
R version 2.10.1 (2009-12-14)
Copyright (C) 2009 The R Foundation for Statistical Computing
ISBN 3-900051-07-0

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> source("/xchip/tcga/gdac_prod/applications/process_mgmt/firehose_task_registry/tcga-gdac/GDAC_Correlate_Genomic_Events/broadinstitute.org/cancer.genome.analysis/10441/13/Correlate_Genomic_Events.R")
> result <- main("/xchip/tcga/gdac_prod/applications/process_mgmt/firehose_task_registry/tcga-gdac/GDAC_Correlate_Genomic_Events/broadinstitute.org/cancer.genome.analysis/10441/13/", "-nF=/xchip/tcga/Tools/Nozzle/v1.current", "-tTRUE", "-iD=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/PCPG-TP/8282815/transformed.cor.cli.txt", "-iC=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering/PCPG-TP/8282704/PCPG-TP.transferedmergedcluster.txt", "-fF=", "-fC=3", "-fH=5", "-fW=9", "-fP=OUT", "-cP=0.05", "-cQ=0.25", "-MF=ONLYSIG", "-oT=PCPG-TP", "-nV=Nozzle.R1", "-OP=MUTSIG", "-iT=", "-iX=")
[1] "terrence_modification_tag"
[1] TRUE
[1] "nver"          "-nV=Nozzle.R1"
[1] "nfn"                                 "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "successfully load Nozzle.R1"
[1] "ofn"         "-oT=PCPG-TP"
[1] "opt"        "-OP=MUTSIG"
[1] "tl"   "-iT="
[1] "dx"   "-iX="
[1] "opt"    "MUTSIG"
[1] "dx" ""  
[1] "cfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering/PCPG-TP/8282704/PCPG-TP.transferedmergedcluster.txt"
[1] "dfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/PCPG-TP/8282815/transformed.cor.cli.txt"

nPatients in clinical file=179, in cluster file=159, common to both=159
[1] "Reduce the number of clustering variables from 80 to 67."
[1]  67 159
[1] "1P GAIN MUTATION ANALYSIS"
[1] 3
  1P GAIN MUTATED 1P GAIN WILD-TYPE 
                5               154 
  1P GAIN MUTATED 1P GAIN WILD-TYPE 
                5               154 
[1] "1Q GAIN MUTATION ANALYSIS"
[1] 3
  1Q GAIN MUTATED 1Q GAIN WILD-TYPE 
               16               143 
  1Q GAIN MUTATED 1Q GAIN WILD-TYPE 
               16               143 
[1] "2P GAIN MUTATION ANALYSIS"
[1] 3
  2P GAIN MUTATED 2P GAIN WILD-TYPE 
                6               153 
  2P GAIN MUTATED 2P GAIN WILD-TYPE 
                6               153 
[1] "4P GAIN MUTATION ANALYSIS"
[1] 3
  4P GAIN MUTATED 4P GAIN WILD-TYPE 
                4               155 
  4P GAIN MUTATED 4P GAIN WILD-TYPE 
                4               155 
[1] "4Q GAIN MUTATION ANALYSIS"
[1] 3
  4Q GAIN MUTATED 4Q GAIN WILD-TYPE 
                3               156 
  4Q GAIN MUTATED 4Q GAIN WILD-TYPE 
                3               156 
[1] "5P GAIN MUTATION ANALYSIS"
[1] 3
  5P GAIN MUTATED 5P GAIN WILD-TYPE 
               11               148 
  5P GAIN MUTATED 5P GAIN WILD-TYPE 
               11               148 
[1] "5Q GAIN MUTATION ANALYSIS"
[1] 3
  5Q GAIN MUTATED 5Q GAIN WILD-TYPE 
                7               152 
  5Q GAIN MUTATED 5Q GAIN WILD-TYPE 
                7               152 
[1] "6P GAIN MUTATION ANALYSIS"
[1] 3
  6P GAIN MUTATED 6P GAIN WILD-TYPE 
               13               146 
  6P GAIN MUTATED 6P GAIN WILD-TYPE 
               13               146 
[1] "6Q GAIN MUTATION ANALYSIS"
[1] 3
  6Q GAIN MUTATED 6Q GAIN WILD-TYPE 
                7               152 
  6Q GAIN MUTATED 6Q GAIN WILD-TYPE 
                7               152 
[1] "7P GAIN MUTATION ANALYSIS"
[1] 3
  7P GAIN MUTATED 7P GAIN WILD-TYPE 
               26               133 
  7P GAIN MUTATED 7P GAIN WILD-TYPE 
               26               133 
[1] "7Q GAIN MUTATION ANALYSIS"
[1] 3
  7Q GAIN MUTATED 7Q GAIN WILD-TYPE 
               21               138 
  7Q GAIN MUTATED 7Q GAIN WILD-TYPE 
               21               138 
[1] "8P GAIN MUTATION ANALYSIS"
[1] 3
  8P GAIN MUTATED 8P GAIN WILD-TYPE 
               10               149 
  8P GAIN MUTATED 8P GAIN WILD-TYPE 
               10               149 
[1] "8Q GAIN MUTATION ANALYSIS"
[1] 3
  8Q GAIN MUTATED 8Q GAIN WILD-TYPE 
               13               146 
  8Q GAIN MUTATED 8Q GAIN WILD-TYPE 
               13               146 
[1] "9P GAIN MUTATION ANALYSIS"
[1] 3
  9P GAIN MUTATED 9P GAIN WILD-TYPE 
                3               156 
  9P GAIN MUTATED 9P GAIN WILD-TYPE 
                3               156 
[1] "9Q GAIN MUTATION ANALYSIS"
[1] 3
  9Q GAIN MUTATED 9Q GAIN WILD-TYPE 
                3               156 
  9Q GAIN MUTATED 9Q GAIN WILD-TYPE 
                3               156 
[1] "10P GAIN MUTATION ANALYSIS"
[1] 3
  10P GAIN MUTATED 10P GAIN WILD-TYPE 
                12                147 
  10P GAIN MUTATED 10P GAIN WILD-TYPE 
                12                147 
[1] "10Q GAIN MUTATION ANALYSIS"
[1] 3
  10Q GAIN MUTATED 10Q GAIN WILD-TYPE 
                10                149 
  10Q GAIN MUTATED 10Q GAIN WILD-TYPE 
                10                149 
[1] "11P GAIN MUTATION ANALYSIS"
[1] 3
  11P GAIN MUTATED 11P GAIN WILD-TYPE 
                 4                155 
  11P GAIN MUTATED 11P GAIN WILD-TYPE 
                 4                155 
[1] "12P GAIN MUTATION ANALYSIS"
[1] 3
  12P GAIN MUTATED 12P GAIN WILD-TYPE 
                11                148 
  12P GAIN MUTATED 12P GAIN WILD-TYPE 
                11                148 
[1] "12Q GAIN MUTATION ANALYSIS"
[1] 3
  12Q GAIN MUTATED 12Q GAIN WILD-TYPE 
                13                146 
  12Q GAIN MUTATED 12Q GAIN WILD-TYPE 
                13                146 
[1] "13Q GAIN MUTATION ANALYSIS"
[1] 3
  13Q GAIN MUTATED 13Q GAIN WILD-TYPE 
                 9                150 
  13Q GAIN MUTATED 13Q GAIN WILD-TYPE 
                 9                150 
[1] "14Q GAIN MUTATION ANALYSIS"
[1] 3
  14Q GAIN MUTATED 14Q GAIN WILD-TYPE 
                 4                155 
  14Q GAIN MUTATED 14Q GAIN WILD-TYPE 
                 4                155 
[1] "15Q GAIN MUTATION ANALYSIS"
[1] 3
  15Q GAIN MUTATED 15Q GAIN WILD-TYPE 
                14                145 
  15Q GAIN MUTATED 15Q GAIN WILD-TYPE 
                14                145 
[1] "16P GAIN MUTATION ANALYSIS"
[1] 3
  16P GAIN MUTATED 16P GAIN WILD-TYPE 
                 6                153 
  16P GAIN MUTATED 16P GAIN WILD-TYPE 
                 6                153 
[1] "16Q GAIN MUTATION ANALYSIS"
[1] 3
  16Q GAIN MUTATED 16Q GAIN WILD-TYPE 
                 6                153 
  16Q GAIN MUTATED 16Q GAIN WILD-TYPE 
                 6                153 
[1] "17Q GAIN MUTATION ANALYSIS"
[1] 3
  17Q GAIN MUTATED 17Q GAIN WILD-TYPE 
                 4                155 
  17Q GAIN MUTATED 17Q GAIN WILD-TYPE 
                 4                155 
[1] "18P GAIN MUTATION ANALYSIS"
[1] 3
  18P GAIN MUTATED 18P GAIN WILD-TYPE 
                 8                151 
  18P GAIN MUTATED 18P GAIN WILD-TYPE 
                 8                151 
[1] "18Q GAIN MUTATION ANALYSIS"
[1] 3
  18Q GAIN MUTATED 18Q GAIN WILD-TYPE 
                10                149 
  18Q GAIN MUTATED 18Q GAIN WILD-TYPE 
                10                149 
[1] "19P GAIN MUTATION ANALYSIS"
[1] 3
  19P GAIN MUTATED 19P GAIN WILD-TYPE 
                20                139 
  19P GAIN MUTATED 19P GAIN WILD-TYPE 
                20                139 
[1] "19Q GAIN MUTATION ANALYSIS"
[1] 3
  19Q GAIN MUTATED 19Q GAIN WILD-TYPE 
                14                145 
  19Q GAIN MUTATED 19Q GAIN WILD-TYPE 
                14                145 
[1] "20P GAIN MUTATION ANALYSIS"
[1] 3
  20P GAIN MUTATED 20P GAIN WILD-TYPE 
                11                148 
  20P GAIN MUTATED 20P GAIN WILD-TYPE 
                11                148 
[1] "20Q GAIN MUTATION ANALYSIS"
[1] 3
  20Q GAIN MUTATED 20Q GAIN WILD-TYPE 
                 9                150 
  20Q GAIN MUTATED 20Q GAIN WILD-TYPE 
                 9                150 
[1] "21Q GAIN MUTATION ANALYSIS"
[1] 3
  21Q GAIN MUTATED 21Q GAIN WILD-TYPE 
                 3                156 
  21Q GAIN MUTATED 21Q GAIN WILD-TYPE 
                 3                156 
[1] "22Q GAIN MUTATION ANALYSIS"
[1] 3
  22Q GAIN MUTATED 22Q GAIN WILD-TYPE 
                 3                156 
  22Q GAIN MUTATED 22Q GAIN WILD-TYPE 
                 3                156 
[1] "XQ GAIN MUTATION ANALYSIS"
[1] 3
  XQ GAIN MUTATED XQ GAIN WILD-TYPE 
                5               154 
  XQ GAIN MUTATED XQ GAIN WILD-TYPE 
                5               154 
[1] "1P LOSS MUTATION ANALYSIS"
[1] 3
  1P LOSS MUTATED 1P LOSS WILD-TYPE 
               96                63 
  1P LOSS MUTATED 1P LOSS WILD-TYPE 
               96                63 
[1] "1Q LOSS MUTATION ANALYSIS"
[1] 3
  1Q LOSS MUTATED 1Q LOSS WILD-TYPE 
               28               131 
  1Q LOSS MUTATED 1Q LOSS WILD-TYPE 
               28               131 
[1] "2P LOSS MUTATION ANALYSIS"
[1] 3
  2P LOSS MUTATED 2P LOSS WILD-TYPE 
               10               149 
  2P LOSS MUTATED 2P LOSS WILD-TYPE 
               10               149 
[1] "2Q LOSS MUTATION ANALYSIS"
[1] 3
  2Q LOSS MUTATED 2Q LOSS WILD-TYPE 
               13               146 
  2Q LOSS MUTATED 2Q LOSS WILD-TYPE 
               13               146 
[1] "3P LOSS MUTATION ANALYSIS"
[1] 3
  3P LOSS MUTATED 3P LOSS WILD-TYPE 
               61                98 
  3P LOSS MUTATED 3P LOSS WILD-TYPE 
               61                98 
[1] "3Q LOSS MUTATION ANALYSIS"
[1] 3
  3Q LOSS MUTATED 3Q LOSS WILD-TYPE 
               89                70 
  3Q LOSS MUTATED 3Q LOSS WILD-TYPE 
               89                70 
[1] "4P LOSS MUTATION ANALYSIS"
[1] 3
  4P LOSS MUTATED 4P LOSS WILD-TYPE 
               10               149 
  4P LOSS MUTATED 4P LOSS WILD-TYPE 
               10               149 
[1] "4Q LOSS MUTATION ANALYSIS"
[1] 3
  4Q LOSS MUTATED 4Q LOSS WILD-TYPE 
               10               149 
  4Q LOSS MUTATED 4Q LOSS WILD-TYPE 
               10               149 
[1] "5P LOSS MUTATION ANALYSIS"
[1] 3
  5P LOSS MUTATED 5P LOSS WILD-TYPE 
                5               154 
  5P LOSS MUTATED 5P LOSS WILD-TYPE 
                5               154 
[1] "5Q LOSS MUTATION ANALYSIS"
[1] 3
  5Q LOSS MUTATED 5Q LOSS WILD-TYPE 
                7               152 
  5Q LOSS MUTATED 5Q LOSS WILD-TYPE 
                7               152 
[1] "6Q LOSS MUTATION ANALYSIS"
[1] 3
  6Q LOSS MUTATED 6Q LOSS WILD-TYPE 
               19               140 
  6Q LOSS MUTATED 6Q LOSS WILD-TYPE 
               19               140 
[1] "7Q LOSS MUTATION ANALYSIS"
[1] 3
  7Q LOSS MUTATED 7Q LOSS WILD-TYPE 
                6               153 
  7Q LOSS MUTATED 7Q LOSS WILD-TYPE 
                6               153 
[1] "8P LOSS MUTATION ANALYSIS"
[1] 3
  8P LOSS MUTATED 8P LOSS WILD-TYPE 
               19               140 
  8P LOSS MUTATED 8P LOSS WILD-TYPE 
               19               140 
[1] "8Q LOSS MUTATION ANALYSIS"
[1] 3
  8Q LOSS MUTATED 8Q LOSS WILD-TYPE 
               12               147 
  8Q LOSS MUTATED 8Q LOSS WILD-TYPE 
               12               147 
[1] "9P LOSS MUTATION ANALYSIS"
[1] 3
  9P LOSS MUTATED 9P LOSS WILD-TYPE 
               12               147 
  9P LOSS MUTATED 9P LOSS WILD-TYPE 
               12               147 
[1] "9Q LOSS MUTATION ANALYSIS"
[1] 3
  9Q LOSS MUTATED 9Q LOSS WILD-TYPE 
               11               148 
  9Q LOSS MUTATED 9Q LOSS WILD-TYPE 
               11               148 
[1] "11P LOSS MUTATION ANALYSIS"
[1] 3
  11P LOSS MUTATED 11P LOSS WILD-TYPE 
                52                107 
  11P LOSS MUTATED 11P LOSS WILD-TYPE 
                52                107 
[1] "11Q LOSS MUTATION ANALYSIS"
[1] 3
  11Q LOSS MUTATED 11Q LOSS WILD-TYPE 
                39                120 
  11Q LOSS MUTATED 11Q LOSS WILD-TYPE 
                39                120 
[1] "13Q LOSS MUTATION ANALYSIS"
[1] 3
  13Q LOSS MUTATED 13Q LOSS WILD-TYPE 
                 7                152 
  13Q LOSS MUTATED 13Q LOSS WILD-TYPE 
                 7                152 
[1] "14Q LOSS MUTATION ANALYSIS"
[1] 3
  14Q LOSS MUTATED 14Q LOSS WILD-TYPE 
                20                139 
  14Q LOSS MUTATED 14Q LOSS WILD-TYPE 
                20                139 
[1] "15Q LOSS MUTATION ANALYSIS"
[1] 3
  15Q LOSS MUTATED 15Q LOSS WILD-TYPE 
                 3                156 
  15Q LOSS MUTATED 15Q LOSS WILD-TYPE 
                 3                156 
[1] "16P LOSS MUTATION ANALYSIS"
[1] 3
  16P LOSS MUTATED 16P LOSS WILD-TYPE 
                 8                151 
  16P LOSS MUTATED 16P LOSS WILD-TYPE 
                 8                151 
[1] "16Q LOSS MUTATION ANALYSIS"
[1] 3
  16Q LOSS MUTATED 16Q LOSS WILD-TYPE 
                 4                155 
  16Q LOSS MUTATED 16Q LOSS WILD-TYPE 
                 4                155 
[1] "17P LOSS MUTATION ANALYSIS"
[1] 3
  17P LOSS MUTATED 17P LOSS WILD-TYPE 
                61                 98 
  17P LOSS MUTATED 17P LOSS WILD-TYPE 
                61                 98 
[1] "17Q LOSS MUTATION ANALYSIS"
[1] 3
  17Q LOSS MUTATED 17Q LOSS WILD-TYPE 
                20                139 
  17Q LOSS MUTATED 17Q LOSS WILD-TYPE 
                20                139 
[1] "18P LOSS MUTATION ANALYSIS"
[1] 3
  18P LOSS MUTATED 18P LOSS WILD-TYPE 
                16                143 
  18P LOSS MUTATED 18P LOSS WILD-TYPE 
                16                143 
[1] "18Q LOSS MUTATION ANALYSIS"
[1] 3
  18Q LOSS MUTATED 18Q LOSS WILD-TYPE 
                 6                153 
  18Q LOSS MUTATED 18Q LOSS WILD-TYPE 
                 6                153 
[1] "19Q LOSS MUTATION ANALYSIS"
[1] 3
  19Q LOSS MUTATED 19Q LOSS WILD-TYPE 
                 6                153 
  19Q LOSS MUTATED 19Q LOSS WILD-TYPE 
                 6                153 
[1] "20Q LOSS MUTATION ANALYSIS"
[1] 3
  20Q LOSS MUTATED 20Q LOSS WILD-TYPE 
                 3                156 
  20Q LOSS MUTATED 20Q LOSS WILD-TYPE 
                 3                156 
[1] "21Q LOSS MUTATION ANALYSIS"
[1] 3
  21Q LOSS MUTATED 21Q LOSS WILD-TYPE 
                34                125 
  21Q LOSS MUTATED 21Q LOSS WILD-TYPE 
                34                125 
[1] "22Q LOSS MUTATION ANALYSIS"
[1] 3
  22Q LOSS MUTATED 22Q LOSS WILD-TYPE 
                56                103 
  22Q LOSS MUTATED 22Q LOSS WILD-TYPE 
                56                103 
[1] "XQ LOSS MUTATION ANALYSIS"
[1] 3
  XQ LOSS MUTATED XQ LOSS WILD-TYPE 
               49               110 
  XQ LOSS MUTATED XQ LOSS WILD-TYPE 
               49               110 
[1] "terrence_modification_tag"
[1] TRUE
[1] "data2feature, selection="
[1] "CN_CNMF"                     "METHLYATION_CNMF"           
[3] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
[5] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"

Input Data has 6 rows and 159 columns.

Variable 1:'CN_CNMF':	nDistinctValues=6,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 2:'METHLYATION_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 3:'MIRSEQ_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 4:'MIRSEQ_CHIERARCHICAL':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 5:'MIRSEQ_MATURE_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 6:'MIRSEQ_MATURE_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
[1] "rownames(nsurv.mat)"
[1] "CN_CNMF"                     "METHLYATION_CNMF"           
[3] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
[5] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"
[1] "TUMOR.?STAGE"
[1] "TUMOR.?GRADE"
[1] "PATHOLOGY.T"
[1] "PATHOLOGY.N"
Output Data has 159 columns, 0 survival variables, and 6 non-survival variables.
CN_CNMF, nv=6, binary=FALSE, numeric=FALSE
METHLYATION_CNMF, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_CNMF, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_CHIERARCHICAL, nv=4, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CNMF, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE

Clustering(1) Variable = 1P GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  1P GAIN MUTATED        4      1      0      0      0      0
  1P GAIN WILD-TYPE     19     23     57     46      7      2
D1V1, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1P GAIN MUTATED        1      3      1
  1P GAIN WILD-TYPE     39     74     41
D1V2, multiclass
        clus
vv       1P GAIN MUTATED 1P GAIN WILD-TYPE
  CLUS_1               1                39
  CLUS_2               3                74
  CLUS_3               1                41
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1P GAIN MUTATED        2      2      0
  1P GAIN WILD-TYPE     52     51     24
D1V3, multiclass
        clus
vv       1P GAIN MUTATED 1P GAIN WILD-TYPE
  CLUS_1               2                52
  CLUS_2               2                51
  CLUS_3               0                24
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  1P GAIN MUTATED        0      2      0      2
  1P GAIN WILD-TYPE     20     39     18     50
D1V4, multiclass
        clus
vv       1P GAIN MUTATED 1P GAIN WILD-TYPE
  CLUS_1               0                20
  CLUS_2               2                39
  CLUS_3               0                18
  CLUS_4               2                50
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1P GAIN MUTATED        2      2      0
  1P GAIN WILD-TYPE     32     53     42
D1V5, multiclass
        clus
vv       1P GAIN MUTATED 1P GAIN WILD-TYPE
  CLUS_1               2                32
  CLUS_2               2                53
  CLUS_3               0                42
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1P GAIN MUTATED        0      2      2
  1P GAIN WILD-TYPE     32     41     54
D1V6, multiclass
        clus
vv       1P GAIN MUTATED 1P GAIN WILD-TYPE
  CLUS_1               0                32
  CLUS_2               2                41
  CLUS_3               2                54

Clustering(2) Variable = 1Q GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  1Q GAIN MUTATED       13      1      2      0      0      0
  1Q GAIN WILD-TYPE     10     23     55     46      7      2
D2V1, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1Q GAIN MUTATED        5      8      3
  1Q GAIN WILD-TYPE     35     69     39
D2V2, multiclass
        clus
vv       1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  CLUS_1               5                35
  CLUS_2               8                69
  CLUS_3               3                39
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1Q GAIN MUTATED        7      4      1
  1Q GAIN WILD-TYPE     47     49     23
D2V3, multiclass
        clus
vv       1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  CLUS_1               7                47
  CLUS_2               4                49
  CLUS_3               1                23
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  1Q GAIN MUTATED        0      5      2      5
  1Q GAIN WILD-TYPE     20     36     16     47
D2V4, multiclass
        clus
vv       1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  CLUS_1               0                20
  CLUS_2               5                36
  CLUS_3               2                16
  CLUS_4               5                47
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1Q GAIN MUTATED        2      5      5
  1Q GAIN WILD-TYPE     32     50     37
D2V5, multiclass
        clus
vv       1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  CLUS_1               2                32
  CLUS_2               5                50
  CLUS_3               5                37
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1Q GAIN MUTATED        2      5      5
  1Q GAIN WILD-TYPE     30     38     51
D2V6, multiclass
        clus
vv       1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  CLUS_1               2                30
  CLUS_2               5                38
  CLUS_3               5                51

