSF9 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.775 (Fisher's exact test), Q value = 1

Table S1169. Gene #147: 'TNFSF9 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
TNFSF9 MUTATED	4	11	4
TNFSF9 WILD-TYPE	20	34	17

'TNFSF9 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.855 (Fisher's exact test), Q value = 1

Table S1170. Gene #147: 'TNFSF9 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
TNFSF9 MUTATED	7	8	4
TNFSF9 WILD-TYPE	24	27	20

'TNFSF9 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.641 (Fisher's exact test), Q value = 1

Table S1171. Gene #147: 'TNFSF9 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
TNFSF9 MUTATED	9	7	3
TNFSF9 WILD-TYPE	31	18	16

'TNFSF9 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.315 (Fisher's exact test), Q value = 1

Table S1172. Gene #147: 'TNFSF9 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
TNFSF9 MUTATED	1	7	11
TNFSF9 WILD-TYPE	0	24	41

'TNFSF9 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.919 (Fisher's exact test), Q value = 1

Table S1173. Gene #147: 'TNFSF9 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
TNFSF9 MUTATED	6	5	3	5
TNFSF9 WILD-TYPE	25	15	8	17

'TNFSF9 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.442 (Fisher's exact test), Q value = 1

Table S1174. Gene #147: 'TNFSF9 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
TNFSF9 MUTATED	8	2	9
TNFSF9 WILD-TYPE	29	14	22

'TNFSF9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.47 (Fisher's exact test), Q value = 1

Table S1175. Gene #147: 'TNFSF9 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
TNFSF9 MUTATED	9	6	4
TNFSF9 WILD-TYPE	29	14	22

'TNFSF9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.313 (Fisher's exact test), Q value = 1

Table S1176. Gene #147: 'TNFSF9 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
TNFSF9 MUTATED	8	2	9
TNFSF9 WILD-TYPE	19	17	29

'OTOF MUTATION STATUS' versus 'CN_CNMF'

P value = 0.216 (Fisher's exact test), Q value = 1

Table S1177. Gene #148: 'OTOF MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
OTOF MUTATED	3	13	3
OTOF WILD-TYPE	21	32	18

'OTOF MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.677 (Fisher's exact test), Q value = 1

Table S1178. Gene #148: 'OTOF MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
OTOF MUTATED	6	9	4
OTOF WILD-TYPE	25	26	20

'OTOF MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1179. Gene #148: 'OTOF MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
OTOF MUTATED	9	5	4
OTOF WILD-TYPE	31	20	15

'OTOF MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.219 (Fisher's exact test), Q value = 1

Table S1180. Gene #148: 'OTOF MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
OTOF MUTATED	1	7	10
OTOF WILD-TYPE	0	24	42

'OTOF MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.946 (Fisher's exact test), Q value = 1

Table S1181. Gene #148: 'OTOF MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
OTOF MUTATED	6	4	3	5
OTOF WILD-TYPE	25	16	8	17

'OTOF MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.903 (Fisher's exact test), Q value = 1

Table S1182. Gene #148: 'OTOF MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
OTOF MUTATED	8	4	6
OTOF WILD-TYPE	29	12	25

'OTOF MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0864 (Fisher's exact test), Q value = 1

Table S1183. Gene #148: 'OTOF MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
OTOF MUTATED	9	1	8
OTOF WILD-TYPE	29	19	18

'OTOF MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.722 (Fisher's exact test), Q value = 1

Table S1184. Gene #148: 'OTOF MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
OTOF MUTATED	6	5	7
OTOF WILD-TYPE	21	14	31

'ABCC2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.929 (Fisher's exact test), Q value = 1

Table S1185. Gene #149: 'ABCC2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
ABCC2 MUTATED	3	8	3
ABCC2 WILD-TYPE	21	37	18

'ABCC2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.474 (Fisher's exact test), Q value = 1

Table S1186. Gene #149: 'ABCC2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
ABCC2 MUTATED	3	6	5
ABCC2 WILD-TYPE	28	29	19

'ABCC2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.738 (Fisher's exact test), Q value = 1

Table S1187. Gene #149: 'ABCC2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
ABCC2 MUTATED	6	3	4
ABCC2 WILD-TYPE	34	22	15

'ABCC2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0759 (Fisher's exact test), Q value = 1

Table S1188. Gene #149: 'ABCC2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
ABCC2 MUTATED	1	6	6
ABCC2 WILD-TYPE	0	25	46

'ABCC2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.278 (Fisher's exact test), Q value = 1

Table S1189. Gene #149: 'ABCC2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
ABCC2 MUTATED	5	4	3	1
ABCC2 WILD-TYPE	26	16	8	21

'ABCC2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.875 (Fisher's exact test), Q value = 1

Table S1190. Gene #149: 'ABCC2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
ABCC2 MUTATED	5	3	5
ABCC2 WILD-TYPE	32	13	26

'ABCC2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.468 (Fisher's exact test), Q value = 1

Table S1191. Gene #149: 'ABCC2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
ABCC2 MUTATED	5	5	3
ABCC2 WILD-TYPE	33	15	23

'ABCC2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.925 (Fisher's exact test), Q value = 1

Table S1192. Gene #149: 'ABCC2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
ABCC2 MUTATED	5	3	5
ABCC2 WILD-TYPE	22	16	33

'MST1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.87 (Fisher's exact test), Q value = 1

Table S1193. Gene #150: 'MST1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
MST1 MUTATED	3	8	4
MST1 WILD-TYPE	21	37	17

'MST1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.509 (Fisher's exact test), Q value = 1

Table S1194. Gene #150: 'MST1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
MST1 MUTATED	4	5	6
MST1 WILD-TYPE	27	30	18

'MST1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.147 (Fisher's exact test), Q value = 1

Table S1195. Gene #150: 'MST1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
MST1 MUTATED	7	7	1
MST1 WILD-TYPE	33	18	18

'MST1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0587 (Fisher's exact test), Q value = 1

Table S1196. Gene #150: 'MST1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
MST1 MUTATED	1	3	11
MST1 WILD-TYPE	0	28	41

'MST1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0192 (Fisher's exact test), Q value = 1

Table S1197. Gene #150: 'MST1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
MST1 MUTATED	3	8	0	4
MST1 WILD-TYPE	28	12	11	18

Figure S87. Get High-res Image Gene #150: 'MST1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

'MST1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0383 (Fisher's exact test), Q value = 1

Table S1198. Gene #150: 'MST1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
MST1 MUTATED	4	1	10
MST1 WILD-TYPE	33	15	21

Figure S88. Get High-res Image Gene #150: 'MST1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'MST1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.082 (Fisher's exact test), Q value = 1

Table S1199. Gene #150: 'MST1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
MST1 MUTATED	4	7	4
MST1 WILD-TYPE	34	13	22

'MST1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.056 (Fisher's exact test), Q value = 1

Table S1200. Gene #150: 'MST1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
MST1 MUTATED	9	2	4
MST1 WILD-TYPE	18	17	34

'SCD MUTATION STATUS' versus 'CN_CNMF'

P value = 0.659 (Fisher's exact test), Q value = 1

Table S1201. Gene #151: 'SCD MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
SCD MUTATED	2	6	1
SCD WILD-TYPE	22	39	20

'SCD MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.237 (Fisher's exact test), Q value = 1

Table S1202. Gene #151: 'SCD MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
SCD MUTATED	1	4	4
SCD WILD-TYPE	30	31	20

'SCD MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0081 (Fisher's exact test), Q value = 1

Table S1203. Gene #151: 'SCD MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
SCD MUTATED	2	1	6
SCD WILD-TYPE	38	24	13

Figure S89. Get High-res Image Gene #151: 'SCD MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

'SCD MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0359 (Fisher's exact test), Q value = 1

Table S1204. Gene #151: 'SCD MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
SCD MUTATED	1	5	3
SCD WILD-TYPE	0	26	49

Figure S90. Get High-res Image Gene #151: 'SCD MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'SCD MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.12 (Fisher's exact test), Q value = 1

Table S1205. Gene #151: 'SCD MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
SCD MUTATED	1	3	3	2
SCD WILD-TYPE	30	17	8	20

'SCD MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.525 (Fisher's exact test), Q value = 1

Table S1206. Gene #151: 'SCD MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
SCD MUTATED	3	3	3
SCD WILD-TYPE	34	13	28

'SCD MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0622 (Fisher's exact test), Q value = 1

Table S1207. Gene #151: 'SCD MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
SCD MUTATED	1	3	5
SCD WILD-TYPE	37	17	21

'SCD MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.538 (Fisher's exact test), Q value = 1

Table S1208. Gene #151: 'SCD MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
SCD MUTATED	3	3	3
SCD WILD-TYPE	24	16	35

'FOXJ2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.466 (Fisher's exact test), Q value = 1

Table S1209. Gene #152: 'FOXJ2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
FOXJ2 MUTATED	1	6	3
FOXJ2 WILD-TYPE	23	39	18

'FOXJ2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.555 (Fisher's exact test), Q value = 1

Table S1210. Gene #152: 'FOXJ2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
FOXJ2 MUTATED	3	6	2
FOXJ2 WILD-TYPE	28	29	22

'FOXJ2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.919 (Fisher's exact test), Q value = 1

Table S1211. Gene #152: 'FOXJ2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
FOXJ2 MUTATED	5	3	3
FOXJ2 WILD-TYPE	35	22	16

'FOXJ2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0357 (Fisher's exact test), Q value = 1

Table S1212. Gene #152: 'FOXJ2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
FOXJ2 MUTATED	1	6	4
FOXJ2 WILD-TYPE	0	25	48

Figure S91. Get High-res Image Gene #152: 'FOXJ2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'FOXJ2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.207 (Fisher's exact test), Q value = 1

Table S1213. Gene #152: 'FOXJ2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
FOXJ2 MUTATED	3	5	2	1
FOXJ2 WILD-TYPE	28	15	9	21

'FOXJ2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.911 (Fisher's exact test), Q value = 1

Table S1214. Gene #152: 'FOXJ2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
FOXJ2 MUTATED	4	2	5
FOXJ2 WILD-TYPE	33	14	26

'FOXJ2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.202 (Fisher's exact test), Q value = 1

Table S1215. Gene #152: 'FOXJ2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
FOXJ2 MUTATED	3	5	3
FOXJ2 WILD-TYPE	35	15	23

'FOXJ2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.344 (Fisher's exact test), Q value = 1

Table S1216. Gene #152: 'FOXJ2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
FOXJ2 MUTATED	5	3	3
FOXJ2 WILD-TYPE	22	16	35

'CCDC28B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.767 (Fisher's exact test), Q value = 1

Table S1217. Gene #153: 'CCDC28B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
CCDC28B MUTATED	3	9	4
CCDC28B WILD-TYPE	21	36	17

'CCDC28B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.591 (Fisher's exact test), Q value = 1

Table S1218. Gene #153: 'CCDC28B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
CCDC28B MUTATED	4	8	4
CCDC28B WILD-TYPE	27	27	20

'CCDC28B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.329 (Fisher's exact test), Q value = 1

Table S1219. Gene #153: 'CCDC28B MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
CCDC28B MUTATED	6	4	6
CCDC28B WILD-TYPE	34	21	13

'CCDC28B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.614 (Fisher's exact test), Q value = 1

Table S1220. Gene #153: 'CCDC28B MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
CCDC28B MUTATED	0	7	9
CCDC28B WILD-TYPE	1	24	43

'CCDC28B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.496 (Fisher's exact test), Q value = 1

Table S1221. Gene #153: 'CCDC28B MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
CCDC28B MUTATED	5	3	4	4
CCDC28B WILD-TYPE	26	17	7	18

'CCDC28B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.438 (Fisher's exact test), Q value = 1

Table S1222. Gene #153: 'CCDC28B MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
CCDC28B MUTATED	6	5	5
CCDC28B WILD-TYPE	31	11	26

'CCDC28B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.79 (Fisher's exact test), Q value = 1

Table S1223. Gene #153: 'CCDC28B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
CCDC28B MUTATED	7	3	6
CCDC28B WILD-TYPE	31	17	20

'CCDC28B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.675 (Fisher's exact test), Q value = 1

Table S1224. Gene #153: 'CCDC28B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
CCDC28B MUTATED	5	5	6
CCDC28B WILD-TYPE	22	14	32

'AJAP1 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1225. Gene #154: 'AJAP1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
AJAP1 MUTATED	4	7	3
AJAP1 WILD-TYPE	20	38	18

'AJAP1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.628 (Fisher's exact test), Q value = 1

Table S1226. Gene #154: 'AJAP1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
AJAP1 MUTATED	5	4	5
AJAP1 WILD-TYPE	26	31	19

'AJAP1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.413 (Fisher's exact test), Q value = 1

Table S1227. Gene #154: 'AJAP1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
AJAP1 MUTATED	5	4	5
AJAP1 WILD-TYPE	35	21	14

'AJAP1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.134 (Fisher's exact test), Q value = 1

Table S1228. Gene #154: 'AJAP1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
AJAP1 MUTATED	1	6	7
AJAP1 WILD-TYPE	0	25	45

'AJAP1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.71 (Fisher's exact test), Q value = 1

Table S1229. Gene #154: 'AJAP1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
AJAP1 MUTATED	4	3	3	4
AJAP1 WILD-TYPE	27	17	8	18

'AJAP1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1230. Gene #154: 'AJAP1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
AJAP1 MUTATED	6	3	5
AJAP1 WILD-TYPE	31	13	26

'AJAP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.337 (Fisher's exact test), Q value = 1

Table S1231. Gene #154: 'AJAP1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
AJAP1 MUTATED	4	5	5
AJAP1 WILD-TYPE	34	15	21

'AJAP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1232. Gene #154: 'AJAP1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
AJAP1 MUTATED	5	3	6
AJAP1 WILD-TYPE	22	16	32

'CXXC4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.783 (Fisher's exact test), Q value = 1

Table S1233. Gene #155: 'CXXC4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
CXXC4 MUTATED	4	5	3
CXXC4 WILD-TYPE	20	40	18

'CXXC4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.585 (Fisher's exact test), Q value = 1

Table S1234. Gene #155: 'CXXC4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
CXXC4 MUTATED	4	4	5
CXXC4 WILD-TYPE	27	31	19

'CXXC4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.199 (Fisher's exact test), Q value = 1

Table S1235. Gene #155: 'CXXC4 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
CXXC4 MUTATED	9	3	1
CXXC4 WILD-TYPE	31	22	18

'CXXC4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.102 (Fisher's exact test), Q value = 1

Table S1236. Gene #155: 'CXXC4 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
CXXC4 MUTATED	1	3	9
CXXC4 WILD-TYPE	0	28	43

'CXXC4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.563 (Fisher's exact test), Q value = 1

Table S1237. Gene #155: 'CXXC4 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
CXXC4 MUTATED	7	2	2	2
CXXC4 WILD-TYPE	24	18	9	20

'CXXC4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.661 (Fisher's exact test), Q value = 1

Table S1238. Gene #155: 'CXXC4 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
CXXC4 MUTATED	7	1	5
CXXC4 WILD-TYPE	30	15	26

'CXXC4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.372 (Fisher's exact test), Q value = 1

Table S1239. Gene #155: 'CXXC4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
CXXC4 MUTATED	8	3	2
CXXC4 WILD-TYPE	30	17	24

'CXXC4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.174 (Fisher's exact test), Q value = 1

Table S1240. Gene #155: 'CXXC4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
CXXC4 MUTATED	3	1	9
CXXC4 WILD-TYPE	24	18	29

'NAPSA MUTATION STATUS' versus 'CN_CNMF'

P value = 0.158 (Fisher's exact test), Q value = 1

Table S1241. Gene #156: 'NAPSA MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
NAPSA MUTATED	2	7	0
NAPSA WILD-TYPE	22	38	21

'NAPSA MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.409 (Fisher's exact test), Q value = 1

Table S1242. Gene #156: 'NAPSA MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
NAPSA MUTATED	3	2	4
NAPSA WILD-TYPE	28	33	20

'NAPSA MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1243. Gene #156: 'NAPSA MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
NAPSA MUTATED	4	2	2
NAPSA WILD-TYPE	36	23	17

'NAPSA MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.138 (Fisher's exact test), Q value = 1

Table S1244. Gene #156: 'NAPSA MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
NAPSA MUTATED	1	3	4
NAPSA WILD-TYPE	0	28	48

'NAPSA MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.407 (Fisher's exact test), Q value = 1

Table S1245. Gene #156: 'NAPSA MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
NAPSA MUTATED	2	2	0	4
NAPSA WILD-TYPE	29	18	11	18

'NAPSA MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.891 (Fisher's exact test), Q value = 1

Table S1246. Gene #156: 'NAPSA MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
NAPSA MUTATED	3	2	3
NAPSA WILD-TYPE	34	14	28

'NAPSA MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.637 (Fisher's exact test), Q value = 1

Table S1247. Gene #156: 'NAPSA MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
NAPSA MUTATED	3	3	2
NAPSA WILD-TYPE	35	17	24

'NAPSA MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.898 (Fisher's exact test), Q value = 1

Table S1248. Gene #156: 'NAPSA MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
NAPSA MUTATED	3	2	3
NAPSA WILD-TYPE	24	17	35

'SMAD4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.122 (Fisher's exact test), Q value = 1

Table S1249. Gene #157: 'SMAD4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
SMAD4 MUTATED	8	6	3
SMAD4 WILD-TYPE	16	39	18

'SMAD4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0246 (Fisher's exact test), Q value = 1

Table S1250. Gene #157: 'SMAD4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
SMAD4 MUTATED	9	2	6
SMAD4 WILD-TYPE	22	33	18

Figure S92. Get High-res Image Gene #157: 'SMAD4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'SMAD4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0258 (Fisher's exact test), Q value = 1

Table S1251. Gene #157: 'SMAD4 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
SMAD4 MUTATED	11	5	0
SMAD4 WILD-TYPE	29	20	19

Figure S93. Get High-res Image Gene #157: 'SMAD4 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

'SMAD4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00178 (Fisher's exact test), Q value = 1

Table S1252. Gene #157: 'SMAD4 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
SMAD4 MUTATED	1	1	14
SMAD4 WILD-TYPE	0	30	38

Figure S94. Get High-res Image Gene #157: 'SMAD4 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'SMAD4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0613 (Fisher's exact test), Q value = 1

Table S1253. Gene #157: 'SMAD4 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
SMAD4 MUTATED	10	4	0	2
SMAD4 WILD-TYPE	21	16	11	20

'SMAD4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0632 (Fisher's exact test), Q value = 1

Table S1254. Gene #157: 'SMAD4 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
SMAD4 MUTATED	8	0	8
SMAD4 WILD-TYPE	29	16	23

'SMAD4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00323 (Fisher's exact test), Q value = 1

Table S1255. Gene #157: 'SMAD4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
SMAD4 MUTATED	10	6	0
SMAD4 WILD-TYPE	28	14	26

Figure S95. Get High-res Image Gene #157: 'SMAD4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

'SMAD4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0322 (Fisher's exact test), Q value = 1

Table S1256. Gene #157: 'SMAD4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
SMAD4 MUTATED	6	0	10
SMAD4 WILD-TYPE	21	19	28

Figure S96. Get High-res Image Gene #157: 'SMAD4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

'DDX55 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.465 (Fisher's exact test), Q value = 1

Table S1257. Gene #158: 'DDX55 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
DDX55 MUTATED	4	12	3
DDX55 WILD-TYPE	20	33	18

'DDX55 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.663 (Fisher's exact test), Q value = 1

Table S1258. Gene #158: 'DDX55 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
DDX55 MUTATED	5	8	6
DDX55 WILD-TYPE	26	27	18

'DDX55 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0632 (Fisher's exact test), Q value = 1

Table S1259. Gene #158: 'DDX55 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
DDX55 MUTATED	8	3	8
DDX55 WILD-TYPE	32	22	11

'DDX55 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0819 (Fisher's exact test), Q value = 1

Table S1260. Gene #158: 'DDX55 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
DDX55 MUTATED	1	9	9
DDX55 WILD-TYPE	0	22	43

'DDX55 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.135 (Fisher's exact test), Q value = 1

Table S1261. Gene #158: 'DDX55 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
DDX55 MUTATED	7	5	5	2
DDX55 WILD-TYPE	24	15	6	20

'DDX55 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.684 (Fisher's exact test), Q value = 1

Table S1262. Gene #158: 'DDX55 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
DDX55 MUTATED	8	5	6
DDX55 WILD-TYPE	29	11	25

'DDX55 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.801 (Fisher's exact test), Q value = 1

Table S1263. Gene #158: 'DDX55 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
DDX55 MUTATED	8	4	7
DDX55 WILD-TYPE	30	16	19

'DDX55 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.905 (Fisher's exact test), Q value = 1

Table S1264. Gene #158: 'DDX55 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
DDX55 MUTATED	6	5	8
DDX55 WILD-TYPE	21	14	30

'TMEM41A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.889 (Fisher's exact test), Q value = 1

Table S1265. Gene #159: 'TMEM41A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
TMEM41A MUTATED	2	5	1
TMEM41A WILD-TYPE	22	40	20

'TMEM41A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.367 (Fisher's exact test), Q value = 1

Table S1266. Gene #159: 'TMEM41A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
TMEM41A MUTATED	2	2	4
TMEM41A WILD-TYPE	29	33	20

'TMEM41A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.441 (Fisher's exact test), Q value = 1

Table S1267. Gene #159: 'TMEM41A MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
TMEM41A MUTATED	4	1	3
TMEM41A WILD-TYPE	36	24	16

'TMEM41A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0429 (Fisher's exact test), Q value = 1

Table S1268. Gene #159: 'TMEM41A MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
TMEM41A MUTATED	1	4	3
TMEM41A WILD-TYPE	0	27	49

Figure S97. Get High-res Image Gene #159: 'TMEM41A MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'TMEM41A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1269. Gene #159: 'TMEM41A MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
TMEM41A MUTATED	3	2	1	2
TMEM41A WILD-TYPE	28	18	10	20

'TMEM41A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.441 (Fisher's exact test), Q value = 1

Table S1270. Gene #159: 'TMEM41A MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
TMEM41A MUTATED	3	3	2
TMEM41A WILD-TYPE	34	13	29

'TMEM41A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.895 (Fisher's exact test), Q value = 1

Table S1271. Gene #159: 'TMEM41A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
TMEM41A MUTATED	3	2	3
TMEM41A WILD-TYPE	35	18	23

'TMEM41A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.631 (Fisher's exact test), Q value = 1

Table S1272. Gene #159: 'TMEM41A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
TMEM41A MUTATED	2	3	3
TMEM41A WILD-TYPE	25	16	35

'CYP20A1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0445 (Fisher's exact test), Q value = 1

Table S1273. Gene #160: 'CYP20A1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
CYP20A1 MUTATED	1	8	0
CYP20A1 WILD-TYPE	23	37	21

Figure S98. Get High-res Image Gene #160: 'CYP20A1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'CYP20A1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.292 (Fisher's exact test), Q value = 1

Table S1274. Gene #160: 'CYP20A1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
CYP20A1 MUTATED	1	5	3
CYP20A1 WILD-TYPE	30	30	21

'CYP20A1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.251 (Fisher's exact test), Q value = 1

Table S1275. Gene #160: 'CYP20A1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
CYP20A1 MUTATED	4	1	4
CYP20A1 WILD-TYPE	36	24	15

'CYP20A1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0703 (Fisher's exact test), Q value = 1

Table S1276. Gene #160: 'CYP20A1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
CYP20A1 MUTATED	1	4	4
CYP20A1 WILD-TYPE	0	27	48

'CYP20A1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.542 (Fisher's exact test), Q value = 1

Table S1277. Gene #160: 'CYP20A1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
CYP20A1 MUTATED	2	2	1	4
CYP20A1 WILD-TYPE	29	18	10	18

'CYP20A1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.304 (Fisher's exact test), Q value = 1

Table S1278. Gene #160: 'CYP20A1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
CYP20A1 MUTATED	2	3	4
CYP20A1 WILD-TYPE	35	13	27

'CYP20A1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.316 (Fisher's exact test), Q value = 1

Table S1279. Gene #160: 'CYP20A1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
CYP20A1 MUTATED	2	3	4
CYP20A1 WILD-TYPE	36	17	22

'CYP20A1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.182 (Fisher's exact test), Q value = 1

Table S1280. Gene #160: 'CYP20A1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
CYP20A1 MUTATED	3	4	2
CYP20A1 WILD-TYPE	24	15	36

'SLC34A2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.748 (Fisher's exact test), Q value = 1

Table S1281. Gene #161: 'SLC34A2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
SLC34A2 MUTATED	3	4	3
SLC34A2 WILD-TYPE	21	41	18

'SLC34A2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.837 (Fisher's exact test), Q value = 1

Table S1282. Gene #161: 'SLC34A2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
SLC34A2 MUTATED	4	3	3
SLC34A2 WILD-TYPE	27	32	21

'SLC34A2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.136 (Fisher's exact test), Q value = 1

Table S1283. Gene #161: 'SLC34A2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
SLC34A2 MUTATED	8	1	1
SLC34A2 WILD-TYPE	32	24	18

'SLC34A2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0872 (Fisher's exact test), Q value = 1

Table S1284. Gene #161: 'SLC34A2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
SLC34A2 MUTATED	1	2	7
SLC34A2 WILD-TYPE	0	29	45

'SLC34A2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.899 (Fisher's exact test), Q value = 1

Table S1285. Gene #161: 'SLC34A2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
SLC34A2 MUTATED	5	2	1	2
SLC34A2 WILD-TYPE	26	18	10	20

'SLC34A2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.145 (Fisher's exact test), Q value = 1

Table S1286. Gene #161: 'SLC34A2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
SLC34A2 MUTATED	7	0	3
SLC34A2 WILD-TYPE	30	16	28

'SLC34A2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.314 (Fisher's exact test), Q value = 1

Table S1287. Gene #161: 'SLC34A2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
SLC34A2 MUTATED	7	1	2
SLC34A2 WILD-TYPE	31	19	24

'SLC34A2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.125 (Fisher's exact test), Q value = 1

Table S1288. Gene #161: 'SLC34A2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
SLC34A2 MUTATED	3	0	7
SLC34A2 WILD-TYPE	24	19	31

'ZNF207 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.186 (Fisher's exact test), Q value = 1

Table S1289. Gene #162: 'ZNF207 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
ZNF207 MUTATED	0	6	2
ZNF207 WILD-TYPE	24	39	19

'ZNF207 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.329 (Fisher's exact test), Q value = 1

Table S1290. Gene #162: 'ZNF207 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
ZNF207 MUTATED	1	5	2
ZNF207 WILD-TYPE	30	30	22

'ZNF207 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.626 (Fisher's exact test), Q value = 1

Table S1291. Gene #162: 'ZNF207 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
ZNF207 MUTATED	3	2	3
ZNF207 WILD-TYPE	37	23	16

'ZNF207 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0125 (Fisher's exact test), Q value = 1

Table S1292. Gene #162: 'ZNF207 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
ZNF207 MUTATED	1	5	2
ZNF207 WILD-TYPE	0	26	50

Figure S99. Get High-res Image Gene #162: 'ZNF207 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'ZNF207 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.294 (Fisher's exact test), Q value = 1

Table S1293. Gene #162: 'ZNF207 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
ZNF207 MUTATED	1	3	2	2
ZNF207 WILD-TYPE	30	17	9	20

'ZNF207 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.308 (Fisher's exact test), Q value = 1

Table S1294. Gene #162: 'ZNF207 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
ZNF207 MUTATED	2	3	3
ZNF207 WILD-TYPE	35	13	28

'ZNF207 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.4 (Fisher's exact test), Q value = 1

Table S1295. Gene #162: 'ZNF207 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
ZNF207 MUTATED	2	3	3
ZNF207 WILD-TYPE	36	17	23

'ZNF207 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.399 (Fisher's exact test), Q value = 1

Table S1296. Gene #162: 'ZNF207 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
ZNF207 MUTATED	3	3	2
ZNF207 WILD-TYPE	24	16	36

'SLITRK5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.538 (Fisher's exact test), Q value = 1

Table S1297. Gene #163: 'SLITRK5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
SLITRK5 MUTATED	3	7	1
SLITRK5 WILD-TYPE	21	38	20

'SLITRK5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.134 (Fisher's exact test), Q value = 1

Table S1298. Gene #163: 'SLITRK5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
SLITRK5 MUTATED	1	5	5
SLITRK5 WILD-TYPE	30	30	19

'SLITRK5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.497 (Fisher's exact test), Q value = 1

Table S1299. Gene #163: 'SLITRK5 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
SLITRK5 MUTATED	4	3	4
SLITRK5 WILD-TYPE	36	22	15

'SLITRK5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0783 (Fisher's exact test), Q value = 1

Table S1300. Gene #163: 'SLITRK5 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
SLITRK5 MUTATED	1	5	5
SLITRK5 WILD-TYPE	0	26	47

'SLITRK5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.745 (Fisher's exact test), Q value = 1

Table S1301. Gene #163: 'SLITRK5 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
SLITRK5 MUTATED	3	4	1	3
SLITRK5 WILD-TYPE	28	16	10	19

'SLITRK5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.645 (Fisher's exact test), Q value = 1

Table S1302. Gene #163: 'SLITRK5 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
SLITRK5 MUTATED	4	3	4
SLITRK5 WILD-TYPE	33	13	27

'SLITRK5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.313 (Fisher's exact test), Q value = 1

Table S1303. Gene #163: 'SLITRK5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
SLITRK5 MUTATED	3	4	4
SLITRK5 WILD-TYPE	35	16	22

'SLITRK5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.768 (Fisher's exact test), Q value = 1

Table S1304. Gene #163: 'SLITRK5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
SLITRK5 MUTATED	4	3	4
SLITRK5 WILD-TYPE	23	16	34

'MMRN1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.511 (Fisher's exact test), Q value = 1

Table S1305. Gene #164: 'MMRN1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
MMRN1 MUTATED	5	5	2
MMRN1 WILD-TYPE	19	40	19

'MMRN1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.495 (Fisher's exact test), Q value = 1

Table S1306. Gene #164: 'MMRN1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
MMRN1 MUTATED	3	4	5
MMRN1 WILD-TYPE	28	31	19

'MMRN1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.84 (Fisher's exact test), Q value = 1

Table S1307. Gene #164: 'MMRN1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
MMRN1 MUTATED	5	4	2
MMRN1 WILD-TYPE	35	21	17

'MMRN1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.137 (Fisher's exact test), Q value = 1

Table S1308. Gene #164: 'MMRN1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
MMRN1 MUTATED	1	3	7
MMRN1 WILD-TYPE	0	28	45

'MMRN1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1309. Gene #164: 'MMRN1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
MMRN1 MUTATED	4	3	1	3
MMRN1 WILD-TYPE	27	17	10	19

'MMRN1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.771 (Fisher's exact test), Q value = 1

Table S1310. Gene #164: 'MMRN1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
MMRN1 MUTATED	5	1	5
MMRN1 WILD-TYPE	32	15	26

'MMRN1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.503 (Fisher's exact test), Q value = 1

Table S1311. Gene #164: 'MMRN1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
MMRN1 MUTATED	5	4	2
MMRN1 WILD-TYPE	33	16	24

'MMRN1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.595 (Fisher's exact test), Q value = 1

Table S1312. Gene #164: 'MMRN1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
MMRN1 MUTATED	4	1	6
MMRN1 WILD-TYPE	23	18	32

'MAP7D3 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1313. Gene #165: 'MAP7D3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
MAP7D3 MUTATED	3	6	2
MAP7D3 WILD-TYPE	21	39	19

'MAP7D3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.92 (Fisher's exact test), Q value = 1

Table S1314. Gene #165: 'MAP7D3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
MAP7D3 MUTATED	3	5	3
MAP7D3 WILD-TYPE	28	30	21

'MAP7D3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.231 (Fisher's exact test), Q value = 1

Table S1315. Gene #165: 'MAP7D3 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
MAP7D3 MUTATED	6	1	4
MAP7D3 WILD-TYPE	34	24	15

'MAP7D3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0783 (Fisher's exact test), Q value = 1

Table S1316. Gene #165: 'MAP7D3 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
MAP7D3 MUTATED	1	5	5
MAP7D3 WILD-TYPE	0	26	47

'MAP7D3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.745 (Fisher's exact test), Q value = 1

Table S1317. Gene #165: 'MAP7D3 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
MAP7D3 MUTATED	3	4	1	3
MAP7D3 WILD-TYPE	28	16	10	19

'MAP7D3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.645 (Fisher's exact test), Q value = 1

Table S1318. Gene #165: 'MAP7D3 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
MAP7D3 MUTATED	4	3	4
MAP7D3 WILD-TYPE	33	13	27

'MAP7D3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.313 (Fisher's exact test), Q value = 1

Table S1319. Gene #165: 'MAP7D3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
MAP7D3 MUTATED	3	4	4
MAP7D3 WILD-TYPE	35	16	22

'MAP7D3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.768 (Fisher's exact test), Q value = 1

Table S1320. Gene #165: 'MAP7D3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
MAP7D3 MUTATED	4	3	4
MAP7D3 WILD-TYPE	23	16	34

'BTNL8 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.538 (Fisher's exact test), Q value = 1

Table S1321. Gene #166: 'BTNL8 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
BTNL8 MUTATED	3	7	1
BTNL8 WILD-TYPE	21	38	20

'BTNL8 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.555 (Fisher's exact test), Q value = 1

Table S1322. Gene #166: 'BTNL8 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
BTNL8 MUTATED	3	6	2
BTNL8 WILD-TYPE	28	29	22

'BTNL8 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.84 (Fisher's exact test), Q value = 1

Table S1323. Gene #166: 'BTNL8 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
BTNL8 MUTATED	5	4	2
BTNL8 WILD-TYPE	35	21	17

'BTNL8 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0783 (Fisher's exact test), Q value = 1

Table S1324. Gene #166: 'BTNL8 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
BTNL8 MUTATED	1	5	5
BTNL8 WILD-TYPE	0	26	47

'BTNL8 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1325. Gene #166: 'BTNL8 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
BTNL8 MUTATED	4	3	1	3
BTNL8 WILD-TYPE	27	17	10	19

'BTNL8 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.401 (Fisher's exact test), Q value = 1

Table S1326. Gene #166: 'BTNL8 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
BTNL8 MUTATED	3	2	6
BTNL8 WILD-TYPE	34	14	25

'BTNL8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.77 (Fisher's exact test), Q value = 1

Table S1327. Gene #166: 'BTNL8 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
BTNL8 MUTATED	4	3	4
BTNL8 WILD-TYPE	34	17	22

'BTNL8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.7 (Fisher's exact test), Q value = 1

Table S1328. Gene #166: 'BTNL8 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
BTNL8 MUTATED	5	2	4
BTNL8 WILD-TYPE	22	17	34

'SERTAD1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.3 (Fisher's exact test), Q value = 1

Table S1329. Gene #167: 'SERTAD1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
SERTAD1 MUTATED	3	4	0
SERTAD1 WILD-TYPE	21	41	21

'SERTAD1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.789 (Fisher's exact test), Q value = 1

Table S1330. Gene #167: 'SERTAD1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
SERTAD1 MUTATED	3	3	1
SERTAD1 WILD-TYPE	28	32	23

'SERTAD1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.455 (Fisher's exact test), Q value = 1

Table S1331. Gene #167: 'SERTAD1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
SERTAD1 MUTATED	3	1	3
SERTAD1 WILD-TYPE	37	24	16

'SERTAD1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0646 (Fisher's exact test), Q value = 1

Table S1332. Gene #167: 'SERTAD1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
SERTAD1 MUTATED	1	3	3
SERTAD1 WILD-TYPE	0	28	49

'SERTAD1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.49 (Fisher's exact test), Q value = 1

Table S1333. Gene #167: 'SERTAD1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
SERTAD1 MUTATED	2	2	2	1
SERTAD1 WILD-TYPE	29	18	9	21

'SERTAD1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.672 (Fisher's exact test), Q value = 1

Table S1334. Gene #167: 'SERTAD1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
SERTAD1 MUTATED	2	2	3
SERTAD1 WILD-TYPE	35	14	28

'SERTAD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.602 (Fisher's exact test), Q value = 1

Table S1335. Gene #167: 'SERTAD1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
SERTAD1 MUTATED	2	2	3
SERTAD1 WILD-TYPE	36	18	23

'SERTAD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1336. Gene #167: 'SERTAD1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
SERTAD1 MUTATED	2	2	3
SERTAD1 WILD-TYPE	25	17	35

'SYT2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.592 (Fisher's exact test), Q value = 1

Table S1337. Gene #168: 'SYT2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
SYT2 MUTATED	1	6	2
SYT2 WILD-TYPE	23	39	19

'SYT2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.263 (Fisher's exact test), Q value = 1

Table S1338. Gene #168: 'SYT2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
SYT2 MUTATED	2	6	1
SYT2 WILD-TYPE	29	29	23

'SYT2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.277 (Fisher's exact test), Q value = 1

Table S1339. Gene #168: 'SYT2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
SYT2 MUTATED	2	4	3
SYT2 WILD-TYPE	38	21	16

'SYT2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.172 (Fisher's exact test), Q value = 1

Table S1340. Gene #168: 'SYT2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
SYT2 MUTATED	0	6	3
SYT2 WILD-TYPE	1	25	49

'SYT2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.47 (Fisher's exact test), Q value = 1

Table S1341. Gene #168: 'SYT2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
SYT2 MUTATED	2	4	1	2
SYT2 WILD-TYPE	29	16	10	20

'SYT2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.341 (Fisher's exact test), Q value = 1

Table S1342. Gene #168: 'SYT2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
SYT2 MUTATED	2	2	5
SYT2 WILD-TYPE	35	14	26

'SYT2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.817 (Fisher's exact test), Q value = 1

Table S1343. Gene #168: 'SYT2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
SYT2 MUTATED	4	3	2
SYT2 WILD-TYPE	34	17	24

'SYT2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.742 (Fisher's exact test), Q value = 1

Table S1344. Gene #168: 'SYT2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
SYT2 MUTATED	4	2	3
SYT2 WILD-TYPE	23	17	35

'ZFP36 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.186 (Fisher's exact test), Q value = 1

Table S1345. Gene #169: 'ZFP36 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
ZFP36 MUTATED	0	6	2
ZFP36 WILD-TYPE	24	39	19

'ZFP36 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0401 (Fisher's exact test), Q value = 1

Table S1346. Gene #169: 'ZFP36 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
ZFP36 MUTATED	0	6	2
ZFP36 WILD-TYPE	31	29	22

Figure S100. Get High-res Image Gene #169: 'ZFP36 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'ZFP36 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0491 (Fisher's exact test), Q value = 1

Table S1347. Gene #169: 'ZFP36 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
ZFP36 MUTATED	1	3	4
ZFP36 WILD-TYPE	39	22	15

Figure S101. Get High-res Image Gene #169: 'ZFP36 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

'ZFP36 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0826 (Fisher's exact test), Q value = 1

Table S1348. Gene #169: 'ZFP36 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
ZFP36 MUTATED	0	6	2
ZFP36 WILD-TYPE	1	25	50

'ZFP36 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0212 (Fisher's exact test), Q value = 1

Table S1349. Gene #169: 'ZFP36 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
ZFP36 MUTATED	0	3	3	2
ZFP36 WILD-TYPE	31	17	8	20

Figure S102. Get High-res Image Gene #169: 'ZFP36 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

'ZFP36 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.125 (Fisher's exact test), Q value = 1

Table S1350. Gene #169: 'ZFP36 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
ZFP36 MUTATED	1	2	5
ZFP36 WILD-TYPE	36	14	26

'ZFP36 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.127 (Fisher's exact test), Q value = 1

Table S1351. Gene #169: 'ZFP36 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
ZFP36 MUTATED	1	3	4
ZFP36 WILD-TYPE	37	17	22

'ZFP36 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0933 (Fisher's exact test), Q value = 1

Table S1352. Gene #169: 'ZFP36 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
ZFP36 MUTATED	5	2	1
ZFP36 WILD-TYPE	22	17	37

'UHRF1BP1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.587 (Fisher's exact test), Q value = 1

Table S1353. Gene #170: 'UHRF1BP1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
UHRF1BP1 MUTATED	2	5	4
UHRF1BP1 WILD-TYPE	22	40	17

'UHRF1BP1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1354. Gene #170: 'UHRF1BP1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
UHRF1BP1 MUTATED	4	4	3
UHRF1BP1 WILD-TYPE	27	31	21

'UHRF1BP1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.919 (Fisher's exact test), Q value = 1

Table S1355. Gene #170: 'UHRF1BP1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
UHRF1BP1 MUTATED	5	3	3
UHRF1BP1 WILD-TYPE	35	22	16

'UHRF1BP1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0357 (Fisher's exact test), Q value = 1

Table S1356. Gene #170: 'UHRF1BP1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
UHRF1BP1 MUTATED	1	6	4
UHRF1BP1 WILD-TYPE	0	25	48

Figure S103. Get High-res Image Gene #170: 'UHRF1BP1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'UHRF1BP1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0263 (Fisher's exact test), Q value = 1

Table S1357. Gene #170: 'UHRF1BP1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
UHRF1BP1 MUTATED	3	5	3	0
UHRF1BP1 WILD-TYPE	28	15	8	22

Figure S104. Get High-res Image Gene #170: 'UHRF1BP1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

'UHRF1BP1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.441 (Fisher's exact test), Q value = 1

Table S1358. Gene #170: 'UHRF1BP1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
UHRF1BP1 MUTATED	3	3	5
UHRF1BP1 WILD-TYPE	34	13	26

'UHRF1BP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.313 (Fisher's exact test), Q value = 1

Table S1359. Gene #170: 'UHRF1BP1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
UHRF1BP1 MUTATED	3	4	4
UHRF1BP1 WILD-TYPE	35	16	22

'UHRF1BP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.344 (Fisher's exact test), Q value = 1

Table S1360. Gene #170: 'UHRF1BP1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
UHRF1BP1 MUTATED	5	3	3
UHRF1BP1 WILD-TYPE	22	16	35

'TTK MUTATION STATUS' versus 'CN_CNMF'

P value = 0.659 (Fisher's exact test), Q value = 1

Table S1361. Gene #171: 'TTK MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
TTK MUTATED	2	6	1
TTK WILD-TYPE	22	39	20

'TTK MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.743 (Fisher's exact test), Q value = 1

Table S1362. Gene #171: 'TTK MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
TTK MUTATED	2	4	3
TTK WILD-TYPE	29	31	21

'TTK MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.902 (Fisher's exact test), Q value = 1

Table S1363. Gene #171: 'TTK MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
TTK MUTATED	5	2	2
TTK WILD-TYPE	35	23	17

'TTK MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.128 (Fisher's exact test), Q value = 1

Table S1364. Gene #171: 'TTK MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
TTK MUTATED	1	3	5
TTK WILD-TYPE	0	28	47

'TTK MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.622 (Fisher's exact test), Q value = 1

Table S1365. Gene #171: 'TTK MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
TTK MUTATED	2	2	2	3
TTK WILD-TYPE	29	18	9	19

'TTK MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1366. Gene #171: 'TTK MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
TTK MUTATED	4	2	3
TTK WILD-TYPE	33	14	28

'TTK MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.672 (Fisher's exact test), Q value = 1

Table S1367. Gene #171: 'TTK MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
TTK MUTATED	3	3	3
TTK WILD-TYPE	35	17	23

'TTK MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1368. Gene #171: 'TTK MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
TTK MUTATED	3	2	4
TTK WILD-TYPE	24	17	34

'CCDC135 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.9 (Fisher's exact test), Q value = 1

Table S1369. Gene #172: 'CCDC135 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
CCDC135 MUTATED	3	4	2
CCDC135 WILD-TYPE	21	41	19

'CCDC135 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.33 (Fisher's exact test), Q value = 1

Table S1370. Gene #172: 'CCDC135 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
CCDC135 MUTATED	5	3	1
CCDC135 WILD-TYPE	26	32	23

'CCDC135 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.902 (Fisher's exact test), Q value = 1

Table S1371. Gene #172: 'CCDC135 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
CCDC135 MUTATED	5	2	2
CCDC135 WILD-TYPE	35	23	17

'CCDC135 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.128 (Fisher's exact test), Q value = 1

Table S1372. Gene #172: 'CCDC135 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
CCDC135 MUTATED	1	3	5
CCDC135 WILD-TYPE	0	28	47

'CCDC135 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.729 (Fisher's exact test), Q value = 1

Table S1373. Gene #172: 'CCDC135 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
CCDC135 MUTATED	4	3	0	2
CCDC135 WILD-TYPE	27	17	11	20

'CCDC135 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1374. Gene #172: 'CCDC135 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
CCDC135 MUTATED	4	2	3
CCDC135 WILD-TYPE	33	14	28

'CCDC135 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.817 (Fisher's exact test), Q value = 1

Table S1375. Gene #172: 'CCDC135 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
CCDC135 MUTATED	4	3	2
CCDC135 WILD-TYPE	34	17	24

'CCDC135 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1376. Gene #172: 'CCDC135 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
CCDC135 MUTATED	3	2	4
CCDC135 WILD-TYPE	24	17	34

'TNFRSF9 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.868 (Fisher's exact test), Q value = 1

Table S1377. Gene #173: 'TNFRSF9 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
TNFRSF9 MUTATED	1	4	1
TNFRSF9 WILD-TYPE	23	41	20

'TNFRSF9 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.497 (Fisher's exact test), Q value = 1

Table S1378. Gene #173: 'TNFRSF9 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
TNFRSF9 MUTATED	1	4	1
TNFRSF9 WILD-TYPE	30	31	23

'TNFRSF9 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0502 (Fisher's exact test), Q value = 1

Table S1379. Gene #173: 'TNFRSF9 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
TNFRSF9 MUTATED	1	1	4
TNFRSF9 WILD-TYPE	39	24	15

'TNFRSF9 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.248 (Fisher's exact test), Q value = 1

Table S1380. Gene #173: 'TNFRSF9 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
TNFRSF9 MUTATED	0	4	2
TNFRSF9 WILD-TYPE	1	27	50

'TNFRSF9 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.119 (Fisher's exact test), Q value = 1

Table S1381. Gene #173: 'TNFRSF9 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
TNFRSF9 MUTATED	0	2	1	3
TNFRSF9 WILD-TYPE	31	18	10	19

'TNFRSF9 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.74 (Fisher's exact test), Q value = 1

Table S1382. Gene #173: 'TNFRSF9 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
TNFRSF9 MUTATED	2	2	2
TNFRSF9 WILD-TYPE	35	14	29

'TNFRSF9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.307 (Fisher's exact test), Q value = 1

Table S1383. Gene #173: 'TNFRSF9 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
TNFRSF9 MUTATED	1	2	3
TNFRSF9 WILD-TYPE	37	18	23

'TNFRSF9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.862 (Fisher's exact test), Q value = 1

Table S1384. Gene #173: 'TNFRSF9 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
TNFRSF9 MUTATED	2	2	2
TNFRSF9 WILD-TYPE	25	17	36

'UBL4A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.837 (Fisher's exact test), Q value = 1

Table S1385. Gene #174: 'UBL4A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
UBL4A MUTATED	2	2	1
UBL4A WILD-TYPE	22	43	20

'UBL4A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1386. Gene #174: 'UBL4A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
UBL4A MUTATED	2	2	1
UBL4A WILD-TYPE	29	33	23

'UBL4A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.188 (Fisher's exact test), Q value = 1

Table S1387. Gene #174: 'UBL4A MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
UBL4A MUTATED	3	0	2
UBL4A WILD-TYPE	37	25	17

'UBL4A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1388. Gene #174: 'UBL4A MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
UBL4A MUTATED	0	2	3
UBL4A WILD-TYPE	1	29	49

'UBL4A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.858 (Fisher's exact test), Q value = 1

Table S1389. Gene #174: 'UBL4A MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
UBL4A MUTATED	3	1	0	1
UBL4A WILD-TYPE	28	19	11	21

'UBL4A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.839 (Fisher's exact test), Q value = 1

Table S1390. Gene #174: 'UBL4A MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
UBL4A MUTATED	3	1	1
UBL4A WILD-TYPE	34	15	30

'UBL4A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.852 (Fisher's exact test), Q value = 1

Table S1391. Gene #174: 'UBL4A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
UBL4A MUTATED	3	1	1
UBL4A WILD-TYPE	35	19	25

'UBL4A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.848 (Fisher's exact test), Q value = 1

Table S1392. Gene #174: 'UBL4A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
UBL4A MUTATED	1	1	3
UBL4A WILD-TYPE	26	18	35

'PURB MUTATION STATUS' versus 'CN_CNMF'

P value = 0.868 (Fisher's exact test), Q value = 1

Table S1393. Gene #175: 'PURB MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
PURB MUTATED	1	4	1
PURB WILD-TYPE	23	41	20

'PURB MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.232 (Fisher's exact test), Q value = 1

Table S1394. Gene #175: 'PURB MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
PURB MUTATED	2	4	0
PURB WILD-TYPE	29	31	24

'PURB MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1395. Gene #175: 'PURB MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
PURB MUTATED	3	2	1
PURB WILD-TYPE	37	23	18

'PURB MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1396. Gene #175: 'PURB MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
PURB MUTATED	0	2	4
PURB WILD-TYPE	1	29	48

'PURB MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.498 (Fisher's exact test), Q value = 1

Table S1397. Gene #175: 'PURB MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
PURB MUTATED	1	1	1	3
PURB WILD-TYPE	30	19	10	19

'PURB MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.649 (Fisher's exact test), Q value = 1

Table S1398. Gene #175: 'PURB MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
PURB MUTATED	3	0	3
PURB WILD-TYPE	34	16	28

'PURB MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.758 (Fisher's exact test), Q value = 1

Table S1399. Gene #175: 'PURB MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
PURB MUTATED	3	2	1
PURB WILD-TYPE	35	18	25

'PURB MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.409 (Fisher's exact test), Q value = 1

Table S1400. Gene #175: 'PURB MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
PURB MUTATED	3	0	3
PURB WILD-TYPE	24	19	35

'GABBR1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.512 (Fisher's exact test), Q value = 1

Table S1401. Gene #176: 'GABBR1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
GABBR1 MUTATED	2	7	1
GABBR1 WILD-TYPE	22	38	20

'GABBR1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.917 (Fisher's exact test), Q value = 1

Table S1402. Gene #176: 'GABBR1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
GABBR1 MUTATED	4	4	2
GABBR1 WILD-TYPE	27	31	22

'GABBR1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.221 (Fisher's exact test), Q value = 1

Table S1403. Gene #176: 'GABBR1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
GABBR1 MUTATED	5	1	4
GABBR1 WILD-TYPE	35	24	15

'GABBR1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.117 (Fisher's exact test), Q value = 1

Table S1404. Gene #176: 'GABBR1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
GABBR1 MUTATED	1	4	5
GABBR1 WILD-TYPE	0	27	47

'GABBR1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.706 (Fisher's exact test), Q value = 1

Table S1405. Gene #176: 'GABBR1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
GABBR1 MUTATED	4	1	2	3
GABBR1 WILD-TYPE	27	19	9	19

'GABBR1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1406. Gene #176: 'GABBR1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
GABBR1 MUTATED	4	2	4
GABBR1 WILD-TYPE	33	14	27

'GABBR1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.349 (Fisher's exact test), Q value = 1

Table S1407. Gene #176: 'GABBR1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
GABBR1 MUTATED	4	1	5
GABBR1 WILD-TYPE	34	19	21

'GABBR1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1408. Gene #176: 'GABBR1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
GABBR1 MUTATED	3	2	5
GABBR1 WILD-TYPE	24	17	33

'ADAM30 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0613 (Fisher's exact test), Q value = 1

Table S1409. Gene #177: 'ADAM30 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
ADAM30 MUTATED	5	4	0
ADAM30 WILD-TYPE	19	41	21

'ADAM30 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.614 (Fisher's exact test), Q value = 1

Table S1410. Gene #177: 'ADAM30 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
ADAM30 MUTATED	4	4	1
ADAM30 WILD-TYPE	27	31	23

'ADAM30 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1411. Gene #177: 'ADAM30 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
ADAM30 MUTATED	4	3	2
ADAM30 WILD-TYPE	36	22	17

'ADAM30 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.751 (Fisher's exact test), Q value = 1

Table S1412. Gene #177: 'ADAM30 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
ADAM30 MUTATED	0	4	5
ADAM30 WILD-TYPE	1	27	47

'ADAM30 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.664 (Fisher's exact test), Q value = 1

Table S1413. Gene #177: 'ADAM30 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
ADAM30 MUTATED	5	2	1	1
ADAM30 WILD-TYPE	26	18	10	21

'ADAM30 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1414. Gene #177: 'ADAM30 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
ADAM30 MUTATED	4	2	3
ADAM30 WILD-TYPE	33	14	28

'ADAM30 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.479 (Fisher's exact test), Q value = 1

Table S1415. Gene #177: 'ADAM30 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
ADAM30 MUTATED	6	1	2
ADAM30 WILD-TYPE	32	19	24

'ADAM30 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.9 (Fisher's exact test), Q value = 1

Table S1416. Gene #177: 'ADAM30 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
ADAM30 MUTATED	2	2	5
ADAM30 WILD-TYPE	25	17	33

'NR4A3 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1417. Gene #178: 'NR4A3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
NR4A3 MUTATED	2	4	1
NR4A3 WILD-TYPE	22	41	20

'NR4A3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0384 (Fisher's exact test), Q value = 1

Table S1418. Gene #178: 'NR4A3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
NR4A3 MUTATED	3	0	4
NR4A3 WILD-TYPE	28	35	20

Figure S105. Get High-res Image Gene #178: 'NR4A3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'NR4A3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.592 (Fisher's exact test), Q value = 1

Table S1419. Gene #178: 'NR4A3 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
NR4A3 MUTATED	5	1	1
NR4A3 WILD-TYPE	35	24	18

'NR4A3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0426 (Fisher's exact test), Q value = 1

Table S1420. Gene #178: 'NR4A3 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
NR4A3 MUTATED	1	1	5
NR4A3 WILD-TYPE	0	30	47

Figure S106. Get High-res Image Gene #178: 'NR4A3 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'NR4A3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.854 (Fisher's exact test), Q value = 1

Table S1421. Gene #178: 'NR4A3 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
NR4A3 MUTATED	3	2	0	2
NR4A3 WILD-TYPE	28	18	11	20

'NR4A3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.877 (Fisher's exact test), Q value = 1

Table S1422. Gene #178: 'NR4A3 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
NR4A3 MUTATED	4	1	2
NR4A3 WILD-TYPE	33	15	29

'NR4A3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.682 (Fisher's exact test), Q value = 1

Table S1423. Gene #178: 'NR4A3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
NR4A3 MUTATED	4	2	1
NR4A3 WILD-TYPE	34	18	25

'NR4A3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.888 (Fisher's exact test), Q value = 1

Table S1424. Gene #178: 'NR4A3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
NR4A3 MUTATED	2	1	4
NR4A3 WILD-TYPE	25	18	34

'MAMSTR MUTATION STATUS' versus 'CN_CNMF'

P value = 0.224 (Fisher's exact test), Q value = 1

Table S1425. Gene #179: 'MAMSTR MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
MAMSTR MUTATED	3	2	0
MAMSTR WILD-TYPE	21	43	21

'MAMSTR MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.622 (Fisher's exact test), Q value = 1

Table S1426. Gene #179: 'MAMSTR MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
MAMSTR MUTATED	2	1	2
MAMSTR WILD-TYPE	29	34	22

'MAMSTR MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.018 (Fisher's exact test), Q value = 1

Table S1427. Gene #179: 'MAMSTR MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
MAMSTR MUTATED	0	4	1
MAMSTR WILD-TYPE	40	21	18

Figure S107. Get High-res Image Gene #179: 'MAMSTR MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

'MAMSTR MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1428. Gene #179: 'MAMSTR MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
MAMSTR MUTATED	0	2	3
MAMSTR WILD-TYPE	1	29	49

'MAMSTR MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0251 (Fisher's exact test), Q value = 1

Table S1429. Gene #179: 'MAMSTR MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
MAMSTR MUTATED	0	4	0	1
MAMSTR WILD-TYPE	31	16	11	21

Figure S108. Get High-res Image Gene #179: 'MAMSTR MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

'MAMSTR MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.201 (Fisher's exact test), Q value = 1

Table S1430. Gene #179: 'MAMSTR MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
MAMSTR MUTATED	1	0	4
MAMSTR WILD-TYPE	36	16	27

'MAMSTR MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0344 (Fisher's exact test), Q value = 1

Table S1431. Gene #179: 'MAMSTR MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
MAMSTR MUTATED	0	3	2
MAMSTR WILD-TYPE	38	17	24

Figure S109. Get High-res Image Gene #179: 'MAMSTR MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

'MAMSTR MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.087 (Fisher's exact test), Q value = 1

Table S1432. Gene #179: 'MAMSTR MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
MAMSTR MUTATED	4	0	1
MAMSTR WILD-TYPE	23	19	37

'ZC3H7B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.158 (Fisher's exact test), Q value = 1

Table S1433. Gene #180: 'ZC3H7B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
ZC3H7B MUTATED	2	7	0
ZC3H7B WILD-TYPE	22	38	21

'ZC3H7B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.263 (Fisher's exact test), Q value = 1

Table S1434. Gene #180: 'ZC3H7B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
ZC3H7B MUTATED	2	6	1
ZC3H7B WILD-TYPE	29	29	23

'ZC3H7B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1435. Gene #180: 'ZC3H7B MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
ZC3H7B MUTATED	4	3	2
ZC3H7B WILD-TYPE	36	22	17

'ZC3H7B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0703 (Fisher's exact test), Q value = 1

Table S1436. Gene #180: 'ZC3H7B MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
ZC3H7B MUTATED	1	4	4
ZC3H7B WILD-TYPE	0	27	48

'ZC3H7B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.268 (Fisher's exact test), Q value = 1

Table S1437. Gene #180: 'ZC3H7B MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
ZC3H7B MUTATED	1	3	1	4
ZC3H7B WILD-TYPE	30	17	10	18

'ZC3H7B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.728 (Fisher's exact test), Q value = 1

Table S1438. Gene #180: 'ZC3H7B MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
ZC3H7B MUTATED	3	2	4
ZC3H7B WILD-TYPE	34	14	27

'ZC3H7B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0545 (Fisher's exact test), Q value = 1

Table S1439. Gene #180: 'ZC3H7B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
ZC3H7B MUTATED	1	4	4
ZC3H7B WILD-TYPE	37	16	22

'ZC3H7B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0525 (Fisher's exact test), Q value = 1

Table S1440. Gene #180: 'ZC3H7B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
ZC3H7B MUTATED	4	4	1
ZC3H7B WILD-TYPE	23	15	37

'IFFO1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.558 (Fisher's exact test), Q value = 1

Table S1441. Gene #181: 'IFFO1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
IFFO1 MUTATED	2	3	3
IFFO1 WILD-TYPE	22	42	18

'IFFO1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.262 (Fisher's exact test), Q value = 1

Table S1442. Gene #181: 'IFFO1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
IFFO1 MUTATED	4	1	3
IFFO1 WILD-TYPE	27	34	21

'IFFO1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.121 (Fisher's exact test), Q value = 1

Table S1443. Gene #181: 'IFFO1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
IFFO1 MUTATED	6	0	2
IFFO1 WILD-TYPE	34	25	17

'IFFO1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.11 (Fisher's exact test), Q value = 1

Table S1444. Gene #181: 'IFFO1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
IFFO1 MUTATED	1	2	5
IFFO1 WILD-TYPE	0	29	47

'IFFO1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.422 (Fisher's exact test), Q value = 1

Table S1445. Gene #181: 'IFFO1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
IFFO1 MUTATED	3	1	0	4
IFFO1 WILD-TYPE	28	19	11	18

'IFFO1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.27 (Fisher's exact test), Q value = 1

Table S1446. Gene #181: 'IFFO1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
IFFO1 MUTATED	5	2	1
IFFO1 WILD-TYPE	32	14	30

'IFFO1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.712 (Fisher's exact test), Q value = 1

Table S1447. Gene #181: 'IFFO1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
IFFO1 MUTATED	5	1	2
IFFO1 WILD-TYPE	33	19	24

'IFFO1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.5 (Fisher's exact test), Q value = 1

Table S1448. Gene #181: 'IFFO1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
IFFO1 MUTATED	1	2	5
IFFO1 WILD-TYPE	26	17	33

'C6ORF165 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.27 (Fisher's exact test), Q value = 1

Table S1449. Gene #182: 'C6ORF165 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
C6ORF165 MUTATED	2	6	0
C6ORF165 WILD-TYPE	22	39	21

'C6ORF165 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.456 (Fisher's exact test), Q value = 1

Table S1450. Gene #182: 'C6ORF165 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
C6ORF165 MUTATED	2	5	1
C6ORF165 WILD-TYPE	29	30	23

'C6ORF165 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.348 (Fisher's exact test), Q value = 1

Table S1451. Gene #182: 'C6ORF165 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
C6ORF165 MUTATED	2	3	3
C6ORF165 WILD-TYPE	38	22	16

'C6ORF165 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00112 (Fisher's exact test), Q value = 1

Table S1452. Gene #182: 'C6ORF165 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
C6ORF165 MUTATED	1	6	1
C6ORF165 WILD-TYPE	0	25	51

Figure S110. Get High-res Image Gene #182: 'C6ORF165 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'C6ORF165 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.115 (Fisher's exact test), Q value = 1

Table S1453. Gene #182: 'C6ORF165 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
C6ORF165 MUTATED	1	4	2	1
C6ORF165 WILD-TYPE	30	16	9	21

'C6ORF165 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.125 (Fisher's exact test), Q value = 1

Table S1454. Gene #182: 'C6ORF165 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
C6ORF165 MUTATED	1	2	5
C6ORF165 WILD-TYPE	36	14	26

'C6ORF165 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0743 (Fisher's exact test), Q value = 1

Table S1455. Gene #182: 'C6ORF165 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
C6ORF165 MUTATED	1	4	3
C6ORF165 WILD-TYPE	37	16	23

'C6ORF165 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0933 (Fisher's exact test), Q value = 1

Table S1456. Gene #182: 'C6ORF165 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
C6ORF165 MUTATED	5	2	1
C6ORF165 WILD-TYPE	22	17	37

'RBM33 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.194 (Fisher's exact test), Q value = 1

Table S1457. Gene #183: 'RBM33 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
RBM33 MUTATED	4	5	0
RBM33 WILD-TYPE	20	40	21

'RBM33 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.908 (Fisher's exact test), Q value = 1

Table S1458. Gene #183: 'RBM33 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
RBM33 MUTATED	3	3	3
RBM33 WILD-TYPE	28	32	21

'RBM33 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0713 (Fisher's exact test), Q value = 1

Table S1459. Gene #183: 'RBM33 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
RBM33 MUTATED	3	1	5
RBM33 WILD-TYPE	37	24	14

'RBM33 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0359 (Fisher's exact test), Q value = 1

Table S1460. Gene #183: 'RBM33 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
RBM33 MUTATED	1	5	3
RBM33 WILD-TYPE	0	26	49

Figure S111. Get High-res Image Gene #183: 'RBM33 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'RBM33 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.205 (Fisher's exact test), Q value = 1

Table S1461. Gene #183: 'RBM33 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
RBM33 MUTATED	2	2	0	5
RBM33 WILD-TYPE	29	18	11	17

'RBM33 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.148 (Fisher's exact test), Q value = 1

Table S1462. Gene #183: 'RBM33 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
RBM33 MUTATED	3	4	2
RBM33 WILD-TYPE	34	12	29

'RBM33 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.204 (Fisher's exact test), Q value = 1

Table S1463. Gene #183: 'RBM33 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
RBM33 MUTATED	2	2	5
RBM33 WILD-TYPE	36	18	21

'RBM33 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.285 (Fisher's exact test), Q value = 1

Table S1464. Gene #183: 'RBM33 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
RBM33 MUTATED	2	4	3
RBM33 WILD-TYPE	25	15	35

'OSBPL1A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.733 (Fisher's exact test), Q value = 1

Table S1465. Gene #184: 'OSBPL1A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
OSBPL1A MUTATED	3	5	1
OSBPL1A WILD-TYPE	21	40	20

'OSBPL1A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.237 (Fisher's exact test), Q value = 1

Table S1466. Gene #184: 'OSBPL1A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
OSBPL1A MUTATED	1	4	4
OSBPL1A WILD-TYPE	30	31	20

'OSBPL1A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.902 (Fisher's exact test), Q value = 1

Table S1467. Gene #184: 'OSBPL1A MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
OSBPL1A MUTATED	5	2	2
OSBPL1A WILD-TYPE	35	23	17

'OSBPL1A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0703 (Fisher's exact test), Q value = 1

Table S1468. Gene #184: 'OSBPL1A MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
OSBPL1A MUTATED	1	4	4
OSBPL1A WILD-TYPE	0	27	48

'OSBPL1A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.884 (Fisher's exact test), Q value = 1

Table S1469. Gene #184: 'OSBPL1A MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
OSBPL1A MUTATED	3	2	2	2
OSBPL1A WILD-TYPE	28	18	9	20

'OSBPL1A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1470. Gene #184: 'OSBPL1A MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
OSBPL1A MUTATED	4	2	3
OSBPL1A WILD-TYPE	33	14	28

'OSBPL1A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.672 (Fisher's exact test), Q value = 1

Table S1471. Gene #184: 'OSBPL1A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
OSBPL1A MUTATED	3	3	3
OSBPL1A WILD-TYPE	35	17	23

'OSBPL1A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1472. Gene #184: 'OSBPL1A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
OSBPL1A MUTATED	3	2	4
OSBPL1A WILD-TYPE	24	17	34

'PPP1R10 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.338 (Fisher's exact test), Q value = 1

Table S1473. Gene #185: 'PPP1R10 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
PPP1R10 MUTATED	2	8	1
PPP1R10 WILD-TYPE	22	37	20

'PPP1R10 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0702 (Fisher's exact test), Q value = 1

Table S1474. Gene #185: 'PPP1R10 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
PPP1R10 MUTATED	2	8	1
PPP1R10 WILD-TYPE	29	27	23

'PPP1R10 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0106 (Fisher's exact test), Q value = 1

Table S1475. Gene #185: 'PPP1R10 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
PPP1R10 MUTATED	1	5	5
PPP1R10 WILD-TYPE	39	20	14

Figure S112. Get High-res Image Gene #185: 'PPP1R10 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

'PPP1R10 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.21 (Fisher's exact test), Q value = 1

Table S1476. Gene #185: 'PPP1R10 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
PPP1R10 MUTATED	0	7	4
PPP1R10 WILD-TYPE	1	24	48

'PPP1R10 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.16 (Fisher's exact test), Q value = 1

Table S1477. Gene #185: 'PPP1R10 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
PPP1R10 MUTATED	1	4	2	4
PPP1R10 WILD-TYPE	30	16	9	18

'PPP1R10 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.106 (Fisher's exact test), Q value = 1

Table S1478. Gene #185: 'PPP1R10 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
PPP1R10 MUTATED	2	4	5
PPP1R10 WILD-TYPE	35	12	26

'PPP1R10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.102 (Fisher's exact test), Q value = 1

Table S1479. Gene #185: 'PPP1R10 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
PPP1R10 MUTATED	2	3	6
PPP1R10 WILD-TYPE	36	17	20

'PPP1R10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.308 (Fisher's exact test), Q value = 1

Table S1480. Gene #185: 'PPP1R10 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
PPP1R10 MUTATED	4	4	3
PPP1R10 WILD-TYPE	23	15	35

'TIMM50 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.889 (Fisher's exact test), Q value = 1

Table S1481. Gene #186: 'TIMM50 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
TIMM50 MUTATED	2	5	1
TIMM50 WILD-TYPE	22	40	20

'TIMM50 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.895 (Fisher's exact test), Q value = 1

Table S1482. Gene #186: 'TIMM50 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
TIMM50 MUTATED	2	4	2
TIMM50 WILD-TYPE	29	31	22

'TIMM50 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.801 (Fisher's exact test), Q value = 1

Table S1483. Gene #186: 'TIMM50 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
TIMM50 MUTATED	3	3	2
TIMM50 WILD-TYPE	37	22	17

