
R version 2.10.1 (2009-12-14)
Copyright (C) 2009 The R Foundation for Statistical Computing
ISBN 3-900051-07-0

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> source("/xchip/tcga/gdac_prod/applications/process_mgmt/firehose_task_registry/tcga-gdac/GDAC_Correlate_Genomic_Events/broadinstitute.org/cancer.genome.analysis/10441/13/Correlate_Genomic_Events.R")
> result <- main("/xchip/tcga/gdac_prod/applications/process_mgmt/firehose_task_registry/tcga-gdac/GDAC_Correlate_Genomic_Events/broadinstitute.org/cancer.genome.analysis/10441/13/", "-nF=/xchip/tcga/Tools/Nozzle/v1.current", "-tTRUE", "-iD=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering/PRAD-TP/8282702/PRAD-TP.mergedcluster.txt", "-iC=/xchip/cga/gdac-prod/tcga-gdac/jobResults/Append_Data/PRAD-TP/8143121/PRAD-TP.merged_data.txt", "-fF=", "-fC=3", "-fH=5", "-fW=9", "-fP=OUT", "-cP=.05", "-cQ=0.25", "-MF=ALL", "-oT=PRAD-TP", "-nV=Nozzle.R1", "-OP=AGGREGRATED_CLUSTER", "-iT=", "-iX=")
[1] "terrence_modification_tag"
[1] TRUE
[1] "nver"          "-nV=Nozzle.R1"
[1] "nfn"                                 "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "successfully load Nozzle.R1"
[1] "ofn"         "-oT=PRAD-TP"
[1] "opt"                     "-OP=AGGREGRATED_CLUSTER"
[1] "tl"   "-iT="
[1] "dx"   "-iX="
[1] "opt"                 "AGGREGRATED_CLUSTER"
[1] "dx" ""  
[1] "cfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/Append_Data/PRAD-TP/8143121/PRAD-TP.merged_data.txt"
[1] "dfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering/PRAD-TP/8282702/PRAD-TP.mergedcluster.txt"

nPatients in clinical file=210, in cluster file=336, common to both=206
[1]  10 206
[1] "CN_CNMF"
[1] 3
  1   2   3 
 30 117  58 
  1   2   3 
 30 117  58 
[1] "METHLYATION_CNMF"
[1] 3
 1  2  3 
59 71 76 
 1  2  3 
59 71 76 
[1] "RPPA_CNMF"
[1] 3
 1  2  3 
42 50 54 
 1  2  3 
42 50 54 
[1] "RPPA_CHIERARCHICAL"
[1] 3
 1  2  3 
51 55 40 
 1  2  3 
51 55 40 
[1] "MRNASEQ_CNMF"
[1] 3
 1  2  3 
64 72 70 
 1  2  3 
64 72 70 
[1] "MRNASEQ_CHIERARCHICAL"
[1] 3
 1  2  3 
60 76 70 
 1  2  3 
60 76 70 
[1] "MIRSEQ_CNMF"
[1] 3
 1  2  3  4  5 
63 32 68 14 25 
 1  2  3  4  5 
63 32 68 14 25 
[1] "MIRSEQ_CHIERARCHICAL"
[1] 3
 1  2  3  4 
37 34 71 60 
 1  2  3  4 
37 34 71 60 
[1] "MIRSEQ_MATURE_CNMF"
[1] 3
 1  2  3  4  5 
80 12 73 26 11 
 1  2  3  4  5 
80 12 73 26 11 
[1] "MIRSEQ_MATURE_CHIERARCHICAL"
[1] 3
 1  2  3  4 
67 28 64 43 
 1  2  3  4 
67 28 64 43 
[1] "terrence_modification_tag"
[1] TRUE
[1] "data2feature, selection="
 [1] "YEARSTOBIRTH"                          
 [2] "VITALSTATUS"                           
 [3] "DAYSTODEATH"                           
 [4] "DAYSTOLASTFOLLOWUP"                    
 [5] "PRIMARYSITEOFDESEASE"                  
 [6] "NEOPLASM.DISEASESTAGE"                 
 [7] "PATHOLOGY.T.STAGE"                     
 [8] "PATHOLOGY.N.STAGE"                     
 [9] "PATHOLOGY.M.STAGE"                     
[10] "DCCUPLOADDATE"                         
[11] "GENDER"                                
[12] "DATEOFINITIALPATHOLOGICDIAGNOSIS"      
[13] "RADIATIONTHERAPY"                      
[14] "HISTOLOGICALTYPE"                      
[15] "RADIATIONS.RADIATION.REGIMENINDICATION"
[16] "COMPLETENESS.OF.RESECTION"             
[17] "NUMBER.OF.LYMPH.NODES"                 
[18] "GLEASON_SCORE_COMBINED"                
[19] "GLEASON_SCORE_PRIMARY"                 
[20] "GLEASON_SCORE_SECONDARY"               
[21] "HIGHEST_GLEASON_SCORE"                 
[22] "GLEASON_SCORE"                         
[23] "PSA_RESULT_PREOP"                      
[24] "DAYS_TO_PREOP_PSA"                     
[25] "PSA_VALUE"                             
[26] "DAYS_TO_PSA"                           
[27] "BATCHNUMBER"                           

Input Data has 27 rows and 206 columns.