Clustering(3) Variable = 2P GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  2P GAIN MUTATED        0      1      0      4      1      0
  2P GAIN WILD-TYPE     23     23     57     42      6      2
D3V1, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2P GAIN MUTATED        5      1      0
  2P GAIN WILD-TYPE     35     76     42
D3V2, multiclass
        clus
vv       2P GAIN MUTATED 2P GAIN WILD-TYPE
  CLUS_1               5                35
  CLUS_2               1                76
  CLUS_3               0                42
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2P GAIN MUTATED        5      1      0
  2P GAIN WILD-TYPE     49     52     24
D3V3, multiclass
        clus
vv       2P GAIN MUTATED 2P GAIN WILD-TYPE
  CLUS_1               5                49
  CLUS_2               1                52
  CLUS_3               0                24
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  2P GAIN MUTATED        0      1      0      5
  2P GAIN WILD-TYPE     20     40     18     47
D3V4, multiclass
        clus
vv       2P GAIN MUTATED 2P GAIN WILD-TYPE
  CLUS_1               0                20
  CLUS_2               1                40
  CLUS_3               0                18
  CLUS_4               5                47
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2P GAIN MUTATED        5      1      0
  2P GAIN WILD-TYPE     29     54     42
D3V5, multiclass
        clus
vv       2P GAIN MUTATED 2P GAIN WILD-TYPE
  CLUS_1               5                29
  CLUS_2               1                54
  CLUS_3               0                42
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2P GAIN MUTATED        0      1      5
  2P GAIN WILD-TYPE     32     42     51
D3V6, multiclass
        clus
vv       2P GAIN MUTATED 2P GAIN WILD-TYPE
  CLUS_1               0                32
  CLUS_2               1                42
  CLUS_3               5                51

Clustering(4) Variable = 4P GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  4P GAIN MUTATED        0      0      2      2      0      0
  4P GAIN WILD-TYPE     23     24     55     44      7      2
D4V1, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4P GAIN MUTATED        2      1      1
  4P GAIN WILD-TYPE     38     76     41
D4V2, multiclass
        clus
vv       4P GAIN MUTATED 4P GAIN WILD-TYPE
  CLUS_1               2                38
  CLUS_2               1                76
  CLUS_3               1                41
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4P GAIN MUTATED        3      0      0
  4P GAIN WILD-TYPE     51     53     24
D4V3, multiclass
        clus
vv       4P GAIN MUTATED 4P GAIN WILD-TYPE
  CLUS_1               3                51
  CLUS_2               0                53
  CLUS_3               0                24
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  4P GAIN MUTATED        0      0      0      3
  4P GAIN WILD-TYPE     20     41     18     49
D4V4, multiclass
        clus
vv       4P GAIN MUTATED 4P GAIN WILD-TYPE
  CLUS_1               0                20
  CLUS_2               0                41
  CLUS_3               0                18
  CLUS_4               3                49
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4P GAIN MUTATED        2      1      0
  4P GAIN WILD-TYPE     32     54     42
D4V5, multiclass
        clus
vv       4P GAIN MUTATED 4P GAIN WILD-TYPE
  CLUS_1               2                32
  CLUS_2               1                54
  CLUS_3               0                42
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4P GAIN MUTATED        0      0      3
  4P GAIN WILD-TYPE     32     43     53
D4V6, multiclass
        clus
vv       4P GAIN MUTATED 4P GAIN WILD-TYPE
  CLUS_1               0                32
  CLUS_2               0                43
  CLUS_3               3                53

Clustering(5) Variable = 4Q GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  4Q GAIN MUTATED        0      0      3      0      0      0
  4Q GAIN WILD-TYPE     23     24     54     46      7      2
D5V1, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4Q GAIN MUTATED        0      2      1
  4Q GAIN WILD-TYPE     40     75     41
D5V2, multiclass
        clus
vv       4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  CLUS_1               0                40
  CLUS_2               2                75
  CLUS_3               1                41
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4Q GAIN MUTATED        1      1      0
  4Q GAIN WILD-TYPE     53     52     24
D5V3, multiclass
[1] "Remove cluster labels:" "4Q GAIN MUTATED"       
clus
  4Q GAIN MUTATED 4Q GAIN WILD-TYPE 
                2               129 
       TCGA-P7-A5NY        TCGA-P8-A5KC        TCGA-P8-A5KD        TCGA-P8-A6RX 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-P8-A6RY        TCGA-PR-A5PG        TCGA-PR-A5PH        TCGA-QR-A6GO 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-QR-A6GR        TCGA-QR-A6GS        TCGA-QR-A6GT        TCGA-QR-A6GU 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-QR-A6GX        TCGA-QR-A6GY        TCGA-QR-A6GZ        TCGA-QR-A6H0 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-QR-A6H1        TCGA-QR-A6H2        TCGA-QR-A6H3        TCGA-QR-A6H5 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-QR-A6H6        TCGA-QR-A700        TCGA-QR-A702        TCGA-QR-A70C 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-QR-A70D        TCGA-QR-A70E        TCGA-QR-A70G        TCGA-QR-A70H 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-QR-A70I        TCGA-QR-A70J        TCGA-QR-A70K        TCGA-QR-A70N 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-QR-A70P        TCGA-QR-A70R        TCGA-QR-A70W        TCGA-QR-A70X 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-QR-A7IN        TCGA-QR-A7IP        TCGA-QT-A5XJ        TCGA-QT-A5XK 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-QT-A5XL        TCGA-QT-A5XM        TCGA-QT-A5XN        TCGA-QT-A5XO 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-QT-A5XP        TCGA-QT-A69Q        TCGA-QT-A7U0        TCGA-RM-A68T 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-RM-A68W        TCGA-RT-A6Y9        TCGA-RT-A6YA        TCGA-RT-A6YC 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-RW-A67V        TCGA-RW-A67W        TCGA-RW-A67X        TCGA-RW-A67Y 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-RW-A680        TCGA-RW-A681        TCGA-RW-A685        TCGA-RW-A686 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-RW-A689        TCGA-RW-A68A        TCGA-RW-A68B        TCGA-RW-A68C 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-RW-A68D        TCGA-RW-A68F        TCGA-RW-A68G        TCGA-RW-A7CZ 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-RW-A7D0        TCGA-RW-A8AZ        TCGA-RX-A8JQ        TCGA-S7-A7WL 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-S7-A7WM        TCGA-S7-A7WN        TCGA-S7-A7WO        TCGA-S7-A7WP 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-S7-A7WT        TCGA-S7-A7WU        TCGA-S7-A7WV        TCGA-S7-A7WW 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-S7-A7WX        TCGA-S7-A7X0        TCGA-SA-A6C2        TCGA-SP-A6QC 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-SP-A6QD        TCGA-SP-A6QF        TCGA-SP-A6QG        TCGA-SP-A6QK 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-SQ-A6I4        TCGA-SQ-A6I6        TCGA-SR-A6MP        TCGA-SR-A6MT 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-SR-A6MU        TCGA-SR-A6MV        TCGA-SR-A6MX        TCGA-SR-A6N0 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-TT-A6YJ        TCGA-TT-A6YK        TCGA-TT-A6YN        TCGA-TT-A6YO 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-W2-A7HA        TCGA-W2-A7HB        TCGA-W2-A7HC        TCGA-W2-A7HD 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-W2-A7HE        TCGA-WB-A80L        TCGA-WB-A80M        TCGA-WB-A80N 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-WB-A80O        TCGA-WB-A80Y        TCGA-WB-A814        TCGA-WB-A815 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-WB-A816        TCGA-WB-A817        TCGA-WB-A81D        TCGA-WB-A81E 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-WB-A81F        TCGA-WB-A81G        TCGA-WB-A81H        TCGA-WB-A81M 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-WB-A81N        TCGA-WB-A81P        TCGA-WB-A81Q        TCGA-WB-A81R 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-WB-A81W        TCGA-WB-A820        TCGA-WB-A821        TCGA-WB-A822 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-XG-A823 
"4Q GAIN WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  4Q GAIN MUTATED        0      1      0      1
  4Q GAIN WILD-TYPE     20     40     18     51
D5V4, multiclass
[1] "Remove cluster labels:" "4Q GAIN MUTATED"       
clus
  4Q GAIN MUTATED 4Q GAIN WILD-TYPE 
                2               129 
       TCGA-P7-A5NY        TCGA-P8-A5KC        TCGA-P8-A5KD        TCGA-P8-A6RX 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-P8-A6RY        TCGA-PR-A5PG        TCGA-PR-A5PH        TCGA-QR-A6GO 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-QR-A6GR        TCGA-QR-A6GS        TCGA-QR-A6GT        TCGA-QR-A6GU 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-QR-A6GX        TCGA-QR-A6GY        TCGA-QR-A6GZ        TCGA-QR-A6H0 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-QR-A6H1        TCGA-QR-A6H2        TCGA-QR-A6H3        TCGA-QR-A6H5 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-QR-A6H6        TCGA-QR-A700        TCGA-QR-A702        TCGA-QR-A70C 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-QR-A70D        TCGA-QR-A70E        TCGA-QR-A70G        TCGA-QR-A70H 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-QR-A70I        TCGA-QR-A70J        TCGA-QR-A70K        TCGA-QR-A70N 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-QR-A70P        TCGA-QR-A70R        TCGA-QR-A70W        TCGA-QR-A70X 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-QR-A7IN        TCGA-QR-A7IP        TCGA-QT-A5XJ        TCGA-QT-A5XK 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-QT-A5XL        TCGA-QT-A5XM        TCGA-QT-A5XN        TCGA-QT-A5XO 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-QT-A5XP        TCGA-QT-A69Q        TCGA-QT-A7U0        TCGA-RM-A68T 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-RM-A68W        TCGA-RT-A6Y9        TCGA-RT-A6YA        TCGA-RT-A6YC 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-RW-A67V        TCGA-RW-A67W        TCGA-RW-A67X        TCGA-RW-A67Y 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-RW-A680        TCGA-RW-A681        TCGA-RW-A685        TCGA-RW-A686 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-RW-A689        TCGA-RW-A68A        TCGA-RW-A68B        TCGA-RW-A68C 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-RW-A68D        TCGA-RW-A68F        TCGA-RW-A68G        TCGA-RW-A7CZ 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-RW-A7D0        TCGA-RW-A8AZ        TCGA-RX-A8JQ        TCGA-S7-A7WL 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-S7-A7WM        TCGA-S7-A7WN        TCGA-S7-A7WO        TCGA-S7-A7WP 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-S7-A7WT        TCGA-S7-A7WU        TCGA-S7-A7WV        TCGA-S7-A7WW 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-S7-A7WX        TCGA-S7-A7X0        TCGA-SA-A6C2        TCGA-SP-A6QC 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-SP-A6QD        TCGA-SP-A6QF        TCGA-SP-A6QG        TCGA-SP-A6QK 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-SQ-A6I4        TCGA-SQ-A6I6        TCGA-SR-A6MP        TCGA-SR-A6MT 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-SR-A6MU        TCGA-SR-A6MV        TCGA-SR-A6MX        TCGA-SR-A6N0 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-TT-A6YJ        TCGA-TT-A6YK        TCGA-TT-A6YN        TCGA-TT-A6YO 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-W2-A7HA        TCGA-W2-A7HB        TCGA-W2-A7HC        TCGA-W2-A7HD 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-W2-A7HE        TCGA-WB-A80L        TCGA-WB-A80M        TCGA-WB-A80N 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-WB-A80O        TCGA-WB-A80Y        TCGA-WB-A814        TCGA-WB-A815 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-WB-A816        TCGA-WB-A817        TCGA-WB-A81D        TCGA-WB-A81E 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-WB-A81F        TCGA-WB-A81G        TCGA-WB-A81H        TCGA-WB-A81M 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-WB-A81N        TCGA-WB-A81P        TCGA-WB-A81Q        TCGA-WB-A81R 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-WB-A81W        TCGA-WB-A820        TCGA-WB-A821        TCGA-WB-A822 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-XG-A823 
"4Q GAIN WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4Q GAIN MUTATED        0      2      0
  4Q GAIN WILD-TYPE     34     53     42
D5V5, multiclass
[1] "Remove cluster labels:" "4Q GAIN MUTATED"       
clus
  4Q GAIN MUTATED 4Q GAIN WILD-TYPE 
                2               129 
       TCGA-P7-A5NY        TCGA-P8-A5KC        TCGA-P8-A5KD        TCGA-P8-A6RX 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-P8-A6RY        TCGA-PR-A5PG        TCGA-PR-A5PH        TCGA-QR-A6GO 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-QR-A6GR        TCGA-QR-A6GS        TCGA-QR-A6GT        TCGA-QR-A6GU 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-QR-A6GX        TCGA-QR-A6GY        TCGA-QR-A6GZ        TCGA-QR-A6H0 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-QR-A6H1        TCGA-QR-A6H2        TCGA-QR-A6H3        TCGA-QR-A6H5 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-QR-A6H6        TCGA-QR-A700        TCGA-QR-A702        TCGA-QR-A70C 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-QR-A70D        TCGA-QR-A70E        TCGA-QR-A70G        TCGA-QR-A70H 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-QR-A70I        TCGA-QR-A70J        TCGA-QR-A70K        TCGA-QR-A70N 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-QR-A70P        TCGA-QR-A70R        TCGA-QR-A70W        TCGA-QR-A70X 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-QR-A7IN        TCGA-QR-A7IP        TCGA-QT-A5XJ        TCGA-QT-A5XK 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-QT-A5XL        TCGA-QT-A5XM        TCGA-QT-A5XN        TCGA-QT-A5XO 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-QT-A5XP        TCGA-QT-A69Q        TCGA-QT-A7U0        TCGA-RM-A68T 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-RM-A68W        TCGA-RT-A6Y9        TCGA-RT-A6YA        TCGA-RT-A6YC 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-RW-A67V        TCGA-RW-A67W        TCGA-RW-A67X        TCGA-RW-A67Y 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-RW-A680        TCGA-RW-A681        TCGA-RW-A685        TCGA-RW-A686 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-RW-A689        TCGA-RW-A68A        TCGA-RW-A68B        TCGA-RW-A68C 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-RW-A68D        TCGA-RW-A68F        TCGA-RW-A68G        TCGA-RW-A7CZ 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-RW-A7D0        TCGA-RW-A8AZ        TCGA-RX-A8JQ        TCGA-S7-A7WL 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-S7-A7WM        TCGA-S7-A7WN        TCGA-S7-A7WO        TCGA-S7-A7WP 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-S7-A7WT        TCGA-S7-A7WU        TCGA-S7-A7WV        TCGA-S7-A7WW 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-S7-A7WX        TCGA-S7-A7X0        TCGA-SA-A6C2        TCGA-SP-A6QC 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-SP-A6QD        TCGA-SP-A6QF        TCGA-SP-A6QG        TCGA-SP-A6QK 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-SQ-A6I4        TCGA-SQ-A6I6        TCGA-SR-A6MP        TCGA-SR-A6MT 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-SR-A6MU        TCGA-SR-A6MV        TCGA-SR-A6MX        TCGA-SR-A6N0 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-TT-A6YJ        TCGA-TT-A6YK        TCGA-TT-A6YN        TCGA-TT-A6YO 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-W2-A7HA        TCGA-W2-A7HB        TCGA-W2-A7HC        TCGA-W2-A7HD 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-W2-A7HE        TCGA-WB-A80L        TCGA-WB-A80M        TCGA-WB-A80N 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-WB-A80O        TCGA-WB-A80Y        TCGA-WB-A814        TCGA-WB-A815 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-WB-A816        TCGA-WB-A817        TCGA-WB-A81D        TCGA-WB-A81E 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-WB-A81F        TCGA-WB-A81G        TCGA-WB-A81H        TCGA-WB-A81M 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-WB-A81N        TCGA-WB-A81P        TCGA-WB-A81Q        TCGA-WB-A81R 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-WB-A81W        TCGA-WB-A820        TCGA-WB-A821        TCGA-WB-A822 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-XG-A823 
"4Q GAIN WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4Q GAIN MUTATED        0      0      2
  4Q GAIN WILD-TYPE     32     43     54
D5V6, multiclass
[1] "Remove cluster labels:" "4Q GAIN MUTATED"       
clus
  4Q GAIN MUTATED 4Q GAIN WILD-TYPE 
                2               129 
       TCGA-P7-A5NY        TCGA-P8-A5KC        TCGA-P8-A5KD        TCGA-P8-A6RX 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-P8-A6RY        TCGA-PR-A5PG        TCGA-PR-A5PH        TCGA-QR-A6GO 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-QR-A6GR        TCGA-QR-A6GS        TCGA-QR-A6GT        TCGA-QR-A6GU 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-QR-A6GX        TCGA-QR-A6GY        TCGA-QR-A6GZ        TCGA-QR-A6H0 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-QR-A6H1        TCGA-QR-A6H2        TCGA-QR-A6H3        TCGA-QR-A6H5 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-QR-A6H6        TCGA-QR-A700        TCGA-QR-A702        TCGA-QR-A70C 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-QR-A70D        TCGA-QR-A70E        TCGA-QR-A70G        TCGA-QR-A70H 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-QR-A70I        TCGA-QR-A70J        TCGA-QR-A70K        TCGA-QR-A70N 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-QR-A70P        TCGA-QR-A70R        TCGA-QR-A70W        TCGA-QR-A70X 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-QR-A7IN        TCGA-QR-A7IP        TCGA-QT-A5XJ        TCGA-QT-A5XK 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-QT-A5XL        TCGA-QT-A5XM        TCGA-QT-A5XN        TCGA-QT-A5XO 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-QT-A5XP        TCGA-QT-A69Q        TCGA-QT-A7U0        TCGA-RM-A68T 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-RM-A68W        TCGA-RT-A6Y9        TCGA-RT-A6YA        TCGA-RT-A6YC 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-RW-A67V        TCGA-RW-A67W        TCGA-RW-A67X        TCGA-RW-A67Y 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-RW-A680        TCGA-RW-A681        TCGA-RW-A685        TCGA-RW-A686 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-RW-A689        TCGA-RW-A68A        TCGA-RW-A68B        TCGA-RW-A68C 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-RW-A68D        TCGA-RW-A68F        TCGA-RW-A68G        TCGA-RW-A7CZ 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-RW-A7D0        TCGA-RW-A8AZ        TCGA-RX-A8JQ        TCGA-S7-A7WL 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-S7-A7WM        TCGA-S7-A7WN        TCGA-S7-A7WO        TCGA-S7-A7WP 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-S7-A7WT        TCGA-S7-A7WU        TCGA-S7-A7WV        TCGA-S7-A7WW 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-S7-A7WX        TCGA-S7-A7X0        TCGA-SA-A6C2        TCGA-SP-A6QC 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-SP-A6QD        TCGA-SP-A6QF        TCGA-SP-A6QG        TCGA-SP-A6QK 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-SQ-A6I4        TCGA-SQ-A6I6        TCGA-SR-A6MP        TCGA-SR-A6MT 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-SR-A6MU        TCGA-SR-A6MV        TCGA-SR-A6MX        TCGA-SR-A6N0 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-TT-A6YJ        TCGA-TT-A6YK        TCGA-TT-A6YN        TCGA-TT-A6YO 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-W2-A7HA        TCGA-W2-A7HB        TCGA-W2-A7HC        TCGA-W2-A7HD 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-W2-A7HE        TCGA-WB-A80L        TCGA-WB-A80M        TCGA-WB-A80N 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-WB-A80O        TCGA-WB-A80Y        TCGA-WB-A814        TCGA-WB-A815 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-WB-A816        TCGA-WB-A817        TCGA-WB-A81D        TCGA-WB-A81E 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-WB-A81F        TCGA-WB-A81G        TCGA-WB-A81H        TCGA-WB-A81M 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-WB-A81N        TCGA-WB-A81P        TCGA-WB-A81Q        TCGA-WB-A81R 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-WB-A81W        TCGA-WB-A820        TCGA-WB-A821        TCGA-WB-A822 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-XG-A823 
"4Q GAIN WILD-TYPE" 

Clustering(6) Variable = 5P GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  5P GAIN MUTATED        5      1      2      3      0      0
  5P GAIN WILD-TYPE     18     23     55     43      7      2
D6V1, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5P GAIN MUTATED        2      4      5
  5P GAIN WILD-TYPE     38     73     37
D6V2, multiclass
        clus
vv       5P GAIN MUTATED 5P GAIN WILD-TYPE
  CLUS_1               2                38
  CLUS_2               4                73
  CLUS_3               5                37
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5P GAIN MUTATED        5      2      1
  5P GAIN WILD-TYPE     49     51     23
D6V3, multiclass
        clus
vv       5P GAIN MUTATED 5P GAIN WILD-TYPE
  CLUS_1               5                49
  CLUS_2               2                51
  CLUS_3               1                23
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  5P GAIN MUTATED        1      1      1      5
  5P GAIN WILD-TYPE     19     40     17     47
D6V4, multiclass
        clus
vv       5P GAIN MUTATED 5P GAIN WILD-TYPE
  CLUS_1               1                19
  CLUS_2               1                40
  CLUS_3               1                17
  CLUS_4               5                47
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5P GAIN MUTATED        2      3      3
  5P GAIN WILD-TYPE     32     52     39
D6V5, multiclass
        clus
vv       5P GAIN MUTATED 5P GAIN WILD-TYPE
  CLUS_1               2                32
  CLUS_2               3                52
  CLUS_3               3                39
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5P GAIN MUTATED        2      2      4
  5P GAIN WILD-TYPE     30     41     52
D6V6, multiclass
        clus
vv       5P GAIN MUTATED 5P GAIN WILD-TYPE
  CLUS_1               2                30
  CLUS_2               2                41
  CLUS_3               4                52

Clustering(7) Variable = 5Q GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  5Q GAIN MUTATED        3      0      1      3      0      0
  5Q GAIN WILD-TYPE     20     24     56     43      7      2
D7V1, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5Q GAIN MUTATED        2      0      5
  5Q GAIN WILD-TYPE     38     77     37
D7V2, multiclass
        clus
vv       5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  CLUS_1               2                38
  CLUS_2               0                77
  CLUS_3               5                37
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5Q GAIN MUTATED        4      0      1
  5Q GAIN WILD-TYPE     50     53     23
D7V3, multiclass
        clus
vv       5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  CLUS_1               4                50
  CLUS_2               0                53
  CLUS_3               1                23
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  5Q GAIN MUTATED        1      0      0      4
  5Q GAIN WILD-TYPE     19     41     18     48
D7V4, multiclass
        clus
vv       5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  CLUS_1               1                19
  CLUS_2               0                41
  CLUS_3               0                18
  CLUS_4               4                48
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5Q GAIN MUTATED        2      1      2
  5Q GAIN WILD-TYPE     32     54     40
D7V5, multiclass
        clus
vv       5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  CLUS_1               2                32
  CLUS_2               1                54
  CLUS_3               2                40
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5Q GAIN MUTATED        1      0      4
  5Q GAIN WILD-TYPE     31     43     52
D7V6, multiclass
        clus
vv       5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  CLUS_1               1                31
  CLUS_2               0                43
  CLUS_3               4                52