'TIMM50 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.138 (Fisher's exact test), Q value = 1

Table S1484. Gene #186: 'TIMM50 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
TIMM50 MUTATED	1	3	4
TIMM50 WILD-TYPE	0	28	48

'TIMM50 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.378 (Fisher's exact test), Q value = 1

Table S1485. Gene #186: 'TIMM50 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
TIMM50 MUTATED	1	3	1	3
TIMM50 WILD-TYPE	30	17	10	19

'TIMM50 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.795 (Fisher's exact test), Q value = 1

Table S1486. Gene #186: 'TIMM50 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
TIMM50 MUTATED	3	1	4
TIMM50 WILD-TYPE	34	15	27

'TIMM50 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.637 (Fisher's exact test), Q value = 1

Table S1487. Gene #186: 'TIMM50 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
TIMM50 MUTATED	3	3	2
TIMM50 WILD-TYPE	35	17	24

'TIMM50 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.565 (Fisher's exact test), Q value = 1

Table S1488. Gene #186: 'TIMM50 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
TIMM50 MUTATED	4	1	3
TIMM50 WILD-TYPE	23	18	35

'TMED10 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.868 (Fisher's exact test), Q value = 1

Table S1489. Gene #187: 'TMED10 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
TMED10 MUTATED	1	4	1
TMED10 WILD-TYPE	23	41	20

'TMED10 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.435 (Fisher's exact test), Q value = 1

Table S1490. Gene #187: 'TMED10 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
TMED10 MUTATED	1	2	3
TMED10 WILD-TYPE	30	33	21

'TMED10 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1491. Gene #187: 'TMED10 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
TMED10 MUTATED	3	2	1
TMED10 WILD-TYPE	37	23	18

'TMED10 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.048 (Fisher's exact test), Q value = 1

Table S1492. Gene #187: 'TMED10 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
TMED10 MUTATED	1	1	4
TMED10 WILD-TYPE	0	30	48

Figure S113. Get High-res Image Gene #187: 'TMED10 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'TMED10 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.688 (Fisher's exact test), Q value = 1

Table S1493. Gene #187: 'TMED10 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
TMED10 MUTATED	1	2	1	2
TMED10 WILD-TYPE	30	18	10	20

'TMED10 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.858 (Fisher's exact test), Q value = 1

Table S1494. Gene #187: 'TMED10 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
TMED10 MUTATED	2	1	3
TMED10 WILD-TYPE	35	15	28

'TMED10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.758 (Fisher's exact test), Q value = 1

Table S1495. Gene #187: 'TMED10 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
TMED10 MUTATED	3	2	1
TMED10 WILD-TYPE	35	18	25

'TMED10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.758 (Fisher's exact test), Q value = 1

Table S1496. Gene #187: 'TMED10 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
TMED10 MUTATED	3	1	2
TMED10 WILD-TYPE	24	18	36

'YIPF2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.797 (Fisher's exact test), Q value = 1

Table S1497. Gene #188: 'YIPF2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
YIPF2 MUTATED	3	4	1
YIPF2 WILD-TYPE	21	41	20

'YIPF2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1498. Gene #188: 'YIPF2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
YIPF2 MUTATED	3	3	2
YIPF2 WILD-TYPE	28	32	22

'YIPF2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.892 (Fisher's exact test), Q value = 1

Table S1499. Gene #188: 'YIPF2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
YIPF2 MUTATED	4	3	1
YIPF2 WILD-TYPE	36	22	18

'YIPF2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.138 (Fisher's exact test), Q value = 1

Table S1500. Gene #188: 'YIPF2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
YIPF2 MUTATED	1	3	4
YIPF2 WILD-TYPE	0	28	48

'YIPF2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.527 (Fisher's exact test), Q value = 1

Table S1501. Gene #188: 'YIPF2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
YIPF2 MUTATED	4	3	0	1
YIPF2 WILD-TYPE	27	17	11	21

'YIPF2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.795 (Fisher's exact test), Q value = 1

Table S1502. Gene #188: 'YIPF2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
YIPF2 MUTATED	3	1	4
YIPF2 WILD-TYPE	34	15	27

'YIPF2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.712 (Fisher's exact test), Q value = 1

Table S1503. Gene #188: 'YIPF2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
YIPF2 MUTATED	5	1	2
YIPF2 WILD-TYPE	33	19	24

'YIPF2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.565 (Fisher's exact test), Q value = 1

Table S1504. Gene #188: 'YIPF2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
YIPF2 MUTATED	4	1	3
YIPF2 WILD-TYPE	23	18	35

'TSC22D1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.81 (Fisher's exact test), Q value = 1

Table S1505. Gene #189: 'TSC22D1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
TSC22D1 MUTATED	2	4	3
TSC22D1 WILD-TYPE	22	41	18

'TSC22D1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.335 (Fisher's exact test), Q value = 1

Table S1506. Gene #189: 'TSC22D1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
TSC22D1 MUTATED	4	2	4
TSC22D1 WILD-TYPE	27	33	20

'TSC22D1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.832 (Fisher's exact test), Q value = 1

Table S1507. Gene #189: 'TSC22D1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
TSC22D1 MUTATED	4	4	2
TSC22D1 WILD-TYPE	36	21	17

'TSC22D1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.15 (Fisher's exact test), Q value = 1

Table S1508. Gene #189: 'TSC22D1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
TSC22D1 MUTATED	1	3	6
TSC22D1 WILD-TYPE	0	28	46

'TSC22D1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.585 (Fisher's exact test), Q value = 1

Table S1509. Gene #189: 'TSC22D1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
TSC22D1 MUTATED	4	3	2	1
TSC22D1 WILD-TYPE	27	17	9	21

'TSC22D1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.364 (Fisher's exact test), Q value = 1

Table S1510. Gene #189: 'TSC22D1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
TSC22D1 MUTATED	3	1	6
TSC22D1 WILD-TYPE	34	15	25

'TSC22D1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.755 (Fisher's exact test), Q value = 1

Table S1511. Gene #189: 'TSC22D1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
TSC22D1 MUTATED	5	3	2
TSC22D1 WILD-TYPE	33	17	24

'TSC22D1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.421 (Fisher's exact test), Q value = 1

Table S1512. Gene #189: 'TSC22D1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
TSC22D1 MUTATED	5	1	4
TSC22D1 WILD-TYPE	22	18	34

'ARFGAP3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.884 (Fisher's exact test), Q value = 1

Table S1513. Gene #190: 'ARFGAP3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
ARFGAP3 MUTATED	2	3	2
ARFGAP3 WILD-TYPE	22	42	19

'ARFGAP3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.616 (Fisher's exact test), Q value = 1

Table S1514. Gene #190: 'ARFGAP3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
ARFGAP3 MUTATED	2	2	3
ARFGAP3 WILD-TYPE	29	33	21

'ARFGAP3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.455 (Fisher's exact test), Q value = 1

Table S1515. Gene #190: 'ARFGAP3 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
ARFGAP3 MUTATED	3	1	3
ARFGAP3 WILD-TYPE	37	24	16

'ARFGAP3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1516. Gene #190: 'ARFGAP3 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
ARFGAP3 MUTATED	0	3	4
ARFGAP3 WILD-TYPE	1	28	48

'ARFGAP3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.811 (Fisher's exact test), Q value = 1

Table S1517. Gene #190: 'ARFGAP3 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
ARFGAP3 MUTATED	2	1	1	3
ARFGAP3 WILD-TYPE	29	19	10	19

'ARFGAP3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.768 (Fisher's exact test), Q value = 1

Table S1518. Gene #190: 'ARFGAP3 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
ARFGAP3 MUTATED	3	2	2
ARFGAP3 WILD-TYPE	34	14	29

'ARFGAP3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.355 (Fisher's exact test), Q value = 1

Table S1519. Gene #190: 'ARFGAP3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
ARFGAP3 MUTATED	2	1	4
ARFGAP3 WILD-TYPE	36	19	22

'ARFGAP3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.362 (Fisher's exact test), Q value = 1

Table S1520. Gene #190: 'ARFGAP3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
ARFGAP3 MUTATED	1	3	3
ARFGAP3 WILD-TYPE	26	16	35

'CRYGA MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1521. Gene #191: 'CRYGA MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
CRYGA MUTATED	1	2	1
CRYGA WILD-TYPE	23	43	20

'CRYGA MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1522. Gene #191: 'CRYGA MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
CRYGA MUTATED	1	2	1
CRYGA WILD-TYPE	30	33	23

'CRYGA MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1523. Gene #191: 'CRYGA MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
CRYGA MUTATED	2	1	1
CRYGA WILD-TYPE	38	24	18

'CRYGA MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1524. Gene #191: 'CRYGA MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
CRYGA MUTATED	0	1	3
CRYGA WILD-TYPE	1	30	49

'CRYGA MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.675 (Fisher's exact test), Q value = 1

Table S1525. Gene #191: 'CRYGA MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
CRYGA MUTATED	2	0	1	1
CRYGA WILD-TYPE	29	20	10	21

'CRYGA MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1526. Gene #191: 'CRYGA MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
CRYGA MUTATED	2	1	1
CRYGA WILD-TYPE	35	15	30

'CRYGA MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1527. Gene #191: 'CRYGA MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
CRYGA MUTATED	2	1	1
CRYGA WILD-TYPE	36	19	25

'CRYGA MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1528. Gene #191: 'CRYGA MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
CRYGA MUTATED	1	1	2
CRYGA WILD-TYPE	26	18	36

'PUM2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.27 (Fisher's exact test), Q value = 1

Table S1529. Gene #192: 'PUM2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
PUM2 MUTATED	2	6	0
PUM2 WILD-TYPE	22	39	21

'PUM2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.895 (Fisher's exact test), Q value = 1

Table S1530. Gene #192: 'PUM2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
PUM2 MUTATED	2	4	2
PUM2 WILD-TYPE	29	31	22

'PUM2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.16 (Fisher's exact test), Q value = 1

Table S1531. Gene #192: 'PUM2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
PUM2 MUTATED	2	2	4
PUM2 WILD-TYPE	38	23	15

'PUM2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0125 (Fisher's exact test), Q value = 1

Table S1532. Gene #192: 'PUM2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
PUM2 MUTATED	1	5	2
PUM2 WILD-TYPE	0	26	50

Figure S114. Get High-res Image Gene #192: 'PUM2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'PUM2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.294 (Fisher's exact test), Q value = 1

Table S1533. Gene #192: 'PUM2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
PUM2 MUTATED	1	3	2	2
PUM2 WILD-TYPE	30	17	9	20

'PUM2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.308 (Fisher's exact test), Q value = 1

Table S1534. Gene #192: 'PUM2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
PUM2 MUTATED	2	3	3
PUM2 WILD-TYPE	35	13	28

'PUM2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.127 (Fisher's exact test), Q value = 1

Table S1535. Gene #192: 'PUM2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
PUM2 MUTATED	1	3	4
PUM2 WILD-TYPE	37	17	22

'PUM2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.399 (Fisher's exact test), Q value = 1

Table S1536. Gene #192: 'PUM2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
PUM2 MUTATED	3	3	2
PUM2 WILD-TYPE	24	16	36

'YTHDF1 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1537. Gene #193: 'YTHDF1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
YTHDF1 MUTATED	2	4	2
YTHDF1 WILD-TYPE	22	41	19

'YTHDF1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1538. Gene #193: 'YTHDF1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
YTHDF1 MUTATED	3	3	2
YTHDF1 WILD-TYPE	28	32	22

'YTHDF1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.182 (Fisher's exact test), Q value = 1

Table S1539. Gene #193: 'YTHDF1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
YTHDF1 MUTATED	3	1	4
YTHDF1 WILD-TYPE	37	24	15

'YTHDF1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.515 (Fisher's exact test), Q value = 1

Table S1540. Gene #193: 'YTHDF1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
YTHDF1 MUTATED	0	4	4
YTHDF1 WILD-TYPE	1	27	48

'YTHDF1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.509 (Fisher's exact test), Q value = 1

Table S1541. Gene #193: 'YTHDF1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
YTHDF1 MUTATED	2	1	2	3
YTHDF1 WILD-TYPE	29	19	9	19

'YTHDF1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.176 (Fisher's exact test), Q value = 1

Table S1542. Gene #193: 'YTHDF1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
YTHDF1 MUTATED	4	3	1
YTHDF1 WILD-TYPE	33	13	30

'YTHDF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.565 (Fisher's exact test), Q value = 1

Table S1543. Gene #193: 'YTHDF1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
YTHDF1 MUTATED	3	1	4
YTHDF1 WILD-TYPE	35	19	22

'YTHDF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.353 (Fisher's exact test), Q value = 1

Table S1544. Gene #193: 'YTHDF1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
YTHDF1 MUTATED	1	3	4
YTHDF1 WILD-TYPE	26	16	34

'PLAU MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0506 (Fisher's exact test), Q value = 1

Table S1545. Gene #194: 'PLAU MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
PLAU MUTATED	0	6	0
PLAU WILD-TYPE	24	39	21

'PLAU MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0195 (Fisher's exact test), Q value = 1

Table S1546. Gene #194: 'PLAU MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
PLAU MUTATED	0	6	1
PLAU WILD-TYPE	31	29	23

Figure S115. Get High-res Image Gene #194: 'PLAU MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'PLAU MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.262 (Fisher's exact test), Q value = 1

Table S1547. Gene #194: 'PLAU MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
PLAU MUTATED	2	4	1
PLAU WILD-TYPE	38	21	18

'PLAU MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0249 (Fisher's exact test), Q value = 1

Table S1548. Gene #194: 'PLAU MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
PLAU MUTATED	1	4	2
PLAU WILD-TYPE	0	27	50

Figure S116. Get High-res Image Gene #194: 'PLAU MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'PLAU MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0237 (Fisher's exact test), Q value = 1

Table S1549. Gene #194: 'PLAU MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
PLAU MUTATED	0	4	0	3
PLAU WILD-TYPE	31	16	11	19

Figure S117. Get High-res Image Gene #194: 'PLAU MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

'PLAU MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.129 (Fisher's exact test), Q value = 1

Table S1550. Gene #194: 'PLAU MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
PLAU MUTATED	1	1	5
PLAU WILD-TYPE	36	15	26

'PLAU MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00284 (Fisher's exact test), Q value = 1

Table S1551. Gene #194: 'PLAU MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
PLAU MUTATED	0	5	2
PLAU WILD-TYPE	38	15	24

Figure S118. Get High-res Image Gene #194: 'PLAU MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

'PLAU MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.018 (Fisher's exact test), Q value = 1

Table S1552. Gene #194: 'PLAU MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
PLAU MUTATED	5	2	0
PLAU WILD-TYPE	22	17	38

Figure S119. Get High-res Image Gene #194: 'PLAU MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

'SOS1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.909 (Fisher's exact test), Q value = 1

Table S1553. Gene #195: 'SOS1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
SOS1 MUTATED	2	6	2
SOS1 WILD-TYPE	22	39	19

'SOS1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.781 (Fisher's exact test), Q value = 1

Table S1554. Gene #195: 'SOS1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
SOS1 MUTATED	3	4	4
SOS1 WILD-TYPE	28	31	20

'SOS1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.906 (Fisher's exact test), Q value = 1

Table S1555. Gene #195: 'SOS1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
SOS1 MUTATED	4	3	3
SOS1 WILD-TYPE	36	22	16

'SOS1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0437 (Fisher's exact test), Q value = 1

Table S1556. Gene #195: 'SOS1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
SOS1 MUTATED	1	5	4
SOS1 WILD-TYPE	0	26	48

Figure S120. Get High-res Image Gene #195: 'SOS1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'SOS1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.373 (Fisher's exact test), Q value = 1

Table S1557. Gene #195: 'SOS1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
SOS1 MUTATED	3	4	2	1
SOS1 WILD-TYPE	28	16	9	21

'SOS1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.502 (Fisher's exact test), Q value = 1

Table S1558. Gene #195: 'SOS1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
SOS1 MUTATED	3	3	4
SOS1 WILD-TYPE	34	13	27

'SOS1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.91 (Fisher's exact test), Q value = 1

Table S1559. Gene #195: 'SOS1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
SOS1 MUTATED	4	3	3
SOS1 WILD-TYPE	34	17	23

'SOS1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.515 (Fisher's exact test), Q value = 1

Table S1560. Gene #195: 'SOS1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
SOS1 MUTATED	4	3	3
SOS1 WILD-TYPE	23	16	35

'DPYS MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1561. Gene #196: 'DPYS MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
DPYS MUTATED	2	4	1
DPYS WILD-TYPE	22	41	20

'DPYS MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.233 (Fisher's exact test), Q value = 1

Table S1562. Gene #196: 'DPYS MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
DPYS MUTATED	1	3	4
DPYS WILD-TYPE	30	32	20

'DPYS MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1563. Gene #196: 'DPYS MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
DPYS MUTATED	4	2	2
DPYS WILD-TYPE	36	23	17

'DPYS MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0429 (Fisher's exact test), Q value = 1

Table S1564. Gene #196: 'DPYS MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
DPYS MUTATED	1	4	3
DPYS WILD-TYPE	0	27	49

Figure S121. Get High-res Image Gene #196: 'DPYS MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'DPYS MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.718 (Fisher's exact test), Q value = 1

Table S1565. Gene #196: 'DPYS MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
DPYS MUTATED	3	3	1	1
DPYS WILD-TYPE	28	17	10	21

'DPYS MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.891 (Fisher's exact test), Q value = 1

Table S1566. Gene #196: 'DPYS MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
DPYS MUTATED	3	2	3
DPYS WILD-TYPE	34	14	28

'DPYS MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.637 (Fisher's exact test), Q value = 1

Table S1567. Gene #196: 'DPYS MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
DPYS MUTATED	3	3	2
DPYS WILD-TYPE	35	17	24

'DPYS MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.898 (Fisher's exact test), Q value = 1

Table S1568. Gene #196: 'DPYS MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
DPYS MUTATED	3	2	3
DPYS WILD-TYPE	24	17	35

'CPLX3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.176 (Fisher's exact test), Q value = 1

Table S1569. Gene #197: 'CPLX3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
CPLX3 MUTATED	0	4	0
CPLX3 WILD-TYPE	24	41	21

'CPLX3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.243 (Fisher's exact test), Q value = 1

Table S1570. Gene #197: 'CPLX3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
CPLX3 MUTATED	0	3	1
CPLX3 WILD-TYPE	31	32	23

'CPLX3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0639 (Fisher's exact test), Q value = 1

Table S1571. Gene #197: 'CPLX3 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
CPLX3 MUTATED	0	3	1
CPLX3 WILD-TYPE	40	22	18

'CPLX3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.185 (Fisher's exact test), Q value = 1

Table S1572. Gene #197: 'CPLX3 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
CPLX3 MUTATED	0	3	1
CPLX3 WILD-TYPE	1	28	51

'CPLX3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00627 (Fisher's exact test), Q value = 1

Table S1573. Gene #197: 'CPLX3 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
CPLX3 MUTATED	0	4	0	0
CPLX3 WILD-TYPE	31	16	11	22

Figure S122. Get High-res Image Gene #197: 'CPLX3 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

'CPLX3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.037 (Fisher's exact test), Q value = 1

Table S1574. Gene #197: 'CPLX3 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
CPLX3 MUTATED	0	0	4
CPLX3 WILD-TYPE	37	16	27

Figure S123. Get High-res Image Gene #197: 'CPLX3 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'CPLX3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00251 (Fisher's exact test), Q value = 1

Table S1575. Gene #197: 'CPLX3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
CPLX3 MUTATED	0	4	0
CPLX3 WILD-TYPE	38	16	26

Figure S124. Get High-res Image Gene #197: 'CPLX3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

'CPLX3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0111 (Fisher's exact test), Q value = 1

Table S1576. Gene #197: 'CPLX3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
CPLX3 MUTATED	4	0	0
CPLX3 WILD-TYPE	23	19	38

Figure S125. Get High-res Image Gene #197: 'CPLX3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

'RUNX2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.338 (Fisher's exact test), Q value = 1

Table S1577. Gene #198: 'RUNX2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
RUNX2 MUTATED	2	8	1
RUNX2 WILD-TYPE	22	37	20

'RUNX2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.157 (Fisher's exact test), Q value = 1

Table S1578. Gene #198: 'RUNX2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
RUNX2 MUTATED	1	6	4
RUNX2 WILD-TYPE	30	29	20

'RUNX2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.763 (Fisher's exact test), Q value = 1

Table S1579. Gene #198: 'RUNX2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
RUNX2 MUTATED	4	4	3
RUNX2 WILD-TYPE	36	21	16

'RUNX2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0783 (Fisher's exact test), Q value = 1

Table S1580. Gene #198: 'RUNX2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
RUNX2 MUTATED	1	5	5
RUNX2 WILD-TYPE	0	26	47

'RUNX2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.16 (Fisher's exact test), Q value = 1

Table S1581. Gene #198: 'RUNX2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
RUNX2 MUTATED	1	4	2	4
RUNX2 WILD-TYPE	30	16	9	18

'RUNX2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.441 (Fisher's exact test), Q value = 1

Table S1582. Gene #198: 'RUNX2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
RUNX2 MUTATED	3	3	5
RUNX2 WILD-TYPE	34	13	26

'RUNX2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.313 (Fisher's exact test), Q value = 1

Table S1583. Gene #198: 'RUNX2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
RUNX2 MUTATED	3	4	4
RUNX2 WILD-TYPE	35	16	22

'RUNX2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.344 (Fisher's exact test), Q value = 1

Table S1584. Gene #198: 'RUNX2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
RUNX2 MUTATED	5	3	3
RUNX2 WILD-TYPE	22	16	35

'BCL7C MUTATION STATUS' versus 'CN_CNMF'

P value = 0.805 (Fisher's exact test), Q value = 1

Table S1585. Gene #199: 'BCL7C MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
BCL7C MUTATED	1	3	0
BCL7C WILD-TYPE	23	42	21

'BCL7C MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.448 (Fisher's exact test), Q value = 1

Table S1586. Gene #199: 'BCL7C MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
BCL7C MUTATED	1	3	0
BCL7C WILD-TYPE	30	32	24

'BCL7C MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.68 (Fisher's exact test), Q value = 1

Table S1587. Gene #199: 'BCL7C MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
BCL7C MUTATED	2	2	0
BCL7C WILD-TYPE	38	23	19

'BCL7C MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.645 (Fisher's exact test), Q value = 1

Table S1588. Gene #199: 'BCL7C MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
BCL7C MUTATED	0	2	2
BCL7C WILD-TYPE	1	29	50

'BCL7C MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.742 (Fisher's exact test), Q value = 1

Table S1589. Gene #199: 'BCL7C MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
BCL7C MUTATED	1	2	0	1
BCL7C WILD-TYPE	30	18	11	21

'BCL7C MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.829 (Fisher's exact test), Q value = 1

Table S1590. Gene #199: 'BCL7C MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
BCL7C MUTATED	2	0	2
BCL7C WILD-TYPE	35	16	29

'BCL7C MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.353 (Fisher's exact test), Q value = 1

Table S1591. Gene #199: 'BCL7C MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
BCL7C MUTATED	3	1	0
BCL7C WILD-TYPE	35	19	26

'BCL7C MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.682 (Fisher's exact test), Q value = 1

Table S1592. Gene #199: 'BCL7C MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
BCL7C MUTATED	2	0	2
BCL7C WILD-TYPE	25	19	36

'RGS22 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.838 (Fisher's exact test), Q value = 1

Table S1593. Gene #200: 'RGS22 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
RGS22 MUTATED	2	6	3
RGS22 WILD-TYPE	22	39	18

'RGS22 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.507 (Fisher's exact test), Q value = 1

Table S1594. Gene #200: 'RGS22 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
RGS22 MUTATED	2	5	4
RGS22 WILD-TYPE	29	30	20

'RGS22 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.305 (Fisher's exact test), Q value = 1

Table S1595. Gene #200: 'RGS22 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
RGS22 MUTATED	3	4	4
RGS22 WILD-TYPE	37	21	15

'RGS22 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.405 (Fisher's exact test), Q value = 1

Table S1596. Gene #200: 'RGS22 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
RGS22 MUTATED	0	6	5
RGS22 WILD-TYPE	1	25	47

'RGS22 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.282 (Fisher's exact test), Q value = 1

Table S1597. Gene #200: 'RGS22 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
RGS22 MUTATED	2	5	1	3
RGS22 WILD-TYPE	29	15	10	19

'RGS22 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.911 (Fisher's exact test), Q value = 1

Table S1598. Gene #200: 'RGS22 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
RGS22 MUTATED	4	2	5
RGS22 WILD-TYPE	33	14	26

'RGS22 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.647 (Fisher's exact test), Q value = 1

Table S1599. Gene #200: 'RGS22 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
RGS22 MUTATED	4	4	3
RGS22 WILD-TYPE	34	16	23

'RGS22 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.7 (Fisher's exact test), Q value = 1

Table S1600. Gene #200: 'RGS22 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
RGS22 MUTATED	5	2	4
RGS22 WILD-TYPE	22	17	34

'ERCC3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.716 (Fisher's exact test), Q value = 1

Table S1601. Gene #201: 'ERCC3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
ERCC3 MUTATED	1	5	2
ERCC3 WILD-TYPE	23	40	19

'ERCC3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.409 (Fisher's exact test), Q value = 1

Table S1602. Gene #201: 'ERCC3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
ERCC3 MUTATED	1	4	3
ERCC3 WILD-TYPE	30	31	21

'ERCC3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.626 (Fisher's exact test), Q value = 1

Table S1603. Gene #201: 'ERCC3 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
ERCC3 MUTATED	3	2	3
ERCC3 WILD-TYPE	37	23	16

'ERCC3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.138 (Fisher's exact test), Q value = 1

Table S1604. Gene #201: 'ERCC3 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
ERCC3 MUTATED	1	3	4
ERCC3 WILD-TYPE	0	28	48

'ERCC3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.327 (Fisher's exact test), Q value = 1

Table S1605. Gene #201: 'ERCC3 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
ERCC3 MUTATED	1	2	2	3
ERCC3 WILD-TYPE	30	18	9	19

'ERCC3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1606. Gene #201: 'ERCC3 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
ERCC3 MUTATED	4	1	3
ERCC3 WILD-TYPE	33	15	28

'ERCC3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.353 (Fisher's exact test), Q value = 1

Table S1607. Gene #201: 'ERCC3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
ERCC3 MUTATED	2	2	4
ERCC3 WILD-TYPE	36	18	22

'ERCC3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.802 (Fisher's exact test), Q value = 1

Table S1608. Gene #201: 'ERCC3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
ERCC3 MUTATED	3	1	4
ERCC3 WILD-TYPE	24	18	34

'SYNCRIP MUTATION STATUS' versus 'CN_CNMF'

P value = 0.797 (Fisher's exact test), Q value = 1

Table S1609. Gene #202: 'SYNCRIP MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
SYNCRIP MUTATED	3	4	1
SYNCRIP WILD-TYPE	21	41	20

'SYNCRIP MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1610. Gene #202: 'SYNCRIP MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
SYNCRIP MUTATED	3	3	2
SYNCRIP WILD-TYPE	28	32	22

'SYNCRIP MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.39 (Fisher's exact test), Q value = 1

Table S1611. Gene #202: 'SYNCRIP MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
SYNCRIP MUTATED	6	1	1
SYNCRIP WILD-TYPE	34	24	18

'SYNCRIP MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.11 (Fisher's exact test), Q value = 1

Table S1612. Gene #202: 'SYNCRIP MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
SYNCRIP MUTATED	1	2	5
SYNCRIP WILD-TYPE	0	29	47

'SYNCRIP MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.95 (Fisher's exact test), Q value = 1

Table S1613. Gene #202: 'SYNCRIP MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
SYNCRIP MUTATED	4	1	1	2
SYNCRIP WILD-TYPE	27	19	10	20

'SYNCRIP MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.621 (Fisher's exact test), Q value = 1

Table S1614. Gene #202: 'SYNCRIP MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
SYNCRIP MUTATED	5	1	2
SYNCRIP WILD-TYPE	32	15	29

'SYNCRIP MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.712 (Fisher's exact test), Q value = 1

Table S1615. Gene #202: 'SYNCRIP MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
SYNCRIP MUTATED	5	1	2
SYNCRIP WILD-TYPE	33	19	24

'SYNCRIP MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.707 (Fisher's exact test), Q value = 1

Table S1616. Gene #202: 'SYNCRIP MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
SYNCRIP MUTATED	2	1	5
SYNCRIP WILD-TYPE	25	18	33

'AHDC1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.27 (Fisher's exact test), Q value = 1

Table S1617. Gene #203: 'AHDC1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
AHDC1 MUTATED	2	6	0
AHDC1 WILD-TYPE	22	39	21

'AHDC1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.456 (Fisher's exact test), Q value = 1

Table S1618. Gene #203: 'AHDC1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
AHDC1 MUTATED	2	5	1
AHDC1 WILD-TYPE	29	30	23

'AHDC1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.626 (Fisher's exact test), Q value = 1

Table S1619. Gene #203: 'AHDC1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
AHDC1 MUTATED	3	2	3
AHDC1 WILD-TYPE	37	23	16

'AHDC1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0125 (Fisher's exact test), Q value = 1

Table S1620. Gene #203: 'AHDC1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
AHDC1 MUTATED	1	5	2
AHDC1 WILD-TYPE	0	26	50

Figure S126. Get High-res Image Gene #203: 'AHDC1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'AHDC1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.392 (Fisher's exact test), Q value = 1

Table S1621. Gene #203: 'AHDC1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
AHDC1 MUTATED	2	3	2	1
AHDC1 WILD-TYPE	29	17	9	21

'AHDC1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.308 (Fisher's exact test), Q value = 1

Table S1622. Gene #203: 'AHDC1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
AHDC1 MUTATED	2	3	3
AHDC1 WILD-TYPE	35	13	28

'AHDC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.895 (Fisher's exact test), Q value = 1

Table S1623. Gene #203: 'AHDC1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
AHDC1 MUTATED	3	2	3
AHDC1 WILD-TYPE	35	18	23

'AHDC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.399 (Fisher's exact test), Q value = 1

Table S1624. Gene #203: 'AHDC1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
AHDC1 MUTATED	3	3	2
AHDC1 WILD-TYPE	24	16	36

'CLOCK MUTATION STATUS' versus 'CN_CNMF'

P value = 0.479 (Fisher's exact test), Q value = 1

Table S1625. Gene #204: 'CLOCK MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
CLOCK MUTATED	3	3	3
CLOCK WILD-TYPE	21	42	18

'CLOCK MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.409 (Fisher's exact test), Q value = 1

Table S1626. Gene #204: 'CLOCK MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
CLOCK MUTATED	3	2	4
CLOCK WILD-TYPE	28	33	20

'CLOCK MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1627. Gene #204: 'CLOCK MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
CLOCK MUTATED	4	2	2
CLOCK WILD-TYPE	36	23	17

'CLOCK MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.138 (Fisher's exact test), Q value = 1

Table S1628. Gene #204: 'CLOCK MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
CLOCK MUTATED	1	3	4
CLOCK WILD-TYPE	0	28	48

'CLOCK MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.779 (Fisher's exact test), Q value = 1

Table S1629. Gene #204: 'CLOCK MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
CLOCK MUTATED	2	3	1	2
CLOCK WILD-TYPE	29	17	10	20

'CLOCK MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1630. Gene #204: 'CLOCK MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
CLOCK MUTATED	4	1	3
CLOCK WILD-TYPE	33	15	28

'CLOCK MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.4 (Fisher's exact test), Q value = 1

Table S1631. Gene #204: 'CLOCK MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
CLOCK MUTATED	2	3	3
CLOCK WILD-TYPE	36	17	23

'CLOCK MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.802 (Fisher's exact test), Q value = 1

Table S1632. Gene #204: 'CLOCK MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
CLOCK MUTATED	3	1	4
CLOCK WILD-TYPE	24	18	34

'LRIG1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.492 (Fisher's exact test), Q value = 1

Table S1633. Gene #205: 'LRIG1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
LRIG1 MUTATED	4	6	1
LRIG1 WILD-TYPE	20	39	20

'LRIG1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.92 (Fisher's exact test), Q value = 1

Table S1634. Gene #205: 'LRIG1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
LRIG1 MUTATED	3	5	3
LRIG1 WILD-TYPE	28	30	21

'LRIG1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.919 (Fisher's exact test), Q value = 1

Table S1635. Gene #205: 'LRIG1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
LRIG1 MUTATED	5	3	3
LRIG1 WILD-TYPE	35	22	16

'LRIG1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0783 (Fisher's exact test), Q value = 1

Table S1636. Gene #205: 'LRIG1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
LRIG1 MUTATED	1	5	5
LRIG1 WILD-TYPE	0	26	47

'LRIG1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.745 (Fisher's exact test), Q value = 1

Table S1637. Gene #205: 'LRIG1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
LRIG1 MUTATED	3	4	1	3
LRIG1 WILD-TYPE	28	16	10	19

'LRIG1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.911 (Fisher's exact test), Q value = 1

Table S1638. Gene #205: 'LRIG1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
LRIG1 MUTATED	4	2	5
LRIG1 WILD-TYPE	33	14	26

'LRIG1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.313 (Fisher's exact test), Q value = 1

Table S1639. Gene #205: 'LRIG1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
LRIG1 MUTATED	3	4	4
LRIG1 WILD-TYPE	35	16	22

'LRIG1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.7 (Fisher's exact test), Q value = 1

Table S1640. Gene #205: 'LRIG1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
LRIG1 MUTATED	5	2	4
LRIG1 WILD-TYPE	22	17	34

'SEPT10 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.26 (Fisher's exact test), Q value = 1

Table S1641. Gene #206: 'SEPT10 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
SEPT10 MUTATED	0	5	2
SEPT10 WILD-TYPE	24	40	19

'SEPT10 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.103 (Fisher's exact test), Q value = 1

Table S1642. Gene #206: 'SEPT10 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
SEPT10 MUTATED	0	4	3
SEPT10 WILD-TYPE	31	31	21

'SEPT10 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.885 (Fisher's exact test), Q value = 1

Table S1643. Gene #206: 'SEPT10 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
SEPT10 MUTATED	3	2	2
SEPT10 WILD-TYPE	37	23	17

'SEPT10 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0249 (Fisher's exact test), Q value = 1

Table S1644. Gene #206: 'SEPT10 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
SEPT10 MUTATED	1	4	2
SEPT10 WILD-TYPE	0	27	50

Figure S127. Get High-res Image Gene #206: 'SEPT10 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'SEPT10 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0505 (Fisher's exact test), Q value = 1

Table S1645. Gene #206: 'SEPT10 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
SEPT10 MUTATED	0	3	2	2
SEPT10 WILD-TYPE	31	17	9	20

'SEPT10 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.672 (Fisher's exact test), Q value = 1

Table S1646. Gene #206: 'SEPT10 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
SEPT10 MUTATED	2	2	3
SEPT10 WILD-TYPE	35	14	28

'SEPT10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.602 (Fisher's exact test), Q value = 1

Table S1647. Gene #206: 'SEPT10 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
SEPT10 MUTATED	2	2	3
SEPT10 WILD-TYPE	36	18	23

'SEPT10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.169 (Fisher's exact test), Q value = 1

Table S1648. Gene #206: 'SEPT10 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
SEPT10 MUTATED	3	3	1
SEPT10 WILD-TYPE	24	16	37

'BRD9 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.674 (Fisher's exact test), Q value = 1

Table S1649. Gene #207: 'BRD9 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
BRD9 MUTATED	1	5	1
BRD9 WILD-TYPE	23	40	20

'BRD9 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.103 (Fisher's exact test), Q value = 1

Table S1650. Gene #207: 'BRD9 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
BRD9 MUTATED	0	4	3
BRD9 WILD-TYPE	31	31	21

'BRD9 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.523 (Fisher's exact test), Q value = 1

Table S1651. Gene #207: 'BRD9 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
BRD9 MUTATED	2	3	2
BRD9 WILD-TYPE	38	22	17

'BRD9 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.172 (Fisher's exact test), Q value = 1

Table S1652. Gene #207: 'BRD9 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
BRD9 MUTATED	0	5	2
BRD9 WILD-TYPE	1	26	50

'BRD9 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.445 (Fisher's exact test), Q value = 1

Table S1653. Gene #207: 'BRD9 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
BRD9 MUTATED	1	3	1	2
BRD9 WILD-TYPE	30	17	10	20

'BRD9 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.672 (Fisher's exact test), Q value = 1

Table S1654. Gene #207: 'BRD9 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
BRD9 MUTATED	2	2	3
BRD9 WILD-TYPE	35	14	28

'BRD9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.202 (Fisher's exact test), Q value = 1

Table S1655. Gene #207: 'BRD9 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
BRD9 MUTATED	1	3	3
BRD9 WILD-TYPE	37	17	23

'BRD9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.676 (Fisher's exact test), Q value = 1

Table S1656. Gene #207: 'BRD9 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
BRD9 MUTATED	3	2	2
BRD9 WILD-TYPE	24	17	36

'HMGB3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.805 (Fisher's exact test), Q value = 1

Table S1657. Gene #208: 'HMGB3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
HMGB3 MUTATED	1	3	0
HMGB3 WILD-TYPE	23	42	21

'HMGB3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.243 (Fisher's exact test), Q value = 1

Table S1658. Gene #208: 'HMGB3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
HMGB3 MUTATED	0	3	1
HMGB3 WILD-TYPE	31	32	23

'HMGB3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.343 (Fisher's exact test), Q value = 1

Table S1659. Gene #208: 'HMGB3 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
HMGB3 MUTATED	1	1	2
HMGB3 WILD-TYPE	39	24	17

'HMGB3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.645 (Fisher's exact test), Q value = 1

Table S1660. Gene #208: 'HMGB3 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
HMGB3 MUTATED	0	2	2
HMGB3 WILD-TYPE	1	29	50

'HMGB3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.364 (Fisher's exact test), Q value = 1

Table S1661. Gene #208: 'HMGB3 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
HMGB3 MUTATED	1	0	1	2
HMGB3 WILD-TYPE	30	20	10	20

'HMGB3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.315 (Fisher's exact test), Q value = 1

Table S1662. Gene #208: 'HMGB3 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
HMGB3 MUTATED	1	2	1
HMGB3 WILD-TYPE	36	14	30

'HMGB3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.811 (Fisher's exact test), Q value = 1

Table S1663. Gene #208: 'HMGB3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
HMGB3 MUTATED	1	1	2
HMGB3 WILD-TYPE	37	19	24

'HMGB3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.436 (Fisher's exact test), Q value = 1

Table S1664. Gene #208: 'HMGB3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
HMGB3 MUTATED	1	2	1
HMGB3 WILD-TYPE	26	17	37

'PAMR1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.143 (Fisher's exact test), Q value = 1

Table S1665. Gene #209: 'PAMR1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
PAMR1 MUTATED	0	6	1
PAMR1 WILD-TYPE	24	39	20

'PAMR1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.421 (Fisher's exact test), Q value = 1

Table S1666. Gene #209: 'PAMR1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
PAMR1 MUTATED	1	3	3
PAMR1 WILD-TYPE	30	32	21

'PAMR1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.402 (Fisher's exact test), Q value = 1

Table S1667. Gene #209: 'PAMR1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
PAMR1 MUTATED	2	2	3
PAMR1 WILD-TYPE	38	23	16

'PAMR1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0646 (Fisher's exact test), Q value = 1

Table S1668. Gene #209: 'PAMR1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
PAMR1 MUTATED	1	3	3
PAMR1 WILD-TYPE	0	28	49

'PAMR1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.445 (Fisher's exact test), Q value = 1

Table S1669. Gene #209: 'PAMR1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
PAMR1 MUTATED	1	3	1	2
PAMR1 WILD-TYPE	30	17	10	20

'PAMR1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.129 (Fisher's exact test), Q value = 1

Table S1670. Gene #209: 'PAMR1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
PAMR1 MUTATED	1	1	5
PAMR1 WILD-TYPE	36	15	26

'PAMR1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0783 (Fisher's exact test), Q value = 1

Table S1671. Gene #209: 'PAMR1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
PAMR1 MUTATED	1	4	2
PAMR1 WILD-TYPE	37	16	24

'PAMR1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.414 (Fisher's exact test), Q value = 1

Table S1672. Gene #209: 'PAMR1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
PAMR1 MUTATED	4	1	2
PAMR1 WILD-TYPE	23	18	36

'ZNF704 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.352 (Fisher's exact test), Q value = 1

Table S1673. Gene #210: 'ZNF704 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
ZNF704 MUTATED	0	3	2
ZNF704 WILD-TYPE	24	42	19

'ZNF704 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.733 (Fisher's exact test), Q value = 1

Table S1674. Gene #210: 'ZNF704 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
ZNF704 MUTATED	1	3	1
ZNF704 WILD-TYPE	30	32	23

'ZNF704 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.704 (Fisher's exact test), Q value = 1

Table S1675. Gene #210: 'ZNF704 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
ZNF704 MUTATED	2	1	2
ZNF704 WILD-TYPE	38	24	17

'ZNF704 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.395 (Fisher's exact test), Q value = 1

Table S1676. Gene #210: 'ZNF704 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
ZNF704 MUTATED	0	3	2
ZNF704 WILD-TYPE	1	28	50

'ZNF704 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.793 (Fisher's exact test), Q value = 1

Table S1677. Gene #210: 'ZNF704 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
ZNF704 MUTATED	2	2	0	1
ZNF704 WILD-TYPE	29	18	11	21

'ZNF704 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1678. Gene #210: 'ZNF704 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
ZNF704 MUTATED	2	1	2
ZNF704 WILD-TYPE	35	15	29

'ZNF704 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.71 (Fisher's exact test), Q value = 1

Table S1679. Gene #210: 'ZNF704 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
ZNF704 MUTATED	2	2	1
ZNF704 WILD-TYPE	36	18	25

'ZNF704 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1680. Gene #210: 'ZNF704 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
ZNF704 MUTATED	2	1	2
ZNF704 WILD-TYPE	25	18	36

'SYNGAP1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.3 (Fisher's exact test), Q value = 1

Table S1681. Gene #211: 'SYNGAP1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
SYNGAP1 MUTATED	1	7	1
SYNGAP1 WILD-TYPE	23	38	20

'SYNGAP1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.673 (Fisher's exact test), Q value = 1

Table S1682. Gene #211: 'SYNGAP1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
SYNGAP1 MUTATED	2	5	2
SYNGAP1 WILD-TYPE	29	30	22

'SYNGAP1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.179 (Fisher's exact test), Q value = 1

Table S1683. Gene #211: 'SYNGAP1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
SYNGAP1 MUTATED	5	4	0
SYNGAP1 WILD-TYPE	35	21	19

'SYNGAP1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.096 (Fisher's exact test), Q value = 1

Table S1684. Gene #211: 'SYNGAP1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
SYNGAP1 MUTATED	1	2	6
SYNGAP1 WILD-TYPE	0	29	46

'SYNGAP1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.685 (Fisher's exact test), Q value = 1

Table S1685. Gene #211: 'SYNGAP1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
SYNGAP1 MUTATED	3	3	0	3
SYNGAP1 WILD-TYPE	28	17	11	19

'SYNGAP1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.903 (Fisher's exact test), Q value = 1

Table S1686. Gene #211: 'SYNGAP1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
SYNGAP1 MUTATED	4	1	4
SYNGAP1 WILD-TYPE	33	15	27

'SYNGAP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.352 (Fisher's exact test), Q value = 1

Table S1687. Gene #211: 'SYNGAP1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
SYNGAP1 MUTATED	3	4	2
SYNGAP1 WILD-TYPE	35	16	24

'SYNGAP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.742 (Fisher's exact test), Q value = 1

Table S1688. Gene #211: 'SYNGAP1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
SYNGAP1 MUTATED	4	2	3
SYNGAP1 WILD-TYPE	23	17	35

'FKBP15 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.716 (Fisher's exact test), Q value = 1

Table S1689. Gene #212: 'FKBP15 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
FKBP15 MUTATED	1	5	2
FKBP15 WILD-TYPE	23	40	19

'FKBP15 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.233 (Fisher's exact test), Q value = 1

Table S1690. Gene #212: 'FKBP15 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
FKBP15 MUTATED	1	3	4
FKBP15 WILD-TYPE	30	32	20

'FKBP15 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.182 (Fisher's exact test), Q value = 1

Table S1691. Gene #212: 'FKBP15 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
FKBP15 MUTATED	3	1	4
FKBP15 WILD-TYPE	37	24	15

'FKBP15 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0429 (Fisher's exact test), Q value = 1

Table S1692. Gene #212: 'FKBP15 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
FKBP15 MUTATED	1	4	3
FKBP15 WILD-TYPE	0	27	49

Figure S128. Get High-res Image Gene #212: 'FKBP15 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'FKBP15 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.221 (Fisher's exact test), Q value = 1

Table S1693. Gene #212: 'FKBP15 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
FKBP15 MUTATED	2	1	3	2
FKBP15 WILD-TYPE	29	19	8	20

'FKBP15 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0923 (Fisher's exact test), Q value = 1

Table S1694. Gene #212: 'FKBP15 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
FKBP15 MUTATED	2	4	2
FKBP15 WILD-TYPE	35	12	29

'FKBP15 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.565 (Fisher's exact test), Q value = 1

Table S1695. Gene #212: 'FKBP15 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
FKBP15 MUTATED	3	1	4
FKBP15 WILD-TYPE	35	19	22

'FKBP15 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.166 (Fisher's exact test), Q value = 1

Table S1696. Gene #212: 'FKBP15 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
FKBP15 MUTATED	2	4	2
FKBP15 WILD-TYPE	25	15	36

'CAMTA1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.218 (Fisher's exact test), Q value = 1

Table S1697. Gene #213: 'CAMTA1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
CAMTA1 MUTATED	5	3	2
CAMTA1 WILD-TYPE	19	42	19

'CAMTA1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.37 (Fisher's exact test), Q value = 1

Table S1698. Gene #213: 'CAMTA1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
CAMTA1 MUTATED	5	2	3
CAMTA1 WILD-TYPE	26	33	21

'CAMTA1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.25 (Fisher's exact test), Q value = 1

Table S1699. Gene #213: 'CAMTA1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
CAMTA1 MUTATED	7	1	2
CAMTA1 WILD-TYPE	33	24	17

'CAMTA1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.027 (Fisher's exact test), Q value = 1

Table S1700. Gene #213: 'CAMTA1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
CAMTA1 MUTATED	1	1	8
CAMTA1 WILD-TYPE	0	30	44

Figure S129. Get High-res Image Gene #213: 'CAMTA1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'CAMTA1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.569 (Fisher's exact test), Q value = 1

Table S1701. Gene #213: 'CAMTA1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
CAMTA1 MUTATED	5	1	2	2
CAMTA1 WILD-TYPE	26	19	9	20

'CAMTA1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.331 (Fisher's exact test), Q value = 1

Table S1702. Gene #213: 'CAMTA1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
CAMTA1 MUTATED	7	1	2
CAMTA1 WILD-TYPE	30	15	29

'CAMTA1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1703. Gene #213: 'CAMTA1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
CAMTA1 MUTATED	5	2	3
CAMTA1 WILD-TYPE	33	18	23

'CAMTA1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.309 (Fisher's exact test), Q value = 1

Table S1704. Gene #213: 'CAMTA1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
CAMTA1 MUTATED	2	1	7
CAMTA1 WILD-TYPE	25	18	31

'OXR1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0339 (Fisher's exact test), Q value = 1

Table S1705. Gene #214: 'OXR1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
OXR1 MUTATED	3	0	2
OXR1 WILD-TYPE	21	45	19

Figure S130. Get High-res Image Gene #214: 'OXR1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'OXR1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00483 (Fisher's exact test), Q value = 1

Table S1706. Gene #214: 'OXR1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
OXR1 MUTATED	5	0	0
OXR1 WILD-TYPE	26	35	24

Figure S131. Get High-res Image Gene #214: 'OXR1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'OXR1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0779 (Fisher's exact test), Q value = 1

Table S1707. Gene #214: 'OXR1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
OXR1 MUTATED	5	0	0
OXR1 WILD-TYPE	35	25	19

'OXR1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.202 (Fisher's exact test), Q value = 1

Table S1708. Gene #214: 'OXR1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
OXR1 MUTATED	0	0	5
OXR1 WILD-TYPE	1	31	47

'OXR1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.858 (Fisher's exact test), Q value = 1

Table S1709. Gene #214: 'OXR1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
OXR1 MUTATED	3	1	0	1
OXR1 WILD-TYPE	28	19	11	21

'OXR1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.267 (Fisher's exact test), Q value = 1

Table S1710. Gene #214: 'OXR1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
OXR1 MUTATED	4	0	1
OXR1 WILD-TYPE	33	16	30

'OXR1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.195 (Fisher's exact test), Q value = 1

Table S1711. Gene #214: 'OXR1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
OXR1 MUTATED	4	1	0
OXR1 WILD-TYPE	34	19	26

'OXR1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.298 (Fisher's exact test), Q value = 1

Table S1712. Gene #214: 'OXR1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
OXR1 MUTATED	1	0	4
OXR1 WILD-TYPE	26	19	34

'ZNF184 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1713. Gene #215: 'ZNF184 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
ZNF184 MUTATED	2	5	2
ZNF184 WILD-TYPE	22	40	19

'ZNF184 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1714. Gene #215: 'ZNF184 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
ZNF184 MUTATED	3	4	2
ZNF184 WILD-TYPE	28	31	22

'ZNF184 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1715. Gene #215: 'ZNF184 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
ZNF184 MUTATED	4	3	2
ZNF184 WILD-TYPE	36	22	17

'ZNF184 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.128 (Fisher's exact test), Q value = 1

Table S1716. Gene #215: 'ZNF184 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
ZNF184 MUTATED	1	3	5
ZNF184 WILD-TYPE	0	28	47

'ZNF184 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.455 (Fisher's exact test), Q value = 1

Table S1717. Gene #215: 'ZNF184 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
ZNF184 MUTATED	3	4	1	1
ZNF184 WILD-TYPE	28	16	10	21

'ZNF184 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.582 (Fisher's exact test), Q value = 1

Table S1718. Gene #215: 'ZNF184 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
ZNF184 MUTATED	3	1	5
ZNF184 WILD-TYPE	34	15	26

'ZNF184 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.254 (Fisher's exact test), Q value = 1

Table S1719. Gene #215: 'ZNF184 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
ZNF184 MUTATED	4	4	1
ZNF184 WILD-TYPE	34	16	25

'ZNF184 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.388 (Fisher's exact test), Q value = 1

Table S1720. Gene #215: 'ZNF184 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
ZNF184 MUTATED	5	1	3
ZNF184 WILD-TYPE	22	18	35

'ACBD3 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1721. Gene #216: 'ACBD3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
ACBD3 MUTATED	1	3	1
ACBD3 WILD-TYPE	23	42	20

'ACBD3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.849 (Fisher's exact test), Q value = 1

Table S1722. Gene #216: 'ACBD3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
ACBD3 MUTATED	1	2	2
ACBD3 WILD-TYPE	30	33	22

'ACBD3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.704 (Fisher's exact test), Q value = 1

Table S1723. Gene #216: 'ACBD3 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
ACBD3 MUTATED	2	1	2
ACBD3 WILD-TYPE	38	24	17

'ACBD3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0141 (Fisher's exact test), Q value = 1

Table S1724. Gene #216: 'ACBD3 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
ACBD3 MUTATED	1	3	1
ACBD3 WILD-TYPE	0	28	51

Figure S132. Get High-res Image Gene #216: 'ACBD3 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'ACBD3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.679 (Fisher's exact test), Q value = 1

Table S1725. Gene #216: 'ACBD3 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
ACBD3 MUTATED	1	2	1	1
ACBD3 WILD-TYPE	30	18	10	21

'ACBD3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.501 (Fisher's exact test), Q value = 1

Table S1726. Gene #216: 'ACBD3 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
ACBD3 MUTATED	1	1	3
ACBD3 WILD-TYPE	36	15	28

'ACBD3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.509 (Fisher's exact test), Q value = 1

Table S1727. Gene #216: 'ACBD3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
ACBD3 MUTATED	1	2	2
ACBD3 WILD-TYPE	37	18	24

'ACBD3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.433 (Fisher's exact test), Q value = 1

Table S1728. Gene #216: 'ACBD3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
ACBD3 MUTATED	3	1	1
ACBD3 WILD-TYPE	24	18	37

'TOB1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.805 (Fisher's exact test), Q value = 1

Table S1729. Gene #217: 'TOB1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
TOB1 MUTATED	1	3	0
TOB1 WILD-TYPE	23	42	21

'TOB1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.674 (Fisher's exact test), Q value = 1

Table S1730. Gene #217: 'TOB1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
TOB1 MUTATED	1	1	2
TOB1 WILD-TYPE	30	34	22

'TOB1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.68 (Fisher's exact test), Q value = 1

Table S1731. Gene #217: 'TOB1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
TOB1 MUTATED	2	2	0
TOB1 WILD-TYPE	38	23	19

'TOB1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.325 (Fisher's exact test), Q value = 1

Table S1732. Gene #217: 'TOB1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
TOB1 MUTATED	0	0	4
TOB1 WILD-TYPE	1	31	48

'TOB1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.742 (Fisher's exact test), Q value = 1

Table S1733. Gene #217: 'TOB1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
TOB1 MUTATED	1	2	0	1
TOB1 WILD-TYPE	30	18	11	21

'TOB1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.829 (Fisher's exact test), Q value = 1

Table S1734. Gene #217: 'TOB1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
TOB1 MUTATED	2	0	2
TOB1 WILD-TYPE	35	16	29

'TOB1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.266 (Fisher's exact test), Q value = 1

Table S1735. Gene #217: 'TOB1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
TOB1 MUTATED	2	2	0
TOB1 WILD-TYPE	36	18	26

'TOB1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.682 (Fisher's exact test), Q value = 1

Table S1736. Gene #217: 'TOB1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
TOB1 MUTATED	2	0	2
TOB1 WILD-TYPE	25	19	36

'OR10Z1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.747 (Fisher's exact test), Q value = 1

Table S1737. Gene #218: 'OR10Z1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
OR10Z1 MUTATED	1	3	2
OR10Z1 WILD-TYPE	23	42	19

'OR10Z1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.435 (Fisher's exact test), Q value = 1

Table S1738. Gene #218: 'OR10Z1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
OR10Z1 MUTATED	1	2	3
OR10Z1 WILD-TYPE	30	33	21

'OR10Z1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.755 (Fisher's exact test), Q value = 1

Table S1739. Gene #218: 'OR10Z1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
OR10Z1 MUTATED	3	1	2
OR10Z1 WILD-TYPE	37	24	17

'OR10Z1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0273 (Fisher's exact test), Q value = 1

Table S1740. Gene #218: 'OR10Z1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
OR10Z1 MUTATED	1	3	2
OR10Z1 WILD-TYPE	0	28	50

Figure S133. Get High-res Image Gene #218: 'OR10Z1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'OR10Z1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1741. Gene #218: 'OR10Z1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
OR10Z1 MUTATED	2	1	1	2
OR10Z1 WILD-TYPE	29	19	10	20

'OR10Z1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.74 (Fisher's exact test), Q value = 1

Table S1742. Gene #218: 'OR10Z1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
OR10Z1 MUTATED	2	2	2
OR10Z1 WILD-TYPE	35	14	29

'OR10Z1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.561 (Fisher's exact test), Q value = 1

Table S1743. Gene #218: 'OR10Z1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
OR10Z1 MUTATED	2	1	3
OR10Z1 WILD-TYPE	36	19	23

'OR10Z1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.862 (Fisher's exact test), Q value = 1

Table S1744. Gene #218: 'OR10Z1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
OR10Z1 MUTATED	2	2	2
OR10Z1 WILD-TYPE	25	17	36

'BEGAIN MUTATION STATUS' versus 'CN_CNMF'

P value = 0.306 (Fisher's exact test), Q value = 1

Table S1745. Gene #219: 'BEGAIN MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
BEGAIN MUTATED	1	5	0
BEGAIN WILD-TYPE	23	40	21

'BEGAIN MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1746. Gene #219: 'BEGAIN MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
BEGAIN MUTATED	2	2	2
BEGAIN WILD-TYPE	29	33	22

'BEGAIN MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.219 (Fisher's exact test), Q value = 1

Table S1747. Gene #219: 'BEGAIN MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
BEGAIN MUTATED	4	0	2
BEGAIN WILD-TYPE	36	25	17

'BEGAIN MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.095 (Fisher's exact test), Q value = 1

Table S1748. Gene #219: 'BEGAIN MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
BEGAIN MUTATED	1	2	3
BEGAIN WILD-TYPE	0	29	49

'BEGAIN MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.688 (Fisher's exact test), Q value = 1

Table S1749. Gene #219: 'BEGAIN MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
BEGAIN MUTATED	1	2	1	2
BEGAIN WILD-TYPE	30	18	10	20

'BEGAIN MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.858 (Fisher's exact test), Q value = 1

Table S1750. Gene #219: 'BEGAIN MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
BEGAIN MUTATED	2	1	3
BEGAIN WILD-TYPE	35	15	28

'BEGAIN MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.865 (Fisher's exact test), Q value = 1

Table S1751. Gene #219: 'BEGAIN MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
BEGAIN MUTATED	2	2	2
BEGAIN WILD-TYPE	36	18	24

'BEGAIN MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.862 (Fisher's exact test), Q value = 1

Table S1752. Gene #219: 'BEGAIN MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
BEGAIN MUTATED	2	2	2
BEGAIN WILD-TYPE	25	17	36

'TNKS2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.212 (Fisher's exact test), Q value = 1

Table S1753. Gene #220: 'TNKS2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
TNKS2 MUTATED	0	5	1
TNKS2 WILD-TYPE	24	40	20

'TNKS2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.694 (Fisher's exact test), Q value = 1

Table S1754. Gene #220: 'TNKS2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
TNKS2 MUTATED	2	4	1
TNKS2 WILD-TYPE	29	31	23

'TNKS2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1755. Gene #220: 'TNKS2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
TNKS2 MUTATED	4	2	1
TNKS2 WILD-TYPE	36	23	18

'TNKS2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0646 (Fisher's exact test), Q value = 1

Table S1756. Gene #220: 'TNKS2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
TNKS2 MUTATED	1	3	3
TNKS2 WILD-TYPE	0	28	49

'TNKS2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.621 (Fisher's exact test), Q value = 1

Table S1757. Gene #220: 'TNKS2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
TNKS2 MUTATED	2	3	1	1
TNKS2 WILD-TYPE	29	17	10	21

'TNKS2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.593 (Fisher's exact test), Q value = 1

Table S1758. Gene #220: 'TNKS2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
TNKS2 MUTATED	2	1	4
TNKS2 WILD-TYPE	35	15	27

'TNKS2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.682 (Fisher's exact test), Q value = 1

Table S1759. Gene #220: 'TNKS2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
TNKS2 MUTATED	4	2	1
TNKS2 WILD-TYPE	34	18	25

'TNKS2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.78 (Fisher's exact test), Q value = 1

Table S1760. Gene #220: 'TNKS2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
TNKS2 MUTATED	3	1	3
TNKS2 WILD-TYPE	24	18	35

'SNIP1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.356 (Fisher's exact test), Q value = 1

Table S1761. Gene #221: 'SNIP1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
SNIP1 MUTATED	0	4	2
SNIP1 WILD-TYPE	24	41	19

'SNIP1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.657 (Fisher's exact test), Q value = 1

Table S1762. Gene #221: 'SNIP1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
SNIP1 MUTATED	1	3	2
SNIP1 WILD-TYPE	30	32	22

'SNIP1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0737 (Fisher's exact test), Q value = 1

Table S1763. Gene #221: 'SNIP1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
SNIP1 MUTATED	3	0	3
SNIP1 WILD-TYPE	37	25	16

'SNIP1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0273 (Fisher's exact test), Q value = 1

Table S1764. Gene #221: 'SNIP1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
SNIP1 MUTATED	1	3	2
SNIP1 WILD-TYPE	0	28	50

Figure S134. Get High-res Image Gene #221: 'SNIP1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'SNIP1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.426 (Fisher's exact test), Q value = 1

Table S1765. Gene #221: 'SNIP1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
SNIP1 MUTATED	1	3	1	1
SNIP1 WILD-TYPE	30	17	10	21

'SNIP1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.284 (Fisher's exact test), Q value = 1

Table S1766. Gene #221: 'SNIP1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
SNIP1 MUTATED	1	2	3
SNIP1 WILD-TYPE	36	14	28

'SNIP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.261 (Fisher's exact test), Q value = 1

Table S1767. Gene #221: 'SNIP1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
SNIP1 MUTATED	1	3	2
SNIP1 WILD-TYPE	37	17	24

'SNIP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.348 (Fisher's exact test), Q value = 1

Table S1768. Gene #221: 'SNIP1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
SNIP1 MUTATED	3	2	1
SNIP1 WILD-TYPE	24	17	37

'FAM134A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.707 (Fisher's exact test), Q value = 1

Table S1769. Gene #222: 'FAM134A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
FAM134A MUTATED	1	2	2
FAM134A WILD-TYPE	23	43	19

'FAM134A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.849 (Fisher's exact test), Q value = 1

Table S1770. Gene #222: 'FAM134A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
FAM134A MUTATED	1	2	2
FAM134A WILD-TYPE	30	33	22

'FAM134A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1771. Gene #222: 'FAM134A MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
FAM134A MUTATED	3	1	1
FAM134A WILD-TYPE	37	24	18

'FAM134A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.667 (Fisher's exact test), Q value = 1

Table S1772. Gene #222: 'FAM134A MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
FAM134A MUTATED	0	1	4
FAM134A WILD-TYPE	1	30	48

'FAM134A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.927 (Fisher's exact test), Q value = 1

Table S1773. Gene #222: 'FAM134A MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
FAM134A MUTATED	2	1	0	2
FAM134A WILD-TYPE	29	19	11	20

'FAM134A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.839 (Fisher's exact test), Q value = 1

Table S1774. Gene #222: 'FAM134A MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
FAM134A MUTATED	3	1	1
FAM134A WILD-TYPE	34	15	30

'FAM134A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.852 (Fisher's exact test), Q value = 1

Table S1775. Gene #222: 'FAM134A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
FAM134A MUTATED	3	1	1
FAM134A WILD-TYPE	35	19	25

'FAM134A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.848 (Fisher's exact test), Q value = 1

Table S1776. Gene #222: 'FAM134A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
FAM134A MUTATED	1	1	3
FAM134A WILD-TYPE	26	18	35

'SPRR4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.605 (Fisher's exact test), Q value = 1

Table S1777. Gene #223: 'SPRR4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
SPRR4 MUTATED	0	2	1
SPRR4 WILD-TYPE	24	43	20

'SPRR4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.778 (Fisher's exact test), Q value = 1

Table S1778. Gene #223: 'SPRR4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
SPRR4 MUTATED	1	2	0
SPRR4 WILD-TYPE	30	33	24

'SPRR4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.211 (Fisher's exact test), Q value = 1

Table S1779. Gene #223: 'SPRR4 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
SPRR4 MUTATED	1	0	2
SPRR4 WILD-TYPE	39	25	17

'SPRR4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.569 (Fisher's exact test), Q value = 1

Table S1780. Gene #223: 'SPRR4 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
SPRR4 MUTATED	0	2	1
SPRR4 WILD-TYPE	1	29	51

'SPRR4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.573 (Fisher's exact test), Q value = 1

Table S1781. Gene #223: 'SPRR4 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
SPRR4 MUTATED	1	0	0	2
SPRR4 WILD-TYPE	30	20	11	20

'SPRR4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0915 (Fisher's exact test), Q value = 1

Table S1782. Gene #223: 'SPRR4 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
SPRR4 MUTATED	1	2	0
SPRR4 WILD-TYPE	36	14	31

'SPRR4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.453 (Fisher's exact test), Q value = 1

Table S1783. Gene #223: 'SPRR4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
SPRR4 MUTATED	1	0	2
SPRR4 WILD-TYPE	37	20	24

'SPRR4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.158 (Fisher's exact test), Q value = 1

Table S1784. Gene #223: 'SPRR4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
SPRR4 MUTATED	0	2	1
SPRR4 WILD-TYPE	27	17	37

'RTKN2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.473 (Fisher's exact test), Q value = 1

Table S1785. Gene #224: 'RTKN2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
RTKN2 MUTATED	2	4	0
RTKN2 WILD-TYPE	22	41	21

'RTKN2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.567 (Fisher's exact test), Q value = 1

Table S1786. Gene #224: 'RTKN2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
RTKN2 MUTATED	3	1	2
RTKN2 WILD-TYPE	28	34	22

'RTKN2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.219 (Fisher's exact test), Q value = 1

Table S1787. Gene #224: 'RTKN2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
RTKN2 MUTATED	4	0	2
RTKN2 WILD-TYPE	36	25	17

'RTKN2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1788. Gene #224: 'RTKN2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
RTKN2 MUTATED	0	2	4
RTKN2 WILD-TYPE	1	29	48

'RTKN2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.385 (Fisher's exact test), Q value = 1

Table S1789. Gene #224: 'RTKN2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
RTKN2 MUTATED	2	0	1	3
RTKN2 WILD-TYPE	29	20	10	19

'RTKN2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1790. Gene #224: 'RTKN2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
RTKN2 MUTATED	3	1	2
RTKN2 WILD-TYPE	34	15	29

'RTKN2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.412 (Fisher's exact test), Q value = 1

Table S1791. Gene #224: 'RTKN2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
RTKN2 MUTATED	3	0	3
RTKN2 WILD-TYPE	35	20	23

'RTKN2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.662 (Fisher's exact test), Q value = 1

Table S1792. Gene #224: 'RTKN2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
RTKN2 MUTATED	1	2	3
RTKN2 WILD-TYPE	26	17	35

'OR2T33 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0667 (Fisher's exact test), Q value = 1

Table S1793. Gene #225: 'OR2T33 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
OR2T33 MUTATED	4	1	1
OR2T33 WILD-TYPE	20	44	20

'OR2T33 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0692 (Fisher's exact test), Q value = 1

Table S1794. Gene #225: 'OR2T33 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
OR2T33 MUTATED	4	0	2
OR2T33 WILD-TYPE	27	35	22

'OR2T33 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.299 (Fisher's exact test), Q value = 1

Table S1795. Gene #225: 'OR2T33 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
OR2T33 MUTATED	5	1	0
OR2T33 WILD-TYPE	35	24	19

'OR2T33 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0126 (Fisher's exact test), Q value = 1

Table S1796. Gene #225: 'OR2T33 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
OR2T33 MUTATED	1	0	5
OR2T33 WILD-TYPE	0	31	47

Figure S135. Get High-res Image Gene #225: 'OR2T33 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'OR2T33 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.258 (Fisher's exact test), Q value = 1

Table S1797. Gene #225: 'OR2T33 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
OR2T33 MUTATED	4	2	0	0
OR2T33 WILD-TYPE	27	18	11	22

'OR2T33 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.649 (Fisher's exact test), Q value = 1

Table S1798. Gene #225: 'OR2T33 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
OR2T33 MUTATED	3	0	3
OR2T33 WILD-TYPE	34	16	28

'OR2T33 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.226 (Fisher's exact test), Q value = 1

Table S1799. Gene #225: 'OR2T33 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
OR2T33 MUTATED	4	2	0
OR2T33 WILD-TYPE	34	18	26

'OR2T33 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.473 (Fisher's exact test), Q value = 1

Table S1800. Gene #225: 'OR2T33 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
OR2T33 MUTATED	2	0	4
OR2T33 WILD-TYPE	25	19	34

'OR5A1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.636 (Fisher's exact test), Q value = 1

Table S1801. Gene #226: 'OR5A1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
OR5A1 MUTATED	3	3	2
OR5A1 WILD-TYPE	21	42	19

'OR5A1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.586 (Fisher's exact test), Q value = 1

Table S1802. Gene #226: 'OR5A1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
OR5A1 MUTATED	4	2	2
OR5A1 WILD-TYPE	27	33	22

'OR5A1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1803. Gene #226: 'OR5A1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
OR5A1 MUTATED	4	2	2
OR5A1 WILD-TYPE	36	23	17