[1] "Batch" "27"   
[1] "Last Follow UP"
TCGA-CH-5737 TCGA-CH-5738 TCGA-CH-5739 TCGA-CH-5740 TCGA-CH-5741 TCGA-CH-5743 
          91          212          671           31          395          425 
TCGA-CH-5744 TCGA-CH-5745 TCGA-CH-5746 TCGA-CH-5748 TCGA-CH-5750 TCGA-CH-5751 
          60           91          731           31          396         1065 
TCGA-CH-5752 TCGA-CH-5753 TCGA-CH-5754 TCGA-CH-5761 TCGA-CH-5762 TCGA-CH-5763 
         943           31           62           28         1339          365 
TCGA-CH-5764 TCGA-CH-5765 TCGA-CH-5766 TCGA-CH-5767 TCGA-CH-5768 TCGA-CH-5769 
          31          700           31          458          731           62 
TCGA-CH-5771 TCGA-CH-5772 TCGA-CH-5788 TCGA-CH-5789 TCGA-CH-5790 TCGA-CH-5791 
         396          486          821          304          974         1004 
TCGA-CH-5792 TCGA-CH-5794 TCGA-EJ-5494 TCGA-EJ-5495 TCGA-EJ-5496 TCGA-EJ-5497 
          91          882          826         1007          595          405 
TCGA-EJ-5498 TCGA-EJ-5499 TCGA-EJ-5501 TCGA-EJ-5502 TCGA-EJ-5503 TCGA-EJ-5504 
         906          533          937          245          716          880 
TCGA-EJ-5505 TCGA-EJ-5506 TCGA-EJ-5507 TCGA-EJ-5508 TCGA-EJ-5509 TCGA-EJ-5510 
         922          827          727         1184         1102         1116 
TCGA-EJ-5511 TCGA-EJ-5512 TCGA-EJ-5514 TCGA-EJ-5515 TCGA-EJ-5516 TCGA-EJ-5517 
         974         1172         1102         1240         1416         1454 
TCGA-EJ-5518 TCGA-EJ-5519 TCGA-EJ-5521 TCGA-EJ-5522 TCGA-EJ-5524 TCGA-EJ-5525 
        1590         1336         1578         1462         1310         1115 
TCGA-EJ-5526 TCGA-EJ-5527 TCGA-EJ-5530 TCGA-EJ-5531 TCGA-EJ-5532 TCGA-EJ-5542 
        1179         1209         1272          921         1456          884 
TCGA-EJ-7115 TCGA-EJ-7123 TCGA-EJ-7125 TCGA-EJ-7314 TCGA-EJ-7315 TCGA-EJ-7317 
         822         1491         1860          295          289          285 
TCGA-EJ-7321 TCGA-EJ-7327 TCGA-EJ-7328 TCGA-EJ-7330 TCGA-EJ-7331 TCGA-EJ-7781 
         233          175          170          191            9          169 
TCGA-EJ-7782 TCGA-EJ-7783 TCGA-EJ-7784 TCGA-EJ-7785 TCGA-EJ-7786 TCGA-EJ-7788 
          64          131          167          625          442           52 
TCGA-EJ-7789 TCGA-EJ-7791 TCGA-EJ-7792 TCGA-EJ-7793 TCGA-EJ-7794 TCGA-EJ-7797 
         552          596          526           43          701          369 
TCGA-EJ-8468 TCGA-EJ-8469 TCGA-EJ-8470 TCGA-EJ-8472 TCGA-EJ-8474 TCGA-EJ-A46B 
        1961         1946          821           NA          314          162 
TCGA-EJ-A46D TCGA-EJ-A46E TCGA-EJ-A46F TCGA-EJ-A46G TCGA-EJ-A46H TCGA-EJ-A46I 
         129          532          299           93          229          668 
TCGA-FC-7708 TCGA-FC-7961 TCGA-FC-A4JI TCGA-FC-A5OB TCGA-FC-A66V TCGA-FC-A6HD 
         864          469          409          273          524           54 
TCGA-G9-6329 TCGA-G9-6332 TCGA-G9-6333 TCGA-G9-6336 TCGA-G9-6338 TCGA-G9-6339 
        1266         2657         2465         2068         2028         2110 
TCGA-G9-6342 TCGA-G9-6343 TCGA-G9-6347 TCGA-G9-6348 TCGA-G9-6351 TCGA-G9-6353 
        1696          554         1718         1515         1404         1542 
TCGA-G9-6354 TCGA-G9-6356 TCGA-G9-6361 TCGA-G9-6362 TCGA-G9-6363 TCGA-G9-6364 
        1501         1434         1415         1443         1378         1198 
TCGA-G9-6365 TCGA-G9-6366 TCGA-G9-6367 TCGA-G9-6369 TCGA-G9-6370 TCGA-G9-6371 
        1363          101         1222         1215         1156         1226 
TCGA-G9-6373 TCGA-G9-6377 TCGA-G9-6378 TCGA-G9-6379 TCGA-G9-6384 TCGA-G9-6385 
         811          958         1155         1393          765          830 
TCGA-G9-6494 TCGA-G9-6496 TCGA-G9-6498 TCGA-G9-6499 TCGA-G9-7510 TCGA-G9-7519 
        1771         1726         1608         1543         1185          849 
TCGA-G9-7521 TCGA-G9-7522 TCGA-G9-7523 TCGA-G9-7525 TCGA-H9-7775 TCGA-H9-A6BX 
         942          648          857          994          185          570 
TCGA-H9-A6BY TCGA-HC-7075 TCGA-HC-7077 TCGA-HC-7078 TCGA-HC-7079 TCGA-HC-7080 
         112          601           NA          162           89           61 
TCGA-HC-7209 TCGA-HC-7211 TCGA-HC-7212 TCGA-HC-7213 TCGA-HC-7230 TCGA-HC-7231 
          41           24          870           60           51           72 
TCGA-HC-7233 TCGA-HC-7736 TCGA-HC-7737 TCGA-HC-7740 TCGA-HC-7742 TCGA-HC-7744 
