		Clinical Features	Time to Death		AGE		PATHOLOGY.T.STAGE		PATHOLOGY.N.STAGE		COMPLETENESS.OF.RESECTION		NUMBER.OF.LYMPH.NODES		GLEASON_SCORE_COMBINED		GLEASON_SCORE_PRIMARY		GLEASON_SCORE_SECONDARY		GLEASON_SCORE		PSA_RESULT_PREOP		DAYS_TO_PREOP_PSA		PSA_VALUE		DAYS_TO_PSA	
	nCNV (%)	nWild-Type	logrank test_P	logrank test_Q	t-test_P	t-test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	t-test_P	t-test_Q	t-test_P	t-test_Q	t-test_P	t-test_Q	t-test_P	t-test_Q	t-test_P	t-test_Q	t-test_P	t-test_Q	t-test_P	t-test_Q	t-test_P	t-test_Q	t-test_P	t-test_Q
amp_1q21.3	13 (6%)	192	100	1	0.51061	1	0.15794	1	0.33676	1	0.61203	1	0.53089	1	0.023483	1	0.022608	1	0.30771	1	0.034693	1	0.18576	1	0.55424	1	0.59062	1	0.92076	1
amp_3q22.1	25 (12%)	180	100	1	0.03144	1	0.0033031	1	0.70491	1	0.099973	1	0.46605	1	0.10073	1	0.008344	1	0.71017	1	0.006306	1	0.05728	1	0.21904	1	0.016786	1	0.17964	1
amp_3q26.2	33 (16%)	172	100	1	0.068202	1	0.024098	1	0.50272	1	1	1	0.31463	1	0.16811	1	0.02365	1	0.68301	1	0.02635	1	0.044087	1	0.65831	1	0.61707	1	0.99125	1
amp_4p16.3	10 (5%)	195	100	1	0.39631	1	0.027941	1	1	1	0.12593	1	0.48659	1	0.024805	1	0.031896	1	0.17646	1	0.023541	1	0.62151	1	0.3058	1	0.05907	1	0.67614	1
amp_4q13.3	4 (2%)	201	100	1	0.078775	1	0.095625	1	0.34306	1	0.26076	1	0.78592	1	0.13901	1	0.27282	1	0.080509	1	0.1499	1	0.29199	1	0.49902	1	0.79038	1	0.69616	1
amp_5q35.3	7 (3%)	198	100	1	0.0011144	0.811	0.014504	1	0.52396	1	0.69124	1	0.82418	1	0.28941	1	0.21396	1	0.80254	1	0.053135	1	0.67324	1	0.49534	1	0.00032689	0.245	0.62049	1
amp_7p15.3	39 (19%)	166	100	1	0.31509	1	0.015029	1	0.31997	1	0.026393	1	0.25985	1	0.02777	1	0.049947	1	0.22951	1	0.023902	1	0.024385	1	0.36532	1	0.45938	1	0.16499	1
amp_8p11.23	18 (9%)	187	100	1	0.13242	1	0.28778	1	0.17211	1	0.70472	1	0.3475	1	0.012534	1	0.010448	1	0.23011	1	0.010439	1	0.046883	1	0.45392	1	0.13683	1	0.19043	1
amp_8q24.21	51 (25%)	154	100	1	0.13558	1	0.019368	1	0.081781	1	0.93524	1	0.25129	1	1.9801e-05	0.0151	6.9748e-06	0.00534	0.12199	1	6.6726e-05	0.0509	0.03863	1	0.41646	1	0.35663	1	0.65081	1
amp_9q34.3	20 (10%)	185	100	1	0.32086	1	0.0084621	1	0.00042921	0.32	0.72864	1	0.055655	1	0.00043312	0.323	0.00015803	0.12	0.091456	1	0.00043929	0.327	0.06493	1	0.24067	1	0.18055	1	0.86103	1
amp_11q13.3	11 (5%)	194	100	1	0.29571	1	0.015438	1	0.062496	1	1	1	0.29328	1	0.047576	1	0.0018328	1	0.85457	1	0.032524	1	0.37163	1	0.10113	1	0.073678	1	0.76782	1