'OR5A1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0429 (Fisher's exact test), Q value = 1

Table S1804. Gene #226: 'OR5A1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
OR5A1 MUTATED	1	4	3
OR5A1 WILD-TYPE	0	27	49

Figure S136. Get High-res Image Gene #226: 'OR5A1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'OR5A1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.184 (Fisher's exact test), Q value = 1

Table S1805. Gene #226: 'OR5A1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
OR5A1 MUTATED	3	3	2	0
OR5A1 WILD-TYPE	28	17	9	22

'OR5A1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.795 (Fisher's exact test), Q value = 1

Table S1806. Gene #226: 'OR5A1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
OR5A1 MUTATED	3	1	4
OR5A1 WILD-TYPE	34	15	27

'OR5A1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.637 (Fisher's exact test), Q value = 1

Table S1807. Gene #226: 'OR5A1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
OR5A1 MUTATED	3	3	2
OR5A1 WILD-TYPE	35	17	24

'OR5A1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.565 (Fisher's exact test), Q value = 1

Table S1808. Gene #226: 'OR5A1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
OR5A1 MUTATED	4	1	3
OR5A1 WILD-TYPE	23	18	35

'RBMXL1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.805 (Fisher's exact test), Q value = 1

Table S1809. Gene #227: 'RBMXL1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
RBMXL1 MUTATED	1	3	0
RBMXL1 WILD-TYPE	23	42	21

'RBMXL1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.557 (Fisher's exact test), Q value = 1

Table S1810. Gene #227: 'RBMXL1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
RBMXL1 MUTATED	2	2	0
RBMXL1 WILD-TYPE	29	33	24

'RBMXL1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.559 (Fisher's exact test), Q value = 1

Table S1811. Gene #227: 'RBMXL1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
RBMXL1 MUTATED	1	2	1
RBMXL1 WILD-TYPE	39	23	18

'RBMXL1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.645 (Fisher's exact test), Q value = 1

Table S1812. Gene #227: 'RBMXL1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
RBMXL1 MUTATED	0	2	2
RBMXL1 WILD-TYPE	1	29	50

'RBMXL1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.561 (Fisher's exact test), Q value = 1

Table S1813. Gene #227: 'RBMXL1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
RBMXL1 MUTATED	2	1	1	0
RBMXL1 WILD-TYPE	29	19	10	22

'RBMXL1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.037 (Fisher's exact test), Q value = 1

Table S1814. Gene #227: 'RBMXL1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
RBMXL1 MUTATED	0	0	4
RBMXL1 WILD-TYPE	37	16	27

Figure S137. Get High-res Image Gene #227: 'RBMXL1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'RBMXL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1815. Gene #227: 'RBMXL1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
RBMXL1 MUTATED	2	1	1
RBMXL1 WILD-TYPE	36	19	25

'RBMXL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.682 (Fisher's exact test), Q value = 1

Table S1816. Gene #227: 'RBMXL1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
RBMXL1 MUTATED	2	0	2
RBMXL1 WILD-TYPE	25	19	36

'CD93 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1817. Gene #228: 'CD93 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
CD93 MUTATED	2	4	2
CD93 WILD-TYPE	22	41	19

'CD93 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0726 (Fisher's exact test), Q value = 1

Table S1818. Gene #228: 'CD93 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
CD93 MUTATED	2	1	5
CD93 WILD-TYPE	29	34	19

'CD93 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.16 (Fisher's exact test), Q value = 1

Table S1819. Gene #228: 'CD93 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
CD93 MUTATED	2	2	4
CD93 WILD-TYPE	38	23	15

'CD93 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.11 (Fisher's exact test), Q value = 1

Table S1820. Gene #228: 'CD93 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
CD93 MUTATED	1	2	5
CD93 WILD-TYPE	0	29	47

'CD93 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.456 (Fisher's exact test), Q value = 1

Table S1821. Gene #228: 'CD93 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
CD93 MUTATED	2	1	1	4
CD93 WILD-TYPE	29	19	10	18

'CD93 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.891 (Fisher's exact test), Q value = 1

Table S1822. Gene #228: 'CD93 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
CD93 MUTATED	3	2	3
CD93 WILD-TYPE	34	14	28

'CD93 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.353 (Fisher's exact test), Q value = 1

Table S1823. Gene #228: 'CD93 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
CD93 MUTATED	2	2	4
CD93 WILD-TYPE	36	18	22

'CD93 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.898 (Fisher's exact test), Q value = 1

Table S1824. Gene #228: 'CD93 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
CD93 MUTATED	3	2	3
CD93 WILD-TYPE	24	17	35

'HVCN1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.805 (Fisher's exact test), Q value = 1

Table S1825. Gene #229: 'HVCN1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
HVCN1 MUTATED	1	3	0
HVCN1 WILD-TYPE	23	42	21

'HVCN1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1826. Gene #229: 'HVCN1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
HVCN1 MUTATED	1	2	1
HVCN1 WILD-TYPE	30	33	23

'HVCN1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00201 (Fisher's exact test), Q value = 1

Table S1827. Gene #229: 'HVCN1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
HVCN1 MUTATED	0	0	4
HVCN1 WILD-TYPE	40	25	15

Figure S138. Get High-res Image Gene #229: 'HVCN1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

'HVCN1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.185 (Fisher's exact test), Q value = 1

Table S1828. Gene #229: 'HVCN1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
HVCN1 MUTATED	0	3	1
HVCN1 WILD-TYPE	1	28	51

'HVCN1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0312 (Fisher's exact test), Q value = 1

Table S1829. Gene #229: 'HVCN1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
HVCN1 MUTATED	0	0	2	2
HVCN1 WILD-TYPE	31	20	9	20

Figure S139. Get High-res Image Gene #229: 'HVCN1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

'HVCN1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0207 (Fisher's exact test), Q value = 1

Table S1830. Gene #229: 'HVCN1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
HVCN1 MUTATED	1	3	0
HVCN1 WILD-TYPE	36	13	31

Figure S140. Get High-res Image Gene #229: 'HVCN1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'HVCN1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0103 (Fisher's exact test), Q value = 1

Table S1831. Gene #229: 'HVCN1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
HVCN1 MUTATED	0	0	4
HVCN1 WILD-TYPE	38	20	22

Figure S141. Get High-res Image Gene #229: 'HVCN1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

'HVCN1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0437 (Fisher's exact test), Q value = 1

Table S1832. Gene #229: 'HVCN1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
HVCN1 MUTATED	0	3	1
HVCN1 WILD-TYPE	27	16	37

Figure S142. Get High-res Image Gene #229: 'HVCN1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

'OTX1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.674 (Fisher's exact test), Q value = 1

Table S1833. Gene #230: 'OTX1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
OTX1 MUTATED	1	5	1
OTX1 WILD-TYPE	23	40	20

'OTX1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.616 (Fisher's exact test), Q value = 1

Table S1834. Gene #230: 'OTX1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
OTX1 MUTATED	2	2	3
OTX1 WILD-TYPE	29	33	21

'OTX1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1835. Gene #230: 'OTX1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
OTX1 MUTATED	4	2	1
OTX1 WILD-TYPE	36	23	18

'OTX1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0426 (Fisher's exact test), Q value = 1

Table S1836. Gene #230: 'OTX1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
OTX1 MUTATED	1	1	5
OTX1 WILD-TYPE	0	30	47

Figure S143. Get High-res Image Gene #230: 'OTX1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'OTX1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.9 (Fisher's exact test), Q value = 1

Table S1837. Gene #230: 'OTX1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
OTX1 MUTATED	3	2	1	1
OTX1 WILD-TYPE	28	18	10	21

'OTX1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.399 (Fisher's exact test), Q value = 1

Table S1838. Gene #230: 'OTX1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
OTX1 MUTATED	3	0	4
OTX1 WILD-TYPE	34	16	27

'OTX1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.682 (Fisher's exact test), Q value = 1

Table S1839. Gene #230: 'OTX1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
OTX1 MUTATED	4	2	1
OTX1 WILD-TYPE	34	18	25

'OTX1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.226 (Fisher's exact test), Q value = 1

Table S1840. Gene #230: 'OTX1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
OTX1 MUTATED	4	0	3
OTX1 WILD-TYPE	23	19	35

'PRKCH MUTATION STATUS' versus 'CN_CNMF'

P value = 0.423 (Fisher's exact test), Q value = 1

Table S1841. Gene #231: 'PRKCH MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
PRKCH MUTATED	0	4	1
PRKCH WILD-TYPE	24	41	20

'PRKCH MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.119 (Fisher's exact test), Q value = 1

Table S1842. Gene #231: 'PRKCH MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
PRKCH MUTATED	0	2	3
PRKCH WILD-TYPE	31	33	21

'PRKCH MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.426 (Fisher's exact test), Q value = 1

Table S1843. Gene #231: 'PRKCH MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
PRKCH MUTATED	1	2	2
PRKCH WILD-TYPE	39	23	17

'PRKCH MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0141 (Fisher's exact test), Q value = 1

Table S1844. Gene #231: 'PRKCH MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
PRKCH MUTATED	1	3	1
PRKCH WILD-TYPE	0	28	51

Figure S144. Get High-res Image Gene #231: 'PRKCH MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'PRKCH MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0924 (Fisher's exact test), Q value = 1

Table S1845. Gene #231: 'PRKCH MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
PRKCH MUTATED	0	3	1	1
PRKCH WILD-TYPE	31	17	10	21

'PRKCH MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0781 (Fisher's exact test), Q value = 1

Table S1846. Gene #231: 'PRKCH MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
PRKCH MUTATED	0	2	3
PRKCH WILD-TYPE	37	14	28

'PRKCH MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1847. Gene #231: 'PRKCH MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
PRKCH MUTATED	2	1	2
PRKCH WILD-TYPE	36	19	24

'PRKCH MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0492 (Fisher's exact test), Q value = 1

Table S1848. Gene #231: 'PRKCH MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
PRKCH MUTATED	3	2	0
PRKCH WILD-TYPE	24	17	38

Figure S145. Get High-res Image Gene #231: 'PRKCH MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

'LIMD1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.674 (Fisher's exact test), Q value = 1

Table S1849. Gene #232: 'LIMD1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
LIMD1 MUTATED	1	5	1
LIMD1 WILD-TYPE	23	40	20

'LIMD1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.421 (Fisher's exact test), Q value = 1

Table S1850. Gene #232: 'LIMD1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
LIMD1 MUTATED	1	3	3
LIMD1 WILD-TYPE	30	32	21

'LIMD1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.455 (Fisher's exact test), Q value = 1

Table S1851. Gene #232: 'LIMD1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
LIMD1 MUTATED	3	1	3
LIMD1 WILD-TYPE	37	24	16

'LIMD1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0646 (Fisher's exact test), Q value = 1

Table S1852. Gene #232: 'LIMD1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
LIMD1 MUTATED	1	3	3
LIMD1 WILD-TYPE	0	28	49

'LIMD1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.279 (Fisher's exact test), Q value = 1

Table S1853. Gene #232: 'LIMD1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
LIMD1 MUTATED	1	1	1	4
LIMD1 WILD-TYPE	30	19	10	18

'LIMD1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.253 (Fisher's exact test), Q value = 1

Table S1854. Gene #232: 'LIMD1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
LIMD1 MUTATED	2	3	2
LIMD1 WILD-TYPE	35	13	29

'LIMD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.602 (Fisher's exact test), Q value = 1

Table S1855. Gene #232: 'LIMD1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
LIMD1 MUTATED	2	2	3
LIMD1 WILD-TYPE	36	18	23

'LIMD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.466 (Fisher's exact test), Q value = 1

Table S1856. Gene #232: 'LIMD1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
LIMD1 MUTATED	2	3	2
LIMD1 WILD-TYPE	25	16	36

'C15ORF52 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.671 (Fisher's exact test), Q value = 1

Table S1857. Gene #233: 'C15ORF52 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
C15ORF52 MUTATED	0	3	1
C15ORF52 WILD-TYPE	24	42	20

'C15ORF52 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.243 (Fisher's exact test), Q value = 1

Table S1858. Gene #233: 'C15ORF52 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
C15ORF52 MUTATED	0	3	1
C15ORF52 WILD-TYPE	31	32	23

'C15ORF52 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.559 (Fisher's exact test), Q value = 1

Table S1859. Gene #233: 'C15ORF52 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
C15ORF52 MUTATED	1	2	1
C15ORF52 WILD-TYPE	39	23	18

'C15ORF52 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.185 (Fisher's exact test), Q value = 1

Table S1860. Gene #233: 'C15ORF52 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
C15ORF52 MUTATED	0	3	1
C15ORF52 WILD-TYPE	1	28	51

'C15ORF52 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.213 (Fisher's exact test), Q value = 1

Table S1861. Gene #233: 'C15ORF52 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
C15ORF52 MUTATED	0	2	1	1
C15ORF52 WILD-TYPE	31	18	10	21

'C15ORF52 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.668 (Fisher's exact test), Q value = 1

Table S1862. Gene #233: 'C15ORF52 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
C15ORF52 MUTATED	1	1	2
C15ORF52 WILD-TYPE	36	15	29

'C15ORF52 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1863. Gene #233: 'C15ORF52 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
C15ORF52 MUTATED	2	1	1
C15ORF52 WILD-TYPE	36	19	25

'C15ORF52 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.813 (Fisher's exact test), Q value = 1

Table S1864. Gene #233: 'C15ORF52 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
C15ORF52 MUTATED	2	1	1
C15ORF52 WILD-TYPE	25	18	37

'ZNF552 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.81 (Fisher's exact test), Q value = 1

Table S1865. Gene #234: 'ZNF552 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
ZNF552 MUTATED	2	4	3
ZNF552 WILD-TYPE	22	41	18

'ZNF552 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1866. Gene #234: 'ZNF552 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
ZNF552 MUTATED	3	4	3
ZNF552 WILD-TYPE	28	31	21

'ZNF552 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.832 (Fisher's exact test), Q value = 1

Table S1867. Gene #234: 'ZNF552 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
ZNF552 MUTATED	4	4	2
ZNF552 WILD-TYPE	36	21	17

'ZNF552 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0186 (Fisher's exact test), Q value = 1

Table S1868. Gene #234: 'ZNF552 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
ZNF552 MUTATED	1	6	3
ZNF552 WILD-TYPE	0	25	49

Figure S146. Get High-res Image Gene #234: 'ZNF552 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'ZNF552 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0569 (Fisher's exact test), Q value = 1

Table S1869. Gene #234: 'ZNF552 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
ZNF552 MUTATED	2	6	1	1
ZNF552 WILD-TYPE	29	14	10	21

'ZNF552 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.204 (Fisher's exact test), Q value = 1

Table S1870. Gene #234: 'ZNF552 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
ZNF552 MUTATED	2	2	6
ZNF552 WILD-TYPE	35	14	25

'ZNF552 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.171 (Fisher's exact test), Q value = 1

Table S1871. Gene #234: 'ZNF552 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
ZNF552 MUTATED	3	5	2
ZNF552 WILD-TYPE	35	15	24

'ZNF552 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.112 (Fisher's exact test), Q value = 1

Table S1872. Gene #234: 'ZNF552 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
ZNF552 MUTATED	6	2	2
ZNF552 WILD-TYPE	21	17	36

'TFDP2 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1873. Gene #235: 'TFDP2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
TFDP2 MUTATED	1	2	0
TFDP2 WILD-TYPE	23	43	21

'TFDP2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.778 (Fisher's exact test), Q value = 1

Table S1874. Gene #235: 'TFDP2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
TFDP2 MUTATED	1	2	0
TFDP2 WILD-TYPE	30	33	24

'TFDP2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.795 (Fisher's exact test), Q value = 1

Table S1875. Gene #235: 'TFDP2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
TFDP2 MUTATED	1	1	1
TFDP2 WILD-TYPE	39	24	18

'TFDP2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.569 (Fisher's exact test), Q value = 1

Table S1876. Gene #235: 'TFDP2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
TFDP2 MUTATED	0	2	1
TFDP2 WILD-TYPE	1	29	51

'TFDP2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.498 (Fisher's exact test), Q value = 1

Table S1877. Gene #235: 'TFDP2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
TFDP2 MUTATED	1	1	1	0
TFDP2 WILD-TYPE	30	19	10	22

'TFDP2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.783 (Fisher's exact test), Q value = 1

Table S1878. Gene #235: 'TFDP2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
TFDP2 MUTATED	1	1	1
TFDP2 WILD-TYPE	36	15	30

'TFDP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1879. Gene #235: 'TFDP2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
TFDP2 MUTATED	1	1	1
TFDP2 WILD-TYPE	37	19	25

'TFDP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1880. Gene #235: 'TFDP2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
TFDP2 MUTATED	1	1	1
TFDP2 WILD-TYPE	26	18	37

'CACNA1D MUTATION STATUS' versus 'CN_CNMF'

P value = 0.637 (Fisher's exact test), Q value = 1

Table S1881. Gene #236: 'CACNA1D MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
CACNA1D MUTATED	4	4	3
CACNA1D WILD-TYPE	20	41	18

'CACNA1D MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0933 (Fisher's exact test), Q value = 1

Table S1882. Gene #236: 'CACNA1D MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
CACNA1D MUTATED	3	2	6
CACNA1D WILD-TYPE	28	33	18

'CACNA1D MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.703 (Fisher's exact test), Q value = 1

Table S1883. Gene #236: 'CACNA1D MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
CACNA1D MUTATED	6	2	3
CACNA1D WILD-TYPE	34	23	16

'CACNA1D MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0545 (Fisher's exact test), Q value = 1

Table S1884. Gene #236: 'CACNA1D MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
CACNA1D MUTATED	1	2	8
CACNA1D WILD-TYPE	0	29	44

'CACNA1D MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.641 (Fisher's exact test), Q value = 1

Table S1885. Gene #236: 'CACNA1D MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
CACNA1D MUTATED	5	1	1	4
CACNA1D WILD-TYPE	26	19	10	18

'CACNA1D MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.839 (Fisher's exact test), Q value = 1

Table S1886. Gene #236: 'CACNA1D MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
CACNA1D MUTATED	6	2	3
CACNA1D WILD-TYPE	31	14	28

'CACNA1D MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.92 (Fisher's exact test), Q value = 1

Table S1887. Gene #236: 'CACNA1D MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
CACNA1D MUTATED	5	2	4
CACNA1D WILD-TYPE	33	18	22

'CACNA1D MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.842 (Fisher's exact test), Q value = 1

Table S1888. Gene #236: 'CACNA1D MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
CACNA1D MUTATED	3	2	6
CACNA1D WILD-TYPE	24	17	32

'SEC31A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.7 (Fisher's exact test), Q value = 1

Table S1889. Gene #237: 'SEC31A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
SEC31A MUTATED	2	7	2
SEC31A WILD-TYPE	22	38	19

'SEC31A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.849 (Fisher's exact test), Q value = 1

Table S1890. Gene #237: 'SEC31A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
SEC31A MUTATED	4	5	2
SEC31A WILD-TYPE	27	30	22

'SEC31A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.703 (Fisher's exact test), Q value = 1

Table S1891. Gene #237: 'SEC31A MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
SEC31A MUTATED	6	2	3
SEC31A WILD-TYPE	34	23	16

'SEC31A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.172 (Fisher's exact test), Q value = 1

Table S1892. Gene #237: 'SEC31A MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
SEC31A MUTATED	1	4	6
SEC31A WILD-TYPE	0	27	46

'SEC31A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.81 (Fisher's exact test), Q value = 1

Table S1893. Gene #237: 'SEC31A MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
SEC31A MUTATED	3	3	1	4
SEC31A WILD-TYPE	28	17	10	18

'SEC31A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1894. Gene #237: 'SEC31A MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
SEC31A MUTATED	5	2	4
SEC31A WILD-TYPE	32	14	27

'SEC31A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1895. Gene #237: 'SEC31A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
SEC31A MUTATED	5	3	3
SEC31A WILD-TYPE	33	17	23

'SEC31A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.768 (Fisher's exact test), Q value = 1

Table S1896. Gene #237: 'SEC31A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
SEC31A MUTATED	4	3	4
SEC31A WILD-TYPE	23	16	34

'RETN MUTATION STATUS' versus 'CN_CNMF'

P value = 0.201 (Fisher's exact test), Q value = 1

Table S1897. Gene #238: 'RETN MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
RETN MUTATED	0	1	2
RETN WILD-TYPE	24	44	19

'RETN MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.266 (Fisher's exact test), Q value = 1

Table S1898. Gene #238: 'RETN MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
RETN MUTATED	0	1	2
RETN WILD-TYPE	31	34	22

'RETN MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.314 (Fisher's exact test), Q value = 1

Table S1899. Gene #238: 'RETN MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
RETN MUTATED	3	0	0
RETN WILD-TYPE	37	25	19

'RETN MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.315 (Fisher's exact test), Q value = 1

Table S1900. Gene #238: 'RETN MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
RETN MUTATED	0	0	3
RETN WILD-TYPE	1	31	49

'RETN MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.573 (Fisher's exact test), Q value = 1

Table S1901. Gene #238: 'RETN MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
RETN MUTATED	1	0	0	2
RETN WILD-TYPE	30	20	11	20

'RETN MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.298 (Fisher's exact test), Q value = 1

Table S1902. Gene #238: 'RETN MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
RETN MUTATED	3	0	0
RETN WILD-TYPE	34	16	31

'RETN MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.324 (Fisher's exact test), Q value = 1

Table S1903. Gene #238: 'RETN MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
RETN MUTATED	3	0	0
RETN WILD-TYPE	35	20	26

'RETN MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.316 (Fisher's exact test), Q value = 1

Table S1904. Gene #238: 'RETN MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
RETN MUTATED	0	0	3
RETN WILD-TYPE	27	19	35

'PRKCD MUTATION STATUS' versus 'CN_CNMF'

P value = 0.591 (Fisher's exact test), Q value = 1

Table S1905. Gene #239: 'PRKCD MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
PRKCD MUTATED	3	3	1
PRKCD WILD-TYPE	21	42	20

'PRKCD MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.366 (Fisher's exact test), Q value = 1

Table S1906. Gene #239: 'PRKCD MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
PRKCD MUTATED	3	1	3
PRKCD WILD-TYPE	28	34	21

'PRKCD MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.352 (Fisher's exact test), Q value = 1

Table S1907. Gene #239: 'PRKCD MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
PRKCD MUTATED	4	3	0
PRKCD WILD-TYPE	36	22	19

'PRKCD MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00719 (Fisher's exact test), Q value = 1

Table S1908. Gene #239: 'PRKCD MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
PRKCD MUTATED	1	0	6
PRKCD WILD-TYPE	0	31	46

Figure S147. Get High-res Image Gene #239: 'PRKCD MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'PRKCD MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.854 (Fisher's exact test), Q value = 1

Table S1909. Gene #239: 'PRKCD MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
PRKCD MUTATED	3	2	0	2
PRKCD WILD-TYPE	28	18	11	20

'PRKCD MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.399 (Fisher's exact test), Q value = 1

Table S1910. Gene #239: 'PRKCD MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
PRKCD MUTATED	3	0	4
PRKCD WILD-TYPE	34	16	27

'PRKCD MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.113 (Fisher's exact test), Q value = 1

Table S1911. Gene #239: 'PRKCD MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
PRKCD MUTATED	4	3	0
PRKCD WILD-TYPE	34	17	26

'PRKCD MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.226 (Fisher's exact test), Q value = 1

Table S1912. Gene #239: 'PRKCD MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
PRKCD MUTATED	4	0	3
PRKCD WILD-TYPE	23	19	35

'ZNF326 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.423 (Fisher's exact test), Q value = 1

Table S1913. Gene #240: 'ZNF326 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
ZNF326 MUTATED	0	4	1
ZNF326 WILD-TYPE	24	41	20

'ZNF326 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.254 (Fisher's exact test), Q value = 1

Table S1914. Gene #240: 'ZNF326 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
ZNF326 MUTATED	0	3	2
ZNF326 WILD-TYPE	31	32	22

'ZNF326 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.704 (Fisher's exact test), Q value = 1

Table S1915. Gene #240: 'ZNF326 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
ZNF326 MUTATED	2	1	2
ZNF326 WILD-TYPE	38	24	17

'ZNF326 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0141 (Fisher's exact test), Q value = 1

Table S1916. Gene #240: 'ZNF326 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
ZNF326 MUTATED	1	3	1
ZNF326 WILD-TYPE	0	28	51

Figure S148. Get High-res Image Gene #240: 'ZNF326 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'ZNF326 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0924 (Fisher's exact test), Q value = 1

Table S1917. Gene #240: 'ZNF326 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
ZNF326 MUTATED	0	3	1	1
ZNF326 WILD-TYPE	31	17	10	21

'ZNF326 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.501 (Fisher's exact test), Q value = 1

Table S1918. Gene #240: 'ZNF326 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
ZNF326 MUTATED	1	1	3
ZNF326 WILD-TYPE	36	15	28

'ZNF326 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.147 (Fisher's exact test), Q value = 1

Table S1919. Gene #240: 'ZNF326 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
ZNF326 MUTATED	1	3	1
ZNF326 WILD-TYPE	37	17	25

'ZNF326 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.433 (Fisher's exact test), Q value = 1

Table S1920. Gene #240: 'ZNF326 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
ZNF326 MUTATED	3	1	1
ZNF326 WILD-TYPE	24	18	37

'MED12L MUTATION STATUS' versus 'CN_CNMF'

P value = 0.85 (Fisher's exact test), Q value = 1

Table S1921. Gene #241: 'MED12L MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
MED12L MUTATED	4	6	2
MED12L WILD-TYPE	20	39	19

'MED12L MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.803 (Fisher's exact test), Q value = 1

Table S1922. Gene #241: 'MED12L MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
MED12L MUTATED	5	4	4
MED12L WILD-TYPE	26	31	20

'MED12L MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.494 (Fisher's exact test), Q value = 1

Table S1923. Gene #241: 'MED12L MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
MED12L MUTATED	7	2	4
MED12L WILD-TYPE	33	23	15

'MED12L MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0759 (Fisher's exact test), Q value = 1

Table S1924. Gene #241: 'MED12L MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
MED12L MUTATED	1	6	6
MED12L WILD-TYPE	0	25	46

'MED12L MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.457 (Fisher's exact test), Q value = 1

Table S1925. Gene #241: 'MED12L MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
MED12L MUTATED	6	4	0	3
MED12L WILD-TYPE	25	16	11	19

'MED12L MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.805 (Fisher's exact test), Q value = 1

Table S1926. Gene #241: 'MED12L MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
MED12L MUTATED	6	3	4
MED12L WILD-TYPE	31	13	27

'MED12L MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.69 (Fisher's exact test), Q value = 1

Table S1927. Gene #241: 'MED12L MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
MED12L MUTATED	6	4	3
MED12L WILD-TYPE	32	16	23

'MED12L MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1928. Gene #241: 'MED12L MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
MED12L MUTATED	4	3	6
MED12L WILD-TYPE	23	16	32

'ATP2B3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.473 (Fisher's exact test), Q value = 1

Table S1929. Gene #242: 'ATP2B3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
ATP2B3 MUTATED	2	4	0
ATP2B3 WILD-TYPE	22	41	21

'ATP2B3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1930. Gene #242: 'ATP2B3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
ATP2B3 MUTATED	2	2	2
ATP2B3 WILD-TYPE	29	33	22

'ATP2B3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.219 (Fisher's exact test), Q value = 1

Table S1931. Gene #242: 'ATP2B3 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
ATP2B3 MUTATED	4	0	2
ATP2B3 WILD-TYPE	36	25	17

'ATP2B3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.095 (Fisher's exact test), Q value = 1

Table S1932. Gene #242: 'ATP2B3 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
ATP2B3 MUTATED	1	2	3
ATP2B3 WILD-TYPE	0	29	49

'ATP2B3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.189 (Fisher's exact test), Q value = 1

Table S1933. Gene #242: 'ATP2B3 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
ATP2B3 MUTATED	3	1	2	0
ATP2B3 WILD-TYPE	28	19	9	22

'ATP2B3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.406 (Fisher's exact test), Q value = 1

Table S1934. Gene #242: 'ATP2B3 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
ATP2B3 MUTATED	3	2	1
ATP2B3 WILD-TYPE	34	14	30

'ATP2B3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1935. Gene #242: 'ATP2B3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
ATP2B3 MUTATED	3	1	2
ATP2B3 WILD-TYPE	35	19	24

'ATP2B3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.662 (Fisher's exact test), Q value = 1

Table S1936. Gene #242: 'ATP2B3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
ATP2B3 MUTATED	1	2	3
ATP2B3 WILD-TYPE	26	17	35

'FNDC7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.54 (Fisher's exact test), Q value = 1

Table S1937. Gene #243: 'FNDC7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
FNDC7 MUTATED	3	2	1
FNDC7 WILD-TYPE	21	43	20

'FNDC7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.567 (Fisher's exact test), Q value = 1

Table S1938. Gene #243: 'FNDC7 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
FNDC7 MUTATED	3	1	2
FNDC7 WILD-TYPE	28	34	22

'FNDC7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.219 (Fisher's exact test), Q value = 1

Table S1939. Gene #243: 'FNDC7 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
FNDC7 MUTATED	4	0	2
FNDC7 WILD-TYPE	36	25	17

'FNDC7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1940. Gene #243: 'FNDC7 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
FNDC7 MUTATED	0	2	4
FNDC7 WILD-TYPE	1	29	48

'FNDC7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.061 (Fisher's exact test), Q value = 1

Table S1941. Gene #243: 'FNDC7 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
FNDC7 MUTATED	4	0	2	0
FNDC7 WILD-TYPE	27	20	9	22

'FNDC7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.103 (Fisher's exact test), Q value = 1

Table S1942. Gene #243: 'FNDC7 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
FNDC7 MUTATED	4	2	0
FNDC7 WILD-TYPE	33	14	31

'FNDC7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.471 (Fisher's exact test), Q value = 1

Table S1943. Gene #243: 'FNDC7 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
FNDC7 MUTATED	4	0	2
FNDC7 WILD-TYPE	34	20	24

'FNDC7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.16 (Fisher's exact test), Q value = 1

Table S1944. Gene #243: 'FNDC7 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
FNDC7 MUTATED	0	2	4
FNDC7 WILD-TYPE	27	17	34

'RBM45 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.473 (Fisher's exact test), Q value = 1

Table S1945. Gene #244: 'RBM45 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
RBM45 MUTATED	2	4	0
RBM45 WILD-TYPE	22	41	21

'RBM45 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.375 (Fisher's exact test), Q value = 1

Table S1946. Gene #244: 'RBM45 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
RBM45 MUTATED	2	1	3
RBM45 WILD-TYPE	29	34	21

'RBM45 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.861 (Fisher's exact test), Q value = 1

Table S1947. Gene #244: 'RBM45 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
RBM45 MUTATED	4	1	1
RBM45 WILD-TYPE	36	24	18

'RBM45 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.095 (Fisher's exact test), Q value = 1

Table S1948. Gene #244: 'RBM45 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
RBM45 MUTATED	1	2	3
RBM45 WILD-TYPE	0	29	49

'RBM45 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.734 (Fisher's exact test), Q value = 1

Table S1949. Gene #244: 'RBM45 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
RBM45 MUTATED	3	2	0	1
RBM45 WILD-TYPE	28	18	11	21

'RBM45 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1950. Gene #244: 'RBM45 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
RBM45 MUTATED	3	1	2
RBM45 WILD-TYPE	34	15	29

'RBM45 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.758 (Fisher's exact test), Q value = 1

Table S1951. Gene #244: 'RBM45 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
RBM45 MUTATED	3	2	1
RBM45 WILD-TYPE	35	18	25

'RBM45 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1952. Gene #244: 'RBM45 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
RBM45 MUTATED	2	1	3
RBM45 WILD-TYPE	25	18	35

'INF2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.43 (Fisher's exact test), Q value = 1

Table S1953. Gene #245: 'INF2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
INF2 MUTATED	1	6	1
INF2 WILD-TYPE	23	39	20

'INF2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.329 (Fisher's exact test), Q value = 1

Table S1954. Gene #245: 'INF2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
INF2 MUTATED	1	5	2
INF2 WILD-TYPE	30	30	22

'INF2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.801 (Fisher's exact test), Q value = 1

Table S1955. Gene #245: 'INF2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
INF2 MUTATED	3	3	2
INF2 WILD-TYPE	37	22	17

'INF2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0429 (Fisher's exact test), Q value = 1

Table S1956. Gene #245: 'INF2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
INF2 MUTATED	1	4	3
INF2 WILD-TYPE	0	27	49

Figure S149. Get High-res Image Gene #245: 'INF2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'INF2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.378 (Fisher's exact test), Q value = 1

Table S1957. Gene #245: 'INF2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
INF2 MUTATED	1	3	1	3
INF2 WILD-TYPE	30	17	10	19

'INF2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.546 (Fisher's exact test), Q value = 1

Table S1958. Gene #245: 'INF2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
INF2 MUTATED	2	2	4
INF2 WILD-TYPE	35	14	27

'INF2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.244 (Fisher's exact test), Q value = 1

Table S1959. Gene #245: 'INF2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
INF2 MUTATED	2	4	2
INF2 WILD-TYPE	36	16	24

'INF2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.447 (Fisher's exact test), Q value = 1

Table S1960. Gene #245: 'INF2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
INF2 MUTATED	4	2	2
INF2 WILD-TYPE	23	17	36

'PARP3 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1961. Gene #246: 'PARP3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
PARP3 MUTATED	1	2	1
PARP3 WILD-TYPE	23	43	20

'PARP3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1962. Gene #246: 'PARP3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
PARP3 MUTATED	1	2	1
PARP3 WILD-TYPE	30	33	23

'PARP3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.559 (Fisher's exact test), Q value = 1

Table S1963. Gene #246: 'PARP3 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
PARP3 MUTATED	1	2	1
PARP3 WILD-TYPE	39	23	18

'PARP3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.645 (Fisher's exact test), Q value = 1

Table S1964. Gene #246: 'PARP3 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
PARP3 MUTATED	0	2	2
PARP3 WILD-TYPE	1	29	50

'PARP3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.894 (Fisher's exact test), Q value = 1

Table S1965. Gene #246: 'PARP3 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
PARP3 MUTATED	1	1	1	1
PARP3 WILD-TYPE	30	19	10	21

'PARP3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.668 (Fisher's exact test), Q value = 1

Table S1966. Gene #246: 'PARP3 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
PARP3 MUTATED	1	1	2
PARP3 WILD-TYPE	36	15	29

'PARP3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.45 (Fisher's exact test), Q value = 1

Table S1967. Gene #246: 'PARP3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
PARP3 MUTATED	1	2	1
PARP3 WILD-TYPE	37	18	25

'PARP3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.813 (Fisher's exact test), Q value = 1

Table S1968. Gene #246: 'PARP3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
PARP3 MUTATED	2	1	1
PARP3 WILD-TYPE	25	18	37

'CDO1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.504 (Fisher's exact test), Q value = 1

Table S1969. Gene #247: 'CDO1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
CDO1 MUTATED	1	4	0
CDO1 WILD-TYPE	23	41	21

'CDO1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.213 (Fisher's exact test), Q value = 1

Table S1970. Gene #247: 'CDO1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
CDO1 MUTATED	1	4	0
CDO1 WILD-TYPE	30	31	24

'CDO1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.848 (Fisher's exact test), Q value = 1

Table S1971. Gene #247: 'CDO1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
CDO1 MUTATED	2	2	1
CDO1 WILD-TYPE	38	23	18

'CDO1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1972. Gene #247: 'CDO1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
CDO1 MUTATED	0	2	3
CDO1 WILD-TYPE	1	29	49

'CDO1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.419 (Fisher's exact test), Q value = 1

Table S1973. Gene #247: 'CDO1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
CDO1 MUTATED	1	1	0	3
CDO1 WILD-TYPE	30	19	11	19

'CDO1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1974. Gene #247: 'CDO1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
CDO1 MUTATED	2	1	2
CDO1 WILD-TYPE	35	15	29

'CDO1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1975. Gene #247: 'CDO1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
CDO1 MUTATED	2	1	2
CDO1 WILD-TYPE	36	19	24

'CDO1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.507 (Fisher's exact test), Q value = 1

Table S1976. Gene #247: 'CDO1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
CDO1 MUTATED	2	2	1
CDO1 WILD-TYPE	25	17	37

'FAM98A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.448 (Fisher's exact test), Q value = 1

Table S1977. Gene #248: 'FAM98A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
FAM98A MUTATED	2	1	1
FAM98A WILD-TYPE	22	44	20

'FAM98A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.305 (Fisher's exact test), Q value = 1

Table S1978. Gene #248: 'FAM98A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
FAM98A MUTATED	3	1	0
FAM98A WILD-TYPE	28	34	24

'FAM98A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.441 (Fisher's exact test), Q value = 1

Table S1979. Gene #248: 'FAM98A MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
FAM98A MUTATED	3	0	1
FAM98A WILD-TYPE	37	25	18

'FAM98A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1980. Gene #248: 'FAM98A MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
FAM98A MUTATED	0	1	3
FAM98A WILD-TYPE	1	30	49

'FAM98A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.508 (Fisher's exact test), Q value = 1

Table S1981. Gene #248: 'FAM98A MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
FAM98A MUTATED	3	0	0	1
FAM98A WILD-TYPE	28	20	11	21

'FAM98A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.243 (Fisher's exact test), Q value = 1

Table S1982. Gene #248: 'FAM98A MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
FAM98A MUTATED	3	1	0
FAM98A WILD-TYPE	34	15	31

'FAM98A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.564 (Fisher's exact test), Q value = 1

Table S1983. Gene #248: 'FAM98A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
FAM98A MUTATED	3	0	1
FAM98A WILD-TYPE	35	20	25

'FAM98A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.345 (Fisher's exact test), Q value = 1

Table S1984. Gene #248: 'FAM98A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
FAM98A MUTATED	0	1	3
FAM98A WILD-TYPE	27	18	35

'RBM24 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1985. Gene #249: 'RBM24 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
RBM24 MUTATED	1	2	0
RBM24 WILD-TYPE	23	43	21

'RBM24 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.266 (Fisher's exact test), Q value = 1

Table S1986. Gene #249: 'RBM24 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
RBM24 MUTATED	0	1	2
RBM24 WILD-TYPE	31	34	22

'RBM24 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.44 (Fisher's exact test), Q value = 1

Table S1987. Gene #249: 'RBM24 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
RBM24 MUTATED	1	2	0
RBM24 WILD-TYPE	39	23	19

'RBM24 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1988. Gene #249: 'RBM24 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
RBM24 MUTATED	0	1	2
RBM24 WILD-TYPE	1	30	50

'RBM24 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.426 (Fisher's exact test), Q value = 1

Table S1989. Gene #249: 'RBM24 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
RBM24 MUTATED	1	2	0	0
RBM24 WILD-TYPE	30	18	11	22

'RBM24 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.591 (Fisher's exact test), Q value = 1

Table S1990. Gene #249: 'RBM24 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
RBM24 MUTATED	1	0	2
RBM24 WILD-TYPE	36	16	29

'RBM24 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.235 (Fisher's exact test), Q value = 1

Table S1991. Gene #249: 'RBM24 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
RBM24 MUTATED	1	2	0
RBM24 WILD-TYPE	37	18	26

'RBM24 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.456 (Fisher's exact test), Q value = 1

Table S1992. Gene #249: 'RBM24 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
RBM24 MUTATED	2	0	1
RBM24 WILD-TYPE	25	19	37

'AAMP MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1993. Gene #250: 'AAMP MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
AAMP MUTATED	1	2	1
AAMP WILD-TYPE	23	43	20

'AAMP MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.557 (Fisher's exact test), Q value = 1

Table S1994. Gene #250: 'AAMP MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
AAMP MUTATED	2	2	0
AAMP WILD-TYPE	29	33	24

'AAMP MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.255 (Fisher's exact test), Q value = 1

Table S1995. Gene #250: 'AAMP MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
AAMP MUTATED	2	0	2
AAMP WILD-TYPE	38	25	17

'AAMP MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.645 (Fisher's exact test), Q value = 1

Table S1996. Gene #250: 'AAMP MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
AAMP MUTATED	0	2	2
AAMP WILD-TYPE	1	29	50

'AAMP MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0788 (Fisher's exact test), Q value = 1

Table S1997. Gene #250: 'AAMP MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
AAMP MUTATED	2	0	2	0
AAMP WILD-TYPE	29	20	9	22

'AAMP MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.179 (Fisher's exact test), Q value = 1

Table S1998. Gene #250: 'AAMP MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
AAMP MUTATED	2	2	0
AAMP WILD-TYPE	35	14	31

'AAMP MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.683 (Fisher's exact test), Q value = 1

Table S1999. Gene #250: 'AAMP MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
AAMP MUTATED	2	0	2
AAMP WILD-TYPE	36	20	24

'AAMP MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.262 (Fisher's exact test), Q value = 1

Table S2000. Gene #250: 'AAMP MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
AAMP MUTATED	0	2	2
AAMP WILD-TYPE	27	17	36

'KBTBD4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.117 (Fisher's exact test), Q value = 1

Table S2001. Gene #251: 'KBTBD4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
KBTBD4 MUTATED	3	1	0
KBTBD4 WILD-TYPE	21	44	21

'KBTBD4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.305 (Fisher's exact test), Q value = 1

Table S2002. Gene #251: 'KBTBD4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
KBTBD4 MUTATED	3	1	0
KBTBD4 WILD-TYPE	28	34	24

'KBTBD4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.255 (Fisher's exact test), Q value = 1

Table S2003. Gene #251: 'KBTBD4 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
KBTBD4 MUTATED	2	0	2
KBTBD4 WILD-TYPE	38	25	17

'KBTBD4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S2004. Gene #251: 'KBTBD4 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
KBTBD4 MUTATED	0	1	3
KBTBD4 WILD-TYPE	1	30	49

'KBTBD4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.675 (Fisher's exact test), Q value = 1

Table S2005. Gene #251: 'KBTBD4 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
KBTBD4 MUTATED	2	0	1	1
KBTBD4 WILD-TYPE	29	20	10	21

'KBTBD4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.243 (Fisher's exact test), Q value = 1

Table S2006. Gene #251: 'KBTBD4 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
KBTBD4 MUTATED	3	1	0
KBTBD4 WILD-TYPE	34	15	31

'KBTBD4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.683 (Fisher's exact test), Q value = 1

Table S2007. Gene #251: 'KBTBD4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
KBTBD4 MUTATED	2	0	2
KBTBD4 WILD-TYPE	36	20	24

'KBTBD4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.345 (Fisher's exact test), Q value = 1

Table S2008. Gene #251: 'KBTBD4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
KBTBD4 MUTATED	0	1	3
KBTBD4 WILD-TYPE	27	18	35

'KCTD19 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.837 (Fisher's exact test), Q value = 1

Table S2009. Gene #252: 'KCTD19 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
KCTD19 MUTATED	2	2	1
KCTD19 WILD-TYPE	22	43	20

'KCTD19 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.622 (Fisher's exact test), Q value = 1

Table S2010. Gene #252: 'KCTD19 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
KCTD19 MUTATED	2	1	2
KCTD19 WILD-TYPE	29	34	22

'KCTD19 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.188 (Fisher's exact test), Q value = 1

Table S2011. Gene #252: 'KCTD19 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
KCTD19 MUTATED	3	0	2
KCTD19 WILD-TYPE	37	25	17

'KCTD19 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.065 (Fisher's exact test), Q value = 1

Table S2012. Gene #252: 'KCTD19 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
KCTD19 MUTATED	1	1	3
KCTD19 WILD-TYPE	0	30	49

'KCTD19 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.927 (Fisher's exact test), Q value = 1

Table S2013. Gene #252: 'KCTD19 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
KCTD19 MUTATED	2	1	0	2
KCTD19 WILD-TYPE	29	19	11	20

'KCTD19 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.839 (Fisher's exact test), Q value = 1

Table S2014. Gene #252: 'KCTD19 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
KCTD19 MUTATED	3	1	1
KCTD19 WILD-TYPE	34	15	30

'KCTD19 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2015. Gene #252: 'KCTD19 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
KCTD19 MUTATED	2	1	2
KCTD19 WILD-TYPE	36	19	24

'KCTD19 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.848 (Fisher's exact test), Q value = 1

Table S2016. Gene #252: 'KCTD19 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
KCTD19 MUTATED	1	1	3
KCTD19 WILD-TYPE	26	18	35

'EPS8L3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.212 (Fisher's exact test), Q value = 1

Table S2017. Gene #253: 'EPS8L3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
EPS8L3 MUTATED	0	5	1
EPS8L3 WILD-TYPE	24	40	20

'EPS8L3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.497 (Fisher's exact test), Q value = 1

Table S2018. Gene #253: 'EPS8L3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
EPS8L3 MUTATED	1	4	1
EPS8L3 WILD-TYPE	30	31	23

'EPS8L3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2019. Gene #253: 'EPS8L3 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
EPS8L3 MUTATED	3	1	1
EPS8L3 WILD-TYPE	37	24	18

'EPS8L3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0428 (Fisher's exact test), Q value = 1

Table S2020. Gene #253: 'EPS8L3 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
EPS8L3 MUTATED	1	2	2
EPS8L3 WILD-TYPE	0	29	50

Figure S150. Get High-res Image Gene #253: 'EPS8L3 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'EPS8L3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.679 (Fisher's exact test), Q value = 1

Table S2021. Gene #253: 'EPS8L3 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
EPS8L3 MUTATED	1	2	1	1
EPS8L3 WILD-TYPE	30	18	10	21

'EPS8L3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S2022. Gene #253: 'EPS8L3 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
EPS8L3 MUTATED	2	1	2
EPS8L3 WILD-TYPE	35	15	29

'EPS8L3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.509 (Fisher's exact test), Q value = 1

Table S2023. Gene #253: 'EPS8L3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
EPS8L3 MUTATED	1	2	2
EPS8L3 WILD-TYPE	37	18	24

'EPS8L3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.507 (Fisher's exact test), Q value = 1

Table S2024. Gene #253: 'EPS8L3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
EPS8L3 MUTATED	2	2	1
EPS8L3 WILD-TYPE	25	17	37

'HMX2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0726 (Fisher's exact test), Q value = 1

Table S2025. Gene #254: 'HMX2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
HMX2 MUTATED	0	5	0
HMX2 WILD-TYPE	24	40	21

'HMX2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.176 (Fisher's exact test), Q value = 1

Table S2026. Gene #254: 'HMX2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
HMX2 MUTATED	0	4	1
HMX2 WILD-TYPE	31	31	23

'HMX2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.426 (Fisher's exact test), Q value = 1

Table S2027. Gene #254: 'HMX2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
HMX2 MUTATED	1	2	2
HMX2 WILD-TYPE	39	23	17

'HMX2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0141 (Fisher's exact test), Q value = 1

Table S2028. Gene #254: 'HMX2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
HMX2 MUTATED	1	3	1
HMX2 WILD-TYPE	0	28	51

Figure S151. Get High-res Image Gene #254: 'HMX2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'HMX2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.123 (Fisher's exact test), Q value = 1

Table S2029. Gene #254: 'HMX2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
HMX2 MUTATED	0	1	1	3
HMX2 WILD-TYPE	31	19	10	19

'HMX2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0781 (Fisher's exact test), Q value = 1

Table S2030. Gene #254: 'HMX2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
HMX2 MUTATED	0	2	3
HMX2 WILD-TYPE	37	14	28

'HMX2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0504 (Fisher's exact test), Q value = 1

Table S2031. Gene #254: 'HMX2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
HMX2 MUTATED	0	2	3
HMX2 WILD-TYPE	38	18	23

'HMX2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0492 (Fisher's exact test), Q value = 1

Table S2032. Gene #254: 'HMX2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
HMX2 MUTATED	3	2	0
HMX2 WILD-TYPE	24	17	38

Figure S152. Get High-res Image Gene #254: 'HMX2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

'C19ORF47 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.671 (Fisher's exact test), Q value = 1

Table S2033. Gene #255: 'C19ORF47 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
C19ORF47 MUTATED	0	3	1
C19ORF47 WILD-TYPE	24	42	20

'C19ORF47 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.369 (Fisher's exact test), Q value = 1

Table S2034. Gene #255: 'C19ORF47 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
C19ORF47 MUTATED	0	2	2
C19ORF47 WILD-TYPE	31	33	22

'C19ORF47 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2035. Gene #255: 'C19ORF47 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
C19ORF47 MUTATED	2	1	1
C19ORF47 WILD-TYPE	38	24	18

'C19ORF47 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0263 (Fisher's exact test), Q value = 1

Table S2036. Gene #255: 'C19ORF47 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
C19ORF47 MUTATED	1	2	1
C19ORF47 WILD-TYPE	0	29	51

Figure S153. Get High-res Image Gene #255: 'C19ORF47 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'C19ORF47 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0655 (Fisher's exact test), Q value = 1

Table S2037. Gene #255: 'C19ORF47 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
C19ORF47 MUTATED	0	3	0	1
C19ORF47 WILD-TYPE	31	17	11	21

'C19ORF47 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.401 (Fisher's exact test), Q value = 1

Table S2038. Gene #255: 'C19ORF47 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
C19ORF47 MUTATED	1	0	3
C19ORF47 WILD-TYPE	36	16	28

'C19ORF47 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.266 (Fisher's exact test), Q value = 1

Table S2039. Gene #255: 'C19ORF47 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
C19ORF47 MUTATED	2	2	0
C19ORF47 WILD-TYPE	36	18	26

'C19ORF47 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.2 (Fisher's exact test), Q value = 1

Table S2040. Gene #255: 'C19ORF47 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
C19ORF47 MUTATED	3	0	1
C19ORF47 WILD-TYPE	24	19	37

'NARG2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.161 (Fisher's exact test), Q value = 1

Table S2041. Gene #256: 'NARG2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
NARG2 MUTATED	7	5	4
NARG2 WILD-TYPE	17	40	17

'NARG2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00942 (Fisher's exact test), Q value = 1

Table S2042. Gene #256: 'NARG2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
NARG2 MUTATED	11	3	2
NARG2 WILD-TYPE	20	32	22

Figure S154. Get High-res Image Gene #256: 'NARG2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'NARG2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0497 (Fisher's exact test), Q value = 1

Table S2043. Gene #256: 'NARG2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
NARG2 MUTATED	12	3	1
NARG2 WILD-TYPE	28	22	18

Figure S155. Get High-res Image Gene #256: 'NARG2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

'NARG2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00178 (Fisher's exact test), Q value = 1

Table S2044. Gene #256: 'NARG2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
NARG2 MUTATED	1	1	14
NARG2 WILD-TYPE	0	30	38

Figure S156. Get High-res Image Gene #256: 'NARG2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'NARG2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0498 (Fisher's exact test), Q value = 1

Table S2045. Gene #256: 'NARG2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
NARG2 MUTATED	11	2	1	2
NARG2 WILD-TYPE	20	18	10	20

Figure S157. Get High-res Image Gene #256: 'NARG2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

'NARG2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.199 (Fisher's exact test), Q value = 1

Table S2046. Gene #256: 'NARG2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
NARG2 MUTATED	10	1	5
NARG2 WILD-TYPE	27	15	26

'NARG2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00485 (Fisher's exact test), Q value = 1

Table S2047. Gene #256: 'NARG2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
NARG2 MUTATED	13	2	1
NARG2 WILD-TYPE	25	18	25

Figure S158. Get High-res Image Gene #256: 'NARG2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

'NARG2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0384 (Fisher's exact test), Q value = 1

Table S2048. Gene #256: 'NARG2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
NARG2 MUTATED	3	1	12
NARG2 WILD-TYPE	24	18	26

Figure S159. Get High-res Image Gene #256: 'NARG2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

'ZC3H4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.9 (Fisher's exact test), Q value = 1

Table S2049. Gene #257: 'ZC3H4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
ZC3H4 MUTATED	3	4	2
ZC3H4 WILD-TYPE	21	41	19

'ZC3H4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2050. Gene #257: 'ZC3H4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
ZC3H4 MUTATED	3	3	2
ZC3H4 WILD-TYPE	28	32	22

'ZC3H4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.108 (Fisher's exact test), Q value = 1

Table S2051. Gene #257: 'ZC3H4 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
ZC3H4 MUTATED	1	4	2
ZC3H4 WILD-TYPE	39	21	17

'ZC3H4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0646 (Fisher's exact test), Q value = 1

Table S2052. Gene #257: 'ZC3H4 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
ZC3H4 MUTATED	1	3	3
ZC3H4 WILD-TYPE	0	28	49

'ZC3H4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0391 (Fisher's exact test), Q value = 1

Table S2053. Gene #257: 'ZC3H4 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
ZC3H4 MUTATED	1	5	0	1
ZC3H4 WILD-TYPE	30	15	11	21

Figure S160. Get High-res Image Gene #257: 'ZC3H4 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

'ZC3H4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0271 (Fisher's exact test), Q value = 1

Table S2054. Gene #257: 'ZC3H4 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
ZC3H4 MUTATED	1	0	6
ZC3H4 WILD-TYPE	36	16	25

Figure S161. Get High-res Image Gene #257: 'ZC3H4 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'ZC3H4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.132 (Fisher's exact test), Q value = 1

Table S2055. Gene #257: 'ZC3H4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
ZC3H4 MUTATED	2	4	1
ZC3H4 WILD-TYPE	36	16	25

'ZC3H4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0645 (Fisher's exact test), Q value = 1

Table S2056. Gene #257: 'ZC3H4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
ZC3H4 MUTATED	5	0	2
ZC3H4 WILD-TYPE	22	19	36

'TIGD7 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2057. Gene #258: 'TIGD7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
TIGD7 MUTATED	1	2	1
TIGD7 WILD-TYPE	23	43	20

'TIGD7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0892 (Fisher's exact test), Q value = 1

Table S2058. Gene #258: 'TIGD7 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
TIGD7 MUTATED	0	1	3
TIGD7 WILD-TYPE	31	34	21

'TIGD7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.441 (Fisher's exact test), Q value = 1

Table S2059. Gene #258: 'TIGD7 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
TIGD7 MUTATED	3	0	1
TIGD7 WILD-TYPE	37	25	18

'TIGD7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0639 (Fisher's exact test), Q value = 1

Table S2060. Gene #258: 'TIGD7 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
TIGD7 MUTATED	1	1	2
TIGD7 WILD-TYPE	0	30	50

'TIGD7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.894 (Fisher's exact test), Q value = 1

Table S2061. Gene #258: 'TIGD7 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
TIGD7 MUTATED	1	1	1	1
TIGD7 WILD-TYPE	30	19	10	21

'TIGD7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S2062. Gene #258: 'TIGD7 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
TIGD7 MUTATED	2	1	1
TIGD7 WILD-TYPE	35	15	30

'TIGD7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.811 (Fisher's exact test), Q value = 1

Table S2063. Gene #258: 'TIGD7 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
TIGD7 MUTATED	1	1	2
TIGD7 WILD-TYPE	37	19	24

'TIGD7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S2064. Gene #258: 'TIGD7 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
TIGD7 MUTATED	1	1	2
TIGD7 WILD-TYPE	26	18	36

'TATDN2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.591 (Fisher's exact test), Q value = 1

Table S2065. Gene #259: 'TATDN2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
TATDN2 MUTATED	3	3	1
TATDN2 WILD-TYPE	21	42	20

'TATDN2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.888 (Fisher's exact test), Q value = 1

Table S2066. Gene #259: 'TATDN2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
TATDN2 MUTATED	3	2	2
TATDN2 WILD-TYPE	28	33	22

'TATDN2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.592 (Fisher's exact test), Q value = 1

Table S2067. Gene #259: 'TATDN2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
TATDN2 MUTATED	5	1	1
TATDN2 WILD-TYPE	35	24	18

'TATDN2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0426 (Fisher's exact test), Q value = 1

Table S2068. Gene #259: 'TATDN2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
TATDN2 MUTATED	1	1	5
TATDN2 WILD-TYPE	0	30	47

Figure S162. Get High-res Image Gene #259: 'TATDN2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'TATDN2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.71 (Fisher's exact test), Q value = 1

Table S2069. Gene #259: 'TATDN2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
TATDN2 MUTATED	3	1	0	3
TATDN2 WILD-TYPE	28	19	11	19

'TATDN2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.877 (Fisher's exact test), Q value = 1

Table S2070. Gene #259: 'TATDN2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
TATDN2 MUTATED	4	1	2
TATDN2 WILD-TYPE	33	15	29

'TATDN2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.682 (Fisher's exact test), Q value = 1

Table S2071. Gene #259: 'TATDN2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
TATDN2 MUTATED	4	2	1
TATDN2 WILD-TYPE	34	18	25

'TATDN2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.888 (Fisher's exact test), Q value = 1

Table S2072. Gene #259: 'TATDN2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
TATDN2 MUTATED	2	1	4
TATDN2 WILD-TYPE	25	18	34

'GSTA1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.423 (Fisher's exact test), Q value = 1

Table S2073. Gene #260: 'GSTA1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
GSTA1 MUTATED	0	4	1
GSTA1 WILD-TYPE	24	41	20

'GSTA1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.733 (Fisher's exact test), Q value = 1

Table S2074. Gene #260: 'GSTA1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
GSTA1 MUTATED	1	3	1
GSTA1 WILD-TYPE	30	32	23

'GSTA1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2075. Gene #260: 'GSTA1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
GSTA1 MUTATED	3	1	1
GSTA1 WILD-TYPE	37	24	18

'GSTA1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S2076. Gene #260: 'GSTA1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
GSTA1 MUTATED	0	2	3
GSTA1 WILD-TYPE	1	29	49

'GSTA1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.73 (Fisher's exact test), Q value = 1

Table S2077. Gene #260: 'GSTA1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
GSTA1 MUTATED	1	1	1	2
GSTA1 WILD-TYPE	30	19	10	20

'GSTA1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.598 (Fisher's exact test), Q value = 1

Table S2078. Gene #260: 'GSTA1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
GSTA1 MUTATED	2	0	3
GSTA1 WILD-TYPE	35	16	28

'GSTA1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.852 (Fisher's exact test), Q value = 1

Table S2079. Gene #260: 'GSTA1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
GSTA1 MUTATED	3	1	1
GSTA1 WILD-TYPE	35	19	25

'GSTA1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.603 (Fisher's exact test), Q value = 1

Table S2080. Gene #260: 'GSTA1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
GSTA1 MUTATED	2	0	3
GSTA1 WILD-TYPE	25	19	35

'PDZD7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.345 (Fisher's exact test), Q value = 1

Table S2081. Gene #261: 'PDZD7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
PDZD7 MUTATED	2	5	0
PDZD7 WILD-TYPE	22	40	21

'PDZD7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.481 (Fisher's exact test), Q value = 1

Table S2082. Gene #261: 'PDZD7 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
PDZD7 MUTATED	1	4	2
PDZD7 WILD-TYPE	30	31	22

'PDZD7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.352 (Fisher's exact test), Q value = 1

Table S2083. Gene #261: 'PDZD7 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
PDZD7 MUTATED	4	3	0
PDZD7 WILD-TYPE	36	22	19

'PDZD7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0924 (Fisher's exact test), Q value = 1

Table S2084. Gene #261: 'PDZD7 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
PDZD7 MUTATED	1	2	4
PDZD7 WILD-TYPE	0	29	48

'PDZD7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.592 (Fisher's exact test), Q value = 1

Table S2085. Gene #261: 'PDZD7 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
PDZD7 MUTATED	2	3	0	2
PDZD7 WILD-TYPE	29	17	11	20

'PDZD7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.399 (Fisher's exact test), Q value = 1

Table S2086. Gene #261: 'PDZD7 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
PDZD7 MUTATED	3	0	4
PDZD7 WILD-TYPE	34	16	27

'PDZD7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.467 (Fisher's exact test), Q value = 1

Table S2087. Gene #261: 'PDZD7 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
PDZD7 MUTATED	2	3	2
PDZD7 WILD-TYPE	36	17	24

'PDZD7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.414 (Fisher's exact test), Q value = 1

Table S2088. Gene #261: 'PDZD7 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
PDZD7 MUTATED	4	1	2
PDZD7 WILD-TYPE	23	18	36

'SPRY4 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2089. Gene #262: 'SPRY4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
SPRY4 MUTATED	1	2	0
SPRY4 WILD-TYPE	23	43	21

'SPRY4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.778 (Fisher's exact test), Q value = 1

Table S2090. Gene #262: 'SPRY4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
SPRY4 MUTATED	1	2	0
SPRY4 WILD-TYPE	30	33	24

'SPRY4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.596 (Fisher's exact test), Q value = 1

Table S2091. Gene #262: 'SPRY4 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
SPRY4 MUTATED	2	0	1
SPRY4 WILD-TYPE	38	25	18

'SPRY4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S2092. Gene #262: 'SPRY4 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
SPRY4 MUTATED	0	1	2
SPRY4 WILD-TYPE	1	30	50

'SPRY4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2093. Gene #262: 'SPRY4 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
SPRY4 MUTATED	1	1	0	1
SPRY4 WILD-TYPE	30	19	11	21

'SPRY4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S2094. Gene #262: 'SPRY4 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
SPRY4 MUTATED	2	0	1
SPRY4 WILD-TYPE	35	16	30

'SPRY4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.601 (Fisher's exact test), Q value = 1

Table S2095. Gene #262: 'SPRY4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
SPRY4 MUTATED	2	1	0
SPRY4 WILD-TYPE	36	19	26

'SPRY4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.795 (Fisher's exact test), Q value = 1

Table S2096. Gene #262: 'SPRY4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
SPRY4 MUTATED	1	0	2
SPRY4 WILD-TYPE	26	19	36

'ZMYND19 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.257 (Fisher's exact test), Q value = 1

Table S2097. Gene #263: 'ZMYND19 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
ZMYND19 MUTATED	0	2	2
ZMYND19 WILD-TYPE	24	43	19

'ZMYND19 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.674 (Fisher's exact test), Q value = 1

Table S2098. Gene #263: 'ZMYND19 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
ZMYND19 MUTATED	1	1	2
ZMYND19 WILD-TYPE	30	34	22

'ZMYND19 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.441 (Fisher's exact test), Q value = 1

Table S2099. Gene #263: 'ZMYND19 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
ZMYND19 MUTATED	3	0	1
ZMYND19 WILD-TYPE	37	25	18

'ZMYND19 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0639 (Fisher's exact test), Q value = 1

Table S2100. Gene #263: 'ZMYND19 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
ZMYND19 MUTATED	1	1	2
ZMYND19 WILD-TYPE	0	30	50

'ZMYND19 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2101. Gene #263: 'ZMYND19 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
ZMYND19 MUTATED	2	1	0	1
ZMYND19 WILD-TYPE	29	19	11	21

'ZMYND19 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S2102. Gene #263: 'ZMYND19 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
ZMYND19 MUTATED	2	1	1
ZMYND19 WILD-TYPE	35	15	30

'ZMYND19 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2103. Gene #263: 'ZMYND19 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
ZMYND19 MUTATED	2	1	1
ZMYND19 WILD-TYPE	36	19	25

'ZMYND19 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S2104. Gene #263: 'ZMYND19 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
ZMYND19 MUTATED	1	1	2
ZMYND19 WILD-TYPE	26	18	36

'SULT1B1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.805 (Fisher's exact test), Q value = 1

Table S2105. Gene #264: 'SULT1B1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
SULT1B1 MUTATED	1	3	0
SULT1B1 WILD-TYPE	23	42	21

'SULT1B1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2106. Gene #264: 'SULT1B1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
SULT1B1 MUTATED	1	2	1
SULT1B1 WILD-TYPE	30	33	23

'SULT1B1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.559 (Fisher's exact test), Q value = 1

Table S2107. Gene #264: 'SULT1B1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
SULT1B1 MUTATED	1	2	1
SULT1B1 WILD-TYPE	39	23	18

'SULT1B1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0263 (Fisher's exact test), Q value = 1

Table S2108. Gene #264: 'SULT1B1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
SULT1B1 MUTATED	1	2	1
SULT1B1 WILD-TYPE	0	29	51

Figure S163. Get High-res Image Gene #264: 'SULT1B1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'SULT1B1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.213 (Fisher's exact test), Q value = 1

Table S2109. Gene #264: 'SULT1B1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
SULT1B1 MUTATED	0	2	1	1
SULT1B1 WILD-TYPE	31	18	10	21

'SULT1B1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.401 (Fisher's exact test), Q value = 1

Table S2110. Gene #264: 'SULT1B1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
SULT1B1 MUTATED	1	0	3
SULT1B1 WILD-TYPE	36	16	28

'SULT1B1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0256 (Fisher's exact test), Q value = 1

Table S2111. Gene #264: 'SULT1B1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
SULT1B1 MUTATED	0	3	1
SULT1B1 WILD-TYPE	38	17	25

Figure S164. Get High-res Image Gene #264: 'SULT1B1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

'SULT1B1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.2 (Fisher's exact test), Q value = 1

Table S2112. Gene #264: 'SULT1B1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
SULT1B1 MUTATED	3	0	1
SULT1B1 WILD-TYPE	24	19	37

'WDR88 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.54 (Fisher's exact test), Q value = 1

Table S2113. Gene #265: 'WDR88 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
WDR88 MUTATED	3	2	1
WDR88 WILD-TYPE	21	43	20

'WDR88 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.375 (Fisher's exact test), Q value = 1

Table S2114. Gene #265: 'WDR88 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
WDR88 MUTATED	2	1	3
WDR88 WILD-TYPE	29	34	21

'WDR88 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.181 (Fisher's exact test), Q value = 1

Table S2115. Gene #265: 'WDR88 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
WDR88 MUTATED	5	0	1
WDR88 WILD-TYPE	35	25	18

'WDR88 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.048 (Fisher's exact test), Q value = 1

Table S2116. Gene #265: 'WDR88 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
WDR88 MUTATED	1	1	4
WDR88 WILD-TYPE	0	30	48

Figure S165. Get High-res Image Gene #265: 'WDR88 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'WDR88 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.836 (Fisher's exact test), Q value = 1

Table S2117. Gene #265: 'WDR88 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
WDR88 MUTATED	3	1	0	2
WDR88 WILD-TYPE	28	19	11	20

'WDR88 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.563 (Fisher's exact test), Q value = 1

Table S2118. Gene #265: 'WDR88 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
WDR88 MUTATED	4	1	1
WDR88 WILD-TYPE	33	15	30

'WDR88 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.656 (Fisher's exact test), Q value = 1

Table S2119. Gene #265: 'WDR88 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
WDR88 MUTATED	4	1	1
WDR88 WILD-TYPE	34	19	25

'WDR88 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.566 (Fisher's exact test), Q value = 1

Table S2120. Gene #265: 'WDR88 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
WDR88 MUTATED	1	1	4
WDR88 WILD-TYPE	26	18	34

'PSME4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.212 (Fisher's exact test), Q value = 1

Table S2121. Gene #266: 'PSME4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
PSME4 MUTATED	1	3	4
PSME4 WILD-TYPE	23	42	17

'PSME4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0925 (Fisher's exact test), Q value = 1

Table S2122. Gene #266: 'PSME4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
PSME4 MUTATED	1	2	5
PSME4 WILD-TYPE	30	33	19

'PSME4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.56 (Fisher's exact test), Q value = 1

Table S2123. Gene #266: 'PSME4 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
PSME4 MUTATED	5	1	2
PSME4 WILD-TYPE	35	24	17

'PSME4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.11 (Fisher's exact test), Q value = 1

Table S2124. Gene #266: 'PSME4 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
PSME4 MUTATED	1	2	5
PSME4 WILD-TYPE	0	29	47

'PSME4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.663 (Fisher's exact test), Q value = 1

Table S2125. Gene #266: 'PSME4 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
PSME4 MUTATED	3	1	2	2
PSME4 WILD-TYPE	28	19	9	20

'PSME4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.705 (Fisher's exact test), Q value = 1

Table S2126. Gene #266: 'PSME4 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
PSME4 MUTATED	4	2	2
PSME4 WILD-TYPE	33	14	29

'PSME4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2127. Gene #266: 'PSME4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
PSME4 MUTATED	4	2	2
PSME4 WILD-TYPE	34	18	24

