
R version 2.10.1 (2009-12-14)
Copyright (C) 2009 The R Foundation for Statistical Computing
ISBN 3-900051-07-0

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> source("/xchip/tcga/gdac_prod/applications/process_mgmt/firehose_task_registry/tcga-gdac/GDAC_Correlate_Genomic_Events/broadinstitute.org/cancer.genome.analysis/10441/13/Correlate_Genomic_Events.R")
> result <- main("/xchip/tcga/gdac_prod/applications/process_mgmt/firehose_task_registry/tcga-gdac/GDAC_Correlate_Genomic_Events/broadinstitute.org/cancer.genome.analysis/10441/13/", "-nF=/xchip/tcga/Tools/Nozzle/v1.current", "-tTRUE", "-iD=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/PCPG-TP/8282828/transformed.cor.cli.txt", "-iC=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering/PCPG-TP/8282704/PCPG-TP.transferedmergedcluster.txt", "-fF=", "-fC=3", "-fH=5", "-fW=9", "-fP=OUT", "-cP=0.05", "-cQ=0.25", "-MF=ONLYSIG", "-oT=PCPG-TP", "-nV=Nozzle.R1", "-OP=MUTSIG", "-iT=", "-iX=")
[1] "terrence_modification_tag"
[1] TRUE
[1] "nver"          "-nV=Nozzle.R1"
[1] "nfn"                                 "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "successfully load Nozzle.R1"
[1] "ofn"         "-oT=PCPG-TP"
[1] "opt"        "-OP=MUTSIG"
[1] "tl"   "-iT="
[1] "dx"   "-iX="
[1] "opt"    "MUTSIG"
[1] "dx" ""  
[1] "cfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering/PCPG-TP/8282704/PCPG-TP.transferedmergedcluster.txt"
[1] "dfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/PCPG-TP/8282828/transformed.cor.cli.txt"

nPatients in clinical file=179, in cluster file=159, common to both=159
[1]  27 159
[1] "AMP PEAK 1(1Q21.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 1(1Q21.3) MUTATED AMP PEAK 1(1Q21.3) WILD-TYPE 
                          30                          129 
  AMP PEAK 1(1Q21.3) MUTATED AMP PEAK 1(1Q21.3) WILD-TYPE 
                          30                          129 
[1] "AMP PEAK 2(4Q31.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 2(4Q31.1) MUTATED AMP PEAK 2(4Q31.1) WILD-TYPE 
                          12                          147 
  AMP PEAK 2(4Q31.1) MUTATED AMP PEAK 2(4Q31.1) WILD-TYPE 
                          12                          147 
[1] "AMP PEAK 3(12Q13.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 3(12Q13.3) MUTATED AMP PEAK 3(12Q13.3) WILD-TYPE 
                           16                           143 
  AMP PEAK 3(12Q13.3) MUTATED AMP PEAK 3(12Q13.3) WILD-TYPE 
                           16                           143 
[1] "AMP PEAK 4(14Q24.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 4(14Q24.3) MUTATED AMP PEAK 4(14Q24.3) WILD-TYPE 
                           10                           149 
  AMP PEAK 4(14Q24.3) MUTATED AMP PEAK 4(14Q24.3) WILD-TYPE 
                           10                           149 
[1] "AMP PEAK 5(17Q21.31) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 5(17Q21.31) MUTATED AMP PEAK 5(17Q21.31) WILD-TYPE 
                            15                            144 
  AMP PEAK 5(17Q21.31) MUTATED AMP PEAK 5(17Q21.31) WILD-TYPE 
                            15                            144 
[1] "DEL PEAK  1(1P36.32) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  1(1P36.32) MUTATED DEL PEAK  1(1P36.32) WILD-TYPE 
                           101                             58 
  DEL PEAK  1(1P36.32) MUTATED DEL PEAK  1(1P36.32) WILD-TYPE 
                           101                             58 
[1] "DEL PEAK  2(1P12) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  2(1P12) MUTATED DEL PEAK  2(1P12) WILD-TYPE 
                        111                          48 
  DEL PEAK  2(1P12) MUTATED DEL PEAK  2(1P12) WILD-TYPE 
                        111                          48 
[1] "DEL PEAK  3(1Q44) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  3(1Q44) MUTATED DEL PEAK  3(1Q44) WILD-TYPE 
                         21                         138 
  DEL PEAK  3(1Q44) MUTATED DEL PEAK  3(1Q44) WILD-TYPE 
                         21                         138 
[1] "DEL PEAK  4(3P24.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  4(3P24.1) MUTATED DEL PEAK  4(3P24.1) WILD-TYPE 
                           60                            99 
  DEL PEAK  4(3P24.1) MUTATED DEL PEAK  4(3P24.1) WILD-TYPE 
                           60                            99 
[1] "DEL PEAK  5(3Q26.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  5(3Q26.1) MUTATED DEL PEAK  5(3Q26.1) WILD-TYPE 
                           93                            66 
  DEL PEAK  5(3Q26.1) MUTATED DEL PEAK  5(3Q26.1) WILD-TYPE 
                           93                            66 
[1] "DEL PEAK  6(4Q22.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  6(4Q22.1) MUTATED DEL PEAK  6(4Q22.1) WILD-TYPE 
                           14                           145 
  DEL PEAK  6(4Q22.1) MUTATED DEL PEAK  6(4Q22.1) WILD-TYPE 
                           14                           145 
[1] "DEL PEAK  7(4Q32.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  7(4Q32.3) MUTATED DEL PEAK  7(4Q32.3) WILD-TYPE 
                           14                           145 
  DEL PEAK  7(4Q32.3) MUTATED DEL PEAK  7(4Q32.3) WILD-TYPE 
                           14                           145 
[1] "DEL PEAK  8(5Q23.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  8(5Q23.1) MUTATED DEL PEAK  8(5Q23.1) WILD-TYPE 
                           11                           148 
  DEL PEAK  8(5Q23.1) MUTATED DEL PEAK  8(5Q23.1) WILD-TYPE 
                           11                           148 
[1] "DEL PEAK  9(6P12.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  9(6P12.3) MUTATED DEL PEAK  9(6P12.3) WILD-TYPE 
                            8                           151 
  DEL PEAK  9(6P12.3) MUTATED DEL PEAK  9(6P12.3) WILD-TYPE 
                            8                           151 
[1] "DEL PEAK 10(6Q16.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 10(6Q16.1) MUTATED DEL PEAK 10(6Q16.1) WILD-TYPE 
                           23                           136 
  DEL PEAK 10(6Q16.1) MUTATED DEL PEAK 10(6Q16.1) WILD-TYPE 
                           23                           136 
[1] "DEL PEAK 11(8P22) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 11(8P22) MUTATED DEL PEAK 11(8P22) WILD-TYPE 
                         24                         135 
  DEL PEAK 11(8P22) MUTATED DEL PEAK 11(8P22) WILD-TYPE 
                         24                         135 
[1] "DEL PEAK 12(9P24.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 12(9P24.2) MUTATED DEL PEAK 12(9P24.2) WILD-TYPE 
                           15                           144 
  DEL PEAK 12(9P24.2) MUTATED DEL PEAK 12(9P24.2) WILD-TYPE 
                           15                           144 
[1] "DEL PEAK 13(9Q21.12) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 13(9Q21.12) MUTATED DEL PEAK 13(9Q21.12) WILD-TYPE 
                            14                            145 
  DEL PEAK 13(9Q21.12) MUTATED DEL PEAK 13(9Q21.12) WILD-TYPE 
                            14                            145 
[1] "DEL PEAK 14(11P15.4) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 14(11P15.4) MUTATED DEL PEAK 14(11P15.4) WILD-TYPE 
                            56                            103 
  DEL PEAK 14(11P15.4) MUTATED DEL PEAK 14(11P15.4) WILD-TYPE 
                            56                            103 
[1] "DEL PEAK 15(11Q22.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 15(11Q22.1) MUTATED DEL PEAK 15(11Q22.1) WILD-TYPE 
                            44                            115 
  DEL PEAK 15(11Q22.1) MUTATED DEL PEAK 15(11Q22.1) WILD-TYPE 
                            44                            115 
[1] "DEL PEAK 16(12Q21.32) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 16(12Q21.32) MUTATED DEL PEAK 16(12Q21.32) WILD-TYPE 
                              3                             156 
  DEL PEAK 16(12Q21.32) MUTATED DEL PEAK 16(12Q21.32) WILD-TYPE 
                              3                             156 
[1] "DEL PEAK 17(16Q21) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 17(16Q21) MUTATED DEL PEAK 17(16Q21) WILD-TYPE 
                           5                          154 
  DEL PEAK 17(16Q21) MUTATED DEL PEAK 17(16Q21) WILD-TYPE 
                           5                          154 
[1] "DEL PEAK 18(17P13.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 18(17P13.2) MUTATED DEL PEAK 18(17P13.2) WILD-TYPE 
                            64                             95 
  DEL PEAK 18(17P13.2) MUTATED DEL PEAK 18(17P13.2) WILD-TYPE 
                            64                             95 
[1] "DEL PEAK 19(17Q11.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 19(17Q11.2) MUTATED DEL PEAK 19(17Q11.2) WILD-TYPE 
                            42                            117 
  DEL PEAK 19(17Q11.2) MUTATED DEL PEAK 19(17Q11.2) WILD-TYPE 
                            42                            117 
[1] "DEL PEAK 20(22Q12.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 20(22Q12.3) MUTATED DEL PEAK 20(22Q12.3) WILD-TYPE 
                            59                            100 
  DEL PEAK 20(22Q12.3) MUTATED DEL PEAK 20(22Q12.3) WILD-TYPE 
                            59                            100 
[1] "DEL PEAK 21(22Q13.31) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 21(22Q13.31) MUTATED DEL PEAK 21(22Q13.31) WILD-TYPE 
                             64                              95 
  DEL PEAK 21(22Q13.31) MUTATED DEL PEAK 21(22Q13.31) WILD-TYPE 
                             64                              95 
[1] "DEL PEAK 22(XP21.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 22(XP21.1) MUTATED DEL PEAK 22(XP21.1) WILD-TYPE 
                           46                           113 
  DEL PEAK 22(XP21.1) MUTATED DEL PEAK 22(XP21.1) WILD-TYPE 
                           46                           113 
[1] "terrence_modification_tag"
[1] TRUE
[1] "data2feature, selection="
[1] "CN_CNMF"                     "METHLYATION_CNMF"           
[3] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
[5] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"

Input Data has 6 rows and 159 columns.

Variable 1:'CN_CNMF':	nDistinctValues=6,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 2:'METHLYATION_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 3:'MIRSEQ_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 4:'MIRSEQ_CHIERARCHICAL':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 5:'MIRSEQ_MATURE_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 6:'MIRSEQ_MATURE_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
[1] "rownames(nsurv.mat)"
[1] "CN_CNMF"                     "METHLYATION_CNMF"           
[3] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
[5] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"
[1] "TUMOR.?STAGE"
[1] "TUMOR.?GRADE"
[1] "PATHOLOGY.T"
[1] "PATHOLOGY.N"
Output Data has 159 columns, 0 survival variables, and 6 non-survival variables.
CN_CNMF, nv=6, binary=FALSE, numeric=FALSE
METHLYATION_CNMF, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_CNMF, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_CHIERARCHICAL, nv=4, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CNMF, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE

Clustering(1) Variable = AMP PEAK 1(1Q21.3) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 1(1Q21.3) MUTATED       21      1      5      3      0      0
  AMP PEAK 1(1Q21.3) WILD-TYPE      2     23     52     43      7      2
D1V1, multiclass
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 1(1Q21.3) MUTATED        9     15      6
  AMP PEAK 1(1Q21.3) WILD-TYPE     31     62     36
D1V2, multiclass
        clus
vv       AMP PEAK 1(1Q21.3) MUTATED AMP PEAK 1(1Q21.3) WILD-TYPE
  CLUS_1                          9                           31
  CLUS_2                         15                           62
  CLUS_3                          6                           36
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 1(1Q21.3) MUTATED       11     10      4
  AMP PEAK 1(1Q21.3) WILD-TYPE     43     43     20
D1V3, multiclass
        clus
vv       AMP PEAK 1(1Q21.3) MUTATED AMP PEAK 1(1Q21.3) WILD-TYPE
  CLUS_1                         11                           43
  CLUS_2                         10                           43
  CLUS_3                          4                           20
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 1(1Q21.3) MUTATED        1      8      5     11
  AMP PEAK 1(1Q21.3) WILD-TYPE     19     33     13     41
D1V4, multiclass
        clus
vv       AMP PEAK 1(1Q21.3) MUTATED AMP PEAK 1(1Q21.3) WILD-TYPE
  CLUS_1                          1                           19
  CLUS_2                          8                           33
  CLUS_3                          5                           13
  CLUS_4                         11                           41
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 1(1Q21.3) MUTATED        4     10     11
  AMP PEAK 1(1Q21.3) WILD-TYPE     30     45     31
D1V5, multiclass
        clus
vv       AMP PEAK 1(1Q21.3) MUTATED AMP PEAK 1(1Q21.3) WILD-TYPE
  CLUS_1                          4                           30
  CLUS_2                         10                           45
  CLUS_3                         11                           31
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 1(1Q21.3) MUTATED        4     10     11
  AMP PEAK 1(1Q21.3) WILD-TYPE     28     33     45
D1V6, multiclass
        clus
vv       AMP PEAK 1(1Q21.3) MUTATED AMP PEAK 1(1Q21.3) WILD-TYPE
  CLUS_1                          4                           28
  CLUS_2                         10                           33
  CLUS_3                         11                           45

Clustering(2) Variable = AMP PEAK 2(4Q31.1) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 2(4Q31.1) MUTATED        1      4      7      0      0      0
  AMP PEAK 2(4Q31.1) WILD-TYPE     22     20     50     46      7      2
D2V1, multiclass
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 2(4Q31.1) MUTATED        0      7      5
  AMP PEAK 2(4Q31.1) WILD-TYPE     40     70     37
D2V2, multiclass
        clus
vv       AMP PEAK 2(4Q31.1) MUTATED AMP PEAK 2(4Q31.1) WILD-TYPE
  CLUS_1                          0                           40
  CLUS_2                          7                           70
  CLUS_3                          5                           37
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 2(4Q31.1) MUTATED        3      4      2
  AMP PEAK 2(4Q31.1) WILD-TYPE     51     49     22
D2V3, multiclass
        clus
vv       AMP PEAK 2(4Q31.1) MUTATED AMP PEAK 2(4Q31.1) WILD-TYPE
  CLUS_1                          3                           51
  CLUS_2                          4                           49
  CLUS_3                          2                           22
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 2(4Q31.1) MUTATED        0      3      5      1
  AMP PEAK 2(4Q31.1) WILD-TYPE     20     38     13     51
D2V4, multiclass
        clus
vv       AMP PEAK 2(4Q31.1) MUTATED AMP PEAK 2(4Q31.1) WILD-TYPE
  CLUS_1                          0                           20
  CLUS_2                          3                           38
  CLUS_3                          5                           13
  CLUS_4                          1                           51
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 2(4Q31.1) MUTATED        0      5      4
  AMP PEAK 2(4Q31.1) WILD-TYPE     34     50     38
D2V5, multiclass
        clus
vv       AMP PEAK 2(4Q31.1) MUTATED AMP PEAK 2(4Q31.1) WILD-TYPE
  CLUS_1                          0                           34
  CLUS_2                          5                           50
  CLUS_3                          4                           38
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 2(4Q31.1) MUTATED        3      2      4
  AMP PEAK 2(4Q31.1) WILD-TYPE     29     41     52
D2V6, multiclass
        clus
vv       AMP PEAK 2(4Q31.1) MUTATED AMP PEAK 2(4Q31.1) WILD-TYPE
  CLUS_1                          3                           29
  CLUS_2                          2                           41
  CLUS_3                          4                           52