Clustering(8) Variable = 6P GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  6P GAIN MUTATED        2      0      5      6      0      0
  6P GAIN WILD-TYPE     21     24     52     40      7      2
D8V1, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6P GAIN MUTATED        2      5      6
  6P GAIN WILD-TYPE     38     72     36
D8V2, multiclass
        clus
vv       6P GAIN MUTATED 6P GAIN WILD-TYPE
  CLUS_1               2                38
  CLUS_2               5                72
  CLUS_3               6                36
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6P GAIN MUTATED        5      4      1
  6P GAIN WILD-TYPE     49     49     23
D8V3, multiclass
        clus
vv       6P GAIN MUTATED 6P GAIN WILD-TYPE
  CLUS_1               5                49
  CLUS_2               4                49
  CLUS_3               1                23
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  6P GAIN MUTATED        0      4      1      5
  6P GAIN WILD-TYPE     20     37     17     47
D8V4, multiclass
        clus
vv       6P GAIN MUTATED 6P GAIN WILD-TYPE
  CLUS_1               0                20
  CLUS_2               4                37
  CLUS_3               1                17
  CLUS_4               5                47
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6P GAIN MUTATED        4      4      2
  6P GAIN WILD-TYPE     30     51     40
D8V5, multiclass
        clus
vv       6P GAIN MUTATED 6P GAIN WILD-TYPE
  CLUS_1               4                30
  CLUS_2               4                51
  CLUS_3               2                40
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6P GAIN MUTATED        1      4      5
  6P GAIN WILD-TYPE     31     39     51
D8V6, multiclass
        clus
vv       6P GAIN MUTATED 6P GAIN WILD-TYPE
  CLUS_1               1                31
  CLUS_2               4                39
  CLUS_3               5                51

Clustering(9) Variable = 6Q GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  6Q GAIN MUTATED        2      0      0      5      0      0
  6Q GAIN WILD-TYPE     21     24     57     41      7      2
D9V1, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6Q GAIN MUTATED        1      0      6
  6Q GAIN WILD-TYPE     39     77     36
D9V2, multiclass
        clus
vv       6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  CLUS_1               1                39
  CLUS_2               0                77
  CLUS_3               6                36
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6Q GAIN MUTATED        4      0      1
  6Q GAIN WILD-TYPE     50     53     23
D9V3, multiclass
        clus
vv       6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  CLUS_1               4                50
  CLUS_2               0                53
  CLUS_3               1                23
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  6Q GAIN MUTATED        0      0      1      4
  6Q GAIN WILD-TYPE     20     41     17     48
D9V4, multiclass
        clus
vv       6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  CLUS_1               0                20
  CLUS_2               0                41
  CLUS_3               1                17
  CLUS_4               4                48
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6Q GAIN MUTATED        3      0      2
  6Q GAIN WILD-TYPE     31     55     40
D9V5, multiclass
        clus
vv       6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  CLUS_1               3                31
  CLUS_2               0                55
  CLUS_3               2                40
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6Q GAIN MUTATED        1      0      4
  6Q GAIN WILD-TYPE     31     43     52
D9V6, multiclass
        clus
vv       6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  CLUS_1               1                31
  CLUS_2               0                43
  CLUS_3               4                52

Clustering(10) Variable = 7P GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  7P GAIN MUTATED        3      6      3     13      1      0
  7P GAIN WILD-TYPE     20     18     54     33      6      2
D10V1, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7P GAIN MUTATED        8      8     10
  7P GAIN WILD-TYPE     32     69     32
D10V2, multiclass
        clus
vv       7P GAIN MUTATED 7P GAIN WILD-TYPE
  CLUS_1               8                32
  CLUS_2               8                69
  CLUS_3              10                32
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7P GAIN MUTATED       10      7      6
  7P GAIN WILD-TYPE     44     46     18
D10V3, multiclass
        clus
vv       7P GAIN MUTATED 7P GAIN WILD-TYPE
  CLUS_1              10                44
  CLUS_2               7                46
  CLUS_3               6                18
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  7P GAIN MUTATED        3      5      6      9
  7P GAIN WILD-TYPE     17     36     12     43
D10V4, multiclass
        clus
vv       7P GAIN MUTATED 7P GAIN WILD-TYPE
  CLUS_1               3                17
  CLUS_2               5                36
  CLUS_3               6                12
  CLUS_4               9                43
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7P GAIN MUTATED        8      6      9
  7P GAIN WILD-TYPE     26     49     33
D10V5, multiclass
        clus
vv       7P GAIN MUTATED 7P GAIN WILD-TYPE
  CLUS_1               8                26
  CLUS_2               6                49
  CLUS_3               9                33
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7P GAIN MUTATED        9      5      9
  7P GAIN WILD-TYPE     23     38     47
D10V6, multiclass
        clus
vv       7P GAIN MUTATED 7P GAIN WILD-TYPE
  CLUS_1               9                23
  CLUS_2               5                38
  CLUS_3               9                47

Clustering(11) Variable = 7Q GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  7Q GAIN MUTATED        3      3      1     13      1      0
  7Q GAIN WILD-TYPE     20     21     56     33      6      2
D11V1, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7Q GAIN MUTATED        8      4      9
  7Q GAIN WILD-TYPE     32     73     33
D11V2, multiclass
        clus
vv       7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  CLUS_1               8                32
  CLUS_2               4                73
  CLUS_3               9                33
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7Q GAIN MUTATED        8      5      5
  7Q GAIN WILD-TYPE     46     48     19
D11V3, multiclass
        clus
vv       7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  CLUS_1               8                46
  CLUS_2               5                48
  CLUS_3               5                19
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  7Q GAIN MUTATED        3      3      3      9
  7Q GAIN WILD-TYPE     17     38     15     43
D11V4, multiclass
        clus
vv       7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  CLUS_1               3                17
  CLUS_2               3                38
  CLUS_3               3                15
  CLUS_4               9                43
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7Q GAIN MUTATED        8      3      7
  7Q GAIN WILD-TYPE     26     52     35
D11V5, multiclass
        clus
vv       7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  CLUS_1               8                26
  CLUS_2               3                52
  CLUS_3               7                35
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7Q GAIN MUTATED        6      3      9
  7Q GAIN WILD-TYPE     26     40     47
D11V6, multiclass
        clus
vv       7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  CLUS_1               6                26
  CLUS_2               3                40
  CLUS_3               9                47

Clustering(12) Variable = 8P GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  8P GAIN MUTATED        2      0      0      7      1      0
  8P GAIN WILD-TYPE     21     24     57     39      6      2
D12V1, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8P GAIN MUTATED        4      3      3
  8P GAIN WILD-TYPE     36     74     39
D12V2, multiclass
        clus
vv       8P GAIN MUTATED 8P GAIN WILD-TYPE
  CLUS_1               4                36
  CLUS_2               3                74
  CLUS_3               3                39
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8P GAIN MUTATED        4      2      3
  8P GAIN WILD-TYPE     50     51     21
D12V3, multiclass
        clus
vv       8P GAIN MUTATED 8P GAIN WILD-TYPE
  CLUS_1               4                50
  CLUS_2               2                51
  CLUS_3               3                21
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  8P GAIN MUTATED        3      1      1      4
  8P GAIN WILD-TYPE     17     40     17     48
D12V4, multiclass
        clus
vv       8P GAIN MUTATED 8P GAIN WILD-TYPE
  CLUS_1               3                17
  CLUS_2               1                40
  CLUS_3               1                17
  CLUS_4               4                48
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8P GAIN MUTATED        4      1      4
  8P GAIN WILD-TYPE     30     54     38
D12V5, multiclass
        clus
vv       8P GAIN MUTATED 8P GAIN WILD-TYPE
  CLUS_1               4                30
  CLUS_2               1                54
  CLUS_3               4                38
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8P GAIN MUTATED        4      1      4
  8P GAIN WILD-TYPE     28     42     52
D12V6, multiclass
        clus
vv       8P GAIN MUTATED 8P GAIN WILD-TYPE
  CLUS_1               4                28
  CLUS_2               1                42
  CLUS_3               4                52

Clustering(13) Variable = 8Q GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  8Q GAIN MUTATED        3      0      2      7      1      0
  8Q GAIN WILD-TYPE     20     24     55     39      6      2
D13V1, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8Q GAIN MUTATED        4      5      4
  8Q GAIN WILD-TYPE     36     72     38
D13V2, multiclass
        clus
vv       8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  CLUS_1               4                36
  CLUS_2               5                72
  CLUS_3               4                38
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8Q GAIN MUTATED        5      3      4
  8Q GAIN WILD-TYPE     49     50     20
D13V3, multiclass
        clus
vv       8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  CLUS_1               5                49
  CLUS_2               3                50
  CLUS_3               4                20
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  8Q GAIN MUTATED        4      2      2      4
  8Q GAIN WILD-TYPE     16     39     16     48
D13V4, multiclass
        clus
vv       8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  CLUS_1               4                16
  CLUS_2               2                39
  CLUS_3               2                16
  CLUS_4               4                48
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8Q GAIN MUTATED        4      2      6
  8Q GAIN WILD-TYPE     30     53     36
D13V5, multiclass
        clus
vv       8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  CLUS_1               4                30
  CLUS_2               2                53
  CLUS_3               6                36
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8Q GAIN MUTATED        5      2      5
  8Q GAIN WILD-TYPE     27     41     51
D13V6, multiclass
        clus
vv       8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  CLUS_1               5                27
  CLUS_2               2                41
  CLUS_3               5                51

Clustering(14) Variable = 9P GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  9P GAIN MUTATED        0      0      0      3      0      0
  9P GAIN WILD-TYPE     23     24     57     43      7      2
D14V1, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9P GAIN MUTATED        1      0      2
  9P GAIN WILD-TYPE     39     77     40
D14V2, multiclass
        clus
vv       9P GAIN MUTATED 9P GAIN WILD-TYPE
  CLUS_1               1                39
  CLUS_2               0                77
  CLUS_3               2                40
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9P GAIN MUTATED        2      0      1
  9P GAIN WILD-TYPE     52     53     23
D14V3, multiclass
        clus
vv       9P GAIN MUTATED 9P GAIN WILD-TYPE
  CLUS_1               2                52
  CLUS_2               0                53
  CLUS_3               1                23
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  9P GAIN MUTATED        0      0      1      2
  9P GAIN WILD-TYPE     20     41     17     50
D14V4, multiclass
        clus
vv       9P GAIN MUTATED 9P GAIN WILD-TYPE
  CLUS_1               0                20
  CLUS_2               0                41
  CLUS_3               1                17
  CLUS_4               2                50
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9P GAIN MUTATED        2      0      1
  9P GAIN WILD-TYPE     32     55     41
D14V5, multiclass
        clus
vv       9P GAIN MUTATED 9P GAIN WILD-TYPE
  CLUS_1               2                32
  CLUS_2               0                55
  CLUS_3               1                41
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9P GAIN MUTATED        1      0      2
  9P GAIN WILD-TYPE     31     43     54
D14V6, multiclass
        clus
vv       9P GAIN MUTATED 9P GAIN WILD-TYPE
  CLUS_1               1                31
  CLUS_2               0                43
  CLUS_3               2                54

Clustering(15) Variable = 9Q GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  9Q GAIN MUTATED        0      0      0      3      0      0
  9Q GAIN WILD-TYPE     23     24     57     43      7      2
D15V1, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9Q GAIN MUTATED        1      0      2
  9Q GAIN WILD-TYPE     39     77     40
D15V2, multiclass
        clus
vv       9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  CLUS_1               1                39
  CLUS_2               0                77
  CLUS_3               2                40
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9Q GAIN MUTATED        2      0      1
  9Q GAIN WILD-TYPE     52     53     23
D15V3, multiclass
        clus
vv       9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  CLUS_1               2                52
  CLUS_2               0                53
  CLUS_3               1                23
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  9Q GAIN MUTATED        0      0      1      2
  9Q GAIN WILD-TYPE     20     41     17     50
D15V4, multiclass
        clus
vv       9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  CLUS_1               0                20
  CLUS_2               0                41
  CLUS_3               1                17
  CLUS_4               2                50
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9Q GAIN MUTATED        2      0      1
  9Q GAIN WILD-TYPE     32     55     41
D15V5, multiclass
        clus
vv       9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  CLUS_1               2                32
  CLUS_2               0                55
  CLUS_3               1                41
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9Q GAIN MUTATED        1      0      2
  9Q GAIN WILD-TYPE     31     43     54
D15V6, multiclass
        clus
vv       9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  CLUS_1               1                31
  CLUS_2               0                43
  CLUS_3               2                54

Clustering(16) Variable = 10P GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  10P GAIN MUTATED        3      1      4      4      0      0
  10P GAIN WILD-TYPE     20     23     53     42      7      2
D16V1, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10P GAIN MUTATED        2      3      7
  10P GAIN WILD-TYPE     38     74     35
D16V2, multiclass
        clus
vv       10P GAIN MUTATED 10P GAIN WILD-TYPE
  CLUS_1                2                 38
  CLUS_2                3                 74
  CLUS_3                7                 35
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10P GAIN MUTATED        3      4      2
  10P GAIN WILD-TYPE     51     49     22
D16V3, multiclass
        clus
vv       10P GAIN MUTATED 10P GAIN WILD-TYPE
  CLUS_1                3                 51
  CLUS_2                4                 49
  CLUS_3                2                 22
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  10P GAIN MUTATED        1      3      1      4
  10P GAIN WILD-TYPE     19     38     17     48
D16V4, multiclass
        clus
vv       10P GAIN MUTATED 10P GAIN WILD-TYPE
  CLUS_1                1                 19
  CLUS_2                3                 38
  CLUS_3                1                 17
  CLUS_4                4                 48
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10P GAIN MUTATED        3      3      3
  10P GAIN WILD-TYPE     31     52     39
D16V5, multiclass
        clus
vv       10P GAIN MUTATED 10P GAIN WILD-TYPE
  CLUS_1                3                 31
  CLUS_2                3                 52
  CLUS_3                3                 39
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10P GAIN MUTATED        2      2      5
  10P GAIN WILD-TYPE     30     41     51
D16V6, multiclass
        clus
vv       10P GAIN MUTATED 10P GAIN WILD-TYPE
  CLUS_1                2                 30
  CLUS_2                2                 41
  CLUS_3                5                 51

Clustering(17) Variable = 10Q GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  10Q GAIN MUTATED        3      0      4      3      0      0
  10Q GAIN WILD-TYPE     20     24     53     43      7      2
D17V1, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10Q GAIN MUTATED        2      4      4
  10Q GAIN WILD-TYPE     38     73     38
D17V2, multiclass
        clus
vv       10Q GAIN MUTATED 10Q GAIN WILD-TYPE
  CLUS_1                2                 38
  CLUS_2                4                 73
  CLUS_3                4                 38
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10Q GAIN MUTATED        2      5      1
  10Q GAIN WILD-TYPE     52     48     23
D17V3, multiclass
        clus
vv       10Q GAIN MUTATED 10Q GAIN WILD-TYPE
  CLUS_1                2                 52
  CLUS_2                5                 48
  CLUS_3                1                 23
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  10Q GAIN MUTATED        1      4      0      3
  10Q GAIN WILD-TYPE     19     37     18     49
D17V4, multiclass
        clus
vv       10Q GAIN MUTATED 10Q GAIN WILD-TYPE
  CLUS_1                1                 19
  CLUS_2                4                 37
  CLUS_3                0                 18
  CLUS_4                3                 49
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10Q GAIN MUTATED        3      4      1
  10Q GAIN WILD-TYPE     31     51     41
D17V5, multiclass
        clus
vv       10Q GAIN MUTATED 10Q GAIN WILD-TYPE
  CLUS_1                3                 31
  CLUS_2                4                 51
  CLUS_3                1                 41
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10Q GAIN MUTATED        1      3      4
  10Q GAIN WILD-TYPE     31     40     52
D17V6, multiclass
        clus
vv       10Q GAIN MUTATED 10Q GAIN WILD-TYPE
  CLUS_1                1                 31
  CLUS_2                3                 40
  CLUS_3                4                 52

Clustering(18) Variable = 11P GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  11P GAIN MUTATED        1      0      3      0      0      0
  11P GAIN WILD-TYPE     22     24     54     46      7      2
D18V1, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11P GAIN MUTATED        0      3      1
  11P GAIN WILD-TYPE     40     74     41
D18V2, multiclass
        clus
vv       11P GAIN MUTATED 11P GAIN WILD-TYPE
  CLUS_1                0                 40
  CLUS_2                3                 74
  CLUS_3                1                 41
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11P GAIN MUTATED        0      3      0
  11P GAIN WILD-TYPE     54     50     24
D18V3, multiclass
        clus
vv       11P GAIN MUTATED 11P GAIN WILD-TYPE
  CLUS_1                0                 54
  CLUS_2                3                 50
  CLUS_3                0                 24
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  11P GAIN MUTATED        0      3      0      0
  11P GAIN WILD-TYPE     20     38     18     52
D18V4, multiclass
        clus
vv       11P GAIN MUTATED 11P GAIN WILD-TYPE
  CLUS_1                0                 20
  CLUS_2                3                 38
  CLUS_3                0                 18
  CLUS_4                0                 52
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11P GAIN MUTATED        0      3      0
  11P GAIN WILD-TYPE     34     52     42
D18V5, multiclass
        clus
vv       11P GAIN MUTATED 11P GAIN WILD-TYPE
  CLUS_1                0                 34
  CLUS_2                3                 52
  CLUS_3                0                 42
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11P GAIN MUTATED        0      3      0
  11P GAIN WILD-TYPE     32     40     56
D18V6, multiclass
        clus
vv       11P GAIN MUTATED 11P GAIN WILD-TYPE
  CLUS_1                0                 32
  CLUS_2                3                 40
  CLUS_3                0                 56

Clustering(19) Variable = 12P GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  12P GAIN MUTATED        3      0      0      8      0      0
  12P GAIN WILD-TYPE     20     24     57     38      7      2
D19V1, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12P GAIN MUTATED        4      1      6
  12P GAIN WILD-TYPE     36     76     36
D19V2, multiclass
        clus
vv       12P GAIN MUTATED 12P GAIN WILD-TYPE
  CLUS_1                4                 36
  CLUS_2                1                 76
  CLUS_3                6                 36
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12P GAIN MUTATED        6      2      0
  12P GAIN WILD-TYPE     48     51     24
D19V3, multiclass
        clus
vv       12P GAIN MUTATED 12P GAIN WILD-TYPE
  CLUS_1                6                 48
  CLUS_2                2                 51
  CLUS_3                0                 24
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  12P GAIN MUTATED        0      1      0      7
  12P GAIN WILD-TYPE     20     40     18     45
D19V4, multiclass
        clus
vv       12P GAIN MUTATED 12P GAIN WILD-TYPE
  CLUS_1                0                 20
  CLUS_2                1                 40
  CLUS_3                0                 18
  CLUS_4                7                 45
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12P GAIN MUTATED        7      0      1
  12P GAIN WILD-TYPE     27     55     41
D19V5, multiclass
        clus
vv       12P GAIN MUTATED 12P GAIN WILD-TYPE
  CLUS_1                7                 27
  CLUS_2                0                 55
  CLUS_3                1                 41
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12P GAIN MUTATED        0      1      7
  12P GAIN WILD-TYPE     32     42     49
D19V6, multiclass
        clus
vv       12P GAIN MUTATED 12P GAIN WILD-TYPE
  CLUS_1                0                 32
  CLUS_2                1                 42
  CLUS_3                7                 49

Clustering(20) Variable = 12Q GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  12Q GAIN MUTATED        3      0      2      8      0      0
  12Q GAIN WILD-TYPE     20     24     55     38      7      2
D20V1, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12Q GAIN MUTATED        4      3      6
  12Q GAIN WILD-TYPE     36     74     36
D20V2, multiclass
        clus
vv       12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  CLUS_1                4                 36
  CLUS_2                3                 74
  CLUS_3                6                 36
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12Q GAIN MUTATED        6      4      0
  12Q GAIN WILD-TYPE     48     49     24
D20V3, multiclass
        clus
vv       12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  CLUS_1                6                 48
  CLUS_2                4                 49
  CLUS_3                0                 24
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  12Q GAIN MUTATED        0      3      0      7
  12Q GAIN WILD-TYPE     20     38     18     45
D20V4, multiclass
        clus
vv       12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  CLUS_1                0                 20
  CLUS_2                3                 38
  CLUS_3                0                 18
  CLUS_4                7                 45
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12Q GAIN MUTATED        7      2      1
  12Q GAIN WILD-TYPE     27     53     41
D20V5, multiclass
        clus
vv       12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  CLUS_1                7                 27
  CLUS_2                2                 53
  CLUS_3                1                 41
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12Q GAIN MUTATED        0      3      7
  12Q GAIN WILD-TYPE     32     40     49
D20V6, multiclass
        clus
vv       12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  CLUS_1                0                 32
  CLUS_2                3                 40
  CLUS_3                7                 49

Clustering(21) Variable = 13Q GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  13Q GAIN MUTATED        0      0      0      9      0      0
  13Q GAIN WILD-TYPE     23     24     57     37      7      2
D21V1, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  13Q GAIN MUTATED        5      1      3
  13Q GAIN WILD-TYPE     35     76     39
D21V2, multiclass
        clus
vv       13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  CLUS_1                5                 35
  CLUS_2                1                 76
  CLUS_3                3                 39
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  13Q GAIN MUTATED        6      1      1
  13Q GAIN WILD-TYPE     48     52     23
D21V3, multiclass
        clus
vv       13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  CLUS_1                6                 48
  CLUS_2                1                 52
  CLUS_3                1                 23
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  13Q GAIN MUTATED        1      0      1      6
  13Q GAIN WILD-TYPE     19     41     17     46
D21V4, multiclass
        clus
vv       13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  CLUS_1                1                 19
  CLUS_2                0                 41
  CLUS_3                1                 17
  CLUS_4                6                 46
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  13Q GAIN MUTATED        6      1      1
  13Q GAIN WILD-TYPE     28     54     41
D21V5, multiclass
        clus
vv       13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  CLUS_1                6                 28
  CLUS_2                1                 54
  CLUS_3                1                 41
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  13Q GAIN MUTATED        2      0      6
  13Q GAIN WILD-TYPE     30     43     50
D21V6, multiclass
        clus
vv       13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  CLUS_1                2                 30
  CLUS_2                0                 43
  CLUS_3                6                 50