          52           22           64           53           45           51 
TCGA-HC-7747 TCGA-HC-7748 TCGA-HC-7749 TCGA-HC-7750 TCGA-HC-7752 TCGA-HC-7817 
          57          792           60           34           98           32 
TCGA-HC-7818 TCGA-HC-7821 TCGA-HC-8216 TCGA-HC-8265 TCGA-HC-A48F TCGA-HC-A4ZV 
          45           56          682          483           46           23 
TCGA-HC-A632 TCGA-HC-A6AL TCGA-HC-A6AO TCGA-HC-A6AP TCGA-HC-A6AQ TCGA-HC-A6AS 
          61           67          167           71          106           44 
TCGA-HC-A6HX TCGA-HC-A6HY TCGA-HI-7168 TCGA-HI-7169 TCGA-HI-7170 TCGA-HI-7171 
          38          134         2391         1949         1899           NA 
TCGA-J4-8198 TCGA-J4-8200 TCGA-J4-A67M TCGA-J4-A67N TCGA-J4-A67O TCGA-J4-A83K 
         614          374          488          503          491          206 
TCGA-M7-A71Y TCGA-M7-A71Z TCGA-M7-A720 TCGA-M7-A721 TCGA-M7-A724 TCGA-QU-A6IL 
         158          209          302          204          483           97 
TCGA-QU-A6IM TCGA-QU-A6IP 
        1247         2620 
Variable 1:'AGE':	nDistinctValues=31,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 2:'VITALSTATUS':	nDistinctValues=2,	numeric=TRUE,	binary=TRUE,	exclude=TRUE.
Variable 3:'DAYSTODEATH':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 4:'DAYSTOLASTFOLLOWUP':	nDistinctValues=182,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 5:'PRIMARY.SITE.OF.DISEASE':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 6:'NEOPLASM.DISEASESTAGE':	nDistinctValues=0,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 7:'PATHOLOGY.T.STAGE':	nDistinctValues=6,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'PATHOLOGY.N.STAGE':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 9:'PATHOLOGY.M.STAGE':	nDistinctValues=0,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 10:'DCCUPLOADDAY':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 11:'GENDER':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 12:'DAYOFINITIALPATHOLOGICDIAGNOSIS':	nDistinctValues=12,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 13:'RADIATION.THERAPY':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 14:'HISTOLOGICAL.TYPE':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 15:'RADIATIONS.RADIATION.REGIMENINDICATION':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 16:'COMPLETENESS.OF.RESECTION':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 17:'NUMBER.OF.LYMPH.NODES':	nDistinctValues=5,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 18:'GLEASON_SCORE_COMBINED':	nDistinctValues=6,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 19:'GLEASON_SCORE_PRIMARY':	nDistinctValues=5,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 20:'GLEASON_SCORE_SECONDARY':	nDistinctValues=4,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 21:'HIGHEST_GLEASON_SCORE':	nDistinctValues=0,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 22:'GLEASON_SCORE':	nDistinctValues=5,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 23:'PSA_RESULT_PREOP':	nDistinctValues=123,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 24:'DAYS_TO_PREOP_PSA':	nDistinctValues=109,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 25:'PSA_VALUE':	nDistinctValues=53,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 26:'DAYS_TO_PSA':	nDistinctValues=166,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 27:'BATCH.NUMBER':	nDistinctValues=22,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
[1] "rownames(nsurv.mat)"
 [1] "AGE"                       "PATHOLOGY.T.STAGE"        
 [3] "PATHOLOGY.N.STAGE"         "COMPLETENESS.OF.RESECTION"
 [5] "NUMBER.OF.LYMPH.NODES"     "GLEASON_SCORE_COMBINED"   
 [7] "GLEASON_SCORE_PRIMARY"     "GLEASON_SCORE_SECONDARY"  
 [9] "GLEASON_SCORE"             "PSA_RESULT_PREOP"         
[11] "DAYS_TO_PREOP_PSA"         "PSA_VALUE"                
[13] "DAYS_TO_PSA"              
[1] "TUMOR.?STAGE"
[1] "TUMOR.?GRADE"
[1] "PATHOLOGY.T" "2"          
[1] "PATHOLOGY.N" "3"          
Output Data has 206 columns, 1 survival variables, and 13 non-survival variables.
AGE, nv=31, binary=FALSE, numeric=TRUE
PATHOLOGY.T.STAGE, nv=3, binary=FALSE, numeric=TRUE
[1] "grepl('PATHOLOGY.T',vnm)"
vv
 T2  T3  T4 
 92 107   5 
[1] "table(vv)"
vv
 T2  T3  T4 
 92 107   5 
$ClinVariableName
[1] "PATHOLOGY.T.STAGE"