'PSME4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S2128. Gene #266: 'PSME4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
PSME4 MUTATED	2	2	4
PSME4 WILD-TYPE	25	17	34

'TMC7 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2129. Gene #267: 'TMC7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
TMC7 MUTATED	1	2	1
TMC7 WILD-TYPE	23	43	20

'TMC7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.827 (Fisher's exact test), Q value = 1

Table S2130. Gene #267: 'TMC7 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
TMC7 MUTATED	2	1	1
TMC7 WILD-TYPE	29	34	23

'TMC7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.441 (Fisher's exact test), Q value = 1

Table S2131. Gene #267: 'TMC7 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
TMC7 MUTATED	3	0	1
TMC7 WILD-TYPE	37	25	18

'TMC7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0639 (Fisher's exact test), Q value = 1

Table S2132. Gene #267: 'TMC7 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
TMC7 MUTATED	1	1	2
TMC7 WILD-TYPE	0	30	50

'TMC7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2133. Gene #267: 'TMC7 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
TMC7 MUTATED	2	1	0	1
TMC7 WILD-TYPE	29	19	11	21

'TMC7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S2134. Gene #267: 'TMC7 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
TMC7 MUTATED	2	1	1
TMC7 WILD-TYPE	35	15	30

'TMC7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2135. Gene #267: 'TMC7 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
TMC7 MUTATED	2	1	1
TMC7 WILD-TYPE	36	19	25

'TMC7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S2136. Gene #267: 'TMC7 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
TMC7 MUTATED	1	1	2
TMC7 WILD-TYPE	26	18	36

'FTH1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.798 (Fisher's exact test), Q value = 1

Table S2137. Gene #268: 'FTH1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
FTH1 MUTATED	1	1	1
FTH1 WILD-TYPE	23	44	20

'FTH1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.621 (Fisher's exact test), Q value = 1

Table S2138. Gene #268: 'FTH1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
FTH1 MUTATED	2	1	0
FTH1 WILD-TYPE	29	34	24

'FTH1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.596 (Fisher's exact test), Q value = 1

Table S2139. Gene #268: 'FTH1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
FTH1 MUTATED	2	0	1
FTH1 WILD-TYPE	38	25	18

'FTH1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S2140. Gene #268: 'FTH1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
FTH1 MUTATED	0	1	2
FTH1 WILD-TYPE	1	30	50

'FTH1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2141. Gene #268: 'FTH1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
FTH1 MUTATED	1	1	0	1
FTH1 WILD-TYPE	30	19	11	21

'FTH1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.783 (Fisher's exact test), Q value = 1

Table S2142. Gene #268: 'FTH1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
FTH1 MUTATED	1	1	1
FTH1 WILD-TYPE	36	15	30

'FTH1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2143. Gene #268: 'FTH1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
FTH1 MUTATED	1	1	1
FTH1 WILD-TYPE	37	19	25

'FTH1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S2144. Gene #268: 'FTH1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
FTH1 MUTATED	1	1	1
FTH1 WILD-TYPE	26	18	37

'MRPS5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.747 (Fisher's exact test), Q value = 1

Table S2145. Gene #269: 'MRPS5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
MRPS5 MUTATED	1	3	2
MRPS5 WILD-TYPE	23	42	19

'MRPS5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.435 (Fisher's exact test), Q value = 1

Table S2146. Gene #269: 'MRPS5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
MRPS5 MUTATED	1	2	3
MRPS5 WILD-TYPE	30	33	21

'MRPS5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.861 (Fisher's exact test), Q value = 1

Table S2147. Gene #269: 'MRPS5 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
MRPS5 MUTATED	4	1	1
MRPS5 WILD-TYPE	36	24	18

'MRPS5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.095 (Fisher's exact test), Q value = 1

Table S2148. Gene #269: 'MRPS5 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
MRPS5 MUTATED	1	2	3
MRPS5 WILD-TYPE	0	29	49

'MRPS5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.734 (Fisher's exact test), Q value = 1

Table S2149. Gene #269: 'MRPS5 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
MRPS5 MUTATED	3	2	0	1
MRPS5 WILD-TYPE	28	18	11	21

'MRPS5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S2150. Gene #269: 'MRPS5 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
MRPS5 MUTATED	3	1	2
MRPS5 WILD-TYPE	34	15	29

'MRPS5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.758 (Fisher's exact test), Q value = 1

Table S2151. Gene #269: 'MRPS5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
MRPS5 MUTATED	3	2	1
MRPS5 WILD-TYPE	35	18	25

'MRPS5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S2152. Gene #269: 'MRPS5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
MRPS5 MUTATED	2	1	3
MRPS5 WILD-TYPE	25	18	35

'RAI1 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2153. Gene #270: 'RAI1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
RAI1 MUTATED	2	4	2
RAI1 WILD-TYPE	22	41	19

'RAI1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2154. Gene #270: 'RAI1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
RAI1 MUTATED	3	3	2
RAI1 WILD-TYPE	28	32	22

'RAI1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.801 (Fisher's exact test), Q value = 1

Table S2155. Gene #270: 'RAI1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
RAI1 MUTATED	3	3	2
RAI1 WILD-TYPE	37	22	17

'RAI1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0429 (Fisher's exact test), Q value = 1

Table S2156. Gene #270: 'RAI1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
RAI1 MUTATED	1	4	3
RAI1 WILD-TYPE	0	27	49

Figure S166. Get High-res Image Gene #270: 'RAI1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'RAI1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.779 (Fisher's exact test), Q value = 1

Table S2157. Gene #270: 'RAI1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
RAI1 MUTATED	2	3	1	2
RAI1 WILD-TYPE	29	17	10	20

'RAI1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.546 (Fisher's exact test), Q value = 1

Table S2158. Gene #270: 'RAI1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
RAI1 MUTATED	2	2	4
RAI1 WILD-TYPE	35	14	27

'RAI1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.244 (Fisher's exact test), Q value = 1

Table S2159. Gene #270: 'RAI1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
RAI1 MUTATED	2	4	2
RAI1 WILD-TYPE	36	16	24

'RAI1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.447 (Fisher's exact test), Q value = 1

Table S2160. Gene #270: 'RAI1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
RAI1 MUTATED	4	2	2
RAI1 WILD-TYPE	23	17	36

'RUNX1T1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.797 (Fisher's exact test), Q value = 1

Table S2161. Gene #271: 'RUNX1T1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
RUNX1T1 MUTATED	3	4	1
RUNX1T1 WILD-TYPE	21	41	20

'RUNX1T1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.293 (Fisher's exact test), Q value = 1

Table S2162. Gene #271: 'RUNX1T1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
RUNX1T1 MUTATED	5	2	1
RUNX1T1 WILD-TYPE	26	33	23

'RUNX1T1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.39 (Fisher's exact test), Q value = 1

Table S2163. Gene #271: 'RUNX1T1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
RUNX1T1 MUTATED	6	1	1
RUNX1T1 WILD-TYPE	34	24	18

'RUNX1T1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.11 (Fisher's exact test), Q value = 1

Table S2164. Gene #271: 'RUNX1T1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
RUNX1T1 MUTATED	1	2	5
RUNX1T1 WILD-TYPE	0	29	47

'RUNX1T1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.23 (Fisher's exact test), Q value = 1

Table S2165. Gene #271: 'RUNX1T1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
RUNX1T1 MUTATED	5	2	1	0
RUNX1T1 WILD-TYPE	26	18	10	22

'RUNX1T1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S2166. Gene #271: 'RUNX1T1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
RUNX1T1 MUTATED	4	1	3
RUNX1T1 WILD-TYPE	33	15	28

'RUNX1T1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.507 (Fisher's exact test), Q value = 1

Table S2167. Gene #271: 'RUNX1T1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
RUNX1T1 MUTATED	5	2	1
RUNX1T1 WILD-TYPE	33	18	25

'RUNX1T1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.707 (Fisher's exact test), Q value = 1

Table S2168. Gene #271: 'RUNX1T1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
RUNX1T1 MUTATED	2	1	5
RUNX1T1 WILD-TYPE	25	18	33

'CCDC130 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.352 (Fisher's exact test), Q value = 1

Table S2169. Gene #272: 'CCDC130 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
CCDC130 MUTATED	0	3	2
CCDC130 WILD-TYPE	24	42	19

'CCDC130 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.119 (Fisher's exact test), Q value = 1

Table S2170. Gene #272: 'CCDC130 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
CCDC130 MUTATED	0	2	3
CCDC130 WILD-TYPE	31	33	21

'CCDC130 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.5 (Fisher's exact test), Q value = 1

Table S2171. Gene #272: 'CCDC130 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
CCDC130 MUTATED	4	1	0
CCDC130 WILD-TYPE	36	24	19

'CCDC130 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0229 (Fisher's exact test), Q value = 1

Table S2172. Gene #272: 'CCDC130 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
CCDC130 MUTATED	1	0	4
CCDC130 WILD-TYPE	0	31	48

Figure S167. Get High-res Image Gene #272: 'CCDC130 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'CCDC130 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0335 (Fisher's exact test), Q value = 1

Table S2173. Gene #272: 'CCDC130 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
CCDC130 MUTATED	0	1	0	4
CCDC130 WILD-TYPE	31	19	11	18

Figure S168. Get High-res Image Gene #272: 'CCDC130 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

'CCDC130 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.715 (Fisher's exact test), Q value = 1

Table S2174. Gene #272: 'CCDC130 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
CCDC130 MUTATED	3	0	2
CCDC130 WILD-TYPE	34	16	29

'CCDC130 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.71 (Fisher's exact test), Q value = 1

Table S2175. Gene #272: 'CCDC130 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
CCDC130 MUTATED	2	2	1
CCDC130 WILD-TYPE	36	18	25

'CCDC130 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.603 (Fisher's exact test), Q value = 1

Table S2176. Gene #272: 'CCDC130 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
CCDC130 MUTATED	2	0	3
CCDC130 WILD-TYPE	25	19	35

'ADAL MUTATION STATUS' versus 'CN_CNMF'

P value = 0.671 (Fisher's exact test), Q value = 1

Table S2177. Gene #273: 'ADAL MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
ADAL MUTATED	0	3	1
ADAL WILD-TYPE	24	42	20

'ADAL MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.557 (Fisher's exact test), Q value = 1

Table S2178. Gene #273: 'ADAL MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
ADAL MUTATED	2	2	0
ADAL WILD-TYPE	29	33	24

'ADAL MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.795 (Fisher's exact test), Q value = 1

Table S2179. Gene #273: 'ADAL MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
ADAL MUTATED	1	1	1
ADAL WILD-TYPE	39	24	18

'ADAL MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.569 (Fisher's exact test), Q value = 1

Table S2180. Gene #273: 'ADAL MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
ADAL MUTATED	0	2	1
ADAL WILD-TYPE	1	29	51

'ADAL MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.426 (Fisher's exact test), Q value = 1

Table S2181. Gene #273: 'ADAL MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
ADAL MUTATED	1	2	0	0
ADAL WILD-TYPE	30	18	11	22

'ADAL MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.591 (Fisher's exact test), Q value = 1

Table S2182. Gene #273: 'ADAL MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
ADAL MUTATED	1	0	2
ADAL WILD-TYPE	36	16	29

'ADAL MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.235 (Fisher's exact test), Q value = 1

Table S2183. Gene #273: 'ADAL MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
ADAL MUTATED	1	2	0
ADAL WILD-TYPE	37	18	26

'ADAL MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.456 (Fisher's exact test), Q value = 1

Table S2184. Gene #273: 'ADAL MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
ADAL MUTATED	2	0	1
ADAL WILD-TYPE	25	19	37

'TWISTNB MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2185. Gene #274: 'TWISTNB MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
TWISTNB MUTATED	1	3	1
TWISTNB WILD-TYPE	23	42	20

'TWISTNB MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.304 (Fisher's exact test), Q value = 1

Table S2186. Gene #274: 'TWISTNB MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
TWISTNB MUTATED	1	1	3
TWISTNB WILD-TYPE	30	34	21

'TWISTNB MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.245 (Fisher's exact test), Q value = 1

Table S2187. Gene #274: 'TWISTNB MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
TWISTNB MUTATED	4	0	1
TWISTNB WILD-TYPE	36	25	18

'TWISTNB MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.065 (Fisher's exact test), Q value = 1

Table S2188. Gene #274: 'TWISTNB MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
TWISTNB MUTATED	1	1	3
TWISTNB WILD-TYPE	0	30	49

'TWISTNB MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.679 (Fisher's exact test), Q value = 1

Table S2189. Gene #274: 'TWISTNB MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
TWISTNB MUTATED	1	2	1	1
TWISTNB WILD-TYPE	30	18	10	21

'TWISTNB MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.201 (Fisher's exact test), Q value = 1

Table S2190. Gene #274: 'TWISTNB MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
TWISTNB MUTATED	1	0	4
TWISTNB WILD-TYPE	36	16	27

'TWISTNB MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.509 (Fisher's exact test), Q value = 1

Table S2191. Gene #274: 'TWISTNB MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
TWISTNB MUTATED	1	2	2
TWISTNB WILD-TYPE	37	18	24

'TWISTNB MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.433 (Fisher's exact test), Q value = 1

Table S2192. Gene #274: 'TWISTNB MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
TWISTNB MUTATED	3	1	1
TWISTNB WILD-TYPE	24	18	37

'CSNK1G3 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2193. Gene #275: 'CSNK1G3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
CSNK1G3 MUTATED	1	3	1
CSNK1G3 WILD-TYPE	23	42	20

'CSNK1G3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.176 (Fisher's exact test), Q value = 1

Table S2194. Gene #275: 'CSNK1G3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
CSNK1G3 MUTATED	0	4	1
CSNK1G3 WILD-TYPE	31	31	23

'CSNK1G3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.301 (Fisher's exact test), Q value = 1

Table S2195. Gene #275: 'CSNK1G3 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
CSNK1G3 MUTATED	1	3	1
CSNK1G3 WILD-TYPE	39	22	18

'CSNK1G3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.395 (Fisher's exact test), Q value = 1

Table S2196. Gene #275: 'CSNK1G3 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
CSNK1G3 MUTATED	0	3	2
CSNK1G3 WILD-TYPE	1	28	50

'CSNK1G3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.123 (Fisher's exact test), Q value = 1

Table S2197. Gene #275: 'CSNK1G3 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
CSNK1G3 MUTATED	0	1	1	3
CSNK1G3 WILD-TYPE	31	19	10	19

'CSNK1G3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.501 (Fisher's exact test), Q value = 1

Table S2198. Gene #275: 'CSNK1G3 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
CSNK1G3 MUTATED	1	1	3
CSNK1G3 WILD-TYPE	36	15	28

'CSNK1G3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.509 (Fisher's exact test), Q value = 1

Table S2199. Gene #275: 'CSNK1G3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
CSNK1G3 MUTATED	1	2	2
CSNK1G3 WILD-TYPE	37	18	24

'CSNK1G3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.433 (Fisher's exact test), Q value = 1

Table S2200. Gene #275: 'CSNK1G3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
CSNK1G3 MUTATED	3	1	1
CSNK1G3 WILD-TYPE	24	18	37

'PLCZ1 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2201. Gene #276: 'PLCZ1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
PLCZ1 MUTATED	1	2	1
PLCZ1 WILD-TYPE	23	43	20

'PLCZ1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.674 (Fisher's exact test), Q value = 1

Table S2202. Gene #276: 'PLCZ1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
PLCZ1 MUTATED	1	1	2
PLCZ1 WILD-TYPE	30	34	22

'PLCZ1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0412 (Fisher's exact test), Q value = 1

Table S2203. Gene #276: 'PLCZ1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
PLCZ1 MUTATED	1	0	3
PLCZ1 WILD-TYPE	39	25	16

Figure S169. Get High-res Image Gene #276: 'PLCZ1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

'PLCZ1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.645 (Fisher's exact test), Q value = 1

Table S2204. Gene #276: 'PLCZ1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
PLCZ1 MUTATED	0	2	2
PLCZ1 WILD-TYPE	1	29	50

'PLCZ1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.894 (Fisher's exact test), Q value = 1

Table S2205. Gene #276: 'PLCZ1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
PLCZ1 MUTATED	1	1	1	1
PLCZ1 WILD-TYPE	30	19	10	21

'PLCZ1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S2206. Gene #276: 'PLCZ1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
PLCZ1 MUTATED	2	1	1
PLCZ1 WILD-TYPE	35	15	30

'PLCZ1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.811 (Fisher's exact test), Q value = 1

Table S2207. Gene #276: 'PLCZ1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
PLCZ1 MUTATED	1	1	2
PLCZ1 WILD-TYPE	37	19	24

'PLCZ1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S2208. Gene #276: 'PLCZ1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
PLCZ1 MUTATED	1	1	2
PLCZ1 WILD-TYPE	26	18	36

'CDC25A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.798 (Fisher's exact test), Q value = 1

Table S2209. Gene #277: 'CDC25A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
CDC25A MUTATED	1	1	1
CDC25A WILD-TYPE	23	44	20

'CDC25A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2210. Gene #277: 'CDC25A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
CDC25A MUTATED	1	1	1
CDC25A WILD-TYPE	30	34	23

'CDC25A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.596 (Fisher's exact test), Q value = 1

Table S2211. Gene #277: 'CDC25A MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
CDC25A MUTATED	2	0	1
CDC25A WILD-TYPE	38	25	18

'CDC25A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S2212. Gene #277: 'CDC25A MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
CDC25A MUTATED	0	1	2
CDC25A WILD-TYPE	1	30	50

'CDC25A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.652 (Fisher's exact test), Q value = 1

Table S2213. Gene #277: 'CDC25A MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
CDC25A MUTATED	1	0	1	1
CDC25A WILD-TYPE	30	20	10	21

'CDC25A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.41 (Fisher's exact test), Q value = 1

Table S2214. Gene #277: 'CDC25A MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
CDC25A MUTATED	2	1	0
CDC25A WILD-TYPE	35	15	31

'CDC25A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.793 (Fisher's exact test), Q value = 1

Table S2215. Gene #277: 'CDC25A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
CDC25A MUTATED	2	0	1
CDC25A WILD-TYPE	36	20	25

'CDC25A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.596 (Fisher's exact test), Q value = 1

Table S2216. Gene #277: 'CDC25A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
CDC25A MUTATED	0	1	2
CDC25A WILD-TYPE	27	18	36

'UNC5D MUTATION STATUS' versus 'CN_CNMF'

P value = 0.716 (Fisher's exact test), Q value = 1

Table S2217. Gene #278: 'UNC5D MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
UNC5D MUTATED	1	5	2
UNC5D WILD-TYPE	23	40	19

'UNC5D MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.895 (Fisher's exact test), Q value = 1

Table S2218. Gene #278: 'UNC5D MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
UNC5D MUTATED	2	4	2
UNC5D WILD-TYPE	29	31	22

'UNC5D MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.235 (Fisher's exact test), Q value = 1

Table S2219. Gene #278: 'UNC5D MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
UNC5D MUTATED	4	4	0
UNC5D WILD-TYPE	36	21	19

'UNC5D MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.138 (Fisher's exact test), Q value = 1

Table S2220. Gene #278: 'UNC5D MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
UNC5D MUTATED	1	3	4
UNC5D WILD-TYPE	0	28	48

'UNC5D MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.339 (Fisher's exact test), Q value = 1

Table S2221. Gene #278: 'UNC5D MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
UNC5D MUTATED	2	4	0	2
UNC5D WILD-TYPE	29	16	11	20

'UNC5D MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.232 (Fisher's exact test), Q value = 1

Table S2222. Gene #278: 'UNC5D MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
UNC5D MUTATED	3	0	5
UNC5D WILD-TYPE	34	16	26

'UNC5D MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.244 (Fisher's exact test), Q value = 1

Table S2223. Gene #278: 'UNC5D MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
UNC5D MUTATED	2	4	2
UNC5D WILD-TYPE	36	16	24

'UNC5D MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.124 (Fisher's exact test), Q value = 1

Table S2224. Gene #278: 'UNC5D MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
UNC5D MUTATED	5	0	3
UNC5D WILD-TYPE	22	19	35

'KRTAP5-7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0715 (Fisher's exact test), Q value = 1

Table S2225. Gene #279: 'KRTAP5-7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
KRTAP5-7 MUTATED	1	0	2
KRTAP5-7 WILD-TYPE	23	45	19

'KRTAP5-7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.361 (Fisher's exact test), Q value = 1

Table S2226. Gene #279: 'KRTAP5-7 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
KRTAP5-7 MUTATED	2	0	1
KRTAP5-7 WILD-TYPE	29	35	23

'KRTAP5-7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.314 (Fisher's exact test), Q value = 1

Table S2227. Gene #279: 'KRTAP5-7 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
KRTAP5-7 MUTATED	3	0	0
KRTAP5-7 WILD-TYPE	37	25	19

'KRTAP5-7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.315 (Fisher's exact test), Q value = 1

Table S2228. Gene #279: 'KRTAP5-7 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
KRTAP5-7 MUTATED	0	0	3
KRTAP5-7 WILD-TYPE	1	31	49

'KRTAP5-7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.749 (Fisher's exact test), Q value = 1

Table S2229. Gene #279: 'KRTAP5-7 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
KRTAP5-7 MUTATED	2	1	0	0
KRTAP5-7 WILD-TYPE	29	19	11	22

'KRTAP5-7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S2230. Gene #279: 'KRTAP5-7 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
KRTAP5-7 MUTATED	2	0	1
KRTAP5-7 WILD-TYPE	35	16	30

'KRTAP5-7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.601 (Fisher's exact test), Q value = 1

Table S2231. Gene #279: 'KRTAP5-7 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
KRTAP5-7 MUTATED	2	1	0
KRTAP5-7 WILD-TYPE	36	19	26

'KRTAP5-7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.795 (Fisher's exact test), Q value = 1

Table S2232. Gene #279: 'KRTAP5-7 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
KRTAP5-7 MUTATED	1	0	2
KRTAP5-7 WILD-TYPE	26	19	36

'CPSF3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.428 (Fisher's exact test), Q value = 1

Table S2233. Gene #280: 'CPSF3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
CPSF3 MUTATED	0	3	0
CPSF3 WILD-TYPE	24	42	21

'CPSF3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.111 (Fisher's exact test), Q value = 1

Table S2234. Gene #280: 'CPSF3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
CPSF3 MUTATED	0	3	0
CPSF3 WILD-TYPE	31	32	24

'CPSF3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.139 (Fisher's exact test), Q value = 1

Table S2235. Gene #280: 'CPSF3 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
CPSF3 MUTATED	0	2	1
CPSF3 WILD-TYPE	40	23	18

'CPSF3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0829 (Fisher's exact test), Q value = 1

Table S2236. Gene #280: 'CPSF3 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
CPSF3 MUTATED	0	3	0
CPSF3 WILD-TYPE	1	28	52

'CPSF3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0939 (Fisher's exact test), Q value = 1

Table S2237. Gene #280: 'CPSF3 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
CPSF3 MUTATED	0	2	1	0
CPSF3 WILD-TYPE	31	18	10	22

'CPSF3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.217 (Fisher's exact test), Q value = 1

Table S2238. Gene #280: 'CPSF3 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
CPSF3 MUTATED	0	1	2
CPSF3 WILD-TYPE	37	15	29

'CPSF3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0911 (Fisher's exact test), Q value = 1

Table S2239. Gene #280: 'CPSF3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
CPSF3 MUTATED	0	2	1
CPSF3 WILD-TYPE	38	18	25

'CPSF3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.228 (Fisher's exact test), Q value = 1

Table S2240. Gene #280: 'CPSF3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
CPSF3 MUTATED	2	1	0
CPSF3 WILD-TYPE	25	18	38

'CA5A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.605 (Fisher's exact test), Q value = 1

Table S2241. Gene #281: 'CA5A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
CA5A MUTATED	0	2	1
CA5A WILD-TYPE	24	43	20

'CA5A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.778 (Fisher's exact test), Q value = 1

Table S2242. Gene #281: 'CA5A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
CA5A MUTATED	1	2	0
CA5A WILD-TYPE	30	33	24

'CA5A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2243. Gene #281: 'CA5A MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
CA5A MUTATED	2	1	0
CA5A WILD-TYPE	38	24	19

'CA5A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S2244. Gene #281: 'CA5A MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
CA5A MUTATED	0	1	2
CA5A WILD-TYPE	1	30	50

'CA5A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2245. Gene #281: 'CA5A MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
CA5A MUTATED	1	1	0	1
CA5A WILD-TYPE	30	19	11	21

'CA5A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S2246. Gene #281: 'CA5A MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
CA5A MUTATED	2	0	1
CA5A WILD-TYPE	35	16	30

'CA5A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2247. Gene #281: 'CA5A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
CA5A MUTATED	1	1	1
CA5A WILD-TYPE	37	19	25

'CA5A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S2248. Gene #281: 'CA5A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
CA5A MUTATED	1	1	1
CA5A WILD-TYPE	26	18	37

'TSFM MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2249. Gene #282: 'TSFM MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
TSFM MUTATED	1	2	1
TSFM WILD-TYPE	23	43	20

'TSFM MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2250. Gene #282: 'TSFM MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
TSFM MUTATED	1	2	1
TSFM WILD-TYPE	30	33	23

'TSFM MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.68 (Fisher's exact test), Q value = 1

Table S2251. Gene #282: 'TSFM MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
TSFM MUTATED	2	2	0
TSFM WILD-TYPE	38	23	19

'TSFM MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S2252. Gene #282: 'TSFM MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
TSFM MUTATED	0	1	3
TSFM WILD-TYPE	1	30	49

'TSFM MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.238 (Fisher's exact test), Q value = 1

Table S2253. Gene #282: 'TSFM MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
TSFM MUTATED	1	0	0	3
TSFM WILD-TYPE	30	20	11	19

'TSFM MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.829 (Fisher's exact test), Q value = 1

Table S2254. Gene #282: 'TSFM MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
TSFM MUTATED	2	0	2
TSFM WILD-TYPE	35	16	29

'TSFM MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2255. Gene #282: 'TSFM MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
TSFM MUTATED	2	1	1
TSFM WILD-TYPE	36	19	25

'TSFM MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.682 (Fisher's exact test), Q value = 1

Table S2256. Gene #282: 'TSFM MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
TSFM MUTATED	2	0	2
TSFM WILD-TYPE	25	19	36

'DNAJC12 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.121 (Fisher's exact test), Q value = 1

Table S2257. Gene #283: 'DNAJC12 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
DNAJC12 MUTATED	2	0	1
DNAJC12 WILD-TYPE	22	45	20

'DNAJC12 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.361 (Fisher's exact test), Q value = 1

Table S2258. Gene #283: 'DNAJC12 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
DNAJC12 MUTATED	2	0	1
DNAJC12 WILD-TYPE	29	35	23

'DNAJC12 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.314 (Fisher's exact test), Q value = 1

Table S2259. Gene #283: 'DNAJC12 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
DNAJC12 MUTATED	3	0	0
DNAJC12 WILD-TYPE	37	25	19

'DNAJC12 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.315 (Fisher's exact test), Q value = 1

Table S2260. Gene #283: 'DNAJC12 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
DNAJC12 MUTATED	0	0	3
DNAJC12 WILD-TYPE	1	31	49

'DNAJC12 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.212 (Fisher's exact test), Q value = 1

Table S2261. Gene #283: 'DNAJC12 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
DNAJC12 MUTATED	3	0	0	0
DNAJC12 WILD-TYPE	28	20	11	22

'DNAJC12 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.298 (Fisher's exact test), Q value = 1

Table S2262. Gene #283: 'DNAJC12 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
DNAJC12 MUTATED	3	0	0
DNAJC12 WILD-TYPE	34	16	31

'DNAJC12 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.324 (Fisher's exact test), Q value = 1

Table S2263. Gene #283: 'DNAJC12 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
DNAJC12 MUTATED	3	0	0
DNAJC12 WILD-TYPE	35	20	26

'DNAJC12 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.316 (Fisher's exact test), Q value = 1

Table S2264. Gene #283: 'DNAJC12 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
DNAJC12 MUTATED	0	0	3
DNAJC12 WILD-TYPE	27	19	35

'NPM2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.428 (Fisher's exact test), Q value = 1

Table S2265. Gene #284: 'NPM2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
NPM2 MUTATED	0	3	0
NPM2 WILD-TYPE	24	42	21

'NPM2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.111 (Fisher's exact test), Q value = 1

Table S2266. Gene #284: 'NPM2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
NPM2 MUTATED	0	3	0
NPM2 WILD-TYPE	31	32	24

'NPM2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0343 (Fisher's exact test), Q value = 1

Table S2267. Gene #284: 'NPM2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
NPM2 MUTATED	0	3	0
NPM2 WILD-TYPE	40	22	19

Figure S170. Get High-res Image Gene #284: 'NPM2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

'NPM2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0829 (Fisher's exact test), Q value = 1

Table S2268. Gene #284: 'NPM2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
NPM2 MUTATED	0	3	0
NPM2 WILD-TYPE	1	28	52

'NPM2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0939 (Fisher's exact test), Q value = 1

Table S2269. Gene #284: 'NPM2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
NPM2 MUTATED	0	2	1	0
NPM2 WILD-TYPE	31	18	10	22

'NPM2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.139 (Fisher's exact test), Q value = 1

Table S2270. Gene #284: 'NPM2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
NPM2 MUTATED	0	0	3
NPM2 WILD-TYPE	37	16	28

'NPM2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.235 (Fisher's exact test), Q value = 1

Table S2271. Gene #284: 'NPM2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
NPM2 MUTATED	1	2	0
NPM2 WILD-TYPE	37	18	26

'NPM2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0409 (Fisher's exact test), Q value = 1

Table S2272. Gene #284: 'NPM2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
NPM2 MUTATED	3	0	0
NPM2 WILD-TYPE	24	19	38

Figure S171. Get High-res Image Gene #284: 'NPM2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

'APOA1BP MUTATION STATUS' versus 'CN_CNMF'

P value = 0.707 (Fisher's exact test), Q value = 1

Table S2273. Gene #285: 'APOA1BP MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
APOA1BP MUTATED	1	2	2
APOA1BP WILD-TYPE	23	43	19

'APOA1BP MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.304 (Fisher's exact test), Q value = 1

Table S2274. Gene #285: 'APOA1BP MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
APOA1BP MUTATED	1	1	3
APOA1BP WILD-TYPE	30	34	21

'APOA1BP MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2275. Gene #285: 'APOA1BP MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
APOA1BP MUTATED	3	1	1
APOA1BP WILD-TYPE	37	24	18

'APOA1BP MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0428 (Fisher's exact test), Q value = 1

Table S2276. Gene #285: 'APOA1BP MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
APOA1BP MUTATED	1	2	2
APOA1BP WILD-TYPE	0	29	50

Figure S172. Get High-res Image Gene #285: 'APOA1BP MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'APOA1BP MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.45 (Fisher's exact test), Q value = 1

Table S2277. Gene #285: 'APOA1BP MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
APOA1BP MUTATED	2	2	1	0
APOA1BP WILD-TYPE	29	18	10	22

'APOA1BP MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S2278. Gene #285: 'APOA1BP MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
APOA1BP MUTATED	2	1	2
APOA1BP WILD-TYPE	35	15	29

'APOA1BP MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.852 (Fisher's exact test), Q value = 1

Table S2279. Gene #285: 'APOA1BP MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
APOA1BP MUTATED	3	1	1
APOA1BP WILD-TYPE	35	19	25

'APOA1BP MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S2280. Gene #285: 'APOA1BP MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
APOA1BP MUTATED	2	1	2
APOA1BP WILD-TYPE	25	18	36

'DDX10 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.169 (Fisher's exact test), Q value = 1

Table S2281. Gene #286: 'DDX10 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
DDX10 MUTATED	1	6	0
DDX10 WILD-TYPE	23	39	21

'DDX10 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.283 (Fisher's exact test), Q value = 1

Table S2282. Gene #286: 'DDX10 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
DDX10 MUTATED	1	5	1
DDX10 WILD-TYPE	30	30	23

'DDX10 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.402 (Fisher's exact test), Q value = 1

Table S2283. Gene #286: 'DDX10 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
DDX10 MUTATED	2	2	3
DDX10 WILD-TYPE	38	23	16

'DDX10 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0249 (Fisher's exact test), Q value = 1

Table S2284. Gene #286: 'DDX10 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
DDX10 MUTATED	1	4	2
DDX10 WILD-TYPE	0	27	50

Figure S173. Get High-res Image Gene #286: 'DDX10 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'DDX10 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0861 (Fisher's exact test), Q value = 1

Table S2285. Gene #286: 'DDX10 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
DDX10 MUTATED	0	3	1	3
DDX10 WILD-TYPE	31	17	10	19

'DDX10 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.215 (Fisher's exact test), Q value = 1

Table S2286. Gene #286: 'DDX10 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
DDX10 MUTATED	1	2	4
DDX10 WILD-TYPE	36	14	27

'DDX10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0783 (Fisher's exact test), Q value = 1

Table S2287. Gene #286: 'DDX10 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
DDX10 MUTATED	1	4	2
DDX10 WILD-TYPE	37	16	24

'DDX10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.194 (Fisher's exact test), Q value = 1

Table S2288. Gene #286: 'DDX10 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
DDX10 MUTATED	4	2	1
DDX10 WILD-TYPE	23	17	37

'USP4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.158 (Fisher's exact test), Q value = 1

Table S2289. Gene #287: 'USP4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
USP4 MUTATED	2	7	0
USP4 WILD-TYPE	22	38	21

'USP4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.263 (Fisher's exact test), Q value = 1

Table S2290. Gene #287: 'USP4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
USP4 MUTATED	2	6	1
USP4 WILD-TYPE	29	29	23

'USP4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.251 (Fisher's exact test), Q value = 1

Table S2291. Gene #287: 'USP4 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
USP4 MUTATED	4	1	4
USP4 WILD-TYPE	36	24	15

'USP4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0359 (Fisher's exact test), Q value = 1

Table S2292. Gene #287: 'USP4 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
USP4 MUTATED	1	5	3
USP4 WILD-TYPE	0	26	49

Figure S174. Get High-res Image Gene #287: 'USP4 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'USP4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.176 (Fisher's exact test), Q value = 1

Table S2293. Gene #287: 'USP4 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
USP4 MUTATED	2	3	3	1
USP4 WILD-TYPE	29	17	8	21

'USP4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.728 (Fisher's exact test), Q value = 1

Table S2294. Gene #287: 'USP4 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
USP4 MUTATED	3	2	4
USP4 WILD-TYPE	34	14	27

'USP4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.316 (Fisher's exact test), Q value = 1

Table S2295. Gene #287: 'USP4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
USP4 MUTATED	2	3	4
USP4 WILD-TYPE	36	17	22

'USP4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.318 (Fisher's exact test), Q value = 1

Table S2296. Gene #287: 'USP4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
USP4 MUTATED	4	3	2
USP4 WILD-TYPE	23	16	36

'SLC7A9 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2297. Gene #288: 'SLC7A9 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
SLC7A9 MUTATED	2	3	1
SLC7A9 WILD-TYPE	22	42	20

'SLC7A9 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2298. Gene #288: 'SLC7A9 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
SLC7A9 MUTATED	2	2	2
SLC7A9 WILD-TYPE	29	33	22

'SLC7A9 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.861 (Fisher's exact test), Q value = 1

Table S2299. Gene #288: 'SLC7A9 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
SLC7A9 MUTATED	4	1	1
SLC7A9 WILD-TYPE	36	24	18

'SLC7A9 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.048 (Fisher's exact test), Q value = 1

Table S2300. Gene #288: 'SLC7A9 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
SLC7A9 MUTATED	1	1	4
SLC7A9 WILD-TYPE	0	30	48

Figure S175. Get High-res Image Gene #288: 'SLC7A9 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'SLC7A9 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.785 (Fisher's exact test), Q value = 1

Table S2301. Gene #288: 'SLC7A9 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
SLC7A9 MUTATED	2	2	0	2
SLC7A9 WILD-TYPE	29	18	11	20

'SLC7A9 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.482 (Fisher's exact test), Q value = 1

Table S2302. Gene #288: 'SLC7A9 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
SLC7A9 MUTATED	4	0	2
SLC7A9 WILD-TYPE	33	16	29

'SLC7A9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.758 (Fisher's exact test), Q value = 1

Table S2303. Gene #288: 'SLC7A9 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
SLC7A9 MUTATED	3	2	1
SLC7A9 WILD-TYPE	35	18	25

'SLC7A9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.473 (Fisher's exact test), Q value = 1

Table S2304. Gene #288: 'SLC7A9 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
SLC7A9 MUTATED	2	0	4
SLC7A9 WILD-TYPE	25	19	34

'CDH10 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.38 (Fisher's exact test), Q value = 1

Table S2305. Gene #289: 'CDH10 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
CDH10 MUTATED	2	7	5
CDH10 WILD-TYPE	22	38	16

'CDH10 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.371 (Fisher's exact test), Q value = 1

Table S2306. Gene #289: 'CDH10 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
CDH10 MUTATED	4	4	6
CDH10 WILD-TYPE	27	31	18

'CDH10 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.738 (Fisher's exact test), Q value = 1

Table S2307. Gene #289: 'CDH10 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
CDH10 MUTATED	6	3	4
CDH10 WILD-TYPE	34	22	15

'CDH10 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.209 (Fisher's exact test), Q value = 1

Table S2308. Gene #289: 'CDH10 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
CDH10 MUTATED	1	4	8
CDH10 WILD-TYPE	0	27	44

'CDH10 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.18 (Fisher's exact test), Q value = 1

Table S2309. Gene #289: 'CDH10 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
CDH10 MUTATED	3	2	4	4
CDH10 WILD-TYPE	28	18	7	18

'CDH10 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.805 (Fisher's exact test), Q value = 1

Table S2310. Gene #289: 'CDH10 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
CDH10 MUTATED	6	3	4
CDH10 WILD-TYPE	31	13	27

'CDH10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.805 (Fisher's exact test), Q value = 1

Table S2311. Gene #289: 'CDH10 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
CDH10 MUTATED	5	4	4
CDH10 WILD-TYPE	33	16	22

'CDH10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S2312. Gene #289: 'CDH10 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
CDH10 MUTATED	4	3	6
CDH10 WILD-TYPE	23	16	32

'SNRNP35 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2313. Gene #290: 'SNRNP35 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
SNRNP35 MUTATED	1	3	1
SNRNP35 WILD-TYPE	23	42	20

'SNRNP35 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.254 (Fisher's exact test), Q value = 1

Table S2314. Gene #290: 'SNRNP35 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
SNRNP35 MUTATED	0	3	2
SNRNP35 WILD-TYPE	31	32	22

'SNRNP35 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2315. Gene #290: 'SNRNP35 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
SNRNP35 MUTATED	3	1	1
SNRNP35 WILD-TYPE	37	24	18

'SNRNP35 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0428 (Fisher's exact test), Q value = 1

Table S2316. Gene #290: 'SNRNP35 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
SNRNP35 MUTATED	1	2	2
SNRNP35 WILD-TYPE	0	29	50

Figure S176. Get High-res Image Gene #290: 'SNRNP35 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'SNRNP35 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.679 (Fisher's exact test), Q value = 1

Table S2317. Gene #290: 'SNRNP35 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
SNRNP35 MUTATED	1	2	1	1
SNRNP35 WILD-TYPE	30	18	10	21

'SNRNP35 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.598 (Fisher's exact test), Q value = 1

Table S2318. Gene #290: 'SNRNP35 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
SNRNP35 MUTATED	2	0	3
SNRNP35 WILD-TYPE	35	16	28

'SNRNP35 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.509 (Fisher's exact test), Q value = 1

Table S2319. Gene #290: 'SNRNP35 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
SNRNP35 MUTATED	1	2	2
SNRNP35 WILD-TYPE	37	18	24

'SNRNP35 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.433 (Fisher's exact test), Q value = 1

Table S2320. Gene #290: 'SNRNP35 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
SNRNP35 MUTATED	3	1	1
SNRNP35 WILD-TYPE	24	18	37

'SPINT1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.707 (Fisher's exact test), Q value = 1

Table S2321. Gene #291: 'SPINT1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
SPINT1 MUTATED	1	2	2
SPINT1 WILD-TYPE	23	43	19

'SPINT1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.849 (Fisher's exact test), Q value = 1

Table S2322. Gene #291: 'SPINT1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
SPINT1 MUTATED	1	2	2
SPINT1 WILD-TYPE	30	33	22

'SPINT1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.848 (Fisher's exact test), Q value = 1

Table S2323. Gene #291: 'SPINT1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
SPINT1 MUTATED	2	2	1
SPINT1 WILD-TYPE	38	23	18

'SPINT1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S2324. Gene #291: 'SPINT1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
SPINT1 MUTATED	0	2	3
SPINT1 WILD-TYPE	1	29	49

'SPINT1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2325. Gene #291: 'SPINT1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
SPINT1 MUTATED	2	1	1	1
SPINT1 WILD-TYPE	29	19	10	21

'SPINT1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S2326. Gene #291: 'SPINT1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
SPINT1 MUTATED	2	1	2
SPINT1 WILD-TYPE	35	15	29

'SPINT1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.71 (Fisher's exact test), Q value = 1

Table S2327. Gene #291: 'SPINT1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
SPINT1 MUTATED	2	2	1
SPINT1 WILD-TYPE	36	18	25

'SPINT1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S2328. Gene #291: 'SPINT1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
SPINT1 MUTATED	2	1	2
SPINT1 WILD-TYPE	25	18	36

'SMARCA2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.345 (Fisher's exact test), Q value = 1

Table S2329. Gene #292: 'SMARCA2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
SMARCA2 MUTATED	2	5	0
SMARCA2 WILD-TYPE	22	40	21

'SMARCA2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2330. Gene #292: 'SMARCA2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
SMARCA2 MUTATED	2	3	2
SMARCA2 WILD-TYPE	29	32	22

'SMARCA2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.402 (Fisher's exact test), Q value = 1

Table S2331. Gene #292: 'SMARCA2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
SMARCA2 MUTATED	2	2	3
SMARCA2 WILD-TYPE	38	23	16

'SMARCA2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0249 (Fisher's exact test), Q value = 1

Table S2332. Gene #292: 'SMARCA2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
SMARCA2 MUTATED	1	4	2
SMARCA2 WILD-TYPE	0	27	50

Figure S177. Get High-res Image Gene #292: 'SMARCA2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'SMARCA2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.467 (Fisher's exact test), Q value = 1

Table S2333. Gene #292: 'SMARCA2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
SMARCA2 MUTATED	1	2	1	3
SMARCA2 WILD-TYPE	30	18	10	19

'SMARCA2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.107 (Fisher's exact test), Q value = 1

Table S2334. Gene #292: 'SMARCA2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
SMARCA2 MUTATED	1	3	3
SMARCA2 WILD-TYPE	36	13	28

'SMARCA2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.202 (Fisher's exact test), Q value = 1

Table S2335. Gene #292: 'SMARCA2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
SMARCA2 MUTATED	1	3	3
SMARCA2 WILD-TYPE	37	17	23

'SMARCA2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.169 (Fisher's exact test), Q value = 1

Table S2336. Gene #292: 'SMARCA2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
SMARCA2 MUTATED	3	3	1
SMARCA2 WILD-TYPE	24	16	37

'RHOU MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0285 (Fisher's exact test), Q value = 1

Table S2337. Gene #293: 'RHOU MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
RHOU MUTATED	3	0	0
RHOU WILD-TYPE	21	45	21

Figure S178. Get High-res Image Gene #293: 'RHOU MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'RHOU MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0555 (Fisher's exact test), Q value = 1

Table S2338. Gene #293: 'RHOU MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
RHOU MUTATED	3	0	0
RHOU WILD-TYPE	28	35	24

'RHOU MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.314 (Fisher's exact test), Q value = 1

Table S2339. Gene #293: 'RHOU MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
RHOU MUTATED	3	0	0
RHOU WILD-TYPE	37	25	19

'RHOU MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.315 (Fisher's exact test), Q value = 1

Table S2340. Gene #293: 'RHOU MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
RHOU MUTATED	0	0	3
RHOU WILD-TYPE	1	31	49

'RHOU MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.212 (Fisher's exact test), Q value = 1

Table S2341. Gene #293: 'RHOU MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
RHOU MUTATED	3	0	0	0
RHOU WILD-TYPE	28	20	11	22

'RHOU MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.298 (Fisher's exact test), Q value = 1

Table S2342. Gene #293: 'RHOU MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
RHOU MUTATED	3	0	0
RHOU WILD-TYPE	34	16	31

'RHOU MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.324 (Fisher's exact test), Q value = 1

Table S2343. Gene #293: 'RHOU MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
RHOU MUTATED	3	0	0
RHOU WILD-TYPE	35	20	26

'RHOU MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.316 (Fisher's exact test), Q value = 1

Table S2344. Gene #293: 'RHOU MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
RHOU MUTATED	0	0	3
RHOU WILD-TYPE	27	19	35

'NOLC1 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2345. Gene #294: 'NOLC1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
NOLC1 MUTATED	1	2	1
NOLC1 WILD-TYPE	23	43	20

'NOLC1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2346. Gene #294: 'NOLC1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
NOLC1 MUTATED	1	2	1
NOLC1 WILD-TYPE	30	33	23

'NOLC1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0904 (Fisher's exact test), Q value = 1

Table S2347. Gene #294: 'NOLC1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
NOLC1 MUTATED	0	2	2
NOLC1 WILD-TYPE	40	23	17

'NOLC1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.185 (Fisher's exact test), Q value = 1

Table S2348. Gene #294: 'NOLC1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
NOLC1 MUTATED	0	3	1
NOLC1 WILD-TYPE	1	28	51

'NOLC1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0181 (Fisher's exact test), Q value = 1

Table S2349. Gene #294: 'NOLC1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
NOLC1 MUTATED	0	2	2	0
NOLC1 WILD-TYPE	31	18	9	22

Figure S179. Get High-res Image Gene #294: 'NOLC1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

'NOLC1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.668 (Fisher's exact test), Q value = 1

Table S2350. Gene #294: 'NOLC1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
NOLC1 MUTATED	1	1	2
NOLC1 WILD-TYPE	36	15	29

'NOLC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.107 (Fisher's exact test), Q value = 1

Table S2351. Gene #294: 'NOLC1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
NOLC1 MUTATED	0	2	2
NOLC1 WILD-TYPE	38	18	24

'NOLC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.813 (Fisher's exact test), Q value = 1

Table S2352. Gene #294: 'NOLC1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
NOLC1 MUTATED	2	1	1
NOLC1 WILD-TYPE	25	18	37

'CDK5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.605 (Fisher's exact test), Q value = 1

Table S2353. Gene #295: 'CDK5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
CDK5 MUTATED	0	2	1
CDK5 WILD-TYPE	24	43	20

'CDK5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.483 (Fisher's exact test), Q value = 1

Table S2354. Gene #295: 'CDK5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
CDK5 MUTATED	0	2	1
CDK5 WILD-TYPE	31	33	23

'CDK5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.44 (Fisher's exact test), Q value = 1

Table S2355. Gene #295: 'CDK5 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
CDK5 MUTATED	1	2	0
CDK5 WILD-TYPE	39	23	19

'CDK5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.569 (Fisher's exact test), Q value = 1

Table S2356. Gene #295: 'CDK5 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
CDK5 MUTATED	0	2	1
CDK5 WILD-TYPE	1	29	51

'CDK5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.426 (Fisher's exact test), Q value = 1

Table S2357. Gene #295: 'CDK5 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
CDK5 MUTATED	1	2	0	0
CDK5 WILD-TYPE	30	18	11	22

'CDK5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.591 (Fisher's exact test), Q value = 1

Table S2358. Gene #295: 'CDK5 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
CDK5 MUTATED	1	0	2
CDK5 WILD-TYPE	36	16	29

'CDK5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.601 (Fisher's exact test), Q value = 1

Table S2359. Gene #295: 'CDK5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
CDK5 MUTATED	2	1	0
CDK5 WILD-TYPE	36	19	26

'CDK5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.456 (Fisher's exact test), Q value = 1

Table S2360. Gene #295: 'CDK5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
CDK5 MUTATED	2	0	1
CDK5 WILD-TYPE	25	19	37

'HIRA MUTATION STATUS' versus 'CN_CNMF'

P value = 0.345 (Fisher's exact test), Q value = 1

Table S2361. Gene #296: 'HIRA MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
HIRA MUTATED	2	5	0
HIRA WILD-TYPE	22	40	21

'HIRA MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.694 (Fisher's exact test), Q value = 1

Table S2362. Gene #296: 'HIRA MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
HIRA MUTATED	2	4	1
HIRA WILD-TYPE	29	31	23

'HIRA MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0885 (Fisher's exact test), Q value = 1

Table S2363. Gene #296: 'HIRA MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
HIRA MUTATED	2	1	4
HIRA WILD-TYPE	38	24	15

'HIRA MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.172 (Fisher's exact test), Q value = 1

Table S2364. Gene #296: 'HIRA MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
HIRA MUTATED	0	5	2
HIRA WILD-TYPE	1	26	50

'HIRA MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.95 (Fisher's exact test), Q value = 1

Table S2365. Gene #296: 'HIRA MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
HIRA MUTATED	2	2	1	2
HIRA WILD-TYPE	29	18	10	20

'HIRA MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.672 (Fisher's exact test), Q value = 1

Table S2366. Gene #296: 'HIRA MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
HIRA MUTATED	2	2	3
HIRA WILD-TYPE	35	14	28

'HIRA MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.602 (Fisher's exact test), Q value = 1

Table S2367. Gene #296: 'HIRA MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
HIRA MUTATED	2	2	3
HIRA WILD-TYPE	36	18	23

'HIRA MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.676 (Fisher's exact test), Q value = 1

Table S2368. Gene #296: 'HIRA MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
HIRA MUTATED	3	2	2
HIRA WILD-TYPE	24	17	36

'GIGYF2 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2369. Gene #297: 'GIGYF2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
GIGYF2 MUTATED	2	5	2
GIGYF2 WILD-TYPE	22	40	19

'GIGYF2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2370. Gene #297: 'GIGYF2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
GIGYF2 MUTATED	3	4	2
GIGYF2 WILD-TYPE	28	31	22

'GIGYF2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.379 (Fisher's exact test), Q value = 1

Table S2371. Gene #297: 'GIGYF2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
GIGYF2 MUTATED	5	1	3
GIGYF2 WILD-TYPE	35	24	16

'GIGYF2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.751 (Fisher's exact test), Q value = 1

Table S2372. Gene #297: 'GIGYF2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
GIGYF2 MUTATED	0	4	5
GIGYF2 WILD-TYPE	1	27	47

'GIGYF2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.542 (Fisher's exact test), Q value = 1

Table S2373. Gene #297: 'GIGYF2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
GIGYF2 MUTATED	2	2	1	4
GIGYF2 WILD-TYPE	29	18	10	18

'GIGYF2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S2374. Gene #297: 'GIGYF2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
GIGYF2 MUTATED	4	2	3
GIGYF2 WILD-TYPE	33	14	28

'GIGYF2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2375. Gene #297: 'GIGYF2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
GIGYF2 MUTATED	4	2	3
GIGYF2 WILD-TYPE	34	18	23

'GIGYF2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.673 (Fisher's exact test), Q value = 1

Table S2376. Gene #297: 'GIGYF2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
GIGYF2 MUTATED	2	3	4
GIGYF2 WILD-TYPE	25	16	34

'KCNA4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.81 (Fisher's exact test), Q value = 1

Table S2377. Gene #298: 'KCNA4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
KCNA4 MUTATED	2	4	3
KCNA4 WILD-TYPE	22	41	18

'KCNA4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00191 (Fisher's exact test), Q value = 1

Table S2378. Gene #298: 'KCNA4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
KCNA4 MUTATED	1	1	7
KCNA4 WILD-TYPE	30	34	17

Figure S180. Get High-res Image Gene #298: 'KCNA4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'KCNA4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0901 (Fisher's exact test), Q value = 1

Table S2379. Gene #298: 'KCNA4 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
KCNA4 MUTATED	6	0	3
KCNA4 WILD-TYPE	34	25	16

'KCNA4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.128 (Fisher's exact test), Q value = 1

Table S2380. Gene #298: 'KCNA4 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
KCNA4 MUTATED	1	3	5
KCNA4 WILD-TYPE	0	28	47

'KCNA4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.542 (Fisher's exact test), Q value = 1

Table S2381. Gene #298: 'KCNA4 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
KCNA4 MUTATED	2	2	1	4
KCNA4 WILD-TYPE	29	18	10	18

'KCNA4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S2382. Gene #298: 'KCNA4 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
KCNA4 MUTATED	4	2	3
KCNA4 WILD-TYPE	33	14	28

'KCNA4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.604 (Fisher's exact test), Q value = 1

Table S2383. Gene #298: 'KCNA4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
KCNA4 MUTATED	3	2	4
KCNA4 WILD-TYPE	35	18	22

'KCNA4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.673 (Fisher's exact test), Q value = 1

Table S2384. Gene #298: 'KCNA4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
KCNA4 MUTATED	2	3	4
KCNA4 WILD-TYPE	25	16	34

'COL22A1 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2385. Gene #299: 'COL22A1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
COL22A1 MUTATED	3	5	2
COL22A1 WILD-TYPE	21	40	19

'COL22A1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.917 (Fisher's exact test), Q value = 1

Table S2386. Gene #299: 'COL22A1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
COL22A1 MUTATED	4	4	2
COL22A1 WILD-TYPE	27	31	22

'COL22A1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.56 (Fisher's exact test), Q value = 1

Table S2387. Gene #299: 'COL22A1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
COL22A1 MUTATED	5	4	1
COL22A1 WILD-TYPE	35	21	18

'COL22A1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.117 (Fisher's exact test), Q value = 1

Table S2388. Gene #299: 'COL22A1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
COL22A1 MUTATED	1	4	5
COL22A1 WILD-TYPE	0	27	47

'COL22A1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0495 (Fisher's exact test), Q value = 1

Table S2389. Gene #299: 'COL22A1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
COL22A1 MUTATED	3	6	0	1
COL22A1 WILD-TYPE	28	14	11	21

Figure S181. Get High-res Image Gene #299: 'COL22A1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

'COL22A1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0667 (Fisher's exact test), Q value = 1

Table S2390. Gene #299: 'COL22A1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
COL22A1 MUTATED	3	0	7
COL22A1 WILD-TYPE	34	16	24

'COL22A1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00473 (Fisher's exact test), Q value = 1

Table S2391. Gene #299: 'COL22A1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
COL22A1 MUTATED	4	6	0
COL22A1 WILD-TYPE	34	14	26

Figure S182. Get High-res Image Gene #299: 'COL22A1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

'COL22A1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0606 (Fisher's exact test), Q value = 1

Table S2392. Gene #299: 'COL22A1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
COL22A1 MUTATED	6	0	4
COL22A1 WILD-TYPE	21	19	34

'RBM43 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.555 (Fisher's exact test), Q value = 1

Table S2393. Gene #300: 'RBM43 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
RBM43 MUTATED	2	2	0
RBM43 WILD-TYPE	22	43	21

'RBM43 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.131 (Fisher's exact test), Q value = 1

Table S2394. Gene #300: 'RBM43 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
RBM43 MUTATED	3	0	1
RBM43 WILD-TYPE	28	35	23

'RBM43 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.795 (Fisher's exact test), Q value = 1

Table S2395. Gene #300: 'RBM43 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
RBM43 MUTATED	1	1	1
RBM43 WILD-TYPE	39	24	18

'RBM43 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S2396. Gene #300: 'RBM43 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
RBM43 MUTATED	0	1	2
RBM43 WILD-TYPE	1	30	50

'RBM43 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.857 (Fisher's exact test), Q value = 1

Table S2397. Gene #300: 'RBM43 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
RBM43 MUTATED	2	0	0	1
RBM43 WILD-TYPE	29	20	11	21

'RBM43 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.783 (Fisher's exact test), Q value = 1

Table S2398. Gene #300: 'RBM43 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
RBM43 MUTATED	1	1	1
RBM43 WILD-TYPE	36	15	30

'RBM43 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.793 (Fisher's exact test), Q value = 1

Table S2399. Gene #300: 'RBM43 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
RBM43 MUTATED	2	0	1
RBM43 WILD-TYPE	36	20	25

'RBM43 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S2400. Gene #300: 'RBM43 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
RBM43 MUTATED	1	1	1
RBM43 WILD-TYPE	26	18	37

'ZNF880 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.555 (Fisher's exact test), Q value = 1

Table S2401. Gene #301: 'ZNF880 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
ZNF880 MUTATED	2	2	0
ZNF880 WILD-TYPE	22	43	21

'ZNF880 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.827 (Fisher's exact test), Q value = 1

Table S2402. Gene #301: 'ZNF880 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
ZNF880 MUTATED	2	1	1
ZNF880 WILD-TYPE	29	34	23

'ZNF880 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2403. Gene #301: 'ZNF880 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
ZNF880 MUTATED	2	1	1
ZNF880 WILD-TYPE	38	24	18

'ZNF880 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.645 (Fisher's exact test), Q value = 1

Table S2404. Gene #301: 'ZNF880 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
ZNF880 MUTATED	0	2	2
ZNF880 WILD-TYPE	1	29	50

'ZNF880 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.561 (Fisher's exact test), Q value = 1

Table S2405. Gene #301: 'ZNF880 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
ZNF880 MUTATED	2	1	1	0
ZNF880 WILD-TYPE	29	19	10	22

'ZNF880 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S2406. Gene #301: 'ZNF880 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
ZNF880 MUTATED	2	1	1
ZNF880 WILD-TYPE	35	15	30

'ZNF880 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2407. Gene #301: 'ZNF880 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
ZNF880 MUTATED	2	1	1
ZNF880 WILD-TYPE	36	19	25

'ZNF880 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S2408. Gene #301: 'ZNF880 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
ZNF880 MUTATED	1	1	2
ZNF880 WILD-TYPE	26	18	36

'ACE MUTATION STATUS' versus 'CN_CNMF'

P value = 0.632 (Fisher's exact test), Q value = 1

Table S2409. Gene #302: 'ACE MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
ACE MUTATED	2	2	2
ACE WILD-TYPE	22	43	19

'ACE MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.375 (Fisher's exact test), Q value = 1

Table S2410. Gene #302: 'ACE MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
ACE MUTATED	2	1	3
ACE WILD-TYPE	29	34	21

'ACE MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.861 (Fisher's exact test), Q value = 1

Table S2411. Gene #302: 'ACE MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
ACE MUTATED	4	1	1
ACE WILD-TYPE	36	24	18

'ACE MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0126 (Fisher's exact test), Q value = 1

Table S2412. Gene #302: 'ACE MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
ACE MUTATED	1	0	5
ACE WILD-TYPE	0	31	47

Figure S183. Get High-res Image Gene #302: 'ACE MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'ACE MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.165 (Fisher's exact test), Q value = 1

Table S2413. Gene #302: 'ACE MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
ACE MUTATED	1	1	0	4
ACE WILD-TYPE	30	19	11	18

'ACE MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.482 (Fisher's exact test), Q value = 1

Table S2414. Gene #302: 'ACE MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
ACE MUTATED	4	0	2
ACE WILD-TYPE	33	16	29

'ACE MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.561 (Fisher's exact test), Q value = 1

Table S2415. Gene #302: 'ACE MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
ACE MUTATED	2	1	3
ACE WILD-TYPE	36	19	23

'ACE MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.566 (Fisher's exact test), Q value = 1

Table S2416. Gene #302: 'ACE MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
ACE MUTATED	1	1	4
ACE WILD-TYPE	26	18	34

'CDK8 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0836 (Fisher's exact test), Q value = 1

Table S2417. Gene #303: 'CDK8 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
CDK8 MUTATED	4	2	0
CDK8 WILD-TYPE	20	43	21

'CDK8 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0838 (Fisher's exact test), Q value = 1

Table S2418. Gene #303: 'CDK8 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
CDK8 MUTATED	3	0	3
CDK8 WILD-TYPE	28	35	21

'CDK8 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.755 (Fisher's exact test), Q value = 1

Table S2419. Gene #303: 'CDK8 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
CDK8 MUTATED	3	1	2
CDK8 WILD-TYPE	37	24	17

'CDK8 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.048 (Fisher's exact test), Q value = 1

Table S2420. Gene #303: 'CDK8 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
CDK8 MUTATED	1	1	4
CDK8 WILD-TYPE	0	30	48

Figure S184. Get High-res Image Gene #303: 'CDK8 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'CDK8 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.836 (Fisher's exact test), Q value = 1

Table S2421. Gene #303: 'CDK8 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
CDK8 MUTATED	3	1	0	2
CDK8 WILD-TYPE	28	19	11	20

'CDK8 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S2422. Gene #303: 'CDK8 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
CDK8 MUTATED	3	1	2
CDK8 WILD-TYPE	34	15	29

'CDK8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2423. Gene #303: 'CDK8 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
CDK8 MUTATED	3	1	2
CDK8 WILD-TYPE	35	19	24

'CDK8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.566 (Fisher's exact test), Q value = 1

Table S2424. Gene #303: 'CDK8 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
CDK8 MUTATED	1	1	4
CDK8 WILD-TYPE	26	18	34

'MGA MUTATION STATUS' versus 'CN_CNMF'

P value = 0.492 (Fisher's exact test), Q value = 1

Table S2425. Gene #304: 'MGA MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
MGA MUTATED	4	6	1
MGA WILD-TYPE	20	39	20

'MGA MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.721 (Fisher's exact test), Q value = 1

Table S2426. Gene #304: 'MGA MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
MGA MUTATED	5	4	2
MGA WILD-TYPE	26	31	22

'MGA MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.279 (Fisher's exact test), Q value = 1

Table S2427. Gene #304: 'MGA MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
MGA MUTATED	7	1	3
MGA WILD-TYPE	33	24	16

'MGA MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.137 (Fisher's exact test), Q value = 1

Table S2428. Gene #304: 'MGA MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
MGA MUTATED	1	3	7
MGA WILD-TYPE	0	28	45

'MGA MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.263 (Fisher's exact test), Q value = 1

Table S2429. Gene #304: 'MGA MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
MGA MUTATED	5	2	3	1
MGA WILD-TYPE	26	18	8	21

'MGA MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S2430. Gene #304: 'MGA MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
MGA MUTATED	5	2	4
MGA WILD-TYPE	32	14	27

'MGA MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.843 (Fisher's exact test), Q value = 1

Table S2431. Gene #304: 'MGA MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
MGA MUTATED	6	2	3
MGA WILD-TYPE	32	18	23

'MGA MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.842 (Fisher's exact test), Q value = 1

Table S2432. Gene #304: 'MGA MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
MGA MUTATED	3	2	6
MGA WILD-TYPE	24	17	32

'NUCB1 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2433. Gene #305: 'NUCB1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
NUCB1 MUTATED	1	3	1
NUCB1 WILD-TYPE	23	42	20

'NUCB1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.733 (Fisher's exact test), Q value = 1

Table S2434. Gene #305: 'NUCB1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
NUCB1 MUTATED	1	3	1
NUCB1 WILD-TYPE	30	32	23

'NUCB1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.245 (Fisher's exact test), Q value = 1

Table S2435. Gene #305: 'NUCB1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
NUCB1 MUTATED	4	0	1
NUCB1 WILD-TYPE	36	25	18

'NUCB1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.667 (Fisher's exact test), Q value = 1

Table S2436. Gene #305: 'NUCB1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
NUCB1 MUTATED	0	1	4
NUCB1 WILD-TYPE	1	30	48

'NUCB1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.419 (Fisher's exact test), Q value = 1

Table S2437. Gene #305: 'NUCB1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
NUCB1 MUTATED	1	1	0	3
NUCB1 WILD-TYPE	30	19	11	19

'NUCB1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.267 (Fisher's exact test), Q value = 1

Table S2438. Gene #305: 'NUCB1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
NUCB1 MUTATED	4	0	1
NUCB1 WILD-TYPE	33	16	30

'NUCB1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2439. Gene #305: 'NUCB1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
NUCB1 MUTATED	2	1	2
NUCB1 WILD-TYPE	36	19	24

'NUCB1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.708 (Fisher's exact test), Q value = 1

Table S2440. Gene #305: 'NUCB1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
NUCB1 MUTATED	1	2	2
NUCB1 WILD-TYPE	26	17	36

'PPIL6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.671 (Fisher's exact test), Q value = 1

Table S2441. Gene #306: 'PPIL6 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
PPIL6 MUTATED	0	3	1
PPIL6 WILD-TYPE	24	42	20

'PPIL6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.369 (Fisher's exact test), Q value = 1

Table S2442. Gene #306: 'PPIL6 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
PPIL6 MUTATED	0	2	2
PPIL6 WILD-TYPE	31	33	22

'PPIL6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.343 (Fisher's exact test), Q value = 1

Table S2443. Gene #306: 'PPIL6 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
PPIL6 MUTATED	1	1	2
PPIL6 WILD-TYPE	39	24	17

'PPIL6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.185 (Fisher's exact test), Q value = 1

Table S2444. Gene #306: 'PPIL6 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
PPIL6 MUTATED	0	3	1
PPIL6 WILD-TYPE	1	28	51

'PPIL6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0525 (Fisher's exact test), Q value = 1

Table S2445. Gene #306: 'PPIL6 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
PPIL6 MUTATED	0	1	2	1
PPIL6 WILD-TYPE	31	19	9	21

'PPIL6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.668 (Fisher's exact test), Q value = 1

Table S2446. Gene #306: 'PPIL6 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
PPIL6 MUTATED	1	1	2
PPIL6 WILD-TYPE	36	15	29

'PPIL6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.075 (Fisher's exact test), Q value = 1

Table S2447. Gene #306: 'PPIL6 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
PPIL6 MUTATED	0	1	3
PPIL6 WILD-TYPE	38	19	23

'PPIL6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.813 (Fisher's exact test), Q value = 1

Table S2448. Gene #306: 'PPIL6 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
PPIL6 MUTATED	2	1	1
PPIL6 WILD-TYPE	25	18	37

'FKBP7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.103 (Fisher's exact test), Q value = 1

Table S2449. Gene #307: 'FKBP7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
FKBP7 MUTATED	0	2	3
FKBP7 WILD-TYPE	24	43	18

'FKBP7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0282 (Fisher's exact test), Q value = 1

Table S2450. Gene #307: 'FKBP7 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
FKBP7 MUTATED	0	1	4
FKBP7 WILD-TYPE	31	34	20

Figure S185. Get High-res Image Gene #307: 'FKBP7 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'FKBP7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.255 (Fisher's exact test), Q value = 1

Table S2451. Gene #307: 'FKBP7 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
FKBP7 MUTATED	2	0	2
FKBP7 WILD-TYPE	38	25	17

'FKBP7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0639 (Fisher's exact test), Q value = 1

Table S2452. Gene #307: 'FKBP7 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
FKBP7 MUTATED	1	1	2
FKBP7 WILD-TYPE	0	30	50

'FKBP7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0525 (Fisher's exact test), Q value = 1

Table S2453. Gene #307: 'FKBP7 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
FKBP7 MUTATED	0	1	2	1
FKBP7 WILD-TYPE	31	19	9	21

'FKBP7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S2454. Gene #307: 'FKBP7 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
FKBP7 MUTATED	2	1	1
FKBP7 WILD-TYPE	35	15	30

'FKBP7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.075 (Fisher's exact test), Q value = 1

Table S2455. Gene #307: 'FKBP7 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
FKBP7 MUTATED	0	1	3
FKBP7 WILD-TYPE	38	19	23

'FKBP7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S2456. Gene #307: 'FKBP7 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
FKBP7 MUTATED	1	1	2
FKBP7 WILD-TYPE	26	18	36

'NTAN1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.805 (Fisher's exact test), Q value = 1

Table S2457. Gene #308: 'NTAN1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
NTAN1 MUTATED	1	3	0
NTAN1 WILD-TYPE	23	42	21

'NTAN1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2458. Gene #308: 'NTAN1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
NTAN1 MUTATED	1	2	1
NTAN1 WILD-TYPE	30	33	23

'NTAN1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.343 (Fisher's exact test), Q value = 1