Clustering(22) Variable = 14Q GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  14Q GAIN MUTATED        0      0      1      3      0      0
  14Q GAIN WILD-TYPE     23     24     56     43      7      2
D22V1, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  14Q GAIN MUTATED        2      1      1
  14Q GAIN WILD-TYPE     38     76     41
D22V2, multiclass
        clus
vv       14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  CLUS_1                2                 38
  CLUS_2                1                 76
  CLUS_3                1                 41
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  14Q GAIN MUTATED        2      1      1
  14Q GAIN WILD-TYPE     52     52     23
D22V3, multiclass
        clus
vv       14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  CLUS_1                2                 52
  CLUS_2                1                 52
  CLUS_3                1                 23
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  14Q GAIN MUTATED        0      1      0      3
  14Q GAIN WILD-TYPE     20     40     18     49
D22V4, multiclass
        clus
vv       14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  CLUS_1                0                 20
  CLUS_2                1                 40
  CLUS_3                0                 18
  CLUS_4                3                 49
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  14Q GAIN MUTATED        3      1      0
  14Q GAIN WILD-TYPE     31     54     42
D22V5, multiclass
        clus
vv       14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  CLUS_1                3                 31
  CLUS_2                1                 54
  CLUS_3                0                 42
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  14Q GAIN MUTATED        0      1      3
  14Q GAIN WILD-TYPE     32     42     53
D22V6, multiclass
        clus
vv       14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  CLUS_1                0                 32
  CLUS_2                1                 42
  CLUS_3                3                 53

Clustering(23) Variable = 15Q GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  15Q GAIN MUTATED        2      2      2      8      0      0
  15Q GAIN WILD-TYPE     21     22     55     38      7      2
D23V1, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  15Q GAIN MUTATED        3      3      8
  15Q GAIN WILD-TYPE     37     74     34
D23V2, multiclass
        clus
vv       15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  CLUS_1                3                 37
  CLUS_2                3                 74
  CLUS_3                8                 34
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  15Q GAIN MUTATED        4      4      2
  15Q GAIN WILD-TYPE     50     49     22
D23V3, multiclass
        clus
vv       15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  CLUS_1                4                 50
  CLUS_2                4                 49
  CLUS_3                2                 22
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  15Q GAIN MUTATED        1      3      1      5
  15Q GAIN WILD-TYPE     19     38     17     47
D23V4, multiclass
        clus
vv       15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  CLUS_1                1                 19
  CLUS_2                3                 38
  CLUS_3                1                 17
  CLUS_4                5                 47
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  15Q GAIN MUTATED        4      3      3
  15Q GAIN WILD-TYPE     30     52     39
D23V5, multiclass
        clus
vv       15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  CLUS_1                4                 30
  CLUS_2                3                 52
  CLUS_3                3                 39
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  15Q GAIN MUTATED        2      3      5
  15Q GAIN WILD-TYPE     30     40     51
D23V6, multiclass
        clus
vv       15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  CLUS_1                2                 30
  CLUS_2                3                 40
  CLUS_3                5                 51

Clustering(24) Variable = 16P GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  16P GAIN MUTATED        3      1      0      2      0      0
  16P GAIN WILD-TYPE     20     23     57     44      7      2
D24V1, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16P GAIN MUTATED        1      2      3
  16P GAIN WILD-TYPE     39     75     39
D24V2, multiclass
        clus
vv       16P GAIN MUTATED 16P GAIN WILD-TYPE
  CLUS_1                1                 39
  CLUS_2                2                 75
  CLUS_3                3                 39
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16P GAIN MUTATED        1      3      0
  16P GAIN WILD-TYPE     53     50     24
D24V3, multiclass
        clus
vv       16P GAIN MUTATED 16P GAIN WILD-TYPE
  CLUS_1                1                 53
  CLUS_2                3                 50
  CLUS_3                0                 24
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  16P GAIN MUTATED        0      2      0      2
  16P GAIN WILD-TYPE     20     39     18     50
D24V4, multiclass
        clus
vv       16P GAIN MUTATED 16P GAIN WILD-TYPE
  CLUS_1                0                 20
  CLUS_2                2                 39
  CLUS_3                0                 18
  CLUS_4                2                 50
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16P GAIN MUTATED        2      0      2
  16P GAIN WILD-TYPE     32     55     40
D24V5, multiclass
        clus
vv       16P GAIN MUTATED 16P GAIN WILD-TYPE
  CLUS_1                2                 32
  CLUS_2                0                 55
  CLUS_3                2                 40
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16P GAIN MUTATED        0      2      2
  16P GAIN WILD-TYPE     32     41     54
D24V6, multiclass
        clus
vv       16P GAIN MUTATED 16P GAIN WILD-TYPE
  CLUS_1                0                 32
  CLUS_2                2                 41
  CLUS_3                2                 54

Clustering(25) Variable = 16Q GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  16Q GAIN MUTATED        3      0      1      2      0      0
  16Q GAIN WILD-TYPE     20     24     56     44      7      2
D25V1, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16Q GAIN MUTATED        1      3      2
  16Q GAIN WILD-TYPE     39     74     40
D25V2, multiclass
        clus
vv       16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  CLUS_1                1                 39
  CLUS_2                3                 74
  CLUS_3                2                 40
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16Q GAIN MUTATED        1      3      1
  16Q GAIN WILD-TYPE     53     50     23
D25V3, multiclass
        clus
vv       16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  CLUS_1                1                 53
  CLUS_2                3                 50
  CLUS_3                1                 23
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  16Q GAIN MUTATED        0      3      0      2
  16Q GAIN WILD-TYPE     20     38     18     50
D25V4, multiclass
        clus
vv       16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  CLUS_1                0                 20
  CLUS_2                3                 38
  CLUS_3                0                 18
  CLUS_4                2                 50
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16Q GAIN MUTATED        2      1      2
  16Q GAIN WILD-TYPE     32     54     40
D25V5, multiclass
        clus
vv       16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  CLUS_1                2                 32
  CLUS_2                1                 54
  CLUS_3                2                 40
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16Q GAIN MUTATED        0      3      2
  16Q GAIN WILD-TYPE     32     40     54
D25V6, multiclass
        clus
vv       16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  CLUS_1                0                 32
  CLUS_2                3                 40
  CLUS_3                2                 54

Clustering(26) Variable = 17Q GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  17Q GAIN MUTATED        2      1      1      0      0      0
  17Q GAIN WILD-TYPE     21     23     56     46      7      2
D26V1, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17Q GAIN MUTATED        0      4      0
  17Q GAIN WILD-TYPE     40     73     42
D26V2, multiclass
        clus
vv       17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  CLUS_1                0                 40
  CLUS_2                4                 73
  CLUS_3                0                 42
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17Q GAIN MUTATED        0      3      0
  17Q GAIN WILD-TYPE     54     50     24
D26V3, multiclass
        clus
vv       17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  CLUS_1                0                 54
  CLUS_2                3                 50
  CLUS_3                0                 24
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  17Q GAIN MUTATED        0      1      1      1
  17Q GAIN WILD-TYPE     20     40     17     51
D26V4, multiclass
        clus
vv       17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  CLUS_1                0                 20
  CLUS_2                1                 40
  CLUS_3                1                 17
  CLUS_4                1                 51
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17Q GAIN MUTATED        0      3      0
  17Q GAIN WILD-TYPE     34     52     42
D26V5, multiclass
        clus
vv       17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  CLUS_1                0                 34
  CLUS_2                3                 52
  CLUS_3                0                 42
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17Q GAIN MUTATED        1      2      0
  17Q GAIN WILD-TYPE     31     41     56
D26V6, multiclass
        clus
vv       17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  CLUS_1                1                 31
  CLUS_2                2                 41
  CLUS_3                0                 56

Clustering(27) Variable = 18P GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  18P GAIN MUTATED        1      0      1      6      0      0
  18P GAIN WILD-TYPE     22     24     56     40      7      2
D27V1, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18P GAIN MUTATED        4      2      2
  18P GAIN WILD-TYPE     36     75     40
D27V2, multiclass
        clus
vv       18P GAIN MUTATED 18P GAIN WILD-TYPE
  CLUS_1                4                 36
  CLUS_2                2                 75
  CLUS_3                2                 40
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18P GAIN MUTATED        4      3      1
  18P GAIN WILD-TYPE     50     50     23
D27V3, multiclass
        clus
vv       18P GAIN MUTATED 18P GAIN WILD-TYPE
  CLUS_1                4                 50
  CLUS_2                3                 50
  CLUS_3                1                 23
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  18P GAIN MUTATED        0      2      1      5
  18P GAIN WILD-TYPE     20     39     17     47
D27V4, multiclass
        clus
vv       18P GAIN MUTATED 18P GAIN WILD-TYPE
  CLUS_1                0                 20
  CLUS_2                2                 39
  CLUS_3                1                 17
  CLUS_4                5                 47
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18P GAIN MUTATED        5      2      1
  18P GAIN WILD-TYPE     29     53     41
D27V5, multiclass
        clus
vv       18P GAIN MUTATED 18P GAIN WILD-TYPE
  CLUS_1                5                 29
  CLUS_2                2                 53
  CLUS_3                1                 41
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18P GAIN MUTATED        1      2      5
  18P GAIN WILD-TYPE     31     41     51
D27V6, multiclass
        clus
vv       18P GAIN MUTATED 18P GAIN WILD-TYPE
  CLUS_1                1                 31
  CLUS_2                2                 41
  CLUS_3                5                 51

Clustering(28) Variable = 18Q GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  18Q GAIN MUTATED        3      0      1      6      0      0
  18Q GAIN WILD-TYPE     20     24     56     40      7      2
D28V1, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18Q GAIN MUTATED        4      4      2
  18Q GAIN WILD-TYPE     36     73     40
D28V2, multiclass
        clus
vv       18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  CLUS_1                4                 36
  CLUS_2                4                 73
  CLUS_3                2                 40
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18Q GAIN MUTATED        4      4      1
  18Q GAIN WILD-TYPE     50     49     23
D28V3, multiclass
        clus
vv       18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  CLUS_1                4                 50
  CLUS_2                4                 49
  CLUS_3                1                 23
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  18Q GAIN MUTATED        0      3      1      5
  18Q GAIN WILD-TYPE     20     38     17     47
D28V4, multiclass
        clus
vv       18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  CLUS_1                0                 20
  CLUS_2                3                 38
  CLUS_3                1                 17
  CLUS_4                5                 47
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18Q GAIN MUTATED        5      3      1
  18Q GAIN WILD-TYPE     29     52     41
D28V5, multiclass
        clus
vv       18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  CLUS_1                5                 29
  CLUS_2                3                 52
  CLUS_3                1                 41
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18Q GAIN MUTATED        1      3      5
  18Q GAIN WILD-TYPE     31     40     51
D28V6, multiclass
        clus
vv       18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  CLUS_1                1                 31
  CLUS_2                3                 40
  CLUS_3                5                 51

Clustering(29) Variable = 19P GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  19P GAIN MUTATED        5      1      3     10      0      1
  19P GAIN WILD-TYPE     18     23     54     36      7      1
D29V1, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19P GAIN MUTATED        7      5      8
  19P GAIN WILD-TYPE     33     72     34
D29V2, multiclass
        clus
vv       19P GAIN MUTATED 19P GAIN WILD-TYPE
  CLUS_1                7                 33
  CLUS_2                5                 72
  CLUS_3                8                 34
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19P GAIN MUTATED        7      3      4
  19P GAIN WILD-TYPE     47     50     20
D29V3, multiclass
        clus
vv       19P GAIN MUTATED 19P GAIN WILD-TYPE
  CLUS_1                7                 47
  CLUS_2                3                 50
  CLUS_3                4                 20
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  19P GAIN MUTATED        3      3      1      7
  19P GAIN WILD-TYPE     17     38     17     45
D29V4, multiclass
        clus
vv       19P GAIN MUTATED 19P GAIN WILD-TYPE
  CLUS_1                3                 17
  CLUS_2                3                 38
  CLUS_3                1                 17
  CLUS_4                7                 45
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19P GAIN MUTATED        5      3      6
  19P GAIN WILD-TYPE     29     52     36
D29V5, multiclass
        clus
vv       19P GAIN MUTATED 19P GAIN WILD-TYPE
  CLUS_1                5                 29
  CLUS_2                3                 52
  CLUS_3                6                 36
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19P GAIN MUTATED        4      3      7
  19P GAIN WILD-TYPE     28     40     49
D29V6, multiclass
        clus
vv       19P GAIN MUTATED 19P GAIN WILD-TYPE
  CLUS_1                4                 28
  CLUS_2                3                 40
  CLUS_3                7                 49

Clustering(30) Variable = 19Q GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  19Q GAIN MUTATED        2      1      2      9      0      0
  19Q GAIN WILD-TYPE     21     23     55     37      7      2
D30V1, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19Q GAIN MUTATED        4      2      8
  19Q GAIN WILD-TYPE     36     75     34
D30V2, multiclass
        clus
vv       19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  CLUS_1                4                 36
  CLUS_2                2                 75
  CLUS_3                8                 34
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19Q GAIN MUTATED        4      2      4
  19Q GAIN WILD-TYPE     50     51     20
D30V3, multiclass
        clus
vv       19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  CLUS_1                4                 50
  CLUS_2                2                 51
  CLUS_3                4                 20
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  19Q GAIN MUTATED        3      1      1      5
  19Q GAIN WILD-TYPE     17     40     17     47
D30V4, multiclass
        clus
vv       19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  CLUS_1                3                 17
  CLUS_2                1                 40
  CLUS_3                1                 17
  CLUS_4                5                 47
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19Q GAIN MUTATED        4      1      5
  19Q GAIN WILD-TYPE     30     54     37
D30V5, multiclass
        clus
vv       19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  CLUS_1                4                 30
  CLUS_2                1                 54
  CLUS_3                5                 37
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19Q GAIN MUTATED        4      1      5
  19Q GAIN WILD-TYPE     28     42     51
D30V6, multiclass
        clus
vv       19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  CLUS_1                4                 28
  CLUS_2                1                 42
  CLUS_3                5                 51

Clustering(31) Variable = 20P GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  20P GAIN MUTATED        0      1      3      7      0      0
  20P GAIN WILD-TYPE     23     23     54     39      7      2
D31V1, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20P GAIN MUTATED        5      3      3
  20P GAIN WILD-TYPE     35     74     39
D31V2, multiclass
        clus
vv       20P GAIN MUTATED 20P GAIN WILD-TYPE
  CLUS_1                5                 35
  CLUS_2                3                 74
  CLUS_3                3                 39
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20P GAIN MUTATED        5      3      1
  20P GAIN WILD-TYPE     49     50     23
D31V3, multiclass
        clus
vv       20P GAIN MUTATED 20P GAIN WILD-TYPE
  CLUS_1                5                 49
  CLUS_2                3                 50
  CLUS_3                1                 23
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  20P GAIN MUTATED        0      2      1      6
  20P GAIN WILD-TYPE     20     39     17     46
D31V4, multiclass
        clus
vv       20P GAIN MUTATED 20P GAIN WILD-TYPE
  CLUS_1                0                 20
  CLUS_2                2                 39
  CLUS_3                1                 17
  CLUS_4                6                 46
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20P GAIN MUTATED        6      2      1
  20P GAIN WILD-TYPE     28     53     41
D31V5, multiclass
        clus
vv       20P GAIN MUTATED 20P GAIN WILD-TYPE
  CLUS_1                6                 28
  CLUS_2                2                 53
  CLUS_3                1                 41
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20P GAIN MUTATED        1      2      6
  20P GAIN WILD-TYPE     31     41     50
D31V6, multiclass
        clus
vv       20P GAIN MUTATED 20P GAIN WILD-TYPE
  CLUS_1                1                 31
  CLUS_2                2                 41
  CLUS_3                6                 50

Clustering(32) Variable = 20Q GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  20Q GAIN MUTATED        1      1      1      6      0      0
  20Q GAIN WILD-TYPE     22     23     56     40      7      2
D32V1, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20Q GAIN MUTATED        4      1      4
  20Q GAIN WILD-TYPE     36     76     38
D32V2, multiclass
        clus
vv       20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  CLUS_1                4                 36
  CLUS_2                1                 76
  CLUS_3                4                 38
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20Q GAIN MUTATED        5      1      1
  20Q GAIN WILD-TYPE     49     52     23
D32V3, multiclass
        clus
vv       20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  CLUS_1                5                 49
  CLUS_2                1                 52
  CLUS_3                1                 23
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  20Q GAIN MUTATED        0      0      1      6
  20Q GAIN WILD-TYPE     20     41     17     46
D32V4, multiclass
        clus
vv       20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  CLUS_1                0                 20
  CLUS_2                0                 41
  CLUS_3                1                 17
  CLUS_4                6                 46
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20Q GAIN MUTATED        5      0      2
  20Q GAIN WILD-TYPE     29     55     40
D32V5, multiclass
        clus
vv       20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  CLUS_1                5                 29
  CLUS_2                0                 55
  CLUS_3                2                 40
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20Q GAIN MUTATED        1      0      6
  20Q GAIN WILD-TYPE     31     43     50
D32V6, multiclass
        clus
vv       20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  CLUS_1                1                 31
  CLUS_2                0                 43
  CLUS_3                6                 50