Clustering(3) Variable = AMP PEAK 3(12Q13.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 3(12Q13.3) MUTATED        3      1      2     10      0      0
  AMP PEAK 3(12Q13.3) WILD-TYPE     20     23     55     36      7      2
D3V1, multiclass
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 3(12Q13.3) MUTATED        6      4      6
  AMP PEAK 3(12Q13.3) WILD-TYPE     34     73     36
D3V2, multiclass
        clus
vv       AMP PEAK 3(12Q13.3) MUTATED AMP PEAK 3(12Q13.3) WILD-TYPE
  CLUS_1                           6                            34
  CLUS_2                           4                            73
  CLUS_3                           6                            36
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 3(12Q13.3) MUTATED        8      5      0
  AMP PEAK 3(12Q13.3) WILD-TYPE     46     48     24
D3V3, multiclass
        clus
vv       AMP PEAK 3(12Q13.3) MUTATED AMP PEAK 3(12Q13.3) WILD-TYPE
  CLUS_1                           8                            46
  CLUS_2                           5                            48
  CLUS_3                           0                            24
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 3(12Q13.3) MUTATED        1      3      0      9
  AMP PEAK 3(12Q13.3) WILD-TYPE     19     38     18     43
D3V4, multiclass
        clus
vv       AMP PEAK 3(12Q13.3) MUTATED AMP PEAK 3(12Q13.3) WILD-TYPE
  CLUS_1                           1                            19
  CLUS_2                           3                            38
  CLUS_3                           0                            18
  CLUS_4                           9                            43
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 3(12Q13.3) MUTATED        8      4      1
  AMP PEAK 3(12Q13.3) WILD-TYPE     26     51     41
D3V5, multiclass
        clus
vv       AMP PEAK 3(12Q13.3) MUTATED AMP PEAK 3(12Q13.3) WILD-TYPE
  CLUS_1                           8                            26
  CLUS_2                           4                            51
  CLUS_3                           1                            41
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 3(12Q13.3) MUTATED        1      3      9
  AMP PEAK 3(12Q13.3) WILD-TYPE     31     40     47
D3V6, multiclass
        clus
vv       AMP PEAK 3(12Q13.3) MUTATED AMP PEAK 3(12Q13.3) WILD-TYPE
  CLUS_1                           1                            31
  CLUS_2                           3                            40
  CLUS_3                           9                            47

Clustering(4) Variable = AMP PEAK 4(14Q24.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 4(14Q24.3) MUTATED        0      0      1      9      0      0
  AMP PEAK 4(14Q24.3) WILD-TYPE     23     24     56     37      7      2
D4V1, multiclass
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 4(14Q24.3) MUTATED        5      4      1
  AMP PEAK 4(14Q24.3) WILD-TYPE     35     73     41
D4V2, multiclass
        clus
vv       AMP PEAK 4(14Q24.3) MUTATED AMP PEAK 4(14Q24.3) WILD-TYPE
  CLUS_1                           5                            35
  CLUS_2                           4                            73
  CLUS_3                           1                            41
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 4(14Q24.3) MUTATED        5      3      2
  AMP PEAK 4(14Q24.3) WILD-TYPE     49     50     22
D4V3, multiclass
        clus
vv       AMP PEAK 4(14Q24.3) MUTATED AMP PEAK 4(14Q24.3) WILD-TYPE
  CLUS_1                           5                            49
  CLUS_2                           3                            50
  CLUS_3                           2                            22
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 4(14Q24.3) MUTATED        1      2      1      6
  AMP PEAK 4(14Q24.3) WILD-TYPE     19     39     17     46
D4V4, multiclass
        clus
vv       AMP PEAK 4(14Q24.3) MUTATED AMP PEAK 4(14Q24.3) WILD-TYPE
  CLUS_1                           1                            19
  CLUS_2                           2                            39
  CLUS_3                           1                            17
  CLUS_4                           6                            46
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 4(14Q24.3) MUTATED        5      5      0
  AMP PEAK 4(14Q24.3) WILD-TYPE     29     50     42
D4V5, multiclass
        clus
vv       AMP PEAK 4(14Q24.3) MUTATED AMP PEAK 4(14Q24.3) WILD-TYPE
  CLUS_1                           5                            29
  CLUS_2                           5                            50
  CLUS_3                           0                            42
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 4(14Q24.3) MUTATED        2      2      6
  AMP PEAK 4(14Q24.3) WILD-TYPE     30     41     50
D4V6, multiclass
        clus
vv       AMP PEAK 4(14Q24.3) MUTATED AMP PEAK 4(14Q24.3) WILD-TYPE
  CLUS_1                           2                            30
  CLUS_2                           2                            41
  CLUS_3                           6                            50

Clustering(5) Variable = AMP PEAK 5(17Q21.31) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 5(17Q21.31) MUTATED        4      5      5      1      0      0
  AMP PEAK 5(17Q21.31) WILD-TYPE     19     19     52     45      7      2
D5V1, multiclass
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 5(17Q21.31) MUTATED        3      7      5
  AMP PEAK 5(17Q21.31) WILD-TYPE     37     70     37
D5V2, multiclass
        clus
vv       AMP PEAK 5(17Q21.31) MUTATED AMP PEAK 5(17Q21.31) WILD-TYPE
  CLUS_1                            3                             37
  CLUS_2                            7                             70
  CLUS_3                            5                             37
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 5(17Q21.31) MUTATED        6      5      1
  AMP PEAK 5(17Q21.31) WILD-TYPE     48     48     23
D5V3, multiclass
        clus
vv       AMP PEAK 5(17Q21.31) MUTATED AMP PEAK 5(17Q21.31) WILD-TYPE
  CLUS_1                            6                             48
  CLUS_2                            5                             48
  CLUS_3                            1                             23
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 5(17Q21.31) MUTATED        0      3      6      3
  AMP PEAK 5(17Q21.31) WILD-TYPE     20     38     12     49
D5V4, multiclass
        clus
vv       AMP PEAK 5(17Q21.31) MUTATED AMP PEAK 5(17Q21.31) WILD-TYPE
  CLUS_1                            0                             20
  CLUS_2                            3                             38
  CLUS_3                            6                             12
  CLUS_4                            3                             49
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 5(17Q21.31) MUTATED        1      6      5
  AMP PEAK 5(17Q21.31) WILD-TYPE     33     49     37
D5V5, multiclass
        clus
vv       AMP PEAK 5(17Q21.31) MUTATED AMP PEAK 5(17Q21.31) WILD-TYPE
  CLUS_1                            1                             33
  CLUS_2                            6                             49
  CLUS_3                            5                             37
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 5(17Q21.31) MUTATED        2      3      7
  AMP PEAK 5(17Q21.31) WILD-TYPE     30     40     49
D5V6, multiclass
        clus
vv       AMP PEAK 5(17Q21.31) MUTATED AMP PEAK 5(17Q21.31) WILD-TYPE
  CLUS_1                            2                             30
  CLUS_2                            3                             40
  CLUS_3                            7                             49

Clustering(6) Variable = DEL PEAK  1(1P36.32) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  1(1P36.32) MUTATED       21      2     54     15      7      2
  DEL PEAK  1(1P36.32) WILD-TYPE      2     22      3     31      0      0
D6V1, multiclass
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.32) MUTATED       20     58     23
  DEL PEAK  1(1P36.32) WILD-TYPE     20     19     19
D6V2, multiclass
        clus
vv       DEL PEAK  1(1P36.32) MUTATED DEL PEAK  1(1P36.32) WILD-TYPE
  CLUS_1                           20                             20
  CLUS_2                           58                             19
  CLUS_3                           23                             19
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.32) MUTATED       28     38     14
  DEL PEAK  1(1P36.32) WILD-TYPE     26     15     10
D6V3, multiclass
        clus
vv       DEL PEAK  1(1P36.32) MUTATED DEL PEAK  1(1P36.32) WILD-TYPE
  CLUS_1                           28                             26
  CLUS_2                           38                             15
  CLUS_3                           14                             10
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  1(1P36.32) MUTATED       12     34      9     25
  DEL PEAK  1(1P36.32) WILD-TYPE      8      7      9     27
D6V4, multiclass
        clus
vv       DEL PEAK  1(1P36.32) MUTATED DEL PEAK  1(1P36.32) WILD-TYPE
  CLUS_1                           12                              8
  CLUS_2                           34                              7
  CLUS_3                            9                              9
  CLUS_4                           25                             27
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.32) MUTATED       12     40     28
  DEL PEAK  1(1P36.32) WILD-TYPE     22     15     14
D6V5, multiclass
        clus
vv       DEL PEAK  1(1P36.32) MUTATED DEL PEAK  1(1P36.32) WILD-TYPE
  CLUS_1                           12                             22
  CLUS_2                           40                             15
  CLUS_3                           28                             14
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.32) MUTATED       17     34     29
  DEL PEAK  1(1P36.32) WILD-TYPE     15      9     27
D6V6, multiclass
        clus
vv       DEL PEAK  1(1P36.32) MUTATED DEL PEAK  1(1P36.32) WILD-TYPE
  CLUS_1                           17                             15
  CLUS_2                           34                              9
  CLUS_3                           29                             27

Clustering(7) Variable = DEL PEAK  2(1P12) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  2(1P12) MUTATED       21      3     53     25      7      2
  DEL PEAK  2(1P12) WILD-TYPE      2     21      4     21      0      0
D7V1, multiclass
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P12) MUTATED       24     67     20
  DEL PEAK  2(1P12) WILD-TYPE     16     10     22
D7V2, multiclass
        clus
vv       DEL PEAK  2(1P12) MUTATED DEL PEAK  2(1P12) WILD-TYPE
  CLUS_1                        24                          16
  CLUS_2                        67                          10
  CLUS_3                        20                          22
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P12) MUTATED       31     46     12
  DEL PEAK  2(1P12) WILD-TYPE     23      7     12
D7V3, multiclass
        clus
vv       DEL PEAK  2(1P12) MUTATED DEL PEAK  2(1P12) WILD-TYPE
  CLUS_1                        31                          23
  CLUS_2                        46                           7
  CLUS_3                        12                          12
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  2(1P12) MUTATED       10     36     10     33
  DEL PEAK  2(1P12) WILD-TYPE     10      5      8     19
D7V4, multiclass
        clus
vv       DEL PEAK  2(1P12) MUTATED DEL PEAK  2(1P12) WILD-TYPE
  CLUS_1                        10                          10
  CLUS_2                        36                           5
  CLUS_3                        10                           8
  CLUS_4                        33                          19
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P12) MUTATED       18     47     24
  DEL PEAK  2(1P12) WILD-TYPE     16      8     18
D7V5, multiclass
        clus
vv       DEL PEAK  2(1P12) MUTATED DEL PEAK  2(1P12) WILD-TYPE
  CLUS_1                        18                          16
  CLUS_2                        47                           8
  CLUS_3                        24                          18
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P12) MUTATED       17     37     35
  DEL PEAK  2(1P12) WILD-TYPE     15      6     21
D7V6, multiclass
        clus
vv       DEL PEAK  2(1P12) MUTATED DEL PEAK  2(1P12) WILD-TYPE
  CLUS_1                        17                          15
  CLUS_2                        37                           6
  CLUS_3                        35                          21

Clustering(8) Variable = DEL PEAK  3(1Q44) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  3(1Q44) MUTATED        1      0      8     10      2      0
  DEL PEAK  3(1Q44) WILD-TYPE     22     24     49     36      5      2
D8V1, multiclass
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(1Q44) MUTATED        8      8      5
  DEL PEAK  3(1Q44) WILD-TYPE     32     69     37
D8V2, multiclass
        clus
vv       DEL PEAK  3(1Q44) MUTATED DEL PEAK  3(1Q44) WILD-TYPE
  CLUS_1                         8                          32
  CLUS_2                         8                          69
  CLUS_3                         5                          37
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(1Q44) MUTATED        7      6      3
  DEL PEAK  3(1Q44) WILD-TYPE     47     47     21
D8V3, multiclass
        clus
vv       DEL PEAK  3(1Q44) MUTATED DEL PEAK  3(1Q44) WILD-TYPE
  CLUS_1                         7                          47
  CLUS_2                         6                          47
  CLUS_3                         3                          21
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  3(1Q44) MUTATED        3      4      2      7
  DEL PEAK  3(1Q44) WILD-TYPE     17     37     16     45
D8V4, multiclass
        clus
vv       DEL PEAK  3(1Q44) MUTATED DEL PEAK  3(1Q44) WILD-TYPE
  CLUS_1                         3                          17
  CLUS_2                         4                          37
  CLUS_3                         2                          16
  CLUS_4                         7                          45
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(1Q44) MUTATED        8      5      3
  DEL PEAK  3(1Q44) WILD-TYPE     26     50     39
D8V5, multiclass
        clus
vv       DEL PEAK  3(1Q44) MUTATED DEL PEAK  3(1Q44) WILD-TYPE
  CLUS_1                         8                          26
  CLUS_2                         5                          50
  CLUS_3                         3                          39
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(1Q44) MUTATED        2      4     10
  DEL PEAK  3(1Q44) WILD-TYPE     30     39     46
D8V6, multiclass
        clus
vv       DEL PEAK  3(1Q44) MUTATED DEL PEAK  3(1Q44) WILD-TYPE
  CLUS_1                         2                          30
  CLUS_2                         4                          39
  CLUS_3                        10                          46

Clustering(9) Variable = DEL PEAK  4(3P24.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  4(3P24.1) MUTATED       12      1     10     33      4      0
  DEL PEAK  4(3P24.1) WILD-TYPE     11     23     47     13      3      2
D9V1, multiclass
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(3P24.1) MUTATED       23     20     17
  DEL PEAK  4(3P24.1) WILD-TYPE     17     57     25
D9V2, multiclass
        clus
vv       DEL PEAK  4(3P24.1) MUTATED DEL PEAK  4(3P24.1) WILD-TYPE
  CLUS_1                          23                            17
  CLUS_2                          20                            57
  CLUS_3                          17                            25
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(3P24.1) MUTATED       34     11      3
  DEL PEAK  4(3P24.1) WILD-TYPE     20     42     21
D9V3, multiclass
        clus
vv       DEL PEAK  4(3P24.1) MUTATED DEL PEAK  4(3P24.1) WILD-TYPE
  CLUS_1                          34                            20
  CLUS_2                          11                            42
  CLUS_3                           3                            21
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  4(3P24.1) MUTATED        2     11      4     31
  DEL PEAK  4(3P24.1) WILD-TYPE     18     30     14     21
D9V4, multiclass
        clus
vv       DEL PEAK  4(3P24.1) MUTATED DEL PEAK  4(3P24.1) WILD-TYPE
  CLUS_1                           2                            18
  CLUS_2                          11                            30
  CLUS_3                           4                            14
  CLUS_4                          31                            21
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(3P24.1) MUTATED       24     12     12
  DEL PEAK  4(3P24.1) WILD-TYPE     10     43     30
D9V5, multiclass
        clus
vv       DEL PEAK  4(3P24.1) MUTATED DEL PEAK  4(3P24.1) WILD-TYPE
  CLUS_1                          24                            10
  CLUS_2                          12                            43
  CLUS_3                          12                            30
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(3P24.1) MUTATED        6     11     31
  DEL PEAK  4(3P24.1) WILD-TYPE     26     32     25
D9V6, multiclass
        clus
vv       DEL PEAK  4(3P24.1) MUTATED DEL PEAK  4(3P24.1) WILD-TYPE
  CLUS_1                           6                            26
  CLUS_2                          11                            32
  CLUS_3                          31                            25