$Table
vv
 T2  T3  T4 
 92 107   5 

$nClasses
[1] 3

$ClinVariableType
[1] "multiclass(3)"


 T2  T3  T4 
 92 107   5 
PATHOLOGY.N.STAGE, nv=2, binary=FALSE, numeric=TRUE
COMPLETENESS.OF.RESECTION, nv=3, binary=FALSE, numeric=FALSE
NUMBER.OF.LYMPH.NODES, nv=5, binary=FALSE, numeric=TRUE
GLEASON_SCORE_COMBINED, nv=6, binary=FALSE, numeric=TRUE
GLEASON_SCORE_PRIMARY, nv=5, binary=FALSE, numeric=TRUE
GLEASON_SCORE_SECONDARY, nv=4, binary=FALSE, numeric=TRUE
GLEASON_SCORE, nv=5, binary=FALSE, numeric=TRUE
PSA_RESULT_PREOP, nv=123, binary=FALSE, numeric=TRUE
DAYS_TO_PREOP_PSA, nv=109, binary=FALSE, numeric=TRUE
PSA_VALUE, nv=53, binary=FALSE, numeric=TRUE
DAYS_TO_PSA, nv=166, binary=FALSE, numeric=TRUE

Clustering(1) Variable = CN_CNMF
D1V1, survival
          sevent
clus2        0   1
  subtype1  30   0
  subtype2 117   0
  subtype3  57   1
subtype1 subtype2 subtype3 
      30      117       58 
subtype1 subtype2 subtype3 
       0        0        1 
$subtype1
TCGA-CH-5737 TCGA-CH-5740 TCGA-CH-5748 TCGA-CH-5767 TCGA-CH-5772 TCGA-CH-5792 
        2.99         1.02         1.02        15.06        15.98         2.99 
TCGA-EJ-5494 TCGA-EJ-5504 TCGA-EJ-5505 TCGA-EJ-5509 TCGA-EJ-5515 TCGA-EJ-5531 
       27.16        28.93        30.31        36.23        40.77        30.28 
TCGA-EJ-7125 TCGA-EJ-7317 TCGA-EJ-7331 TCGA-EJ-7782 TCGA-EJ-7786 TCGA-EJ-7792 
       61.15         9.37         0.30         2.10        14.53        17.29 
TCGA-EJ-7794 TCGA-EJ-8468 TCGA-FC-A5OB TCGA-G9-6366 TCGA-G9-6498 TCGA-HC-7080 
       23.05        64.47         8.98         3.32        52.87         2.01 
TCGA-HC-7737 TCGA-HC-7744 TCGA-HC-A6AP TCGA-HC-A6AS TCGA-M7-A721 TCGA-QU-A6IM 
        2.10         1.68         2.33         1.45         6.71        41.00 