Clustering(33) Variable = 21Q GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  21Q GAIN MUTATED        1      0      0      2      0      0
  21Q GAIN WILD-TYPE     22     24     57     44      7      2
D33V1, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  21Q GAIN MUTATED        1      0      2
  21Q GAIN WILD-TYPE     39     77     40
D33V2, multiclass
        clus
vv       21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  CLUS_1                1                 39
  CLUS_2                0                 77
  CLUS_3                2                 40
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  21Q GAIN MUTATED        2      0      0
  21Q GAIN WILD-TYPE     52     53     24
D33V3, multiclass
[1] "Remove cluster labels:" "21Q GAIN MUTATED"      
clus
  21Q GAIN MUTATED 21Q GAIN WILD-TYPE 
                 2                129 
        TCGA-P7-A5NY         TCGA-P8-A5KC         TCGA-P8-A5KD 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-P8-A6RX         TCGA-P8-A6RY         TCGA-PR-A5PG 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-PR-A5PH         TCGA-QR-A6GO         TCGA-QR-A6GR 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-QR-A6GS         TCGA-QR-A6GT         TCGA-QR-A6GU 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-QR-A6GY         TCGA-QR-A6H0         TCGA-QR-A6H1 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-QR-A6H2         TCGA-QR-A6H3         TCGA-QR-A6H5 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-QR-A6H6         TCGA-QR-A700         TCGA-QR-A702 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-QR-A70C         TCGA-QR-A70D         TCGA-QR-A70E 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-QR-A70G         TCGA-QR-A70H         TCGA-QR-A70I 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-QR-A70J         TCGA-QR-A70K         TCGA-QR-A70N 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-QR-A70P         TCGA-QR-A70R         TCGA-QR-A70W 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-QR-A70X         TCGA-QR-A7IN         TCGA-QR-A7IP 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-QT-A5XJ         TCGA-QT-A5XK         TCGA-QT-A5XL 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-QT-A5XM         TCGA-QT-A5XN         TCGA-QT-A5XO 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-QT-A5XP         TCGA-QT-A69Q         TCGA-QT-A7U0 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-RM-A68T         TCGA-RM-A68W         TCGA-RT-A6Y9 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-RT-A6YA         TCGA-RT-A6YC         TCGA-RW-A67V 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-RW-A67W         TCGA-RW-A67X         TCGA-RW-A67Y 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-RW-A680         TCGA-RW-A681         TCGA-RW-A685 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-RW-A686         TCGA-RW-A688         TCGA-RW-A689 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-RW-A68A         TCGA-RW-A68B         TCGA-RW-A68C 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-RW-A68D         TCGA-RW-A68F         TCGA-RW-A68G 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-RW-A7CZ         TCGA-RW-A7D0         TCGA-RW-A8AZ 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-RX-A8JQ         TCGA-S7-A7WL         TCGA-S7-A7WM 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-S7-A7WN         TCGA-S7-A7WO         TCGA-S7-A7WP 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-S7-A7WT         TCGA-S7-A7WU         TCGA-S7-A7WV 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-S7-A7WW         TCGA-S7-A7WX         TCGA-S7-A7X0 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-SA-A6C2         TCGA-SP-A6QC         TCGA-SP-A6QD 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-SP-A6QF         TCGA-SP-A6QG         TCGA-SP-A6QK 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-SQ-A6I4         TCGA-SQ-A6I6         TCGA-SR-A6MP 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-SR-A6MT         TCGA-SR-A6MU         TCGA-SR-A6MV 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-SR-A6MX         TCGA-SR-A6N0         TCGA-TT-A6YJ 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-TT-A6YK         TCGA-TT-A6YN         TCGA-TT-A6YO 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-W2-A7HA         TCGA-W2-A7HB         TCGA-W2-A7HC 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-W2-A7HD         TCGA-W2-A7HE         TCGA-WB-A80K 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-WB-A80L         TCGA-WB-A80M         TCGA-WB-A80N 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-WB-A80O         TCGA-WB-A80Y         TCGA-WB-A814 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-WB-A815         TCGA-WB-A816         TCGA-WB-A817 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-WB-A81D         TCGA-WB-A81E         TCGA-WB-A81F 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-WB-A81G         TCGA-WB-A81H         TCGA-WB-A81M 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-WB-A81N         TCGA-WB-A81P         TCGA-WB-A81Q 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-WB-A81R         TCGA-WB-A81W         TCGA-WB-A820 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-WB-A821         TCGA-WB-A822         TCGA-XG-A823 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  21Q GAIN MUTATED        0      0      0      2
  21Q GAIN WILD-TYPE     20     41     18     50
D33V4, multiclass
[1] "Remove cluster labels:" "21Q GAIN MUTATED"      
clus
  21Q GAIN MUTATED 21Q GAIN WILD-TYPE 
                 2                129 
        TCGA-P7-A5NY         TCGA-P8-A5KC         TCGA-P8-A5KD 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-P8-A6RX         TCGA-P8-A6RY         TCGA-PR-A5PG 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-PR-A5PH         TCGA-QR-A6GO         TCGA-QR-A6GR 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-QR-A6GS         TCGA-QR-A6GT         TCGA-QR-A6GU 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-QR-A6GY         TCGA-QR-A6H0         TCGA-QR-A6H1 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-QR-A6H2         TCGA-QR-A6H3         TCGA-QR-A6H5 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-QR-A6H6         TCGA-QR-A700         TCGA-QR-A702 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-QR-A70C         TCGA-QR-A70D         TCGA-QR-A70E 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-QR-A70G         TCGA-QR-A70H         TCGA-QR-A70I 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-QR-A70J         TCGA-QR-A70K         TCGA-QR-A70N 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-QR-A70P         TCGA-QR-A70R         TCGA-QR-A70W 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-QR-A70X         TCGA-QR-A7IN         TCGA-QR-A7IP 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-QT-A5XJ         TCGA-QT-A5XK         TCGA-QT-A5XL 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-QT-A5XM         TCGA-QT-A5XN         TCGA-QT-A5XO 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-QT-A5XP         TCGA-QT-A69Q         TCGA-QT-A7U0 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-RM-A68T         TCGA-RM-A68W         TCGA-RT-A6Y9 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-RT-A6YA         TCGA-RT-A6YC         TCGA-RW-A67V 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-RW-A67W         TCGA-RW-A67X         TCGA-RW-A67Y 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-RW-A680         TCGA-RW-A681         TCGA-RW-A685 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-RW-A686         TCGA-RW-A688         TCGA-RW-A689 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-RW-A68A         TCGA-RW-A68B         TCGA-RW-A68C 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-RW-A68D         TCGA-RW-A68F         TCGA-RW-A68G 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-RW-A7CZ         TCGA-RW-A7D0         TCGA-RW-A8AZ 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-RX-A8JQ         TCGA-S7-A7WL         TCGA-S7-A7WM 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-S7-A7WN         TCGA-S7-A7WO         TCGA-S7-A7WP 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-S7-A7WT         TCGA-S7-A7WU         TCGA-S7-A7WV 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-S7-A7WW         TCGA-S7-A7WX         TCGA-S7-A7X0 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-SA-A6C2         TCGA-SP-A6QC         TCGA-SP-A6QD 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-SP-A6QF         TCGA-SP-A6QG         TCGA-SP-A6QK 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-SQ-A6I4         TCGA-SQ-A6I6         TCGA-SR-A6MP 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-SR-A6MT         TCGA-SR-A6MU         TCGA-SR-A6MV 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-SR-A6MX         TCGA-SR-A6N0         TCGA-TT-A6YJ 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-TT-A6YK         TCGA-TT-A6YN         TCGA-TT-A6YO 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-W2-A7HA         TCGA-W2-A7HB         TCGA-W2-A7HC 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-W2-A7HD         TCGA-W2-A7HE         TCGA-WB-A80K 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-WB-A80L         TCGA-WB-A80M         TCGA-WB-A80N 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-WB-A80O         TCGA-WB-A80Y         TCGA-WB-A814 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-WB-A815         TCGA-WB-A816         TCGA-WB-A817 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-WB-A81D         TCGA-WB-A81E         TCGA-WB-A81F 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-WB-A81G         TCGA-WB-A81H         TCGA-WB-A81M 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-WB-A81N         TCGA-WB-A81P         TCGA-WB-A81Q 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-WB-A81R         TCGA-WB-A81W         TCGA-WB-A820 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-WB-A821         TCGA-WB-A822         TCGA-XG-A823 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  21Q GAIN MUTATED        1      0      1
  21Q GAIN WILD-TYPE     33     55     41
D33V5, multiclass
[1] "Remove cluster labels:" "21Q GAIN MUTATED"      
clus
  21Q GAIN MUTATED 21Q GAIN WILD-TYPE 
                 2                129 
        TCGA-P7-A5NY         TCGA-P8-A5KC         TCGA-P8-A5KD 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-P8-A6RX         TCGA-P8-A6RY         TCGA-PR-A5PG 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-PR-A5PH         TCGA-QR-A6GO         TCGA-QR-A6GR 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-QR-A6GS         TCGA-QR-A6GT         TCGA-QR-A6GU 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-QR-A6GY         TCGA-QR-A6H0         TCGA-QR-A6H1 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-QR-A6H2         TCGA-QR-A6H3         TCGA-QR-A6H5 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-QR-A6H6         TCGA-QR-A700         TCGA-QR-A702 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-QR-A70C         TCGA-QR-A70D         TCGA-QR-A70E 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-QR-A70G         TCGA-QR-A70H         TCGA-QR-A70I 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-QR-A70J         TCGA-QR-A70K         TCGA-QR-A70N 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-QR-A70P         TCGA-QR-A70R         TCGA-QR-A70W 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-QR-A70X         TCGA-QR-A7IN         TCGA-QR-A7IP 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-QT-A5XJ         TCGA-QT-A5XK         TCGA-QT-A5XL 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-QT-A5XM         TCGA-QT-A5XN         TCGA-QT-A5XO 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-QT-A5XP         TCGA-QT-A69Q         TCGA-QT-A7U0 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-RM-A68T         TCGA-RM-A68W         TCGA-RT-A6Y9 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-RT-A6YA         TCGA-RT-A6YC         TCGA-RW-A67V 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-RW-A67W         TCGA-RW-A67X         TCGA-RW-A67Y 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-RW-A680         TCGA-RW-A681         TCGA-RW-A685 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-RW-A686         TCGA-RW-A688         TCGA-RW-A689 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-RW-A68A         TCGA-RW-A68B         TCGA-RW-A68C 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-RW-A68D         TCGA-RW-A68F         TCGA-RW-A68G 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-RW-A7CZ         TCGA-RW-A7D0         TCGA-RW-A8AZ 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-RX-A8JQ         TCGA-S7-A7WL         TCGA-S7-A7WM 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-S7-A7WN         TCGA-S7-A7WO         TCGA-S7-A7WP 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-S7-A7WT         TCGA-S7-A7WU         TCGA-S7-A7WV 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-S7-A7WW         TCGA-S7-A7WX         TCGA-S7-A7X0 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-SA-A6C2         TCGA-SP-A6QC         TCGA-SP-A6QD 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-SP-A6QF         TCGA-SP-A6QG         TCGA-SP-A6QK 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-SQ-A6I4         TCGA-SQ-A6I6         TCGA-SR-A6MP 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-SR-A6MT         TCGA-SR-A6MU         TCGA-SR-A6MV 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-SR-A6MX         TCGA-SR-A6N0         TCGA-TT-A6YJ 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-TT-A6YK         TCGA-TT-A6YN         TCGA-TT-A6YO 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-W2-A7HA         TCGA-W2-A7HB         TCGA-W2-A7HC 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-W2-A7HD         TCGA-W2-A7HE         TCGA-WB-A80K 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-WB-A80L         TCGA-WB-A80M         TCGA-WB-A80N 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-WB-A80O         TCGA-WB-A80Y         TCGA-WB-A814 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-WB-A815         TCGA-WB-A816         TCGA-WB-A817 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-WB-A81D         TCGA-WB-A81E         TCGA-WB-A81F 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-WB-A81G         TCGA-WB-A81H         TCGA-WB-A81M 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-WB-A81N         TCGA-WB-A81P         TCGA-WB-A81Q 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-WB-A81R         TCGA-WB-A81W         TCGA-WB-A820 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-WB-A821         TCGA-WB-A822         TCGA-XG-A823 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  21Q GAIN MUTATED        0      0      2
  21Q GAIN WILD-TYPE     32     43     54
D33V6, multiclass
[1] "Remove cluster labels:" "21Q GAIN MUTATED"      
clus
  21Q GAIN MUTATED 21Q GAIN WILD-TYPE 
                 2                129 
        TCGA-P7-A5NY         TCGA-P8-A5KC         TCGA-P8-A5KD 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-P8-A6RX         TCGA-P8-A6RY         TCGA-PR-A5PG 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-PR-A5PH         TCGA-QR-A6GO         TCGA-QR-A6GR 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-QR-A6GS         TCGA-QR-A6GT         TCGA-QR-A6GU 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-QR-A6GY         TCGA-QR-A6H0         TCGA-QR-A6H1 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-QR-A6H2         TCGA-QR-A6H3         TCGA-QR-A6H5 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-QR-A6H6         TCGA-QR-A700         TCGA-QR-A702 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-QR-A70C         TCGA-QR-A70D         TCGA-QR-A70E 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-QR-A70G         TCGA-QR-A70H         TCGA-QR-A70I 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-QR-A70J         TCGA-QR-A70K         TCGA-QR-A70N 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-QR-A70P         TCGA-QR-A70R         TCGA-QR-A70W 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-QR-A70X         TCGA-QR-A7IN         TCGA-QR-A7IP 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-QT-A5XJ         TCGA-QT-A5XK         TCGA-QT-A5XL 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-QT-A5XM         TCGA-QT-A5XN         TCGA-QT-A5XO 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-QT-A5XP         TCGA-QT-A69Q         TCGA-QT-A7U0 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-RM-A68T         TCGA-RM-A68W         TCGA-RT-A6Y9 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-RT-A6YA         TCGA-RT-A6YC         TCGA-RW-A67V 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-RW-A67W         TCGA-RW-A67X         TCGA-RW-A67Y 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-RW-A680         TCGA-RW-A681         TCGA-RW-A685 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-RW-A686         TCGA-RW-A688         TCGA-RW-A689 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-RW-A68A         TCGA-RW-A68B         TCGA-RW-A68C 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-RW-A68D         TCGA-RW-A68F         TCGA-RW-A68G 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-RW-A7CZ         TCGA-RW-A7D0         TCGA-RW-A8AZ 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-RX-A8JQ         TCGA-S7-A7WL         TCGA-S7-A7WM 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-S7-A7WN         TCGA-S7-A7WO         TCGA-S7-A7WP 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-S7-A7WT         TCGA-S7-A7WU         TCGA-S7-A7WV 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-S7-A7WW         TCGA-S7-A7WX         TCGA-S7-A7X0 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-SA-A6C2         TCGA-SP-A6QC         TCGA-SP-A6QD 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-SP-A6QF         TCGA-SP-A6QG         TCGA-SP-A6QK 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-SQ-A6I4         TCGA-SQ-A6I6         TCGA-SR-A6MP 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-SR-A6MT         TCGA-SR-A6MU         TCGA-SR-A6MV 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-SR-A6MX         TCGA-SR-A6N0         TCGA-TT-A6YJ 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-TT-A6YK         TCGA-TT-A6YN         TCGA-TT-A6YO 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-W2-A7HA         TCGA-W2-A7HB         TCGA-W2-A7HC 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-W2-A7HD         TCGA-W2-A7HE         TCGA-WB-A80K 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-WB-A80L         TCGA-WB-A80M         TCGA-WB-A80N 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-WB-A80O         TCGA-WB-A80Y         TCGA-WB-A814 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-WB-A815         TCGA-WB-A816         TCGA-WB-A817 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-WB-A81D         TCGA-WB-A81E         TCGA-WB-A81F 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-WB-A81G         TCGA-WB-A81H         TCGA-WB-A81M 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-WB-A81N         TCGA-WB-A81P         TCGA-WB-A81Q 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-WB-A81R         TCGA-WB-A81W         TCGA-WB-A820 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-WB-A821         TCGA-WB-A822         TCGA-XG-A823 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 

Clustering(34) Variable = 22Q GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  22Q GAIN MUTATED        0      0      0      3      0      0
  22Q GAIN WILD-TYPE     23     24     57     43      7      2
D34V1, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  22Q GAIN MUTATED        2      0      1
  22Q GAIN WILD-TYPE     38     77     41
D34V2, multiclass
        clus
vv       22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  CLUS_1                2                 38
  CLUS_2                0                 77
  CLUS_3                1                 41
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  22Q GAIN MUTATED        3      0      0
  22Q GAIN WILD-TYPE     51     53     24
D34V3, multiclass
        clus
vv       22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  CLUS_1                3                 51
  CLUS_2                0                 53
  CLUS_3                0                 24
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  22Q GAIN MUTATED        0      0      0      3
  22Q GAIN WILD-TYPE     20     41     18     49
D34V4, multiclass
        clus
vv       22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  CLUS_1                0                 20
  CLUS_2                0                 41
  CLUS_3                0                 18
  CLUS_4                3                 49
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  22Q GAIN MUTATED        3      0      0
  22Q GAIN WILD-TYPE     31     55     42
D34V5, multiclass
        clus
vv       22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  CLUS_1                3                 31
  CLUS_2                0                 55
  CLUS_3                0                 42
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  22Q GAIN MUTATED        0      0      3
  22Q GAIN WILD-TYPE     32     43     53
D34V6, multiclass
        clus
vv       22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  CLUS_1                0                 32
  CLUS_2                0                 43
  CLUS_3                3                 53

Clustering(35) Variable = XQ GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  XQ GAIN MUTATED        1      1      0      3      0      0
  XQ GAIN WILD-TYPE     22     23     57     43      7      2
D35V1, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  XQ GAIN MUTATED        2      0      3
  XQ GAIN WILD-TYPE     38     77     39
D35V2, multiclass
        clus
vv       XQ GAIN MUTATED XQ GAIN WILD-TYPE
  CLUS_1               2                38
  CLUS_2               0                77
  CLUS_3               3                39
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  XQ GAIN MUTATED        2      1      1
  XQ GAIN WILD-TYPE     52     52     23
D35V3, multiclass
        clus
vv       XQ GAIN MUTATED XQ GAIN WILD-TYPE
  CLUS_1               2                52
  CLUS_2               1                52
  CLUS_3               1                23
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  XQ GAIN MUTATED        0      0      1      3
  XQ GAIN WILD-TYPE     20     41     17     49
D35V4, multiclass
        clus
vv       XQ GAIN MUTATED XQ GAIN WILD-TYPE
  CLUS_1               0                20
  CLUS_2               0                41
  CLUS_3               1                17
  CLUS_4               3                49
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  XQ GAIN MUTATED        2      0      2
  XQ GAIN WILD-TYPE     32     55     40
D35V5, multiclass
        clus
vv       XQ GAIN MUTATED XQ GAIN WILD-TYPE
  CLUS_1               2                32
  CLUS_2               0                55
  CLUS_3               2                40
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  XQ GAIN MUTATED        1      0      3
  XQ GAIN WILD-TYPE     31     43     53
D35V6, multiclass
        clus
vv       XQ GAIN MUTATED XQ GAIN WILD-TYPE
  CLUS_1               1                31
  CLUS_2               0                43
  CLUS_3               3                53

Clustering(36) Variable = 1P LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  1P LOSS MUTATED       17      4     49     18      7      1
  1P LOSS WILD-TYPE      6     20      8     28      0      1
D36V1, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1P LOSS MUTATED       20     54     22
  1P LOSS WILD-TYPE     20     23     20
D36V2, multiclass
        clus
vv       1P LOSS MUTATED 1P LOSS WILD-TYPE
  CLUS_1              20                20
  CLUS_2              54                23
  CLUS_3              22                20
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1P LOSS MUTATED       25     39     12
  1P LOSS WILD-TYPE     29     14     12
D36V3, multiclass
        clus
vv       1P LOSS MUTATED 1P LOSS WILD-TYPE
  CLUS_1              25                29
  CLUS_2              39                14
  CLUS_3              12                12
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  1P LOSS MUTATED       11     32      9     24
  1P LOSS WILD-TYPE      9      9      9     28
D36V4, multiclass
        clus
vv       1P LOSS MUTATED 1P LOSS WILD-TYPE
  CLUS_1              11                 9
  CLUS_2              32                 9
  CLUS_3               9                 9
  CLUS_4              24                28
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1P LOSS MUTATED       11     40     25
  1P LOSS WILD-TYPE     23     15     17
D36V5, multiclass
        clus
vv       1P LOSS MUTATED 1P LOSS WILD-TYPE
  CLUS_1              11                23
  CLUS_2              40                15
  CLUS_3              25                17
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1P LOSS MUTATED       17     32     27
  1P LOSS WILD-TYPE     15     11     29
D36V6, multiclass
        clus
vv       1P LOSS MUTATED 1P LOSS WILD-TYPE
  CLUS_1              17                15
  CLUS_2              32                11
  CLUS_3              27                29

Clustering(37) Variable = 1Q LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  1Q LOSS MUTATED        5      1      8     12      2      0
  1Q LOSS WILD-TYPE     18     23     49     34      5      2
D37V1, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1Q LOSS MUTATED       12     10      6
  1Q LOSS WILD-TYPE     28     67     36
D37V2, multiclass
        clus
vv       1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  CLUS_1              12                28
  CLUS_2              10                67
  CLUS_3               6                36
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1Q LOSS MUTATED       11      9      4
  1Q LOSS WILD-TYPE     43     44     20
D37V3, multiclass
        clus
vv       1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  CLUS_1              11                43
  CLUS_2               9                44
  CLUS_3               4                20
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  1Q LOSS MUTATED        4      5      2     13
  1Q LOSS WILD-TYPE     16     36     16     39
D37V4, multiclass
        clus
vv       1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  CLUS_1               4                16
  CLUS_2               5                36
  CLUS_3               2                16
  CLUS_4              13                39
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1Q LOSS MUTATED        9      8      7
  1Q LOSS WILD-TYPE     25     47     35
D37V5, multiclass
        clus
vv       1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  CLUS_1               9                25
  CLUS_2               8                47
  CLUS_3               7                35
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1Q LOSS MUTATED        4      5     15
  1Q LOSS WILD-TYPE     28     38     41
D37V6, multiclass
        clus
vv       1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  CLUS_1               4                28
  CLUS_2               5                38
  CLUS_3              15                41

Clustering(38) Variable = 2P LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  2P LOSS MUTATED        2      2      1      5      0      0
  2P LOSS WILD-TYPE     21     22     56     41      7      2
D38V1, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2P LOSS MUTATED        0      8      2
  2P LOSS WILD-TYPE     40     69     40
D38V2, multiclass
        clus
vv       2P LOSS MUTATED 2P LOSS WILD-TYPE
  CLUS_1               0                40
  CLUS_2               8                69
  CLUS_3               2                40
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2P LOSS MUTATED        6      2      2
  2P LOSS WILD-TYPE     48     51     22
D38V3, multiclass
        clus
vv       2P LOSS MUTATED 2P LOSS WILD-TYPE
  CLUS_1               6                48
  CLUS_2               2                51
  CLUS_3               2                22
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  2P LOSS MUTATED        2      0      5      3
  2P LOSS WILD-TYPE     18     41     13     49
D38V4, multiclass
        clus
vv       2P LOSS MUTATED 2P LOSS WILD-TYPE
  CLUS_1               2                18
  CLUS_2               0                41
  CLUS_3               5                13
  CLUS_4               3                49
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2P LOSS MUTATED        2      3      5
  2P LOSS WILD-TYPE     32     52     37
D38V5, multiclass
        clus
vv       2P LOSS MUTATED 2P LOSS WILD-TYPE
  CLUS_1               2                32
  CLUS_2               3                52
  CLUS_3               5                37
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2P LOSS MUTATED        7      0      3
  2P LOSS WILD-TYPE     25     43     53
D38V6, multiclass
        clus
vv       2P LOSS MUTATED 2P LOSS WILD-TYPE
  CLUS_1               7                25
  CLUS_2               0                43
  CLUS_3               3                53

Clustering(39) Variable = 2Q LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  2Q LOSS MUTATED        3      0      4      5      1      0
  2Q LOSS WILD-TYPE     20     24     53     41      6      2
D39V1, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2Q LOSS MUTATED        5      6      2
  2Q LOSS WILD-TYPE     35     71     40
D39V2, multiclass
        clus
vv       2Q LOSS MUTATED 2Q LOSS WILD-TYPE
  CLUS_1               5                35
  CLUS_2               6                71
  CLUS_3               2                40
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2Q LOSS MUTATED        7      4      2
  2Q LOSS WILD-TYPE     47     49     22
D39V3, multiclass
        clus
vv       2Q LOSS MUTATED 2Q LOSS WILD-TYPE
  CLUS_1               7                47
  CLUS_2               4                49
  CLUS_3               2                22
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  2Q LOSS MUTATED        2      1      1      9
  2Q LOSS WILD-TYPE     18     40     17     43
D39V4, multiclass
        clus
vv       2Q LOSS MUTATED 2Q LOSS WILD-TYPE
  CLUS_1               2                18
  CLUS_2               1                40
  CLUS_3               1                17
  CLUS_4               9                43
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2Q LOSS MUTATED        4      5      4
  2Q LOSS WILD-TYPE     30     50     38
D39V5, multiclass
        clus
vv       2Q LOSS MUTATED 2Q LOSS WILD-TYPE
  CLUS_1               4                30
  CLUS_2               5                50
  CLUS_3               4                38
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2Q LOSS MUTATED        3      2      8
  2Q LOSS WILD-TYPE     29     41     48
D39V6, multiclass
        clus
vv       2Q LOSS MUTATED 2Q LOSS WILD-TYPE
  CLUS_1               3                29
  CLUS_2               2                41
  CLUS_3               8                48

Clustering(40) Variable = 3P LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  3P LOSS MUTATED       12      1     12     33      3      0
  3P LOSS WILD-TYPE     11     23     45     13      4      2
D40V1, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3P LOSS MUTATED       22     23     16
  3P LOSS WILD-TYPE     18     54     26
D40V2, multiclass
        clus
vv       3P LOSS MUTATED 3P LOSS WILD-TYPE
  CLUS_1              22                18
  CLUS_2              23                54
  CLUS_3              16                26
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3P LOSS MUTATED       32     13      4
  3P LOSS WILD-TYPE     22     40     20
D40V3, multiclass
        clus
vv       3P LOSS MUTATED 3P LOSS WILD-TYPE
  CLUS_1              32                22
  CLUS_2              13                40
  CLUS_3               4                20
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  3P LOSS MUTATED        2     12      5     30
  3P LOSS WILD-TYPE     18     29     13     22
D40V4, multiclass
        clus
vv       3P LOSS MUTATED 3P LOSS WILD-TYPE
  CLUS_1               2                18
  CLUS_2              12                29
  CLUS_3               5                13
  CLUS_4              30                22
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3P LOSS MUTATED       22     15     12
  3P LOSS WILD-TYPE     12     40     30
D40V5, multiclass
        clus
vv       3P LOSS MUTATED 3P LOSS WILD-TYPE
  CLUS_1              22                12
  CLUS_2              15                40
  CLUS_3              12                30
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3P LOSS MUTATED        7     13     29
  3P LOSS WILD-TYPE     25     30     27
D40V6, multiclass
        clus
vv       3P LOSS MUTATED 3P LOSS WILD-TYPE
  CLUS_1               7                25
  CLUS_2              13                30
  CLUS_3              29                27

Clustering(41) Variable = 3Q LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  3Q LOSS MUTATED       12      0     39     32      5      1
  3Q LOSS WILD-TYPE     11     24     18     14      2      1
D41V1, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3Q LOSS MUTATED       25     43     21
  3Q LOSS WILD-TYPE     15     34     21
D41V2, multiclass
        clus
vv       3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  CLUS_1              25                15
  CLUS_2              43                34
  CLUS_3              21                21
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3Q LOSS MUTATED       34     29      8
  3Q LOSS WILD-TYPE     20     24     16
D41V3, multiclass
        clus
vv       3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  CLUS_1              34                20
  CLUS_2              29                24
  CLUS_3               8                16
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  3Q LOSS MUTATED        6     27      4     34
  3Q LOSS WILD-TYPE     14     14     14     18
D41V4, multiclass
        clus
vv       3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  CLUS_1               6                14
  CLUS_2              27                14
  CLUS_3               4                14
  CLUS_4              34                18
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3Q LOSS MUTATED       22     30     19
  3Q LOSS WILD-TYPE     12     25     23
D41V5, multiclass
        clus
vv       3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  CLUS_1              22                12
  CLUS_2              30                25
  CLUS_3              19                23
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3Q LOSS MUTATED       10     27     34
  3Q LOSS WILD-TYPE     22     16     22
D41V6, multiclass
        clus
vv       3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  CLUS_1              10                22
  CLUS_2              27                16
  CLUS_3              34                22