Clustering(10) Variable = DEL PEAK  5(3Q26.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  5(3Q26.1) MUTATED       12      0     42     32      5      2
  DEL PEAK  5(3Q26.1) WILD-TYPE     11     24     15     14      2      0
D10V1, multiclass
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(3Q26.1) MUTATED       24     47     22
  DEL PEAK  5(3Q26.1) WILD-TYPE     16     30     20
D10V2, multiclass
        clus
vv       DEL PEAK  5(3Q26.1) MUTATED DEL PEAK  5(3Q26.1) WILD-TYPE
  CLUS_1                          24                            16
  CLUS_2                          47                            30
  CLUS_3                          22                            20
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(3Q26.1) MUTATED       33     31      9
  DEL PEAK  5(3Q26.1) WILD-TYPE     21     22     15
D10V3, multiclass
        clus
vv       DEL PEAK  5(3Q26.1) MUTATED DEL PEAK  5(3Q26.1) WILD-TYPE
  CLUS_1                          33                            21
  CLUS_2                          31                            22
  CLUS_3                           9                            15
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  5(3Q26.1) MUTATED        7     29      4     33
  DEL PEAK  5(3Q26.1) WILD-TYPE     13     12     14     19
D10V4, multiclass
        clus
vv       DEL PEAK  5(3Q26.1) MUTATED DEL PEAK  5(3Q26.1) WILD-TYPE
  CLUS_1                           7                            13
  CLUS_2                          29                            12
  CLUS_3                           4                            14
  CLUS_4                          33                            19
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(3Q26.1) MUTATED       21     33     19
  DEL PEAK  5(3Q26.1) WILD-TYPE     13     22     23
D10V5, multiclass
        clus
vv       DEL PEAK  5(3Q26.1) MUTATED DEL PEAK  5(3Q26.1) WILD-TYPE
  CLUS_1                          21                            13
  CLUS_2                          33                            22
  CLUS_3                          19                            23
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(3Q26.1) MUTATED       11     29     33
  DEL PEAK  5(3Q26.1) WILD-TYPE     21     14     23
D10V6, multiclass
        clus
vv       DEL PEAK  5(3Q26.1) MUTATED DEL PEAK  5(3Q26.1) WILD-TYPE
  CLUS_1                          11                            21
  CLUS_2                          29                            14
  CLUS_3                          33                            23

Clustering(11) Variable = DEL PEAK  6(4Q22.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  6(4Q22.1) MUTATED        3      0      2      9      0      0
  DEL PEAK  6(4Q22.1) WILD-TYPE     20     24     55     37      7      2
D11V1, multiclass
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(4Q22.1) MUTATED        2      6      6
  DEL PEAK  6(4Q22.1) WILD-TYPE     38     71     36
D11V2, multiclass
        clus
vv       DEL PEAK  6(4Q22.1) MUTATED DEL PEAK  6(4Q22.1) WILD-TYPE
  CLUS_1                           2                            38
  CLUS_2                           6                            71
  CLUS_3                           6                            36
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(4Q22.1) MUTATED        8      3      1
  DEL PEAK  6(4Q22.1) WILD-TYPE     46     50     23
D11V3, multiclass
        clus
vv       DEL PEAK  6(4Q22.1) MUTATED DEL PEAK  6(4Q22.1) WILD-TYPE
  CLUS_1                           8                            46
  CLUS_2                           3                            50
  CLUS_3                           1                            23
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  6(4Q22.1) MUTATED        1      2      2      7
  DEL PEAK  6(4Q22.1) WILD-TYPE     19     39     16     45
D11V4, multiclass
        clus
vv       DEL PEAK  6(4Q22.1) MUTATED DEL PEAK  6(4Q22.1) WILD-TYPE
  CLUS_1                           1                            19
  CLUS_2                           2                            39
  CLUS_3                           2                            16
  CLUS_4                           7                            45
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(4Q22.1) MUTATED        7      4      1
  DEL PEAK  6(4Q22.1) WILD-TYPE     27     51     41
D11V5, multiclass
        clus
vv       DEL PEAK  6(4Q22.1) MUTATED DEL PEAK  6(4Q22.1) WILD-TYPE
  CLUS_1                           7                            27
  CLUS_2                           4                            51
  CLUS_3                           1                            41
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(4Q22.1) MUTATED        3      2      7
  DEL PEAK  6(4Q22.1) WILD-TYPE     29     41     49
D11V6, multiclass
        clus
vv       DEL PEAK  6(4Q22.1) MUTATED DEL PEAK  6(4Q22.1) WILD-TYPE
  CLUS_1                           3                            29
  CLUS_2                           2                            41
  CLUS_3                           7                            49

Clustering(12) Variable = DEL PEAK  7(4Q32.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  7(4Q32.3) MUTATED        2      2      1      9      0      0
  DEL PEAK  7(4Q32.3) WILD-TYPE     21     22     56     37      7      2
D12V1, multiclass
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(4Q32.3) MUTATED        1      7      6
  DEL PEAK  7(4Q32.3) WILD-TYPE     39     70     36
D12V2, multiclass
        clus
vv       DEL PEAK  7(4Q32.3) MUTATED DEL PEAK  7(4Q32.3) WILD-TYPE
  CLUS_1                           1                            39
  CLUS_2                           7                            70
  CLUS_3                           6                            36
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(4Q32.3) MUTATED        7      3      2
  DEL PEAK  7(4Q32.3) WILD-TYPE     47     50     22
D12V3, multiclass
        clus
vv       DEL PEAK  7(4Q32.3) MUTATED DEL PEAK  7(4Q32.3) WILD-TYPE
  CLUS_1                           7                            47
  CLUS_2                           3                            50
  CLUS_3                           2                            22
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  7(4Q32.3) MUTATED        2      2      2      6
  DEL PEAK  7(4Q32.3) WILD-TYPE     18     39     16     46
D12V4, multiclass
        clus
vv       DEL PEAK  7(4Q32.3) MUTATED DEL PEAK  7(4Q32.3) WILD-TYPE
  CLUS_1                           2                            18
  CLUS_2                           2                            39
  CLUS_3                           2                            16
  CLUS_4                           6                            46
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(4Q32.3) MUTATED        6      4      2
  DEL PEAK  7(4Q32.3) WILD-TYPE     28     51     40
D12V5, multiclass
        clus
vv       DEL PEAK  7(4Q32.3) MUTATED DEL PEAK  7(4Q32.3) WILD-TYPE
  CLUS_1                           6                            28
  CLUS_2                           4                            51
  CLUS_3                           2                            40
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(4Q32.3) MUTATED        4      1      7
  DEL PEAK  7(4Q32.3) WILD-TYPE     28     42     49
D12V6, multiclass
        clus
vv       DEL PEAK  7(4Q32.3) MUTATED DEL PEAK  7(4Q32.3) WILD-TYPE
  CLUS_1                           4                            28
  CLUS_2                           1                            42
  CLUS_3                           7                            49

Clustering(13) Variable = DEL PEAK  8(5Q23.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  8(5Q23.1) MUTATED        2      0      1      5      2      1
  DEL PEAK  8(5Q23.1) WILD-TYPE     21     24     56     41      5      1
D13V1, multiclass
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(5Q23.1) MUTATED        2      6      3
  DEL PEAK  8(5Q23.1) WILD-TYPE     38     71     39
D13V2, multiclass
        clus
vv       DEL PEAK  8(5Q23.1) MUTATED DEL PEAK  8(5Q23.1) WILD-TYPE
  CLUS_1                           2                            38
  CLUS_2                           6                            71
  CLUS_3                           3                            39
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(5Q23.1) MUTATED        4      4      0
  DEL PEAK  8(5Q23.1) WILD-TYPE     50     49     24
D13V3, multiclass
        clus
vv       DEL PEAK  8(5Q23.1) MUTATED DEL PEAK  8(5Q23.1) WILD-TYPE
  CLUS_1                           4                            50
  CLUS_2                           4                            49
  CLUS_3                           0                            24
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  8(5Q23.1) MUTATED        0      2      3      3
  DEL PEAK  8(5Q23.1) WILD-TYPE     20     39     15     49
D13V4, multiclass
        clus
vv       DEL PEAK  8(5Q23.1) MUTATED DEL PEAK  8(5Q23.1) WILD-TYPE
  CLUS_1                           0                            20
  CLUS_2                           2                            39
  CLUS_3                           3                            15
  CLUS_4                           3                            49
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(5Q23.1) MUTATED        2      5      1
  DEL PEAK  8(5Q23.1) WILD-TYPE     32     50     41
D13V5, multiclass
        clus
vv       DEL PEAK  8(5Q23.1) MUTATED DEL PEAK  8(5Q23.1) WILD-TYPE
  CLUS_1                           2                            32
  CLUS_2                           5                            50
  CLUS_3                           1                            41
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(5Q23.1) MUTATED        3      2      3
  DEL PEAK  8(5Q23.1) WILD-TYPE     29     41     53
D13V6, multiclass
        clus
vv       DEL PEAK  8(5Q23.1) MUTATED DEL PEAK  8(5Q23.1) WILD-TYPE
  CLUS_1                           3                            29
  CLUS_2                           2                            41
  CLUS_3                           3                            53

Clustering(14) Variable = DEL PEAK  9(6P12.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  9(6P12.3) MUTATED        1      1      2      2      1      1
  DEL PEAK  9(6P12.3) WILD-TYPE     22     23     55     44      6      1
D14V1, multiclass
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(6P12.3) MUTATED        2      2      4
  DEL PEAK  9(6P12.3) WILD-TYPE     38     75     38
D14V2, multiclass
        clus
vv       DEL PEAK  9(6P12.3) MUTATED DEL PEAK  9(6P12.3) WILD-TYPE
  CLUS_1                           2                            38
  CLUS_2                           2                            75
  CLUS_3                           4                            38
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(6P12.3) MUTATED        2      2      3
  DEL PEAK  9(6P12.3) WILD-TYPE     52     51     21
D14V3, multiclass
        clus
vv       DEL PEAK  9(6P12.3) MUTATED DEL PEAK  9(6P12.3) WILD-TYPE
  CLUS_1                           2                            52
  CLUS_2                           2                            51
  CLUS_3                           3                            21
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  9(6P12.3) MUTATED        4      1      0      2
  DEL PEAK  9(6P12.3) WILD-TYPE     16     40     18     50
D14V4, multiclass
        clus
vv       DEL PEAK  9(6P12.3) MUTATED DEL PEAK  9(6P12.3) WILD-TYPE
  CLUS_1                           4                            16
  CLUS_2                           1                            40
  CLUS_3                           0                            18
  CLUS_4                           2                            50
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(6P12.3) MUTATED        2      2      3
  DEL PEAK  9(6P12.3) WILD-TYPE     32     53     39
D14V5, multiclass
        clus
vv       DEL PEAK  9(6P12.3) MUTATED DEL PEAK  9(6P12.3) WILD-TYPE
  CLUS_1                           2                            32
  CLUS_2                           2                            53
  CLUS_3                           3                            39
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(6P12.3) MUTATED        4      1      2
  DEL PEAK  9(6P12.3) WILD-TYPE     28     42     54
D14V6, multiclass
        clus
vv       DEL PEAK  9(6P12.3) MUTATED DEL PEAK  9(6P12.3) WILD-TYPE
  CLUS_1                           4                            28
  CLUS_2                           1                            42
  CLUS_3                           2                            54

Clustering(15) Variable = DEL PEAK 10(6Q16.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 10(6Q16.1) MUTATED        1      1     15      4      1      1
  DEL PEAK 10(6Q16.1) WILD-TYPE     22     23     42     42      6      1
D15V1, multiclass
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(6Q16.1) MUTATED        2     16      5
  DEL PEAK 10(6Q16.1) WILD-TYPE     38     61     37
D15V2, multiclass
        clus
vv       DEL PEAK 10(6Q16.1) MUTATED DEL PEAK 10(6Q16.1) WILD-TYPE
  CLUS_1                           2                            38
  CLUS_2                          16                            61
  CLUS_3                           5                            37
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(6Q16.1) MUTATED        2     11      4
  DEL PEAK 10(6Q16.1) WILD-TYPE     52     42     20
D15V3, multiclass
        clus
vv       DEL PEAK 10(6Q16.1) MUTATED DEL PEAK 10(6Q16.1) WILD-TYPE
  CLUS_1                           2                            52
  CLUS_2                          11                            42
  CLUS_3                           4                            20
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 10(6Q16.1) MUTATED        4     11      0      2
  DEL PEAK 10(6Q16.1) WILD-TYPE     16     30     18     50
D15V4, multiclass
        clus
vv       DEL PEAK 10(6Q16.1) MUTATED DEL PEAK 10(6Q16.1) WILD-TYPE
  CLUS_1                           4                            16
  CLUS_2                          11                            30
  CLUS_3                           0                            18
  CLUS_4                           2                            50
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(6Q16.1) MUTATED        2     12      3
  DEL PEAK 10(6Q16.1) WILD-TYPE     32     43     39
D15V5, multiclass
        clus
vv       DEL PEAK 10(6Q16.1) MUTATED DEL PEAK 10(6Q16.1) WILD-TYPE
  CLUS_1                           2                            32
  CLUS_2                          12                            43
  CLUS_3                           3                            39
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(6Q16.1) MUTATED        4     11      2
  DEL PEAK 10(6Q16.1) WILD-TYPE     28     32     54
D15V6, multiclass
        clus
vv       DEL PEAK 10(6Q16.1) MUTATED DEL PEAK 10(6Q16.1) WILD-TYPE
  CLUS_1                           4                            28
  CLUS_2                          11                            32
  CLUS_3                           2                            54

Clustering(16) Variable = DEL PEAK 11(8P22) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 11(8P22) MUTATED        7      2      8      7      0      0
  DEL PEAK 11(8P22) WILD-TYPE     16     22     49     39      7      2
D16V1, multiclass
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(8P22) MUTATED        5     16      3
  DEL PEAK 11(8P22) WILD-TYPE     35     61     39
D16V2, multiclass
        clus
vv       DEL PEAK 11(8P22) MUTATED DEL PEAK 11(8P22) WILD-TYPE
  CLUS_1                         5                          35
  CLUS_2                        16                          61
  CLUS_3                         3                          39
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(8P22) MUTATED        5     11      3
  DEL PEAK 11(8P22) WILD-TYPE     49     42     21
D16V3, multiclass
        clus
vv       DEL PEAK 11(8P22) MUTATED DEL PEAK 11(8P22) WILD-TYPE
  CLUS_1                         5                          49
  CLUS_2                        11                          42
  CLUS_3                         3                          21
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 11(8P22) MUTATED        1     10      1      7
  DEL PEAK 11(8P22) WILD-TYPE     19     31     17     45
D16V4, multiclass
        clus
vv       DEL PEAK 11(8P22) MUTATED DEL PEAK 11(8P22) WILD-TYPE
  CLUS_1                         1                          19
  CLUS_2                        10                          31
  CLUS_3                         1                          17
  CLUS_4                         7                          45
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(8P22) MUTATED        4     12      3
  DEL PEAK 11(8P22) WILD-TYPE     30     43     39
D16V5, multiclass
        clus
vv       DEL PEAK 11(8P22) MUTATED DEL PEAK 11(8P22) WILD-TYPE
  CLUS_1                         4                          30
  CLUS_2                        12                          43
  CLUS_3                         3                          39
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(8P22) MUTATED        2     11      6
  DEL PEAK 11(8P22) WILD-TYPE     30     32     50
D16V6, multiclass
        clus
vv       DEL PEAK 11(8P22) MUTATED DEL PEAK 11(8P22) WILD-TYPE
  CLUS_1                         2                          30
  CLUS_2                        11                          32
  CLUS_3                         6                          50