$subtype2
TCGA-CH-5738 TCGA-CH-5739 TCGA-CH-5741 TCGA-CH-5743 TCGA-CH-5744 TCGA-CH-5746 
        6.97        22.06        12.99        13.97         1.97        24.03 
TCGA-CH-5750 TCGA-CH-5752 TCGA-CH-5763 TCGA-CH-5764 TCGA-CH-5765 TCGA-CH-5768 
       13.02        31.00        12.00         1.02        23.01        24.03 
TCGA-CH-5769 TCGA-CH-5771 TCGA-CH-5789 TCGA-CH-5790 TCGA-CH-5794 TCGA-EJ-5497 
        2.04        13.02         9.99        32.02        29.00        13.32 
TCGA-EJ-5498 TCGA-EJ-5499 TCGA-EJ-5501 TCGA-EJ-5502 TCGA-EJ-5503 TCGA-EJ-5506 
       29.79        17.52        30.81         8.05        23.54        27.19 
TCGA-EJ-5508 TCGA-EJ-5512 TCGA-EJ-5517 TCGA-EJ-5522 TCGA-EJ-5530 TCGA-EJ-5532 
       38.93        38.53        47.80        48.07        41.82        47.87 
TCGA-EJ-5542 TCGA-EJ-7115 TCGA-EJ-7314 TCGA-EJ-7327 TCGA-EJ-7328 TCGA-EJ-7781 
       29.06        27.02         9.70         5.75         5.59         5.56 
TCGA-EJ-7783 TCGA-EJ-7785 TCGA-EJ-7788 TCGA-EJ-7791 TCGA-EJ-7793 TCGA-EJ-7797 
        4.31        20.55         1.71        19.59         1.41        12.13 
TCGA-EJ-8474 TCGA-EJ-A46B TCGA-EJ-A46D TCGA-EJ-A46E TCGA-EJ-A46H TCGA-EJ-A46I 
       10.32         5.33         4.24        17.49         7.53        21.96 
TCGA-FC-7708 TCGA-FC-A66V TCGA-FC-A6HD TCGA-G9-6329 TCGA-G9-6332 TCGA-G9-6333 
       28.41        17.23         1.78        41.62        65.92        65.95 
TCGA-G9-6336 TCGA-G9-6339 TCGA-G9-6342 TCGA-G9-6343 TCGA-G9-6347 TCGA-G9-6348 
       65.98        65.98        55.76        18.21        56.48        49.81 
TCGA-G9-6351 TCGA-G9-6353 TCGA-G9-6354 TCGA-G9-6356 TCGA-G9-6361 TCGA-G9-6362 
       46.16        50.70        49.35        47.15        46.52        47.44 
TCGA-G9-6363 TCGA-G9-6364 TCGA-G9-6365 TCGA-G9-6367 TCGA-G9-6369 TCGA-G9-6370 
       45.30        39.39        44.81        40.18        39.95        38.01 
TCGA-G9-6371 TCGA-G9-6378 TCGA-G9-6379 TCGA-G9-6384 TCGA-G9-6385 TCGA-G9-6494 
       40.31        37.97        45.80        25.15        27.29        58.22 
TCGA-G9-7519 TCGA-G9-7522 TCGA-G9-7523 TCGA-G9-7525 TCGA-H9-7775 TCGA-H9-A6BX 
       27.91        21.30        28.18        32.68         6.08        18.74 
TCGA-H9-A6BY TCGA-HC-7075 TCGA-HC-7077 TCGA-HC-7079 TCGA-HC-7209 TCGA-HC-7211 
        3.68        19.76        65.98         2.93         1.35         0.79 
TCGA-HC-7230 TCGA-HC-7233 TCGA-HC-7740 TCGA-HC-7747 TCGA-HC-7748 TCGA-HC-7750 
        1.68         1.71         1.74         1.87        26.04         1.12 
TCGA-HC-7752 TCGA-HC-7817 TCGA-HC-7818 TCGA-HC-A6AL TCGA-HC-A6AO TCGA-HC-A6AQ 
        3.22         1.05         1.48         2.20         5.49         3.48 
TCGA-HC-A6HX TCGA-HC-A6HY TCGA-HI-7169 TCGA-HI-7170 TCGA-J4-8198 TCGA-J4-8200 
        1.25         4.41        64.08        62.43        20.19        12.30 
TCGA-J4-A67M TCGA-J4-A67N TCGA-J4-A67O TCGA-J4-A83K TCGA-M7-A71Y TCGA-M7-A71Z 
       16.04        16.54        16.14         6.77         5.19         6.87 
TCGA-M7-A720 TCGA-QU-A6IL TCGA-QU-A6IP 
        9.93         3.19        65.88 

$subtype3
TCGA-CH-5751 TCGA-CH-5753 TCGA-CH-5754 TCGA-CH-5761 TCGA-CH-5762 TCGA-CH-5766 
       35.01         1.02         2.04         0.92        44.02         1.02 
TCGA-CH-5788 TCGA-CH-5791 TCGA-EJ-5495 TCGA-EJ-5496 TCGA-EJ-5507 TCGA-EJ-5510 
       26.99        33.01        33.11        19.56        23.90        36.69 
TCGA-EJ-5511 TCGA-EJ-5514 TCGA-EJ-5516 TCGA-EJ-5518 TCGA-EJ-5519 TCGA-EJ-5521 
       32.02        36.23        46.55        52.27        43.92        51.88 
TCGA-EJ-5524 TCGA-EJ-5525 TCGA-EJ-5526 TCGA-EJ-5527 TCGA-EJ-7123 TCGA-EJ-7315 
       43.07        36.66        38.76        39.75        49.02         9.50 
TCGA-EJ-7321 TCGA-EJ-7330 TCGA-EJ-7784 TCGA-EJ-7789 TCGA-EJ-8469 TCGA-EJ-8470 
        7.66         6.28         5.49        18.15        63.98        26.99 
TCGA-EJ-8472 TCGA-EJ-A46F TCGA-EJ-A46G TCGA-FC-7961 TCGA-FC-A4JI TCGA-G9-6338 
       66.12         9.83         3.06        15.42        13.45        65.98 
TCGA-G9-6373 TCGA-G9-6377 TCGA-G9-6496 TCGA-G9-6499 TCGA-G9-7510 TCGA-G9-7521 
       26.66        31.50        56.75        50.73        38.96        30.97 
TCGA-HC-7078 TCGA-HC-7212 TCGA-HC-7213 TCGA-HC-7231 TCGA-HC-7736 TCGA-HC-7742 
        5.33        28.60         1.97         2.37         0.72         1.48 
TCGA-HC-7749 TCGA-HC-7821 TCGA-HC-8216 TCGA-HC-8265 TCGA-HC-A48F TCGA-HC-A4ZV 
        1.97         1.84        22.42        15.88         1.51         0.76 
TCGA-HC-A632 TCGA-HI-7168 TCGA-HI-7171 TCGA-M7-A724 
        2.01        65.92        66.02        15.88 