Clustering(42) Variable = 4P LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  4P LOSS MUTATED        1      1      0      8      0      0
  4P LOSS WILD-TYPE     22     23     57     38      7      2
D42V1, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4P LOSS MUTATED        1      4      5
  4P LOSS WILD-TYPE     39     73     37
D42V2, multiclass
        clus
vv       4P LOSS MUTATED 4P LOSS WILD-TYPE
  CLUS_1               1                39
  CLUS_2               4                73
  CLUS_3               5                37
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4P LOSS MUTATED        5      3      0
  4P LOSS WILD-TYPE     49     50     24
D42V3, multiclass
        clus
vv       4P LOSS MUTATED 4P LOSS WILD-TYPE
  CLUS_1               5                49
  CLUS_2               3                50
  CLUS_3               0                24
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  4P LOSS MUTATED        0      2      1      5
  4P LOSS WILD-TYPE     20     39     17     47
D42V4, multiclass
        clus
vv       4P LOSS MUTATED 4P LOSS WILD-TYPE
  CLUS_1               0                20
  CLUS_2               2                39
  CLUS_3               1                17
  CLUS_4               5                47
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4P LOSS MUTATED        5      3      0
  4P LOSS WILD-TYPE     29     52     42
D42V5, multiclass
        clus
vv       4P LOSS MUTATED 4P LOSS WILD-TYPE
  CLUS_1               5                29
  CLUS_2               3                52
  CLUS_3               0                42
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4P LOSS MUTATED        1      2      5
  4P LOSS WILD-TYPE     31     41     51
D42V6, multiclass
        clus
vv       4P LOSS MUTATED 4P LOSS WILD-TYPE
  CLUS_1               1                31
  CLUS_2               2                41
  CLUS_3               5                51

Clustering(43) Variable = 4Q LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  4Q LOSS MUTATED        1      1      1      7      0      0
  4Q LOSS WILD-TYPE     22     23     56     39      7      2
D43V1, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4Q LOSS MUTATED        1      4      5
  4Q LOSS WILD-TYPE     39     73     37
D43V2, multiclass
        clus
vv       4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  CLUS_1               1                39
  CLUS_2               4                73
  CLUS_3               5                37
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4Q LOSS MUTATED        5      3      0
  4Q LOSS WILD-TYPE     49     50     24
D43V3, multiclass
        clus
vv       4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  CLUS_1               5                49
  CLUS_2               3                50
  CLUS_3               0                24
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  4Q LOSS MUTATED        0      2      1      5
  4Q LOSS WILD-TYPE     20     39     17     47
D43V4, multiclass
        clus
vv       4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  CLUS_1               0                20
  CLUS_2               2                39
  CLUS_3               1                17
  CLUS_4               5                47
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4Q LOSS MUTATED        5      3      0
  4Q LOSS WILD-TYPE     29     52     42
D43V5, multiclass
        clus
vv       4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  CLUS_1               5                29
  CLUS_2               3                52
  CLUS_3               0                42
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4Q LOSS MUTATED        1      2      5
  4Q LOSS WILD-TYPE     31     41     51
D43V6, multiclass
        clus
vv       4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  CLUS_1               1                31
  CLUS_2               2                41
  CLUS_3               5                51

Clustering(44) Variable = 5P LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  5P LOSS MUTATED        0      0      0      5      0      0
  5P LOSS WILD-TYPE     23     24     57     41      7      2
D44V1, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5P LOSS MUTATED        2      1      2
  5P LOSS WILD-TYPE     38     76     40
D44V2, multiclass
        clus
vv       5P LOSS MUTATED 5P LOSS WILD-TYPE
  CLUS_1               2                38
  CLUS_2               1                76
  CLUS_3               2                40
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5P LOSS MUTATED        2      1      0
  5P LOSS WILD-TYPE     52     52     24
D44V3, multiclass
        clus
vv       5P LOSS MUTATED 5P LOSS WILD-TYPE
  CLUS_1               2                52
  CLUS_2               1                52
  CLUS_3               0                24
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  5P LOSS MUTATED        0      0      1      2
  5P LOSS WILD-TYPE     20     41     17     50
D44V4, multiclass
        clus
vv       5P LOSS MUTATED 5P LOSS WILD-TYPE
  CLUS_1               0                20
  CLUS_2               0                41
  CLUS_3               1                17
  CLUS_4               2                50
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5P LOSS MUTATED        2      1      0
  5P LOSS WILD-TYPE     32     54     42
D44V5, multiclass
        clus
vv       5P LOSS MUTATED 5P LOSS WILD-TYPE
  CLUS_1               2                32
  CLUS_2               1                54
  CLUS_3               0                42
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5P LOSS MUTATED        1      0      2
  5P LOSS WILD-TYPE     31     43     54
D44V6, multiclass
        clus
vv       5P LOSS MUTATED 5P LOSS WILD-TYPE
  CLUS_1               1                31
  CLUS_2               0                43
  CLUS_3               2                54

Clustering(45) Variable = 5Q LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  5Q LOSS MUTATED        1      0      0      5      1      0
  5Q LOSS WILD-TYPE     22     24     57     41      6      2
D45V1, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5Q LOSS MUTATED        2      4      1
  5Q LOSS WILD-TYPE     38     73     41
D45V2, multiclass
        clus
vv       5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  CLUS_1               2                38
  CLUS_2               4                73
  CLUS_3               1                41
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5Q LOSS MUTATED        3      4      0
  5Q LOSS WILD-TYPE     51     49     24
D45V3, multiclass
        clus
vv       5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  CLUS_1               3                51
  CLUS_2               4                49
  CLUS_3               0                24
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  5Q LOSS MUTATED        0      2      2      3
  5Q LOSS WILD-TYPE     20     39     16     49
D45V4, multiclass
        clus
vv       5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  CLUS_1               0                20
  CLUS_2               2                39
  CLUS_3               2                16
  CLUS_4               3                49
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5Q LOSS MUTATED        2      5      0
  5Q LOSS WILD-TYPE     32     50     42
D45V5, multiclass
        clus
vv       5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  CLUS_1               2                32
  CLUS_2               5                50
  CLUS_3               0                42
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5Q LOSS MUTATED        2      2      3
  5Q LOSS WILD-TYPE     30     41     53
D45V6, multiclass
        clus
vv       5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  CLUS_1               2                30
  CLUS_2               2                41
  CLUS_3               3                53

Clustering(46) Variable = 6Q LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  6Q LOSS MUTATED        0      0     15      3      0      1
  6Q LOSS WILD-TYPE     23     24     42     43      7      1
D46V1, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6Q LOSS MUTATED        1     17      1
  6Q LOSS WILD-TYPE     39     60     41
D46V2, multiclass
        clus
vv       6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  CLUS_1               1                39
  CLUS_2              17                60
  CLUS_3               1                41
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6Q LOSS MUTATED        0     11      2
  6Q LOSS WILD-TYPE     54     42     22
D46V3, multiclass
        clus
vv       6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  CLUS_1               0                54
  CLUS_2              11                42
  CLUS_3               2                22
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  6Q LOSS MUTATED        1     12      0      0
  6Q LOSS WILD-TYPE     19     29     18     52
D46V4, multiclass
        clus
vv       6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  CLUS_1               1                19
  CLUS_2              12                29
  CLUS_3               0                18
  CLUS_4               0                52
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6Q LOSS MUTATED        0     12      1
  6Q LOSS WILD-TYPE     34     43     41
D46V5, multiclass
        clus
vv       6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  CLUS_1               0                34
  CLUS_2              12                43
  CLUS_3               1                41
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6Q LOSS MUTATED        1     12      0
  6Q LOSS WILD-TYPE     31     31     56
D46V6, multiclass
        clus
vv       6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  CLUS_1               1                31
  CLUS_2              12                31
  CLUS_3               0                56

Clustering(47) Variable = 7Q LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  7Q LOSS MUTATED        0      1      5      0      0      0
  7Q LOSS WILD-TYPE     23     23     52     46      7      2
D47V1, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7Q LOSS MUTATED        0      4      2
  7Q LOSS WILD-TYPE     40     73     40
D47V2, multiclass
        clus
vv       7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  CLUS_1               0                40
  CLUS_2               4                73
  CLUS_3               2                40
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7Q LOSS MUTATED        0      4      1
  7Q LOSS WILD-TYPE     54     49     23
D47V3, multiclass
        clus
vv       7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  CLUS_1               0                54
  CLUS_2               4                49
  CLUS_3               1                23
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  7Q LOSS MUTATED        0      4      1      0
  7Q LOSS WILD-TYPE     20     37     17     52
D47V4, multiclass
        clus
vv       7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  CLUS_1               0                20
  CLUS_2               4                37
  CLUS_3               1                17
  CLUS_4               0                52
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7Q LOSS MUTATED        0      5      0
  7Q LOSS WILD-TYPE     34     50     42
D47V5, multiclass
        clus
vv       7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  CLUS_1               0                34
  CLUS_2               5                50
  CLUS_3               0                42
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7Q LOSS MUTATED        1      4      0
  7Q LOSS WILD-TYPE     31     39     56
D47V6, multiclass
        clus
vv       7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  CLUS_1               1                31
  CLUS_2               4                39
  CLUS_3               0                56

Clustering(48) Variable = 8P LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  8P LOSS MUTATED        6      1      7      5      0      0
  8P LOSS WILD-TYPE     17     23     50     41      7      2
D48V1, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8P LOSS MUTATED        5     11      3
  8P LOSS WILD-TYPE     35     66     39
D48V2, multiclass
        clus
vv       8P LOSS MUTATED 8P LOSS WILD-TYPE
  CLUS_1               5                35
  CLUS_2              11                66
  CLUS_3               3                39
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8P LOSS MUTATED        5      7      3
  8P LOSS WILD-TYPE     49     46     21
D48V3, multiclass
        clus
vv       8P LOSS MUTATED 8P LOSS WILD-TYPE
  CLUS_1               5                49
  CLUS_2               7                46
  CLUS_3               3                21
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  8P LOSS MUTATED        1      6      1      7
  8P LOSS WILD-TYPE     19     35     17     45
D48V4, multiclass
        clus
vv       8P LOSS MUTATED 8P LOSS WILD-TYPE
  CLUS_1               1                19
  CLUS_2               6                35
  CLUS_3               1                17
  CLUS_4               7                45
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8P LOSS MUTATED        3      9      3
  8P LOSS WILD-TYPE     31     46     39
D48V5, multiclass
        clus
vv       8P LOSS MUTATED 8P LOSS WILD-TYPE
  CLUS_1               3                31
  CLUS_2               9                46
  CLUS_3               3                39
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8P LOSS MUTATED        2      7      6
  8P LOSS WILD-TYPE     30     36     50
D48V6, multiclass
        clus
vv       8P LOSS MUTATED 8P LOSS WILD-TYPE
  CLUS_1               2                30
  CLUS_2               7                36
  CLUS_3               6                50

Clustering(49) Variable = 8Q LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  8Q LOSS MUTATED        3      0      5      4      0      0
  8Q LOSS WILD-TYPE     20     24     52     42      7      2
D49V1, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8Q LOSS MUTATED        4      5      3
  8Q LOSS WILD-TYPE     36     72     39
D49V2, multiclass
        clus
vv       8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  CLUS_1               4                36
  CLUS_2               5                72
  CLUS_3               3                39
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8Q LOSS MUTATED        5      3      0
  8Q LOSS WILD-TYPE     49     50     24
D49V3, multiclass
        clus
vv       8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  CLUS_1               5                49
  CLUS_2               3                50
  CLUS_3               0                24
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  8Q LOSS MUTATED        0      2      0      6
  8Q LOSS WILD-TYPE     20     39     18     46
D49V4, multiclass
        clus
vv       8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  CLUS_1               0                20
  CLUS_2               2                39
  CLUS_3               0                18
  CLUS_4               6                46
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8Q LOSS MUTATED        2      4      2
  8Q LOSS WILD-TYPE     32     51     40
D49V5, multiclass
        clus
vv       8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  CLUS_1               2                32
  CLUS_2               4                51
  CLUS_3               2                40
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8Q LOSS MUTATED        0      3      5
  8Q LOSS WILD-TYPE     32     40     51
D49V6, multiclass
        clus
vv       8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  CLUS_1               0                32
  CLUS_2               3                40
  CLUS_3               5                51

Clustering(50) Variable = 9P LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  9P LOSS MUTATED        5      0      5      1      1      0
  9P LOSS WILD-TYPE     18     24     52     45      6      2
D50V1, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9P LOSS MUTATED        3      7      2
  9P LOSS WILD-TYPE     37     70     40
D50V2, multiclass
        clus
vv       9P LOSS MUTATED 9P LOSS WILD-TYPE
  CLUS_1               3                37
  CLUS_2               7                70
  CLUS_3               2                40
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9P LOSS MUTATED        4      4      1
  9P LOSS WILD-TYPE     50     49     23
D50V3, multiclass
        clus
vv       9P LOSS MUTATED 9P LOSS WILD-TYPE
  CLUS_1               4                50
  CLUS_2               4                49
  CLUS_3               1                23
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  9P LOSS MUTATED        0      5      2      2
  9P LOSS WILD-TYPE     20     36     16     50
D50V4, multiclass
        clus
vv       9P LOSS MUTATED 9P LOSS WILD-TYPE
  CLUS_1               0                20
  CLUS_2               5                36
  CLUS_3               2                16
  CLUS_4               2                50
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9P LOSS MUTATED        2      6      1
  9P LOSS WILD-TYPE     32     49     41
D50V5, multiclass
        clus
vv       9P LOSS MUTATED 9P LOSS WILD-TYPE
  CLUS_1               2                32
  CLUS_2               6                49
  CLUS_3               1                41
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9P LOSS MUTATED        2      5      2
  9P LOSS WILD-TYPE     30     38     54
D50V6, multiclass
        clus
vv       9P LOSS MUTATED 9P LOSS WILD-TYPE
  CLUS_1               2                30
  CLUS_2               5                38
  CLUS_3               2                54

Clustering(51) Variable = 9Q LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  9Q LOSS MUTATED        5      0      2      3      1      0
  9Q LOSS WILD-TYPE     18     24     55     43      6      2
D51V1, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9Q LOSS MUTATED        4      5      2
  9Q LOSS WILD-TYPE     36     72     40
D51V2, multiclass
        clus
vv       9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  CLUS_1               4                36
  CLUS_2               5                72
  CLUS_3               2                40
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9Q LOSS MUTATED        5      4      0
  9Q LOSS WILD-TYPE     49     49     24
D51V3, multiclass
        clus
vv       9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  CLUS_1               5                49
  CLUS_2               4                49
  CLUS_3               0                24
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  9Q LOSS MUTATED        0      4      2      3
  9Q LOSS WILD-TYPE     20     37     16     49
D51V4, multiclass
        clus
vv       9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  CLUS_1               0                20
  CLUS_2               4                37
  CLUS_3               2                16
  CLUS_4               3                49
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9Q LOSS MUTATED        3      5      1
  9Q LOSS WILD-TYPE     31     50     41
D51V5, multiclass
        clus
vv       9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  CLUS_1               3                31
  CLUS_2               5                50
  CLUS_3               1                41
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9Q LOSS MUTATED        2      4      3
  9Q LOSS WILD-TYPE     30     39     53
D51V6, multiclass
        clus
vv       9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  CLUS_1               2                30
  CLUS_2               4                39
  CLUS_3               3                53

Clustering(52) Variable = 11P LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  11P LOSS MUTATED        8      5      1     30      6      2
  11P LOSS WILD-TYPE     15     19     56     16      1      0
D52V1, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11P LOSS MUTATED       21     15     16
  11P LOSS WILD-TYPE     19     62     26
D52V2, multiclass
        clus
vv       11P LOSS MUTATED 11P LOSS WILD-TYPE
  CLUS_1               21                 19
  CLUS_2               15                 62
  CLUS_3               16                 26
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11P LOSS MUTATED       27     10      6
  11P LOSS WILD-TYPE     27     43     18
D52V3, multiclass
        clus
vv       11P LOSS MUTATED 11P LOSS WILD-TYPE
  CLUS_1               27                 27
  CLUS_2               10                 43
  CLUS_3                6                 18
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  11P LOSS MUTATED        6      3      5     29
  11P LOSS WILD-TYPE     14     38     13     23
D52V4, multiclass
        clus
vv       11P LOSS MUTATED 11P LOSS WILD-TYPE
  CLUS_1                6                 14
  CLUS_2                3                 38
  CLUS_3                5                 13
  CLUS_4               29                 23
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11P LOSS MUTATED       20      9     14
  11P LOSS WILD-TYPE     14     46     28
D52V5, multiclass
        clus
vv       11P LOSS MUTATED 11P LOSS WILD-TYPE
  CLUS_1               20                 14
  CLUS_2                9                 46
  CLUS_3               14                 28
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11P LOSS MUTATED        9      5     29
  11P LOSS WILD-TYPE     23     38     27
D52V6, multiclass
        clus
vv       11P LOSS MUTATED 11P LOSS WILD-TYPE
  CLUS_1                9                 23
  CLUS_2                5                 38
  CLUS_3               29                 27

Clustering(53) Variable = 11Q LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  11Q LOSS MUTATED        5      2      1     29      1      1
  11Q LOSS WILD-TYPE     18     22     56     17      6      1
D53V1, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11Q LOSS MUTATED       15     13     11
  11Q LOSS WILD-TYPE     25     64     31
D53V2, multiclass
        clus
vv       11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  CLUS_1               15                 25
  CLUS_2               13                 64
  CLUS_3               11                 31
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11Q LOSS MUTATED       20      8      5
  11Q LOSS WILD-TYPE     34     45     19
D53V3, multiclass
        clus
vv       11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  CLUS_1               20                 34
  CLUS_2                8                 45
  CLUS_3                5                 19
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  11Q LOSS MUTATED        5      4      3     21
  11Q LOSS WILD-TYPE     15     37     15     31
D53V4, multiclass
        clus
vv       11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  CLUS_1                5                 15
  CLUS_2                4                 37
  CLUS_3                3                 15
  CLUS_4               21                 31
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11Q LOSS MUTATED       18      8      7
  11Q LOSS WILD-TYPE     16     47     35
D53V5, multiclass
        clus
vv       11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  CLUS_1               18                 16
  CLUS_2                8                 47
  CLUS_3                7                 35
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11Q LOSS MUTATED        6      4     23
  11Q LOSS WILD-TYPE     26     39     33
D53V6, multiclass
        clus
vv       11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  CLUS_1                6                 26
  CLUS_2                4                 39
  CLUS_3               23                 33

Clustering(54) Variable = 13Q LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  13Q LOSS MUTATED        2      0      3      2      0      0
  13Q LOSS WILD-TYPE     21     24     54     44      7      2
D54V1, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  13Q LOSS MUTATED        1      5      1
  13Q LOSS WILD-TYPE     39     72     41
D54V2, multiclass
        clus
vv       13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  CLUS_1                1                 39
  CLUS_2                5                 72
  CLUS_3                1                 41
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  13Q LOSS MUTATED        2      4      0
  13Q LOSS WILD-TYPE     52     49     24
D54V3, multiclass
        clus
vv       13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  CLUS_1                2                 52
  CLUS_2                4                 49
  CLUS_3                0                 24
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  13Q LOSS MUTATED        0      3      2      1
  13Q LOSS WILD-TYPE     20     38     16     51
D54V4, multiclass
        clus
vv       13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  CLUS_1                0                 20
  CLUS_2                3                 38
  CLUS_3                2                 16
  CLUS_4                1                 51
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  13Q LOSS MUTATED        1      4      1
  13Q LOSS WILD-TYPE     33     51     41
D54V5, multiclass
        clus
vv       13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  CLUS_1                1                 33
  CLUS_2                4                 51
  CLUS_3                1                 41
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  13Q LOSS MUTATED        2      3      1
  13Q LOSS WILD-TYPE     30     40     55
D54V6, multiclass
        clus
vv       13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  CLUS_1                2                 30
  CLUS_2                3                 40
  CLUS_3                1                 55

Clustering(55) Variable = 14Q LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  14Q LOSS MUTATED        6      1      5      4      3      1
  14Q LOSS WILD-TYPE     17     23     52     42      4      1
D55V1, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  14Q LOSS MUTATED        1     11      8
  14Q LOSS WILD-TYPE     39     66     34
D55V2, multiclass
        clus
vv       14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  CLUS_1                1                 39
  CLUS_2               11                 66
  CLUS_3                8                 34
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  14Q LOSS MUTATED        8      5      1
  14Q LOSS WILD-TYPE     46     48     23
D55V3, multiclass
        clus
vv       14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  CLUS_1                8                 46
  CLUS_2                5                 48
  CLUS_3                1                 23
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  14Q LOSS MUTATED        1      3      5      5
  14Q LOSS WILD-TYPE     19     38     13     47
D55V4, multiclass
        clus
vv       14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  CLUS_1                1                 19
  CLUS_2                3                 38
  CLUS_3                5                 13
  CLUS_4                5                 47
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  14Q LOSS MUTATED        5      5      4
  14Q LOSS WILD-TYPE     29     50     38
D55V5, multiclass
        clus
vv       14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  CLUS_1                5                 29
  CLUS_2                5                 50
  CLUS_3                4                 38
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  14Q LOSS MUTATED        6      3      5
  14Q LOSS WILD-TYPE     26     40     51
D55V6, multiclass
        clus
vv       14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  CLUS_1                6                 26
  CLUS_2                3                 40
  CLUS_3                5                 51