Clustering(17) Variable = DEL PEAK 12(9P24.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 12(9P24.2) MUTATED        6      2      6      0      1      0
  DEL PEAK 12(9P24.2) WILD-TYPE     17     22     51     46      6      2
D17V1, multiclass
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(9P24.2) MUTATED        2     10      3
  DEL PEAK 12(9P24.2) WILD-TYPE     38     67     39
D17V2, multiclass
        clus
vv       DEL PEAK 12(9P24.2) MUTATED DEL PEAK 12(9P24.2) WILD-TYPE
  CLUS_1                           2                            38
  CLUS_2                          10                            67
  CLUS_3                           3                            39
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(9P24.2) MUTATED        5      5      2
  DEL PEAK 12(9P24.2) WILD-TYPE     49     48     22
D17V3, multiclass
        clus
vv       DEL PEAK 12(9P24.2) MUTATED DEL PEAK 12(9P24.2) WILD-TYPE
  CLUS_1                           5                            49
  CLUS_2                           5                            48
  CLUS_3                           2                            22
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 12(9P24.2) MUTATED        0      5      5      2
  DEL PEAK 12(9P24.2) WILD-TYPE     20     36     13     50
D17V4, multiclass
        clus
vv       DEL PEAK 12(9P24.2) MUTATED DEL PEAK 12(9P24.2) WILD-TYPE
  CLUS_1                           0                            20
  CLUS_2                           5                            36
  CLUS_3                           5                            13
  CLUS_4                           2                            50
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(9P24.2) MUTATED        2      7      3
  DEL PEAK 12(9P24.2) WILD-TYPE     32     48     39
D17V5, multiclass
        clus
vv       DEL PEAK 12(9P24.2) MUTATED DEL PEAK 12(9P24.2) WILD-TYPE
  CLUS_1                           2                            32
  CLUS_2                           7                            48
  CLUS_3                           3                            39
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(9P24.2) MUTATED        3      5      4
  DEL PEAK 12(9P24.2) WILD-TYPE     29     38     52
D17V6, multiclass
        clus
vv       DEL PEAK 12(9P24.2) MUTATED DEL PEAK 12(9P24.2) WILD-TYPE
  CLUS_1                           3                            29
  CLUS_2                           5                            38
  CLUS_3                           4                            52

Clustering(18) Variable = DEL PEAK 13(9Q21.12) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 13(9Q21.12) MUTATED        6      1      3      3      1      0
  DEL PEAK 13(9Q21.12) WILD-TYPE     17     23     54     43      6      2
D18V1, multiclass
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(9Q21.12) MUTATED        4      8      2
  DEL PEAK 13(9Q21.12) WILD-TYPE     36     69     40
D18V2, multiclass
        clus
vv       DEL PEAK 13(9Q21.12) MUTATED DEL PEAK 13(9Q21.12) WILD-TYPE
  CLUS_1                            4                             36
  CLUS_2                            8                             69
  CLUS_3                            2                             40
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(9Q21.12) MUTATED        6      5      0
  DEL PEAK 13(9Q21.12) WILD-TYPE     48     48     24
D18V3, multiclass
        clus
vv       DEL PEAK 13(9Q21.12) MUTATED DEL PEAK 13(9Q21.12) WILD-TYPE
  CLUS_1                            6                             48
  CLUS_2                            5                             48
  CLUS_3                            0                             24
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 13(9Q21.12) MUTATED        0      5      3      3
  DEL PEAK 13(9Q21.12) WILD-TYPE     20     36     15     49
D18V4, multiclass
        clus
vv       DEL PEAK 13(9Q21.12) MUTATED DEL PEAK 13(9Q21.12) WILD-TYPE
  CLUS_1                            0                             20
  CLUS_2                            5                             36
  CLUS_3                            3                             15
  CLUS_4                            3                             49
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(9Q21.12) MUTATED        3      6      2
  DEL PEAK 13(9Q21.12) WILD-TYPE     31     49     40
D18V5, multiclass
        clus
vv       DEL PEAK 13(9Q21.12) MUTATED DEL PEAK 13(9Q21.12) WILD-TYPE
  CLUS_1                            3                             31
  CLUS_2                            6                             49
  CLUS_3                            2                             40
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(9Q21.12) MUTATED        3      5      3
  DEL PEAK 13(9Q21.12) WILD-TYPE     29     38     53
D18V6, multiclass
        clus
vv       DEL PEAK 13(9Q21.12) MUTATED DEL PEAK 13(9Q21.12) WILD-TYPE
  CLUS_1                            3                             29
  CLUS_2                            5                             38
  CLUS_3                            3                             53

Clustering(19) Variable = DEL PEAK 14(11P15.4) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 14(11P15.4) MUTATED        8      4      1     35      6      2
  DEL PEAK 14(11P15.4) WILD-TYPE     15     20     56     11      1      0
D19V1, multiclass
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(11P15.4) MUTATED       23     14     19
  DEL PEAK 14(11P15.4) WILD-TYPE     17     63     23
D19V2, multiclass
        clus
vv       DEL PEAK 14(11P15.4) MUTATED DEL PEAK 14(11P15.4) WILD-TYPE
  CLUS_1                           23                             17
  CLUS_2                           14                             63
  CLUS_3                           19                             23
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(11P15.4) MUTATED       29     11      6
  DEL PEAK 14(11P15.4) WILD-TYPE     25     42     18
D19V3, multiclass
        clus
vv       DEL PEAK 14(11P15.4) MUTATED DEL PEAK 14(11P15.4) WILD-TYPE
  CLUS_1                           29                             25
  CLUS_2                           11                             42
  CLUS_3                            6                             18
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 14(11P15.4) MUTATED        6      4      4     32
  DEL PEAK 14(11P15.4) WILD-TYPE     14     37     14     20
D19V4, multiclass
        clus
vv       DEL PEAK 14(11P15.4) MUTATED DEL PEAK 14(11P15.4) WILD-TYPE
  CLUS_1                            6                             14
  CLUS_2                            4                             37
  CLUS_3                            4                             14
  CLUS_4                           32                             20
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(11P15.4) MUTATED       24     10     12
  DEL PEAK 14(11P15.4) WILD-TYPE     10     45     30
D19V5, multiclass
        clus
vv       DEL PEAK 14(11P15.4) MUTATED DEL PEAK 14(11P15.4) WILD-TYPE
  CLUS_1                           24                             10
  CLUS_2                           10                             45
  CLUS_3                           12                             30
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(11P15.4) MUTATED        9      6     31
  DEL PEAK 14(11P15.4) WILD-TYPE     23     37     25
D19V6, multiclass
        clus
vv       DEL PEAK 14(11P15.4) MUTATED DEL PEAK 14(11P15.4) WILD-TYPE
  CLUS_1                            9                             23
  CLUS_2                            6                             37
  CLUS_3                           31                             25

Clustering(20) Variable = DEL PEAK 15(11Q22.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 15(11Q22.1) MUTATED        6      3      2     31      1      1
  DEL PEAK 15(11Q22.1) WILD-TYPE     17     21     55     15      6      1
D20V1, multiclass
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(11Q22.1) MUTATED       15     17     12
  DEL PEAK 15(11Q22.1) WILD-TYPE     25     60     30
D20V2, multiclass
        clus
vv       DEL PEAK 15(11Q22.1) MUTATED DEL PEAK 15(11Q22.1) WILD-TYPE
  CLUS_1                           15                             25
  CLUS_2                           17                             60
  CLUS_3                           12                             30
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(11Q22.1) MUTATED       21     11      6
  DEL PEAK 15(11Q22.1) WILD-TYPE     33     42     18
D20V3, multiclass
        clus
vv       DEL PEAK 15(11Q22.1) MUTATED DEL PEAK 15(11Q22.1) WILD-TYPE
  CLUS_1                           21                             33
  CLUS_2                           11                             42
  CLUS_3                            6                             18
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 15(11Q22.1) MUTATED        6      6      3     23
  DEL PEAK 15(11Q22.1) WILD-TYPE     14     35     15     29
D20V4, multiclass
        clus
vv       DEL PEAK 15(11Q22.1) MUTATED DEL PEAK 15(11Q22.1) WILD-TYPE
  CLUS_1                            6                             14
  CLUS_2                            6                             35
  CLUS_3                            3                             15
  CLUS_4                           23                             29
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(11Q22.1) MUTATED       19     11      8
  DEL PEAK 15(11Q22.1) WILD-TYPE     15     44     34
D20V5, multiclass
        clus
vv       DEL PEAK 15(11Q22.1) MUTATED DEL PEAK 15(11Q22.1) WILD-TYPE
  CLUS_1                           19                             15
  CLUS_2                           11                             44
  CLUS_3                            8                             34
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(11Q22.1) MUTATED        7      7     24
  DEL PEAK 15(11Q22.1) WILD-TYPE     25     36     32
D20V6, multiclass
        clus
vv       DEL PEAK 15(11Q22.1) MUTATED DEL PEAK 15(11Q22.1) WILD-TYPE
  CLUS_1                            7                             25
  CLUS_2                            7                             36
  CLUS_3                           24                             32