subtype1 subtype2 subtype3 
    0.30     0.79     0.72 
subtype1 subtype2 subtype3 
   64.47    65.98    66.12 
subtype1 subtype2 subtype3 
  11.950   19.760   26.825 
[1] "0.3 - 64.5 (11.9)" "0.8 - 66.0 (19.8)" "0.7 - 66.1 (26.8)"
  [1] "subtype1" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
  [7] "subtype2" "subtype2" "subtype1" "subtype2" "subtype3" "subtype2"
 [13] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
 [19] "subtype2" "subtype3" "subtype1" "subtype2" "subtype2" "subtype2"
 [25] "subtype1" "subtype3" "subtype2" "subtype2" "subtype3" "subtype1"
 [31] "subtype2" "subtype1" "subtype3" "subtype3" "subtype2" "subtype2"
 [37] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype1"
 [43] "subtype2" "subtype3" "subtype2" "subtype1" "subtype3" "subtype3"
 [49] "subtype2" "subtype3" "subtype1" "subtype3" "subtype2" "subtype3"
 [55] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
 [61] "subtype3" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
 [67] "subtype3" "subtype1" "subtype2" "subtype3" "subtype1" "subtype3"
 [73] "subtype2" "subtype2" "subtype3" "subtype1" "subtype2" "subtype1"
 [79] "subtype2" "subtype3" "subtype2" "subtype1" "subtype2" "subtype3"
 [85] "subtype2" "subtype1" "subtype2" "subtype1" "subtype2" "subtype1"
 [91] "subtype3" "subtype3" "subtype3" "subtype2" "subtype2" "subtype2"
 [97] "subtype2" "subtype3" "subtype3" "subtype2" "subtype2" "subtype2"
[103] "subtype3" "subtype3" "subtype1" "subtype2" "subtype2" "subtype2"
[109] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[115] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[121] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[127] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[133] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[139] "subtype3" "subtype1" "subtype3" "subtype3" "subtype2" "subtype3"
[145] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[151] "subtype2" "subtype2" "subtype3" "subtype2" "subtype1" "subtype2"
[157] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype2"
[163] "subtype3" "subtype1" "subtype2" "subtype3" "subtype1" "subtype2"
[169] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[175] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[181] "subtype2" "subtype2" "subtype1" "subtype2" "subtype1" "subtype2"
[187] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
[193] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[199] "subtype2" "subtype2" "subtype1" "subtype3" "subtype2" "subtype1"
[205] "subtype2"
  [1] "subtype1" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
  [7] "subtype2" "subtype2" "subtype1" "subtype2" "subtype3" "subtype2"
 [13] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
 [19] "subtype2" "subtype3" "subtype1" "subtype2" "subtype2" "subtype2"
 [25] "subtype1" "subtype3" "subtype2" "subtype2" "subtype3" "subtype1"
 [31] "subtype2" "subtype1" "subtype3" "subtype3" "subtype2" "subtype2"
 [37] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype1"
 [43] "subtype2" "subtype3" "subtype2" "subtype1" "subtype3" "subtype3"
 [49] "subtype2" "subtype3" "subtype1" "subtype3" "subtype2" "subtype3"
 [55] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
 [61] "subtype3" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
 [67] "subtype3" "subtype1" "subtype2" "subtype3" "subtype1" "subtype3"
 [73] "subtype2" "subtype2" "subtype3" "subtype1" "subtype2" "subtype1"
 [79] "subtype2" "subtype3" "subtype2" "subtype1" "subtype2" "subtype3"
 [85] "subtype2" "subtype1" "subtype2" "subtype1" "subtype2" "subtype1"
 [91] "subtype3" "subtype3" "subtype3" "subtype2" "subtype2" "subtype2"
 [97] "subtype2" "subtype3" "subtype3" "subtype2" "subtype2" "subtype2"
[103] "subtype3" "subtype3" "subtype1" "subtype2" "subtype2" "subtype2"
[109] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[115] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[121] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[127] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[133] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[139] "subtype3" "subtype1" "subtype3" "subtype3" "subtype2" "subtype3"
[145] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[151] "subtype2" "subtype2" "subtype3" "subtype2" "subtype1" "subtype2"
[157] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype2"
[163] "subtype3" "subtype1" "subtype2" "subtype3" "subtype1" "subtype2"
[169] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[175] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[181] "subtype2" "subtype2" "subtype1" "subtype2" "subtype1" "subtype2"
[187] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
[193] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[199] "subtype2" "subtype2" "subtype1" "subtype3" "subtype2" "subtype1"
[205] "subtype2"
  [1] "subtype1" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
  [7] "subtype2" "subtype2" "subtype1" "subtype2" "subtype3" "subtype2"
 [13] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
 [19] "subtype2" "subtype3" "subtype1" "subtype2" "subtype2" "subtype2"
 [25] "subtype1" "subtype3" "subtype2" "subtype2" "subtype3" "subtype1"
 [31] "subtype2" "subtype1" "subtype3" "subtype3" "subtype2" "subtype2"
 [37] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype1"
 [43] "subtype2" "subtype3" "subtype2" "subtype1" "subtype3" "subtype3"
 [49] "subtype2" "subtype3" "subtype1" "subtype3" "subtype2" "subtype3"
 [55] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
 [61] "subtype3" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
 [67] "subtype3" "subtype1" "subtype2" "subtype3" "subtype1" "subtype3"
 [73] "subtype2" "subtype2" "subtype3" "subtype1" "subtype2" "subtype1"
 [79] "subtype2" "subtype3" "subtype2" "subtype1" "subtype2" "subtype3"
 [85] "subtype2" "subtype1" "subtype2" "subtype1" "subtype2" "subtype1"
 [91] "subtype3" "subtype3" "subtype3" "subtype2" "subtype2" "subtype2"
 [97] "subtype2" "subtype3" "subtype3" "subtype2" "subtype2" "subtype2"
[103] "subtype3" "subtype3" "subtype1" "subtype2" "subtype2" "subtype2"
[109] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[115] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[121] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[127] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[133] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[139] "subtype3" "subtype1" "subtype3" "subtype3" "subtype2" "subtype3"
[145] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[151] "subtype2" "subtype2" "subtype3" "subtype2" "subtype1" "subtype2"
[157] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype2"
[163] "subtype3" "subtype1" "subtype2" "subtype3" "subtype1" "subtype2"
[169] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[175] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[181] "subtype2" "subtype2" "subtype1" "subtype2" "subtype1" "subtype2"
[187] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
[193] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[199] "subtype2" "subtype2" "subtype1" "subtype3" "subtype2" "subtype1"
[205] "subtype2"
D1V2, continuous
          vv
clus       T2 T3 T4
  subtype1 18 12  0
  subtype2 61 51  3
  subtype3 13 43  2
D1V3, multiclass
D1V4, binary
          cls
clus        0  1
  subtype1 24  2
  subtype2 89  2
  subtype3 42 13
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   24    2
  subtype2   89    2
  subtype3   42   13
   clus
vv  subtype1 subtype2 subtype3
  0       24       89       42
  1        2        2       13
          vv
clus       R0 R1 RX
  subtype1 21  8  1
  subtype2 91 18  3
  subtype3 40 12  1
D1V5, multiclass
D1V6, continuous
D1V7, continuous
D1V8, continuous
D1V9, continuous
D1V10, continuous
D1V11, continuous
D1V12, continuous
D1V13, continuous
D1V14, continuous