Clustering(56) Variable = 15Q LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  15Q LOSS MUTATED        1      0      1      0      1      0
  15Q LOSS WILD-TYPE     22     24     56     46      6      2
D56V1, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  15Q LOSS MUTATED        0      1      2
  15Q LOSS WILD-TYPE     40     76     40
D56V2, multiclass
        clus
vv       15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  CLUS_1                0                 40
  CLUS_2                1                 76
  CLUS_3                2                 40
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  15Q LOSS MUTATED        1      0      0
  15Q LOSS WILD-TYPE     53     53     24
D56V3, multiclass
[1] "Remove cluster labels:" "15Q LOSS MUTATED"      
clus
  15Q LOSS MUTATED 15Q LOSS WILD-TYPE 
                 1                130 
        TCGA-P7-A5NY         TCGA-P8-A5KC         TCGA-P8-A5KD 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-P8-A6RX         TCGA-P8-A6RY         TCGA-PR-A5PG 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-PR-A5PH         TCGA-QR-A6GO         TCGA-QR-A6GR 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-QR-A6GS         TCGA-QR-A6GT         TCGA-QR-A6GU 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-QR-A6GX         TCGA-QR-A6GY         TCGA-QR-A6GZ 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-QR-A6H0         TCGA-QR-A6H1         TCGA-QR-A6H2 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-QR-A6H3         TCGA-QR-A6H5         TCGA-QR-A6H6 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-QR-A700         TCGA-QR-A702         TCGA-QR-A70C 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-QR-A70D         TCGA-QR-A70E         TCGA-QR-A70G 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-QR-A70H         TCGA-QR-A70I         TCGA-QR-A70J 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-QR-A70K         TCGA-QR-A70N         TCGA-QR-A70P 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-QR-A70R         TCGA-QR-A70W         TCGA-QR-A70X 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-QR-A7IN         TCGA-QR-A7IP         TCGA-QT-A5XJ 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-QT-A5XK         TCGA-QT-A5XL         TCGA-QT-A5XM 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-QT-A5XN         TCGA-QT-A5XO         TCGA-QT-A5XP 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-QT-A69Q         TCGA-QT-A7U0         TCGA-RM-A68T 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-RM-A68W         TCGA-RT-A6Y9         TCGA-RT-A6YA 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-RT-A6YC         TCGA-RW-A67V         TCGA-RW-A67W 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-RW-A67X         TCGA-RW-A67Y         TCGA-RW-A680 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-RW-A681         TCGA-RW-A685         TCGA-RW-A686 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-RW-A688         TCGA-RW-A689         TCGA-RW-A68A 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-RW-A68B         TCGA-RW-A68C         TCGA-RW-A68D 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-RW-A68F         TCGA-RW-A68G         TCGA-RW-A7CZ 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-RW-A7D0         TCGA-RW-A8AZ         TCGA-RX-A8JQ 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-S7-A7WL         TCGA-S7-A7WM         TCGA-S7-A7WN 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-S7-A7WO         TCGA-S7-A7WP         TCGA-S7-A7WT 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-S7-A7WU         TCGA-S7-A7WV         TCGA-S7-A7WW 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-S7-A7WX         TCGA-S7-A7X0         TCGA-SA-A6C2 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-SP-A6QC         TCGA-SP-A6QD         TCGA-SP-A6QF 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-SP-A6QG         TCGA-SP-A6QK         TCGA-SQ-A6I4 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-SQ-A6I6         TCGA-SR-A6MP         TCGA-SR-A6MT 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-SR-A6MU         TCGA-SR-A6MX         TCGA-SR-A6N0 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-TT-A6YJ         TCGA-TT-A6YK         TCGA-TT-A6YN 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-TT-A6YO         TCGA-W2-A7HA         TCGA-W2-A7HB 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-W2-A7HC         TCGA-W2-A7HD         TCGA-W2-A7HE 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-WB-A80K         TCGA-WB-A80L         TCGA-WB-A80M 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-WB-A80N         TCGA-WB-A80O         TCGA-WB-A80Y 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-WB-A814         TCGA-WB-A815         TCGA-WB-A816 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-WB-A817         TCGA-WB-A81D         TCGA-WB-A81E 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-WB-A81F         TCGA-WB-A81G         TCGA-WB-A81H 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-WB-A81M         TCGA-WB-A81N         TCGA-WB-A81P 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-WB-A81Q         TCGA-WB-A81R         TCGA-WB-A81W 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-WB-A820         TCGA-WB-A821         TCGA-WB-A822 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-XG-A823 
"15Q LOSS WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  15Q LOSS MUTATED        0      0      0      1
  15Q LOSS WILD-TYPE     20     41     18     51
D56V4, multiclass
[1] "Remove cluster labels:" "15Q LOSS MUTATED"      
clus
  15Q LOSS MUTATED 15Q LOSS WILD-TYPE 
                 1                130 
        TCGA-P7-A5NY         TCGA-P8-A5KC         TCGA-P8-A5KD 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-P8-A6RX         TCGA-P8-A6RY         TCGA-PR-A5PG 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-PR-A5PH         TCGA-QR-A6GO         TCGA-QR-A6GR 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-QR-A6GS         TCGA-QR-A6GT         TCGA-QR-A6GU 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-QR-A6GX         TCGA-QR-A6GY         TCGA-QR-A6GZ 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-QR-A6H0         TCGA-QR-A6H1         TCGA-QR-A6H2 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-QR-A6H3         TCGA-QR-A6H5         TCGA-QR-A6H6 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-QR-A700         TCGA-QR-A702         TCGA-QR-A70C 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-QR-A70D         TCGA-QR-A70E         TCGA-QR-A70G 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-QR-A70H         TCGA-QR-A70I         TCGA-QR-A70J 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-QR-A70K         TCGA-QR-A70N         TCGA-QR-A70P 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-QR-A70R         TCGA-QR-A70W         TCGA-QR-A70X 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-QR-A7IN         TCGA-QR-A7IP         TCGA-QT-A5XJ 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-QT-A5XK         TCGA-QT-A5XL         TCGA-QT-A5XM 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-QT-A5XN         TCGA-QT-A5XO         TCGA-QT-A5XP 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-QT-A69Q         TCGA-QT-A7U0         TCGA-RM-A68T 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-RM-A68W         TCGA-RT-A6Y9         TCGA-RT-A6YA 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-RT-A6YC         TCGA-RW-A67V         TCGA-RW-A67W 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-RW-A67X         TCGA-RW-A67Y         TCGA-RW-A680 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-RW-A681         TCGA-RW-A685         TCGA-RW-A686 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-RW-A688         TCGA-RW-A689         TCGA-RW-A68A 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-RW-A68B         TCGA-RW-A68C         TCGA-RW-A68D 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-RW-A68F         TCGA-RW-A68G         TCGA-RW-A7CZ 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-RW-A7D0         TCGA-RW-A8AZ         TCGA-RX-A8JQ 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-S7-A7WL         TCGA-S7-A7WM         TCGA-S7-A7WN 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-S7-A7WO         TCGA-S7-A7WP         TCGA-S7-A7WT 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-S7-A7WU         TCGA-S7-A7WV         TCGA-S7-A7WW 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-S7-A7WX         TCGA-S7-A7X0         TCGA-SA-A6C2 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-SP-A6QC         TCGA-SP-A6QD         TCGA-SP-A6QF 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-SP-A6QG         TCGA-SP-A6QK         TCGA-SQ-A6I4 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-SQ-A6I6         TCGA-SR-A6MP         TCGA-SR-A6MT 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-SR-A6MU         TCGA-SR-A6MX         TCGA-SR-A6N0 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-TT-A6YJ         TCGA-TT-A6YK         TCGA-TT-A6YN 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-TT-A6YO         TCGA-W2-A7HA         TCGA-W2-A7HB 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-W2-A7HC         TCGA-W2-A7HD         TCGA-W2-A7HE 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-WB-A80K         TCGA-WB-A80L         TCGA-WB-A80M 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-WB-A80N         TCGA-WB-A80O         TCGA-WB-A80Y 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-WB-A814         TCGA-WB-A815         TCGA-WB-A816 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-WB-A817         TCGA-WB-A81D         TCGA-WB-A81E 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-WB-A81F         TCGA-WB-A81G         TCGA-WB-A81H 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-WB-A81M         TCGA-WB-A81N         TCGA-WB-A81P 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-WB-A81Q         TCGA-WB-A81R         TCGA-WB-A81W 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-WB-A820         TCGA-WB-A821         TCGA-WB-A822 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-XG-A823 
"15Q LOSS WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  15Q LOSS MUTATED        1      0      0
  15Q LOSS WILD-TYPE     33     55     42
D56V5, multiclass
[1] "Remove cluster labels:" "15Q LOSS MUTATED"      
clus
  15Q LOSS MUTATED 15Q LOSS WILD-TYPE 
                 1                130 
        TCGA-P7-A5NY         TCGA-P8-A5KC         TCGA-P8-A5KD 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-P8-A6RX         TCGA-P8-A6RY         TCGA-PR-A5PG 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-PR-A5PH         TCGA-QR-A6GO         TCGA-QR-A6GR 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-QR-A6GS         TCGA-QR-A6GT         TCGA-QR-A6GU 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-QR-A6GX         TCGA-QR-A6GY         TCGA-QR-A6GZ 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-QR-A6H0         TCGA-QR-A6H1         TCGA-QR-A6H2 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-QR-A6H3         TCGA-QR-A6H5         TCGA-QR-A6H6 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-QR-A700         TCGA-QR-A702         TCGA-QR-A70C 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-QR-A70D         TCGA-QR-A70E         TCGA-QR-A70G 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-QR-A70H         TCGA-QR-A70I         TCGA-QR-A70J 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-QR-A70K         TCGA-QR-A70N         TCGA-QR-A70P 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-QR-A70R         TCGA-QR-A70W         TCGA-QR-A70X 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-QR-A7IN         TCGA-QR-A7IP         TCGA-QT-A5XJ 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-QT-A5XK         TCGA-QT-A5XL         TCGA-QT-A5XM 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-QT-A5XN         TCGA-QT-A5XO         TCGA-QT-A5XP 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-QT-A69Q         TCGA-QT-A7U0         TCGA-RM-A68T 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-RM-A68W         TCGA-RT-A6Y9         TCGA-RT-A6YA 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-RT-A6YC         TCGA-RW-A67V         TCGA-RW-A67W 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-RW-A67X         TCGA-RW-A67Y         TCGA-RW-A680 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-RW-A681         TCGA-RW-A685         TCGA-RW-A686 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-RW-A688         TCGA-RW-A689         TCGA-RW-A68A 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-RW-A68B         TCGA-RW-A68C         TCGA-RW-A68D 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-RW-A68F         TCGA-RW-A68G         TCGA-RW-A7CZ 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-RW-A7D0         TCGA-RW-A8AZ         TCGA-RX-A8JQ 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-S7-A7WL         TCGA-S7-A7WM         TCGA-S7-A7WN 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-S7-A7WO         TCGA-S7-A7WP         TCGA-S7-A7WT 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-S7-A7WU         TCGA-S7-A7WV         TCGA-S7-A7WW 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-S7-A7WX         TCGA-S7-A7X0         TCGA-SA-A6C2 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-SP-A6QC         TCGA-SP-A6QD         TCGA-SP-A6QF 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-SP-A6QG         TCGA-SP-A6QK         TCGA-SQ-A6I4 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-SQ-A6I6         TCGA-SR-A6MP         TCGA-SR-A6MT 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-SR-A6MU         TCGA-SR-A6MX         TCGA-SR-A6N0 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-TT-A6YJ         TCGA-TT-A6YK         TCGA-TT-A6YN 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-TT-A6YO         TCGA-W2-A7HA         TCGA-W2-A7HB 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-W2-A7HC         TCGA-W2-A7HD         TCGA-W2-A7HE 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-WB-A80K         TCGA-WB-A80L         TCGA-WB-A80M 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-WB-A80N         TCGA-WB-A80O         TCGA-WB-A80Y 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-WB-A814         TCGA-WB-A815         TCGA-WB-A816 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-WB-A817         TCGA-WB-A81D         TCGA-WB-A81E 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-WB-A81F         TCGA-WB-A81G         TCGA-WB-A81H 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-WB-A81M         TCGA-WB-A81N         TCGA-WB-A81P 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-WB-A81Q         TCGA-WB-A81R         TCGA-WB-A81W 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-WB-A820         TCGA-WB-A821         TCGA-WB-A822 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-XG-A823 
"15Q LOSS WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  15Q LOSS MUTATED        0      0      1
  15Q LOSS WILD-TYPE     32     43     55
D56V6, multiclass
[1] "Remove cluster labels:" "15Q LOSS MUTATED"      
clus
  15Q LOSS MUTATED 15Q LOSS WILD-TYPE 
                 1                130 
        TCGA-P7-A5NY         TCGA-P8-A5KC         TCGA-P8-A5KD 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-P8-A6RX         TCGA-P8-A6RY         TCGA-PR-A5PG 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-PR-A5PH         TCGA-QR-A6GO         TCGA-QR-A6GR 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-QR-A6GS         TCGA-QR-A6GT         TCGA-QR-A6GU 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-QR-A6GX         TCGA-QR-A6GY         TCGA-QR-A6GZ 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-QR-A6H0         TCGA-QR-A6H1         TCGA-QR-A6H2 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-QR-A6H3         TCGA-QR-A6H5         TCGA-QR-A6H6 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-QR-A700         TCGA-QR-A702         TCGA-QR-A70C 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-QR-A70D         TCGA-QR-A70E         TCGA-QR-A70G 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-QR-A70H         TCGA-QR-A70I         TCGA-QR-A70J 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-QR-A70K         TCGA-QR-A70N         TCGA-QR-A70P 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-QR-A70R         TCGA-QR-A70W         TCGA-QR-A70X 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-QR-A7IN         TCGA-QR-A7IP         TCGA-QT-A5XJ 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-QT-A5XK         TCGA-QT-A5XL         TCGA-QT-A5XM 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-QT-A5XN         TCGA-QT-A5XO         TCGA-QT-A5XP 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-QT-A69Q         TCGA-QT-A7U0         TCGA-RM-A68T 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-RM-A68W         TCGA-RT-A6Y9         TCGA-RT-A6YA 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-RT-A6YC         TCGA-RW-A67V         TCGA-RW-A67W 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-RW-A67X         TCGA-RW-A67Y         TCGA-RW-A680 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-RW-A681         TCGA-RW-A685         TCGA-RW-A686 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-RW-A688         TCGA-RW-A689         TCGA-RW-A68A 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-RW-A68B         TCGA-RW-A68C         TCGA-RW-A68D 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-RW-A68F         TCGA-RW-A68G         TCGA-RW-A7CZ 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-RW-A7D0         TCGA-RW-A8AZ         TCGA-RX-A8JQ 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-S7-A7WL         TCGA-S7-A7WM         TCGA-S7-A7WN 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-S7-A7WO         TCGA-S7-A7WP         TCGA-S7-A7WT 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-S7-A7WU         TCGA-S7-A7WV         TCGA-S7-A7WW 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-S7-A7WX         TCGA-S7-A7X0         TCGA-SA-A6C2 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-SP-A6QC         TCGA-SP-A6QD         TCGA-SP-A6QF 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-SP-A6QG         TCGA-SP-A6QK         TCGA-SQ-A6I4 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-SQ-A6I6         TCGA-SR-A6MP         TCGA-SR-A6MT 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-SR-A6MU         TCGA-SR-A6MX         TCGA-SR-A6N0 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-TT-A6YJ         TCGA-TT-A6YK         TCGA-TT-A6YN 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-TT-A6YO         TCGA-W2-A7HA         TCGA-W2-A7HB 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-W2-A7HC         TCGA-W2-A7HD         TCGA-W2-A7HE 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-WB-A80K         TCGA-WB-A80L         TCGA-WB-A80M 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-WB-A80N         TCGA-WB-A80O         TCGA-WB-A80Y 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-WB-A814         TCGA-WB-A815         TCGA-WB-A816 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-WB-A817         TCGA-WB-A81D         TCGA-WB-A81E 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-WB-A81F         TCGA-WB-A81G         TCGA-WB-A81H 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-WB-A81M         TCGA-WB-A81N         TCGA-WB-A81P 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-WB-A81Q         TCGA-WB-A81R         TCGA-WB-A81W 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-WB-A820         TCGA-WB-A821         TCGA-WB-A822 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-XG-A823 
"15Q LOSS WILD-TYPE" 

Clustering(57) Variable = 16P LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  16P LOSS MUTATED        3      0      1      3      0      1
  16P LOSS WILD-TYPE     20     24     56     43      7      1
D57V1, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16P LOSS MUTATED        5      3      0
  16P LOSS WILD-TYPE     35     74     42
D57V2, multiclass
        clus
vv       16P LOSS MUTATED 16P LOSS WILD-TYPE
  CLUS_1                5                 35
  CLUS_2                3                 74
  CLUS_3                0                 42
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16P LOSS MUTATED        5      2      0
  16P LOSS WILD-TYPE     49     51     24
D57V3, multiclass
        clus
vv       16P LOSS MUTATED 16P LOSS WILD-TYPE
  CLUS_1                5                 49
  CLUS_2                2                 51
  CLUS_3                0                 24
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  16P LOSS MUTATED        0      1      1      5
  16P LOSS WILD-TYPE     20     40     17     47
D57V4, multiclass
        clus
vv       16P LOSS MUTATED 16P LOSS WILD-TYPE
  CLUS_1                0                 20
  CLUS_2                1                 40
  CLUS_3                1                 17
  CLUS_4                5                 47
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16P LOSS MUTATED        3      3      1
  16P LOSS WILD-TYPE     31     52     41
D57V5, multiclass
        clus
vv       16P LOSS MUTATED 16P LOSS WILD-TYPE
  CLUS_1                3                 31
  CLUS_2                3                 52
  CLUS_3                1                 41
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16P LOSS MUTATED        1      2      4
  16P LOSS WILD-TYPE     31     41     52
D57V6, multiclass
        clus
vv       16P LOSS MUTATED 16P LOSS WILD-TYPE
  CLUS_1                1                 31
  CLUS_2                2                 41
  CLUS_3                4                 52

Clustering(58) Variable = 16Q LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  16Q LOSS MUTATED        0      0      0      3      0      1
  16Q LOSS WILD-TYPE     23     24     57     43      7      1
D58V1, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16Q LOSS MUTATED        2      2      0
  16Q LOSS WILD-TYPE     38     75     42
D58V2, multiclass
        clus
vv       16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  CLUS_1                2                 38
  CLUS_2                2                 75
  CLUS_3                0                 42
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16Q LOSS MUTATED        2      1      0
  16Q LOSS WILD-TYPE     52     52     24
D58V3, multiclass
        clus
vv       16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  CLUS_1                2                 52
  CLUS_2                1                 52
  CLUS_3                0                 24
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  16Q LOSS MUTATED        0      0      1      2
  16Q LOSS WILD-TYPE     20     41     17     50
D58V4, multiclass
        clus
vv       16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  CLUS_1                0                 20
  CLUS_2                0                 41
  CLUS_3                1                 17
  CLUS_4                2                 50
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16Q LOSS MUTATED        2      1      0
  16Q LOSS WILD-TYPE     32     54     42
D58V5, multiclass
        clus
vv       16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  CLUS_1                2                 32
  CLUS_2                1                 54
  CLUS_3                0                 42
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16Q LOSS MUTATED        1      0      2
  16Q LOSS WILD-TYPE     31     43     54
D58V6, multiclass
        clus
vv       16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  CLUS_1                1                 31
  CLUS_2                0                 43
  CLUS_3                2                 54

Clustering(59) Variable = 17P LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  17P LOSS MUTATED        6      7     24     22      0      2
  17P LOSS WILD-TYPE     17     17     33     24      7      0
D59V1, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17P LOSS MUTATED        9     40     12
  17P LOSS WILD-TYPE     31     37     30
D59V2, multiclass
        clus
vv       17P LOSS MUTATED 17P LOSS WILD-TYPE
  CLUS_1                9                 31
  CLUS_2               40                 37
  CLUS_3               12                 30
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17P LOSS MUTATED       17     28      4
  17P LOSS WILD-TYPE     37     25     20
D59V3, multiclass
        clus
vv       17P LOSS MUTATED 17P LOSS WILD-TYPE
  CLUS_1               17                 37
  CLUS_2               28                 25
  CLUS_3                4                 20
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  17P LOSS MUTATED        4     23      7     15
  17P LOSS WILD-TYPE     16     18     11     37
D59V4, multiclass
        clus
vv       17P LOSS MUTATED 17P LOSS WILD-TYPE
  CLUS_1                4                 16
  CLUS_2               23                 18
  CLUS_3                7                 11
  CLUS_4               15                 37
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17P LOSS MUTATED       10     29     10
  17P LOSS WILD-TYPE     24     26     32
D59V5, multiclass
        clus
vv       17P LOSS MUTATED 17P LOSS WILD-TYPE
  CLUS_1               10                 24
  CLUS_2               29                 26
  CLUS_3               10                 32
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17P LOSS MUTATED       11     23     15
  17P LOSS WILD-TYPE     21     20     41
D59V6, multiclass
        clus
vv       17P LOSS MUTATED 17P LOSS WILD-TYPE
  CLUS_1               11                 21
  CLUS_2               23                 20
  CLUS_3               15                 41

Clustering(60) Variable = 17Q LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  17Q LOSS MUTATED        2      1      4     13      0      0
  17Q LOSS WILD-TYPE     21     23     53     33      7      2
D60V1, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17Q LOSS MUTATED        5      9      6
  17Q LOSS WILD-TYPE     35     68     36
D60V2, multiclass
        clus
vv       17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  CLUS_1                5                 35
  CLUS_2                9                 68
  CLUS_3                6                 36
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17Q LOSS MUTATED        6     10      1
  17Q LOSS WILD-TYPE     48     43     23
D60V3, multiclass
        clus
vv       17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  CLUS_1                6                 48
  CLUS_2               10                 43
  CLUS_3                1                 23
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  17Q LOSS MUTATED        0     10      1      6
  17Q LOSS WILD-TYPE     20     31     17     46
D60V4, multiclass
        clus
vv       17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  CLUS_1                0                 20
  CLUS_2               10                 31
  CLUS_3                1                 17
  CLUS_4                6                 46
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17Q LOSS MUTATED        5     11      1
  17Q LOSS WILD-TYPE     29     44     41
D60V5, multiclass
        clus
vv       17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  CLUS_1                5                 29
  CLUS_2               11                 44
  CLUS_3                1                 41
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17Q LOSS MUTATED        1      9      7
  17Q LOSS WILD-TYPE     31     34     49
D60V6, multiclass
        clus
vv       17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  CLUS_1                1                 31
  CLUS_2                9                 34
  CLUS_3                7                 49

Clustering(61) Variable = 18P LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  18P LOSS MUTATED        1      4      6      4      1      0
  18P LOSS WILD-TYPE     22     20     51     42      6      2
D61V1, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18P LOSS MUTATED        4      9      3
  18P LOSS WILD-TYPE     36     68     39
D61V2, multiclass
        clus
vv       18P LOSS MUTATED 18P LOSS WILD-TYPE
  CLUS_1                4                 36
  CLUS_2                9                 68
  CLUS_3                3                 39
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18P LOSS MUTATED        8      4      1
  18P LOSS WILD-TYPE     46     49     23
D61V3, multiclass
        clus
vv       18P LOSS MUTATED 18P LOSS WILD-TYPE
  CLUS_1                8                 46
  CLUS_2                4                 49
  CLUS_3                1                 23
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  18P LOSS MUTATED        0      4      3      6
  18P LOSS WILD-TYPE     20     37     15     46
D61V4, multiclass
        clus
vv       18P LOSS MUTATED 18P LOSS WILD-TYPE
  CLUS_1                0                 20
  CLUS_2                4                 37
  CLUS_3                3                 15
  CLUS_4                6                 46
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18P LOSS MUTATED        5      4      4
  18P LOSS WILD-TYPE     29     51     38
D61V5, multiclass
        clus
vv       18P LOSS MUTATED 18P LOSS WILD-TYPE
  CLUS_1                5                 29
  CLUS_2                4                 51
  CLUS_3                4                 38
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18P LOSS MUTATED        2      4      7
  18P LOSS WILD-TYPE     30     39     49
D61V6, multiclass
        clus
vv       18P LOSS MUTATED 18P LOSS WILD-TYPE
  CLUS_1                2                 30
  CLUS_2                4                 39
  CLUS_3                7                 49

Clustering(62) Variable = 18Q LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  18Q LOSS MUTATED        0      0      2      3      1      0
  18Q LOSS WILD-TYPE     23     24     55     43      6      2
D62V1, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18Q LOSS MUTATED        2      3      1
  18Q LOSS WILD-TYPE     38     74     41
D62V2, multiclass
        clus
vv       18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  CLUS_1                2                 38
  CLUS_2                3                 74
  CLUS_3                1                 41
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18Q LOSS MUTATED        4      0      1
  18Q LOSS WILD-TYPE     50     53     23
D62V3, multiclass
        clus
vv       18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  CLUS_1                4                 50
  CLUS_2                0                 53
  CLUS_3                1                 23
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  18Q LOSS MUTATED        1      0      0      4
  18Q LOSS WILD-TYPE     19     41     18     48
D62V4, multiclass
        clus
vv       18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  CLUS_1                1                 19
  CLUS_2                0                 41
  CLUS_3                0                 18
  CLUS_4                4                 48
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18Q LOSS MUTATED        3      1      1
  18Q LOSS WILD-TYPE     31     54     41
D62V5, multiclass
        clus
vv       18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  CLUS_1                3                 31
  CLUS_2                1                 54
  CLUS_3                1                 41
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18Q LOSS MUTATED        1      0      4
  18Q LOSS WILD-TYPE     31     43     52
D62V6, multiclass
        clus
vv       18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  CLUS_1                1                 31
  CLUS_2                0                 43
  CLUS_3                4                 52