Clustering(21) Variable = DEL PEAK 16(12Q21.32) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 16(12Q21.32) MUTATED        0      1      1      0      0      1
  DEL PEAK 16(12Q21.32) WILD-TYPE     23     23     56     46      7      1
D21V1, multiclass
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(12Q21.32) MUTATED        0      3      0
  DEL PEAK 16(12Q21.32) WILD-TYPE     40     74     42
D21V2, multiclass
        clus
vv       DEL PEAK 16(12Q21.32) MUTATED DEL PEAK 16(12Q21.32) WILD-TYPE
  CLUS_1                             0                              40
  CLUS_2                             3                              74
  CLUS_3                             0                              42
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(12Q21.32) MUTATED        0      1      0
  DEL PEAK 16(12Q21.32) WILD-TYPE     54     52     24
D21V3, multiclass
[1] "Remove cluster labels:"        "DEL PEAK 16(12Q21.32) MUTATED"
clus
  DEL PEAK 16(12Q21.32) MUTATED DEL PEAK 16(12Q21.32) WILD-TYPE 
                              1                             130 
                     TCGA-P7-A5NY                      TCGA-P8-A5KC 
"DEL PEAK 16(12Q21.32) WILD-TYPE" "DEL PEAK 16(12Q21.32) WILD-TYPE" 
                     TCGA-P8-A5KD                      TCGA-P8-A6RX 
"DEL PEAK 16(12Q21.32) WILD-TYPE" "DEL PEAK 16(12Q21.32) WILD-TYPE" 
                     TCGA-P8-A6RY                      TCGA-PR-A5PG 
"DEL PEAK 16(12Q21.32) WILD-TYPE" "DEL PEAK 16(12Q21.32) WILD-TYPE" 
                     TCGA-PR-A5PH                      TCGA-QR-A6GO 
"DEL PEAK 16(12Q21.32) WILD-TYPE" "DEL PEAK 16(12Q21.32) WILD-TYPE" 
                     TCGA-QR-A6GR                      TCGA-QR-A6GS 
"DEL PEAK 16(12Q21.32) WILD-TYPE" "DEL PEAK 16(12Q21.32) WILD-TYPE" 
                     TCGA-QR-A6GT                      TCGA-QR-A6GU 
"DEL PEAK 16(12Q21.32) WILD-TYPE" "DEL PEAK 16(12Q21.32) WILD-TYPE" 
                     TCGA-QR-A6GX                      TCGA-QR-A6GY 
"DEL PEAK 16(12Q21.32) WILD-TYPE" "DEL PEAK 16(12Q21.32) WILD-TYPE" 
                     TCGA-QR-A6GZ                      TCGA-QR-A6H0 
"DEL PEAK 16(12Q21.32) WILD-TYPE" "DEL PEAK 16(12Q21.32) WILD-TYPE" 
                     TCGA-QR-A6H1                      TCGA-QR-A6H2 
"DEL PEAK 16(12Q21.32) WILD-TYPE" "DEL PEAK 16(12Q21.32) WILD-TYPE" 
                     TCGA-QR-A6H3                      TCGA-QR-A6H5 
"DEL PEAK 16(12Q21.32) WILD-TYPE" "DEL PEAK 16(12Q21.32) WILD-TYPE" 
                     TCGA-QR-A6H6                      TCGA-QR-A700 
"DEL PEAK 16(12Q21.32) WILD-TYPE" "DEL PEAK 16(12Q21.32) WILD-TYPE" 
                     TCGA-QR-A702                      TCGA-QR-A70C 
"DEL PEAK 16(12Q21.32) WILD-TYPE" "DEL PEAK 16(12Q21.32) WILD-TYPE" 
                     TCGA-QR-A70D                      TCGA-QR-A70E 
"DEL PEAK 16(12Q21.32) WILD-TYPE" "DEL PEAK 16(12Q21.32) WILD-TYPE" 
                     TCGA-QR-A70G                      TCGA-QR-A70H 
"DEL PEAK 16(12Q21.32) WILD-TYPE" "DEL PEAK 16(12Q21.32) WILD-TYPE" 
                     TCGA-QR-A70I                      TCGA-QR-A70J 
"DEL PEAK 16(12Q21.32) WILD-TYPE" "DEL PEAK 16(12Q21.32) WILD-TYPE" 
                     TCGA-QR-A70K                      TCGA-QR-A70N 
"DEL PEAK 16(12Q21.32) WILD-TYPE" "DEL PEAK 16(12Q21.32) WILD-TYPE" 
                     TCGA-QR-A70P                      TCGA-QR-A70R 
"DEL PEAK 16(12Q21.32) WILD-TYPE" "DEL PEAK 16(12Q21.32) WILD-TYPE" 
                     TCGA-QR-A70W                      TCGA-QR-A70X 
"DEL PEAK 16(12Q21.32) WILD-TYPE" "DEL PEAK 16(12Q21.32) WILD-TYPE" 
                     TCGA-QR-A7IN                      TCGA-QR-A7IP 
"DEL PEAK 16(12Q21.32) WILD-TYPE" "DEL PEAK 16(12Q21.32) WILD-TYPE" 
                     TCGA-QT-A5XJ                      TCGA-QT-A5XK 
"DEL PEAK 16(12Q21.32) WILD-TYPE" "DEL PEAK 16(12Q21.32) WILD-TYPE" 
                     TCGA-QT-A5XL                      TCGA-QT-A5XM 
"DEL PEAK 16(12Q21.32) WILD-TYPE" "DEL PEAK 16(12Q21.32) WILD-TYPE" 
                     TCGA-QT-A5XN                      TCGA-QT-A5XO 
"DEL PEAK 16(12Q21.32) WILD-TYPE" "DEL PEAK 16(12Q21.32) WILD-TYPE" 
                     TCGA-QT-A5XP                      TCGA-QT-A69Q 
"DEL PEAK 16(12Q21.32) WILD-TYPE" "DEL PEAK 16(12Q21.32) WILD-TYPE" 
                     TCGA-QT-A7U0                      TCGA-RM-A68T 
"DEL PEAK 16(12Q21.32) WILD-TYPE" "DEL PEAK 16(12Q21.32) WILD-TYPE" 
                     TCGA-RM-A68W                      TCGA-RT-A6Y9 
"DEL PEAK 16(12Q21.32) WILD-TYPE" "DEL PEAK 16(12Q21.32) WILD-TYPE" 
                     TCGA-RT-A6YA                      TCGA-RW-A67V 
"DEL PEAK 16(12Q21.32) WILD-TYPE" "DEL PEAK 16(12Q21.32) WILD-TYPE" 
                     TCGA-RW-A67W                      TCGA-RW-A67X 
"DEL PEAK 16(12Q21.32) WILD-TYPE" "DEL PEAK 16(12Q21.32) WILD-TYPE" 
                     TCGA-RW-A67Y                      TCGA-RW-A680 
"DEL PEAK 16(12Q21.32) WILD-TYPE" "DEL PEAK 16(12Q21.32) WILD-TYPE" 
                     TCGA-RW-A681                      TCGA-RW-A685 
"DEL PEAK 16(12Q21.32) WILD-TYPE" "DEL PEAK 16(12Q21.32) WILD-TYPE" 
                     TCGA-RW-A686                      TCGA-RW-A688 
"DEL PEAK 16(12Q21.32) WILD-TYPE" "DEL PEAK 16(12Q21.32) WILD-TYPE" 
                     TCGA-RW-A689                      TCGA-RW-A68A 
"DEL PEAK 16(12Q21.32) WILD-TYPE" "DEL PEAK 16(12Q21.32) WILD-TYPE" 
                     TCGA-RW-A68B                      TCGA-RW-A68C 
"DEL PEAK 16(12Q21.32) WILD-TYPE" "DEL PEAK 16(12Q21.32) WILD-TYPE" 
                     TCGA-RW-A68D                      TCGA-RW-A68F 
"DEL PEAK 16(12Q21.32) WILD-TYPE" "DEL PEAK 16(12Q21.32) WILD-TYPE" 
                     TCGA-RW-A68G                      TCGA-RW-A7CZ 
"DEL PEAK 16(12Q21.32) WILD-TYPE" "DEL PEAK 16(12Q21.32) WILD-TYPE" 
                     TCGA-RW-A7D0                      TCGA-RW-A8AZ 
"DEL PEAK 16(12Q21.32) WILD-TYPE" "DEL PEAK 16(12Q21.32) WILD-TYPE" 
                     TCGA-RX-A8JQ                      TCGA-S7-A7WL 
"DEL PEAK 16(12Q21.32) WILD-TYPE" "DEL PEAK 16(12Q21.32) WILD-TYPE" 
                     TCGA-S7-A7WM                      TCGA-S7-A7WN 
"DEL PEAK 16(12Q21.32) WILD-TYPE" "DEL PEAK 16(12Q21.32) WILD-TYPE" 
                     TCGA-S7-A7WO                      TCGA-S7-A7WP 
"DEL PEAK 16(12Q21.32) WILD-TYPE" "DEL PEAK 16(12Q21.32) WILD-TYPE" 
                     TCGA-S7-A7WT                      TCGA-S7-A7WU 
"DEL PEAK 16(12Q21.32) WILD-TYPE" "DEL PEAK 16(12Q21.32) WILD-TYPE" 
                     TCGA-S7-A7WV                      TCGA-S7-A7WW 
"DEL PEAK 16(12Q21.32) WILD-TYPE" "DEL PEAK 16(12Q21.32) WILD-TYPE" 
                     TCGA-S7-A7WX                      TCGA-S7-A7X0 
"DEL PEAK 16(12Q21.32) WILD-TYPE" "DEL PEAK 16(12Q21.32) WILD-TYPE" 
                     TCGA-SA-A6C2                      TCGA-SP-A6QC 
"DEL PEAK 16(12Q21.32) WILD-TYPE" "DEL PEAK 16(12Q21.32) WILD-TYPE" 
                     TCGA-SP-A6QD                      TCGA-SP-A6QF 
"DEL PEAK 16(12Q21.32) WILD-TYPE" "DEL PEAK 16(12Q21.32) WILD-TYPE" 
                     TCGA-SP-A6QG                      TCGA-SP-A6QK 
"DEL PEAK 16(12Q21.32) WILD-TYPE" "DEL PEAK 16(12Q21.32) WILD-TYPE" 
                     TCGA-SQ-A6I4                      TCGA-SQ-A6I6 
"DEL PEAK 16(12Q21.32) WILD-TYPE" "DEL PEAK 16(12Q21.32) WILD-TYPE" 
                     TCGA-SR-A6MP                      TCGA-SR-A6MT 
"DEL PEAK 16(12Q21.32) WILD-TYPE" "DEL PEAK 16(12Q21.32) WILD-TYPE" 
                     TCGA-SR-A6MU                      TCGA-SR-A6MV 
"DEL PEAK 16(12Q21.32) WILD-TYPE" "DEL PEAK 16(12Q21.32) WILD-TYPE" 
                     TCGA-SR-A6MX                      TCGA-SR-A6N0 
"DEL PEAK 16(12Q21.32) WILD-TYPE" "DEL PEAK 16(12Q21.32) WILD-TYPE" 
                     TCGA-TT-A6YJ                      TCGA-TT-A6YK 
"DEL PEAK 16(12Q21.32) WILD-TYPE" "DEL PEAK 16(12Q21.32) WILD-TYPE" 
                     TCGA-TT-A6YN                      TCGA-TT-A6YO 
"DEL PEAK 16(12Q21.32) WILD-TYPE" "DEL PEAK 16(12Q21.32) WILD-TYPE" 
                     TCGA-W2-A7HA                      TCGA-W2-A7HB 
"DEL PEAK 16(12Q21.32) WILD-TYPE" "DEL PEAK 16(12Q21.32) WILD-TYPE" 
                     TCGA-W2-A7HC                      TCGA-W2-A7HD 
"DEL PEAK 16(12Q21.32) WILD-TYPE" "DEL PEAK 16(12Q21.32) WILD-TYPE" 
                     TCGA-W2-A7HE                      TCGA-WB-A80K 
"DEL PEAK 16(12Q21.32) WILD-TYPE" "DEL PEAK 16(12Q21.32) WILD-TYPE" 
                     TCGA-WB-A80L                      TCGA-WB-A80M 
"DEL PEAK 16(12Q21.32) WILD-TYPE" "DEL PEAK 16(12Q21.32) WILD-TYPE" 
                     TCGA-WB-A80N                      TCGA-WB-A80O 
"DEL PEAK 16(12Q21.32) WILD-TYPE" "DEL PEAK 16(12Q21.32) WILD-TYPE" 
                     TCGA-WB-A80Y                      TCGA-WB-A814 
"DEL PEAK 16(12Q21.32) WILD-TYPE" "DEL PEAK 16(12Q21.32) WILD-TYPE" 
                     TCGA-WB-A815                      TCGA-WB-A816 
"DEL PEAK 16(12Q21.32) WILD-TYPE" "DEL PEAK 16(12Q21.32) WILD-TYPE" 
                     TCGA-WB-A817                      TCGA-WB-A81D 
"DEL PEAK 16(12Q21.32) WILD-TYPE" "DEL PEAK 16(12Q21.32) WILD-TYPE" 
                     TCGA-WB-A81E                      TCGA-WB-A81F 
"DEL PEAK 16(12Q21.32) WILD-TYPE" "DEL PEAK 16(12Q21.32) WILD-TYPE" 
                     TCGA-WB-A81G                      TCGA-WB-A81H 
"DEL PEAK 16(12Q21.32) WILD-TYPE" "DEL PEAK 16(12Q21.32) WILD-TYPE" 
                     TCGA-WB-A81M                      TCGA-WB-A81N 
"DEL PEAK 16(12Q21.32) WILD-TYPE" "DEL PEAK 16(12Q21.32) WILD-TYPE" 
                     TCGA-WB-A81P                      TCGA-WB-A81Q 
"DEL PEAK 16(12Q21.32) WILD-TYPE" "DEL PEAK 16(12Q21.32) WILD-TYPE" 
                     TCGA-WB-A81R                      TCGA-WB-A81W 
"DEL PEAK 16(12Q21.32) WILD-TYPE" "DEL PEAK 16(12Q21.32) WILD-TYPE" 
                     TCGA-WB-A820                      TCGA-WB-A821 
"DEL PEAK 16(12Q21.32) WILD-TYPE" "DEL PEAK 16(12Q21.32) WILD-TYPE" 
                     TCGA-WB-A822                      TCGA-XG-A823 
"DEL PEAK 16(12Q21.32) WILD-TYPE" "DEL PEAK 16(12Q21.32) WILD-TYPE" 
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 16(12Q21.32) MUTATED        0      1      0      0
  DEL PEAK 16(12Q21.32) WILD-TYPE     20     40     18     52
D21V4, multiclass
[1] "Remove cluster labels:"        "DEL PEAK 16(12Q21.32) MUTATED"
clus
  DEL PEAK 16(12Q21.32) MUTATED DEL PEAK 16(12Q21.32) WILD-TYPE 
                              1                             130 
                     TCGA-P7-A5NY                      TCGA-P8-A5KC 
"DEL PEAK 16(12Q21.32) WILD-TYPE" "DEL PEAK 16(12Q21.32) WILD-TYPE" 
                     TCGA-P8-A5KD                      TCGA-P8-A6RX 
"DEL PEAK 16(12Q21.32) WILD-TYPE" "DEL PEAK 16(12Q21.32) WILD-TYPE" 
                     TCGA-P8-A6RY                      TCGA-PR-A5PG 
"DEL PEAK 16(12Q21.32) WILD-TYPE" "DEL PEAK 16(12Q21.32) WILD-TYPE" 
                     TCGA-PR-A5PH                      TCGA-QR-A6GO 
"DEL PEAK 16(12Q21.32) WILD-TYPE" "DEL PEAK 16(12Q21.32) WILD-TYPE" 
                     TCGA-QR-A6GR                      TCGA-QR-A6GS 
"DEL PEAK 16(12Q21.32) WILD-TYPE" "DEL PEAK 16(12Q21.32) WILD-TYPE" 
                     TCGA-QR-A6GT                      TCGA-QR-A6GU 
"DEL PEAK 16(12Q21.32) WILD-TYPE" "DEL PEAK 16(12Q21.32) WILD-TYPE" 
                     TCGA-QR-A6GX                      TCGA-QR-A6GY 
"DEL PEAK 16(12Q21.32) WILD-TYPE" "DEL PEAK 16(12Q21.32) WILD-TYPE" 
                     TCGA-QR-A6GZ                      TCGA-QR-A6H0 
"DEL PEAK 16(12Q21.32) WILD-TYPE" "DEL PEAK 16(12Q21.32) WILD-TYPE" 
                     TCGA-QR-A6H1                      TCGA-QR-A6H2 
"DEL PEAK 16(12Q21.32) WILD-TYPE" "DEL PEAK 16(12Q21.32) WILD-TYPE" 
                     TCGA-QR-A6H3                      TCGA-QR-A6H5 
"DEL PEAK 16(12Q21.32) WILD-TYPE" "DEL PEAK 16(12Q21.32) WILD-TYPE" 
                     TCGA-QR-A6H6                      TCGA-QR-A700 
"DEL PEAK 16(12Q21.32) WILD-TYPE" "DEL PEAK 16(12Q21.32) WILD-TYPE" 
                     TCGA-QR-A702                      TCGA-QR-A70C 
"DEL PEAK 16(12Q21.32) WILD-TYPE" "DEL PEAK 16(12Q21.32) WILD-TYPE" 
                     TCGA-QR-A70D                      TCGA-QR-A70E 
"DEL PEAK 16(12Q21.32) WILD-TYPE" "DEL PEAK 16(12Q21.32) WILD-TYPE" 
                     TCGA-QR-A70G                      TCGA-QR-A70H 
"DEL PEAK 16(12Q21.32) WILD-TYPE" "DEL PEAK 16(12Q21.32) WILD-TYPE" 
                     TCGA-QR-A70I                      TCGA-QR-A70J 
"DEL PEAK 16(12Q21.32) WILD-TYPE" "DEL PEAK 16(12Q21.32) WILD-TYPE" 
                     TCGA-QR-A70K                      TCGA-QR-A70N 
"DEL PEAK 16(12Q21.32) WILD-TYPE" "DEL PEAK 16(12Q21.32) WILD-TYPE" 
                     TCGA-QR-A70P                      TCGA-QR-A70R 
"DEL PEAK 16(12Q21.32) WILD-TYPE" "DEL PEAK 16(12Q21.32) WILD-TYPE" 
                     TCGA-QR-A70W                      TCGA-QR-A70X 
"DEL PEAK 16(12Q21.32) WILD-TYPE" "DEL PEAK 16(12Q21.32) WILD-TYPE" 
                     TCGA-QR-A7IN                      TCGA-QR-A7IP 
"DEL PEAK 16(12Q21.32) WILD-TYPE" "DEL PEAK 16(12Q21.32) WILD-TYPE" 
                     TCGA-QT-A5XJ                      TCGA-QT-A5XK 
"DEL PEAK 16(12Q21.32) WILD-TYPE" "DEL PEAK 16(12Q21.32) WILD-TYPE" 
                     TCGA-QT-A5XL                      TCGA-QT-A5XM 
"DEL PEAK 16(12Q21.32) WILD-TYPE" "DEL PEAK 16(12Q21.32) WILD-TYPE" 
                     TCGA-QT-A5XN                      TCGA-QT-A5XO 
"DEL PEAK 16(12Q21.32) WILD-TYPE" "DEL PEAK 16(12Q21.32) WILD-TYPE" 
                     TCGA-QT-A5XP                      TCGA-QT-A69Q 
"DEL PEAK 16(12Q21.32) WILD-TYPE" "DEL PEAK 16(12Q21.32) WILD-TYPE" 
                     TCGA-QT-A7U0                      TCGA-RM-A68T 
"DEL PEAK 16(12Q21.32) WILD-TYPE" "DEL PEAK 16(12Q21.32) WILD-TYPE" 
                     TCGA-RM-A68W                      TCGA-RT-A6Y9 
"DEL PEAK 16(12Q21.32) WILD-TYPE" "DEL PEAK 16(12Q21.32) WILD-TYPE" 
                     TCGA-RT-A6YA                      TCGA-RW-A67V 
"DEL PEAK 16(12Q21.32) WILD-TYPE" "DEL PEAK 16(12Q21.32) WILD-TYPE" 
                     TCGA-RW-A67W                      TCGA-RW-A67X 
"DEL PEAK 16(12Q21.32) WILD-TYPE" "DEL PEAK 16(12Q21.32) WILD-TYPE" 
                     TCGA-RW-A67Y                      TCGA-RW-A680 
"DEL PEAK 16(12Q21.32) WILD-TYPE" "DEL PEAK 16(12Q21.32) WILD-TYPE" 
                     TCGA-RW-A681                      TCGA-RW-A685 
"DEL PEAK 16(12Q21.32) WILD-TYPE" "DEL PEAK 16(12Q21.32) WILD-TYPE" 
                     TCGA-RW-A686                      TCGA-RW-A688 
"DEL PEAK 16(12Q21.32) WILD-TYPE" "DEL PEAK 16(12Q21.32) WILD-TYPE" 
                     TCGA-RW-A689                      TCGA-RW-A68A 
"DEL PEAK 16(12Q21.32) WILD-TYPE" "DEL PEAK 16(12Q21.32) WILD-TYPE" 
                     TCGA-RW-A68B                      TCGA-RW-A68C 
"DEL PEAK 16(12Q21.32) WILD-TYPE" "DEL PEAK 16(12Q21.32) WILD-TYPE" 
                     TCGA-RW-A68D                      TCGA-RW-A68F 
"DEL PEAK 16(12Q21.32) WILD-TYPE" "DEL PEAK 16(12Q21.32) WILD-TYPE" 
                     TCGA-RW-A68G                      TCGA-RW-A7CZ 
"DEL PEAK 16(12Q21.32) WILD-TYPE" "DEL PEAK 16(12Q21.32) WILD-TYPE" 
                     TCGA-RW-A7D0                      TCGA-RW-A8AZ 
"DEL PEAK 16(12Q21.32) WILD-TYPE" "DEL PEAK 16(12Q21.32) WILD-TYPE" 
                     TCGA-RX-A8JQ                      TCGA-S7-A7WL 
"DEL PEAK 16(12Q21.32) WILD-TYPE" "DEL PEAK 16(12Q21.32) WILD-TYPE" 
                     TCGA-S7-A7WM                      TCGA-S7-A7WN 
"DEL PEAK 16(12Q21.32) WILD-TYPE" "DEL PEAK 16(12Q21.32) WILD-TYPE" 
                     TCGA-S7-A7WO                      TCGA-S7-A7WP 
"DEL PEAK 16(12Q21.32) WILD-TYPE" "DEL PEAK 16(12Q21.32) WILD-TYPE" 
                     TCGA-S7-A7WT                      TCGA-S7-A7WU 
"DEL PEAK 16(12Q21.32) WILD-TYPE" "DEL PEAK 16(12Q21.32) WILD-TYPE" 
                     TCGA-S7-A7WV                      TCGA-S7-A7WW 
"DEL PEAK 16(12Q21.32) WILD-TYPE" "DEL PEAK 16(12Q21.32) WILD-TYPE" 
                     TCGA-S7-A7WX                      TCGA-S7-A7X0 
"DEL PEAK 16(12Q21.32) WILD-TYPE" "DEL PEAK 16(12Q21.32) WILD-TYPE" 
                     TCGA-SA-A6C2                      TCGA-SP-A6QC 
"DEL PEAK 16(12Q21.32) WILD-TYPE" "DEL PEAK 16(12Q21.32) WILD-TYPE" 
                     TCGA-SP-A6QD                      TCGA-SP-A6QF 
"DEL PEAK 16(12Q21.32) WILD-TYPE" "DEL PEAK 16(12Q21.32) WILD-TYPE" 
                     TCGA-SP-A6QG                      TCGA-SP-A6QK 
"DEL PEAK 16(12Q21.32) WILD-TYPE" "DEL PEAK 16(12Q21.32) WILD-TYPE" 
                     TCGA-SQ-A6I4                      TCGA-SQ-A6I6 
"DEL PEAK 16(12Q21.32) WILD-TYPE" "DEL PEAK 16(12Q21.32) WILD-TYPE" 
                     TCGA-SR-A6MP                      TCGA-SR-A6MT 
"DEL PEAK 16(12Q21.32) WILD-TYPE" "DEL PEAK 16(12Q21.32) WILD-TYPE" 
                     TCGA-SR-A6MU                      TCGA-SR-A6MV 
"DEL PEAK 16(12Q21.32) WILD-TYPE" "DEL PEAK 16(12Q21.32) WILD-TYPE" 
                     TCGA-SR-A6MX                      TCGA-SR-A6N0 
"DEL PEAK 16(12Q21.32) WILD-TYPE" "DEL PEAK 16(12Q21.32) WILD-TYPE" 
                     TCGA-TT-A6YJ                      TCGA-TT-A6YK 
"DEL PEAK 16(12Q21.32) WILD-TYPE" "DEL PEAK 16(12Q21.32) WILD-TYPE" 
                     TCGA-TT-A6YN                      TCGA-TT-A6YO 
"DEL PEAK 16(12Q21.32) WILD-TYPE" "DEL PEAK 16(12Q21.32) WILD-TYPE" 
                     TCGA-W2-A7HA                      TCGA-W2-A7HB 
"DEL PEAK 16(12Q21.32) WILD-TYPE" "DEL PEAK 16(12Q21.32) WILD-TYPE" 
                     TCGA-W2-A7HC                      TCGA-W2-A7HD 
"DEL PEAK 16(12Q21.32) WILD-TYPE" "DEL PEAK 16(12Q21.32) WILD-TYPE" 
                     TCGA-W2-A7HE                      TCGA-WB-A80K 
"DEL PEAK 16(12Q21.32) WILD-TYPE" "DEL PEAK 16(12Q21.32) WILD-TYPE" 
                     TCGA-WB-A80L                      TCGA-WB-A80M 
"DEL PEAK 16(12Q21.32) WILD-TYPE" "DEL PEAK 16(12Q21.32) WILD-TYPE" 
                     TCGA-WB-A80N                      TCGA-WB-A80O 
"DEL PEAK 16(12Q21.32) WILD-TYPE" "DEL PEAK 16(12Q21.32) WILD-TYPE" 
                     TCGA-WB-A80Y                      TCGA-WB-A814 
"DEL PEAK 16(12Q21.32) WILD-TYPE" "DEL PEAK 16(12Q21.32) WILD-TYPE" 
                     TCGA-WB-A815                      TCGA-WB-A816 
"DEL PEAK 16(12Q21.32) WILD-TYPE" "DEL PEAK 16(12Q21.32) WILD-TYPE" 
                     TCGA-WB-A817                      TCGA-WB-A81D 
"DEL PEAK 16(12Q21.32) WILD-TYPE" "DEL PEAK 16(12Q21.32) WILD-TYPE" 
                     TCGA-WB-A81E                      TCGA-WB-A81F 
"DEL PEAK 16(12Q21.32) WILD-TYPE" "DEL PEAK 16(12Q21.32) WILD-TYPE" 
                     TCGA-WB-A81G                      TCGA-WB-A81H 
"DEL PEAK 16(12Q21.32) WILD-TYPE" "DEL PEAK 16(12Q21.32) WILD-TYPE" 
                     TCGA-WB-A81M                      TCGA-WB-A81N 
"DEL PEAK 16(12Q21.32) WILD-TYPE" "DEL PEAK 16(12Q21.32) WILD-TYPE" 
                     TCGA-WB-A81P                      TCGA-WB-A81Q 
"DEL PEAK 16(12Q21.32) WILD-TYPE" "DEL PEAK 16(12Q21.32) WILD-TYPE" 
                     TCGA-WB-A81R                      TCGA-WB-A81W 
"DEL PEAK 16(12Q21.32) WILD-TYPE" "DEL PEAK 16(12Q21.32) WILD-TYPE" 
                     TCGA-WB-A820                      TCGA-WB-A821 
"DEL PEAK 16(12Q21.32) WILD-TYPE" "DEL PEAK 16(12Q21.32) WILD-TYPE" 
                     TCGA-WB-A822                      TCGA-XG-A823 
"DEL PEAK 16(12Q21.32) WILD-TYPE" "DEL PEAK 16(12Q21.32) WILD-TYPE" 
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(12Q21.32) MUTATED        0      1      0
  DEL PEAK 16(12Q21.32) WILD-TYPE     34     54     42
D21V5, multiclass
[1] "Remove cluster labels:"        "DEL PEAK 16(12Q21.32) MUTATED"
clus
  DEL PEAK 16(12Q21.32) MUTATED DEL PEAK 16(12Q21.32) WILD-TYPE 
                              1                             130 
                     TCGA-P7-A5NY                      TCGA-P8-A5KC 
"DEL PEAK 16(12Q21.32) WILD-TYPE" "DEL PEAK 16(12Q21.32) WILD-TYPE" 
                     TCGA-P8-A5KD                      TCGA-P8-A6RX 
"DEL PEAK 16(12Q21.32) WILD-TYPE" "DEL PEAK 16(12Q21.32) WILD-TYPE" 
                     TCGA-P8-A6RY                      TCGA-PR-A5PG 
"DEL PEAK 16(12Q21.32) WILD-TYPE" "DEL PEAK 16(12Q21.32) WILD-TYPE" 
                     TCGA-PR-A5PH                      TCGA-QR-A6GO 
"DEL PEAK 16(12Q21.32) WILD-TYPE" "DEL PEAK 16(12Q21.32) WILD-TYPE" 
                     TCGA-QR-A6GR                      TCGA-QR-A6GS 
"DEL PEAK 16(12Q21.32) WILD-TYPE" "DEL PEAK 16(12Q21.32) WILD-TYPE" 
                     TCGA-QR-A6GT                      TCGA-QR-A6GU 
"DEL PEAK 16(12Q21.32) WILD-TYPE" "DEL PEAK 16(12Q21.32) WILD-TYPE" 
                     TCGA-QR-A6GX                      TCGA-QR-A6GY 
"DEL PEAK 16(12Q21.32) WILD-TYPE" "DEL PEAK 16(12Q21.32) WILD-TYPE" 
                     TCGA-QR-A6GZ                      TCGA-QR-A6H0 
"DEL PEAK 16(12Q21.32) WILD-TYPE" "DEL PEAK 16(12Q21.32) WILD-TYPE" 
                     TCGA-QR-A6H1                      TCGA-QR-A6H2 
"DEL PEAK 16(12Q21.32) WILD-TYPE" "DEL PEAK 16(12Q21.32) WILD-TYPE" 
                     TCGA-QR-A6H3                      TCGA-QR-A6H5 
"DEL PEAK 16(12Q21.32) WILD-TYPE" "DEL PEAK 16(12Q21.32) WILD-TYPE" 
                     TCGA-QR-A6H6                      TCGA-QR-A700 
"DEL PEAK 16(12Q21.32) WILD-TYPE" "DEL PEAK 16(12Q21.32) WILD-TYPE" 
                     TCGA-QR-A702                      TCGA-QR-A70C 
"DEL PEAK 16(12Q21.32) WILD-TYPE" "DEL PEAK 16(12Q21.32) WILD-TYPE" 
                     TCGA-QR-A70D                      TCGA-QR-A70E 
"DEL PEAK 16(12Q21.32) WILD-TYPE" "DEL PEAK 16(12Q21.32) WILD-TYPE" 
                     TCGA-QR-A70G                      TCGA-QR-A70H 
"DEL PEAK 16(12Q21.32) WILD-TYPE" "DEL PEAK 16(12Q21.32) WILD-TYPE" 
                     TCGA-QR-A70I                      TCGA-QR-A70J 
"DEL PEAK 16(12Q21.32) WILD-TYPE" "DEL PEAK 16(12Q21.32) WILD-TYPE" 
                     TCGA-QR-A70K                      TCGA-QR-A70N 
"DEL PEAK 16(12Q21.32) WILD-TYPE" "DEL PEAK 16(12Q21.32) WILD-TYPE" 
                     TCGA-QR-A70P                      TCGA-QR-A70R 
"DEL PEAK 16(12Q21.32) WILD-TYPE" "DEL PEAK 16(12Q21.32) WILD-TYPE" 
                     TCGA-QR-A70W                      TCGA-QR-A70X 
"DEL PEAK 16(12Q21.32) WILD-TYPE" "DEL PEAK 16(12Q21.32) WILD-TYPE" 
                     TCGA-QR-A7IN                      TCGA-QR-A7IP 
"DEL PEAK 16(12Q21.32) WILD-TYPE" "DEL PEAK 16(12Q21.32) WILD-TYPE" 
                     TCGA-QT-A5XJ                      TCGA-QT-A5XK 
"DEL PEAK 16(12Q21.32) WILD-TYPE" "DEL PEAK 16(12Q21.32) WILD-TYPE" 
                     TCGA-QT-A5XL                      TCGA-QT-A5XM 
"DEL PEAK 16(12Q21.32) WILD-TYPE" "DEL PEAK 16(12Q21.32) WILD-TYPE" 
                     TCGA-QT-A5XN                      TCGA-QT-A5XO 
"DEL PEAK 16(12Q21.32) WILD-TYPE" "DEL PEAK 16(12Q21.32) WILD-TYPE" 
                     TCGA-QT-A5XP                      TCGA-QT-A69Q 
"DEL PEAK 16(12Q21.32) WILD-TYPE" "DEL PEAK 16(12Q21.32) WILD-TYPE" 
                     TCGA-QT-A7U0                      TCGA-RM-A68T 
"DEL PEAK 16(12Q21.32) WILD-TYPE" "DEL PEAK 16(12Q21.32) WILD-TYPE" 
                     TCGA-RM-A68W                      TCGA-RT-A6Y9 
"DEL PEAK 16(12Q21.32) WILD-TYPE" "DEL PEAK 16(12Q21.32) WILD-TYPE" 
                     TCGA-RT-A6YA                      TCGA-RW-A67V 
"DEL PEAK 16(12Q21.32) WILD-TYPE" "DEL PEAK 16(12Q21.32) WILD-TYPE" 
                     TCGA-RW-A67W                      TCGA-RW-A67X 
"DEL PEAK 16(12Q21.32) WILD-TYPE" "DEL PEAK 16(12Q21.32) WILD-TYPE" 
                     TCGA-RW-A67Y                      TCGA-RW-A680 
"DEL PEAK 16(12Q21.32) WILD-TYPE" "DEL PEAK 16(12Q21.32) WILD-TYPE" 
                     TCGA-RW-A681                      TCGA-RW-A685 
"DEL PEAK 16(12Q21.32) WILD-TYPE" "DEL PEAK 16(12Q21.32) WILD-TYPE" 
                     TCGA-RW-A686                      TCGA-RW-A688 
"DEL PEAK 16(12Q21.32) WILD-TYPE" "DEL PEAK 16(12Q21.32) WILD-TYPE" 
                     TCGA-RW-A689                      TCGA-RW-A68A 
"DEL PEAK 16(12Q21.32) WILD-TYPE" "DEL PEAK 16(12Q21.32) WILD-TYPE" 
                     TCGA-RW-A68B                      TCGA-RW-A68C 
"DEL PEAK 16(12Q21.32) WILD-TYPE" "DEL PEAK 16(12Q21.32) WILD-TYPE" 
                     TCGA-RW-A68D                      TCGA-RW-A68F 
"DEL PEAK 16(12Q21.32) WILD-TYPE" "DEL PEAK 16(12Q21.32) WILD-TYPE" 
                     TCGA-RW-A68G                      TCGA-RW-A7CZ 
"DEL PEAK 16(12Q21.32) WILD-TYPE" "DEL PEAK 16(12Q21.32) WILD-TYPE" 
                     TCGA-RW-A7D0                      TCGA-RW-A8AZ 
"DEL PEAK 16(12Q21.32) WILD-TYPE" "DEL PEAK 16(12Q21.32) WILD-TYPE" 
                     TCGA-RX-A8JQ                      TCGA-S7-A7WL 
"DEL PEAK 16(12Q21.32) WILD-TYPE" "DEL PEAK 16(12Q21.32) WILD-TYPE" 
                     TCGA-S7-A7WM                      TCGA-S7-A7WN 
"DEL PEAK 16(12Q21.32) WILD-TYPE" "DEL PEAK 16(12Q21.32) WILD-TYPE" 
                     TCGA-S7-A7WO                      TCGA-S7-A7WP 
"DEL PEAK 16(12Q21.32) WILD-TYPE" "DEL PEAK 16(12Q21.32) WILD-TYPE" 
                     TCGA-S7-A7WT                      TCGA-S7-A7WU 
"DEL PEAK 16(12Q21.32) WILD-TYPE" "DEL PEAK 16(12Q21.32) WILD-TYPE" 
                     TCGA-S7-A7WV                      TCGA-S7-A7WW 
"DEL PEAK 16(12Q21.32) WILD-TYPE" "DEL PEAK 16(12Q21.32) WILD-TYPE" 
                     TCGA-S7-A7WX                      TCGA-S7-A7X0 
"DEL PEAK 16(12Q21.32) WILD-TYPE" "DEL PEAK 16(12Q21.32) WILD-TYPE" 
                     TCGA-SA-A6C2                      TCGA-SP-A6QC 
"DEL PEAK 16(12Q21.32) WILD-TYPE" "DEL PEAK 16(12Q21.32) WILD-TYPE" 
                     TCGA-SP-A6QD                      TCGA-SP-A6QF 
"DEL PEAK 16(12Q21.32) WILD-TYPE" "DEL PEAK 16(12Q21.32) WILD-TYPE" 
                     TCGA-SP-A6QG                      TCGA-SP-A6QK 
"DEL PEAK 16(12Q21.32) WILD-TYPE" "DEL PEAK 16(12Q21.32) WILD-TYPE" 
                     TCGA-SQ-A6I4                      TCGA-SQ-A6I6 
"DEL PEAK 16(12Q21.32) WILD-TYPE" "DEL PEAK 16(12Q21.32) WILD-TYPE" 
                     TCGA-SR-A6MP                      TCGA-SR-A6MT 
"DEL PEAK 16(12Q21.32) WILD-TYPE" "DEL PEAK 16(12Q21.32) WILD-TYPE" 
                     TCGA-SR-A6MU                      TCGA-SR-A6MV 
"DEL PEAK 16(12Q21.32) WILD-TYPE" "DEL PEAK 16(12Q21.32) WILD-TYPE" 
                     TCGA-SR-A6MX                      TCGA-SR-A6N0 
"DEL PEAK 16(12Q21.32) WILD-TYPE" "DEL PEAK 16(12Q21.32) WILD-TYPE" 
                     TCGA-TT-A6YJ                      TCGA-TT-A6YK 
"DEL PEAK 16(12Q21.32) WILD-TYPE" "DEL PEAK 16(12Q21.32) WILD-TYPE" 
                     TCGA-TT-A6YN                      TCGA-TT-A6YO 
"DEL PEAK 16(12Q21.32) WILD-TYPE" "DEL PEAK 16(12Q21.32) WILD-TYPE" 
                     TCGA-W2-A7HA                      TCGA-W2-A7HB 
"DEL PEAK 16(12Q21.32) WILD-TYPE" "DEL PEAK 16(12Q21.32) WILD-TYPE" 
                     TCGA-W2-A7HC                      TCGA-W2-A7HD 
"DEL PEAK 16(12Q21.32) WILD-TYPE" "DEL PEAK 16(12Q21.32) WILD-TYPE" 
                     TCGA-W2-A7HE                      TCGA-WB-A80K 
"DEL PEAK 16(12Q21.32) WILD-TYPE" "DEL PEAK 16(12Q21.32) WILD-TYPE" 
                     TCGA-WB-A80L                      TCGA-WB-A80M 
"DEL PEAK 16(12Q21.32) WILD-TYPE" "DEL PEAK 16(12Q21.32) WILD-TYPE" 
                     TCGA-WB-A80N                      TCGA-WB-A80O 
"DEL PEAK 16(12Q21.32) WILD-TYPE" "DEL PEAK 16(12Q21.32) WILD-TYPE" 
                     TCGA-WB-A80Y                      TCGA-WB-A814 
"DEL PEAK 16(12Q21.32) WILD-TYPE" "DEL PEAK 16(12Q21.32) WILD-TYPE" 
                     TCGA-WB-A815                      TCGA-WB-A816 
"DEL PEAK 16(12Q21.32) WILD-TYPE" "DEL PEAK 16(12Q21.32) WILD-TYPE" 
                     TCGA-WB-A817                      TCGA-WB-A81D 
"DEL PEAK 16(12Q21.32) WILD-TYPE" "DEL PEAK 16(12Q21.32) WILD-TYPE" 
                     TCGA-WB-A81E                      TCGA-WB-A81F 
"DEL PEAK 16(12Q21.32) WILD-TYPE" "DEL PEAK 16(12Q21.32) WILD-TYPE" 
                     TCGA-WB-A81G                      TCGA-WB-A81H 
"DEL PEAK 16(12Q21.32) WILD-TYPE" "DEL PEAK 16(12Q21.32) WILD-TYPE" 
                     TCGA-WB-A81M                      TCGA-WB-A81N 
"DEL PEAK 16(12Q21.32) WILD-TYPE" "DEL PEAK 16(12Q21.32) WILD-TYPE" 
                     TCGA-WB-A81P                      TCGA-WB-A81Q 
"DEL PEAK 16(12Q21.32) WILD-TYPE" "DEL PEAK 16(12Q21.32) WILD-TYPE" 
                     TCGA-WB-A81R                      TCGA-WB-A81W 
"DEL PEAK 16(12Q21.32) WILD-TYPE" "DEL PEAK 16(12Q21.32) WILD-TYPE" 
                     TCGA-WB-A820                      TCGA-WB-A821 
"DEL PEAK 16(12Q21.32) WILD-TYPE" "DEL PEAK 16(12Q21.32) WILD-TYPE" 
                     TCGA-WB-A822                      TCGA-XG-A823 
"DEL PEAK 16(12Q21.32) WILD-TYPE" "DEL PEAK 16(12Q21.32) WILD-TYPE" 
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(12Q21.32) MUTATED        0      1      0
  DEL PEAK 16(12Q21.32) WILD-TYPE     32     42     56
D21V6, multiclass
[1] "Remove cluster labels:"        "DEL PEAK 16(12Q21.32) MUTATED"
clus
  DEL PEAK 16(12Q21.32) MUTATED DEL PEAK 16(12Q21.32) WILD-TYPE 
                              1                             130 
                     TCGA-P7-A5NY                      TCGA-P8-A5KC 
"DEL PEAK 16(12Q21.32) WILD-TYPE" "DEL PEAK 16(12Q21.32) WILD-TYPE" 
                     TCGA-P8-A5KD                      TCGA-P8-A6RX 
"DEL PEAK 16(12Q21.32) WILD-TYPE" "DEL PEAK 16(12Q21.32) WILD-TYPE" 
                     TCGA-P8-A6RY                      TCGA-PR-A5PG 
"DEL PEAK 16(12Q21.32) WILD-TYPE" "DEL PEAK 16(12Q21.32) WILD-TYPE" 
                     TCGA-PR-A5PH                      TCGA-QR-A6GO 
"DEL PEAK 16(12Q21.32) WILD-TYPE" "DEL PEAK 16(12Q21.32) WILD-TYPE" 
                     TCGA-QR-A6GR                      TCGA-QR-A6GS 
"DEL PEAK 16(12Q21.32) WILD-TYPE" "DEL PEAK 16(12Q21.32) WILD-TYPE" 
                     TCGA-QR-A6GT                      TCGA-QR-A6GU 
"DEL PEAK 16(12Q21.32) WILD-TYPE" "DEL PEAK 16(12Q21.32) WILD-TYPE" 
                     TCGA-QR-A6GX                      TCGA-QR-A6GY 
"DEL PEAK 16(12Q21.32) WILD-TYPE" "DEL PEAK 16(12Q21.32) WILD-TYPE" 
                     TCGA-QR-A6GZ                      TCGA-QR-A6H0 
"DEL PEAK 16(12Q21.32) WILD-TYPE" "DEL PEAK 16(12Q21.32) WILD-TYPE" 
                     TCGA-QR-A6H1                      TCGA-QR-A6H2 
"DEL PEAK 16(12Q21.32) WILD-TYPE" "DEL PEAK 16(12Q21.32) WILD-TYPE" 
                     TCGA-QR-A6H3                      TCGA-QR-A6H5 
"DEL PEAK 16(12Q21.32) WILD-TYPE" "DEL PEAK 16(12Q21.32) WILD-TYPE" 
                     TCGA-QR-A6H6                      TCGA-QR-A700 
"DEL PEAK 16(12Q21.32) WILD-TYPE" "DEL PEAK 16(12Q21.32) WILD-TYPE" 
                     TCGA-QR-A702                      TCGA-QR-A70C 
"DEL PEAK 16(12Q21.32) WILD-TYPE" "DEL PEAK 16(12Q21.32) WILD-TYPE" 
                     TCGA-QR-A70D                      TCGA-QR-A70E 
"DEL PEAK 16(12Q21.32) WILD-TYPE" "DEL PEAK 16(12Q21.32) WILD-TYPE" 
                     TCGA-QR-A70G                      TCGA-QR-A70H 
"DEL PEAK 16(12Q21.32) WILD-TYPE" "DEL PEAK 16(12Q21.32) WILD-TYPE" 
                     TCGA-QR-A70I                      TCGA-QR-A70J 
"DEL PEAK 16(12Q21.32) WILD-TYPE" "DEL PEAK 16(12Q21.32) WILD-TYPE" 
                     TCGA-QR-A70K                      TCGA-QR-A70N 
"DEL PEAK 16(12Q21.32) WILD-TYPE" "DEL PEAK 16(12Q21.32) WILD-TYPE" 
                     TCGA-QR-A70P                      TCGA-QR-A70R 
"DEL PEAK 16(12Q21.32) WILD-TYPE" "DEL PEAK 16(12Q21.32) WILD-TYPE" 
                     TCGA-QR-A70W                      TCGA-QR-A70X 
"DEL PEAK 16(12Q21.32) WILD-TYPE" "DEL PEAK 16(12Q21.32) WILD-TYPE" 
                     TCGA-QR-A7IN                      TCGA-QR-A7IP 
"DEL PEAK 16(12Q21.32) WILD-TYPE" "DEL PEAK 16(12Q21.32) WILD-TYPE" 
                     TCGA-QT-A5XJ                      TCGA-QT-A5XK 
"DEL PEAK 16(12Q21.32) WILD-TYPE" "DEL PEAK 16(12Q21.32) WILD-TYPE" 
                     TCGA-QT-A5XL                      TCGA-QT-A5XM 
"DEL PEAK 16(12Q21.32) WILD-TYPE" "DEL PEAK 16(12Q21.32) WILD-TYPE" 
                     TCGA-QT-A5XN                      TCGA-QT-A5XO 
"DEL PEAK 16(12Q21.32) WILD-TYPE" "DEL PEAK 16(12Q21.32) WILD-TYPE" 
                     TCGA-QT-A5XP                      TCGA-QT-A69Q 
"DEL PEAK 16(12Q21.32) WILD-TYPE" "DEL PEAK 16(12Q21.32) WILD-TYPE" 
                     TCGA-QT-A7U0                      TCGA-RM-A68T 
"DEL PEAK 16(12Q21.32) WILD-TYPE" "DEL PEAK 16(12Q21.32) WILD-TYPE" 
                     TCGA-RM-A68W                      TCGA-RT-A6Y9 
"DEL PEAK 16(12Q21.32) WILD-TYPE" "DEL PEAK 16(12Q21.32) WILD-TYPE" 
                     TCGA-RT-A6YA                      TCGA-RW-A67V 
"DEL PEAK 16(12Q21.32) WILD-TYPE" "DEL PEAK 16(12Q21.32) WILD-TYPE" 
                     TCGA-RW-A67W                      TCGA-RW-A67X 
"DEL PEAK 16(12Q21.32) WILD-TYPE" "DEL PEAK 16(12Q21.32) WILD-TYPE" 
                     TCGA-RW-A67Y                      TCGA-RW-A680 
"DEL PEAK 16(12Q21.32) WILD-TYPE" "DEL PEAK 16(12Q21.32) WILD-TYPE" 
                     TCGA-RW-A681                      TCGA-RW-A685 
"DEL PEAK 16(12Q21.32) WILD-TYPE" "DEL PEAK 16(12Q21.32) WILD-TYPE" 
                     TCGA-RW-A686                      TCGA-RW-A688 
"DEL PEAK 16(12Q21.32) WILD-TYPE" "DEL PEAK 16(12Q21.32) WILD-TYPE" 
                     TCGA-RW-A689                      TCGA-RW-A68A 
"DEL PEAK 16(12Q21.32) WILD-TYPE" "DEL PEAK 16(12Q21.32) WILD-TYPE" 
                     TCGA-RW-A68B                      TCGA-RW-A68C 
"DEL PEAK 16(12Q21.32) WILD-TYPE" "DEL PEAK 16(12Q21.32) WILD-TYPE" 
                     TCGA-RW-A68D                      TCGA-RW-A68F 
"DEL PEAK 16(12Q21.32) WILD-TYPE" "DEL PEAK 16(12Q21.32) WILD-TYPE" 
                     TCGA-RW-A68G                      TCGA-RW-A7CZ 
"DEL PEAK 16(12Q21.32) WILD-TYPE" "DEL PEAK 16(12Q21.32) WILD-TYPE" 
                     TCGA-RW-A7D0                      TCGA-RW-A8AZ 
"DEL PEAK 16(12Q21.32) WILD-TYPE" "DEL PEAK 16(12Q21.32) WILD-TYPE" 
                     TCGA-RX-A8JQ                      TCGA-S7-A7WL 
"DEL PEAK 16(12Q21.32) WILD-TYPE" "DEL PEAK 16(12Q21.32) WILD-TYPE" 
                     TCGA-S7-A7WM                      TCGA-S7-A7WN 
"DEL PEAK 16(12Q21.32) WILD-TYPE" "DEL PEAK 16(12Q21.32) WILD-TYPE" 
                     TCGA-S7-A7WO                      TCGA-S7-A7WP 
"DEL PEAK 16(12Q21.32) WILD-TYPE" "DEL PEAK 16(12Q21.32) WILD-TYPE" 
                     TCGA-S7-A7WT                      TCGA-S7-A7WU 
"DEL PEAK 16(12Q21.32) WILD-TYPE" "DEL PEAK 16(12Q21.32) WILD-TYPE" 
                     TCGA-S7-A7WV                      TCGA-S7-A7WW 
"DEL PEAK 16(12Q21.32) WILD-TYPE" "DEL PEAK 16(12Q21.32) WILD-TYPE" 
                     TCGA-S7-A7WX                      TCGA-S7-A7X0 
"DEL PEAK 16(12Q21.32) WILD-TYPE" "DEL PEAK 16(12Q21.32) WILD-TYPE" 
                     TCGA-SA-A6C2                      TCGA-SP-A6QC 
"DEL PEAK 16(12Q21.32) WILD-TYPE" "DEL PEAK 16(12Q21.32) WILD-TYPE" 
                     TCGA-SP-A6QD                      TCGA-SP-A6QF 
"DEL PEAK 16(12Q21.32) WILD-TYPE" "DEL PEAK 16(12Q21.32) WILD-TYPE" 
                     TCGA-SP-A6QG                      TCGA-SP-A6QK 
"DEL PEAK 16(12Q21.32) WILD-TYPE" "DEL PEAK 16(12Q21.32) WILD-TYPE" 
                     TCGA-SQ-A6I4                      TCGA-SQ-A6I6 
"DEL PEAK 16(12Q21.32) WILD-TYPE" "DEL PEAK 16(12Q21.32) WILD-TYPE" 
                     TCGA-SR-A6MP                      TCGA-SR-A6MT 
"DEL PEAK 16(12Q21.32) WILD-TYPE" "DEL PEAK 16(12Q21.32) WILD-TYPE" 
                     TCGA-SR-A6MU                      TCGA-SR-A6MV 
"DEL PEAK 16(12Q21.32) WILD-TYPE" "DEL PEAK 16(12Q21.32) WILD-TYPE" 
                     TCGA-SR-A6MX                      TCGA-SR-A6N0 
"DEL PEAK 16(12Q21.32) WILD-TYPE" "DEL PEAK 16(12Q21.32) WILD-TYPE" 
                     TCGA-TT-A6YJ                      TCGA-TT-A6YK 
"DEL PEAK 16(12Q21.32) WILD-TYPE" "DEL PEAK 16(12Q21.32) WILD-TYPE" 
                     TCGA-TT-A6YN                      TCGA-TT-A6YO 
"DEL PEAK 16(12Q21.32) WILD-TYPE" "DEL PEAK 16(12Q21.32) WILD-TYPE" 
                     TCGA-W2-A7HA                      TCGA-W2-A7HB 
"DEL PEAK 16(12Q21.32) WILD-TYPE" "DEL PEAK 16(12Q21.32) WILD-TYPE" 
                     TCGA-W2-A7HC                      TCGA-W2-A7HD 
"DEL PEAK 16(12Q21.32) WILD-TYPE" "DEL PEAK 16(12Q21.32) WILD-TYPE" 
                     TCGA-W2-A7HE                      TCGA-WB-A80K 
"DEL PEAK 16(12Q21.32) WILD-TYPE" "DEL PEAK 16(12Q21.32) WILD-TYPE" 
                     TCGA-WB-A80L                      TCGA-WB-A80M 
"DEL PEAK 16(12Q21.32) WILD-TYPE" "DEL PEAK 16(12Q21.32) WILD-TYPE" 
                     TCGA-WB-A80N                      TCGA-WB-A80O 
"DEL PEAK 16(12Q21.32) WILD-TYPE" "DEL PEAK 16(12Q21.32) WILD-TYPE" 
                     TCGA-WB-A80Y                      TCGA-WB-A814 
"DEL PEAK 16(12Q21.32) WILD-TYPE" "DEL PEAK 16(12Q21.32) WILD-TYPE" 
                     TCGA-WB-A815                      TCGA-WB-A816 
"DEL PEAK 16(12Q21.32) WILD-TYPE" "DEL PEAK 16(12Q21.32) WILD-TYPE" 
                     TCGA-WB-A817                      TCGA-WB-A81D 
"DEL PEAK 16(12Q21.32) WILD-TYPE" "DEL PEAK 16(12Q21.32) WILD-TYPE" 
                     TCGA-WB-A81E                      TCGA-WB-A81F 
"DEL PEAK 16(12Q21.32) WILD-TYPE" "DEL PEAK 16(12Q21.32) WILD-TYPE" 
                     TCGA-WB-A81G                      TCGA-WB-A81H 
"DEL PEAK 16(12Q21.32) WILD-TYPE" "DEL PEAK 16(12Q21.32) WILD-TYPE" 
                     TCGA-WB-A81M                      TCGA-WB-A81N 
"DEL PEAK 16(12Q21.32) WILD-TYPE" "DEL PEAK 16(12Q21.32) WILD-TYPE" 
                     TCGA-WB-A81P                      TCGA-WB-A81Q 
"DEL PEAK 16(12Q21.32) WILD-TYPE" "DEL PEAK 16(12Q21.32) WILD-TYPE" 
                     TCGA-WB-A81R                      TCGA-WB-A81W 
"DEL PEAK 16(12Q21.32) WILD-TYPE" "DEL PEAK 16(12Q21.32) WILD-TYPE" 
                     TCGA-WB-A820                      TCGA-WB-A821 
"DEL PEAK 16(12Q21.32) WILD-TYPE" "DEL PEAK 16(12Q21.32) WILD-TYPE" 
                     TCGA-WB-A822                      TCGA-XG-A823 
"DEL PEAK 16(12Q21.32) WILD-TYPE" "DEL PEAK 16(12Q21.32) WILD-TYPE" 