Table S2459. Gene #308: 'NTAN1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
NTAN1 MUTATED	1	1	2
NTAN1 WILD-TYPE	39	24	17

'NTAN1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.645 (Fisher's exact test), Q value = 1

Table S2460. Gene #308: 'NTAN1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
NTAN1 MUTATED	0	2	2
NTAN1 WILD-TYPE	1	29	50

'NTAN1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.364 (Fisher's exact test), Q value = 1

Table S2461. Gene #308: 'NTAN1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
NTAN1 MUTATED	1	0	1	2
NTAN1 WILD-TYPE	30	20	10	20

'NTAN1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.315 (Fisher's exact test), Q value = 1

Table S2462. Gene #308: 'NTAN1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
NTAN1 MUTATED	1	2	1
NTAN1 WILD-TYPE	36	14	30

'NTAN1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.811 (Fisher's exact test), Q value = 1

Table S2463. Gene #308: 'NTAN1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
NTAN1 MUTATED	1	1	2
NTAN1 WILD-TYPE	37	19	24

'NTAN1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.436 (Fisher's exact test), Q value = 1

Table S2464. Gene #308: 'NTAN1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
NTAN1 MUTATED	1	2	1
NTAN1 WILD-TYPE	26	17	37

'PPP1R12C MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2465. Gene #309: 'PPP1R12C MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
PPP1R12C MUTATED	2	3	1
PPP1R12C WILD-TYPE	22	42	20

'PPP1R12C MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2466. Gene #309: 'PPP1R12C MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
PPP1R12C MUTATED	2	2	2
PPP1R12C WILD-TYPE	29	33	22

'PPP1R12C MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.345 (Fisher's exact test), Q value = 1

Table S2467. Gene #309: 'PPP1R12C MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
PPP1R12C MUTATED	2	1	3
PPP1R12C WILD-TYPE	38	24	16

'PPP1R12C MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.095 (Fisher's exact test), Q value = 1

Table S2468. Gene #309: 'PPP1R12C MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
PPP1R12C MUTATED	1	2	3
PPP1R12C WILD-TYPE	0	29	49

'PPP1R12C MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0404 (Fisher's exact test), Q value = 1

Table S2469. Gene #309: 'PPP1R12C MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
PPP1R12C MUTATED	2	1	3	0
PPP1R12C WILD-TYPE	29	19	8	22

Figure S186. Get High-res Image Gene #309: 'PPP1R12C MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

'PPP1R12C MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.74 (Fisher's exact test), Q value = 1

Table S2470. Gene #309: 'PPP1R12C MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
PPP1R12C MUTATED	2	2	2
PPP1R12C WILD-TYPE	35	14	29

'PPP1R12C MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.561 (Fisher's exact test), Q value = 1

Table S2471. Gene #309: 'PPP1R12C MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
PPP1R12C MUTATED	2	1	3
PPP1R12C WILD-TYPE	36	19	23

'PPP1R12C MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.662 (Fisher's exact test), Q value = 1

Table S2472. Gene #309: 'PPP1R12C MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
PPP1R12C MUTATED	1	2	3
PPP1R12C WILD-TYPE	26	17	35

'RAI2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.504 (Fisher's exact test), Q value = 1

Table S2473. Gene #310: 'RAI2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
RAI2 MUTATED	1	4	0
RAI2 WILD-TYPE	23	41	21

'RAI2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2474. Gene #310: 'RAI2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
RAI2 MUTATED	2	2	1
RAI2 WILD-TYPE	29	33	23

'RAI2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.5 (Fisher's exact test), Q value = 1

Table S2475. Gene #310: 'RAI2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
RAI2 MUTATED	4	1	0
RAI2 WILD-TYPE	36	24	19

'RAI2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.667 (Fisher's exact test), Q value = 1

Table S2476. Gene #310: 'RAI2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
RAI2 MUTATED	0	1	4
RAI2 WILD-TYPE	1	30	48

'RAI2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.858 (Fisher's exact test), Q value = 1

Table S2477. Gene #310: 'RAI2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
RAI2 MUTATED	3	1	0	1
RAI2 WILD-TYPE	28	19	11	21

'RAI2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.715 (Fisher's exact test), Q value = 1

Table S2478. Gene #310: 'RAI2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
RAI2 MUTATED	3	0	2
RAI2 WILD-TYPE	34	16	29

'RAI2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.852 (Fisher's exact test), Q value = 1

Table S2479. Gene #310: 'RAI2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
RAI2 MUTATED	3	1	1
RAI2 WILD-TYPE	35	19	25

'RAI2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.848 (Fisher's exact test), Q value = 1

Table S2480. Gene #310: 'RAI2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
RAI2 MUTATED	1	1	3
RAI2 WILD-TYPE	26	18	35

'SLAIN1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.428 (Fisher's exact test), Q value = 1

Table S2481. Gene #311: 'SLAIN1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
SLAIN1 MUTATED	0	3	0
SLAIN1 WILD-TYPE	24	42	21

'SLAIN1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.483 (Fisher's exact test), Q value = 1

Table S2482. Gene #311: 'SLAIN1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
SLAIN1 MUTATED	0	2	1
SLAIN1 WILD-TYPE	31	33	23

'SLAIN1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.795 (Fisher's exact test), Q value = 1

Table S2483. Gene #311: 'SLAIN1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
SLAIN1 MUTATED	1	1	1
SLAIN1 WILD-TYPE	39	24	18

'SLAIN1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00488 (Fisher's exact test), Q value = 1

Table S2484. Gene #311: 'SLAIN1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
SLAIN1 MUTATED	1	2	0
SLAIN1 WILD-TYPE	0	29	52

Figure S187. Get High-res Image Gene #311: 'SLAIN1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'SLAIN1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0252 (Fisher's exact test), Q value = 1

Table S2485. Gene #311: 'SLAIN1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
SLAIN1 MUTATED	0	3	0	0
SLAIN1 WILD-TYPE	31	17	11	22

Figure S188. Get High-res Image Gene #311: 'SLAIN1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

'SLAIN1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.139 (Fisher's exact test), Q value = 1

Table S2486. Gene #311: 'SLAIN1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
SLAIN1 MUTATED	0	0	3
SLAIN1 WILD-TYPE	37	16	28

'SLAIN1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.012 (Fisher's exact test), Q value = 1

Table S2487. Gene #311: 'SLAIN1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
SLAIN1 MUTATED	0	3	0
SLAIN1 WILD-TYPE	38	17	26

Figure S189. Get High-res Image Gene #311: 'SLAIN1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

'SLAIN1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0409 (Fisher's exact test), Q value = 1

Table S2488. Gene #311: 'SLAIN1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
SLAIN1 MUTATED	3	0	0
SLAIN1 WILD-TYPE	24	19	38

Figure S190. Get High-res Image Gene #311: 'SLAIN1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

'ACVR2A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.212 (Fisher's exact test), Q value = 1

Table S2489. Gene #312: 'ACVR2A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
ACVR2A MUTATED	0	5	1
ACVR2A WILD-TYPE	24	40	20

'ACVR2A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.435 (Fisher's exact test), Q value = 1

Table S2490. Gene #312: 'ACVR2A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
ACVR2A MUTATED	1	2	3
ACVR2A WILD-TYPE	30	33	21

'ACVR2A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.552 (Fisher's exact test), Q value = 1

Table S2491. Gene #312: 'ACVR2A MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
ACVR2A MUTATED	2	3	1
ACVR2A WILD-TYPE	38	22	18

'ACVR2A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.095 (Fisher's exact test), Q value = 1

Table S2492. Gene #312: 'ACVR2A MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
ACVR2A MUTATED	1	2	3
ACVR2A WILD-TYPE	0	29	49

'ACVR2A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0484 (Fisher's exact test), Q value = 1

Table S2493. Gene #312: 'ACVR2A MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
ACVR2A MUTATED	1	4	1	0
ACVR2A WILD-TYPE	30	16	10	22

Figure S191. Get High-res Image Gene #312: 'ACVR2A MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

'ACVR2A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0314 (Fisher's exact test), Q value = 1

Table S2494. Gene #312: 'ACVR2A MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
ACVR2A MUTATED	0	1	5
ACVR2A WILD-TYPE	37	15	26

Figure S192. Get High-res Image Gene #312: 'ACVR2A MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'ACVR2A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.358 (Fisher's exact test), Q value = 1

Table S2495. Gene #312: 'ACVR2A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
ACVR2A MUTATED	2	3	1
ACVR2A WILD-TYPE	36	17	25

'ACVR2A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.191 (Fisher's exact test), Q value = 1

Table S2496. Gene #312: 'ACVR2A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
ACVR2A MUTATED	4	1	1
ACVR2A WILD-TYPE	23	18	37

'NTF3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.707 (Fisher's exact test), Q value = 1

Table S2497. Gene #313: 'NTF3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
NTF3 MUTATED	1	2	2
NTF3 WILD-TYPE	23	43	19

'NTF3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.657 (Fisher's exact test), Q value = 1

Table S2498. Gene #313: 'NTF3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
NTF3 MUTATED	1	3	2
NTF3 WILD-TYPE	30	32	22

'NTF3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0974 (Fisher's exact test), Q value = 1

Table S2499. Gene #313: 'NTF3 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
NTF3 MUTATED	1	4	1
NTF3 WILD-TYPE	39	21	18

'NTF3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.248 (Fisher's exact test), Q value = 1

Table S2500. Gene #313: 'NTF3 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
NTF3 MUTATED	0	4	2
NTF3 WILD-TYPE	1	27	50

'NTF3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0484 (Fisher's exact test), Q value = 1

Table S2501. Gene #313: 'NTF3 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
NTF3 MUTATED	1	4	1	0
NTF3 WILD-TYPE	30	16	10	22

Figure S193. Get High-res Image Gene #313: 'NTF3 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

'NTF3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.335 (Fisher's exact test), Q value = 1

Table S2502. Gene #313: 'NTF3 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
NTF3 MUTATED	2	0	4
NTF3 WILD-TYPE	35	16	27

'NTF3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.865 (Fisher's exact test), Q value = 1

Table S2503. Gene #313: 'NTF3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
NTF3 MUTATED	2	2	2
NTF3 WILD-TYPE	36	18	24

'NTF3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.129 (Fisher's exact test), Q value = 1

Table S2504. Gene #313: 'NTF3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
NTF3 MUTATED	4	0	2
NTF3 WILD-TYPE	23	19	36

'C9ORF69 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2505. Gene #314: 'C9ORF69 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
C9ORF69 MUTATED	1	2	1
C9ORF69 WILD-TYPE	23	43	20

'C9ORF69 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.674 (Fisher's exact test), Q value = 1

Table S2506. Gene #314: 'C9ORF69 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
C9ORF69 MUTATED	1	1	2
C9ORF69 WILD-TYPE	30	34	22

'C9ORF69 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.255 (Fisher's exact test), Q value = 1

Table S2507. Gene #314: 'C9ORF69 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
C9ORF69 MUTATED	2	0	2
C9ORF69 WILD-TYPE	38	25	17

'C9ORF69 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0639 (Fisher's exact test), Q value = 1

Table S2508. Gene #314: 'C9ORF69 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
C9ORF69 MUTATED	1	1	2
C9ORF69 WILD-TYPE	0	30	50

'C9ORF69 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.323 (Fisher's exact test), Q value = 1

Table S2509. Gene #314: 'C9ORF69 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
C9ORF69 MUTATED	1	2	1	0
C9ORF69 WILD-TYPE	30	18	10	22

'C9ORF69 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.829 (Fisher's exact test), Q value = 1

Table S2510. Gene #314: 'C9ORF69 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
C9ORF69 MUTATED	2	0	2
C9ORF69 WILD-TYPE	35	16	29

'C9ORF69 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.45 (Fisher's exact test), Q value = 1

Table S2511. Gene #314: 'C9ORF69 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
C9ORF69 MUTATED	1	2	1
C9ORF69 WILD-TYPE	37	18	25

'C9ORF69 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.682 (Fisher's exact test), Q value = 1

Table S2512. Gene #314: 'C9ORF69 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
C9ORF69 MUTATED	2	0	2
C9ORF69 WILD-TYPE	25	19	36

'KIAA0430 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.636 (Fisher's exact test), Q value = 1

Table S2513. Gene #315: 'KIAA0430 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
KIAA0430 MUTATED	3	3	2
KIAA0430 WILD-TYPE	21	42	19

'KIAA0430 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.656 (Fisher's exact test), Q value = 1

Table S2514. Gene #315: 'KIAA0430 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
KIAA0430 MUTATED	3	2	3
KIAA0430 WILD-TYPE	28	33	21

'KIAA0430 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.121 (Fisher's exact test), Q value = 1

Table S2515. Gene #315: 'KIAA0430 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
KIAA0430 MUTATED	6	0	2
KIAA0430 WILD-TYPE	34	25	17

'KIAA0430 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.11 (Fisher's exact test), Q value = 1

Table S2516. Gene #315: 'KIAA0430 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
KIAA0430 MUTATED	1	2	5
KIAA0430 WILD-TYPE	0	29	47

'KIAA0430 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.95 (Fisher's exact test), Q value = 1

Table S2517. Gene #315: 'KIAA0430 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
KIAA0430 MUTATED	4	1	1	2
KIAA0430 WILD-TYPE	27	19	10	20

'KIAA0430 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.705 (Fisher's exact test), Q value = 1

Table S2518. Gene #315: 'KIAA0430 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
KIAA0430 MUTATED	4	2	2
KIAA0430 WILD-TYPE	33	14	29

'KIAA0430 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2519. Gene #315: 'KIAA0430 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
KIAA0430 MUTATED	4	2	2
KIAA0430 WILD-TYPE	34	18	24

'KIAA0430 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.5 (Fisher's exact test), Q value = 1

Table S2520. Gene #315: 'KIAA0430 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
KIAA0430 MUTATED	1	2	5
KIAA0430 WILD-TYPE	26	17	33

'MED12 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0506 (Fisher's exact test), Q value = 1

Table S2521. Gene #316: 'MED12 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
MED12 MUTATED	0	6	0
MED12 WILD-TYPE	24	39	21

'MED12 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0552 (Fisher's exact test), Q value = 1

Table S2522. Gene #316: 'MED12 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
MED12 MUTATED	0	5	1
MED12 WILD-TYPE	31	30	23

'MED12 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.651 (Fisher's exact test), Q value = 1

Table S2523. Gene #316: 'MED12 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
MED12 MUTATED	2	2	2
MED12 WILD-TYPE	38	23	17

'MED12 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00625 (Fisher's exact test), Q value = 1

Table S2524. Gene #316: 'MED12 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
MED12 MUTATED	1	4	1
MED12 WILD-TYPE	0	27	51

Figure S194. Get High-res Image Gene #316: 'MED12 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'MED12 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0269 (Fisher's exact test), Q value = 1

Table S2525. Gene #316: 'MED12 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
MED12 MUTATED	0	4	1	1
MED12 WILD-TYPE	31	16	10	21

Figure S195. Get High-res Image Gene #316: 'MED12 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

'MED12 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.235 (Fisher's exact test), Q value = 1

Table S2526. Gene #316: 'MED12 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
MED12 MUTATED	1	1	4
MED12 WILD-TYPE	36	15	27

'MED12 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.865 (Fisher's exact test), Q value = 1

Table S2527. Gene #316: 'MED12 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
MED12 MUTATED	2	2	2
MED12 WILD-TYPE	36	18	24

'MED12 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.191 (Fisher's exact test), Q value = 1

Table S2528. Gene #316: 'MED12 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
MED12 MUTATED	4	1	1
MED12 WILD-TYPE	23	18	37

'WIPF2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.671 (Fisher's exact test), Q value = 1

Table S2529. Gene #317: 'WIPF2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
WIPF2 MUTATED	0	3	1
WIPF2 WILD-TYPE	24	42	20

'WIPF2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.243 (Fisher's exact test), Q value = 1

Table S2530. Gene #317: 'WIPF2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
WIPF2 MUTATED	0	3	1
WIPF2 WILD-TYPE	31	32	23

'WIPF2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.559 (Fisher's exact test), Q value = 1

Table S2531. Gene #317: 'WIPF2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
WIPF2 MUTATED	1	2	1
WIPF2 WILD-TYPE	39	23	18

'WIPF2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00233 (Fisher's exact test), Q value = 1

Table S2532. Gene #317: 'WIPF2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
WIPF2 MUTATED	1	3	0
WIPF2 WILD-TYPE	0	28	52

Figure S196. Get High-res Image Gene #317: 'WIPF2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'WIPF2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0655 (Fisher's exact test), Q value = 1

Table S2533. Gene #317: 'WIPF2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
WIPF2 MUTATED	0	3	0	1
WIPF2 WILD-TYPE	31	17	11	21

'WIPF2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.137 (Fisher's exact test), Q value = 1

Table S2534. Gene #317: 'WIPF2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
WIPF2 MUTATED	0	1	3
WIPF2 WILD-TYPE	37	15	28

'WIPF2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0256 (Fisher's exact test), Q value = 1

Table S2535. Gene #317: 'WIPF2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
WIPF2 MUTATED	0	3	1
WIPF2 WILD-TYPE	38	17	25

Figure S197. Get High-res Image Gene #317: 'WIPF2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

'WIPF2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0726 (Fisher's exact test), Q value = 1

Table S2536. Gene #317: 'WIPF2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
WIPF2 MUTATED	3	1	0
WIPF2 WILD-TYPE	24	18	38

'IKZF5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.201 (Fisher's exact test), Q value = 1

Table S2537. Gene #318: 'IKZF5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
IKZF5 MUTATED	0	1	2
IKZF5 WILD-TYPE	24	44	19

'IKZF5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2538. Gene #318: 'IKZF5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
IKZF5 MUTATED	1	1	1
IKZF5 WILD-TYPE	30	34	23

'IKZF5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2539. Gene #318: 'IKZF5 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
IKZF5 MUTATED	2	1	0
IKZF5 WILD-TYPE	38	24	19

'IKZF5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S2540. Gene #318: 'IKZF5 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
IKZF5 MUTATED	0	1	2
IKZF5 WILD-TYPE	1	30	50

'IKZF5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2541. Gene #318: 'IKZF5 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
IKZF5 MUTATED	1	1	0	1
IKZF5 WILD-TYPE	30	19	11	21

'IKZF5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S2542. Gene #318: 'IKZF5 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
IKZF5 MUTATED	2	0	1
IKZF5 WILD-TYPE	35	16	30

'IKZF5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.601 (Fisher's exact test), Q value = 1

Table S2543. Gene #318: 'IKZF5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
IKZF5 MUTATED	2	1	0
IKZF5 WILD-TYPE	36	19	26

'IKZF5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.795 (Fisher's exact test), Q value = 1

Table S2544. Gene #318: 'IKZF5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
IKZF5 MUTATED	1	0	2
IKZF5 WILD-TYPE	26	19	36

'ACIN1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.671 (Fisher's exact test), Q value = 1

Table S2545. Gene #319: 'ACIN1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
ACIN1 MUTATED	0	3	1
ACIN1 WILD-TYPE	24	42	20

'ACIN1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.369 (Fisher's exact test), Q value = 1

Table S2546. Gene #319: 'ACIN1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
ACIN1 MUTATED	0	2	2
ACIN1 WILD-TYPE	31	33	22

'ACIN1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.68 (Fisher's exact test), Q value = 1

Table S2547. Gene #319: 'ACIN1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
ACIN1 MUTATED	2	2	0
ACIN1 WILD-TYPE	38	23	19

'ACIN1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0263 (Fisher's exact test), Q value = 1

Table S2548. Gene #319: 'ACIN1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
ACIN1 MUTATED	1	2	1
ACIN1 WILD-TYPE	0	29	51

Figure S198. Get High-res Image Gene #319: 'ACIN1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'ACIN1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0655 (Fisher's exact test), Q value = 1

Table S2549. Gene #319: 'ACIN1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
ACIN1 MUTATED	0	3	0	1
ACIN1 WILD-TYPE	31	17	11	21

'ACIN1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.401 (Fisher's exact test), Q value = 1

Table S2550. Gene #319: 'ACIN1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
ACIN1 MUTATED	1	0	3
ACIN1 WILD-TYPE	36	16	28

'ACIN1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.45 (Fisher's exact test), Q value = 1

Table S2551. Gene #319: 'ACIN1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
ACIN1 MUTATED	1	2	1
ACIN1 WILD-TYPE	37	18	25

'ACIN1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.2 (Fisher's exact test), Q value = 1

Table S2552. Gene #319: 'ACIN1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
ACIN1 MUTATED	3	0	1
ACIN1 WILD-TYPE	24	19	37

'LRCH1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.592 (Fisher's exact test), Q value = 1

Table S2553. Gene #320: 'LRCH1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
LRCH1 MUTATED	1	6	2
LRCH1 WILD-TYPE	23	39	19

'LRCH1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.743 (Fisher's exact test), Q value = 1

Table S2554. Gene #320: 'LRCH1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
LRCH1 MUTATED	2	4	3
LRCH1 WILD-TYPE	29	31	21

'LRCH1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0081 (Fisher's exact test), Q value = 1

Table S2555. Gene #320: 'LRCH1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
LRCH1 MUTATED	2	1	6
LRCH1 WILD-TYPE	38	24	13

Figure S199. Get High-res Image Gene #320: 'LRCH1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

'LRCH1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0359 (Fisher's exact test), Q value = 1

Table S2556. Gene #320: 'LRCH1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
LRCH1 MUTATED	1	5	3
LRCH1 WILD-TYPE	0	26	49

Figure S200. Get High-res Image Gene #320: 'LRCH1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'LRCH1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.124 (Fisher's exact test), Q value = 1

Table S2557. Gene #320: 'LRCH1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
LRCH1 MUTATED	1	2	3	3
LRCH1 WILD-TYPE	30	18	8	19

'LRCH1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.148 (Fisher's exact test), Q value = 1

Table S2558. Gene #320: 'LRCH1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
LRCH1 MUTATED	3	4	2
LRCH1 WILD-TYPE	34	12	29

'LRCH1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0286 (Fisher's exact test), Q value = 1

Table S2559. Gene #320: 'LRCH1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
LRCH1 MUTATED	1	2	6
LRCH1 WILD-TYPE	37	18	20

Figure S201. Get High-res Image Gene #320: 'LRCH1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

'LRCH1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.285 (Fisher's exact test), Q value = 1

Table S2560. Gene #320: 'LRCH1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
LRCH1 MUTATED	2	4	3
LRCH1 WILD-TYPE	25	15	35

'CNGB1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.12 (Fisher's exact test), Q value = 1

Table S2561. Gene #321: 'CNGB1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
CNGB1 MUTATED	4	3	0
CNGB1 WILD-TYPE	20	42	21

'CNGB1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.323 (Fisher's exact test), Q value = 1

Table S2562. Gene #321: 'CNGB1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
CNGB1 MUTATED	4	1	2
CNGB1 WILD-TYPE	27	34	22

'CNGB1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.455 (Fisher's exact test), Q value = 1

Table S2563. Gene #321: 'CNGB1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
CNGB1 MUTATED	3	1	3
CNGB1 WILD-TYPE	37	24	16

'CNGB1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0924 (Fisher's exact test), Q value = 1

Table S2564. Gene #321: 'CNGB1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
CNGB1 MUTATED	1	2	4
CNGB1 WILD-TYPE	0	29	48

'CNGB1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2565. Gene #321: 'CNGB1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
CNGB1 MUTATED	3	1	1	2
CNGB1 WILD-TYPE	28	19	10	20

'CNGB1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.768 (Fisher's exact test), Q value = 1

Table S2566. Gene #321: 'CNGB1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
CNGB1 MUTATED	3	2	2
CNGB1 WILD-TYPE	34	14	29

'CNGB1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.779 (Fisher's exact test), Q value = 1

Table S2567. Gene #321: 'CNGB1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
CNGB1 MUTATED	3	1	3
CNGB1 WILD-TYPE	35	19	23

'CNGB1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.598 (Fisher's exact test), Q value = 1

Table S2568. Gene #321: 'CNGB1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
CNGB1 MUTATED	1	2	4
CNGB1 WILD-TYPE	26	17	34

'ATP4A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.242 (Fisher's exact test), Q value = 1

Table S2569. Gene #322: 'ATP4A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
ATP4A MUTATED	5	4	1
ATP4A WILD-TYPE	19	41	20

'ATP4A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.837 (Fisher's exact test), Q value = 1

Table S2570. Gene #322: 'ATP4A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
ATP4A MUTATED	4	3	3
ATP4A WILD-TYPE	27	32	21

'ATP4A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.62 (Fisher's exact test), Q value = 1

Table S2571. Gene #322: 'ATP4A MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
ATP4A MUTATED	6	3	1
ATP4A WILD-TYPE	34	22	18

'ATP4A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.15 (Fisher's exact test), Q value = 1

Table S2572. Gene #322: 'ATP4A MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
ATP4A MUTATED	1	3	6
ATP4A WILD-TYPE	0	28	46

'ATP4A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.444 (Fisher's exact test), Q value = 1

Table S2573. Gene #322: 'ATP4A MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
ATP4A MUTATED	4	4	0	2
ATP4A WILD-TYPE	27	16	11	20

'ATP4A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.825 (Fisher's exact test), Q value = 1

Table S2574. Gene #322: 'ATP4A MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
ATP4A MUTATED	5	1	4
ATP4A WILD-TYPE	32	15	27

'ATP4A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.755 (Fisher's exact test), Q value = 1

Table S2575. Gene #322: 'ATP4A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
ATP4A MUTATED	5	3	2
ATP4A WILD-TYPE	33	17	24

'ATP4A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.691 (Fisher's exact test), Q value = 1

Table S2576. Gene #322: 'ATP4A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
ATP4A MUTATED	4	1	5
ATP4A WILD-TYPE	23	18	33

'HSD17B7 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2577. Gene #323: 'HSD17B7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
HSD17B7 MUTATED	1	3	1
HSD17B7 WILD-TYPE	23	42	20

'HSD17B7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.304 (Fisher's exact test), Q value = 1

Table S2578. Gene #323: 'HSD17B7 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
HSD17B7 MUTATED	1	1	3
HSD17B7 WILD-TYPE	30	34	21

'HSD17B7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.5 (Fisher's exact test), Q value = 1

Table S2579. Gene #323: 'HSD17B7 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
HSD17B7 MUTATED	4	1	0
HSD17B7 WILD-TYPE	36	24	19

'HSD17B7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.202 (Fisher's exact test), Q value = 1

Table S2580. Gene #323: 'HSD17B7 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
HSD17B7 MUTATED	0	0	5
HSD17B7 WILD-TYPE	1	31	47

'HSD17B7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.516 (Fisher's exact test), Q value = 1

Table S2581. Gene #323: 'HSD17B7 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
HSD17B7 MUTATED	3	0	0	2
HSD17B7 WILD-TYPE	28	20	11	20

'HSD17B7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.715 (Fisher's exact test), Q value = 1

Table S2582. Gene #323: 'HSD17B7 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
HSD17B7 MUTATED	3	0	2
HSD17B7 WILD-TYPE	34	16	29

'HSD17B7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.852 (Fisher's exact test), Q value = 1

Table S2583. Gene #323: 'HSD17B7 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
HSD17B7 MUTATED	3	1	1
HSD17B7 WILD-TYPE	35	19	25

'HSD17B7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.848 (Fisher's exact test), Q value = 1

Table S2584. Gene #323: 'HSD17B7 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
HSD17B7 MUTATED	1	1	3
HSD17B7 WILD-TYPE	26	18	35

'EGR2 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2585. Gene #324: 'EGR2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
EGR2 MUTATED	1	2	0
EGR2 WILD-TYPE	23	43	21

'EGR2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.778 (Fisher's exact test), Q value = 1

Table S2586. Gene #324: 'EGR2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
EGR2 MUTATED	1	2	0
EGR2 WILD-TYPE	30	33	24

'EGR2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.139 (Fisher's exact test), Q value = 1

Table S2587. Gene #324: 'EGR2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
EGR2 MUTATED	0	2	1
EGR2 WILD-TYPE	40	23	18

'EGR2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0829 (Fisher's exact test), Q value = 1

Table S2588. Gene #324: 'EGR2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
EGR2 MUTATED	0	3	0
EGR2 WILD-TYPE	1	28	52

'EGR2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0939 (Fisher's exact test), Q value = 1

Table S2589. Gene #324: 'EGR2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
EGR2 MUTATED	0	2	1	0
EGR2 WILD-TYPE	31	18	10	22

'EGR2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.139 (Fisher's exact test), Q value = 1

Table S2590. Gene #324: 'EGR2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
EGR2 MUTATED	0	0	3
EGR2 WILD-TYPE	37	16	28

'EGR2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.159 (Fisher's exact test), Q value = 1

Table S2591. Gene #324: 'EGR2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
EGR2 MUTATED	0	1	2
EGR2 WILD-TYPE	38	19	24

'EGR2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0409 (Fisher's exact test), Q value = 1

Table S2592. Gene #324: 'EGR2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
EGR2 MUTATED	3	0	0
EGR2 WILD-TYPE	24	19	38

Figure S202. Get High-res Image Gene #324: 'EGR2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

'INTS7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.659 (Fisher's exact test), Q value = 1

Table S2593. Gene #325: 'INTS7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
INTS7 MUTATED	2	6	1
INTS7 WILD-TYPE	22	39	20

'INTS7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.292 (Fisher's exact test), Q value = 1

Table S2594. Gene #325: 'INTS7 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
INTS7 MUTATED	1	5	3
INTS7 WILD-TYPE	30	30	21

'INTS7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.137 (Fisher's exact test), Q value = 1

Table S2595. Gene #325: 'INTS7 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
INTS7 MUTATED	2	3	4
INTS7 WILD-TYPE	38	22	15

'INTS7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0359 (Fisher's exact test), Q value = 1

Table S2596. Gene #325: 'INTS7 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
INTS7 MUTATED	1	5	3
INTS7 WILD-TYPE	0	26	49

Figure S203. Get High-res Image Gene #325: 'INTS7 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'INTS7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0452 (Fisher's exact test), Q value = 1

Table S2597. Gene #325: 'INTS7 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
INTS7 MUTATED	1	5	2	1
INTS7 WILD-TYPE	30	15	9	21

Figure S204. Get High-res Image Gene #325: 'INTS7 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

'INTS7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.582 (Fisher's exact test), Q value = 1

Table S2598. Gene #325: 'INTS7 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
INTS7 MUTATED	3	1	5
INTS7 WILD-TYPE	34	15	26

'INTS7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0241 (Fisher's exact test), Q value = 1

Table S2599. Gene #325: 'INTS7 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
INTS7 MUTATED	1	5	3
INTS7 WILD-TYPE	37	15	23

Figure S205. Get High-res Image Gene #325: 'INTS7 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

'INTS7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.388 (Fisher's exact test), Q value = 1

Table S2600. Gene #325: 'INTS7 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
INTS7 MUTATED	5	1	3
INTS7 WILD-TYPE	22	18	35

'RPL10 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.428 (Fisher's exact test), Q value = 1

Table S2601. Gene #326: 'RPL10 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
RPL10 MUTATED	0	3	0
RPL10 WILD-TYPE	24	42	21

'RPL10 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.111 (Fisher's exact test), Q value = 1

Table S2602. Gene #326: 'RPL10 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
RPL10 MUTATED	0	3	0
RPL10 WILD-TYPE	31	32	24

'RPL10 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.139 (Fisher's exact test), Q value = 1

Table S2603. Gene #326: 'RPL10 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
RPL10 MUTATED	0	2	1
RPL10 WILD-TYPE	40	23	18

'RPL10 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.569 (Fisher's exact test), Q value = 1

Table S2604. Gene #326: 'RPL10 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
RPL10 MUTATED	0	2	1
RPL10 WILD-TYPE	1	29	51

'RPL10 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0252 (Fisher's exact test), Q value = 1

Table S2605. Gene #326: 'RPL10 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
RPL10 MUTATED	0	3	0	0
RPL10 WILD-TYPE	31	17	11	22

Figure S206. Get High-res Image Gene #326: 'RPL10 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

'RPL10 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.139 (Fisher's exact test), Q value = 1

Table S2606. Gene #326: 'RPL10 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
RPL10 MUTATED	0	0	3
RPL10 WILD-TYPE	37	16	28

'RPL10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.012 (Fisher's exact test), Q value = 1

Table S2607. Gene #326: 'RPL10 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
RPL10 MUTATED	0	3	0
RPL10 WILD-TYPE	38	17	26

Figure S207. Get High-res Image Gene #326: 'RPL10 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

'RPL10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0409 (Fisher's exact test), Q value = 1

Table S2608. Gene #326: 'RPL10 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
RPL10 MUTATED	3	0	0
RPL10 WILD-TYPE	24	19	38

Figure S208. Get High-res Image Gene #326: 'RPL10 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

'SCRIB MUTATION STATUS' versus 'CN_CNMF'

P value = 0.884 (Fisher's exact test), Q value = 1

Table S2609. Gene #327: 'SCRIB MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
SCRIB MUTATED	2	3	2
SCRIB WILD-TYPE	22	42	19

'SCRIB MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.191 (Fisher's exact test), Q value = 1

Table S2610. Gene #327: 'SCRIB MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
SCRIB MUTATED	1	2	4
SCRIB WILD-TYPE	30	33	20

'SCRIB MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.455 (Fisher's exact test), Q value = 1

Table S2611. Gene #327: 'SCRIB MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
SCRIB MUTATED	3	1	3
SCRIB WILD-TYPE	37	24	16

'SCRIB MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0924 (Fisher's exact test), Q value = 1

Table S2612. Gene #327: 'SCRIB MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
SCRIB MUTATED	1	2	4
SCRIB WILD-TYPE	0	29	48

'SCRIB MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0908 (Fisher's exact test), Q value = 1

Table S2613. Gene #327: 'SCRIB MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
SCRIB MUTATED	1	2	3	1
SCRIB WILD-TYPE	30	18	8	21

'SCRIB MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.768 (Fisher's exact test), Q value = 1

Table S2614. Gene #327: 'SCRIB MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
SCRIB MUTATED	3	2	2
SCRIB WILD-TYPE	34	14	29

'SCRIB MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.602 (Fisher's exact test), Q value = 1

Table S2615. Gene #327: 'SCRIB MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
SCRIB MUTATED	2	2	3
SCRIB WILD-TYPE	36	18	23

'SCRIB MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S2616. Gene #327: 'SCRIB MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
SCRIB MUTATED	2	2	3
SCRIB WILD-TYPE	25	17	35

'CYP11B2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.257 (Fisher's exact test), Q value = 1

Table S2617. Gene #328: 'CYP11B2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
CYP11B2 MUTATED	0	2	2
CYP11B2 WILD-TYPE	24	43	19

'CYP11B2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2618. Gene #328: 'CYP11B2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
CYP11B2 MUTATED	1	2	1
CYP11B2 WILD-TYPE	30	33	23

'CYP11B2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.255 (Fisher's exact test), Q value = 1

Table S2619. Gene #328: 'CYP11B2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
CYP11B2 MUTATED	2	0	2
CYP11B2 WILD-TYPE	38	25	17

'CYP11B2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.645 (Fisher's exact test), Q value = 1

Table S2620. Gene #328: 'CYP11B2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
CYP11B2 MUTATED	0	2	2
CYP11B2 WILD-TYPE	1	29	50

'CYP11B2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0948 (Fisher's exact test), Q value = 1

Table S2621. Gene #328: 'CYP11B2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
CYP11B2 MUTATED	0	1	0	3
CYP11B2 WILD-TYPE	31	19	11	19

'CYP11B2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.315 (Fisher's exact test), Q value = 1

Table S2622. Gene #328: 'CYP11B2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
CYP11B2 MUTATED	1	2	1
CYP11B2 WILD-TYPE	36	14	30

'CYP11B2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.811 (Fisher's exact test), Q value = 1

Table S2623. Gene #328: 'CYP11B2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
CYP11B2 MUTATED	1	1	2
CYP11B2 WILD-TYPE	37	19	24

'CYP11B2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.436 (Fisher's exact test), Q value = 1

Table S2624. Gene #328: 'CYP11B2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
CYP11B2 MUTATED	1	2	1
CYP11B2 WILD-TYPE	26	17	37

'BCL3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.307 (Fisher's exact test), Q value = 1

Table S2625. Gene #329: 'BCL3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
BCL3 MUTATED	2	1	0
BCL3 WILD-TYPE	22	44	21

'BCL3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.361 (Fisher's exact test), Q value = 1

Table S2626. Gene #329: 'BCL3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
BCL3 MUTATED	2	0	1
BCL3 WILD-TYPE	29	35	23

'BCL3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.314 (Fisher's exact test), Q value = 1

Table S2627. Gene #329: 'BCL3 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
BCL3 MUTATED	3	0	0
BCL3 WILD-TYPE	37	25	19

'BCL3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0188 (Fisher's exact test), Q value = 1

Table S2628. Gene #329: 'BCL3 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
BCL3 MUTATED	1	0	2
BCL3 WILD-TYPE	0	31	50

Figure S209. Get High-res Image Gene #329: 'BCL3 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'BCL3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.749 (Fisher's exact test), Q value = 1

Table S2629. Gene #329: 'BCL3 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
BCL3 MUTATED	2	1	0	0
BCL3 WILD-TYPE	29	19	11	22

'BCL3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S2630. Gene #329: 'BCL3 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
BCL3 MUTATED	2	0	1
BCL3 WILD-TYPE	35	16	30

'BCL3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.601 (Fisher's exact test), Q value = 1

Table S2631. Gene #329: 'BCL3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
BCL3 MUTATED	2	1	0
BCL3 WILD-TYPE	36	19	26

'BCL3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.795 (Fisher's exact test), Q value = 1

Table S2632. Gene #329: 'BCL3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
BCL3 MUTATED	1	0	2
BCL3 WILD-TYPE	26	19	36

'PHACTR2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.306 (Fisher's exact test), Q value = 1

Table S2633. Gene #330: 'PHACTR2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
PHACTR2 MUTATED	1	5	0
PHACTR2 WILD-TYPE	23	40	21

'PHACTR2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.497 (Fisher's exact test), Q value = 1

Table S2634. Gene #330: 'PHACTR2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
PHACTR2 MUTATED	1	4	1
PHACTR2 WILD-TYPE	30	31	23

'PHACTR2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.651 (Fisher's exact test), Q value = 1

Table S2635. Gene #330: 'PHACTR2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
PHACTR2 MUTATED	2	2	2
PHACTR2 WILD-TYPE	38	23	17

'PHACTR2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0273 (Fisher's exact test), Q value = 1

Table S2636. Gene #330: 'PHACTR2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
PHACTR2 MUTATED	1	3	2
PHACTR2 WILD-TYPE	0	28	50

Figure S210. Get High-res Image Gene #330: 'PHACTR2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'PHACTR2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.688 (Fisher's exact test), Q value = 1

Table S2637. Gene #330: 'PHACTR2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
PHACTR2 MUTATED	1	2	1	2
PHACTR2 WILD-TYPE	30	18	10	20

'PHACTR2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.284 (Fisher's exact test), Q value = 1

Table S2638. Gene #330: 'PHACTR2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
PHACTR2 MUTATED	1	2	3
PHACTR2 WILD-TYPE	36	14	28

'PHACTR2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.561 (Fisher's exact test), Q value = 1

Table S2639. Gene #330: 'PHACTR2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
PHACTR2 MUTATED	2	1	3
PHACTR2 WILD-TYPE	36	19	23

'PHACTR2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.862 (Fisher's exact test), Q value = 1

Table S2640. Gene #330: 'PHACTR2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
PHACTR2 MUTATED	2	2	2
PHACTR2 WILD-TYPE	25	17	36

'AFF4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.448 (Fisher's exact test), Q value = 1

Table S2641. Gene #331: 'AFF4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
AFF4 MUTATED	2	1	1
AFF4 WILD-TYPE	22	44	20

'AFF4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.827 (Fisher's exact test), Q value = 1

Table S2642. Gene #331: 'AFF4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
AFF4 MUTATED	2	1	1
AFF4 WILD-TYPE	29	34	23

'AFF4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.343 (Fisher's exact test), Q value = 1

Table S2643. Gene #331: 'AFF4 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
AFF4 MUTATED	1	1	2
AFF4 WILD-TYPE	39	24	17

'AFF4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.645 (Fisher's exact test), Q value = 1

Table S2644. Gene #331: 'AFF4 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
AFF4 MUTATED	0	2	2
AFF4 WILD-TYPE	1	29	50

'AFF4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.29 (Fisher's exact test), Q value = 1

Table S2645. Gene #331: 'AFF4 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
AFF4 MUTATED	0	1	1	2
AFF4 WILD-TYPE	31	19	10	20

'AFF4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S2646. Gene #331: 'AFF4 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
AFF4 MUTATED	2	1	1
AFF4 WILD-TYPE	35	15	30

'AFF4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.075 (Fisher's exact test), Q value = 1

Table S2647. Gene #331: 'AFF4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
AFF4 MUTATED	0	1	3
AFF4 WILD-TYPE	38	19	23

'AFF4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S2648. Gene #331: 'AFF4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
AFF4 MUTATED	1	1	2
AFF4 WILD-TYPE	26	18	36

'UNC5A MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2649. Gene #332: 'UNC5A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
UNC5A MUTATED	2	3	1
UNC5A WILD-TYPE	22	42	20

'UNC5A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2650. Gene #332: 'UNC5A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
UNC5A MUTATED	2	2	2
UNC5A WILD-TYPE	29	33	22

'UNC5A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.704 (Fisher's exact test), Q value = 1

Table S2651. Gene #332: 'UNC5A MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
UNC5A MUTATED	2	1	2
UNC5A WILD-TYPE	38	24	17

'UNC5A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0428 (Fisher's exact test), Q value = 1

Table S2652. Gene #332: 'UNC5A MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
UNC5A MUTATED	1	2	2
UNC5A WILD-TYPE	0	29	50

Figure S211. Get High-res Image Gene #332: 'UNC5A MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'UNC5A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.633 (Fisher's exact test), Q value = 1

Table S2653. Gene #332: 'UNC5A MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
UNC5A MUTATED	1	2	0	2
UNC5A WILD-TYPE	30	18	11	20

'UNC5A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S2654. Gene #332: 'UNC5A MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
UNC5A MUTATED	2	1	2
UNC5A WILD-TYPE	35	15	29

'UNC5A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.509 (Fisher's exact test), Q value = 1

Table S2655. Gene #332: 'UNC5A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
UNC5A MUTATED	1	2	2
UNC5A WILD-TYPE	37	18	24

'UNC5A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S2656. Gene #332: 'UNC5A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
UNC5A MUTATED	2	1	2
UNC5A WILD-TYPE	25	18	36

'TRPM8 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.346 (Fisher's exact test), Q value = 1

Table S2657. Gene #333: 'TRPM8 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
TRPM8 MUTATED	1	1	2
TRPM8 WILD-TYPE	23	44	19

'TRPM8 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.305 (Fisher's exact test), Q value = 1

Table S2658. Gene #333: 'TRPM8 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
TRPM8 MUTATED	3	1	0
TRPM8 WILD-TYPE	28	34	24

'TRPM8 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2659. Gene #333: 'TRPM8 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
TRPM8 MUTATED	2	1	1
TRPM8 WILD-TYPE	38	24	18

'TRPM8 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S2660. Gene #333: 'TRPM8 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
TRPM8 MUTATED	0	1	3
TRPM8 WILD-TYPE	1	30	49

'TRPM8 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.561 (Fisher's exact test), Q value = 1

Table S2661. Gene #333: 'TRPM8 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
TRPM8 MUTATED	2	1	1	0
TRPM8 WILD-TYPE	29	19	10	22

'TRPM8 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S2662. Gene #333: 'TRPM8 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
TRPM8 MUTATED	2	1	1
TRPM8 WILD-TYPE	35	15	30

'TRPM8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.564 (Fisher's exact test), Q value = 1

Table S2663. Gene #333: 'TRPM8 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
TRPM8 MUTATED	3	0	1
TRPM8 WILD-TYPE	35	20	25

'TRPM8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S2664. Gene #333: 'TRPM8 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
TRPM8 MUTATED	1	1	2
TRPM8 WILD-TYPE	26	18	36

'U2AF1 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2665. Gene #334: 'U2AF1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
U2AF1 MUTATED	1	2	0
U2AF1 WILD-TYPE	23	43	21

'U2AF1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2666. Gene #334: 'U2AF1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
U2AF1 MUTATED	1	1	1
U2AF1 WILD-TYPE	30	34	23

'U2AF1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.795 (Fisher's exact test), Q value = 1

Table S2667. Gene #334: 'U2AF1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
U2AF1 MUTATED	1	1	1
U2AF1 WILD-TYPE	39	24	18

'U2AF1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.569 (Fisher's exact test), Q value = 1

Table S2668. Gene #334: 'U2AF1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
U2AF1 MUTATED	0	2	1
U2AF1 WILD-TYPE	1	29	51

'U2AF1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.498 (Fisher's exact test), Q value = 1

Table S2669. Gene #334: 'U2AF1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
U2AF1 MUTATED	1	1	1	0
U2AF1 WILD-TYPE	30	19	10	22

'U2AF1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.783 (Fisher's exact test), Q value = 1

Table S2670. Gene #334: 'U2AF1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
U2AF1 MUTATED	1	1	1
U2AF1 WILD-TYPE	36	15	30

'U2AF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2671. Gene #334: 'U2AF1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
U2AF1 MUTATED	1	1	1
U2AF1 WILD-TYPE	37	19	25

'U2AF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S2672. Gene #334: 'U2AF1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
U2AF1 MUTATED	1	1	1
U2AF1 WILD-TYPE	26	18	37

'CCDC88A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.671 (Fisher's exact test), Q value = 1

Table S2673. Gene #335: 'CCDC88A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
CCDC88A MUTATED	0	3	1
CCDC88A WILD-TYPE	24	42	20

'CCDC88A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2674. Gene #335: 'CCDC88A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
CCDC88A MUTATED	1	2	1
CCDC88A WILD-TYPE	30	33	23

'CCDC88A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2675. Gene #335: 'CCDC88A MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
CCDC88A MUTATED	2	1	1
CCDC88A WILD-TYPE	38	24	18

'CCDC88A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.645 (Fisher's exact test), Q value = 1

Table S2676. Gene #335: 'CCDC88A MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
CCDC88A MUTATED	0	2	2
CCDC88A WILD-TYPE	1	29	50

'CCDC88A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.894 (Fisher's exact test), Q value = 1

Table S2677. Gene #335: 'CCDC88A MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
CCDC88A MUTATED	1	1	1	1
CCDC88A WILD-TYPE	30	19	10	21

'CCDC88A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.668 (Fisher's exact test), Q value = 1

Table S2678. Gene #335: 'CCDC88A MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
CCDC88A MUTATED	1	1	2
CCDC88A WILD-TYPE	36	15	29

'CCDC88A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.683 (Fisher's exact test), Q value = 1

Table S2679. Gene #335: 'CCDC88A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
CCDC88A MUTATED	2	0	2
CCDC88A WILD-TYPE	36	20	24

'CCDC88A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.436 (Fisher's exact test), Q value = 1

Table S2680. Gene #335: 'CCDC88A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
CCDC88A MUTATED	1	2	1
CCDC88A WILD-TYPE	26	17	37

'NKAP MUTATION STATUS' versus 'CN_CNMF'

P value = 0.593 (Fisher's exact test), Q value = 1

Table S2681. Gene #336: 'NKAP MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
NKAP MUTATED	2	3	0
NKAP WILD-TYPE	22	42	21

'NKAP MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0668 (Fisher's exact test), Q value = 1

Table S2682. Gene #336: 'NKAP MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
NKAP MUTATED	2	0	3
NKAP WILD-TYPE	29	35	21

'NKAP MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.245 (Fisher's exact test), Q value = 1

Table S2683. Gene #336: 'NKAP MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
NKAP MUTATED	4	0	1
NKAP WILD-TYPE	36	25	18

'NKAP MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.065 (Fisher's exact test), Q value = 1

Table S2684. Gene #336: 'NKAP MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
NKAP MUTATED	1	1	3
NKAP WILD-TYPE	0	30	49

'NKAP MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.858 (Fisher's exact test), Q value = 1

Table S2685. Gene #336: 'NKAP MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
NKAP MUTATED	3	1	0	1
NKAP WILD-TYPE	28	19	11	21

'NKAP MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S2686. Gene #336: 'NKAP MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
NKAP MUTATED	2	1	2
NKAP WILD-TYPE	35	15	29

'NKAP MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.852 (Fisher's exact test), Q value = 1

Table S2687. Gene #336: 'NKAP MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
NKAP MUTATED	3	1	1
NKAP WILD-TYPE	35	19	25

'NKAP MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.848 (Fisher's exact test), Q value = 1

Table S2688. Gene #336: 'NKAP MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
NKAP MUTATED	1	1	3
NKAP WILD-TYPE	26	18	35

'PCOLCE2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.143 (Fisher's exact test), Q value = 1

Table S2689. Gene #337: 'PCOLCE2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
PCOLCE2 MUTATED	0	5	3
PCOLCE2 WILD-TYPE	24	40	18

'PCOLCE2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.809 (Fisher's exact test), Q value = 1

Table S2690. Gene #337: 'PCOLCE2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
PCOLCE2 MUTATED	2	3	3
PCOLCE2 WILD-TYPE	29	32	21

'PCOLCE2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.56 (Fisher's exact test), Q value = 1

Table S2691. Gene #337: 'PCOLCE2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
PCOLCE2 MUTATED	5	1	2
PCOLCE2 WILD-TYPE	35	24	17

'PCOLCE2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.138 (Fisher's exact test), Q value = 1

Table S2692. Gene #337: 'PCOLCE2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
PCOLCE2 MUTATED	1	3	4
PCOLCE2 WILD-TYPE	0	28	48

'PCOLCE2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.611 (Fisher's exact test), Q value = 1

Table S2693. Gene #337: 'PCOLCE2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
PCOLCE2 MUTATED	3	2	2	1
PCOLCE2 WILD-TYPE	28	18	9	21

'PCOLCE2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.705 (Fisher's exact test), Q value = 1

Table S2694. Gene #337: 'PCOLCE2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
PCOLCE2 MUTATED	4	2	2
PCOLCE2 WILD-TYPE	33	14	29

'PCOLCE2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2695. Gene #337: 'PCOLCE2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
PCOLCE2 MUTATED	4	2	2
PCOLCE2 WILD-TYPE	34	18	24

'PCOLCE2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S2696. Gene #337: 'PCOLCE2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
PCOLCE2 MUTATED	2	2	4
PCOLCE2 WILD-TYPE	25	17	34

'NT5C2 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2697. Gene #338: 'NT5C2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
NT5C2 MUTATED	1	2	0
NT5C2 WILD-TYPE	23	43	21

'NT5C2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2698. Gene #338: 'NT5C2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
NT5C2 MUTATED	1	1	1
NT5C2 WILD-TYPE	30	34	23

'NT5C2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0792 (Fisher's exact test), Q value = 1

Table S2699. Gene #338: 'NT5C2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
NT5C2 MUTATED	0	1	2
NT5C2 WILD-TYPE	40	24	17

'NT5C2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S2700. Gene #338: 'NT5C2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
NT5C2 MUTATED	0	1	2
NT5C2 WILD-TYPE	1	30	50

'NT5C2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.26 (Fisher's exact test), Q value = 1

Table S2701. Gene #338: 'NT5C2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
NT5C2 MUTATED	0	1	0	2
NT5C2 WILD-TYPE	31	19	11	20

'NT5C2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.783 (Fisher's exact test), Q value = 1

Table S2702. Gene #338: 'NT5C2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
NT5C2 MUTATED	1	1	1
NT5C2 WILD-TYPE	36	15	30

'NT5C2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.159 (Fisher's exact test), Q value = 1

Table S2703. Gene #338: 'NT5C2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
NT5C2 MUTATED	0	1	2
NT5C2 WILD-TYPE	38	19	24

'NT5C2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S2704. Gene #338: 'NT5C2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
NT5C2 MUTATED	1	1	1
NT5C2 WILD-TYPE	26	18	37

'CMTM1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.428 (Fisher's exact test), Q value = 1

Table S2705. Gene #339: 'CMTM1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
CMTM1 MUTATED	0	3	0
CMTM1 WILD-TYPE	24	42	21

'CMTM1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.111 (Fisher's exact test), Q value = 1

Table S2706. Gene #339: 'CMTM1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
CMTM1 MUTATED	0	3	0
CMTM1 WILD-TYPE	31	32	24

'CMTM1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0792 (Fisher's exact test), Q value = 1

Table S2707. Gene #339: 'CMTM1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
CMTM1 MUTATED	0	1	2
CMTM1 WILD-TYPE	40	24	17

'CMTM1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0829 (Fisher's exact test), Q value = 1

Table S2708. Gene #339: 'CMTM1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
CMTM1 MUTATED	0	3	0
CMTM1 WILD-TYPE	1	28	52

'CMTM1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0939 (Fisher's exact test), Q value = 1

Table S2709. Gene #339: 'CMTM1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
CMTM1 MUTATED	0	2	1	0
CMTM1 WILD-TYPE	31	18	10	22

'CMTM1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.217 (Fisher's exact test), Q value = 1

Table S2710. Gene #339: 'CMTM1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
CMTM1 MUTATED	0	1	2
CMTM1 WILD-TYPE	37	15	29

'CMTM1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0911 (Fisher's exact test), Q value = 1

Table S2711. Gene #339: 'CMTM1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
CMTM1 MUTATED	0	2	1
CMTM1 WILD-TYPE	38	18	25

'CMTM1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.228 (Fisher's exact test), Q value = 1

Table S2712. Gene #339: 'CMTM1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
CMTM1 MUTATED	2	1	0
CMTM1 WILD-TYPE	25	18	38

'SPAG9 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.868 (Fisher's exact test), Q value = 1

Table S2713. Gene #340: 'SPAG9 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
SPAG9 MUTATED	1	4	1
SPAG9 WILD-TYPE	23	41	20

'SPAG9 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.694 (Fisher's exact test), Q value = 1

Table S2714. Gene #340: 'SPAG9 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
SPAG9 MUTATED	2	4	1
SPAG9 WILD-TYPE	29	31	23

'SPAG9 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2715. Gene #340: 'SPAG9 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
SPAG9 MUTATED	4	2	1
SPAG9 WILD-TYPE	36	23	18

'SPAG9 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0646 (Fisher's exact test), Q value = 1

Table S2716. Gene #340: 'SPAG9 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
SPAG9 MUTATED	1	3	3
SPAG9 WILD-TYPE	0	28	49

'SPAG9 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.166 (Fisher's exact test), Q value = 1

Table S2717. Gene #340: 'SPAG9 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
SPAG9 MUTATED	1	4	1	1
SPAG9 WILD-TYPE	30	16	10	21

'SPAG9 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.593 (Fisher's exact test), Q value = 1

Table S2718. Gene #340: 'SPAG9 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
SPAG9 MUTATED	2	1	4
SPAG9 WILD-TYPE	35	15	27

'SPAG9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0783 (Fisher's exact test), Q value = 1

Table S2719. Gene #340: 'SPAG9 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
SPAG9 MUTATED	1	4	2
SPAG9 WILD-TYPE	37	16	24

'SPAG9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.194 (Fisher's exact test), Q value = 1

Table S2720. Gene #340: 'SPAG9 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
SPAG9 MUTATED	4	2	1
SPAG9 WILD-TYPE	23	17	37

'PHTF2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.306 (Fisher's exact test), Q value = 1

Table S2721. Gene #341: 'PHTF2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
PHTF2 MUTATED	1	5	0
PHTF2 WILD-TYPE	23	40	21

'PHTF2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.481 (Fisher's exact test), Q value = 1

Table S2722. Gene #341: 'PHTF2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
PHTF2 MUTATED	1	4	2
PHTF2 WILD-TYPE	30	31	22

'PHTF2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.147 (Fisher's exact test), Q value = 1

Table S2723. Gene #341: 'PHTF2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
PHTF2 MUTATED	1	3	3
PHTF2 WILD-TYPE	39	22	16

'PHTF2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0249 (Fisher's exact test), Q value = 1

Table S2724. Gene #341: 'PHTF2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
PHTF2 MUTATED	1	4	2
PHTF2 WILD-TYPE	0	27	50

Figure S212. Get High-res Image Gene #341: 'PHTF2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'PHTF2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0861 (Fisher's exact test), Q value = 1

Table S2725. Gene #341: 'PHTF2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
PHTF2 MUTATED	0	3	1	3
PHTF2 WILD-TYPE	31	17	10	19

'PHTF2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.215 (Fisher's exact test), Q value = 1

Table S2726. Gene #341: 'PHTF2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
PHTF2 MUTATED	1	2	4
PHTF2 WILD-TYPE	36	14	27

'PHTF2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0127 (Fisher's exact test), Q value = 1

Table S2727. Gene #341: 'PHTF2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
PHTF2 MUTATED	0	4	3
PHTF2 WILD-TYPE	38	16	23

Figure S213. Get High-res Image Gene #341: 'PHTF2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

'PHTF2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.194 (Fisher's exact test), Q value = 1

Table S2728. Gene #341: 'PHTF2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
PHTF2 MUTATED	4	2	1
PHTF2 WILD-TYPE	23	17	37

'HIST1H1B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.671 (Fisher's exact test), Q value = 1

Table S2729. Gene #342: 'HIST1H1B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
HIST1H1B MUTATED	0	3	1
HIST1H1B WILD-TYPE	24	42	20

'HIST1H1B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0892 (Fisher's exact test), Q value = 1

Table S2730. Gene #342: 'HIST1H1B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
HIST1H1B MUTATED	0	1	3
HIST1H1B WILD-TYPE	31	34	21

'HIST1H1B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.343 (Fisher's exact test), Q value = 1

Table S2731. Gene #342: 'HIST1H1B MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
HIST1H1B MUTATED	1	1	2
HIST1H1B WILD-TYPE	39	24	17

'HIST1H1B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0263 (Fisher's exact test), Q value = 1

Table S2732. Gene #342: 'HIST1H1B MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
HIST1H1B MUTATED	1	2	1
HIST1H1B WILD-TYPE	0	29	51

Figure S214. Get High-res Image Gene #342: 'HIST1H1B MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'HIST1H1B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0525 (Fisher's exact test), Q value = 1

Table S2733. Gene #342: 'HIST1H1B MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
HIST1H1B MUTATED	0	1	2	1
HIST1H1B WILD-TYPE	31	19	9	21

'HIST1H1B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0659 (Fisher's exact test), Q value = 1

Table S2734. Gene #342: 'HIST1H1B MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
HIST1H1B MUTATED	0	2	2
HIST1H1B WILD-TYPE	37	14	29

'HIST1H1B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.107 (Fisher's exact test), Q value = 1

Table S2735. Gene #342: 'HIST1H1B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
HIST1H1B MUTATED	0	2	2
HIST1H1B WILD-TYPE	38	18	24

'HIST1H1B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.104 (Fisher's exact test), Q value = 1

Table S2736. Gene #342: 'HIST1H1B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
HIST1H1B MUTATED	2	2	0
HIST1H1B WILD-TYPE	25	17	38

'UTRN MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2737. Gene #343: 'UTRN MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
UTRN MUTATED	1	3	1
UTRN WILD-TYPE	23	42	20

'UTRN MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.622 (Fisher's exact test), Q value = 1

Table S2738. Gene #343: 'UTRN MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
UTRN MUTATED	2	1	2
UTRN WILD-TYPE	29	34	22

'UTRN MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.5 (Fisher's exact test), Q value = 1

Table S2739. Gene #343: 'UTRN MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
UTRN MUTATED	4	1	0
UTRN WILD-TYPE	36	24	19

'UTRN MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.065 (Fisher's exact test), Q value = 1

Table S2740. Gene #343: 'UTRN MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
UTRN MUTATED	1	1	3
UTRN WILD-TYPE	0	30	49

'UTRN MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.388 (Fisher's exact test), Q value = 1

Table S2741. Gene #343: 'UTRN MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
UTRN MUTATED	3	2	0	0
UTRN WILD-TYPE	28	18	11	22

'UTRN MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.598 (Fisher's exact test), Q value = 1

Table S2742. Gene #343: 'UTRN MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
UTRN MUTATED	2	0	3
UTRN WILD-TYPE	35	16	28

'UTRN MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.247 (Fisher's exact test), Q value = 1

Table S2743. Gene #343: 'UTRN MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
UTRN MUTATED	3	2	0
UTRN WILD-TYPE	35	18	26

'UTRN MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.603 (Fisher's exact test), Q value = 1

Table S2744. Gene #343: 'UTRN MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
UTRN MUTATED	2	0	3
UTRN WILD-TYPE	25	19	35

'MAGEC1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.284 (Fisher's exact test), Q value = 1

Table S2745. Gene #344: 'MAGEC1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
MAGEC1 MUTATED	3	9	1
MAGEC1 WILD-TYPE	21	36	20

'MAGEC1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.477 (Fisher's exact test), Q value = 1

Table S2746. Gene #344: 'MAGEC1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
MAGEC1 MUTATED	3	7	3
MAGEC1 WILD-TYPE	28	28	21

'MAGEC1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.738 (Fisher's exact test), Q value = 1

Table S2747. Gene #344: 'MAGEC1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
MAGEC1 MUTATED	6	3	4
MAGEC1 WILD-TYPE	34	22	15

'MAGEC1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.171 (Fisher's exact test), Q value = 1

Table S2748. Gene #344: 'MAGEC1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
MAGEC1 MUTATED	1	5	7
MAGEC1 WILD-TYPE	0	26	45

'MAGEC1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.553 (Fisher's exact test), Q value = 1

Table S2749. Gene #344: 'MAGEC1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
MAGEC1 MUTATED	3	4	1	5
MAGEC1 WILD-TYPE	28	16	10	17

'MAGEC1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.875 (Fisher's exact test), Q value = 1

Table S2750. Gene #344: 'MAGEC1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
MAGEC1 MUTATED	5	3	5
MAGEC1 WILD-TYPE	32	13	26

'MAGEC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.925 (Fisher's exact test), Q value = 1

Table S2751. Gene #344: 'MAGEC1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
MAGEC1 MUTATED	5	3	5
MAGEC1 WILD-TYPE	33	17	21

'MAGEC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.684 (Fisher's exact test), Q value = 1

Table S2752. Gene #344: 'MAGEC1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
MAGEC1 MUTATED	4	4	5
MAGEC1 WILD-TYPE	23	15	33

'NUDT19 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.805 (Fisher's exact test), Q value = 1

Table S2753. Gene #345: 'NUDT19 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
NUDT19 MUTATED	1	3	0
NUDT19 WILD-TYPE	23	42	21

'NUDT19 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.674 (Fisher's exact test), Q value = 1

Table S2754. Gene #345: 'NUDT19 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
NUDT19 MUTATED	1	1	2
NUDT19 WILD-TYPE	30	34	22

'NUDT19 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.255 (Fisher's exact test), Q value = 1

Table S2755. Gene #345: 'NUDT19 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
NUDT19 MUTATED	2	0	2
NUDT19 WILD-TYPE	38	25	17

'NUDT19 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0263 (Fisher's exact test), Q value = 1

Table S2756. Gene #345: 'NUDT19 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
NUDT19 MUTATED	1	2	1
NUDT19 WILD-TYPE	0	29	51

Figure S215. Get High-res Image Gene #345: 'NUDT19 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'NUDT19 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.129 (Fisher's exact test), Q value = 1

Table S2757. Gene #345: 'NUDT19 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
NUDT19 MUTATED	1	1	2	0
NUDT19 WILD-TYPE	30	19	9	22

'NUDT19 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.315 (Fisher's exact test), Q value = 1

Table S2758. Gene #345: 'NUDT19 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
NUDT19 MUTATED	1	2	1
NUDT19 WILD-TYPE	36	14	30

'NUDT19 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.811 (Fisher's exact test), Q value = 1

Table S2759. Gene #345: 'NUDT19 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
NUDT19 MUTATED	1	1	2
NUDT19 WILD-TYPE	37	19	24

'NUDT19 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.436 (Fisher's exact test), Q value = 1

Table S2760. Gene #345: 'NUDT19 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
NUDT19 MUTATED	1	2	1
NUDT19 WILD-TYPE	26	17	37

'DDX60 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.538 (Fisher's exact test), Q value = 1

Table S2761. Gene #346: 'DDX60 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
DDX60 MUTATED	3	7	1
DDX60 WILD-TYPE	21	38	20

'DDX60 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.468 (Fisher's exact test), Q value = 1

Table S2762. Gene #346: 'DDX60 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
DDX60 MUTATED	2	6	3
DDX60 WILD-TYPE	29	29	21

'DDX60 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0168 (Fisher's exact test), Q value = 1

Table S2763. Gene #346: 'DDX60 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
DDX60 MUTATED	6	0	5
DDX60 WILD-TYPE	34	25	14

Figure S216. Get High-res Image Gene #346: 'DDX60 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

'DDX60 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0783 (Fisher's exact test), Q value = 1

Table S2764. Gene #346: 'DDX60 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
DDX60 MUTATED	1	5	5
DDX60 WILD-TYPE	0	26	47

'DDX60 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.938 (Fisher's exact test), Q value = 1

Table S2765. Gene #346: 'DDX60 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
DDX60 MUTATED	4	2	2	3
DDX60 WILD-TYPE	27	18	9	19

'DDX60 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.22 (Fisher's exact test), Q value = 1

Table S2766. Gene #346: 'DDX60 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
DDX60 MUTATED	5	4	2
DDX60 WILD-TYPE	32	12	29

'DDX60 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.92 (Fisher's exact test), Q value = 1

Table S2767. Gene #346: 'DDX60 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
DDX60 MUTATED	5	2	4
DDX60 WILD-TYPE	33	18	22

'DDX60 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.38 (Fisher's exact test), Q value = 1

Table S2768. Gene #346: 'DDX60 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
DDX60 MUTATED	2	4	5
DDX60 WILD-TYPE	25	15	33

'SLCO1B3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.636 (Fisher's exact test), Q value = 1

Table S2769. Gene #347: 'SLCO1B3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
SLCO1B3 MUTATED	3	3	2
SLCO1B3 WILD-TYPE	21	42	19

'SLCO1B3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.293 (Fisher's exact test), Q value = 1

Table S2770. Gene #347: 'SLCO1B3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
SLCO1B3 MUTATED	5	2	1
SLCO1B3 WILD-TYPE	26	33	23

'SLCO1B3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.121 (Fisher's exact test), Q value = 1

Table S2771. Gene #347: 'SLCO1B3 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
SLCO1B3 MUTATED	6	0	2
SLCO1B3 WILD-TYPE	34	25	17

'SLCO1B3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.11 (Fisher's exact test), Q value = 1

Table S2772. Gene #347: 'SLCO1B3 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
SLCO1B3 MUTATED	1	2	5
SLCO1B3 WILD-TYPE	0	29	47

'SLCO1B3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.565 (Fisher's exact test), Q value = 1

Table S2773. Gene #347: 'SLCO1B3 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
SLCO1B3 MUTATED	5	1	1	1
SLCO1B3 WILD-TYPE	26	19	10	21

'SLCO1B3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.621 (Fisher's exact test), Q value = 1

Table S2774. Gene #347: 'SLCO1B3 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
SLCO1B3 MUTATED	5	1	2
SLCO1B3 WILD-TYPE	32	15	29

'SLCO1B3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.712 (Fisher's exact test), Q value = 1

Table S2775. Gene #347: 'SLCO1B3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
SLCO1B3 MUTATED	5	1	2
SLCO1B3 WILD-TYPE	33	19	24

'SLCO1B3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.707 (Fisher's exact test), Q value = 1

Table S2776. Gene #347: 'SLCO1B3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
SLCO1B3 MUTATED	2	1	5
SLCO1B3 WILD-TYPE	25	18	33

'INTS6 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2777. Gene #348: 'INTS6 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
INTS6 MUTATED	1	2	0
INTS6 WILD-TYPE	23	43	21

'INTS6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.778 (Fisher's exact test), Q value = 1

Table S2778. Gene #348: 'INTS6 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
INTS6 MUTATED	1	2	0
INTS6 WILD-TYPE	30	33	24

'INTS6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0792 (Fisher's exact test), Q value = 1