Clustering(63) Variable = 19Q LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  19Q LOSS MUTATED        1      0      3      1      0      1
  19Q LOSS WILD-TYPE     22     24     54     45      7      1
D63V1, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19Q LOSS MUTATED        1      3      2
  19Q LOSS WILD-TYPE     39     74     40
D63V2, multiclass
        clus
vv       19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  CLUS_1                1                 39
  CLUS_2                3                 74
  CLUS_3                2                 40
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19Q LOSS MUTATED        3      0      1
  19Q LOSS WILD-TYPE     51     53     23
D63V3, multiclass
        clus
vv       19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  CLUS_1                3                 51
  CLUS_2                0                 53
  CLUS_3                1                 23
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  19Q LOSS MUTATED        0      1      1      2
  19Q LOSS WILD-TYPE     20     40     17     50
D63V4, multiclass
        clus
vv       19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  CLUS_1                0                 20
  CLUS_2                1                 40
  CLUS_3                1                 17
  CLUS_4                2                 50
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19Q LOSS MUTATED        1      1      2
  19Q LOSS WILD-TYPE     33     54     40
D63V5, multiclass
        clus
vv       19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  CLUS_1                1                 33
  CLUS_2                1                 54
  CLUS_3                2                 40
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19Q LOSS MUTATED        1      1      2
  19Q LOSS WILD-TYPE     31     42     54
D63V6, multiclass
        clus
vv       19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  CLUS_1                1                 31
  CLUS_2                1                 42
  CLUS_3                2                 54

Clustering(64) Variable = 20Q LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  20Q LOSS MUTATED        0      0      1      2      0      0
  20Q LOSS WILD-TYPE     23     24     56     44      7      2
D64V1, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20Q LOSS MUTATED        1      1      1
  20Q LOSS WILD-TYPE     39     76     41
D64V2, multiclass
        clus
vv       20Q LOSS MUTATED 20Q LOSS WILD-TYPE
  CLUS_1                1                 39
  CLUS_2                1                 76
  CLUS_3                1                 41
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20Q LOSS MUTATED        1      1      0
  20Q LOSS WILD-TYPE     53     52     24
D64V3, multiclass
[1] "Remove cluster labels:" "20Q LOSS MUTATED"      
clus
  20Q LOSS MUTATED 20Q LOSS WILD-TYPE 
                 2                129 
        TCGA-P7-A5NY         TCGA-P8-A5KC         TCGA-P8-A5KD 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-P8-A6RX         TCGA-P8-A6RY         TCGA-PR-A5PG 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-PR-A5PH         TCGA-QR-A6GO         TCGA-QR-A6GR 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-QR-A6GS         TCGA-QR-A6GT         TCGA-QR-A6GU 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-QR-A6GX         TCGA-QR-A6GY         TCGA-QR-A6GZ 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-QR-A6H0         TCGA-QR-A6H1         TCGA-QR-A6H2 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-QR-A6H3         TCGA-QR-A6H5         TCGA-QR-A6H6 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-QR-A700         TCGA-QR-A702         TCGA-QR-A70C 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-QR-A70D         TCGA-QR-A70E         TCGA-QR-A70G 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-QR-A70H         TCGA-QR-A70I         TCGA-QR-A70J 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-QR-A70K         TCGA-QR-A70N         TCGA-QR-A70P 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-QR-A70R         TCGA-QR-A70W         TCGA-QR-A70X 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-QR-A7IN         TCGA-QR-A7IP         TCGA-QT-A5XJ 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-QT-A5XK         TCGA-QT-A5XL         TCGA-QT-A5XM 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-QT-A5XN         TCGA-QT-A5XO         TCGA-QT-A5XP 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-QT-A69Q         TCGA-QT-A7U0         TCGA-RM-A68T 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-RT-A6Y9         TCGA-RT-A6YA         TCGA-RT-A6YC 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-RW-A67V         TCGA-RW-A67W         TCGA-RW-A67X 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-RW-A67Y         TCGA-RW-A680         TCGA-RW-A681 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-RW-A685         TCGA-RW-A686         TCGA-RW-A688 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-RW-A689         TCGA-RW-A68A         TCGA-RW-A68B 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-RW-A68C         TCGA-RW-A68D         TCGA-RW-A68F 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-RW-A68G         TCGA-RW-A7CZ         TCGA-RW-A7D0 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-RW-A8AZ         TCGA-RX-A8JQ         TCGA-S7-A7WL 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-S7-A7WM         TCGA-S7-A7WN         TCGA-S7-A7WO 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-S7-A7WP         TCGA-S7-A7WT         TCGA-S7-A7WU 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-S7-A7WV         TCGA-S7-A7WW         TCGA-S7-A7WX 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-S7-A7X0         TCGA-SA-A6C2         TCGA-SP-A6QC 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-SP-A6QD         TCGA-SP-A6QF         TCGA-SP-A6QG 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-SP-A6QK         TCGA-SQ-A6I4         TCGA-SQ-A6I6 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-SR-A6MP         TCGA-SR-A6MT         TCGA-SR-A6MU 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-SR-A6MV         TCGA-SR-A6MX         TCGA-SR-A6N0 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-TT-A6YJ         TCGA-TT-A6YK         TCGA-TT-A6YN 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-TT-A6YO         TCGA-W2-A7HA         TCGA-W2-A7HB 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-W2-A7HD         TCGA-W2-A7HE         TCGA-WB-A80K 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-WB-A80L         TCGA-WB-A80M         TCGA-WB-A80N 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-WB-A80O         TCGA-WB-A80Y         TCGA-WB-A814 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-WB-A815         TCGA-WB-A816         TCGA-WB-A817 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-WB-A81D         TCGA-WB-A81E         TCGA-WB-A81F 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-WB-A81G         TCGA-WB-A81H         TCGA-WB-A81M 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-WB-A81N         TCGA-WB-A81P         TCGA-WB-A81Q 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-WB-A81R         TCGA-WB-A81W         TCGA-WB-A820 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-WB-A821         TCGA-WB-A822         TCGA-XG-A823 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  20Q LOSS MUTATED        0      1      0      1
  20Q LOSS WILD-TYPE     20     40     18     51
D64V4, multiclass
[1] "Remove cluster labels:" "20Q LOSS MUTATED"      
clus
  20Q LOSS MUTATED 20Q LOSS WILD-TYPE 
                 2                129 
        TCGA-P7-A5NY         TCGA-P8-A5KC         TCGA-P8-A5KD 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-P8-A6RX         TCGA-P8-A6RY         TCGA-PR-A5PG 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-PR-A5PH         TCGA-QR-A6GO         TCGA-QR-A6GR 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-QR-A6GS         TCGA-QR-A6GT         TCGA-QR-A6GU 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-QR-A6GX         TCGA-QR-A6GY         TCGA-QR-A6GZ 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-QR-A6H0         TCGA-QR-A6H1         TCGA-QR-A6H2 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-QR-A6H3         TCGA-QR-A6H5         TCGA-QR-A6H6 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-QR-A700         TCGA-QR-A702         TCGA-QR-A70C 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-QR-A70D         TCGA-QR-A70E         TCGA-QR-A70G 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-QR-A70H         TCGA-QR-A70I         TCGA-QR-A70J 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-QR-A70K         TCGA-QR-A70N         TCGA-QR-A70P 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-QR-A70R         TCGA-QR-A70W         TCGA-QR-A70X 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-QR-A7IN         TCGA-QR-A7IP         TCGA-QT-A5XJ 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-QT-A5XK         TCGA-QT-A5XL         TCGA-QT-A5XM 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-QT-A5XN         TCGA-QT-A5XO         TCGA-QT-A5XP 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-QT-A69Q         TCGA-QT-A7U0         TCGA-RM-A68T 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-RT-A6Y9         TCGA-RT-A6YA         TCGA-RT-A6YC 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-RW-A67V         TCGA-RW-A67W         TCGA-RW-A67X 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-RW-A67Y         TCGA-RW-A680         TCGA-RW-A681 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-RW-A685         TCGA-RW-A686         TCGA-RW-A688 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-RW-A689         TCGA-RW-A68A         TCGA-RW-A68B 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-RW-A68C         TCGA-RW-A68D         TCGA-RW-A68F 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-RW-A68G         TCGA-RW-A7CZ         TCGA-RW-A7D0 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-RW-A8AZ         TCGA-RX-A8JQ         TCGA-S7-A7WL 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-S7-A7WM         TCGA-S7-A7WN         TCGA-S7-A7WO 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-S7-A7WP         TCGA-S7-A7WT         TCGA-S7-A7WU 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-S7-A7WV         TCGA-S7-A7WW         TCGA-S7-A7WX 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-S7-A7X0         TCGA-SA-A6C2         TCGA-SP-A6QC 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-SP-A6QD         TCGA-SP-A6QF         TCGA-SP-A6QG 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-SP-A6QK         TCGA-SQ-A6I4         TCGA-SQ-A6I6 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-SR-A6MP         TCGA-SR-A6MT         TCGA-SR-A6MU 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-SR-A6MV         TCGA-SR-A6MX         TCGA-SR-A6N0 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-TT-A6YJ         TCGA-TT-A6YK         TCGA-TT-A6YN 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-TT-A6YO         TCGA-W2-A7HA         TCGA-W2-A7HB 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-W2-A7HD         TCGA-W2-A7HE         TCGA-WB-A80K 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-WB-A80L         TCGA-WB-A80M         TCGA-WB-A80N 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-WB-A80O         TCGA-WB-A80Y         TCGA-WB-A814 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-WB-A815         TCGA-WB-A816         TCGA-WB-A817 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-WB-A81D         TCGA-WB-A81E         TCGA-WB-A81F 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-WB-A81G         TCGA-WB-A81H         TCGA-WB-A81M 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-WB-A81N         TCGA-WB-A81P         TCGA-WB-A81Q 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-WB-A81R         TCGA-WB-A81W         TCGA-WB-A820 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-WB-A821         TCGA-WB-A822         TCGA-XG-A823 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20Q LOSS MUTATED        1      1      0
  20Q LOSS WILD-TYPE     33     54     42
D64V5, multiclass
[1] "Remove cluster labels:" "20Q LOSS MUTATED"      
clus
  20Q LOSS MUTATED 20Q LOSS WILD-TYPE 
                 2                129 
        TCGA-P7-A5NY         TCGA-P8-A5KC         TCGA-P8-A5KD 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-P8-A6RX         TCGA-P8-A6RY         TCGA-PR-A5PG 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-PR-A5PH         TCGA-QR-A6GO         TCGA-QR-A6GR 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-QR-A6GS         TCGA-QR-A6GT         TCGA-QR-A6GU 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-QR-A6GX         TCGA-QR-A6GY         TCGA-QR-A6GZ 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-QR-A6H0         TCGA-QR-A6H1         TCGA-QR-A6H2 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-QR-A6H3         TCGA-QR-A6H5         TCGA-QR-A6H6 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-QR-A700         TCGA-QR-A702         TCGA-QR-A70C 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-QR-A70D         TCGA-QR-A70E         TCGA-QR-A70G 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-QR-A70H         TCGA-QR-A70I         TCGA-QR-A70J 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-QR-A70K         TCGA-QR-A70N         TCGA-QR-A70P 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-QR-A70R         TCGA-QR-A70W         TCGA-QR-A70X 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-QR-A7IN         TCGA-QR-A7IP         TCGA-QT-A5XJ 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-QT-A5XK         TCGA-QT-A5XL         TCGA-QT-A5XM 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-QT-A5XN         TCGA-QT-A5XO         TCGA-QT-A5XP 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-QT-A69Q         TCGA-QT-A7U0         TCGA-RM-A68T 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-RT-A6Y9         TCGA-RT-A6YA         TCGA-RT-A6YC 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-RW-A67V         TCGA-RW-A67W         TCGA-RW-A67X 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-RW-A67Y         TCGA-RW-A680         TCGA-RW-A681 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-RW-A685         TCGA-RW-A686         TCGA-RW-A688 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-RW-A689         TCGA-RW-A68A         TCGA-RW-A68B 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-RW-A68C         TCGA-RW-A68D         TCGA-RW-A68F 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-RW-A68G         TCGA-RW-A7CZ         TCGA-RW-A7D0 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-RW-A8AZ         TCGA-RX-A8JQ         TCGA-S7-A7WL 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-S7-A7WM         TCGA-S7-A7WN         TCGA-S7-A7WO 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-S7-A7WP         TCGA-S7-A7WT         TCGA-S7-A7WU 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-S7-A7WV         TCGA-S7-A7WW         TCGA-S7-A7WX 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-S7-A7X0         TCGA-SA-A6C2         TCGA-SP-A6QC 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-SP-A6QD         TCGA-SP-A6QF         TCGA-SP-A6QG 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-SP-A6QK         TCGA-SQ-A6I4         TCGA-SQ-A6I6 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-SR-A6MP         TCGA-SR-A6MT         TCGA-SR-A6MU 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-SR-A6MV         TCGA-SR-A6MX         TCGA-SR-A6N0 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-TT-A6YJ         TCGA-TT-A6YK         TCGA-TT-A6YN 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-TT-A6YO         TCGA-W2-A7HA         TCGA-W2-A7HB 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-W2-A7HD         TCGA-W2-A7HE         TCGA-WB-A80K 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-WB-A80L         TCGA-WB-A80M         TCGA-WB-A80N 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-WB-A80O         TCGA-WB-A80Y         TCGA-WB-A814 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-WB-A815         TCGA-WB-A816         TCGA-WB-A817 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-WB-A81D         TCGA-WB-A81E         TCGA-WB-A81F 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-WB-A81G         TCGA-WB-A81H         TCGA-WB-A81M 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-WB-A81N         TCGA-WB-A81P         TCGA-WB-A81Q 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-WB-A81R         TCGA-WB-A81W         TCGA-WB-A820 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-WB-A821         TCGA-WB-A822         TCGA-XG-A823 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20Q LOSS MUTATED        0      1      1
  20Q LOSS WILD-TYPE     32     42     55
D64V6, multiclass
[1] "Remove cluster labels:" "20Q LOSS MUTATED"      
clus
  20Q LOSS MUTATED 20Q LOSS WILD-TYPE 
                 2                129 
        TCGA-P7-A5NY         TCGA-P8-A5KC         TCGA-P8-A5KD 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-P8-A6RX         TCGA-P8-A6RY         TCGA-PR-A5PG 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-PR-A5PH         TCGA-QR-A6GO         TCGA-QR-A6GR 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-QR-A6GS         TCGA-QR-A6GT         TCGA-QR-A6GU 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-QR-A6GX         TCGA-QR-A6GY         TCGA-QR-A6GZ 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-QR-A6H0         TCGA-QR-A6H1         TCGA-QR-A6H2 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-QR-A6H3         TCGA-QR-A6H5         TCGA-QR-A6H6 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-QR-A700         TCGA-QR-A702         TCGA-QR-A70C 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-QR-A70D         TCGA-QR-A70E         TCGA-QR-A70G 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-QR-A70H         TCGA-QR-A70I         TCGA-QR-A70J 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-QR-A70K         TCGA-QR-A70N         TCGA-QR-A70P 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-QR-A70R         TCGA-QR-A70W         TCGA-QR-A70X 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-QR-A7IN         TCGA-QR-A7IP         TCGA-QT-A5XJ 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-QT-A5XK         TCGA-QT-A5XL         TCGA-QT-A5XM 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-QT-A5XN         TCGA-QT-A5XO         TCGA-QT-A5XP 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-QT-A69Q         TCGA-QT-A7U0         TCGA-RM-A68T 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-RT-A6Y9         TCGA-RT-A6YA         TCGA-RT-A6YC 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-RW-A67V         TCGA-RW-A67W         TCGA-RW-A67X 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-RW-A67Y         TCGA-RW-A680         TCGA-RW-A681 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-RW-A685         TCGA-RW-A686         TCGA-RW-A688 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-RW-A689         TCGA-RW-A68A         TCGA-RW-A68B 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-RW-A68C         TCGA-RW-A68D         TCGA-RW-A68F 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-RW-A68G         TCGA-RW-A7CZ         TCGA-RW-A7D0 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-RW-A8AZ         TCGA-RX-A8JQ         TCGA-S7-A7WL 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-S7-A7WM         TCGA-S7-A7WN         TCGA-S7-A7WO 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-S7-A7WP         TCGA-S7-A7WT         TCGA-S7-A7WU 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-S7-A7WV         TCGA-S7-A7WW         TCGA-S7-A7WX 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-S7-A7X0         TCGA-SA-A6C2         TCGA-SP-A6QC 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-SP-A6QD         TCGA-SP-A6QF         TCGA-SP-A6QG 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-SP-A6QK         TCGA-SQ-A6I4         TCGA-SQ-A6I6 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-SR-A6MP         TCGA-SR-A6MT         TCGA-SR-A6MU 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-SR-A6MV         TCGA-SR-A6MX         TCGA-SR-A6N0 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-TT-A6YJ         TCGA-TT-A6YK         TCGA-TT-A6YN 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-TT-A6YO         TCGA-W2-A7HA         TCGA-W2-A7HB 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-W2-A7HD         TCGA-W2-A7HE         TCGA-WB-A80K 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-WB-A80L         TCGA-WB-A80M         TCGA-WB-A80N 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-WB-A80O         TCGA-WB-A80Y         TCGA-WB-A814 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-WB-A815         TCGA-WB-A816         TCGA-WB-A817 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-WB-A81D         TCGA-WB-A81E         TCGA-WB-A81F 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-WB-A81G         TCGA-WB-A81H         TCGA-WB-A81M 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-WB-A81N         TCGA-WB-A81P         TCGA-WB-A81Q 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-WB-A81R         TCGA-WB-A81W         TCGA-WB-A820 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-WB-A821         TCGA-WB-A822         TCGA-XG-A823 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 

Clustering(65) Variable = 21Q LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  21Q LOSS MUTATED        7      1     10     14      1      1
  21Q LOSS WILD-TYPE     16     23     47     32      6      1
D65V1, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  21Q LOSS MUTATED        4     17     13
  21Q LOSS WILD-TYPE     36     60     29
D65V2, multiclass
        clus
vv       21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  CLUS_1                4                 36
  CLUS_2               17                 60
  CLUS_3               13                 29
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  21Q LOSS MUTATED       12     10      6
  21Q LOSS WILD-TYPE     42     43     18
D65V3, multiclass
        clus
vv       21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  CLUS_1               12                 42
  CLUS_2               10                 43
  CLUS_3                6                 18
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  21Q LOSS MUTATED        5      7      6     10
  21Q LOSS WILD-TYPE     15     34     12     42
D65V4, multiclass
        clus
vv       21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  CLUS_1                5                 15
  CLUS_2                7                 34
  CLUS_3                6                 12
  CLUS_4               10                 42
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  21Q LOSS MUTATED        9     10      9
  21Q LOSS WILD-TYPE     25     45     33
D65V5, multiclass
        clus
vv       21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  CLUS_1                9                 25
  CLUS_2               10                 45
  CLUS_3                9                 33
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  21Q LOSS MUTATED       11      8      9
  21Q LOSS WILD-TYPE     21     35     47
D65V6, multiclass
        clus
vv       21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  CLUS_1               11                 21
  CLUS_2                8                 35
  CLUS_3                9                 47

Clustering(66) Variable = 22Q LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  22Q LOSS MUTATED        8      4     29     14      1      0
  22Q LOSS WILD-TYPE     15     20     28     32      6      2
D66V1, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  22Q LOSS MUTATED       10     35     11
  22Q LOSS WILD-TYPE     30     42     31
D66V2, multiclass
        clus
vv       22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  CLUS_1               10                 30
  CLUS_2               35                 42
  CLUS_3               11                 31
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  22Q LOSS MUTATED       12     24      8
  22Q LOSS WILD-TYPE     42     29     16
D66V3, multiclass
        clus
vv       22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  CLUS_1               12                 42
  CLUS_2               24                 29
  CLUS_3                8                 16
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  22Q LOSS MUTATED        8     19      5     12
  22Q LOSS WILD-TYPE     12     22     13     40
D66V4, multiclass
        clus
vv       22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  CLUS_1                8                 12
  CLUS_2               19                 22
  CLUS_3                5                 13
  CLUS_4               12                 40
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  22Q LOSS MUTATED        7     25     12
  22Q LOSS WILD-TYPE     27     30     30
D66V5, multiclass
        clus
vv       22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  CLUS_1                7                 27
  CLUS_2               25                 30
  CLUS_3               12                 30
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  22Q LOSS MUTATED       12     21     11
  22Q LOSS WILD-TYPE     20     22     45
D66V6, multiclass
        clus
vv       22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  CLUS_1               12                 20
  CLUS_2               21                 22
  CLUS_3               11                 45

Clustering(67) Variable = XQ LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  XQ LOSS MUTATED        7      0     24     13      4      1
  XQ LOSS WILD-TYPE     16     24     33     33      3      1
D67V1, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  XQ LOSS MUTATED        9     34      6
  XQ LOSS WILD-TYPE     31     43     36
D67V2, multiclass
        clus
vv       XQ LOSS MUTATED XQ LOSS WILD-TYPE
  CLUS_1               9                31
  CLUS_2              34                43
  CLUS_3               6                36
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  XQ LOSS MUTATED       12     23      3
  XQ LOSS WILD-TYPE     42     30     21
D67V3, multiclass
        clus
vv       XQ LOSS MUTATED XQ LOSS WILD-TYPE
  CLUS_1              12                42
  CLUS_2              23                30
  CLUS_3               3                21
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  XQ LOSS MUTATED        2     19      5     12
  XQ LOSS WILD-TYPE     18     22     13     40
D67V4, multiclass
        clus
vv       XQ LOSS MUTATED XQ LOSS WILD-TYPE
  CLUS_1               2                18
  CLUS_2              19                22
  CLUS_3               5                13
  CLUS_4              12                40
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  XQ LOSS MUTATED        7     25      6
  XQ LOSS WILD-TYPE     27     30     36
D67V5, multiclass
        clus
vv       XQ LOSS MUTATED XQ LOSS WILD-TYPE
  CLUS_1               7                27
  CLUS_2              25                30
  CLUS_3               6                36
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  XQ LOSS MUTATED        7     21     10
  XQ LOSS WILD-TYPE     25     22     46
D67V6, multiclass
        clus
vv       XQ LOSS MUTATED XQ LOSS WILD-TYPE
  CLUS_1               7                25
  CLUS_2              21                22
  CLUS_3              10                46
> q(save="no")