Clustering(22) Variable = DEL PEAK 17(16Q21) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 17(16Q21) MUTATED        0      0      0      4      0      1
  DEL PEAK 17(16Q21) WILD-TYPE     23     24     57     42      7      1
D22V1, multiclass
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(16Q21) MUTATED        3      2      0
  DEL PEAK 17(16Q21) WILD-TYPE     37     75     42
D22V2, multiclass
        clus
vv       DEL PEAK 17(16Q21) MUTATED DEL PEAK 17(16Q21) WILD-TYPE
  CLUS_1                          3                           37
  CLUS_2                          2                           75
  CLUS_3                          0                           42
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(16Q21) MUTATED        3      1      0
  DEL PEAK 17(16Q21) WILD-TYPE     51     52     24
D22V3, multiclass
        clus
vv       DEL PEAK 17(16Q21) MUTATED DEL PEAK 17(16Q21) WILD-TYPE
  CLUS_1                          3                           51
  CLUS_2                          1                           52
  CLUS_3                          0                           24
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 17(16Q21) MUTATED        0      0      1      3
  DEL PEAK 17(16Q21) WILD-TYPE     20     41     17     49
D22V4, multiclass
        clus
vv       DEL PEAK 17(16Q21) MUTATED DEL PEAK 17(16Q21) WILD-TYPE
  CLUS_1                          0                           20
  CLUS_2                          0                           41
  CLUS_3                          1                           17
  CLUS_4                          3                           49
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(16Q21) MUTATED        2      2      0
  DEL PEAK 17(16Q21) WILD-TYPE     32     53     42
D22V5, multiclass
        clus
vv       DEL PEAK 17(16Q21) MUTATED DEL PEAK 17(16Q21) WILD-TYPE
  CLUS_1                          2                           32
  CLUS_2                          2                           53
  CLUS_3                          0                           42
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(16Q21) MUTATED        1      0      3
  DEL PEAK 17(16Q21) WILD-TYPE     31     43     53
D22V6, multiclass
        clus
vv       DEL PEAK 17(16Q21) MUTATED DEL PEAK 17(16Q21) WILD-TYPE
  CLUS_1                          1                           31
  CLUS_2                          0                           43
  CLUS_3                          3                           53