Clustering(2) Variable = METHLYATION_CNMF
D2V1, survival
          sevent
clus2       0  1
  subtype1 59  0
  subtype2 71  0
  subtype3 75  1
subtype1 subtype2 subtype3 
      59       71       76 
subtype1 subtype2 subtype3 
       0        0        1 
$subtype1
TCGA-CH-5737 TCGA-CH-5748 TCGA-CH-5751 TCGA-CH-5761 TCGA-CH-5767 TCGA-CH-5772 
        2.99         1.02        35.01         0.92        15.06        15.98 
TCGA-CH-5792 TCGA-EJ-5494 TCGA-EJ-5504 TCGA-EJ-5509 TCGA-EJ-5514 TCGA-EJ-5518 
        2.99        27.16        28.93        36.23        36.23        52.27 
TCGA-EJ-5519 TCGA-EJ-5532 TCGA-EJ-7115 TCGA-EJ-7123 TCGA-EJ-7125 TCGA-EJ-7315 
       43.92        47.87        27.02        49.02        61.15         9.50 
TCGA-EJ-7317 TCGA-EJ-7330 TCGA-EJ-7331 TCGA-EJ-7782 TCGA-EJ-7786 TCGA-EJ-7789 
        9.37         6.28         0.30         2.10        14.53        18.15 
TCGA-EJ-7794 TCGA-EJ-8468 TCGA-EJ-8470 TCGA-FC-7961 TCGA-FC-A4JI TCGA-FC-A5OB 
       23.05        64.47        26.99        15.42        13.45         8.98 
TCGA-FC-A6HD TCGA-G9-6333 TCGA-G9-6338 TCGA-G9-6343 TCGA-G9-6369 TCGA-G9-6371 
        1.78        65.95        65.98        18.21        39.95        40.31 
TCGA-G9-6494 TCGA-G9-6496 TCGA-G9-6498 TCGA-G9-6499 TCGA-G9-7510 TCGA-G9-7521 
       58.22        56.75        52.87        50.73        38.96        30.97 
TCGA-G9-7523 TCGA-HC-7075 TCGA-HC-7078 TCGA-HC-7080 TCGA-HC-7211 TCGA-HC-7736 
       28.18        19.76         5.33         2.01         0.79         0.72 
TCGA-HC-7737 TCGA-HC-8265 TCGA-HC-A4ZV TCGA-HC-A6AL TCGA-HC-A6AO TCGA-HC-A6AP 
        2.10        15.88         0.76         2.20         5.49         2.33 
TCGA-HI-7168 TCGA-M7-A721 TCGA-M7-A724 TCGA-QU-A6IL TCGA-QU-A6IM 
       65.92         6.71        15.88         3.19        41.00 