Table S2779. Gene #348: 'INTS6 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
INTS6 MUTATED	0	1	2
INTS6 WILD-TYPE	40	24	17

'INTS6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.569 (Fisher's exact test), Q value = 1

Table S2780. Gene #348: 'INTS6 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
INTS6 MUTATED	0	2	1
INTS6 WILD-TYPE	1	29	51

'INTS6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.26 (Fisher's exact test), Q value = 1

Table S2781. Gene #348: 'INTS6 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
INTS6 MUTATED	0	1	0	2
INTS6 WILD-TYPE	31	19	11	20

'INTS6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.783 (Fisher's exact test), Q value = 1

Table S2782. Gene #348: 'INTS6 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
INTS6 MUTATED	1	1	1
INTS6 WILD-TYPE	36	15	30

'INTS6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.453 (Fisher's exact test), Q value = 1

Table S2783. Gene #348: 'INTS6 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
INTS6 MUTATED	1	0	2
INTS6 WILD-TYPE	37	20	24

'INTS6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S2784. Gene #348: 'INTS6 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
INTS6 MUTATED	1	1	1
INTS6 WILD-TYPE	26	18	37

'AP2A2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.356 (Fisher's exact test), Q value = 1

Table S2785. Gene #349: 'AP2A2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
AP2A2 MUTATED	0	4	2
AP2A2 WILD-TYPE	24	41	19

'AP2A2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.877 (Fisher's exact test), Q value = 1

Table S2786. Gene #349: 'AP2A2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
AP2A2 MUTATED	2	3	1
AP2A2 WILD-TYPE	29	32	23

'AP2A2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.755 (Fisher's exact test), Q value = 1

Table S2787. Gene #349: 'AP2A2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
AP2A2 MUTATED	3	1	2
AP2A2 WILD-TYPE	37	24	17

'AP2A2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0273 (Fisher's exact test), Q value = 1

Table S2788. Gene #349: 'AP2A2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
AP2A2 MUTATED	1	3	2
AP2A2 WILD-TYPE	0	28	50

Figure S217. Get High-res Image Gene #349: 'AP2A2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'AP2A2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0484 (Fisher's exact test), Q value = 1

Table S2789. Gene #349: 'AP2A2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
AP2A2 MUTATED	1	4	1	0
AP2A2 WILD-TYPE	30	16	10	22

Figure S218. Get High-res Image Gene #349: 'AP2A2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

'AP2A2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.235 (Fisher's exact test), Q value = 1

Table S2790. Gene #349: 'AP2A2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
AP2A2 MUTATED	1	1	4
AP2A2 WILD-TYPE	36	15	27

'AP2A2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0576 (Fisher's exact test), Q value = 1

Table S2791. Gene #349: 'AP2A2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
AP2A2 MUTATED	1	4	1
AP2A2 WILD-TYPE	37	16	25

'AP2A2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.191 (Fisher's exact test), Q value = 1

Table S2792. Gene #349: 'AP2A2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
AP2A2 MUTATED	4	1	1
AP2A2 WILD-TYPE	23	18	37

'SMYD5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.632 (Fisher's exact test), Q value = 1

Table S2793. Gene #350: 'SMYD5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
SMYD5 MUTATED	2	2	2
SMYD5 WILD-TYPE	22	43	19

'SMYD5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0838 (Fisher's exact test), Q value = 1

Table S2794. Gene #350: 'SMYD5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
SMYD5 MUTATED	3	0	3
SMYD5 WILD-TYPE	28	35	21

'SMYD5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.181 (Fisher's exact test), Q value = 1

Table S2795. Gene #350: 'SMYD5 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
SMYD5 MUTATED	5	0	1
SMYD5 WILD-TYPE	35	25	18

'SMYD5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.048 (Fisher's exact test), Q value = 1

Table S2796. Gene #350: 'SMYD5 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
SMYD5 MUTATED	1	1	4
SMYD5 WILD-TYPE	0	30	48

Figure S219. Get High-res Image Gene #350: 'SMYD5 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'SMYD5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.942 (Fisher's exact test), Q value = 1

Table S2797. Gene #350: 'SMYD5 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
SMYD5 MUTATED	3	1	1	1
SMYD5 WILD-TYPE	28	19	10	21

'SMYD5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.563 (Fisher's exact test), Q value = 1

Table S2798. Gene #350: 'SMYD5 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
SMYD5 MUTATED	4	1	1
SMYD5 WILD-TYPE	33	15	30

'SMYD5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.656 (Fisher's exact test), Q value = 1

Table S2799. Gene #350: 'SMYD5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
SMYD5 MUTATED	4	1	1
SMYD5 WILD-TYPE	34	19	25

'SMYD5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.566 (Fisher's exact test), Q value = 1

Table S2800. Gene #350: 'SMYD5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
SMYD5 MUTATED	1	1	4
SMYD5 WILD-TYPE	26	18	34

'CXORF66 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2801. Gene #351: 'CXORF66 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
CXORF66 MUTATED	1	2	1
CXORF66 WILD-TYPE	23	43	20

'CXORF66 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.557 (Fisher's exact test), Q value = 1

Table S2802. Gene #351: 'CXORF66 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
CXORF66 MUTATED	2	2	0
CXORF66 WILD-TYPE	29	33	24

'CXORF66 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.808 (Fisher's exact test), Q value = 1

Table S2803. Gene #351: 'CXORF66 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
CXORF66 MUTATED	3	1	0
CXORF66 WILD-TYPE	37	24	19

'CXORF66 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S2804. Gene #351: 'CXORF66 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
CXORF66 MUTATED	0	1	3
CXORF66 WILD-TYPE	1	30	49

'CXORF66 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.364 (Fisher's exact test), Q value = 1

Table S2805. Gene #351: 'CXORF66 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
CXORF66 MUTATED	1	0	1	2
CXORF66 WILD-TYPE	30	20	10	20

'CXORF66 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.526 (Fisher's exact test), Q value = 1

Table S2806. Gene #351: 'CXORF66 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
CXORF66 MUTATED	3	0	1
CXORF66 WILD-TYPE	34	16	30

'CXORF66 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.353 (Fisher's exact test), Q value = 1

Table S2807. Gene #351: 'CXORF66 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
CXORF66 MUTATED	3	1	0
CXORF66 WILD-TYPE	35	19	26

'CXORF66 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.554 (Fisher's exact test), Q value = 1

Table S2808. Gene #351: 'CXORF66 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
CXORF66 MUTATED	1	0	3
CXORF66 WILD-TYPE	26	19	35

'NKTR MUTATION STATUS' versus 'CN_CNMF'

P value = 0.356 (Fisher's exact test), Q value = 1

Table S2809. Gene #352: 'NKTR MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
NKTR MUTATED	0	4	2
NKTR WILD-TYPE	24	41	19

'NKTR MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.877 (Fisher's exact test), Q value = 1

Table S2810. Gene #352: 'NKTR MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
NKTR MUTATED	2	3	1
NKTR WILD-TYPE	29	32	23

'NKTR MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.651 (Fisher's exact test), Q value = 1

Table S2811. Gene #352: 'NKTR MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
NKTR MUTATED	2	2	2
NKTR WILD-TYPE	38	23	17

'NKTR MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00625 (Fisher's exact test), Q value = 1

Table S2812. Gene #352: 'NKTR MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
NKTR MUTATED	1	4	1
NKTR WILD-TYPE	0	27	51

Figure S220. Get High-res Image Gene #352: 'NKTR MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'NKTR MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.024 (Fisher's exact test), Q value = 1

Table S2813. Gene #352: 'NKTR MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
NKTR MUTATED	0	4	0	2
NKTR WILD-TYPE	31	16	11	20

Figure S221. Get High-res Image Gene #352: 'NKTR MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

'NKTR MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0314 (Fisher's exact test), Q value = 1

Table S2814. Gene #352: 'NKTR MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
NKTR MUTATED	0	1	5
NKTR WILD-TYPE	37	15	26

Figure S222. Get High-res Image Gene #352: 'NKTR MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'NKTR MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0102 (Fisher's exact test), Q value = 1

Table S2815. Gene #352: 'NKTR MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
NKTR MUTATED	0	4	2
NKTR WILD-TYPE	38	16	24

Figure S223. Get High-res Image Gene #352: 'NKTR MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

'NKTR MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00977 (Fisher's exact test), Q value = 1

Table S2816. Gene #352: 'NKTR MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
NKTR MUTATED	5	1	0
NKTR WILD-TYPE	22	18	38

Figure S224. Get High-res Image Gene #352: 'NKTR MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

'RTEL1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.774 (Fisher's exact test), Q value = 1

Table S2817. Gene #353: 'RTEL1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
RTEL1 MUTATED	1	4	2
RTEL1 WILD-TYPE	23	41	19

'RTEL1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.616 (Fisher's exact test), Q value = 1

Table S2818. Gene #353: 'RTEL1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
RTEL1 MUTATED	2	2	3
RTEL1 WILD-TYPE	29	33	21

'RTEL1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.193 (Fisher's exact test), Q value = 1

Table S2819. Gene #353: 'RTEL1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
RTEL1 MUTATED	5	0	2
RTEL1 WILD-TYPE	35	25	17

'RTEL1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0924 (Fisher's exact test), Q value = 1

Table S2820. Gene #353: 'RTEL1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
RTEL1 MUTATED	1	2	4
RTEL1 WILD-TYPE	0	29	48

'RTEL1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.9 (Fisher's exact test), Q value = 1

Table S2821. Gene #353: 'RTEL1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
RTEL1 MUTATED	3	2	1	1
RTEL1 WILD-TYPE	28	18	10	21

'RTEL1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.877 (Fisher's exact test), Q value = 1

Table S2822. Gene #353: 'RTEL1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
RTEL1 MUTATED	4	1	2
RTEL1 WILD-TYPE	33	15	29

'RTEL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.682 (Fisher's exact test), Q value = 1

Table S2823. Gene #353: 'RTEL1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
RTEL1 MUTATED	4	2	1
RTEL1 WILD-TYPE	34	18	25

'RTEL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.888 (Fisher's exact test), Q value = 1

Table S2824. Gene #353: 'RTEL1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
RTEL1 MUTATED	2	1	4
RTEL1 WILD-TYPE	25	18	34

'BCL9L MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2825. Gene #354: 'BCL9L MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
BCL9L MUTATED	2	3	1
BCL9L WILD-TYPE	22	42	20

'BCL9L MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.76 (Fisher's exact test), Q value = 1

Table S2826. Gene #354: 'BCL9L MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
BCL9L MUTATED	3	2	1
BCL9L WILD-TYPE	28	33	23

'BCL9L MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.219 (Fisher's exact test), Q value = 1

Table S2827. Gene #354: 'BCL9L MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
BCL9L MUTATED	4	0	2
BCL9L WILD-TYPE	36	25	17

'BCL9L MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.095 (Fisher's exact test), Q value = 1

Table S2828. Gene #354: 'BCL9L MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
BCL9L MUTATED	1	2	3
BCL9L WILD-TYPE	0	29	49

'BCL9L MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.189 (Fisher's exact test), Q value = 1

Table S2829. Gene #354: 'BCL9L MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
BCL9L MUTATED	3	1	2	0
BCL9L WILD-TYPE	28	19	9	22

'BCL9L MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.406 (Fisher's exact test), Q value = 1

Table S2830. Gene #354: 'BCL9L MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
BCL9L MUTATED	3	2	1
BCL9L WILD-TYPE	34	14	30

'BCL9L MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2831. Gene #354: 'BCL9L MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
BCL9L MUTATED	3	1	2
BCL9L WILD-TYPE	35	19	24

'BCL9L MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.662 (Fisher's exact test), Q value = 1

Table S2832. Gene #354: 'BCL9L MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
BCL9L MUTATED	1	2	3
BCL9L WILD-TYPE	26	17	35

'DDX5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.593 (Fisher's exact test), Q value = 1

Table S2833. Gene #355: 'DDX5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
DDX5 MUTATED	2	3	0
DDX5 WILD-TYPE	22	42	21

'DDX5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.849 (Fisher's exact test), Q value = 1

Table S2834. Gene #355: 'DDX5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
DDX5 MUTATED	1	2	2
DDX5 WILD-TYPE	30	33	22

'DDX5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2835. Gene #355: 'DDX5 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
DDX5 MUTATED	3	1	1
DDX5 WILD-TYPE	37	24	18

'DDX5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0428 (Fisher's exact test), Q value = 1

Table S2836. Gene #355: 'DDX5 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
DDX5 MUTATED	1	2	2
DDX5 WILD-TYPE	0	29	50

Figure S225. Get High-res Image Gene #355: 'DDX5 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'DDX5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.927 (Fisher's exact test), Q value = 1

Table S2837. Gene #355: 'DDX5 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
DDX5 MUTATED	2	1	0	2
DDX5 WILD-TYPE	29	19	11	20

'DDX5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S2838. Gene #355: 'DDX5 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
DDX5 MUTATED	2	1	2
DDX5 WILD-TYPE	35	15	29

'DDX5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2839. Gene #355: 'DDX5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
DDX5 MUTATED	2	1	2
DDX5 WILD-TYPE	36	19	24

'DDX5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S2840. Gene #355: 'DDX5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
DDX5 MUTATED	2	1	2
DDX5 WILD-TYPE	25	18	36

'PCDHB2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.868 (Fisher's exact test), Q value = 1

Table S2841. Gene #356: 'PCDHB2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
PCDHB2 MUTATED	1	4	1
PCDHB2 WILD-TYPE	23	41	20

'PCDHB2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.877 (Fisher's exact test), Q value = 1

Table S2842. Gene #356: 'PCDHB2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
PCDHB2 MUTATED	2	3	1
PCDHB2 WILD-TYPE	29	32	23

'PCDHB2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2843. Gene #356: 'PCDHB2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
PCDHB2 MUTATED	3	2	1
PCDHB2 WILD-TYPE	37	23	18

'PCDHB2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0273 (Fisher's exact test), Q value = 1

Table S2844. Gene #356: 'PCDHB2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
PCDHB2 MUTATED	1	3	2
PCDHB2 WILD-TYPE	0	28	50

Figure S226. Get High-res Image Gene #356: 'PCDHB2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'PCDHB2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.582 (Fisher's exact test), Q value = 1

Table S2845. Gene #356: 'PCDHB2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
PCDHB2 MUTATED	2	3	0	1
PCDHB2 WILD-TYPE	29	17	11	21

'PCDHB2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.858 (Fisher's exact test), Q value = 1

Table S2846. Gene #356: 'PCDHB2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
PCDHB2 MUTATED	2	1	3
PCDHB2 WILD-TYPE	35	15	28

'PCDHB2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.358 (Fisher's exact test), Q value = 1

Table S2847. Gene #356: 'PCDHB2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
PCDHB2 MUTATED	2	3	1
PCDHB2 WILD-TYPE	36	17	25

'PCDHB2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.758 (Fisher's exact test), Q value = 1

Table S2848. Gene #356: 'PCDHB2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
PCDHB2 MUTATED	3	1	2
PCDHB2 WILD-TYPE	24	18	36

'GBP5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.593 (Fisher's exact test), Q value = 1

Table S2849. Gene #357: 'GBP5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
GBP5 MUTATED	2	3	0
GBP5 WILD-TYPE	22	42	21

'GBP5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.849 (Fisher's exact test), Q value = 1

Table S2850. Gene #357: 'GBP5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
GBP5 MUTATED	1	2	2
GBP5 WILD-TYPE	30	33	22

'GBP5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2851. Gene #357: 'GBP5 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
GBP5 MUTATED	3	1	1
GBP5 WILD-TYPE	37	24	18

'GBP5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0428 (Fisher's exact test), Q value = 1

Table S2852. Gene #357: 'GBP5 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
GBP5 MUTATED	1	2	2
GBP5 WILD-TYPE	0	29	50

Figure S227. Get High-res Image Gene #357: 'GBP5 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'GBP5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.45 (Fisher's exact test), Q value = 1

Table S2853. Gene #357: 'GBP5 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
GBP5 MUTATED	2	2	1	0
GBP5 WILD-TYPE	29	18	10	22

'GBP5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.598 (Fisher's exact test), Q value = 1

Table S2854. Gene #357: 'GBP5 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
GBP5 MUTATED	2	0	3
GBP5 WILD-TYPE	35	16	28

'GBP5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.71 (Fisher's exact test), Q value = 1

Table S2855. Gene #357: 'GBP5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
GBP5 MUTATED	2	2	1
GBP5 WILD-TYPE	36	18	25

'GBP5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.365 (Fisher's exact test), Q value = 1

Table S2856. Gene #357: 'GBP5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
GBP5 MUTATED	3	0	2
GBP5 WILD-TYPE	24	19	36

'SCYL3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.511 (Fisher's exact test), Q value = 1

Table S2857. Gene #358: 'SCYL3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
SCYL3 MUTATED	1	3	3
SCYL3 WILD-TYPE	23	42	18

'SCYL3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.191 (Fisher's exact test), Q value = 1

Table S2858. Gene #358: 'SCYL3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
SCYL3 MUTATED	1	2	4
SCYL3 WILD-TYPE	30	33	20

'SCYL3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.305 (Fisher's exact test), Q value = 1

Table S2859. Gene #358: 'SCYL3 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
SCYL3 MUTATED	5	2	0
SCYL3 WILD-TYPE	35	23	19

'SCYL3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0924 (Fisher's exact test), Q value = 1

Table S2860. Gene #358: 'SCYL3 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
SCYL3 MUTATED	1	2	4
SCYL3 WILD-TYPE	0	29	48

'SCYL3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.539 (Fisher's exact test), Q value = 1

Table S2861. Gene #358: 'SCYL3 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
SCYL3 MUTATED	3	3	0	1
SCYL3 WILD-TYPE	28	17	11	21

'SCYL3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.519 (Fisher's exact test), Q value = 1

Table S2862. Gene #358: 'SCYL3 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
SCYL3 MUTATED	4	0	3
SCYL3 WILD-TYPE	33	16	28

'SCYL3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.525 (Fisher's exact test), Q value = 1

Table S2863. Gene #358: 'SCYL3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
SCYL3 MUTATED	5	1	1
SCYL3 WILD-TYPE	33	19	25

'SCYL3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.313 (Fisher's exact test), Q value = 1

Table S2864. Gene #358: 'SCYL3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
SCYL3 MUTATED	3	0	4
SCYL3 WILD-TYPE	24	19	34

'RERE MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2865. Gene #359: 'RERE MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
RERE MUTATED	2	3	1
RERE WILD-TYPE	22	42	20

'RERE MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.76 (Fisher's exact test), Q value = 1

Table S2866. Gene #359: 'RERE MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
RERE MUTATED	3	2	1
RERE WILD-TYPE	28	33	23

'RERE MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.299 (Fisher's exact test), Q value = 1

Table S2867. Gene #359: 'RERE MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
RERE MUTATED	5	1	0
RERE WILD-TYPE	35	24	19

'RERE MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.048 (Fisher's exact test), Q value = 1

Table S2868. Gene #359: 'RERE MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
RERE MUTATED	1	1	4
RERE WILD-TYPE	0	30	48

Figure S228. Get High-res Image Gene #359: 'RERE MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'RERE MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.785 (Fisher's exact test), Q value = 1

Table S2869. Gene #359: 'RERE MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
RERE MUTATED	2	2	0	2
RERE WILD-TYPE	29	18	11	20

'RERE MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.482 (Fisher's exact test), Q value = 1

Table S2870. Gene #359: 'RERE MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
RERE MUTATED	4	0	2
RERE WILD-TYPE	33	16	29

'RERE MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.758 (Fisher's exact test), Q value = 1

Table S2871. Gene #359: 'RERE MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
RERE MUTATED	3	2	1
RERE WILD-TYPE	35	18	25

'RERE MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S2872. Gene #359: 'RERE MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
RERE MUTATED	2	1	3
RERE WILD-TYPE	25	18	35

'CDHR5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.591 (Fisher's exact test), Q value = 1

Table S2873. Gene #360: 'CDHR5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
CDHR5 MUTATED	3	3	1
CDHR5 WILD-TYPE	21	42	20

'CDHR5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.219 (Fisher's exact test), Q value = 1

Table S2874. Gene #360: 'CDHR5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
CDHR5 MUTATED	4	3	0
CDHR5 WILD-TYPE	27	32	24

'CDHR5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.455 (Fisher's exact test), Q value = 1

Table S2875. Gene #360: 'CDHR5 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
CDHR5 MUTATED	3	1	3
CDHR5 WILD-TYPE	37	24	16

'CDHR5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S2876. Gene #360: 'CDHR5 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
CDHR5 MUTATED	0	3	4
CDHR5 WILD-TYPE	1	28	48

'CDHR5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.71 (Fisher's exact test), Q value = 1

Table S2877. Gene #360: 'CDHR5 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
CDHR5 MUTATED	3	1	0	3
CDHR5 WILD-TYPE	28	19	11	19

'CDHR5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S2878. Gene #360: 'CDHR5 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
CDHR5 MUTATED	3	1	3
CDHR5 WILD-TYPE	34	15	28

'CDHR5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.602 (Fisher's exact test), Q value = 1

Table S2879. Gene #360: 'CDHR5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
CDHR5 MUTATED	2	2	3
CDHR5 WILD-TYPE	36	18	23

'CDHR5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.888 (Fisher's exact test), Q value = 1

Table S2880. Gene #360: 'CDHR5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
CDHR5 MUTATED	2	1	4
CDHR5 WILD-TYPE	25	18	34

'SATB1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.169 (Fisher's exact test), Q value = 1

Table S2881. Gene #361: 'SATB1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
SATB1 MUTATED	1	6	0
SATB1 WILD-TYPE	23	39	21

'SATB1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.895 (Fisher's exact test), Q value = 1

Table S2882. Gene #361: 'SATB1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
SATB1 MUTATED	2	4	2
SATB1 WILD-TYPE	29	31	22

'SATB1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.801 (Fisher's exact test), Q value = 1

Table S2883. Gene #361: 'SATB1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
SATB1 MUTATED	3	3	2
SATB1 WILD-TYPE	37	22	17

'SATB1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.138 (Fisher's exact test), Q value = 1

Table S2884. Gene #361: 'SATB1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
SATB1 MUTATED	1	3	4
SATB1 WILD-TYPE	0	28	48

'SATB1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.637 (Fisher's exact test), Q value = 1

Table S2885. Gene #361: 'SATB1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
SATB1 MUTATED	2	2	2	2
SATB1 WILD-TYPE	29	18	9	20

'SATB1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.058 (Fisher's exact test), Q value = 1

Table S2886. Gene #361: 'SATB1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
SATB1 MUTATED	1	1	6
SATB1 WILD-TYPE	36	15	25

'SATB1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.244 (Fisher's exact test), Q value = 1

Table S2887. Gene #361: 'SATB1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
SATB1 MUTATED	2	4	2
SATB1 WILD-TYPE	36	16	24

'SATB1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.124 (Fisher's exact test), Q value = 1

Table S2888. Gene #361: 'SATB1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
SATB1 MUTATED	5	0	3
SATB1 WILD-TYPE	22	19	35

'SMCR7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.27 (Fisher's exact test), Q value = 1

Table S2889. Gene #362: 'SMCR7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
SMCR7 MUTATED	2	6	0
SMCR7 WILD-TYPE	22	39	21

'SMCR7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.743 (Fisher's exact test), Q value = 1

Table S2890. Gene #362: 'SMCR7 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
SMCR7 MUTATED	2	4	3
SMCR7 WILD-TYPE	29	31	21

'SMCR7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.481 (Fisher's exact test), Q value = 1

Table S2891. Gene #362: 'SMCR7 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
SMCR7 MUTATED	3	4	2
SMCR7 WILD-TYPE	37	21	17

'SMCR7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0703 (Fisher's exact test), Q value = 1

Table S2892. Gene #362: 'SMCR7 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
SMCR7 MUTATED	1	4	4
SMCR7 WILD-TYPE	0	27	48

'SMCR7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.238 (Fisher's exact test), Q value = 1

Table S2893. Gene #362: 'SMCR7 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
SMCR7 MUTATED	1	4	1	3
SMCR7 WILD-TYPE	30	16	10	19

'SMCR7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.341 (Fisher's exact test), Q value = 1

Table S2894. Gene #362: 'SMCR7 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
SMCR7 MUTATED	2	2	5
SMCR7 WILD-TYPE	35	14	26

'SMCR7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0984 (Fisher's exact test), Q value = 1

Table S2895. Gene #362: 'SMCR7 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
SMCR7 MUTATED	2	5	2
SMCR7 WILD-TYPE	36	15	24

'SMCR7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.254 (Fisher's exact test), Q value = 1

Table S2896. Gene #362: 'SMCR7 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
SMCR7 MUTATED	5	2	2
SMCR7 WILD-TYPE	22	17	36

'ZNF548 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.473 (Fisher's exact test), Q value = 1

Table S2897. Gene #363: 'ZNF548 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
ZNF548 MUTATED	2	4	0
ZNF548 WILD-TYPE	22	41	21

'ZNF548 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.657 (Fisher's exact test), Q value = 1

Table S2898. Gene #363: 'ZNF548 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
ZNF548 MUTATED	1	3	2
ZNF548 WILD-TYPE	30	32	22

'ZNF548 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2899. Gene #363: 'ZNF548 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
ZNF548 MUTATED	3	2	1
ZNF548 WILD-TYPE	37	23	18

'ZNF548 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.095 (Fisher's exact test), Q value = 1

Table S2900. Gene #363: 'ZNF548 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
ZNF548 MUTATED	1	2	3
ZNF548 WILD-TYPE	0	29	49

'ZNF548 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.888 (Fisher's exact test), Q value = 1

Table S2901. Gene #363: 'ZNF548 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
ZNF548 MUTATED	2	2	1	1
ZNF548 WILD-TYPE	29	18	10	21

'ZNF548 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.858 (Fisher's exact test), Q value = 1

Table S2902. Gene #363: 'ZNF548 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
ZNF548 MUTATED	2	1	3
ZNF548 WILD-TYPE	35	15	28

'ZNF548 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.758 (Fisher's exact test), Q value = 1

Table S2903. Gene #363: 'ZNF548 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
ZNF548 MUTATED	3	2	1
ZNF548 WILD-TYPE	35	18	25

'ZNF548 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.758 (Fisher's exact test), Q value = 1

Table S2904. Gene #363: 'ZNF548 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
ZNF548 MUTATED	3	1	2
ZNF548 WILD-TYPE	24	18	36

'DHX36 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.123 (Fisher's exact test), Q value = 1

Table S2905. Gene #364: 'DHX36 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
DHX36 MUTATED	0	6	3
DHX36 WILD-TYPE	24	39	18

'DHX36 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.743 (Fisher's exact test), Q value = 1

Table S2906. Gene #364: 'DHX36 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
DHX36 MUTATED	2	4	3
DHX36 WILD-TYPE	29	31	21

'DHX36 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2907. Gene #364: 'DHX36 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
DHX36 MUTATED	4	3	2
DHX36 WILD-TYPE	36	22	17

'DHX36 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0359 (Fisher's exact test), Q value = 1

Table S2908. Gene #364: 'DHX36 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
DHX36 MUTATED	1	5	3
DHX36 WILD-TYPE	0	26	49

Figure S229. Get High-res Image Gene #364: 'DHX36 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'DHX36 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.47 (Fisher's exact test), Q value = 1

Table S2909. Gene #364: 'DHX36 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
DHX36 MUTATED	2	4	1	2
DHX36 WILD-TYPE	29	16	10	20

'DHX36 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.728 (Fisher's exact test), Q value = 1

Table S2910. Gene #364: 'DHX36 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
DHX36 MUTATED	3	2	4
DHX36 WILD-TYPE	34	14	27

'DHX36 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.672 (Fisher's exact test), Q value = 1

Table S2911. Gene #364: 'DHX36 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
DHX36 MUTATED	3	3	3
DHX36 WILD-TYPE	35	17	23

'DHX36 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.742 (Fisher's exact test), Q value = 1

Table S2912. Gene #364: 'DHX36 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
DHX36 MUTATED	4	2	3
DHX36 WILD-TYPE	23	17	35

'MMP14 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.473 (Fisher's exact test), Q value = 1

Table S2913. Gene #365: 'MMP14 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
MMP14 MUTATED	2	4	0
MMP14 WILD-TYPE	22	41	21

'MMP14 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2914. Gene #365: 'MMP14 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
MMP14 MUTATED	2	2	2
MMP14 WILD-TYPE	29	33	22

'MMP14 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.651 (Fisher's exact test), Q value = 1

Table S2915. Gene #365: 'MMP14 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
MMP14 MUTATED	2	2	2
MMP14 WILD-TYPE	38	23	17

'MMP14 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.095 (Fisher's exact test), Q value = 1

Table S2916. Gene #365: 'MMP14 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
MMP14 MUTATED	1	2	3
MMP14 WILD-TYPE	0	29	49

'MMP14 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.888 (Fisher's exact test), Q value = 1

Table S2917. Gene #365: 'MMP14 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
MMP14 MUTATED	2	2	1	1
MMP14 WILD-TYPE	29	18	10	21

'MMP14 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.235 (Fisher's exact test), Q value = 1

Table S2918. Gene #365: 'MMP14 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
MMP14 MUTATED	1	1	4
MMP14 WILD-TYPE	36	15	27

'MMP14 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.358 (Fisher's exact test), Q value = 1

Table S2919. Gene #365: 'MMP14 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
MMP14 MUTATED	2	3	1
MMP14 WILD-TYPE	36	17	25

'MMP14 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.191 (Fisher's exact test), Q value = 1

Table S2920. Gene #365: 'MMP14 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
MMP14 MUTATED	4	1	1
MMP14 WILD-TYPE	23	18	37

'ZMYND8 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.345 (Fisher's exact test), Q value = 1

Table S2921. Gene #366: 'ZMYND8 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
ZMYND8 MUTATED	2	5	0
ZMYND8 WILD-TYPE	22	40	21

'ZMYND8 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.789 (Fisher's exact test), Q value = 1

Table S2922. Gene #366: 'ZMYND8 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
ZMYND8 MUTATED	3	3	1
ZMYND8 WILD-TYPE	28	32	23

'ZMYND8 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.773 (Fisher's exact test), Q value = 1

Table S2923. Gene #366: 'ZMYND8 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
ZMYND8 MUTATED	3	3	1
ZMYND8 WILD-TYPE	37	22	18

'ZMYND8 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0646 (Fisher's exact test), Q value = 1

Table S2924. Gene #366: 'ZMYND8 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
ZMYND8 MUTATED	1	3	3
ZMYND8 WILD-TYPE	0	28	49

'ZMYND8 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.592 (Fisher's exact test), Q value = 1

Table S2925. Gene #366: 'ZMYND8 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
ZMYND8 MUTATED	2	3	0	2
ZMYND8 WILD-TYPE	29	17	11	20

'ZMYND8 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.154 (Fisher's exact test), Q value = 1

Table S2926. Gene #366: 'ZMYND8 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
ZMYND8 MUTATED	2	0	5
ZMYND8 WILD-TYPE	35	16	26

'ZMYND8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2927. Gene #366: 'ZMYND8 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
ZMYND8 MUTATED	3	2	2
ZMYND8 WILD-TYPE	35	18	24

'ZMYND8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.226 (Fisher's exact test), Q value = 1

Table S2928. Gene #366: 'ZMYND8 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
ZMYND8 MUTATED	4	0	3
ZMYND8 WILD-TYPE	23	19	35

'TRERF1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.747 (Fisher's exact test), Q value = 1

Table S2929. Gene #367: 'TRERF1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
TRERF1 MUTATED	1	3	2
TRERF1 WILD-TYPE	23	42	19

'TRERF1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.375 (Fisher's exact test), Q value = 1

Table S2930. Gene #367: 'TRERF1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
TRERF1 MUTATED	2	1	3
TRERF1 WILD-TYPE	29	34	21

'TRERF1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.651 (Fisher's exact test), Q value = 1

Table S2931. Gene #367: 'TRERF1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
TRERF1 MUTATED	2	2	2
TRERF1 WILD-TYPE	38	23	17

'TRERF1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.095 (Fisher's exact test), Q value = 1

Table S2932. Gene #367: 'TRERF1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
TRERF1 MUTATED	1	2	3
TRERF1 WILD-TYPE	0	29	49

'TRERF1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.785 (Fisher's exact test), Q value = 1

Table S2933. Gene #367: 'TRERF1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
TRERF1 MUTATED	2	2	0	2
TRERF1 WILD-TYPE	29	18	11	20

'TRERF1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.284 (Fisher's exact test), Q value = 1

Table S2934. Gene #367: 'TRERF1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
TRERF1 MUTATED	1	2	3
TRERF1 WILD-TYPE	36	14	28

'TRERF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2935. Gene #367: 'TRERF1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
TRERF1 MUTATED	3	1	2
TRERF1 WILD-TYPE	35	19	24

'TRERF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.862 (Fisher's exact test), Q value = 1

Table S2936. Gene #367: 'TRERF1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
TRERF1 MUTATED	2	2	2
TRERF1 WILD-TYPE	25	17	36

'CYP4F3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.428 (Fisher's exact test), Q value = 1

Table S2937. Gene #368: 'CYP4F3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
CYP4F3 MUTATED	0	3	0
CYP4F3 WILD-TYPE	24	42	21

'CYP4F3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.111 (Fisher's exact test), Q value = 1

Table S2938. Gene #368: 'CYP4F3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
CYP4F3 MUTATED	0	3	0
CYP4F3 WILD-TYPE	31	32	24

'CYP4F3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0792 (Fisher's exact test), Q value = 1

Table S2939. Gene #368: 'CYP4F3 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
CYP4F3 MUTATED	0	1	2
CYP4F3 WILD-TYPE	40	24	17

'CYP4F3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0829 (Fisher's exact test), Q value = 1

Table S2940. Gene #368: 'CYP4F3 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
CYP4F3 MUTATED	0	3	0
CYP4F3 WILD-TYPE	1	28	52

'CYP4F3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.311 (Fisher's exact test), Q value = 1

Table S2941. Gene #368: 'CYP4F3 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
CYP4F3 MUTATED	0	1	1	1
CYP4F3 WILD-TYPE	31	19	10	21

'CYP4F3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.217 (Fisher's exact test), Q value = 1

Table S2942. Gene #368: 'CYP4F3 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
CYP4F3 MUTATED	0	1	2
CYP4F3 WILD-TYPE	37	15	29

'CYP4F3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.159 (Fisher's exact test), Q value = 1

Table S2943. Gene #368: 'CYP4F3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
CYP4F3 MUTATED	0	1	2
CYP4F3 WILD-TYPE	38	19	24

'CYP4F3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.228 (Fisher's exact test), Q value = 1

Table S2944. Gene #368: 'CYP4F3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
CYP4F3 MUTATED	2	1	0
CYP4F3 WILD-TYPE	25	18	38

'SYNPO2L MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0506 (Fisher's exact test), Q value = 1

Table S2945. Gene #369: 'SYNPO2L MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
SYNPO2L MUTATED	0	6	0
SYNPO2L WILD-TYPE	24	39	21

'SYNPO2L MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.497 (Fisher's exact test), Q value = 1

Table S2946. Gene #369: 'SYNPO2L MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
SYNPO2L MUTATED	1	4	1
SYNPO2L WILD-TYPE	30	31	23

'SYNPO2L MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.861 (Fisher's exact test), Q value = 1

Table S2947. Gene #369: 'SYNPO2L MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
SYNPO2L MUTATED	4	1	1
SYNPO2L WILD-TYPE	36	24	18

'SYNPO2L MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.048 (Fisher's exact test), Q value = 1

Table S2948. Gene #369: 'SYNPO2L MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
SYNPO2L MUTATED	1	1	4
SYNPO2L WILD-TYPE	0	30	48

Figure S230. Get High-res Image Gene #369: 'SYNPO2L MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'SYNPO2L MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.498 (Fisher's exact test), Q value = 1

Table S2949. Gene #369: 'SYNPO2L MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
SYNPO2L MUTATED	1	1	1	3
SYNPO2L WILD-TYPE	30	19	10	19

'SYNPO2L MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S2950. Gene #369: 'SYNPO2L MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
SYNPO2L MUTATED	3	1	2
SYNPO2L WILD-TYPE	34	15	29

'SYNPO2L MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.865 (Fisher's exact test), Q value = 1

Table S2951. Gene #369: 'SYNPO2L MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
SYNPO2L MUTATED	2	2	2
SYNPO2L WILD-TYPE	36	18	24

'SYNPO2L MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.862 (Fisher's exact test), Q value = 1

Table S2952. Gene #369: 'SYNPO2L MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
SYNPO2L MUTATED	2	2	2
SYNPO2L WILD-TYPE	25	17	36

'MICALCL MUTATION STATUS' versus 'CN_CNMF'

P value = 0.257 (Fisher's exact test), Q value = 1

Table S2953. Gene #370: 'MICALCL MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
MICALCL MUTATED	0	2	2
MICALCL WILD-TYPE	24	43	19

'MICALCL MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.827 (Fisher's exact test), Q value = 1

Table S2954. Gene #370: 'MICALCL MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
MICALCL MUTATED	2	1	1
MICALCL WILD-TYPE	29	34	23

'MICALCL MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.808 (Fisher's exact test), Q value = 1

Table S2955. Gene #370: 'MICALCL MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
MICALCL MUTATED	3	1	0
MICALCL WILD-TYPE	37	24	19

'MICALCL MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0639 (Fisher's exact test), Q value = 1

Table S2956. Gene #370: 'MICALCL MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
MICALCL MUTATED	1	1	2
MICALCL WILD-TYPE	0	30	50

'MICALCL MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2957. Gene #370: 'MICALCL MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
MICALCL MUTATED	2	1	0	1
MICALCL WILD-TYPE	29	19	11	21

'MICALCL MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.829 (Fisher's exact test), Q value = 1

Table S2958. Gene #370: 'MICALCL MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
MICALCL MUTATED	2	0	2
MICALCL WILD-TYPE	35	16	29

'MICALCL MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2959. Gene #370: 'MICALCL MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
MICALCL MUTATED	2	1	1
MICALCL WILD-TYPE	36	19	25

'MICALCL MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.682 (Fisher's exact test), Q value = 1

Table S2960. Gene #370: 'MICALCL MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
MICALCL MUTATED	2	0	2
MICALCL WILD-TYPE	25	19	36

'PPP1R12B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.555 (Fisher's exact test), Q value = 1

Table S2961. Gene #371: 'PPP1R12B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
PPP1R12B MUTATED	2	2	0
PPP1R12B WILD-TYPE	22	43	21

'PPP1R12B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.827 (Fisher's exact test), Q value = 1

Table S2962. Gene #371: 'PPP1R12B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
PPP1R12B MUTATED	2	1	1
PPP1R12B WILD-TYPE	29	34	23

'PPP1R12B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.255 (Fisher's exact test), Q value = 1

Table S2963. Gene #371: 'PPP1R12B MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
PPP1R12B MUTATED	2	0	2
PPP1R12B WILD-TYPE	38	25	17

'PPP1R12B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.645 (Fisher's exact test), Q value = 1

Table S2964. Gene #371: 'PPP1R12B MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
PPP1R12B MUTATED	0	2	2
PPP1R12B WILD-TYPE	1	29	50

'PPP1R12B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.616 (Fisher's exact test), Q value = 1

Table S2965. Gene #371: 'PPP1R12B MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
PPP1R12B MUTATED	2	0	0	2
PPP1R12B WILD-TYPE	29	20	11	20

'PPP1R12B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.179 (Fisher's exact test), Q value = 1

Table S2966. Gene #371: 'PPP1R12B MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
PPP1R12B MUTATED	2	2	0
PPP1R12B WILD-TYPE	35	14	31

'PPP1R12B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.683 (Fisher's exact test), Q value = 1

Table S2967. Gene #371: 'PPP1R12B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
PPP1R12B MUTATED	2	0	2
PPP1R12B WILD-TYPE	36	20	24

'PPP1R12B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.262 (Fisher's exact test), Q value = 1

Table S2968. Gene #371: 'PPP1R12B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
PPP1R12B MUTATED	0	2	2
PPP1R12B WILD-TYPE	27	17	36

'ENG MUTATION STATUS' versus 'CN_CNMF'

P value = 0.428 (Fisher's exact test), Q value = 1

Table S2969. Gene #372: 'ENG MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
ENG MUTATED	0	3	0
ENG WILD-TYPE	24	42	21

'ENG MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.111 (Fisher's exact test), Q value = 1

Table S2970. Gene #372: 'ENG MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
ENG MUTATED	0	3	0
ENG WILD-TYPE	31	32	24

'ENG MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0792 (Fisher's exact test), Q value = 1

Table S2971. Gene #372: 'ENG MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
ENG MUTATED	0	1	2
ENG WILD-TYPE	40	24	17

'ENG MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0829 (Fisher's exact test), Q value = 1

Table S2972. Gene #372: 'ENG MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
ENG MUTATED	0	3	0
ENG WILD-TYPE	1	28	52

'ENG MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0133 (Fisher's exact test), Q value = 1

Table S2973. Gene #372: 'ENG MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
ENG MUTATED	0	1	2	0
ENG WILD-TYPE	31	19	9	22

Figure S231. Get High-res Image Gene #372: 'ENG MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

'ENG MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0449 (Fisher's exact test), Q value = 1

Table S2974. Gene #372: 'ENG MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
ENG MUTATED	0	2	1
ENG WILD-TYPE	37	14	30

Figure S232. Get High-res Image Gene #372: 'ENG MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'ENG MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.159 (Fisher's exact test), Q value = 1

Table S2975. Gene #372: 'ENG MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
ENG MUTATED	0	1	2
ENG WILD-TYPE	38	19	24

'ENG MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0893 (Fisher's exact test), Q value = 1

Table S2976. Gene #372: 'ENG MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
ENG MUTATED	1	2	0
ENG WILD-TYPE	26	17	38

'ZHX3 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2977. Gene #373: 'ZHX3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
ZHX3 MUTATED	2	3	1
ZHX3 WILD-TYPE	22	42	20

'ZHX3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.275 (Fisher's exact test), Q value = 1

Table S2978. Gene #373: 'ZHX3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
ZHX3 MUTATED	4	1	1
ZHX3 WILD-TYPE	27	34	23

'ZHX3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.848 (Fisher's exact test), Q value = 1

Table S2979. Gene #373: 'ZHX3 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
ZHX3 MUTATED	2	2	1
ZHX3 WILD-TYPE	38	23	18

'ZHX3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.065 (Fisher's exact test), Q value = 1

Table S2980. Gene #373: 'ZHX3 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
ZHX3 MUTATED	1	1	3
ZHX3 WILD-TYPE	0	30	49

'ZHX3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.36 (Fisher's exact test), Q value = 1

Table S2981. Gene #373: 'ZHX3 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
ZHX3 MUTATED	1	3	0	1
ZHX3 WILD-TYPE	30	17	11	21

'ZHX3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.201 (Fisher's exact test), Q value = 1

Table S2982. Gene #373: 'ZHX3 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
ZHX3 MUTATED	1	0	4
ZHX3 WILD-TYPE	36	16	27

'ZHX3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.509 (Fisher's exact test), Q value = 1

Table S2983. Gene #373: 'ZHX3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
ZHX3 MUTATED	1	2	2
ZHX3 WILD-TYPE	37	18	24

'ZHX3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.365 (Fisher's exact test), Q value = 1

Table S2984. Gene #373: 'ZHX3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
ZHX3 MUTATED	3	0	2
ZHX3 WILD-TYPE	24	19	36

'SLCO2A1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.593 (Fisher's exact test), Q value = 1

Table S2985. Gene #374: 'SLCO2A1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
SLCO2A1 MUTATED	2	3	0
SLCO2A1 WILD-TYPE	22	42	21

'SLCO2A1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2986. Gene #374: 'SLCO2A1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
SLCO2A1 MUTATED	2	2	1
SLCO2A1 WILD-TYPE	29	33	23

'SLCO2A1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.596 (Fisher's exact test), Q value = 1

Table S2987. Gene #374: 'SLCO2A1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
SLCO2A1 MUTATED	3	2	0
SLCO2A1 WILD-TYPE	37	23	19

'SLCO2A1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0428 (Fisher's exact test), Q value = 1

Table S2988. Gene #374: 'SLCO2A1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
SLCO2A1 MUTATED	1	2	2
SLCO2A1 WILD-TYPE	0	29	50

Figure S233. Get High-res Image Gene #374: 'SLCO2A1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'SLCO2A1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.226 (Fisher's exact test), Q value = 1

Table S2989. Gene #374: 'SLCO2A1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
SLCO2A1 MUTATED	2	3	0	0
SLCO2A1 WILD-TYPE	29	17	11	22

'SLCO2A1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.598 (Fisher's exact test), Q value = 1

Table S2990. Gene #374: 'SLCO2A1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
SLCO2A1 MUTATED	2	0	3
SLCO2A1 WILD-TYPE	35	16	28

'SLCO2A1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.71 (Fisher's exact test), Q value = 1

Table S2991. Gene #374: 'SLCO2A1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
SLCO2A1 MUTATED	2	2	1
SLCO2A1 WILD-TYPE	36	18	25

'SLCO2A1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.365 (Fisher's exact test), Q value = 1

Table S2992. Gene #374: 'SLCO2A1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
SLCO2A1 MUTATED	3	0	2
SLCO2A1 WILD-TYPE	24	19	36

'PHRF1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.26 (Fisher's exact test), Q value = 1

Table S2993. Gene #375: 'PHRF1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
PHRF1 MUTATED	0	5	2
PHRF1 WILD-TYPE	24	40	19

'PHRF1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.103 (Fisher's exact test), Q value = 1

Table S2994. Gene #375: 'PHRF1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
PHRF1 MUTATED	0	4	3
PHRF1 WILD-TYPE	31	31	21

'PHRF1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.773 (Fisher's exact test), Q value = 1

Table S2995. Gene #375: 'PHRF1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
PHRF1 MUTATED	3	3	1
PHRF1 WILD-TYPE	37	22	18

'PHRF1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0249 (Fisher's exact test), Q value = 1

Table S2996. Gene #375: 'PHRF1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
PHRF1 MUTATED	1	4	2
PHRF1 WILD-TYPE	0	27	50

Figure S234. Get High-res Image Gene #375: 'PHRF1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'PHRF1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0391 (Fisher's exact test), Q value = 1

Table S2997. Gene #375: 'PHRF1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
PHRF1 MUTATED	1	5	0	1
PHRF1 WILD-TYPE	30	15	11	21

Figure S235. Get High-res Image Gene #375: 'PHRF1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

'PHRF1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.154 (Fisher's exact test), Q value = 1

Table S2998. Gene #375: 'PHRF1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
PHRF1 MUTATED	2	0	5
PHRF1 WILD-TYPE	35	16	26

'PHRF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00718 (Fisher's exact test), Q value = 1

Table S2999. Gene #375: 'PHRF1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
PHRF1 MUTATED	2	5	0
PHRF1 WILD-TYPE	36	15	26

Figure S236. Get High-res Image Gene #375: 'PHRF1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

'PHRF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0645 (Fisher's exact test), Q value = 1

Table S3000. Gene #375: 'PHRF1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
PHRF1 MUTATED	5	0	2
PHRF1 WILD-TYPE	22	19	36

'PUS7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.605 (Fisher's exact test), Q value = 1

Table S3001. Gene #376: 'PUS7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
PUS7 MUTATED	0	2	1
PUS7 WILD-TYPE	24	43	20

'PUS7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.448 (Fisher's exact test), Q value = 1

Table S3002. Gene #376: 'PUS7 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
PUS7 MUTATED	1	3	0
PUS7 WILD-TYPE	30	32	24

'PUS7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.343 (Fisher's exact test), Q value = 1

Table S3003. Gene #376: 'PUS7 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
PUS7 MUTATED	1	1	2
PUS7 WILD-TYPE	39	24	17

'PUS7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.185 (Fisher's exact test), Q value = 1

Table S3004. Gene #376: 'PUS7 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
PUS7 MUTATED	0	3	1
PUS7 WILD-TYPE	1	28	51

'PUS7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.29 (Fisher's exact test), Q value = 1

Table S3005. Gene #376: 'PUS7 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
PUS7 MUTATED	0	1	1	2
PUS7 WILD-TYPE	31	19	10	20

'PUS7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.315 (Fisher's exact test), Q value = 1

Table S3006. Gene #376: 'PUS7 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
PUS7 MUTATED	1	2	1
PUS7 WILD-TYPE	36	14	30

'PUS7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.811 (Fisher's exact test), Q value = 1

Table S3007. Gene #376: 'PUS7 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
PUS7 MUTATED	1	1	2
PUS7 WILD-TYPE	37	19	24

'PUS7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S3008. Gene #376: 'PUS7 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
PUS7 MUTATED	1	1	2
PUS7 WILD-TYPE	26	18	36

'FLAD1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.504 (Fisher's exact test), Q value = 1

Table S3009. Gene #377: 'FLAD1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
FLAD1 MUTATED	1	4	0
FLAD1 WILD-TYPE	23	41	21

'FLAD1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.733 (Fisher's exact test), Q value = 1

Table S3010. Gene #377: 'FLAD1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
FLAD1 MUTATED	1	3	1
FLAD1 WILD-TYPE	30	32	23

'FLAD1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.704 (Fisher's exact test), Q value = 1

Table S3011. Gene #377: 'FLAD1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
FLAD1 MUTATED	2	1	2
FLAD1 WILD-TYPE	38	24	17

'FLAD1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0141 (Fisher's exact test), Q value = 1

Table S3012. Gene #377: 'FLAD1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
FLAD1 MUTATED	1	3	1
FLAD1 WILD-TYPE	0	28	51

Figure S237. Get High-res Image Gene #377: 'FLAD1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'FLAD1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.147 (Fisher's exact test), Q value = 1

Table S3013. Gene #377: 'FLAD1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
FLAD1 MUTATED	1	3	1	0
FLAD1 WILD-TYPE	30	17	10	22

'FLAD1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.501 (Fisher's exact test), Q value = 1

Table S3014. Gene #377: 'FLAD1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
FLAD1 MUTATED	1	1	3
FLAD1 WILD-TYPE	36	15	28

'FLAD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.147 (Fisher's exact test), Q value = 1

Table S3015. Gene #377: 'FLAD1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
FLAD1 MUTATED	1	3	1
FLAD1 WILD-TYPE	37	17	25

'FLAD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.433 (Fisher's exact test), Q value = 1

Table S3016. Gene #377: 'FLAD1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
FLAD1 MUTATED	3	1	1
FLAD1 WILD-TYPE	24	18	37

'PDE12 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.483 (Fisher's exact test), Q value = 1

Table S3017. Gene #378: 'PDE12 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
PDE12 MUTATED	0	2	1
PDE12 WILD-TYPE	31	33	23

'PDE12 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.795 (Fisher's exact test), Q value = 1

Table S3018. Gene #378: 'PDE12 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
PDE12 MUTATED	1	1	1
PDE12 WILD-TYPE	39	24	18

'PDE12 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.569 (Fisher's exact test), Q value = 1

Table S3019. Gene #378: 'PDE12 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
PDE12 MUTATED	0	2	1
PDE12 WILD-TYPE	1	29	51

'PDE12 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.164 (Fisher's exact test), Q value = 1

Table S3020. Gene #378: 'PDE12 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
PDE12 MUTATED	0	2	0	1
PDE12 WILD-TYPE	31	18	11	21

'PDE12 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.591 (Fisher's exact test), Q value = 1

Table S3021. Gene #378: 'PDE12 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
PDE12 MUTATED	1	0	2
PDE12 WILD-TYPE	36	16	29

'PDE12 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.235 (Fisher's exact test), Q value = 1

Table S3022. Gene #378: 'PDE12 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
PDE12 MUTATED	1	2	0
PDE12 WILD-TYPE	37	18	26

'PDE12 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.456 (Fisher's exact test), Q value = 1

Table S3023. Gene #378: 'PDE12 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
PDE12 MUTATED	2	0	1
PDE12 WILD-TYPE	25	19	37

'PNMA3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.805 (Fisher's exact test), Q value = 1

Table S3024. Gene #379: 'PNMA3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
PNMA3 MUTATED	1	3	0
PNMA3 WILD-TYPE	23	42	21

'PNMA3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.448 (Fisher's exact test), Q value = 1

Table S3025. Gene #379: 'PNMA3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
PNMA3 MUTATED	1	3	0
PNMA3 WILD-TYPE	30	32	24

'PNMA3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.343 (Fisher's exact test), Q value = 1

Table S3026. Gene #379: 'PNMA3 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
PNMA3 MUTATED	1	1	2
PNMA3 WILD-TYPE	39	24	17

'PNMA3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.185 (Fisher's exact test), Q value = 1

Table S3027. Gene #379: 'PNMA3 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
PNMA3 MUTATED	0	3	1
PNMA3 WILD-TYPE	1	28	51

'PNMA3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.364 (Fisher's exact test), Q value = 1

Table S3028. Gene #379: 'PNMA3 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
PNMA3 MUTATED	1	0	1	2
PNMA3 WILD-TYPE	30	20	10	20

'PNMA3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.315 (Fisher's exact test), Q value = 1

Table S3029. Gene #379: 'PNMA3 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
PNMA3 MUTATED	1	2	1
PNMA3 WILD-TYPE	36	14	30

'PNMA3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.196 (Fisher's exact test), Q value = 1

Table S3030. Gene #379: 'PNMA3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
PNMA3 MUTATED	1	0	3
PNMA3 WILD-TYPE	37	20	23

'PNMA3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.436 (Fisher's exact test), Q value = 1

Table S3031. Gene #379: 'PNMA3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
PNMA3 MUTATED	1	2	1
PNMA3 WILD-TYPE	26	17	37

'CEP72 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.504 (Fisher's exact test), Q value = 1

Table S3032. Gene #380: 'CEP72 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
CEP72 MUTATED	1	4	0
CEP72 WILD-TYPE	23	41	21

'CEP72 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S3033. Gene #380: 'CEP72 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
CEP72 MUTATED	2	2	1
CEP72 WILD-TYPE	29	33	23

'CEP72 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.245 (Fisher's exact test), Q value = 1

Table S3034. Gene #380: 'CEP72 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
CEP72 MUTATED	4	0	1
CEP72 WILD-TYPE	36	25	18

'CEP72 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.065 (Fisher's exact test), Q value = 1

Table S3035. Gene #380: 'CEP72 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
CEP72 MUTATED	1	1	3
CEP72 WILD-TYPE	0	30	49

'CEP72 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.73 (Fisher's exact test), Q value = 1

Table S3036. Gene #380: 'CEP72 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
CEP72 MUTATED	1	1	1	2
CEP72 WILD-TYPE	30	19	10	20

'CEP72 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.715 (Fisher's exact test), Q value = 1

Table S3037. Gene #380: 'CEP72 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
CEP72 MUTATED	3	0	2
CEP72 WILD-TYPE	34	16	29

'CEP72 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.852 (Fisher's exact test), Q value = 1

Table S3038. Gene #380: 'CEP72 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
CEP72 MUTATED	3	1	1
CEP72 WILD-TYPE	35	19	25

'CEP72 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.603 (Fisher's exact test), Q value = 1

Table S3039. Gene #380: 'CEP72 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
CEP72 MUTATED	2	0	3
CEP72 WILD-TYPE	25	19	35

'COL5A1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.618 (Fisher's exact test), Q value = 1

Table S3040. Gene #381: 'COL5A1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
COL5A1 MUTATED	4	4	2
COL5A1 WILD-TYPE	20	41	19

'COL5A1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.694 (Fisher's exact test), Q value = 1

Table S3041. Gene #381: 'COL5A1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
COL5A1 MUTATED	3	3	4
COL5A1 WILD-TYPE	28	32	20

'COL5A1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.08 (Fisher's exact test), Q value = 1

Table S3042. Gene #381: 'COL5A1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
COL5A1 MUTATED	7	0	2
COL5A1 WILD-TYPE	33	25	17

'COL5A1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.096 (Fisher's exact test), Q value = 1

Table S3043. Gene #381: 'COL5A1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
COL5A1 MUTATED	1	2	6
COL5A1 WILD-TYPE	0	29	46

'COL5A1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.753 (Fisher's exact test), Q value = 1

Table S3044. Gene #381: 'COL5A1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
COL5A1 MUTATED	5	1	1	2
COL5A1 WILD-TYPE	26	19	10	20

'COL5A1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.213 (Fisher's exact test), Q value = 1

Table S3045. Gene #381: 'COL5A1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
COL5A1 MUTATED	6	2	1
COL5A1 WILD-TYPE	31	14	30

'COL5A1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.742 (Fisher's exact test), Q value = 1

Table S3046. Gene #381: 'COL5A1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
COL5A1 MUTATED	5	1	3
COL5A1 WILD-TYPE	33	19	23

'COL5A1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.352 (Fisher's exact test), Q value = 1

Table S3047. Gene #381: 'COL5A1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
COL5A1 MUTATED	1	2	6
COL5A1 WILD-TYPE	26	17	32

'HIST1H1A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.176 (Fisher's exact test), Q value = 1

Table S3048. Gene #382: 'HIST1H1A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
HIST1H1A MUTATED	0	4	0
HIST1H1A WILD-TYPE	24	41	21

'HIST1H1A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.243 (Fisher's exact test), Q value = 1

Table S3049. Gene #382: 'HIST1H1A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
HIST1H1A MUTATED	0	3	1
HIST1H1A WILD-TYPE	31	32	23

'HIST1H1A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.559 (Fisher's exact test), Q value = 1

Table S3050. Gene #382: 'HIST1H1A MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
HIST1H1A MUTATED	1	2	1
HIST1H1A WILD-TYPE	39	23	18

'HIST1H1A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00233 (Fisher's exact test), Q value = 1

Table S3051. Gene #382: 'HIST1H1A MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
HIST1H1A MUTATED	1	3	0
HIST1H1A WILD-TYPE	0	28	52

Figure S238. Get High-res Image Gene #382: 'HIST1H1A MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'HIST1H1A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.213 (Fisher's exact test), Q value = 1

Table S3052. Gene #382: 'HIST1H1A MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
HIST1H1A MUTATED	0	2	1	1
HIST1H1A WILD-TYPE	31	18	10	21

'HIST1H1A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.137 (Fisher's exact test), Q value = 1

Table S3053. Gene #382: 'HIST1H1A MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
HIST1H1A MUTATED	0	1	3
HIST1H1A WILD-TYPE	37	15	28

'HIST1H1A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.075 (Fisher's exact test), Q value = 1

Table S3054. Gene #382: 'HIST1H1A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
HIST1H1A MUTATED	0	1	3
HIST1H1A WILD-TYPE	38	19	23

'HIST1H1A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0726 (Fisher's exact test), Q value = 1

Table S3055. Gene #382: 'HIST1H1A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
HIST1H1A MUTATED	3	1	0
HIST1H1A WILD-TYPE	24	18	38

'WHSC1L1 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S3056. Gene #383: 'WHSC1L1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
WHSC1L1 MUTATED	1	3	1
WHSC1L1 WILD-TYPE	23	42	20

'WHSC1L1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S3057. Gene #383: 'WHSC1L1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
WHSC1L1 MUTATED	2	2	1
WHSC1L1 WILD-TYPE	29	33	23

'WHSC1L1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.359 (Fisher's exact test), Q value = 1

Table S3058. Gene #383: 'WHSC1L1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
WHSC1L1 MUTATED	2	3	0
WHSC1L1 WILD-TYPE	38	22	19

'WHSC1L1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S3059. Gene #383: 'WHSC1L1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
WHSC1L1 MUTATED	0	2	3
WHSC1L1 WILD-TYPE	1	29	49

'WHSC1L1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.633 (Fisher's exact test), Q value = 1

Table S3060. Gene #383: 'WHSC1L1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
WHSC1L1 MUTATED	1	2	0	2
WHSC1L1 WILD-TYPE	30	18	11	20

'WHSC1L1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.598 (Fisher's exact test), Q value = 1

Table S3061. Gene #383: 'WHSC1L1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
WHSC1L1 MUTATED	2	0	3
WHSC1L1 WILD-TYPE	35	16	28

'WHSC1L1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.71 (Fisher's exact test), Q value = 1

Table S3062. Gene #383: 'WHSC1L1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
WHSC1L1 MUTATED	2	2	1
WHSC1L1 WILD-TYPE	36	18	25

'WHSC1L1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.365 (Fisher's exact test), Q value = 1

Table S3063. Gene #383: 'WHSC1L1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
WHSC1L1 MUTATED	3	0	2
WHSC1L1 WILD-TYPE	24	19	36

'MTFMT MUTATION STATUS' versus 'CN_CNMF'

P value = 0.428 (Fisher's exact test), Q value = 1

Table S3064. Gene #384: 'MTFMT MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
MTFMT MUTATED	0	3	0
MTFMT WILD-TYPE	24	42	21

'MTFMT MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.184 (Fisher's exact test), Q value = 1

Table S3065. Gene #384: 'MTFMT MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
MTFMT MUTATED	1	0	2
MTFMT WILD-TYPE	30	35	22

'MTFMT MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.44 (Fisher's exact test), Q value = 1

Table S3066. Gene #384: 'MTFMT MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
MTFMT MUTATED	1	2	0
MTFMT WILD-TYPE	39	23	19

'MTFMT MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.315 (Fisher's exact test), Q value = 1

Table S3067. Gene #384: 'MTFMT MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
MTFMT MUTATED	0	0	3
MTFMT WILD-TYPE	1	31	49

'MTFMT MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S3068. Gene #384: 'MTFMT MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
MTFMT MUTATED	1	1	0	1
MTFMT WILD-TYPE	30	19	11	21

'MTFMT MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.139 (Fisher's exact test), Q value = 1

Table S3069. Gene #384: 'MTFMT MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
MTFMT MUTATED	0	0	3
MTFMT WILD-TYPE	37	16	28

'MTFMT MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.235 (Fisher's exact test), Q value = 1

Table S3070. Gene #384: 'MTFMT MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
MTFMT MUTATED	1	2	0
MTFMT WILD-TYPE	37	18	26

'MTFMT MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.456 (Fisher's exact test), Q value = 1

Table S3071. Gene #384: 'MTFMT MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
MTFMT MUTATED	2	0	1
MTFMT WILD-TYPE	25	19	37

'KIAA2018 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.591 (Fisher's exact test), Q value = 1

Table S3072. Gene #385: 'KIAA2018 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
KIAA2018 MUTATED	3	3	1
KIAA2018 WILD-TYPE	21	42	20

'KIAA2018 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.366 (Fisher's exact test), Q value = 1

Table S3073. Gene #385: 'KIAA2018 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
KIAA2018 MUTATED	3	1	3
KIAA2018 WILD-TYPE	28	34	21

'KIAA2018 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.127 (Fisher's exact test), Q value = 1

Table S3074. Gene #385: 'KIAA2018 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
KIAA2018 MUTATED	4	0	3
KIAA2018 WILD-TYPE	36	25	16

'KIAA2018 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0924 (Fisher's exact test), Q value = 1

Table S3075. Gene #385: 'KIAA2018 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
KIAA2018 MUTATED	1	2	4
KIAA2018 WILD-TYPE	0	29	48

'KIAA2018 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.565 (Fisher's exact test), Q value = 1

Table S3076. Gene #385: 'KIAA2018 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
KIAA2018 MUTATED	2	1	2	2
KIAA2018 WILD-TYPE	29	19	9	20

'KIAA2018 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.454 (Fisher's exact test), Q value = 1

Table S3077. Gene #385: 'KIAA2018 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
KIAA2018 MUTATED	4	2	1
KIAA2018 WILD-TYPE	33	14	30

'KIAA2018 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.779 (Fisher's exact test), Q value = 1

Table S3078. Gene #385: 'KIAA2018 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
KIAA2018 MUTATED	3	1	3
KIAA2018 WILD-TYPE	35	19	23

'KIAA2018 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.598 (Fisher's exact test), Q value = 1

Table S3079. Gene #385: 'KIAA2018 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
KIAA2018 MUTATED	1	2	4
KIAA2018 WILD-TYPE	26	17	34

'EDN1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.605 (Fisher's exact test), Q value = 1

Table S3080. Gene #386: 'EDN1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
EDN1 MUTATED	0	2	1
EDN1 WILD-TYPE	24	43	20

'EDN1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.266 (Fisher's exact test), Q value = 1

Table S3081. Gene #386: 'EDN1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
EDN1 MUTATED	0	1	2
EDN1 WILD-TYPE	31	34	22

'EDN1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S3082. Gene #386: 'EDN1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
EDN1 MUTATED	2	1	0
EDN1 WILD-TYPE	38	24	19

'EDN1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0188 (Fisher's exact test), Q value = 1

Table S3083. Gene #386: 'EDN1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
EDN1 MUTATED	1	0	2
EDN1 WILD-TYPE	0	31	50

Figure S239. Get High-res Image Gene #386: 'EDN1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'EDN1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S3084. Gene #386: 'EDN1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
EDN1 MUTATED	1	1	0	1
EDN1 WILD-TYPE	30	19	11	21

'EDN1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.591 (Fisher's exact test), Q value = 1

Table S3085. Gene #386: 'EDN1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
EDN1 MUTATED	1	0	2
EDN1 WILD-TYPE	36	16	29

'EDN1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.235 (Fisher's exact test), Q value = 1

Table S3086. Gene #386: 'EDN1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
EDN1 MUTATED	1	2	0
EDN1 WILD-TYPE	37	18	26

'EDN1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.456 (Fisher's exact test), Q value = 1

Table S3087. Gene #386: 'EDN1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
EDN1 MUTATED	2	0	1
EDN1 WILD-TYPE	25	19	37

'LRRC41 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.593 (Fisher's exact test), Q value = 1

Table S3088. Gene #387: 'LRRC41 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
LRRC41 MUTATED	2	3	0
LRRC41 WILD-TYPE	22	42	21

'LRRC41 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.733 (Fisher's exact test), Q value = 1

Table S3089. Gene #387: 'LRRC41 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
LRRC41 MUTATED	1	3	1
LRRC41 WILD-TYPE	30	32	23

'LRRC41 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S3090. Gene #387: 'LRRC41 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
LRRC41 MUTATED	3	1	1
LRRC41 WILD-TYPE	37	24	18

'LRRC41 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S3091. Gene #387: 'LRRC41 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
LRRC41 MUTATED	0	2	3
LRRC41 WILD-TYPE	1	29	49

'LRRC41 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S3092. Gene #387: 'LRRC41 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
LRRC41 MUTATED	2	1	1	1
LRRC41 WILD-TYPE	29	19	10	21

'LRRC41 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.839 (Fisher's exact test), Q value = 1

Table S3093. Gene #387: 'LRRC41 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
LRRC41 MUTATED	3	1	1
LRRC41 WILD-TYPE	34	15	30

'LRRC41 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.597 (Fisher's exact test), Q value = 1

Table S3094. Gene #387: 'LRRC41 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
LRRC41 MUTATED	3	0	2
LRRC41 WILD-TYPE	35	20	24

'LRRC41 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.708 (Fisher's exact test), Q value = 1

Table S3095. Gene #387: 'LRRC41 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
LRRC41 MUTATED	1	2	2
LRRC41 WILD-TYPE	26	17	36

'EIF5B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.3 (Fisher's exact test), Q value = 1

Table S3096. Gene #388: 'EIF5B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
EIF5B MUTATED	3	4	0
EIF5B WILD-TYPE	21	41	21

'EIF5B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.789 (Fisher's exact test), Q value = 1

Table S3097. Gene #388: 'EIF5B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
EIF5B MUTATED	3	3	1
EIF5B WILD-TYPE	28	32	23

'EIF5B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.678 (Fisher's exact test), Q value = 1

Table S3098. Gene #388: 'EIF5B MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
EIF5B MUTATED	4	1	2
EIF5B WILD-TYPE	36	24	17

'EIF5B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0646 (Fisher's exact test), Q value = 1

Table S3099. Gene #388: 'EIF5B MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
EIF5B MUTATED	1	3	3
EIF5B WILD-TYPE	0	28	49

'EIF5B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.315 (Fisher's exact test), Q value = 1

Table S3100. Gene #388: 'EIF5B MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
EIF5B MUTATED	3	3	1	0
EIF5B WILD-TYPE	28	17	10	22