Clustering(23) Variable = DEL PEAK 18(17P13.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 18(17P13.2) MUTATED        6      7     26     23      0      2
  DEL PEAK 18(17P13.2) WILD-TYPE     17     17     31     23      7      0
D23V1, multiclass
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(17P13.2) MUTATED        9     43     12
  DEL PEAK 18(17P13.2) WILD-TYPE     31     34     30
D23V2, multiclass
        clus
vv       DEL PEAK 18(17P13.2) MUTATED DEL PEAK 18(17P13.2) WILD-TYPE
  CLUS_1                            9                             31
  CLUS_2                           43                             34
  CLUS_3                           12                             30
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(17P13.2) MUTATED       17     30      4
  DEL PEAK 18(17P13.2) WILD-TYPE     37     23     20
D23V3, multiclass
        clus
vv       DEL PEAK 18(17P13.2) MUTATED DEL PEAK 18(17P13.2) WILD-TYPE
  CLUS_1                           17                             37
  CLUS_2                           30                             23
  CLUS_3                            4                             20
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 18(17P13.2) MUTATED        4     24      8     15
  DEL PEAK 18(17P13.2) WILD-TYPE     16     17     10     37
D23V4, multiclass
        clus
vv       DEL PEAK 18(17P13.2) MUTATED DEL PEAK 18(17P13.2) WILD-TYPE
  CLUS_1                            4                             16
  CLUS_2                           24                             17
  CLUS_3                            8                             10
  CLUS_4                           15                             37
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(17P13.2) MUTATED       11     30     10
  DEL PEAK 18(17P13.2) WILD-TYPE     23     25     32
D23V5, multiclass
        clus
vv       DEL PEAK 18(17P13.2) MUTATED DEL PEAK 18(17P13.2) WILD-TYPE
  CLUS_1                           11                             23
  CLUS_2                           30                             25
  CLUS_3                           10                             32
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(17P13.2) MUTATED       12     24     15
  DEL PEAK 18(17P13.2) WILD-TYPE     20     19     41
D23V6, multiclass
        clus
vv       DEL PEAK 18(17P13.2) MUTATED DEL PEAK 18(17P13.2) WILD-TYPE
  CLUS_1                           12                             20
  CLUS_2                           24                             19
  CLUS_3                           15                             41