amp_12q24.32	7 (3%)	198	100	1	0.94303	1	0.15753	1	0.14376	1	0.28863	1	0.37573	1	0.086782	1	0.024446	1	0.74601	1	0.032411	1	0.2717	1	0.12567	1	0.97738	1	0.19974	1
amp_14q21.1	10 (5%)	195	100	1	0.00039339	0.294	0.25573	1	0.573	1	1	1	0.70001	1	0.042379	1	0.19321	1	0.28959	1	0.004963	1	0.44874	1	0.69227	1	0.85089	1	0.11499	1
amp_15q11.2	6 (3%)	199	100	1	0.24076	1	0.50093	1	1	1	0.65974	1	0.00079422	0.583	0.70568	1	0.37127	1	0.27166	1	0.54544	1	0.0094199	1	0.54945	1	0.000568	0.421	0.3544	1
amp_19q13.43	5 (2%)	200	100	1	0.27335	1	0.01893	1	1	1	1	1	0.00079422	0.583	0.1543	1	0.16062	1	0.306	1	0.045056	1	0.3131	1	0.75759	1	0.63677	1	0.32037	1
amp_20q13.31	11 (5%)	194	100	1	0.013882	1	0.00019159	0.146	0.60428	1	0.42932	1	0.00078948	0.582	0.065601	1	9.526e-06	0.00729	0.87103	1	0.03161	1	0.19366	1	0.89486	1	0.66006	1	0.17672	1
amp_xp22.11	8 (4%)	197	100	1	0.96152	1	0.41971	1	0.573	1	1	1	0.77075	1	0.34188	1	0.27556	1	0.90183	1	0.43358	1	0.39274	1	0.72503	1	0.00022001	0.166	0.00025308	0.191
amp_xp22.11	8 (4%)	197	100	1	0.30839	1	0.41971	1	0.573	1	1	1	0.77075	1	0.34188	1	0.1025	1	0.44406	1	0.77876	1	0.28947	1	0.43733	1	0.00021424	0.162	0.067859	1
amp_xp21.1	7 (3%)	198	100	1	0.2232	1	0.26706	1	0.52396	1	1	1	0.82418	1	0.52888	1	0.40141	1	0.76722	1	0.35948	1	0.45339	1	0.71654	1	0.00026746	0.201	0.17165	1
amp_xq21.1	7 (3%)	198	100	1	0.66904	1	0.54195	1	0.52396	1	0.4581	1	0.70763	1	0.52888	1	0.60553	1	0.74601	1	0.45265	1	0.98674	1	0.37319	1	0.00020377	0.154	0.6585	1
amp_xq21.1	5 (2%)	200	100	1	0.30694	1	0.44894	1	0.077152	1	0.63598	1	0.33314	1	0.40375	1	0.60146	1	0.50099	1	0.46457	1	0.4082	1	0.17795	1	0.00028314	0.213	0.43593	1
amp_xq21.31	5 (2%)	200	100	1	0.21862	1	1	1	1	1	0.63598	1	0.00079422	0.583	0.30308	1	4.3462e-30	3.34e-27	0.95424	1	0.61781	1	0.46106	1	0.35912	1	0.54498	1	0.78185	1
amp_xq25	3 (1%)	202	100	1	1.6206e-08	1.24e-05	1	1	1	1	1	1	0.00079573	0.583	0.5783	1	0.6	1	0.72626	1	0.61865	1	0.70765	1	0.43737	1	NA	NA	NA	NA
amp_xq25	6 (3%)	199	100	1	0.76974	1	0.73144	1	0.46964	1	0.65974	1	0.95555	1	0.34113	1	0.8744	1	0.24371	1	0.54544	1	0.8428	1	0.53254	1	0.00020486	0.155	0.5214	1
amp_xq27.1	9 (4%)	196	100	1	0.27882	1	1	1	1	1	1	1	0.00079189	0.583	0.95778	1	0.60635	1	0.66104	1	0.78833	1	0.079302	1	0.1282	1	0.00068705	0.508	0.15707	1
del_1p31.3	27 (13%)	178	100	1	0.55399	1	0.11549	1	0.7105	1	0.10085	1	0.80049	1	0.010584	1	0.097638	1	0.027242	1	0.021037	1	0.62756	1	0.62711	1	0.76613	1	0.2107	1