'EIF5B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.399 (Fisher's exact test), Q value = 1

Table S3101. Gene #388: 'EIF5B MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
EIF5B MUTATED	3	0	4
EIF5B WILD-TYPE	34	16	27

'EIF5B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.41 (Fisher's exact test), Q value = 1

Table S3102. Gene #388: 'EIF5B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
EIF5B MUTATED	3	3	1
EIF5B WILD-TYPE	35	17	25

'EIF5B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.226 (Fisher's exact test), Q value = 1

Table S3103. Gene #388: 'EIF5B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
EIF5B MUTATED	4	0	3
EIF5B WILD-TYPE	23	19	35

'AFF3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.152 (Fisher's exact test), Q value = 1

Table S3104. Gene #389: 'AFF3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
AFF3 MUTATED	3	3	5
AFF3 WILD-TYPE	21	42	16

'AFF3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.235 (Fisher's exact test), Q value = 1

Table S3105. Gene #389: 'AFF3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
AFF3 MUTATED	6	2	3
AFF3 WILD-TYPE	25	33	21

'AFF3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.129 (Fisher's exact test), Q value = 1

Table S3106. Gene #389: 'AFF3 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
AFF3 MUTATED	7	4	0
AFF3 WILD-TYPE	33	21	19

'AFF3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0545 (Fisher's exact test), Q value = 1

Table S3107. Gene #389: 'AFF3 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
AFF3 MUTATED	1	2	8
AFF3 WILD-TYPE	0	29	44

'AFF3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.193 (Fisher's exact test), Q value = 1

Table S3108. Gene #389: 'AFF3 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
AFF3 MUTATED	6	4	0	1
AFF3 WILD-TYPE	25	16	11	21

'AFF3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.248 (Fisher's exact test), Q value = 1

Table S3109. Gene #389: 'AFF3 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
AFF3 MUTATED	6	0	5
AFF3 WILD-TYPE	31	16	26

'AFF3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0282 (Fisher's exact test), Q value = 1

Table S3110. Gene #389: 'AFF3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
AFF3 MUTATED	8	3	0
AFF3 WILD-TYPE	30	17	26

Figure S240. Get High-res Image Gene #389: 'AFF3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

'AFF3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.125 (Fisher's exact test), Q value = 1

Table S3111. Gene #389: 'AFF3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
AFF3 MUTATED	4	0	7
AFF3 WILD-TYPE	23	19	31

'MEGF10 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S3112. Gene #390: 'MEGF10 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
MEGF10 MUTATED	2	4	1
MEGF10 WILD-TYPE	22	41	20

'MEGF10 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S3113. Gene #390: 'MEGF10 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
MEGF10 MUTATED	2	3	2
MEGF10 WILD-TYPE	29	32	22

'MEGF10 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.455 (Fisher's exact test), Q value = 1

Table S3114. Gene #390: 'MEGF10 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
MEGF10 MUTATED	3	1	3
MEGF10 WILD-TYPE	37	24	16

'MEGF10 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0646 (Fisher's exact test), Q value = 1

Table S3115. Gene #390: 'MEGF10 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
MEGF10 MUTATED	1	3	3
MEGF10 WILD-TYPE	0	28	49

'MEGF10 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.39 (Fisher's exact test), Q value = 1

Table S3116. Gene #390: 'MEGF10 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
MEGF10 MUTATED	1	2	2	2
MEGF10 WILD-TYPE	30	18	9	20

'MEGF10 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.768 (Fisher's exact test), Q value = 1

Table S3117. Gene #390: 'MEGF10 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
MEGF10 MUTATED	3	2	2
MEGF10 WILD-TYPE	34	14	29

'MEGF10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.355 (Fisher's exact test), Q value = 1

Table S3118. Gene #390: 'MEGF10 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
MEGF10 MUTATED	2	1	4
MEGF10 WILD-TYPE	36	19	22

'MEGF10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S3119. Gene #390: 'MEGF10 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
MEGF10 MUTATED	2	2	3
MEGF10 WILD-TYPE	25	17	35

'KBTBD7 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S3120. Gene #391: 'KBTBD7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
KBTBD7 MUTATED	1	2	0
KBTBD7 WILD-TYPE	23	43	21

'KBTBD7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.266 (Fisher's exact test), Q value = 1

Table S3121. Gene #391: 'KBTBD7 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
KBTBD7 MUTATED	0	1	2
KBTBD7 WILD-TYPE	31	34	22

'KBTBD7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.211 (Fisher's exact test), Q value = 1

Table S3122. Gene #391: 'KBTBD7 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
KBTBD7 MUTATED	1	0	2
KBTBD7 WILD-TYPE	39	25	17

'KBTBD7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.569 (Fisher's exact test), Q value = 1

Table S3123. Gene #391: 'KBTBD7 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
KBTBD7 MUTATED	0	2	1
KBTBD7 WILD-TYPE	1	29	51

'KBTBD7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.573 (Fisher's exact test), Q value = 1

Table S3124. Gene #391: 'KBTBD7 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
KBTBD7 MUTATED	1	0	0	2
KBTBD7 WILD-TYPE	30	20	11	20

'KBTBD7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0915 (Fisher's exact test), Q value = 1

Table S3125. Gene #391: 'KBTBD7 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
KBTBD7 MUTATED	1	2	0
KBTBD7 WILD-TYPE	36	14	31

'KBTBD7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.453 (Fisher's exact test), Q value = 1

Table S3126. Gene #391: 'KBTBD7 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
KBTBD7 MUTATED	1	0	2
KBTBD7 WILD-TYPE	37	20	24

'KBTBD7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.158 (Fisher's exact test), Q value = 1

Table S3127. Gene #391: 'KBTBD7 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
KBTBD7 MUTATED	0	2	1
KBTBD7 WILD-TYPE	27	17	37

'IFT46 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.473 (Fisher's exact test), Q value = 1

Table S3128. Gene #392: 'IFT46 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
IFT46 MUTATED	2	4	0
IFT46 WILD-TYPE	22	41	21

'IFT46 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.421 (Fisher's exact test), Q value = 1

Table S3129. Gene #392: 'IFT46 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
IFT46 MUTATED	1	3	3
IFT46 WILD-TYPE	30	32	21

'IFT46 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.651 (Fisher's exact test), Q value = 1

Table S3130. Gene #392: 'IFT46 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
IFT46 MUTATED	2	2	2
IFT46 WILD-TYPE	38	23	17

'IFT46 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00625 (Fisher's exact test), Q value = 1

Table S3131. Gene #392: 'IFT46 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
IFT46 MUTATED	1	4	1
IFT46 WILD-TYPE	0	27	51

Figure S241. Get High-res Image Gene #392: 'IFT46 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'IFT46 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0747 (Fisher's exact test), Q value = 1

Table S3132. Gene #392: 'IFT46 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
IFT46 MUTATED	1	3	2	0
IFT46 WILD-TYPE	30	17	9	22

'IFT46 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.284 (Fisher's exact test), Q value = 1

Table S3133. Gene #392: 'IFT46 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
IFT46 MUTATED	1	2	3
IFT46 WILD-TYPE	36	14	28

'IFT46 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.261 (Fisher's exact test), Q value = 1

Table S3134. Gene #392: 'IFT46 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
IFT46 MUTATED	1	3	2
IFT46 WILD-TYPE	37	17	24

'IFT46 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.758 (Fisher's exact test), Q value = 1

Table S3135. Gene #392: 'IFT46 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
IFT46 MUTATED	3	1	2
IFT46 WILD-TYPE	24	18	36

'SRGAP3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.306 (Fisher's exact test), Q value = 1

Table S3136. Gene #393: 'SRGAP3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
SRGAP3 MUTATED	1	5	0
SRGAP3 WILD-TYPE	23	40	21

'SRGAP3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.877 (Fisher's exact test), Q value = 1

Table S3137. Gene #393: 'SRGAP3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
SRGAP3 MUTATED	2	3	1
SRGAP3 WILD-TYPE	29	32	23

'SRGAP3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0312 (Fisher's exact test), Q value = 1

Table S3138. Gene #393: 'SRGAP3 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
SRGAP3 MUTATED	2	0	4
SRGAP3 WILD-TYPE	38	25	15

Figure S242. Get High-res Image Gene #393: 'SRGAP3 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

'SRGAP3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0273 (Fisher's exact test), Q value = 1

Table S3139. Gene #393: 'SRGAP3 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
SRGAP3 MUTATED	1	3	2
SRGAP3 WILD-TYPE	0	28	50

Figure S243. Get High-res Image Gene #393: 'SRGAP3 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'SRGAP3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.688 (Fisher's exact test), Q value = 1

Table S3140. Gene #393: 'SRGAP3 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
SRGAP3 MUTATED	1	2	1	2
SRGAP3 WILD-TYPE	30	18	10	20

'SRGAP3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.74 (Fisher's exact test), Q value = 1

Table S3141. Gene #393: 'SRGAP3 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
SRGAP3 MUTATED	2	2	2
SRGAP3 WILD-TYPE	35	14	29

'SRGAP3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.307 (Fisher's exact test), Q value = 1

Table S3142. Gene #393: 'SRGAP3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
SRGAP3 MUTATED	1	2	3
SRGAP3 WILD-TYPE	37	18	23

'SRGAP3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.862 (Fisher's exact test), Q value = 1

Table S3143. Gene #393: 'SRGAP3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
SRGAP3 MUTATED	2	2	2
SRGAP3 WILD-TYPE	25	17	36

'TEX15 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.3 (Fisher's exact test), Q value = 1

Table S3144. Gene #394: 'TEX15 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
TEX15 MUTATED	1	7	1
TEX15 WILD-TYPE	23	38	20

'TEX15 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.213 (Fisher's exact test), Q value = 1

Table S3145. Gene #394: 'TEX15 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
TEX15 MUTATED	1	6	2
TEX15 WILD-TYPE	30	29	22

'TEX15 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.66 (Fisher's exact test), Q value = 1

Table S3146. Gene #394: 'TEX15 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
TEX15 MUTATED	3	3	3
TEX15 WILD-TYPE	37	22	16

'TEX15 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00626 (Fisher's exact test), Q value = 1

Table S3147. Gene #394: 'TEX15 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
TEX15 MUTATED	1	6	2
TEX15 WILD-TYPE	0	25	50

Figure S244. Get High-res Image Gene #394: 'TEX15 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'TEX15 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.12 (Fisher's exact test), Q value = 1

Table S3148. Gene #394: 'TEX15 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
TEX15 MUTATED	1	3	3	2
TEX15 WILD-TYPE	30	17	8	20

'TEX15 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.304 (Fisher's exact test), Q value = 1

Table S3149. Gene #394: 'TEX15 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
TEX15 MUTATED	2	3	4
TEX15 WILD-TYPE	35	13	27

'TEX15 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0545 (Fisher's exact test), Q value = 1

Table S3150. Gene #394: 'TEX15 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
TEX15 MUTATED	1	4	4
TEX15 WILD-TYPE	37	16	22

'TEX15 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.318 (Fisher's exact test), Q value = 1

Table S3151. Gene #394: 'TEX15 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
TEX15 MUTATED	4	3	2
TEX15 WILD-TYPE	23	16	36

'OR7C2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.798 (Fisher's exact test), Q value = 1

Table S3152. Gene #395: 'OR7C2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
OR7C2 MUTATED	1	1	1
OR7C2 WILD-TYPE	23	44	20

'OR7C2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S3153. Gene #395: 'OR7C2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
OR7C2 MUTATED	1	1	1
OR7C2 WILD-TYPE	30	34	23

'OR7C2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S3154. Gene #395: 'OR7C2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
OR7C2 MUTATED	2	1	0
OR7C2 WILD-TYPE	38	24	19

'OR7C2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S3155. Gene #395: 'OR7C2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
OR7C2 MUTATED	0	1	2
OR7C2 WILD-TYPE	1	30	50

'OR7C2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.749 (Fisher's exact test), Q value = 1

Table S3156. Gene #395: 'OR7C2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
OR7C2 MUTATED	2	1	0	0
OR7C2 WILD-TYPE	29	19	11	22

'OR7C2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S3157. Gene #395: 'OR7C2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
OR7C2 MUTATED	2	0	1
OR7C2 WILD-TYPE	35	16	30

'OR7C2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.601 (Fisher's exact test), Q value = 1

Table S3158. Gene #395: 'OR7C2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
OR7C2 MUTATED	2	1	0
OR7C2 WILD-TYPE	36	19	26

'OR7C2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.795 (Fisher's exact test), Q value = 1

Table S3159. Gene #395: 'OR7C2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
OR7C2 MUTATED	1	0	2
OR7C2 WILD-TYPE	26	19	36

'LMTK2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.259 (Fisher's exact test), Q value = 1

Table S3160. Gene #396: 'LMTK2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
LMTK2 MUTATED	3	3	0
LMTK2 WILD-TYPE	21	42	21

'LMTK2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S3161. Gene #396: 'LMTK2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
LMTK2 MUTATED	2	2	2
LMTK2 WILD-TYPE	29	33	22

'LMTK2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.219 (Fisher's exact test), Q value = 1

Table S3162. Gene #396: 'LMTK2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
LMTK2 MUTATED	4	0	2
LMTK2 WILD-TYPE	36	25	17

'LMTK2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.095 (Fisher's exact test), Q value = 1

Table S3163. Gene #396: 'LMTK2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
LMTK2 MUTATED	1	2	3
LMTK2 WILD-TYPE	0	29	49

'LMTK2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.189 (Fisher's exact test), Q value = 1

Table S3164. Gene #396: 'LMTK2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
LMTK2 MUTATED	3	1	2	0
LMTK2 WILD-TYPE	28	19	9	22

'LMTK2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.406 (Fisher's exact test), Q value = 1

Table S3165. Gene #396: 'LMTK2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
LMTK2 MUTATED	3	2	1
LMTK2 WILD-TYPE	34	14	30

'LMTK2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S3166. Gene #396: 'LMTK2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
LMTK2 MUTATED	3	1	2
LMTK2 WILD-TYPE	35	19	24

'LMTK2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.662 (Fisher's exact test), Q value = 1

Table S3167. Gene #396: 'LMTK2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
LMTK2 MUTATED	1	2	3
LMTK2 WILD-TYPE	26	17	35

'MED23 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.423 (Fisher's exact test), Q value = 1

Table S3168. Gene #397: 'MED23 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
MED23 MUTATED	0	4	1
MED23 WILD-TYPE	24	41	20

'MED23 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.254 (Fisher's exact test), Q value = 1

Table S3169. Gene #397: 'MED23 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
MED23 MUTATED	0	3	2
MED23 WILD-TYPE	31	32	22

'MED23 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.848 (Fisher's exact test), Q value = 1

Table S3170. Gene #397: 'MED23 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
MED23 MUTATED	2	2	1
MED23 WILD-TYPE	38	23	18

'MED23 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0141 (Fisher's exact test), Q value = 1

Table S3171. Gene #397: 'MED23 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
MED23 MUTATED	1	3	1
MED23 WILD-TYPE	0	28	51

Figure S245. Get High-res Image Gene #397: 'MED23 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'MED23 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.147 (Fisher's exact test), Q value = 1

Table S3172. Gene #397: 'MED23 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
MED23 MUTATED	1	3	1	0
MED23 WILD-TYPE	30	17	10	22

'MED23 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.501 (Fisher's exact test), Q value = 1

Table S3173. Gene #397: 'MED23 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
MED23 MUTATED	1	1	3
MED23 WILD-TYPE	36	15	28

'MED23 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.509 (Fisher's exact test), Q value = 1

Table S3174. Gene #397: 'MED23 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
MED23 MUTATED	1	2	2
MED23 WILD-TYPE	37	18	24

'MED23 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.433 (Fisher's exact test), Q value = 1

Table S3175. Gene #397: 'MED23 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
MED23 MUTATED	3	1	1
MED23 WILD-TYPE	24	18	37

'ITPR2 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S3176. Gene #398: 'ITPR2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
ITPR2 MUTATED	2	4	2
ITPR2 WILD-TYPE	22	41	19

'ITPR2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.233 (Fisher's exact test), Q value = 1

Table S3177. Gene #398: 'ITPR2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
ITPR2 MUTATED	1	3	4
ITPR2 WILD-TYPE	30	32	20

'ITPR2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.106 (Fisher's exact test), Q value = 1

Table S3178. Gene #398: 'ITPR2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
ITPR2 MUTATED	5	0	3
ITPR2 WILD-TYPE	35	25	16

'ITPR2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.138 (Fisher's exact test), Q value = 1

Table S3179. Gene #398: 'ITPR2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
ITPR2 MUTATED	1	3	4
ITPR2 WILD-TYPE	0	28	48

'ITPR2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.663 (Fisher's exact test), Q value = 1

Table S3180. Gene #398: 'ITPR2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
ITPR2 MUTATED	3	1	2	2
ITPR2 WILD-TYPE	28	19	9	20

'ITPR2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.176 (Fisher's exact test), Q value = 1

Table S3181. Gene #398: 'ITPR2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
ITPR2 MUTATED	4	3	1
ITPR2 WILD-TYPE	33	13	30

'ITPR2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.565 (Fisher's exact test), Q value = 1

Table S3182. Gene #398: 'ITPR2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
ITPR2 MUTATED	3	1	4
ITPR2 WILD-TYPE	35	19	22

'ITPR2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.353 (Fisher's exact test), Q value = 1

Table S3183. Gene #398: 'ITPR2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
ITPR2 MUTATED	1	3	4
ITPR2 WILD-TYPE	26	16	34

'CCNK MUTATION STATUS' versus 'CN_CNMF'

P value = 0.805 (Fisher's exact test), Q value = 1

Table S3184. Gene #399: 'CCNK MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
CCNK MUTATED	1	3	0
CCNK WILD-TYPE	23	42	21

'CCNK MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S3185. Gene #399: 'CCNK MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
CCNK MUTATED	1	2	1
CCNK WILD-TYPE	30	33	23

'CCNK MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0412 (Fisher's exact test), Q value = 1

Table S3186. Gene #399: 'CCNK MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
CCNK MUTATED	1	0	3
CCNK WILD-TYPE	39	25	16

Figure S246. Get High-res Image Gene #399: 'CCNK MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

'CCNK MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0263 (Fisher's exact test), Q value = 1

Table S3187. Gene #399: 'CCNK MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
CCNK MUTATED	1	2	1
CCNK WILD-TYPE	0	29	51

Figure S247. Get High-res Image Gene #399: 'CCNK MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'CCNK MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.213 (Fisher's exact test), Q value = 1

Table S3188. Gene #399: 'CCNK MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
CCNK MUTATED	0	2	1	1
CCNK WILD-TYPE	31	18	10	21

'CCNK MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.668 (Fisher's exact test), Q value = 1

Table S3189. Gene #399: 'CCNK MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
CCNK MUTATED	1	1	2
CCNK WILD-TYPE	36	15	29

'CCNK MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.107 (Fisher's exact test), Q value = 1

Table S3190. Gene #399: 'CCNK MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
CCNK MUTATED	0	2	2
CCNK WILD-TYPE	38	18	24

'CCNK MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.813 (Fisher's exact test), Q value = 1

Table S3191. Gene #399: 'CCNK MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
CCNK MUTATED	2	1	1
CCNK WILD-TYPE	25	18	37

'SLC39A4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.224 (Fisher's exact test), Q value = 1

Table S3192. Gene #400: 'SLC39A4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
SLC39A4 MUTATED	3	2	0
SLC39A4 WILD-TYPE	21	43	21

'SLC39A4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.622 (Fisher's exact test), Q value = 1

Table S3193. Gene #400: 'SLC39A4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
SLC39A4 MUTATED	2	1	2
SLC39A4 WILD-TYPE	29	34	22

'SLC39A4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.5 (Fisher's exact test), Q value = 1

Table S3194. Gene #400: 'SLC39A4 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
SLC39A4 MUTATED	4	1	0
SLC39A4 WILD-TYPE	36	24	19

'SLC39A4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.065 (Fisher's exact test), Q value = 1

Table S3195. Gene #400: 'SLC39A4 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
SLC39A4 MUTATED	1	1	3
SLC39A4 WILD-TYPE	0	30	49

'SLC39A4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.388 (Fisher's exact test), Q value = 1

Table S3196. Gene #400: 'SLC39A4 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
SLC39A4 MUTATED	3	2	0	0
SLC39A4 WILD-TYPE	28	18	11	22

'SLC39A4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.715 (Fisher's exact test), Q value = 1

Table S3197. Gene #400: 'SLC39A4 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
SLC39A4 MUTATED	3	0	2
SLC39A4 WILD-TYPE	34	16	29

'SLC39A4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.247 (Fisher's exact test), Q value = 1

Table S3198. Gene #400: 'SLC39A4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
SLC39A4 MUTATED	3	2	0
SLC39A4 WILD-TYPE	35	18	26

'SLC39A4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.603 (Fisher's exact test), Q value = 1

Table S3199. Gene #400: 'SLC39A4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
SLC39A4 MUTATED	2	0	3
SLC39A4 WILD-TYPE	25	19	35

'TEAD4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.555 (Fisher's exact test), Q value = 1

Table S3200. Gene #401: 'TEAD4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
TEAD4 MUTATED	2	2	0
TEAD4 WILD-TYPE	22	43	21

'TEAD4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.827 (Fisher's exact test), Q value = 1

Table S3201. Gene #401: 'TEAD4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
TEAD4 MUTATED	2	1	1
TEAD4 WILD-TYPE	29	34	23

'TEAD4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.68 (Fisher's exact test), Q value = 1

Table S3202. Gene #401: 'TEAD4 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
TEAD4 MUTATED	2	2	0
TEAD4 WILD-TYPE	38	23	19

'TEAD4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0263 (Fisher's exact test), Q value = 1

Table S3203. Gene #401: 'TEAD4 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
TEAD4 MUTATED	1	2	1
TEAD4 WILD-TYPE	0	29	51

Figure S248. Get High-res Image Gene #401: 'TEAD4 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'TEAD4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.742 (Fisher's exact test), Q value = 1

Table S3204. Gene #401: 'TEAD4 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
TEAD4 MUTATED	1	2	0	1
TEAD4 WILD-TYPE	30	18	11	21

'TEAD4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.037 (Fisher's exact test), Q value = 1

Table S3205. Gene #401: 'TEAD4 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
TEAD4 MUTATED	0	0	4
TEAD4 WILD-TYPE	37	16	27

Figure S249. Get High-res Image Gene #401: 'TEAD4 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'TEAD4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0256 (Fisher's exact test), Q value = 1

Table S3206. Gene #401: 'TEAD4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
TEAD4 MUTATED	0	3	1
TEAD4 WILD-TYPE	38	17	25

Figure S250. Get High-res Image Gene #401: 'TEAD4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

'TEAD4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.2 (Fisher's exact test), Q value = 1

Table S3207. Gene #401: 'TEAD4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
TEAD4 MUTATED	3	0	1
TEAD4 WILD-TYPE	24	19	37

'TDRD10 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.605 (Fisher's exact test), Q value = 1

Table S3208. Gene #402: 'TDRD10 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
TDRD10 MUTATED	0	2	1
TDRD10 WILD-TYPE	24	43	20

'TDRD10 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.483 (Fisher's exact test), Q value = 1

Table S3209. Gene #402: 'TDRD10 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
TDRD10 MUTATED	0	2	1
TDRD10 WILD-TYPE	31	33	23

'TDRD10 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.596 (Fisher's exact test), Q value = 1

Table S3210. Gene #402: 'TDRD10 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
TDRD10 MUTATED	2	0	1
TDRD10 WILD-TYPE	38	25	18

'TDRD10 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S3211. Gene #402: 'TDRD10 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
TDRD10 MUTATED	0	1	2
TDRD10 WILD-TYPE	1	30	50

'TDRD10 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.573 (Fisher's exact test), Q value = 1

Table S3212. Gene #402: 'TDRD10 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
TDRD10 MUTATED	1	0	0	2
TDRD10 WILD-TYPE	30	20	11	20

'TDRD10 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.41 (Fisher's exact test), Q value = 1

Table S3213. Gene #402: 'TDRD10 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
TDRD10 MUTATED	2	1	0
TDRD10 WILD-TYPE	35	15	31

'TDRD10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.453 (Fisher's exact test), Q value = 1

Table S3214. Gene #402: 'TDRD10 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
TDRD10 MUTATED	1	0	2
TDRD10 WILD-TYPE	37	20	24

'TDRD10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.158 (Fisher's exact test), Q value = 1

Table S3215. Gene #402: 'TDRD10 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
TDRD10 MUTATED	0	2	1
TDRD10 WILD-TYPE	27	17	37

'TTF1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.201 (Fisher's exact test), Q value = 1

Table S3216. Gene #403: 'TTF1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
TTF1 MUTATED	0	1	2
TTF1 WILD-TYPE	24	44	19

'TTF1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.184 (Fisher's exact test), Q value = 1

Table S3217. Gene #403: 'TTF1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
TTF1 MUTATED	1	0	2
TTF1 WILD-TYPE	30	35	22

'TTF1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.795 (Fisher's exact test), Q value = 1

Table S3218. Gene #403: 'TTF1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
TTF1 MUTATED	1	1	1
TTF1 WILD-TYPE	39	24	18

'TTF1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00488 (Fisher's exact test), Q value = 1

Table S3219. Gene #403: 'TTF1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
TTF1 MUTATED	1	2	0
TTF1 WILD-TYPE	0	29	52

Figure S251. Get High-res Image Gene #403: 'TTF1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'TTF1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0939 (Fisher's exact test), Q value = 1

Table S3220. Gene #403: 'TTF1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
TTF1 MUTATED	0	2	1	0
TTF1 WILD-TYPE	31	18	10	22

'TTF1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.217 (Fisher's exact test), Q value = 1

Table S3221. Gene #403: 'TTF1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
TTF1 MUTATED	0	1	2
TTF1 WILD-TYPE	37	15	29

'TTF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0911 (Fisher's exact test), Q value = 1

Table S3222. Gene #403: 'TTF1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
TTF1 MUTATED	0	2	1
TTF1 WILD-TYPE	38	18	25

'TTF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.228 (Fisher's exact test), Q value = 1

Table S3223. Gene #403: 'TTF1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
TTF1 MUTATED	2	1	0
TTF1 WILD-TYPE	25	18	38

'RAB11FIP1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.356 (Fisher's exact test), Q value = 1

Table S3224. Gene #404: 'RAB11FIP1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
RAB11FIP1 MUTATED	0	4	2
RAB11FIP1 WILD-TYPE	24	41	19

'RAB11FIP1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.76 (Fisher's exact test), Q value = 1

Table S3225. Gene #404: 'RAB11FIP1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
RAB11FIP1 MUTATED	3	2	1
RAB11FIP1 WILD-TYPE	28	33	23

'RAB11FIP1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.181 (Fisher's exact test), Q value = 1

Table S3226. Gene #404: 'RAB11FIP1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
RAB11FIP1 MUTATED	5	0	1
RAB11FIP1 WILD-TYPE	35	25	18

'RAB11FIP1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.048 (Fisher's exact test), Q value = 1

Table S3227. Gene #404: 'RAB11FIP1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
RAB11FIP1 MUTATED	1	1	4
RAB11FIP1 WILD-TYPE	0	30	48

Figure S252. Get High-res Image Gene #404: 'RAB11FIP1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'RAB11FIP1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.888 (Fisher's exact test), Q value = 1

Table S3228. Gene #404: 'RAB11FIP1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
RAB11FIP1 MUTATED	2	2	1	1
RAB11FIP1 WILD-TYPE	29	18	10	21

'RAB11FIP1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.858 (Fisher's exact test), Q value = 1

Table S3229. Gene #404: 'RAB11FIP1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
RAB11FIP1 MUTATED	2	1	3
RAB11FIP1 WILD-TYPE	35	15	28

'RAB11FIP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.865 (Fisher's exact test), Q value = 1

Table S3230. Gene #404: 'RAB11FIP1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
RAB11FIP1 MUTATED	2	2	2
RAB11FIP1 WILD-TYPE	36	18	24

'RAB11FIP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.862 (Fisher's exact test), Q value = 1

Table S3231. Gene #404: 'RAB11FIP1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
RAB11FIP1 MUTATED	2	2	2
RAB11FIP1 WILD-TYPE	25	17	36

'HABP4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.593 (Fisher's exact test), Q value = 1

Table S3232. Gene #405: 'HABP4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
HABP4 MUTATED	2	3	0
HABP4 WILD-TYPE	22	42	21

'HABP4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S3233. Gene #405: 'HABP4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
HABP4 MUTATED	2	2	1
HABP4 WILD-TYPE	29	33	23

'HABP4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.5 (Fisher's exact test), Q value = 1

Table S3234. Gene #405: 'HABP4 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
HABP4 MUTATED	4	1	0
HABP4 WILD-TYPE	36	24	19

'HABP4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0229 (Fisher's exact test), Q value = 1

Table S3235. Gene #405: 'HABP4 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
HABP4 MUTATED	1	0	4
HABP4 WILD-TYPE	0	31	48

Figure S253. Get High-res Image Gene #405: 'HABP4 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'HABP4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.927 (Fisher's exact test), Q value = 1

Table S3236. Gene #405: 'HABP4 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
HABP4 MUTATED	2	1	0	2
HABP4 WILD-TYPE	29	19	11	20

'HABP4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.715 (Fisher's exact test), Q value = 1

Table S3237. Gene #405: 'HABP4 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
HABP4 MUTATED	3	0	2
HABP4 WILD-TYPE	34	16	29

'HABP4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.71 (Fisher's exact test), Q value = 1

Table S3238. Gene #405: 'HABP4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
HABP4 MUTATED	2	2	1
HABP4 WILD-TYPE	36	18	25

'HABP4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S3239. Gene #405: 'HABP4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
HABP4 MUTATED	2	1	2
HABP4 WILD-TYPE	25	18	36

'ATXN1 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S3240. Gene #406: 'ATXN1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
ATXN1 MUTATED	1	3	1
ATXN1 WILD-TYPE	23	42	20

'ATXN1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.849 (Fisher's exact test), Q value = 1

Table S3241. Gene #406: 'ATXN1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
ATXN1 MUTATED	1	2	2
ATXN1 WILD-TYPE	30	33	22

'ATXN1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S3242. Gene #406: 'ATXN1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
ATXN1 MUTATED	3	1	1
ATXN1 WILD-TYPE	37	24	18

'ATXN1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.065 (Fisher's exact test), Q value = 1

Table S3243. Gene #406: 'ATXN1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
ATXN1 MUTATED	1	1	3
ATXN1 WILD-TYPE	0	30	49

'ATXN1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.73 (Fisher's exact test), Q value = 1

Table S3244. Gene #406: 'ATXN1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
ATXN1 MUTATED	1	1	1	2
ATXN1 WILD-TYPE	30	19	10	20

'ATXN1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S3245. Gene #406: 'ATXN1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
ATXN1 MUTATED	2	1	2
ATXN1 WILD-TYPE	35	15	29

'ATXN1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S3246. Gene #406: 'ATXN1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
ATXN1 MUTATED	2	1	2
ATXN1 WILD-TYPE	36	19	24

'ATXN1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.708 (Fisher's exact test), Q value = 1

Table S3247. Gene #406: 'ATXN1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
ATXN1 MUTATED	1	2	2
ATXN1 WILD-TYPE	26	17	36

'PCDHA9 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.377 (Fisher's exact test), Q value = 1

Table S3248. Gene #407: 'PCDHA9 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
PCDHA9 MUTATED	4	3	1
PCDHA9 WILD-TYPE	20	42	20

'PCDHA9 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0552 (Fisher's exact test), Q value = 1

Table S3249. Gene #407: 'PCDHA9 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
PCDHA9 MUTATED	6	1	1
PCDHA9 WILD-TYPE	25	34	23

'PCDHA9 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.678 (Fisher's exact test), Q value = 1

Table S3250. Gene #407: 'PCDHA9 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
PCDHA9 MUTATED	4	1	2
PCDHA9 WILD-TYPE	36	24	17

'PCDHA9 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0426 (Fisher's exact test), Q value = 1

Table S3251. Gene #407: 'PCDHA9 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
PCDHA9 MUTATED	1	1	5
PCDHA9 WILD-TYPE	0	30	47

Figure S254. Get High-res Image Gene #407: 'PCDHA9 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'PCDHA9 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S3252. Gene #407: 'PCDHA9 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
PCDHA9 MUTATED	3	1	1	2
PCDHA9 WILD-TYPE	28	19	10	20

'PCDHA9 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.519 (Fisher's exact test), Q value = 1

Table S3253. Gene #407: 'PCDHA9 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
PCDHA9 MUTATED	4	0	3
PCDHA9 WILD-TYPE	33	16	28

'PCDHA9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.885 (Fisher's exact test), Q value = 1

Table S3254. Gene #407: 'PCDHA9 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
PCDHA9 MUTATED	4	1	2
PCDHA9 WILD-TYPE	34	19	24

'PCDHA9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.313 (Fisher's exact test), Q value = 1

Table S3255. Gene #407: 'PCDHA9 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
PCDHA9 MUTATED	3	0	4
PCDHA9 WILD-TYPE	24	19	34

'GSN MUTATION STATUS' versus 'CN_CNMF'

P value = 0.632 (Fisher's exact test), Q value = 1

Table S3256. Gene #408: 'GSN MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
GSN MUTATED	2	2	2
GSN WILD-TYPE	22	43	19

'GSN MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.275 (Fisher's exact test), Q value = 1

Table S3257. Gene #408: 'GSN MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
GSN MUTATED	4	1	1
GSN WILD-TYPE	27	34	23

'GSN MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.299 (Fisher's exact test), Q value = 1

Table S3258. Gene #408: 'GSN MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
GSN MUTATED	5	1	0
GSN WILD-TYPE	35	24	19

'GSN MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.048 (Fisher's exact test), Q value = 1

Table S3259. Gene #408: 'GSN MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
GSN MUTATED	1	1	4
GSN WILD-TYPE	0	30	48

Figure S255. Get High-res Image Gene #408: 'GSN MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'GSN MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.258 (Fisher's exact test), Q value = 1

Table S3260. Gene #408: 'GSN MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
GSN MUTATED	4	2	0	0
GSN WILD-TYPE	27	18	11	22

'GSN MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.482 (Fisher's exact test), Q value = 1

Table S3261. Gene #408: 'GSN MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
GSN MUTATED	4	0	2
GSN WILD-TYPE	33	16	29

'GSN MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.656 (Fisher's exact test), Q value = 1

Table S3262. Gene #408: 'GSN MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
GSN MUTATED	4	1	1
GSN WILD-TYPE	34	19	25

'GSN MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.473 (Fisher's exact test), Q value = 1

Table S3263. Gene #408: 'GSN MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
GSN MUTATED	2	0	4
GSN WILD-TYPE	25	19	34

'AEBP1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.423 (Fisher's exact test), Q value = 1

Table S3264. Gene #409: 'AEBP1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
AEBP1 MUTATED	0	4	1
AEBP1 WILD-TYPE	24	41	20

'AEBP1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.119 (Fisher's exact test), Q value = 1

Table S3265. Gene #409: 'AEBP1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
AEBP1 MUTATED	0	2	3
AEBP1 WILD-TYPE	31	33	21

'AEBP1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S3266. Gene #409: 'AEBP1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
AEBP1 MUTATED	3	1	1
AEBP1 WILD-TYPE	37	24	18

'AEBP1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.065 (Fisher's exact test), Q value = 1

Table S3267. Gene #409: 'AEBP1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
AEBP1 MUTATED	1	1	3
AEBP1 WILD-TYPE	0	30	49

'AEBP1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0335 (Fisher's exact test), Q value = 1

Table S3268. Gene #409: 'AEBP1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
AEBP1 MUTATED	0	1	0	4
AEBP1 WILD-TYPE	31	19	11	18

Figure S256. Get High-res Image Gene #409: 'AEBP1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

'AEBP1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S3269. Gene #409: 'AEBP1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
AEBP1 MUTATED	2	1	2
AEBP1 WILD-TYPE	35	15	29

'AEBP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.509 (Fisher's exact test), Q value = 1

Table S3270. Gene #409: 'AEBP1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
AEBP1 MUTATED	1	2	2
AEBP1 WILD-TYPE	37	18	24

'AEBP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.507 (Fisher's exact test), Q value = 1

Table S3271. Gene #409: 'AEBP1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
AEBP1 MUTATED	2	2	1
AEBP1 WILD-TYPE	25	17	37

'THBS1 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S3272. Gene #410: 'THBS1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
THBS1 MUTATED	1	2	0
THBS1 WILD-TYPE	23	43	21

'THBS1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.266 (Fisher's exact test), Q value = 1

Table S3273. Gene #410: 'THBS1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
THBS1 MUTATED	0	1	2
THBS1 WILD-TYPE	31	34	22

'THBS1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.596 (Fisher's exact test), Q value = 1

Table S3274. Gene #410: 'THBS1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
THBS1 MUTATED	2	0	1
THBS1 WILD-TYPE	38	25	18

'THBS1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0357 (Fisher's exact test), Q value = 1

Table S3275. Gene #410: 'THBS1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
THBS1 MUTATED	1	1	1
THBS1 WILD-TYPE	0	30	51

Figure S257. Get High-res Image Gene #410: 'THBS1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'THBS1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.498 (Fisher's exact test), Q value = 1

Table S3276. Gene #410: 'THBS1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
THBS1 MUTATED	1	1	1	0
THBS1 WILD-TYPE	30	19	10	22

'THBS1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.783 (Fisher's exact test), Q value = 1

Table S3277. Gene #410: 'THBS1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
THBS1 MUTATED	1	1	1
THBS1 WILD-TYPE	36	15	30

'THBS1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S3278. Gene #410: 'THBS1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
THBS1 MUTATED	1	1	1
THBS1 WILD-TYPE	37	19	25

'THBS1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S3279. Gene #410: 'THBS1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
THBS1 MUTATED	1	1	1
THBS1 WILD-TYPE	26	18	37

'UNC50 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.448 (Fisher's exact test), Q value = 1

Table S3280. Gene #411: 'UNC50 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
UNC50 MUTATED	2	1	1
UNC50 WILD-TYPE	22	44	20

'UNC50 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0615 (Fisher's exact test), Q value = 1

Table S3281. Gene #411: 'UNC50 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
UNC50 MUTATED	1	0	3
UNC50 WILD-TYPE	30	35	21

'UNC50 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.138 (Fisher's exact test), Q value = 1

Table S3282. Gene #411: 'UNC50 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
UNC50 MUTATED	4	0	0
UNC50 WILD-TYPE	36	25	19

'UNC50 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0138 (Fisher's exact test), Q value = 1

Table S3283. Gene #411: 'UNC50 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
UNC50 MUTATED	1	0	3
UNC50 WILD-TYPE	0	31	49

Figure S258. Get High-res Image Gene #411: 'UNC50 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'UNC50 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.457 (Fisher's exact test), Q value = 1

Table S3284. Gene #411: 'UNC50 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
UNC50 MUTATED	3	1	0	0
UNC50 WILD-TYPE	28	19	11	22

'UNC50 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.526 (Fisher's exact test), Q value = 1

Table S3285. Gene #411: 'UNC50 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
UNC50 MUTATED	3	0	1
UNC50 WILD-TYPE	34	16	30

'UNC50 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.353 (Fisher's exact test), Q value = 1

Table S3286. Gene #411: 'UNC50 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
UNC50 MUTATED	3	1	0
UNC50 WILD-TYPE	35	19	26

'UNC50 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.554 (Fisher's exact test), Q value = 1

Table S3287. Gene #411: 'UNC50 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
UNC50 MUTATED	1	0	3
UNC50 WILD-TYPE	26	19	35

'CPXM2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.117 (Fisher's exact test), Q value = 1

Table S3288. Gene #412: 'CPXM2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
CPXM2 MUTATED	3	1	0
CPXM2 WILD-TYPE	21	44	21

'CPXM2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.827 (Fisher's exact test), Q value = 1

Table S3289. Gene #412: 'CPXM2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
CPXM2 MUTATED	2	1	1
CPXM2 WILD-TYPE	29	34	23

'CPXM2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.808 (Fisher's exact test), Q value = 1

Table S3290. Gene #412: 'CPXM2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
CPXM2 MUTATED	3	1	0
CPXM2 WILD-TYPE	37	24	19

'CPXM2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S3291. Gene #412: 'CPXM2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
CPXM2 MUTATED	0	1	3
CPXM2 WILD-TYPE	1	30	49

'CPXM2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.457 (Fisher's exact test), Q value = 1

Table S3292. Gene #412: 'CPXM2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
CPXM2 MUTATED	3	1	0	0
CPXM2 WILD-TYPE	28	19	11	22

'CPXM2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.829 (Fisher's exact test), Q value = 1

Table S3293. Gene #412: 'CPXM2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
CPXM2 MUTATED	2	0	2
CPXM2 WILD-TYPE	35	16	29

'CPXM2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.353 (Fisher's exact test), Q value = 1

Table S3294. Gene #412: 'CPXM2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
CPXM2 MUTATED	3	1	0
CPXM2 WILD-TYPE	35	19	26

'CPXM2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.554 (Fisher's exact test), Q value = 1

Table S3295. Gene #412: 'CPXM2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
CPXM2 MUTATED	1	0	3
CPXM2 WILD-TYPE	26	19	35

'KCND3 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S3296. Gene #413: 'KCND3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
KCND3 MUTATED	1	2	1
KCND3 WILD-TYPE	23	43	20

'KCND3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.827 (Fisher's exact test), Q value = 1

Table S3297. Gene #413: 'KCND3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
KCND3 MUTATED	2	1	1
KCND3 WILD-TYPE	29	34	23

'KCND3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.441 (Fisher's exact test), Q value = 1

Table S3298. Gene #413: 'KCND3 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
KCND3 MUTATED	3	0	1
KCND3 WILD-TYPE	37	25	18

'KCND3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0639 (Fisher's exact test), Q value = 1

Table S3299. Gene #413: 'KCND3 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
KCND3 MUTATED	1	1	2
KCND3 WILD-TYPE	0	30	50

'KCND3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S3300. Gene #413: 'KCND3 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
KCND3 MUTATED	2	1	0	1
KCND3 WILD-TYPE	29	19	11	21

'KCND3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S3301. Gene #413: 'KCND3 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
KCND3 MUTATED	2	1	1
KCND3 WILD-TYPE	35	15	30

'KCND3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S3302. Gene #413: 'KCND3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
KCND3 MUTATED	2	1	1
KCND3 WILD-TYPE	36	19	25

'KCND3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S3303. Gene #413: 'KCND3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
KCND3 MUTATED	1	1	2
KCND3 WILD-TYPE	26	18	36

'GRM1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.377 (Fisher's exact test), Q value = 1

Table S3304. Gene #414: 'GRM1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
GRM1 MUTATED	1	7	2
GRM1 WILD-TYPE	23	38	19

'GRM1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.764 (Fisher's exact test), Q value = 1

Table S3305. Gene #414: 'GRM1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
GRM1 MUTATED	3	5	2
GRM1 WILD-TYPE	28	30	22

'GRM1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.458 (Fisher's exact test), Q value = 1

Table S3306. Gene #414: 'GRM1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
GRM1 MUTATED	4	2	4
GRM1 WILD-TYPE	36	23	15

'GRM1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0186 (Fisher's exact test), Q value = 1

Table S3307. Gene #414: 'GRM1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
GRM1 MUTATED	1	6	3
GRM1 WILD-TYPE	0	25	49

Figure S259. Get High-res Image Gene #414: 'GRM1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'GRM1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.373 (Fisher's exact test), Q value = 1

Table S3308. Gene #414: 'GRM1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
GRM1 MUTATED	3	4	2	1
GRM1 WILD-TYPE	28	16	9	21

'GRM1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.227 (Fisher's exact test), Q value = 1

Table S3309. Gene #414: 'GRM1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
GRM1 MUTATED	2	3	5
GRM1 WILD-TYPE	35	13	26

'GRM1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.19 (Fisher's exact test), Q value = 1

Table S3310. Gene #414: 'GRM1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
GRM1 MUTATED	2	4	4
GRM1 WILD-TYPE	36	16	22

'GRM1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.515 (Fisher's exact test), Q value = 1

Table S3311. Gene #414: 'GRM1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
GRM1 MUTATED	4	3	3
GRM1 WILD-TYPE	23	16	35

'MRPL48 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.605 (Fisher's exact test), Q value = 1

Table S3312. Gene #415: 'MRPL48 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
MRPL48 MUTATED	0	2	1
MRPL48 WILD-TYPE	24	43	20

'MRPL48 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.483 (Fisher's exact test), Q value = 1

Table S3313. Gene #415: 'MRPL48 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
MRPL48 MUTATED	0	2	1
MRPL48 WILD-TYPE	31	33	23

'MRPL48 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.795 (Fisher's exact test), Q value = 1

Table S3314. Gene #415: 'MRPL48 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
MRPL48 MUTATED	1	1	1
MRPL48 WILD-TYPE	39	24	18

'MRPL48 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00488 (Fisher's exact test), Q value = 1

Table S3315. Gene #415: 'MRPL48 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
MRPL48 MUTATED	1	2	0
MRPL48 WILD-TYPE	0	29	52

Figure S260. Get High-res Image Gene #415: 'MRPL48 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'MRPL48 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0252 (Fisher's exact test), Q value = 1

Table S3316. Gene #415: 'MRPL48 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
MRPL48 MUTATED	0	3	0	0
MRPL48 WILD-TYPE	31	17	11	22

Figure S261. Get High-res Image Gene #415: 'MRPL48 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

'MRPL48 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.139 (Fisher's exact test), Q value = 1

Table S3317. Gene #415: 'MRPL48 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
MRPL48 MUTATED	0	0	3
MRPL48 WILD-TYPE	37	16	28

'MRPL48 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.012 (Fisher's exact test), Q value = 1

Table S3318. Gene #415: 'MRPL48 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
MRPL48 MUTATED	0	3	0
MRPL48 WILD-TYPE	38	17	26

Figure S262. Get High-res Image Gene #415: 'MRPL48 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

'MRPL48 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0409 (Fisher's exact test), Q value = 1

Table S3319. Gene #415: 'MRPL48 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
MRPL48 MUTATED	3	0	0
MRPL48 WILD-TYPE	24	19	38

Figure S263. Get High-res Image Gene #415: 'MRPL48 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

'EIF4H MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S3320. Gene #416: 'EIF4H MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
EIF4H MUTATED	1	2	0
EIF4H WILD-TYPE	23	43	21

'EIF4H MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0172 (Fisher's exact test), Q value = 1

Table S3321. Gene #416: 'EIF4H MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
EIF4H MUTATED	0	0	3
EIF4H WILD-TYPE	31	35	21

Figure S264. Get High-res Image Gene #416: 'EIF4H MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'EIF4H MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.596 (Fisher's exact test), Q value = 1

Table S3322. Gene #416: 'EIF4H MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
EIF4H MUTATED	2	0	1
EIF4H WILD-TYPE	38	25	18

'EIF4H MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0357 (Fisher's exact test), Q value = 1

Table S3323. Gene #416: 'EIF4H MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
EIF4H MUTATED	1	1	1
EIF4H WILD-TYPE	0	30	51

Figure S265. Get High-res Image Gene #416: 'EIF4H MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'EIF4H MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S3324. Gene #416: 'EIF4H MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
EIF4H MUTATED	1	1	0	1
EIF4H WILD-TYPE	30	19	11	21

'EIF4H MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.783 (Fisher's exact test), Q value = 1

Table S3325. Gene #416: 'EIF4H MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
EIF4H MUTATED	1	1	1
EIF4H WILD-TYPE	36	15	30

'EIF4H MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S3326. Gene #416: 'EIF4H MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
EIF4H MUTATED	1	1	1
EIF4H WILD-TYPE	37	19	25

'EIF4H MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S3327. Gene #416: 'EIF4H MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
EIF4H MUTATED	1	1	1
EIF4H WILD-TYPE	26	18	37

'ZFHX3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.605 (Fisher's exact test), Q value = 1

Table S3328. Gene #417: 'ZFHX3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
ZFHX3 MUTATED	6	7	4
ZFHX3 WILD-TYPE	18	38	17

'ZFHX3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.107 (Fisher's exact test), Q value = 1

Table S3329. Gene #417: 'ZFHX3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
ZFHX3 MUTATED	7	3	7
ZFHX3 WILD-TYPE	24	32	17

'ZFHX3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.248 (Fisher's exact test), Q value = 1

Table S3330. Gene #417: 'ZFHX3 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
ZFHX3 MUTATED	10	2	4
ZFHX3 WILD-TYPE	30	23	15

'ZFHX3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.115 (Fisher's exact test), Q value = 1

Table S3331. Gene #417: 'ZFHX3 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
ZFHX3 MUTATED	1	4	11
ZFHX3 WILD-TYPE	0	27	41

'ZFHX3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.589 (Fisher's exact test), Q value = 1

Table S3332. Gene #417: 'ZFHX3 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
ZFHX3 MUTATED	7	2	3	4
ZFHX3 WILD-TYPE	24	18	8	18

'ZFHX3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.186 (Fisher's exact test), Q value = 1

Table S3333. Gene #417: 'ZFHX3 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
ZFHX3 MUTATED	10	3	3
ZFHX3 WILD-TYPE	27	13	28

'ZFHX3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.492 (Fisher's exact test), Q value = 1

Table S3334. Gene #417: 'ZFHX3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
ZFHX3 MUTATED	9	2	5
ZFHX3 WILD-TYPE	29	18	21

'ZFHX3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.311 (Fisher's exact test), Q value = 1

Table S3335. Gene #417: 'ZFHX3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
ZFHX3 MUTATED	3	3	10
ZFHX3 WILD-TYPE	24	16	28

'VEZF1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.593 (Fisher's exact test), Q value = 1

Table S3336. Gene #418: 'VEZF1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
VEZF1 MUTATED	2	3	0
VEZF1 WILD-TYPE	22	42	21

'VEZF1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.849 (Fisher's exact test), Q value = 1

Table S3337. Gene #418: 'VEZF1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
VEZF1 MUTATED	1	2	2
VEZF1 WILD-TYPE	30	33	22

'VEZF1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S3338. Gene #418: 'VEZF1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
VEZF1 MUTATED	3	1	1
VEZF1 WILD-TYPE	37	24	18

'VEZF1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0428 (Fisher's exact test), Q value = 1

Table S3339. Gene #418: 'VEZF1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
VEZF1 MUTATED	1	2	2
VEZF1 WILD-TYPE	0	29	50

Figure S266. Get High-res Image Gene #418: 'VEZF1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'VEZF1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.192 (Fisher's exact test), Q value = 1

Table S3340. Gene #418: 'VEZF1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
VEZF1 MUTATED	2	1	2	0
VEZF1 WILD-TYPE	29	19	9	22

'VEZF1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S3341. Gene #418: 'VEZF1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
VEZF1 MUTATED	2	1	2
VEZF1 WILD-TYPE	35	15	29

'VEZF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.71 (Fisher's exact test), Q value = 1

Table S3342. Gene #418: 'VEZF1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
VEZF1 MUTATED	2	2	1
VEZF1 WILD-TYPE	36	18	25

'VEZF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S3343. Gene #418: 'VEZF1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
VEZF1 MUTATED	2	1	2
VEZF1 WILD-TYPE	25	18	36

'CCDC151 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.352 (Fisher's exact test), Q value = 1

Table S3344. Gene #419: 'CCDC151 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
CCDC151 MUTATED	0	3	2
CCDC151 WILD-TYPE	24	42	19

'CCDC151 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.119 (Fisher's exact test), Q value = 1

Table S3345. Gene #419: 'CCDC151 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
CCDC151 MUTATED	0	2	3
CCDC151 WILD-TYPE	31	33	21

'CCDC151 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.848 (Fisher's exact test), Q value = 1

Table S3346. Gene #419: 'CCDC151 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
CCDC151 MUTATED	2	2	1
CCDC151 WILD-TYPE	38	23	18

'CCDC151 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.065 (Fisher's exact test), Q value = 1

Table S3347. Gene #419: 'CCDC151 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
CCDC151 MUTATED	1	1	3
CCDC151 WILD-TYPE	0	30	49

'CCDC151 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.176 (Fisher's exact test), Q value = 1

Table S3348. Gene #419: 'CCDC151 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
CCDC151 MUTATED	0	2	1	2
CCDC151 WILD-TYPE	31	18	10	20

'CCDC151 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.598 (Fisher's exact test), Q value = 1

Table S3349. Gene #419: 'CCDC151 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
CCDC151 MUTATED	2	0	3
CCDC151 WILD-TYPE	35	16	28

'CCDC151 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.71 (Fisher's exact test), Q value = 1

Table S3350. Gene #419: 'CCDC151 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
CCDC151 MUTATED	2	2	1
CCDC151 WILD-TYPE	36	18	25

'CCDC151 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.365 (Fisher's exact test), Q value = 1

Table S3351. Gene #419: 'CCDC151 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
CCDC151 MUTATED	3	0	2
CCDC151 WILD-TYPE	24	19	36

'CR2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.591 (Fisher's exact test), Q value = 1

Table S3352. Gene #420: 'CR2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
CR2 MUTATED	3	3	1
CR2 WILD-TYPE	21	42	20

'CR2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.888 (Fisher's exact test), Q value = 1

Table S3353. Gene #420: 'CR2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
CR2 MUTATED	3	2	2
CR2 WILD-TYPE	28	33	22

'CR2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.755 (Fisher's exact test), Q value = 1

Table S3354. Gene #420: 'CR2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
CR2 MUTATED	3	1	2
CR2 WILD-TYPE	37	24	17

'CR2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.095 (Fisher's exact test), Q value = 1

Table S3355. Gene #420: 'CR2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
CR2 MUTATED	1	2	3
CR2 WILD-TYPE	0	29	49

'CR2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.734 (Fisher's exact test), Q value = 1

Table S3356. Gene #420: 'CR2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
CR2 MUTATED	3	2	0	1
CR2 WILD-TYPE	28	18	11	21

'CR2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.858 (Fisher's exact test), Q value = 1

Table S3357. Gene #420: 'CR2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
CR2 MUTATED	2	1	3
CR2 WILD-TYPE	35	15	28

'CR2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.758 (Fisher's exact test), Q value = 1

Table S3358. Gene #420: 'CR2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
CR2 MUTATED	3	2	1
CR2 WILD-TYPE	35	18	25

'CR2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.758 (Fisher's exact test), Q value = 1

Table S3359. Gene #420: 'CR2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
CR2 MUTATED	3	1	2
CR2 WILD-TYPE	24	18	36

'YBX2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.428 (Fisher's exact test), Q value = 1

Table S3360. Gene #421: 'YBX2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
YBX2 MUTATED	0	3	0
YBX2 WILD-TYPE	24	42	21

'YBX2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.483 (Fisher's exact test), Q value = 1

Table S3361. Gene #421: 'YBX2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
YBX2 MUTATED	0	2	1
YBX2 WILD-TYPE	31	33	23

'YBX2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.211 (Fisher's exact test), Q value = 1

Table S3362. Gene #421: 'YBX2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
YBX2 MUTATED	1	0	2
YBX2 WILD-TYPE	39	25	17

'YBX2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00488 (Fisher's exact test), Q value = 1

Table S3363. Gene #421: 'YBX2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
YBX2 MUTATED	1	2	0
YBX2 WILD-TYPE	0	29	52

Figure S267. Get High-res Image Gene #421: 'YBX2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'YBX2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.164 (Fisher's exact test), Q value = 1

Table S3364. Gene #421: 'YBX2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
YBX2 MUTATED	0	2	0	1
YBX2 WILD-TYPE	31	18	11	21

'YBX2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.217 (Fisher's exact test), Q value = 1

Table S3365. Gene #421: 'YBX2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
YBX2 MUTATED	0	1	2
YBX2 WILD-TYPE	37	15	29

'YBX2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0911 (Fisher's exact test), Q value = 1

Table S3366. Gene #421: 'YBX2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
YBX2 MUTATED	0	2	1
YBX2 WILD-TYPE	38	18	25

'YBX2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.228 (Fisher's exact test), Q value = 1

Table S3367. Gene #421: 'YBX2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
YBX2 MUTATED	2	1	0
YBX2 WILD-TYPE	25	18	38

'CCDC63 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.428 (Fisher's exact test), Q value = 1

Table S3368. Gene #422: 'CCDC63 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
CCDC63 MUTATED	0	3	0
CCDC63 WILD-TYPE	24	42	21

'CCDC63 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.483 (Fisher's exact test), Q value = 1

Table S3369. Gene #422: 'CCDC63 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
CCDC63 MUTATED	0	2	1
CCDC63 WILD-TYPE	31	33	23

'CCDC63 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.795 (Fisher's exact test), Q value = 1

Table S3370. Gene #422: 'CCDC63 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
CCDC63 MUTATED	1	1	1
CCDC63 WILD-TYPE	39	24	18

'CCDC63 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00488 (Fisher's exact test), Q value = 1

Table S3371. Gene #422: 'CCDC63 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
CCDC63 MUTATED	1	2	0
CCDC63 WILD-TYPE	0	29	52

Figure S268. Get High-res Image Gene #422: 'CCDC63 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'CCDC63 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0939 (Fisher's exact test), Q value = 1

Table S3372. Gene #422: 'CCDC63 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
CCDC63 MUTATED	0	2	1	0
CCDC63 WILD-TYPE	31	18	10	22

'CCDC63 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.217 (Fisher's exact test), Q value = 1

Table S3373. Gene #422: 'CCDC63 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
CCDC63 MUTATED	0	1	2
CCDC63 WILD-TYPE	37	15	29

'CCDC63 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0911 (Fisher's exact test), Q value = 1

Table S3374. Gene #422: 'CCDC63 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
CCDC63 MUTATED	0	2	1
CCDC63 WILD-TYPE	38	18	25

'CCDC63 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.228 (Fisher's exact test), Q value = 1

Table S3375. Gene #422: 'CCDC63 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
CCDC63 MUTATED	2	1	0
CCDC63 WILD-TYPE	25	18	38

'GPR113 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.473 (Fisher's exact test), Q value = 1

Table S3376. Gene #423: 'GPR113 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
GPR113 MUTATED	2	4	0
GPR113 WILD-TYPE	22	41	21

'GPR113 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.304 (Fisher's exact test), Q value = 1

Table S3377. Gene #423: 'GPR113 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
GPR113 MUTATED	1	1	3
GPR113 WILD-TYPE	30	34	21

'GPR113 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0103 (Fisher's exact test), Q value = 1

Table S3378. Gene #423: 'GPR113 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
GPR113 MUTATED	1	0	4
GPR113 WILD-TYPE	39	25	15

Figure S269. Get High-res Image Gene #423: 'GPR113 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

'GPR113 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0141 (Fisher's exact test), Q value = 1

Table S3379. Gene #423: 'GPR113 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
GPR113 MUTATED	1	3	1
GPR113 WILD-TYPE	0	28	51

Figure S270. Get High-res Image Gene #423: 'GPR113 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'GPR113 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0749 (Fisher's exact test), Q value = 1

Table S3380. Gene #423: 'GPR113 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
GPR113 MUTATED	0	1	2	2
GPR113 WILD-TYPE	31	19	9	20

'GPR113 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0989 (Fisher's exact test), Q value = 1

Table S3381. Gene #423: 'GPR113 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
GPR113 MUTATED	1	3	1
GPR113 WILD-TYPE	36	13	30

'GPR113 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0224 (Fisher's exact test), Q value = 1

Table S3382. Gene #423: 'GPR113 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
GPR113 MUTATED	0	1	4
GPR113 WILD-TYPE	38	19	22

Figure S271. Get High-res Image Gene #423: 'GPR113 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

'GPR113 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.141 (Fisher's exact test), Q value = 1

Table S3383. Gene #423: 'GPR113 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
GPR113 MUTATED	1	3	1
GPR113 WILD-TYPE	26	16	37

'EPHX1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.805 (Fisher's exact test), Q value = 1

Table S3384. Gene #424: 'EPHX1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
EPHX1 MUTATED	1	3	0
EPHX1 WILD-TYPE	23	42	21

'EPHX1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S3385. Gene #424: 'EPHX1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
EPHX1 MUTATED	1	2	1
EPHX1 WILD-TYPE	30	33	23

'EPHX1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.255 (Fisher's exact test), Q value = 1

Table S3386. Gene #424: 'EPHX1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
EPHX1 MUTATED	2	0	2
EPHX1 WILD-TYPE	38	25	17

'EPHX1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0263 (Fisher's exact test), Q value = 1

Table S3387. Gene #424: 'EPHX1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
EPHX1 MUTATED	1	2	1
EPHX1 WILD-TYPE	0	29	51

Figure S272. Get High-res Image Gene #424: 'EPHX1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'EPHX1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.816 (Fisher's exact test), Q value = 1

Table S3388. Gene #424: 'EPHX1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
EPHX1 MUTATED	1	1	0	2
EPHX1 WILD-TYPE	30	19	11	20

'EPHX1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.315 (Fisher's exact test), Q value = 1

Table S3389. Gene #424: 'EPHX1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
EPHX1 MUTATED	1	2	1
EPHX1 WILD-TYPE	36	14	30

'EPHX1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.811 (Fisher's exact test), Q value = 1

Table S3390. Gene #424: 'EPHX1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
EPHX1 MUTATED	1	1	2
EPHX1 WILD-TYPE	37	19	24

'EPHX1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.436 (Fisher's exact test), Q value = 1

Table S3391. Gene #424: 'EPHX1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
EPHX1 MUTATED	1	2	1
EPHX1 WILD-TYPE	26	17	37

'ZACN MUTATION STATUS' versus 'CN_CNMF'

P value = 0.798 (Fisher's exact test), Q value = 1

Table S3392. Gene #425: 'ZACN MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
ZACN MUTATED	1	1	1
ZACN WILD-TYPE	23	44	20

'ZACN MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.621 (Fisher's exact test), Q value = 1

Table S3393. Gene #425: 'ZACN MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
ZACN MUTATED	2	1	0
ZACN WILD-TYPE	29	34	24

'ZACN MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.211 (Fisher's exact test), Q value = 1

Table S3394. Gene #425: 'ZACN MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
ZACN MUTATED	1	0	2
ZACN WILD-TYPE	39	25	17

'ZACN MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S3395. Gene #425: 'ZACN MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
ZACN MUTATED	0	1	2
ZACN WILD-TYPE	1	30	50

'ZACN MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.573 (Fisher's exact test), Q value = 1

Table S3396. Gene #425: 'ZACN MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
ZACN MUTATED	1	0	0	2
ZACN WILD-TYPE	30	20	11	20

'ZACN MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.41 (Fisher's exact test), Q value = 1

Table S3397. Gene #425: 'ZACN MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
ZACN MUTATED	2	1	0
ZACN WILD-TYPE	35	15	31

'ZACN MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.453 (Fisher's exact test), Q value = 1

Table S3398. Gene #425: 'ZACN MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
ZACN MUTATED	1	0	2
ZACN WILD-TYPE	37	20	24

'ZACN MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.596 (Fisher's exact test), Q value = 1

Table S3399. Gene #425: 'ZACN MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
ZACN MUTATED	0	1	2
ZACN WILD-TYPE	27	18	36

'ZNF878 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.224 (Fisher's exact test), Q value = 1

Table S3400. Gene #426: 'ZNF878 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
ZNF878 MUTATED	3	2	0
ZNF878 WILD-TYPE	21	43	21

'ZNF878 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.622 (Fisher's exact test), Q value = 1

Table S3401. Gene #426: 'ZNF878 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
ZNF878 MUTATED	2	1	2
ZNF878 WILD-TYPE	29	34	22

'ZNF878 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S3402. Gene #426: 'ZNF878 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
ZNF878 MUTATED	3	1	1
ZNF878 WILD-TYPE	37	24	18

'ZNF878 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.065 (Fisher's exact test), Q value = 1

Table S3403. Gene #426: 'ZNF878 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
ZNF878 MUTATED	1	1	3
ZNF878 WILD-TYPE	0	30	49

'ZNF878 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.793 (Fisher's exact test), Q value = 1

Table S3404. Gene #426: 'ZNF878 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
ZNF878 MUTATED	2	2	0	1
ZNF878 WILD-TYPE	29	18	11	21

'ZNF878 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S3405. Gene #426: 'ZNF878 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
ZNF878 MUTATED	2	1	2
ZNF878 WILD-TYPE	35	15	29

'ZNF878 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.71 (Fisher's exact test), Q value = 1

Table S3406. Gene #426: 'ZNF878 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
ZNF878 MUTATED	2	2	1
ZNF878 WILD-TYPE	36	18	25

'ZNF878 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S3407. Gene #426: 'ZNF878 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
ZNF878 MUTATED	2	1	2
ZNF878 WILD-TYPE	25	18	36

'KLC3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.428 (Fisher's exact test), Q value = 1

Table S3408. Gene #427: 'KLC3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
KLC3 MUTATED	0	3	0
KLC3 WILD-TYPE	24	42	21

'KLC3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.266 (Fisher's exact test), Q value = 1

Table S3409. Gene #427: 'KLC3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
KLC3 MUTATED	0	1	2
KLC3 WILD-TYPE	31	34	22

'KLC3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0102 (Fisher's exact test), Q value = 1

Table S3410. Gene #427: 'KLC3 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
KLC3 MUTATED	0	0	3
KLC3 WILD-TYPE	40	25	16

Figure S273. Get High-res Image Gene #427: 'KLC3 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

'KLC3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0829 (Fisher's exact test), Q value = 1

Table S3411. Gene #427: 'KLC3 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
KLC3 MUTATED	0	3	0
KLC3 WILD-TYPE	1	28	52

'KLC3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0379 (Fisher's exact test), Q value = 1

Table S3412. Gene #427: 'KLC3 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
KLC3 MUTATED	0	0	2	1
KLC3 WILD-TYPE	31	20	9	21

Figure S274. Get High-res Image Gene #427: 'KLC3 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

'KLC3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00588 (Fisher's exact test), Q value = 1

Table S3413. Gene #427: 'KLC3 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
KLC3 MUTATED	0	3	0
KLC3 WILD-TYPE	37	13	31

Figure S275. Get High-res Image Gene #427: 'KLC3 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'KLC3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0393 (Fisher's exact test), Q value = 1

Table S3414. Gene #427: 'KLC3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
KLC3 MUTATED	0	0	3
KLC3 WILD-TYPE	38	20	23

Figure S276. Get High-res Image Gene #427: 'KLC3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

'KLC3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0102 (Fisher's exact test), Q value = 1

Table S3415. Gene #427: 'KLC3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
KLC3 MUTATED	0	3	0
KLC3 WILD-TYPE	27	16	38

Figure S277. Get High-res Image Gene #427: 'KLC3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

'PPIG MUTATION STATUS' versus 'CN_CNMF'

P value = 0.428 (Fisher's exact test), Q value = 1

Table S3416. Gene #428: 'PPIG MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
PPIG MUTATED	0	3	0
PPIG WILD-TYPE	24	42	21

'PPIG MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S3417. Gene #428: 'PPIG MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
PPIG MUTATED	1	1	1
PPIG WILD-TYPE	30	34	23

'PSMB4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.671 (Fisher's exact test), Q value = 1

Table S3418. Gene #429: 'PSMB4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
PSMB4 MUTATED	0	3	1
PSMB4 WILD-TYPE	24	42	20

'PSMB4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S3419. Gene #429: 'PSMB4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
PSMB4 MUTATED	1	2	1
PSMB4 WILD-TYPE	30	33	23

'PSMB4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S3420. Gene #429: 'PSMB4 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
PSMB4 MUTATED	2	1	1
PSMB4 WILD-TYPE	38	24	18

'PSMB4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.645 (Fisher's exact test), Q value = 1

Table S3421. Gene #429: 'PSMB4 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
PSMB4 MUTATED	0	2	2
PSMB4 WILD-TYPE	1	29	50

'PSMB4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.561 (Fisher's exact test), Q value = 1

Table S3422. Gene #429: 'PSMB4 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
PSMB4 MUTATED	2	1	1	0
PSMB4 WILD-TYPE	29	19	10	22

'PSMB4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S3423. Gene #429: 'PSMB4 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
PSMB4 MUTATED	2	1	1
PSMB4 WILD-TYPE	35	15	30