Clustering(24) Variable = DEL PEAK 19(17Q11.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 19(17Q11.2) MUTATED        3      4     18     16      0      1
  DEL PEAK 19(17Q11.2) WILD-TYPE     20     20     39     30      7      1
D24V1, multiclass
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(17Q11.2) MUTATED        4     29      9
  DEL PEAK 19(17Q11.2) WILD-TYPE     36     48     33
D24V2, multiclass
        clus
vv       DEL PEAK 19(17Q11.2) MUTATED DEL PEAK 19(17Q11.2) WILD-TYPE
  CLUS_1                            4                             36
  CLUS_2                           29                             48
  CLUS_3                            9                             33
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(17Q11.2) MUTATED        8     23      4
  DEL PEAK 19(17Q11.2) WILD-TYPE     46     30     20
D24V3, multiclass
        clus
vv       DEL PEAK 19(17Q11.2) MUTATED DEL PEAK 19(17Q11.2) WILD-TYPE
  CLUS_1                            8                             46
  CLUS_2                           23                             30
  CLUS_3                            4                             20
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 19(17Q11.2) MUTATED        3     20      3      9
  DEL PEAK 19(17Q11.2) WILD-TYPE     17     21     15     43
D24V4, multiclass
        clus
vv       DEL PEAK 19(17Q11.2) MUTATED DEL PEAK 19(17Q11.2) WILD-TYPE
  CLUS_1                            3                             17
  CLUS_2                           20                             21
  CLUS_3                            3                             15
  CLUS_4                            9                             43
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(17Q11.2) MUTATED        8     24      3
  DEL PEAK 19(17Q11.2) WILD-TYPE     26     31     39
D24V5, multiclass
        clus
vv       DEL PEAK 19(17Q11.2) MUTATED DEL PEAK 19(17Q11.2) WILD-TYPE
  CLUS_1                            8                             26
  CLUS_2                           24                             31
  CLUS_3                            3                             39
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(17Q11.2) MUTATED        6     20      9
  DEL PEAK 19(17Q11.2) WILD-TYPE     26     23     47
D24V6, multiclass
        clus
vv       DEL PEAK 19(17Q11.2) MUTATED DEL PEAK 19(17Q11.2) WILD-TYPE
  CLUS_1                            6                             26
  CLUS_2                           20                             23
  CLUS_3                            9                             47

Clustering(25) Variable = DEL PEAK 20(22Q12.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 20(22Q12.3) MUTATED        8      5     30     15      1      0
  DEL PEAK 20(22Q12.3) WILD-TYPE     15     19     27     31      6      2
D25V1, multiclass
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(22Q12.3) MUTATED       10     38     11
  DEL PEAK 20(22Q12.3) WILD-TYPE     30     39     31
D25V2, multiclass
        clus
vv       DEL PEAK 20(22Q12.3) MUTATED DEL PEAK 20(22Q12.3) WILD-TYPE
  CLUS_1                           10                             30
  CLUS_2                           38                             39
  CLUS_3                           11                             31
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(22Q12.3) MUTATED       12     27      8
  DEL PEAK 20(22Q12.3) WILD-TYPE     42     26     16
D25V3, multiclass
        clus
vv       DEL PEAK 20(22Q12.3) MUTATED DEL PEAK 20(22Q12.3) WILD-TYPE
  CLUS_1                           12                             42
  CLUS_2                           27                             26
  CLUS_3                            8                             16
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 20(22Q12.3) MUTATED        8     22      5     12
  DEL PEAK 20(22Q12.3) WILD-TYPE     12     19     13     40
D25V4, multiclass
        clus
vv       DEL PEAK 20(22Q12.3) MUTATED DEL PEAK 20(22Q12.3) WILD-TYPE
  CLUS_1                            8                             12
  CLUS_2                           22                             19
  CLUS_3                            5                             13
  CLUS_4                           12                             40
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(22Q12.3) MUTATED        7     28     12
  DEL PEAK 20(22Q12.3) WILD-TYPE     27     27     30
D25V5, multiclass
        clus
vv       DEL PEAK 20(22Q12.3) MUTATED DEL PEAK 20(22Q12.3) WILD-TYPE
  CLUS_1                            7                             27
  CLUS_2                           28                             27
  CLUS_3                           12                             30
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(22Q12.3) MUTATED       12     24     11
  DEL PEAK 20(22Q12.3) WILD-TYPE     20     19     45
D25V6, multiclass
        clus
vv       DEL PEAK 20(22Q12.3) MUTATED DEL PEAK 20(22Q12.3) WILD-TYPE
  CLUS_1                           12                             20
  CLUS_2                           24                             19
  CLUS_3                           11                             45

Clustering(26) Variable = DEL PEAK 21(22Q13.31) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 21(22Q13.31) MUTATED        8      6     33     15      2      0
  DEL PEAK 21(22Q13.31) WILD-TYPE     15     18     24     31      5      2
D26V1, multiclass
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(22Q13.31) MUTATED       10     40     14
  DEL PEAK 21(22Q13.31) WILD-TYPE     30     37     28
D26V2, multiclass
        clus
vv       DEL PEAK 21(22Q13.31) MUTATED DEL PEAK 21(22Q13.31) WILD-TYPE
  CLUS_1                            10                              30
  CLUS_2                            40                              37
  CLUS_3                            14                              28
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(22Q13.31) MUTATED       13     27      9
  DEL PEAK 21(22Q13.31) WILD-TYPE     41     26     15
D26V3, multiclass
        clus
vv       DEL PEAK 21(22Q13.31) MUTATED DEL PEAK 21(22Q13.31) WILD-TYPE
  CLUS_1                            13                              41
  CLUS_2                            27                              26
  CLUS_3                             9                              15
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 21(22Q13.31) MUTATED        8     21      8     12
  DEL PEAK 21(22Q13.31) WILD-TYPE     12     20     10     40
D26V4, multiclass
        clus
vv       DEL PEAK 21(22Q13.31) MUTATED DEL PEAK 21(22Q13.31) WILD-TYPE
  CLUS_1                             8                              12
  CLUS_2                            21                              20
  CLUS_3                             8                              10
  CLUS_4                            12                              40
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(22Q13.31) MUTATED        7     28     14
  DEL PEAK 21(22Q13.31) WILD-TYPE     27     27     28
D26V5, multiclass
        clus
vv       DEL PEAK 21(22Q13.31) MUTATED DEL PEAK 21(22Q13.31) WILD-TYPE
  CLUS_1                             7                              27
  CLUS_2                            28                              27
  CLUS_3                            14                              28
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(22Q13.31) MUTATED       14     23     12
  DEL PEAK 21(22Q13.31) WILD-TYPE     18     20     44
D26V6, multiclass
        clus
vv       DEL PEAK 21(22Q13.31) MUTATED DEL PEAK 21(22Q13.31) WILD-TYPE
  CLUS_1                            14                              18
  CLUS_2                            23                              20
  CLUS_3                            12                              44

Clustering(27) Variable = DEL PEAK 22(XP21.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 22(XP21.1) MUTATED        6      0     22     14      4      0
  DEL PEAK 22(XP21.1) WILD-TYPE     17     24     35     32      3      2
D27V1, multiclass
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(XP21.1) MUTATED        9     31      6
  DEL PEAK 22(XP21.1) WILD-TYPE     31     46     36
D27V2, multiclass
        clus
vv       DEL PEAK 22(XP21.1) MUTATED DEL PEAK 22(XP21.1) WILD-TYPE
  CLUS_1                           9                            31
  CLUS_2                          31                            46
  CLUS_3                           6                            36
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(XP21.1) MUTATED       11     22      2
  DEL PEAK 22(XP21.1) WILD-TYPE     43     31     22
D27V3, multiclass
        clus
vv       DEL PEAK 22(XP21.1) MUTATED DEL PEAK 22(XP21.1) WILD-TYPE
  CLUS_1                          11                            43
  CLUS_2                          22                            31
  CLUS_3                           2                            22
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 22(XP21.1) MUTATED        2     17      5     11
  DEL PEAK 22(XP21.1) WILD-TYPE     18     24     13     41
D27V4, multiclass
        clus
vv       DEL PEAK 22(XP21.1) MUTATED DEL PEAK 22(XP21.1) WILD-TYPE
  CLUS_1                           2                            18
  CLUS_2                          17                            24
  CLUS_3                           5                            13
  CLUS_4                          11                            41
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(XP21.1) MUTATED        6     23      6
  DEL PEAK 22(XP21.1) WILD-TYPE     28     32     36
D27V5, multiclass
        clus
vv       DEL PEAK 22(XP21.1) MUTATED DEL PEAK 22(XP21.1) WILD-TYPE
  CLUS_1                           6                            28
  CLUS_2                          23                            32
  CLUS_3                           6                            36
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(XP21.1) MUTATED        7     19      9
  DEL PEAK 22(XP21.1) WILD-TYPE     25     24     47
D27V6, multiclass
        clus
vv       DEL PEAK 22(XP21.1) MUTATED DEL PEAK 22(XP21.1) WILD-TYPE
  CLUS_1                           7                            25
  CLUS_2                          19                            24
  CLUS_3                           9                            47
> q(save="no")