del_1q23.1	9 (4%)	196	100	1	0.70575	1	1	1	1	1	1	1	0.00079189	0.583	0.53762	1	0.24689	1	0.9797	1	0.87975	1	0.21799	1	0.072069	1	0.073182	1	0.00030331	0.227
del_1q42.2	16 (8%)	189	100	1	0.21458	1	0.30024	1	0.19876	1	0.28019	1	0.47443	1	0.60374	1	0.28906	1	0.48873	1	0.16949	1	0.36372	1	0.62674	1	0.4431	1	0.83289	1
del_2p22.1	12 (6%)	193	100	1	0.99679	1	0.13361	1	0.019993	1	0.55661	1	0.21571	1	0.030354	1	0.040353	1	0.11202	1	0.040373	1	0.93574	1	0.53197	1	0.61831	1	0.19119	1
del_2q22.1	27 (13%)	178	100	1	0.0055883	1	0.58912	1	1	1	0.48851	1	0.60434	1	0.1093	1	0.001252	0.91	0.4242	1	0.046952	1	0.81325	1	0.048337	1	0.043946	1	0.4977	1
del_2q22.3	23 (11%)	182	100	1	0.08259	1	0.59645	1	1	1	0.67045	1	0.44487	1	0.48907	1	0.10451	1	0.58554	1	0.084409	1	0.86145	1	0.6053	1	0.069703	1	0.16163	1
del_3p13	32 (16%)	173	100	1	0.15715	1	0.49224	1	1	1	0.16439	1	0.75064	1	0.72558	1	0.77941	1	0.83795	1	0.64767	1	0.65728	1	0.79297	1	0.40908	1	0.88004	1
del_3q29	11 (5%)	194	100	1	0.27446	1	0.65959	1	1	1	1	1	0.97645	1	0.90604	1	0.97086	1	0.79355	1	0.79161	1	0.68728	1	0.81719	1	0.00037114	0.278	0.99237	1
del_4q28.2	17 (8%)	188	100	1	0.032451	1	0.058833	1	0.64646	1	0.56059	1	0.66121	1	0.18818	1	0.091124	1	0.75518	1	0.12727	1	0.84857	1	0.19305	1	0.00018316	0.139	0.65327	1
del_5q11.2	28 (14%)	177	100	1	0.16103	1	0.00072375	0.534	0.00067363	0.499	1	1	0.048408	1	0.0025957	1	0.0037449	1	0.11451	1	0.0029719	1	0.020778	1	0.98328	1	0.45581	1	0.19649	1
del_5q21.1	36 (18%)	169	100	1	0.023484	1	0.88081	1	0.10077	1	1	1	0.25009	1	0.07251	1	0.0025305	1	0.64129	1	0.041522	1	0.64941	1	0.8993	1	0.39554	1	0.6517	1
del_6q14.3	64 (31%)	141	100	1	0.043325	1	0.49722	1	0.0066731	1	0.024092	1	0.014451	1	0.00081643	0.596	0.00025703	0.194	0.3861	1	0.0009983	0.728	0.0051228	1	0.27698	1	0.078147	1	0.78186	1
del_8p21.3	115 (56%)	90	100	1	0.37219	1	0.00045202	0.336	0.066063	1	0.70381	1	0.01273	1	0.13843	1	0.00019579	0.149	0.1179	1	0.25263	1	0.0015297	1	0.21102	1	0.63207	1	0.35922	1
del_8p11.21	66 (32%)	139	100	1	0.11233	1	0.14274	1	1	1	0.011384	1	0.73499	1	0.77071	1	0.16501	1	0.088912	1	0.48922	1	0.35086	1	0.11397	1	0.13469	1	0.13161	1
del_9p23	18 (9%)	187	100	1	0.782	1	0.28778	1	0.015222	1	0.70472	1	0.15187	1	0.03272	1	0.014506	1	0.48995	1	0.079034	1	0.18967	1	0.28115	1	0.90142	1	0.77735	1