'PSMB4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S3424. Gene #429: 'PSMB4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
PSMB4 MUTATED	2	1	1
PSMB4 WILD-TYPE	36	19	25

'PSMB4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.554 (Fisher's exact test), Q value = 1

Table S3425. Gene #429: 'PSMB4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
PSMB4 MUTATED	1	0	3
PSMB4 WILD-TYPE	26	19	35

'AFAP1L2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.491 (Fisher's exact test), Q value = 1

Table S3426. Gene #430: 'AFAP1L2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
AFAP1L2 MUTATED	1	4	3
AFAP1L2 WILD-TYPE	23	41	18

'AFAP1L2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.809 (Fisher's exact test), Q value = 1

Table S3427. Gene #430: 'AFAP1L2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
AFAP1L2 MUTATED	2	3	3
AFAP1L2 WILD-TYPE	29	32	21

'AFAP1L2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.182 (Fisher's exact test), Q value = 1

Table S3428. Gene #430: 'AFAP1L2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
AFAP1L2 MUTATED	3	1	4
AFAP1L2 WILD-TYPE	37	24	15

'AFAP1L2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0429 (Fisher's exact test), Q value = 1

Table S3429. Gene #430: 'AFAP1L2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
AFAP1L2 MUTATED	1	4	3
AFAP1L2 WILD-TYPE	0	27	49

Figure S278. Get High-res Image Gene #430: 'AFAP1L2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'AFAP1L2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.637 (Fisher's exact test), Q value = 1

Table S3430. Gene #430: 'AFAP1L2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
AFAP1L2 MUTATED	2	2	2	2
AFAP1L2 WILD-TYPE	29	18	9	20

'AFAP1L2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.441 (Fisher's exact test), Q value = 1

Table S3431. Gene #430: 'AFAP1L2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
AFAP1L2 MUTATED	3	3	2
AFAP1L2 WILD-TYPE	34	13	29

'AFAP1L2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.353 (Fisher's exact test), Q value = 1

Table S3432. Gene #430: 'AFAP1L2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
AFAP1L2 MUTATED	2	2	4
AFAP1L2 WILD-TYPE	36	18	22

'AFAP1L2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.631 (Fisher's exact test), Q value = 1

Table S3433. Gene #430: 'AFAP1L2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
AFAP1L2 MUTATED	2	3	3
AFAP1L2 WILD-TYPE	25	16	35

'RBBP8 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.122 (Fisher's exact test), Q value = 1

Table S3434. Gene #431: 'RBBP8 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
RBBP8 MUTATED	4	4	0
RBBP8 WILD-TYPE	20	41	21

'RBBP8 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S3435. Gene #431: 'RBBP8 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
RBBP8 MUTATED	3	3	2
RBBP8 WILD-TYPE	28	32	22

'RBBP8 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S3436. Gene #431: 'RBBP8 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
RBBP8 MUTATED	4	2	1
RBBP8 WILD-TYPE	36	23	18

'RBBP8 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0646 (Fisher's exact test), Q value = 1

Table S3437. Gene #431: 'RBBP8 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
RBBP8 MUTATED	1	3	3
RBBP8 WILD-TYPE	0	28	49

'RBBP8 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.539 (Fisher's exact test), Q value = 1

Table S3438. Gene #431: 'RBBP8 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
RBBP8 MUTATED	3	3	0	1
RBBP8 WILD-TYPE	28	17	11	21

'RBBP8 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S3439. Gene #431: 'RBBP8 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
RBBP8 MUTATED	3	1	3
RBBP8 WILD-TYPE	34	15	28

'RBBP8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S3440. Gene #431: 'RBBP8 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
RBBP8 MUTATED	3	2	2
RBBP8 WILD-TYPE	35	18	24

'RBBP8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.78 (Fisher's exact test), Q value = 1

Table S3441. Gene #431: 'RBBP8 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
RBBP8 MUTATED	3	1	3
RBBP8 WILD-TYPE	24	18	35

'MAMLD1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.797 (Fisher's exact test), Q value = 1

Table S3442. Gene #432: 'MAMLD1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
MAMLD1 MUTATED	3	4	1
MAMLD1 WILD-TYPE	21	41	20

'MAMLD1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.162 (Fisher's exact test), Q value = 1

Table S3443. Gene #432: 'MAMLD1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
MAMLD1 MUTATED	5	1	2
MAMLD1 WILD-TYPE	26	34	22

'MAMLD1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.712 (Fisher's exact test), Q value = 1

Table S3444. Gene #432: 'MAMLD1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
MAMLD1 MUTATED	5	2	1
MAMLD1 WILD-TYPE	35	23	18

'MAMLD1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.027 (Fisher's exact test), Q value = 1

Table S3445. Gene #432: 'MAMLD1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
MAMLD1 MUTATED	1	1	6
MAMLD1 WILD-TYPE	0	30	46

Figure S279. Get High-res Image Gene #432: 'MAMLD1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'MAMLD1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.811 (Fisher's exact test), Q value = 1

Table S3446. Gene #432: 'MAMLD1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
MAMLD1 MUTATED	4	2	0	2
MAMLD1 WILD-TYPE	27	18	11	20

'MAMLD1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.489 (Fisher's exact test), Q value = 1

Table S3447. Gene #432: 'MAMLD1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
MAMLD1 MUTATED	4	0	4
MAMLD1 WILD-TYPE	33	16	27

'MAMLD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.451 (Fisher's exact test), Q value = 1

Table S3448. Gene #432: 'MAMLD1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
MAMLD1 MUTATED	4	3	1
MAMLD1 WILD-TYPE	34	17	25

'MAMLD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.309 (Fisher's exact test), Q value = 1

Table S3449. Gene #432: 'MAMLD1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
MAMLD1 MUTATED	3	0	5
MAMLD1 WILD-TYPE	24	19	33

'FOXN2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.798 (Fisher's exact test), Q value = 1

Table S3450. Gene #433: 'FOXN2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
FOXN2 MUTATED	1	1	1
FOXN2 WILD-TYPE	23	44	20

'FOXN2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.621 (Fisher's exact test), Q value = 1

Table S3451. Gene #433: 'FOXN2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
FOXN2 MUTATED	2	1	0
FOXN2 WILD-TYPE	29	34	24

'FOXN2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.596 (Fisher's exact test), Q value = 1

Table S3452. Gene #433: 'FOXN2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
FOXN2 MUTATED	2	0	1
FOXN2 WILD-TYPE	38	25	18

'FOXN2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S3453. Gene #433: 'FOXN2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
FOXN2 MUTATED	0	1	2
FOXN2 WILD-TYPE	1	30	50

'FOXN2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.498 (Fisher's exact test), Q value = 1

Table S3454. Gene #433: 'FOXN2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
FOXN2 MUTATED	1	1	1	0
FOXN2 WILD-TYPE	30	19	10	22

'FOXN2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.783 (Fisher's exact test), Q value = 1

Table S3455. Gene #433: 'FOXN2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
FOXN2 MUTATED	1	1	1
FOXN2 WILD-TYPE	36	15	30

'FOXN2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S3456. Gene #433: 'FOXN2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
FOXN2 MUTATED	1	1	1
FOXN2 WILD-TYPE	37	19	25

'FOXN2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S3457. Gene #433: 'FOXN2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
FOXN2 MUTATED	1	1	1
FOXN2 WILD-TYPE	26	18	37

'PRF1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.212 (Fisher's exact test), Q value = 1

Table S3458. Gene #434: 'PRF1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
PRF1 MUTATED	0	5	1
PRF1 WILD-TYPE	24	40	20

'PRF1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.657 (Fisher's exact test), Q value = 1

Table S3459. Gene #434: 'PRF1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
PRF1 MUTATED	1	3	2
PRF1 WILD-TYPE	30	32	22

'PRF1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S3460. Gene #434: 'PRF1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
PRF1 MUTATED	2	1	1
PRF1 WILD-TYPE	38	24	18

'PRF1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0263 (Fisher's exact test), Q value = 1

Table S3461. Gene #434: 'PRF1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
PRF1 MUTATED	1	2	1
PRF1 WILD-TYPE	0	29	51

Figure S280. Get High-res Image Gene #434: 'PRF1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'PRF1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.213 (Fisher's exact test), Q value = 1

Table S3462. Gene #434: 'PRF1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
PRF1 MUTATED	0	2	1	1
PRF1 WILD-TYPE	31	18	10	21

'PRF1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.668 (Fisher's exact test), Q value = 1

Table S3463. Gene #434: 'PRF1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
PRF1 MUTATED	1	1	2
PRF1 WILD-TYPE	36	15	29

'PRF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.107 (Fisher's exact test), Q value = 1

Table S3464. Gene #434: 'PRF1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
PRF1 MUTATED	0	2	2
PRF1 WILD-TYPE	38	18	24

'PRF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.104 (Fisher's exact test), Q value = 1

Table S3465. Gene #434: 'PRF1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
PRF1 MUTATED	2	2	0
PRF1 WILD-TYPE	25	17	38

'KIAA0100 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.889 (Fisher's exact test), Q value = 1

Table S3466. Gene #435: 'KIAA0100 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
KIAA0100 MUTATED	2	5	1
KIAA0100 WILD-TYPE	22	40	20

'KIAA0100 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0925 (Fisher's exact test), Q value = 1

Table S3467. Gene #435: 'KIAA0100 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
KIAA0100 MUTATED	1	2	5
KIAA0100 WILD-TYPE	30	33	19

'KIAA0100 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.348 (Fisher's exact test), Q value = 1

Table S3468. Gene #435: 'KIAA0100 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
KIAA0100 MUTATED	2	3	3
KIAA0100 WILD-TYPE	38	22	16

'KIAA0100 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.138 (Fisher's exact test), Q value = 1

Table S3469. Gene #435: 'KIAA0100 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
KIAA0100 MUTATED	1	3	4
KIAA0100 WILD-TYPE	0	28	48

'KIAA0100 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.327 (Fisher's exact test), Q value = 1

Table S3470. Gene #435: 'KIAA0100 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
KIAA0100 MUTATED	1	2	2	3
KIAA0100 WILD-TYPE	30	18	9	19

'KIAA0100 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.546 (Fisher's exact test), Q value = 1

Table S3471. Gene #435: 'KIAA0100 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
KIAA0100 MUTATED	2	2	4
KIAA0100 WILD-TYPE	35	14	27

'KIAA0100 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.127 (Fisher's exact test), Q value = 1

Table S3472. Gene #435: 'KIAA0100 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
KIAA0100 MUTATED	1	3	4
KIAA0100 WILD-TYPE	37	17	22

'KIAA0100 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.447 (Fisher's exact test), Q value = 1

Table S3473. Gene #435: 'KIAA0100 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
KIAA0100 MUTATED	4	2	2
KIAA0100 WILD-TYPE	23	17	36

'MYO9B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.558 (Fisher's exact test), Q value = 1

Table S3474. Gene #436: 'MYO9B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
MYO9B MUTATED	2	3	3
MYO9B WILD-TYPE	22	42	18

'MYO9B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S3475. Gene #436: 'MYO9B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
MYO9B MUTATED	3	3	2
MYO9B WILD-TYPE	28	32	22

'MYO9B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.712 (Fisher's exact test), Q value = 1

Table S3476. Gene #436: 'MYO9B MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
MYO9B MUTATED	5	2	1
MYO9B WILD-TYPE	35	23	18

'MYO9B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.138 (Fisher's exact test), Q value = 1

Table S3477. Gene #436: 'MYO9B MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
MYO9B MUTATED	1	3	4
MYO9B WILD-TYPE	0	28	48

'MYO9B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.811 (Fisher's exact test), Q value = 1

Table S3478. Gene #436: 'MYO9B MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
MYO9B MUTATED	4	2	0	2
MYO9B WILD-TYPE	27	18	11	20

'MYO9B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S3479. Gene #436: 'MYO9B MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
MYO9B MUTATED	4	1	3
MYO9B WILD-TYPE	33	15	28

'MYO9B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S3480. Gene #436: 'MYO9B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
MYO9B MUTATED	4	2	2
MYO9B WILD-TYPE	34	18	24

'MYO9B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.802 (Fisher's exact test), Q value = 1

Table S3481. Gene #436: 'MYO9B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
MYO9B MUTATED	3	1	4
MYO9B WILD-TYPE	24	18	34

'GABRD MUTATION STATUS' versus 'CN_CNMF'

P value = 0.176 (Fisher's exact test), Q value = 1

Table S3482. Gene #437: 'GABRD MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
GABRD MUTATED	0	4	0
GABRD WILD-TYPE	24	41	21

'GABRD MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.849 (Fisher's exact test), Q value = 1

Table S3483. Gene #437: 'GABRD MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
GABRD MUTATED	1	2	2
GABRD WILD-TYPE	30	33	22

'GABRD MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.596 (Fisher's exact test), Q value = 1

Table S3484. Gene #437: 'GABRD MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
GABRD MUTATED	3	2	0
GABRD WILD-TYPE	37	23	19

'GABRD MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.065 (Fisher's exact test), Q value = 1

Table S3485. Gene #437: 'GABRD MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
GABRD MUTATED	1	1	3
GABRD WILD-TYPE	0	30	49

'GABRD MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.793 (Fisher's exact test), Q value = 1

Table S3486. Gene #437: 'GABRD MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
GABRD MUTATED	2	2	0	1
GABRD WILD-TYPE	29	18	11	21

'GABRD MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.201 (Fisher's exact test), Q value = 1

Table S3487. Gene #437: 'GABRD MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
GABRD MUTATED	1	0	4
GABRD WILD-TYPE	36	16	27

'GABRD MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.111 (Fisher's exact test), Q value = 1

Table S3488. Gene #437: 'GABRD MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
GABRD MUTATED	2	3	0
GABRD WILD-TYPE	36	17	26

'GABRD MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.365 (Fisher's exact test), Q value = 1

Table S3489. Gene #437: 'GABRD MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
GABRD MUTATED	3	0	2
GABRD WILD-TYPE	24	19	36

'SLC4A5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.194 (Fisher's exact test), Q value = 1

Table S3490. Gene #438: 'SLC4A5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
SLC4A5 MUTATED	4	5	0
SLC4A5 WILD-TYPE	20	40	21

'SLC4A5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.614 (Fisher's exact test), Q value = 1

Table S3491. Gene #438: 'SLC4A5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
SLC4A5 MUTATED	4	4	1
SLC4A5 WILD-TYPE	27	31	23

'SLC4A5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.251 (Fisher's exact test), Q value = 1

Table S3492. Gene #438: 'SLC4A5 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
SLC4A5 MUTATED	4	1	4
SLC4A5 WILD-TYPE	36	24	15

'SLC4A5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0703 (Fisher's exact test), Q value = 1

Table S3493. Gene #438: 'SLC4A5 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
SLC4A5 MUTATED	1	4	4
SLC4A5 WILD-TYPE	0	27	48

'SLC4A5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.581 (Fisher's exact test), Q value = 1

Table S3494. Gene #438: 'SLC4A5 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
SLC4A5 MUTATED	4	2	2	1
SLC4A5 WILD-TYPE	27	18	9	21

'SLC4A5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.728 (Fisher's exact test), Q value = 1

Table S3495. Gene #438: 'SLC4A5 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
SLC4A5 MUTATED	3	2	4
SLC4A5 WILD-TYPE	34	14	27

'SLC4A5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S3496. Gene #438: 'SLC4A5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
SLC4A5 MUTATED	4	2	3
SLC4A5 WILD-TYPE	34	18	23

'SLC4A5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.742 (Fisher's exact test), Q value = 1

Table S3497. Gene #438: 'SLC4A5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
SLC4A5 MUTATED	4	2	3
SLC4A5 WILD-TYPE	23	17	35

'XYLT2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.176 (Fisher's exact test), Q value = 1

Table S3498. Gene #439: 'XYLT2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
XYLT2 MUTATED	0	4	0
XYLT2 WILD-TYPE	24	41	21

'XYLT2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.369 (Fisher's exact test), Q value = 1

Table S3499. Gene #439: 'XYLT2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
XYLT2 MUTATED	0	2	2
XYLT2 WILD-TYPE	31	33	22

'XYLT2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.559 (Fisher's exact test), Q value = 1

Table S3500. Gene #439: 'XYLT2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
XYLT2 MUTATED	1	2	1
XYLT2 WILD-TYPE	39	23	18

'XYLT2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00233 (Fisher's exact test), Q value = 1

Table S3501. Gene #439: 'XYLT2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
XYLT2 MUTATED	1	3	0
XYLT2 WILD-TYPE	0	28	52

Figure S281. Get High-res Image Gene #439: 'XYLT2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'XYLT2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0655 (Fisher's exact test), Q value = 1

Table S3502. Gene #439: 'XYLT2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
XYLT2 MUTATED	0	3	0	1
XYLT2 WILD-TYPE	31	17	11	21

'XYLT2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.137 (Fisher's exact test), Q value = 1

Table S3503. Gene #439: 'XYLT2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
XYLT2 MUTATED	0	1	3
XYLT2 WILD-TYPE	37	15	28

'XYLT2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0256 (Fisher's exact test), Q value = 1

Table S3504. Gene #439: 'XYLT2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
XYLT2 MUTATED	0	3	1
XYLT2 WILD-TYPE	38	17	25

Figure S282. Get High-res Image Gene #439: 'XYLT2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

'XYLT2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0726 (Fisher's exact test), Q value = 1

Table S3505. Gene #439: 'XYLT2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
XYLT2 MUTATED	3	1	0
XYLT2 WILD-TYPE	24	18	38

'RIT1 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S3506. Gene #440: 'RIT1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
RIT1 MUTATED	1	2	0
RIT1 WILD-TYPE	23	43	21

'RIT1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S3507. Gene #440: 'RIT1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
RIT1 MUTATED	1	1	1
RIT1 WILD-TYPE	30	34	23

'RIT1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.795 (Fisher's exact test), Q value = 1

Table S3508. Gene #440: 'RIT1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
RIT1 MUTATED	1	1	1
RIT1 WILD-TYPE	39	24	18

'RIT1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S3509. Gene #440: 'RIT1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
RIT1 MUTATED	0	1	2
RIT1 WILD-TYPE	1	30	50

'RIT1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S3510. Gene #440: 'RIT1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
RIT1 MUTATED	1	1	0	1
RIT1 WILD-TYPE	30	19	11	21

'RIT1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.783 (Fisher's exact test), Q value = 1

Table S3511. Gene #440: 'RIT1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
RIT1 MUTATED	1	1	1
RIT1 WILD-TYPE	36	15	30

'RIT1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S3512. Gene #440: 'RIT1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
RIT1 MUTATED	1	1	1
RIT1 WILD-TYPE	37	19	25

'RIT1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S3513. Gene #440: 'RIT1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
RIT1 MUTATED	1	1	1
RIT1 WILD-TYPE	26	18	37

'HSP90AA1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.868 (Fisher's exact test), Q value = 1

Table S3514. Gene #441: 'HSP90AA1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
HSP90AA1 MUTATED	1	4	1
HSP90AA1 WILD-TYPE	23	41	20

'HSP90AA1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.435 (Fisher's exact test), Q value = 1

Table S3515. Gene #441: 'HSP90AA1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
HSP90AA1 MUTATED	1	2	3
HSP90AA1 WILD-TYPE	30	33	21

'HSP90AA1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S3516. Gene #441: 'HSP90AA1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
HSP90AA1 MUTATED	3	2	1
HSP90AA1 WILD-TYPE	37	23	18

'HSP90AA1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.095 (Fisher's exact test), Q value = 1

Table S3517. Gene #441: 'HSP90AA1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
HSP90AA1 MUTATED	1	2	3
HSP90AA1 WILD-TYPE	0	29	49

'HSP90AA1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.229 (Fisher's exact test), Q value = 1

Table S3518. Gene #441: 'HSP90AA1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
HSP90AA1 MUTATED	2	3	1	0
HSP90AA1 WILD-TYPE	29	17	10	22

'HSP90AA1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.858 (Fisher's exact test), Q value = 1

Table S3519. Gene #441: 'HSP90AA1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
HSP90AA1 MUTATED	2	1	3
HSP90AA1 WILD-TYPE	35	15	28

'HSP90AA1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.358 (Fisher's exact test), Q value = 1

Table S3520. Gene #441: 'HSP90AA1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
HSP90AA1 MUTATED	2	3	1
HSP90AA1 WILD-TYPE	36	17	25

'HSP90AA1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.758 (Fisher's exact test), Q value = 1

Table S3521. Gene #441: 'HSP90AA1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
HSP90AA1 MUTATED	3	1	2
HSP90AA1 WILD-TYPE	24	18	36

'STK10 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.284 (Fisher's exact test), Q value = 1

Table S3522. Gene #442: 'STK10 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
STK10 MUTATED	2	1	2
STK10 WILD-TYPE	22	44	19

'STK10 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.147 (Fisher's exact test), Q value = 1

Table S3523. Gene #442: 'STK10 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
STK10 MUTATED	3	0	2
STK10 WILD-TYPE	28	35	22

'STK10 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.245 (Fisher's exact test), Q value = 1

Table S3524. Gene #442: 'STK10 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
STK10 MUTATED	4	0	1
STK10 WILD-TYPE	36	25	18

'STK10 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.065 (Fisher's exact test), Q value = 1

Table S3525. Gene #442: 'STK10 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
STK10 MUTATED	1	1	3
STK10 WILD-TYPE	0	30	49

'STK10 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.482 (Fisher's exact test), Q value = 1

Table S3526. Gene #442: 'STK10 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
STK10 MUTATED	3	1	1	0
STK10 WILD-TYPE	28	19	10	22

'STK10 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.839 (Fisher's exact test), Q value = 1

Table S3527. Gene #442: 'STK10 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
STK10 MUTATED	3	1	1
STK10 WILD-TYPE	34	15	30

'STK10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.852 (Fisher's exact test), Q value = 1

Table S3528. Gene #442: 'STK10 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
STK10 MUTATED	3	1	1
STK10 WILD-TYPE	35	19	25

'STK10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.848 (Fisher's exact test), Q value = 1

Table S3529. Gene #442: 'STK10 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
STK10 MUTATED	1	1	3
STK10 WILD-TYPE	26	18	35

'MTMR3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.707 (Fisher's exact test), Q value = 1

Table S3530. Gene #443: 'MTMR3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
MTMR3 MUTATED	1	2	2
MTMR3 WILD-TYPE	23	43	19

'MTMR3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.849 (Fisher's exact test), Q value = 1

Table S3531. Gene #443: 'MTMR3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
MTMR3 MUTATED	1	2	2
MTMR3 WILD-TYPE	30	33	22

'MTMR3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.704 (Fisher's exact test), Q value = 1

Table S3532. Gene #443: 'MTMR3 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
MTMR3 MUTATED	2	1	2
MTMR3 WILD-TYPE	38	24	17

'MTMR3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.667 (Fisher's exact test), Q value = 1

Table S3533. Gene #443: 'MTMR3 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
MTMR3 MUTATED	0	1	4
MTMR3 WILD-TYPE	1	30	48

'MTMR3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.209 (Fisher's exact test), Q value = 1

Table S3534. Gene #443: 'MTMR3 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
MTMR3 MUTATED	1	0	1	3
MTMR3 WILD-TYPE	30	20	10	19

'MTMR3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.839 (Fisher's exact test), Q value = 1

Table S3535. Gene #443: 'MTMR3 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
MTMR3 MUTATED	3	1	1
MTMR3 WILD-TYPE	34	15	30

'MTMR3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.433 (Fisher's exact test), Q value = 1

Table S3536. Gene #443: 'MTMR3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
MTMR3 MUTATED	1	1	3
MTMR3 WILD-TYPE	37	19	23

'MTMR3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.848 (Fisher's exact test), Q value = 1

Table S3537. Gene #443: 'MTMR3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
MTMR3 MUTATED	1	1	3
MTMR3 WILD-TYPE	26	18	35

'CD3EAP MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0715 (Fisher's exact test), Q value = 1

Table S3538. Gene #444: 'CD3EAP MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
CD3EAP MUTATED	1	0	2
CD3EAP WILD-TYPE	23	45	19

'CD3EAP MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0172 (Fisher's exact test), Q value = 1

Table S3539. Gene #444: 'CD3EAP MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
CD3EAP MUTATED	0	0	3
CD3EAP WILD-TYPE	31	35	21

Figure S283. Get High-res Image Gene #444: 'CD3EAP MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'CD3EAP MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S3540. Gene #444: 'CD3EAP MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
CD3EAP MUTATED	2	1	0
CD3EAP WILD-TYPE	38	24	19

'CD3EAP MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.315 (Fisher's exact test), Q value = 1

Table S3541. Gene #444: 'CD3EAP MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
CD3EAP MUTATED	0	0	3
CD3EAP WILD-TYPE	1	31	49

'CD3EAP MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.212 (Fisher's exact test), Q value = 1

Table S3542. Gene #444: 'CD3EAP MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
CD3EAP MUTATED	3	0	0	0
CD3EAP WILD-TYPE	28	20	11	22

'CD3EAP MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S3543. Gene #444: 'CD3EAP MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
CD3EAP MUTATED	2	0	1
CD3EAP WILD-TYPE	35	16	30

'CD3EAP MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.324 (Fisher's exact test), Q value = 1

Table S3544. Gene #444: 'CD3EAP MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
CD3EAP MUTATED	3	0	0
CD3EAP WILD-TYPE	35	20	26

'CD3EAP MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.795 (Fisher's exact test), Q value = 1

Table S3545. Gene #444: 'CD3EAP MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
CD3EAP MUTATED	1	0	2
CD3EAP WILD-TYPE	26	19	36

'CSF1R MUTATION STATUS' versus 'CN_CNMF'

P value = 0.671 (Fisher's exact test), Q value = 1

Table S3546. Gene #445: 'CSF1R MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
CSF1R MUTATED	0	3	1
CSF1R WILD-TYPE	24	42	20

'CSF1R MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0892 (Fisher's exact test), Q value = 1

Table S3547. Gene #445: 'CSF1R MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
CSF1R MUTATED	0	1	3
CSF1R WILD-TYPE	31	34	21

'CSF1R MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.255 (Fisher's exact test), Q value = 1

Table S3548. Gene #445: 'CSF1R MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
CSF1R MUTATED	2	0	2
CSF1R WILD-TYPE	38	25	17

'CSF1R MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0639 (Fisher's exact test), Q value = 1

Table S3549. Gene #445: 'CSF1R MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
CSF1R MUTATED	1	1	2
CSF1R WILD-TYPE	0	30	50

'CSF1R MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.29 (Fisher's exact test), Q value = 1

Table S3550. Gene #445: 'CSF1R MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
CSF1R MUTATED	0	1	1	2
CSF1R WILD-TYPE	31	19	10	20

'CSF1R MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S3551. Gene #445: 'CSF1R MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
CSF1R MUTATED	2	1	1
CSF1R WILD-TYPE	35	15	30

'CSF1R MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.811 (Fisher's exact test), Q value = 1

Table S3552. Gene #445: 'CSF1R MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
CSF1R MUTATED	1	1	2
CSF1R WILD-TYPE	37	19	24

'CSF1R MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S3553. Gene #445: 'CSF1R MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
CSF1R MUTATED	1	1	2
CSF1R WILD-TYPE	26	18	36

'PARVB MUTATION STATUS' versus 'CN_CNMF'

P value = 0.307 (Fisher's exact test), Q value = 1

Table S3554. Gene #446: 'PARVB MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
PARVB MUTATED	2	1	0
PARVB WILD-TYPE	22	44	21

'RASSF2 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S3555. Gene #447: 'RASSF2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
RASSF2 MUTATED	1	2	1
RASSF2 WILD-TYPE	23	43	20

'RASSF2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.674 (Fisher's exact test), Q value = 1

Table S3556. Gene #447: 'RASSF2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
RASSF2 MUTATED	1	1	2
RASSF2 WILD-TYPE	30	34	22

'RASSF2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.343 (Fisher's exact test), Q value = 1

Table S3557. Gene #447: 'RASSF2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
RASSF2 MUTATED	1	1	2
RASSF2 WILD-TYPE	39	24	17

'RASSF2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.185 (Fisher's exact test), Q value = 1

Table S3558. Gene #447: 'RASSF2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
RASSF2 MUTATED	0	3	1
RASSF2 WILD-TYPE	1	28	51

'RASSF2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.742 (Fisher's exact test), Q value = 1

Table S3559. Gene #447: 'RASSF2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
RASSF2 MUTATED	1	2	0	1
RASSF2 WILD-TYPE	30	18	11	21

'RASSF2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.668 (Fisher's exact test), Q value = 1

Table S3560. Gene #447: 'RASSF2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
RASSF2 MUTATED	1	1	2
RASSF2 WILD-TYPE	36	15	29

'RASSF2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.45 (Fisher's exact test), Q value = 1

Table S3561. Gene #447: 'RASSF2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
RASSF2 MUTATED	1	2	1
RASSF2 WILD-TYPE	37	18	25

'RASSF2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.813 (Fisher's exact test), Q value = 1

Table S3562. Gene #447: 'RASSF2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
RASSF2 MUTATED	2	1	1
RASSF2 WILD-TYPE	25	18	37

'SV2A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.555 (Fisher's exact test), Q value = 1

Table S3563. Gene #448: 'SV2A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
SV2A MUTATED	2	2	0
SV2A WILD-TYPE	22	43	21

'SV2A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S3564. Gene #448: 'SV2A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
SV2A MUTATED	1	2	1
SV2A WILD-TYPE	30	33	23

'SV2A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S3565. Gene #448: 'SV2A MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
SV2A MUTATED	2	1	1
SV2A WILD-TYPE	38	24	18

'SV2A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.645 (Fisher's exact test), Q value = 1

Table S3566. Gene #448: 'SV2A MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
SV2A MUTATED	0	2	2
SV2A WILD-TYPE	1	29	50

'SV2A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.561 (Fisher's exact test), Q value = 1

Table S3567. Gene #448: 'SV2A MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
SV2A MUTATED	2	1	1	0
SV2A WILD-TYPE	29	19	10	22

'SV2A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S3568. Gene #448: 'SV2A MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
SV2A MUTATED	2	1	1
SV2A WILD-TYPE	35	15	30

'SV2A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S3569. Gene #448: 'SV2A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
SV2A MUTATED	2	1	1
SV2A WILD-TYPE	36	19	25

'SV2A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S3570. Gene #448: 'SV2A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
SV2A MUTATED	1	1	2
SV2A WILD-TYPE	26	18	36

'GNAS MUTATION STATUS' versus 'CN_CNMF'

P value = 0.909 (Fisher's exact test), Q value = 1

Table S3571. Gene #449: 'GNAS MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
GNAS MUTATED	2	6	2
GNAS WILD-TYPE	22	39	19

'GNAS MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.694 (Fisher's exact test), Q value = 1

Table S3572. Gene #449: 'GNAS MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
GNAS MUTATED	3	3	4
GNAS WILD-TYPE	28	32	20

'GNAS MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.25 (Fisher's exact test), Q value = 1

Table S3573. Gene #449: 'GNAS MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
GNAS MUTATED	7	1	2
GNAS WILD-TYPE	33	24	17

'GNAS MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0872 (Fisher's exact test), Q value = 1

Table S3574. Gene #449: 'GNAS MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
GNAS MUTATED	1	2	7
GNAS WILD-TYPE	0	29	45

'GNAS MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.569 (Fisher's exact test), Q value = 1

Table S3575. Gene #449: 'GNAS MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
GNAS MUTATED	5	1	2	2
GNAS WILD-TYPE	26	19	9	20

'GNAS MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.68 (Fisher's exact test), Q value = 1

Table S3576. Gene #449: 'GNAS MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
GNAS MUTATED	6	1	3
GNAS WILD-TYPE	31	15	28

'GNAS MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.688 (Fisher's exact test), Q value = 1

Table S3577. Gene #449: 'GNAS MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
GNAS MUTATED	6	2	2
GNAS WILD-TYPE	32	18	24

'GNAS MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.125 (Fisher's exact test), Q value = 1

Table S3578. Gene #449: 'GNAS MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
GNAS MUTATED	3	0	7
GNAS WILD-TYPE	24	19	31

'HMMR MUTATION STATUS' versus 'CN_CNMF'

P value = 0.473 (Fisher's exact test), Q value = 1

Table S3579. Gene #450: 'HMMR MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
HMMR MUTATED	2	4	0
HMMR WILD-TYPE	22	41	21

'HMMR MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.877 (Fisher's exact test), Q value = 1

Table S3580. Gene #450: 'HMMR MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
HMMR MUTATED	2	3	1
HMMR WILD-TYPE	29	32	23

'HMMR MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.651 (Fisher's exact test), Q value = 1

Table S3581. Gene #450: 'HMMR MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
HMMR MUTATED	2	2	2
HMMR WILD-TYPE	38	23	17

'HMMR MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0273 (Fisher's exact test), Q value = 1

Table S3582. Gene #450: 'HMMR MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
HMMR MUTATED	1	3	2
HMMR WILD-TYPE	0	28	50

Figure S284. Get High-res Image Gene #450: 'HMMR MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'HMMR MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.888 (Fisher's exact test), Q value = 1

Table S3583. Gene #450: 'HMMR MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
HMMR MUTATED	2	2	1	1
HMMR WILD-TYPE	29	18	10	21

'HMMR MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.284 (Fisher's exact test), Q value = 1

Table S3584. Gene #450: 'HMMR MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
HMMR MUTATED	1	2	3
HMMR WILD-TYPE	36	14	28

'HMMR MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.561 (Fisher's exact test), Q value = 1

Table S3585. Gene #450: 'HMMR MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
HMMR MUTATED	2	1	3
HMMR WILD-TYPE	36	19	23

'HMMR MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.862 (Fisher's exact test), Q value = 1

Table S3586. Gene #450: 'HMMR MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
HMMR MUTATED	2	2	2
HMMR WILD-TYPE	25	17	36

'MBD6 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S3587. Gene #451: 'MBD6 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
MBD6 MUTATED	1	2	1
MBD6 WILD-TYPE	23	43	20

'MBD6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.674 (Fisher's exact test), Q value = 1

Table S3588. Gene #451: 'MBD6 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
MBD6 MUTATED	1	1	2
MBD6 WILD-TYPE	30	34	22

'MBD6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S3589. Gene #451: 'MBD6 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
MBD6 MUTATED	2	1	1
MBD6 WILD-TYPE	38	24	18

'MBD6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S3590. Gene #451: 'MBD6 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
MBD6 MUTATED	0	1	3
MBD6 WILD-TYPE	1	30	49

'MBD6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S3591. Gene #451: 'MBD6 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
MBD6 MUTATED	2	1	0	1
MBD6 WILD-TYPE	29	19	11	21

'MBD6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S3592. Gene #451: 'MBD6 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
MBD6 MUTATED	2	1	1
MBD6 WILD-TYPE	35	15	30

'MBD6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S3593. Gene #451: 'MBD6 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
MBD6 MUTATED	2	1	1
MBD6 WILD-TYPE	36	19	25

'MBD6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S3594. Gene #451: 'MBD6 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
MBD6 MUTATED	1	1	2
MBD6 WILD-TYPE	26	18	36

'NDUFAF2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.176 (Fisher's exact test), Q value = 1

Table S3595. Gene #452: 'NDUFAF2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
NDUFAF2 MUTATED	0	4	0
NDUFAF2 WILD-TYPE	24	41	21

'NDUFAF2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S3596. Gene #452: 'NDUFAF2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
NDUFAF2 MUTATED	1	2	1
NDUFAF2 WILD-TYPE	30	33	23

'NDUFAF2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.255 (Fisher's exact test), Q value = 1

Table S3597. Gene #452: 'NDUFAF2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
NDUFAF2 MUTATED	2	0	2
NDUFAF2 WILD-TYPE	38	25	17

'NDUFAF2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.645 (Fisher's exact test), Q value = 1

Table S3598. Gene #452: 'NDUFAF2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
NDUFAF2 MUTATED	0	2	2
NDUFAF2 WILD-TYPE	1	29	50

'NDUFAF2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.04 (Fisher's exact test), Q value = 1

Table S3599. Gene #452: 'NDUFAF2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
NDUFAF2 MUTATED	0	0	1	3
NDUFAF2 WILD-TYPE	31	20	10	19

Figure S285. Get High-res Image Gene #452: 'NDUFAF2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

'NDUFAF2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.315 (Fisher's exact test), Q value = 1

Table S3600. Gene #452: 'NDUFAF2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
NDUFAF2 MUTATED	1	2	1
NDUFAF2 WILD-TYPE	36	14	30

'NDUFAF2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.196 (Fisher's exact test), Q value = 1

Table S3601. Gene #452: 'NDUFAF2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
NDUFAF2 MUTATED	1	0	3
NDUFAF2 WILD-TYPE	37	20	23

'NDUFAF2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0437 (Fisher's exact test), Q value = 1

Table S3602. Gene #452: 'NDUFAF2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
NDUFAF2 MUTATED	0	3	1
NDUFAF2 WILD-TYPE	27	16	37

Figure S286. Get High-res Image Gene #452: 'NDUFAF2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

'STAM MUTATION STATUS' versus 'CN_CNMF'

P value = 0.805 (Fisher's exact test), Q value = 1

Table S3603. Gene #453: 'STAM MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
STAM MUTATED	1	3	0
STAM WILD-TYPE	23	42	21

'STAM MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S3604. Gene #453: 'STAM MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
STAM MUTATED	1	2	1
STAM WILD-TYPE	30	33	23

'STAM MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S3605. Gene #453: 'STAM MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
STAM MUTATED	2	1	1
STAM WILD-TYPE	38	24	18

'STAM MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0263 (Fisher's exact test), Q value = 1

Table S3606. Gene #453: 'STAM MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
STAM MUTATED	1	2	1
STAM WILD-TYPE	0	29	51

Figure S287. Get High-res Image Gene #453: 'STAM MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'STAM MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.323 (Fisher's exact test), Q value = 1

Table S3607. Gene #453: 'STAM MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
STAM MUTATED	1	2	1	0
STAM WILD-TYPE	30	18	10	22

'STAM MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.668 (Fisher's exact test), Q value = 1

Table S3608. Gene #453: 'STAM MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
STAM MUTATED	1	1	2
STAM WILD-TYPE	36	15	29

'STAM MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.45 (Fisher's exact test), Q value = 1

Table S3609. Gene #453: 'STAM MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
STAM MUTATED	1	2	1
STAM WILD-TYPE	37	18	25

'STAM MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.813 (Fisher's exact test), Q value = 1

Table S3610. Gene #453: 'STAM MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
STAM MUTATED	2	1	1
STAM WILD-TYPE	25	18	37

'KIAA1407 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.103 (Fisher's exact test), Q value = 1

Table S3611. Gene #454: 'KIAA1407 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
KIAA1407 MUTATED	0	2	3
KIAA1407 WILD-TYPE	24	43	18

'KIAA1407 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.622 (Fisher's exact test), Q value = 1

Table S3612. Gene #454: 'KIAA1407 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
KIAA1407 MUTATED	2	1	2
KIAA1407 WILD-TYPE	29	34	22

'KIAA1407 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.596 (Fisher's exact test), Q value = 1

Table S3613. Gene #454: 'KIAA1407 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
KIAA1407 MUTATED	3	2	0
KIAA1407 WILD-TYPE	37	23	19

'KIAA1407 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0229 (Fisher's exact test), Q value = 1

Table S3614. Gene #454: 'KIAA1407 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
KIAA1407 MUTATED	1	0	4
KIAA1407 WILD-TYPE	0	31	48

Figure S288. Get High-res Image Gene #454: 'KIAA1407 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'KIAA1407 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0384 (Fisher's exact test), Q value = 1

Table S3615. Gene #454: 'KIAA1407 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
KIAA1407 MUTATED	1	4	0	0
KIAA1407 WILD-TYPE	30	16	11	22

Figure S289. Get High-res Image Gene #454: 'KIAA1407 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

'KIAA1407 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.201 (Fisher's exact test), Q value = 1

Table S3616. Gene #454: 'KIAA1407 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
KIAA1407 MUTATED	1	0	4
KIAA1407 WILD-TYPE	36	16	27

'KIAA1407 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.111 (Fisher's exact test), Q value = 1

Table S3617. Gene #454: 'KIAA1407 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
KIAA1407 MUTATED	2	3	0
KIAA1407 WILD-TYPE	36	17	26

'KIAA1407 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.087 (Fisher's exact test), Q value = 1

Table S3618. Gene #454: 'KIAA1407 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
KIAA1407 MUTATED	4	0	1
KIAA1407 WILD-TYPE	23	19	37

'PCDH15 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.337 (Fisher's exact test), Q value = 1

Table S3619. Gene #455: 'PCDH15 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
PCDH15 MUTATED	4	3	3
PCDH15 WILD-TYPE	20	42	18

'PCDH15 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.37 (Fisher's exact test), Q value = 1

Table S3620. Gene #455: 'PCDH15 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
PCDH15 MUTATED	5	2	3
PCDH15 WILD-TYPE	26	33	21

'PCDH15 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0212 (Fisher's exact test), Q value = 1

Table S3621. Gene #455: 'PCDH15 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
PCDH15 MUTATED	8	0	1
PCDH15 WILD-TYPE	32	25	18

Figure S290. Get High-res Image Gene #455: 'PCDH15 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

'PCDH15 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0472 (Fisher's exact test), Q value = 1

Table S3622. Gene #455: 'PCDH15 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
PCDH15 MUTATED	1	1	7
PCDH15 WILD-TYPE	0	30	45

Figure S291. Get High-res Image Gene #455: 'PCDH15 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'PCDH15 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.292 (Fisher's exact test), Q value = 1

Table S3623. Gene #455: 'PCDH15 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
PCDH15 MUTATED	6	2	0	1
PCDH15 WILD-TYPE	25	18	11	21

'PCDH15 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.241 (Fisher's exact test), Q value = 1

Table S3624. Gene #455: 'PCDH15 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
PCDH15 MUTATED	6	0	3
PCDH15 WILD-TYPE	31	16	28

'PCDH15 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0708 (Fisher's exact test), Q value = 1

Table S3625. Gene #455: 'PCDH15 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
PCDH15 MUTATED	6	3	0
PCDH15 WILD-TYPE	32	17	26

'PCDH15 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.106 (Fisher's exact test), Q value = 1

Table S3626. Gene #455: 'PCDH15 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
PCDH15 MUTATED	2	0	7
PCDH15 WILD-TYPE	25	19	31

'SEC24D MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S3627. Gene #456: 'SEC24D MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
SEC24D MUTATED	1	3	1
SEC24D WILD-TYPE	23	42	20

'SEC24D MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.733 (Fisher's exact test), Q value = 1

Table S3628. Gene #456: 'SEC24D MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
SEC24D MUTATED	1	3	1
SEC24D WILD-TYPE	30	32	23

'SEC24D MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.301 (Fisher's exact test), Q value = 1

Table S3629. Gene #456: 'SEC24D MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
SEC24D MUTATED	1	3	1
SEC24D WILD-TYPE	39	22	18

'SEC24D MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S3630. Gene #456: 'SEC24D MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
SEC24D MUTATED	0	2	3
SEC24D WILD-TYPE	1	29	49

'SEC24D MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.419 (Fisher's exact test), Q value = 1

Table S3631. Gene #456: 'SEC24D MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
SEC24D MUTATED	1	1	0	3
SEC24D WILD-TYPE	30	19	11	19

'SEC24D MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.501 (Fisher's exact test), Q value = 1

Table S3632. Gene #456: 'SEC24D MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
SEC24D MUTATED	1	1	3
SEC24D WILD-TYPE	36	15	28

'SEC24D MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S3633. Gene #456: 'SEC24D MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
SEC24D MUTATED	2	1	2
SEC24D WILD-TYPE	36	19	24

'SEC24D MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.433 (Fisher's exact test), Q value = 1

Table S3634. Gene #456: 'SEC24D MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
SEC24D MUTATED	3	1	1
SEC24D WILD-TYPE	24	18	37

'SH3BP1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.671 (Fisher's exact test), Q value = 1

Table S3635. Gene #457: 'SH3BP1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
SH3BP1 MUTATED	0	3	1
SH3BP1 WILD-TYPE	24	42	20

'SH3BP1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.369 (Fisher's exact test), Q value = 1

Table S3636. Gene #457: 'SH3BP1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
SH3BP1 MUTATED	0	2	2
SH3BP1 WILD-TYPE	31	33	22

'SH3BP1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0412 (Fisher's exact test), Q value = 1

Table S3637. Gene #457: 'SH3BP1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
SH3BP1 MUTATED	1	0	3
SH3BP1 WILD-TYPE	39	25	16

Figure S292. Get High-res Image Gene #457: 'SH3BP1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

'SH3BP1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00233 (Fisher's exact test), Q value = 1

Table S3638. Gene #457: 'SH3BP1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
SH3BP1 MUTATED	1	3	0
SH3BP1 WILD-TYPE	0	28	52

Figure S293. Get High-res Image Gene #457: 'SH3BP1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'SH3BP1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0525 (Fisher's exact test), Q value = 1

Table S3639. Gene #457: 'SH3BP1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
SH3BP1 MUTATED	0	1	2	1
SH3BP1 WILD-TYPE	31	19	9	21

'SH3BP1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00994 (Fisher's exact test), Q value = 1

Table S3640. Gene #457: 'SH3BP1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
SH3BP1 MUTATED	0	3	1
SH3BP1 WILD-TYPE	37	13	30

Figure S294. Get High-res Image Gene #457: 'SH3BP1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'SH3BP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.075 (Fisher's exact test), Q value = 1

Table S3641. Gene #457: 'SH3BP1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
SH3BP1 MUTATED	0	1	3
SH3BP1 WILD-TYPE	38	19	23

'SH3BP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0247 (Fisher's exact test), Q value = 1

Table S3642. Gene #457: 'SH3BP1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
SH3BP1 MUTATED	1	3	0
SH3BP1 WILD-TYPE	26	16	38

Figure S295. Get High-res Image Gene #457: 'SH3BP1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

'ZFP36L2 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S3643. Gene #458: 'ZFP36L2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
ZFP36L2 MUTATED	1	2	0
ZFP36L2 WILD-TYPE	23	43	21

'ZFP36L2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.266 (Fisher's exact test), Q value = 1

Table S3644. Gene #458: 'ZFP36L2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
ZFP36L2 MUTATED	0	1	2
ZFP36L2 WILD-TYPE	31	34	22

'ZFP36L2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.596 (Fisher's exact test), Q value = 1

Table S3645. Gene #458: 'ZFP36L2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
ZFP36L2 MUTATED	2	0	1
ZFP36L2 WILD-TYPE	38	25	18

'ZFP36L2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0357 (Fisher's exact test), Q value = 1

Table S3646. Gene #458: 'ZFP36L2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
ZFP36L2 MUTATED	1	1	1
ZFP36L2 WILD-TYPE	0	30	51

Figure S296. Get High-res Image Gene #458: 'ZFP36L2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'ZFP36L2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.498 (Fisher's exact test), Q value = 1

Table S3647. Gene #458: 'ZFP36L2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
ZFP36L2 MUTATED	1	1	1	0
ZFP36L2 WILD-TYPE	30	19	10	22

'ZFP36L2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.591 (Fisher's exact test), Q value = 1

Table S3648. Gene #458: 'ZFP36L2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
ZFP36L2 MUTATED	1	0	2
ZFP36L2 WILD-TYPE	36	16	29

'ZFP36L2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S3649. Gene #458: 'ZFP36L2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
ZFP36L2 MUTATED	1	1	1
ZFP36L2 WILD-TYPE	37	19	25

'ZFP36L2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.456 (Fisher's exact test), Q value = 1

Table S3650. Gene #458: 'ZFP36L2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
ZFP36L2 MUTATED	2	0	1
ZFP36L2 WILD-TYPE	25	19	37

'IKZF2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.798 (Fisher's exact test), Q value = 1

Table S3651. Gene #459: 'IKZF2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
IKZF2 MUTATED	1	1	1
IKZF2 WILD-TYPE	23	44	20

'IKZF2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.184 (Fisher's exact test), Q value = 1

Table S3652. Gene #459: 'IKZF2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
IKZF2 MUTATED	1	0	2
IKZF2 WILD-TYPE	30	35	22

'IKZF2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.314 (Fisher's exact test), Q value = 1

Table S3653. Gene #459: 'IKZF2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
IKZF2 MUTATED	3	0	0
IKZF2 WILD-TYPE	37	25	19

'IKZF2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0188 (Fisher's exact test), Q value = 1

Table S3654. Gene #459: 'IKZF2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
IKZF2 MUTATED	1	0	2
IKZF2 WILD-TYPE	0	31	50

Figure S297. Get High-res Image Gene #459: 'IKZF2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'IKZF2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.749 (Fisher's exact test), Q value = 1

Table S3655. Gene #459: 'IKZF2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
IKZF2 MUTATED	2	1	0	0
IKZF2 WILD-TYPE	29	19	11	22

'IKZF2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S3656. Gene #459: 'IKZF2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
IKZF2 MUTATED	2	0	1
IKZF2 WILD-TYPE	35	16	30

'IKZF2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.601 (Fisher's exact test), Q value = 1

Table S3657. Gene #459: 'IKZF2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
IKZF2 MUTATED	2	1	0
IKZF2 WILD-TYPE	36	19	26

'IKZF2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.795 (Fisher's exact test), Q value = 1

Table S3658. Gene #459: 'IKZF2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
IKZF2 MUTATED	1	0	2
IKZF2 WILD-TYPE	26	19	36

'RARRES3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.671 (Fisher's exact test), Q value = 1

Table S3659. Gene #460: 'RARRES3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
RARRES3 MUTATED	0	3	1
RARRES3 WILD-TYPE	24	42	20

'RARRES3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.674 (Fisher's exact test), Q value = 1

Table S3660. Gene #460: 'RARRES3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
RARRES3 MUTATED	1	1	2
RARRES3 WILD-TYPE	30	34	22

'RARRES3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S3661. Gene #460: 'RARRES3 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
RARRES3 MUTATED	2	1	1
RARRES3 WILD-TYPE	38	24	18

'RARRES3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0263 (Fisher's exact test), Q value = 1

Table S3662. Gene #460: 'RARRES3 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
RARRES3 MUTATED	1	2	1
RARRES3 WILD-TYPE	0	29	51

Figure S298. Get High-res Image Gene #460: 'RARRES3 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'RARRES3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.323 (Fisher's exact test), Q value = 1

Table S3663. Gene #460: 'RARRES3 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
RARRES3 MUTATED	1	2	1	0
RARRES3 WILD-TYPE	30	18	10	22

'RARRES3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.668 (Fisher's exact test), Q value = 1

Table S3664. Gene #460: 'RARRES3 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
RARRES3 MUTATED	1	1	2
RARRES3 WILD-TYPE	36	15	29

'RARRES3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.45 (Fisher's exact test), Q value = 1

Table S3665. Gene #460: 'RARRES3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
RARRES3 MUTATED	1	2	1
RARRES3 WILD-TYPE	37	18	25

'RARRES3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.813 (Fisher's exact test), Q value = 1

Table S3666. Gene #460: 'RARRES3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
RARRES3 MUTATED	2	1	1
RARRES3 WILD-TYPE	25	18	37

'MESDC2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.555 (Fisher's exact test), Q value = 1

Table S3667. Gene #461: 'MESDC2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
MESDC2 MUTATED	2	2	0
MESDC2 WILD-TYPE	22	43	21

'MESDC2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S3668. Gene #461: 'MESDC2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
MESDC2 MUTATED	1	2	1
MESDC2 WILD-TYPE	30	33	23

'MESDC2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S3669. Gene #461: 'MESDC2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
MESDC2 MUTATED	2	1	1
MESDC2 WILD-TYPE	38	24	18

'MESDC2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.645 (Fisher's exact test), Q value = 1

Table S3670. Gene #461: 'MESDC2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
MESDC2 MUTATED	0	2	2
MESDC2 WILD-TYPE	1	29	50

'MESDC2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S3671. Gene #461: 'MESDC2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
MESDC2 MUTATED	2	1	0	1
MESDC2 WILD-TYPE	29	19	11	21

'MESDC2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.829 (Fisher's exact test), Q value = 1

Table S3672. Gene #461: 'MESDC2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
MESDC2 MUTATED	2	0	2
MESDC2 WILD-TYPE	35	16	29

'MESDC2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S3673. Gene #461: 'MESDC2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
MESDC2 MUTATED	2	1	1
MESDC2 WILD-TYPE	36	19	25

'MESDC2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.682 (Fisher's exact test), Q value = 1

Table S3674. Gene #461: 'MESDC2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
MESDC2 MUTATED	2	0	2
MESDC2 WILD-TYPE	25	19	36

'ST3GAL5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.605 (Fisher's exact test), Q value = 1

Table S3675. Gene #462: 'ST3GAL5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
ST3GAL5 MUTATED	0	2	1
ST3GAL5 WILD-TYPE	24	43	20

'ST3GAL5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S3676. Gene #462: 'ST3GAL5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
ST3GAL5 MUTATED	1	1	1
ST3GAL5 WILD-TYPE	30	34	23

'ST3GAL5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S3677. Gene #462: 'ST3GAL5 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
ST3GAL5 MUTATED	2	1	0
ST3GAL5 WILD-TYPE	38	24	19

'ST3GAL5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0357 (Fisher's exact test), Q value = 1

Table S3678. Gene #462: 'ST3GAL5 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
ST3GAL5 MUTATED	1	1	1
ST3GAL5 WILD-TYPE	0	30	51

Figure S299. Get High-res Image Gene #462: 'ST3GAL5 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'ST3GAL5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.426 (Fisher's exact test), Q value = 1

Table S3679. Gene #462: 'ST3GAL5 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
ST3GAL5 MUTATED	1	2	0	0
ST3GAL5 WILD-TYPE	30	18	11	22

'ST3GAL5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.591 (Fisher's exact test), Q value = 1

Table S3680. Gene #462: 'ST3GAL5 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
ST3GAL5 MUTATED	1	0	2
ST3GAL5 WILD-TYPE	36	16	29

'ST3GAL5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.601 (Fisher's exact test), Q value = 1

Table S3681. Gene #462: 'ST3GAL5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
ST3GAL5 MUTATED	2	1	0
ST3GAL5 WILD-TYPE	36	19	26

'ST3GAL5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.456 (Fisher's exact test), Q value = 1

Table S3682. Gene #462: 'ST3GAL5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
ST3GAL5 MUTATED	2	0	1
ST3GAL5 WILD-TYPE	25	19	37

'CRIPAK MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S3683. Gene #463: 'CRIPAK MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
CRIPAK MUTATED	1	2	0
CRIPAK WILD-TYPE	23	43	21

'CRIPAK MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.778 (Fisher's exact test), Q value = 1

Table S3684. Gene #463: 'CRIPAK MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
CRIPAK MUTATED	1	2	0
CRIPAK WILD-TYPE	30	33	24

'CRIPAK MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S3685. Gene #463: 'CRIPAK MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
CRIPAK MUTATED	2	1	0
CRIPAK WILD-TYPE	38	24	19

'CRIPAK MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.315 (Fisher's exact test), Q value = 1

Table S3686. Gene #463: 'CRIPAK MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
CRIPAK MUTATED	0	0	3
CRIPAK WILD-TYPE	1	31	49

'CRIPAK MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.573 (Fisher's exact test), Q value = 1

Table S3687. Gene #463: 'CRIPAK MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
CRIPAK MUTATED	1	0	0	2
CRIPAK WILD-TYPE	30	20	11	20

'CRIPAK MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S3688. Gene #463: 'CRIPAK MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
CRIPAK MUTATED	2	0	1
CRIPAK WILD-TYPE	35	16	30

'CRIPAK MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.601 (Fisher's exact test), Q value = 1

Table S3689. Gene #463: 'CRIPAK MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
CRIPAK MUTATED	2	1	0
CRIPAK WILD-TYPE	36	19	26

'CRIPAK MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.795 (Fisher's exact test), Q value = 1

Table S3690. Gene #463: 'CRIPAK MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
CRIPAK MUTATED	1	0	2
CRIPAK WILD-TYPE	26	19	36

'LILRB5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.143 (Fisher's exact test), Q value = 1

Table S3691. Gene #464: 'LILRB5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
LILRB5 MUTATED	0	6	1
LILRB5 WILD-TYPE	24	39	20

'LILRB5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.103 (Fisher's exact test), Q value = 1

Table S3692. Gene #464: 'LILRB5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
LILRB5 MUTATED	0	4	3
LILRB5 WILD-TYPE	31	31	21

'LILRB5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.885 (Fisher's exact test), Q value = 1

Table S3693. Gene #464: 'LILRB5 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
LILRB5 MUTATED	3	2	2
LILRB5 WILD-TYPE	37	23	17

'LILRB5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0646 (Fisher's exact test), Q value = 1

Table S3694. Gene #464: 'LILRB5 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
LILRB5 MUTATED	1	3	3
LILRB5 WILD-TYPE	0	28	49

'LILRB5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.467 (Fisher's exact test), Q value = 1

Table S3695. Gene #464: 'LILRB5 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
LILRB5 MUTATED	1	2	1	3
LILRB5 WILD-TYPE	30	18	10	19

'LILRB5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.672 (Fisher's exact test), Q value = 1

Table S3696. Gene #464: 'LILRB5 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
LILRB5 MUTATED	2	2	3
LILRB5 WILD-TYPE	35	14	28

'LILRB5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.602 (Fisher's exact test), Q value = 1

Table S3697. Gene #464: 'LILRB5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
LILRB5 MUTATED	2	2	3
LILRB5 WILD-TYPE	36	18	23

'LILRB5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.676 (Fisher's exact test), Q value = 1

Table S3698. Gene #464: 'LILRB5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
LILRB5 MUTATED	3	2	2
LILRB5 WILD-TYPE	24	17	36

'KIAA1967 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S3699. Gene #465: 'KIAA1967 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
KIAA1967 MUTATED	1	2	1
KIAA1967 WILD-TYPE	23	43	20

'KIAA1967 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.674 (Fisher's exact test), Q value = 1

Table S3700. Gene #465: 'KIAA1967 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
KIAA1967 MUTATED	1	1	2
KIAA1967 WILD-TYPE	30	34	22

'KIAA1967 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.255 (Fisher's exact test), Q value = 1

Table S3701. Gene #465: 'KIAA1967 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
KIAA1967 MUTATED	2	0	2
KIAA1967 WILD-TYPE	38	25	17

'KIAA1967 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0639 (Fisher's exact test), Q value = 1

Table S3702. Gene #465: 'KIAA1967 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
KIAA1967 MUTATED	1	1	2
KIAA1967 WILD-TYPE	0	30	50

'KIAA1967 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0948 (Fisher's exact test), Q value = 1

Table S3703. Gene #465: 'KIAA1967 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
KIAA1967 MUTATED	0	1	0	3
KIAA1967 WILD-TYPE	31	19	11	19

'KIAA1967 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S3704. Gene #465: 'KIAA1967 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
KIAA1967 MUTATED	2	1	1
KIAA1967 WILD-TYPE	35	15	30

'KIAA1967 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.811 (Fisher's exact test), Q value = 1

Table S3705. Gene #465: 'KIAA1967 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
KIAA1967 MUTATED	1	1	2
KIAA1967 WILD-TYPE	37	19	24

'KIAA1967 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S3706. Gene #465: 'KIAA1967 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
KIAA1967 MUTATED	1	1	2
KIAA1967 WILD-TYPE	26	18	36

'UTY MUTATION STATUS' versus 'CN_CNMF'

P value = 0.201 (Fisher's exact test), Q value = 1

Table S3707. Gene #466: 'UTY MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
UTY MUTATED	0	1	2
UTY WILD-TYPE	24	44	19

'UTY MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.266 (Fisher's exact test), Q value = 1

Table S3708. Gene #466: 'UTY MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
UTY MUTATED	0	1	2
UTY WILD-TYPE	31	34	22

'UTY MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.211 (Fisher's exact test), Q value = 1

Table S3709. Gene #466: 'UTY MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
UTY MUTATED	1	0	2
UTY WILD-TYPE	39	25	17

'UTY MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.569 (Fisher's exact test), Q value = 1

Table S3710. Gene #466: 'UTY MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
UTY MUTATED	0	2	1
UTY WILD-TYPE	1	29	51

'UTY MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0379 (Fisher's exact test), Q value = 1

Table S3711. Gene #466: 'UTY MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
UTY MUTATED	0	0	2	1
UTY WILD-TYPE	31	20	9	21

Figure S300. Get High-res Image Gene #466: 'UTY MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

'UTY MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0915 (Fisher's exact test), Q value = 1

Table S3712. Gene #466: 'UTY MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
UTY MUTATED	1	2	0
UTY WILD-TYPE	36	14	31

'UTY MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0393 (Fisher's exact test), Q value = 1

Table S3713. Gene #466: 'UTY MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
UTY MUTATED	0	0	3
UTY WILD-TYPE	38	20	23

Figure S301. Get High-res Image Gene #466: 'UTY MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

'UTY MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.158 (Fisher's exact test), Q value = 1

Table S3714. Gene #466: 'UTY MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
UTY MUTATED	0	2	1
UTY WILD-TYPE	27	17	37

'REC8 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.176 (Fisher's exact test), Q value = 1

Table S3715. Gene #467: 'REC8 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
REC8 MUTATED	0	4	0
REC8 WILD-TYPE	24	41	21

'REC8 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.243 (Fisher's exact test), Q value = 1

Table S3716. Gene #467: 'REC8 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
REC8 MUTATED	0	3	1
REC8 WILD-TYPE	31	32	23

'REC8 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.343 (Fisher's exact test), Q value = 1

Table S3717. Gene #467: 'REC8 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
REC8 MUTATED	1	1	2
REC8 WILD-TYPE	39	24	17

'REC8 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00233 (Fisher's exact test), Q value = 1

Table S3718. Gene #467: 'REC8 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
REC8 MUTATED	1	3	0
REC8 WILD-TYPE	0	28	52

Figure S302. Get High-res Image Gene #467: 'REC8 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'REC8 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0246 (Fisher's exact test), Q value = 1

Table S3719. Gene #467: 'REC8 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
REC8 MUTATED	0	3	1	0
REC8 WILD-TYPE	31	17	10	22

Figure S303. Get High-res Image Gene #467: 'REC8 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

'REC8 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.137 (Fisher's exact test), Q value = 1

Table S3720. Gene #467: 'REC8 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
REC8 MUTATED	0	1	3
REC8 WILD-TYPE	37	15	28

'REC8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0256 (Fisher's exact test), Q value = 1

Table S3721. Gene #467: 'REC8 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
REC8 MUTATED	0	3	1
REC8 WILD-TYPE	38	17	25

Figure S304. Get High-res Image Gene #467: 'REC8 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

'REC8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0726 (Fisher's exact test), Q value = 1

Table S3722. Gene #467: 'REC8 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
REC8 MUTATED	3	1	0
REC8 WILD-TYPE	24	18	38

'PIH1D2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.428 (Fisher's exact test), Q value = 1

Table S3723. Gene #468: 'PIH1D2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
PIH1D2 MUTATED	0	3	0
PIH1D2 WILD-TYPE	24	42	21

'PIH1D2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.266 (Fisher's exact test), Q value = 1

Table S3724. Gene #468: 'PIH1D2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
PIH1D2 MUTATED	0	1	2
PIH1D2 WILD-TYPE	31	34	22

'PIH1D2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.211 (Fisher's exact test), Q value = 1

Table S3725. Gene #468: 'PIH1D2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
PIH1D2 MUTATED	1	0	2
PIH1D2 WILD-TYPE	39	25	17

'PIH1D2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00488 (Fisher's exact test), Q value = 1

Table S3726. Gene #468: 'PIH1D2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
PIH1D2 MUTATED	1	2	0
PIH1D2 WILD-TYPE	0	29	52

Figure S305. Get High-res Image Gene #468: 'PIH1D2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'PIH1D2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.311 (Fisher's exact test), Q value = 1

Table S3727. Gene #468: 'PIH1D2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
PIH1D2 MUTATED	0	1	1	1
PIH1D2 WILD-TYPE	31	19	10	21

'PIH1D2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.217 (Fisher's exact test), Q value = 1

Table S3728. Gene #468: 'PIH1D2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
PIH1D2 MUTATED	0	1	2
PIH1D2 WILD-TYPE	37	15	29

'PIH1D2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.159 (Fisher's exact test), Q value = 1

Table S3729. Gene #468: 'PIH1D2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
PIH1D2 MUTATED	0	1	2
PIH1D2 WILD-TYPE	38	19	24

'PIH1D2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.228 (Fisher's exact test), Q value = 1

Table S3730. Gene #468: 'PIH1D2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
PIH1D2 MUTATED	2	1	0
PIH1D2 WILD-TYPE	25	18	38

'BRAF MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S3731. Gene #469: 'BRAF MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
BRAF MUTATED	1	2	0
BRAF WILD-TYPE	23	43	21

'BRAF MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.184 (Fisher's exact test), Q value = 1

Table S3732. Gene #469: 'BRAF MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
BRAF MUTATED	1	0	2
BRAF WILD-TYPE	30	35	22

'BRAF MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.596 (Fisher's exact test), Q value = 1

Table S3733. Gene #469: 'BRAF MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
BRAF MUTATED	2	0	1
BRAF WILD-TYPE	38	25	18

'BRAF MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S3734. Gene #469: 'BRAF MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
BRAF MUTATED	0	1	2
BRAF WILD-TYPE	1	30	50

'BRAF MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.857 (Fisher's exact test), Q value = 1

Table S3735. Gene #469: 'BRAF MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
BRAF MUTATED	2	0	0	1
BRAF WILD-TYPE	29	20	11	21

'BRAF MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.41 (Fisher's exact test), Q value = 1

Table S3736. Gene #469: 'BRAF MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
BRAF MUTATED	2	1	0
BRAF WILD-TYPE	35	15	31

'BRAF MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.793 (Fisher's exact test), Q value = 1

Table S3737. Gene #469: 'BRAF MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
BRAF MUTATED	2	0	1
BRAF WILD-TYPE	36	20	25

'BRAF MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.596 (Fisher's exact test), Q value = 1

Table S3738. Gene #469: 'BRAF MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
BRAF MUTATED	0	1	2
BRAF WILD-TYPE	27	18	36

'WDR90 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.423 (Fisher's exact test), Q value = 1

Table S3739. Gene #470: 'WDR90 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	24	45	21
WDR90 MUTATED	0	4	1
WDR90 WILD-TYPE	24	41	20

'WDR90 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.254 (Fisher's exact test), Q value = 1

Table S3740. Gene #470: 'WDR90 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	31	35	24
WDR90 MUTATED	0	3	2
WDR90 WILD-TYPE	31	32	22

'WDR90 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.848 (Fisher's exact test), Q value = 1

Table S3741. Gene #470: 'WDR90 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	40	25	19
WDR90 MUTATED	2	2	1
WDR90 WILD-TYPE	38	23	18

'WDR90 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0428 (Fisher's exact test), Q value = 1

Table S3742. Gene #470: 'WDR90 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	1	31	52
WDR90 MUTATED	1	2	2
WDR90 WILD-TYPE	0	29	50

Figure S306. Get High-res Image Gene #470: 'WDR90 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'WDR90 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0834 (Fisher's exact test), Q value = 1

Table S3743. Gene #470: 'WDR90 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	31	20	11	22
WDR90 MUTATED	0	3	0	2
WDR90 WILD-TYPE	31	17	11	20

'WDR90 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.201 (Fisher's exact test), Q value = 1

Table S3744. Gene #470: 'WDR90 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	37	16	31
WDR90 MUTATED	1	0	4
WDR90 WILD-TYPE	36	16	27

'WDR90 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0127 (Fisher's exact test), Q value = 1

Table S3745. Gene #470: 'WDR90 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	38	20	26
WDR90 MUTATED	1	4	0
WDR90 WILD-TYPE	37	16	26

Figure S307. Get High-res Image Gene #470: 'WDR90 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

'WDR90 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.087 (Fisher's exact test), Q value = 1

Table S3746. Gene #470: 'WDR90 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	27	19	38
WDR90 MUTATED	4	0	1
WDR90 WILD-TYPE	23	19	37