del_10q23.31	67 (33%)	138	100	1	0.8945	1	0.019175	1	0.0028555	1	0.75694	1	0.14924	1	0.0647	1	0.20543	1	0.21111	1	0.018436	1	0.95573	1	0.54731	1	0.15527	1	0.28496	1
del_11q23.2	18 (9%)	187	100	1	0.48735	1	0.0086657	1	1	1	0.56059	1	0.14248	1	0.31667	1	0.2439	1	0.96169	1	0.22576	1	0.24371	1	0.70852	1	0.31376	1	0.951	1
del_12p13.1	43 (21%)	162	100	1	0.95073	1	0.13088	1	0.12855	1	0.54021	1	0.44132	1	0.077659	1	0.011225	1	0.97106	1	0.060389	1	0.83036	1	0.27949	1	0.96774	1	0.56808	1
del_12q24.31	18 (9%)	187	100	1	0.7672	1	0.45081	1	0.3818	1	1	1	1	1	0.10798	1	0.29062	1	0.29388	1	0.13834	1	0.17898	1	0.39066	1	0.023133	1	0.8287	1
del_13q14.12	88 (43%)	117	100	1	0.03083	1	0.57483	1	0.30454	1	0.31229	1	0.23968	1	0.089086	1	0.1985	1	0.34117	1	0.023063	1	0.073948	1	0.53949	1	0.67589	1	0.381	1
del_13q22.1	72 (35%)	133	100	1	0.026681	1	0.12755	1	0.065538	1	0.80422	1	0.12111	1	0.043219	1	0.15411	1	0.1997	1	0.0042352	1	0.018796	1	0.18172	1	0.98341	1	0.40567	1
del_15q21.3	20 (10%)	185	100	1	0.69613	1	0.099886	1	0.015222	1	0.62726	1	0.11192	1	0.0032681	1	0.00067814	0.502	0.39898	1	0.0041005	1	0.35068	1	0.34174	1	0.92142	1	0.3827	1
del_16q22.3	71 (35%)	134	100	1	0.18957	1	0.022519	1	0.18501	1	1	1	0.12294	1	0.0046654	1	0.0012937	0.939	0.4579	1	0.0047496	1	0.08494	1	0.56299	1	0.057792	1	0.3523	1
del_16q23.3	81 (40%)	124	100	1	0.28418	1	0.036118	1	0.4405	1	0.94872	1	0.19993	1	0.0018969	1	0.0026948	1	0.21214	1	0.0025743	1	0.14175	1	0.77608	1	0.040693	1	0.3805	1
del_17p13.1	52 (25%)	153	100	1	0.75194	1	0.012257	1	0.0033556	1	0.52141	1	0.067112	1	0.0025839	1	0.0045309	1	0.15015	1	0.0024413	1	0.11476	1	0.70679	1	0.10222	1	0.64987	1
del_17q21.31	39 (19%)	166	100	1	0.95505	1	0.56146	1	0.7484	1	0.16659	1	0.70577	1	0.58742	1	0.58743	1	0.79643	1	0.58812	1	0.14718	1	0.94993	1	0.96325	1	0.89024	1
del_18q22.1	51 (25%)	154	100	1	0.5336	1	0.34117	1	0.37506	1	0.21953	1	0.48906	1	0.014415	1	0.11116	1	0.048524	1	0.011361	1	0.45752	1	0.68165	1	0.41159	1	0.95955	1
del_19q13.2	17 (8%)	188	100	1	0.13812	1	0.19264	1	0.069417	1	0.2327	1	0.3346	1	0.063387	1	0.043869	1	0.49454	1	0.055836	1	0.30283	1	0.71398	1	0.60463	1	0.41376	1
del_21q22.2	21 (10%)	184	100	1	0.18108	1	0.056717	1	0.0024126	1	0.63856	1	0.061143	1	0.67209	1	0.92714	1	0.52625	1	0.82974	1	0.28321	1	0.24742	1	0.27059	1	0.93226	1
del_21q22.3	58 (28%)	147	100	1	1	1	0.016531	1	0.001748	1	0.29108	1	0.046116	1	0.25631	1	0.42727	1	0.41138	1	0.42239	1	0.22554	1	0.032173	1	0.27446	1	0.54852	1