$subtype2
TCGA-CH-5738 TCGA-CH-5743 TCGA-CH-5746 TCGA-CH-5762 TCGA-CH-5763 TCGA-CH-5771 
        6.97        13.97        24.03        44.02        12.00        13.02 
TCGA-CH-5789 TCGA-EJ-5497 TCGA-EJ-5498 TCGA-EJ-5501 TCGA-EJ-5502 TCGA-EJ-5503 
        9.99        13.32        29.79        30.81         8.05        23.54 
TCGA-EJ-5505 TCGA-EJ-5506 TCGA-EJ-5508 TCGA-EJ-5510 TCGA-EJ-5512 TCGA-EJ-5515 
       30.31        27.19        38.93        36.69        38.53        40.77 
TCGA-EJ-5516 TCGA-EJ-5517 TCGA-EJ-5527 TCGA-EJ-5531 TCGA-EJ-7328 TCGA-EJ-7781 
       46.55        47.80        39.75        30.28         5.59         5.56 
TCGA-EJ-7785 TCGA-EJ-7791 TCGA-EJ-7792 TCGA-EJ-7793 TCGA-EJ-7797 TCGA-EJ-A46B 
       20.55        19.59        17.29         1.41        12.13         5.33 
TCGA-EJ-A46D TCGA-EJ-A46E TCGA-EJ-A46H TCGA-EJ-A46I TCGA-FC-7708 TCGA-FC-A66V 
        4.24        17.49         7.53        21.96        28.41        17.23 
TCGA-G9-6329 TCGA-G9-6336 TCGA-G9-6347 TCGA-G9-6348 TCGA-G9-6351 TCGA-G9-6353 
       41.62        65.98        56.48        49.81        46.16        50.70 
TCGA-G9-6356 TCGA-G9-6366 TCGA-G9-6367 TCGA-G9-6370 TCGA-G9-6378 TCGA-G9-6379 
       47.15         3.32        40.18        38.01        37.97        45.80 
TCGA-G9-6384 TCGA-G9-6385 TCGA-G9-7519 TCGA-G9-7522 TCGA-H9-A6BX TCGA-HC-7079 
       25.15        27.29        27.91        21.30        18.74         2.93 
TCGA-HC-7233 TCGA-HC-7740 TCGA-HC-7742 TCGA-HC-7747 TCGA-HC-7750 TCGA-HC-7817 
        1.71         1.74         1.48         1.87         1.12         1.05 
TCGA-HC-8216 TCGA-HC-A6AQ TCGA-HC-A6AS TCGA-HC-A6HX TCGA-HI-7170 TCGA-J4-8200 
       22.42         3.48         1.45         1.25        62.43        12.30 
TCGA-J4-A67M TCGA-J4-A67O TCGA-M7-A71Y TCGA-M7-A720 TCGA-QU-A6IP 
       16.04        16.14         5.19         9.93        65.88 

$subtype3
TCGA-CH-5739 TCGA-CH-5740 TCGA-CH-5741 TCGA-CH-5744 TCGA-CH-5745 TCGA-CH-5750 
       22.06         1.02        12.99         1.97         2.99        13.02 
TCGA-CH-5752 TCGA-CH-5753 TCGA-CH-5754 TCGA-CH-5764 TCGA-CH-5765 TCGA-CH-5766 
       31.00         1.02         2.04         1.02        23.01         1.02 
TCGA-CH-5768 TCGA-CH-5769 TCGA-CH-5788 TCGA-CH-5790 TCGA-CH-5791 TCGA-CH-5794 
       24.03         2.04        26.99        32.02        33.01        29.00 
TCGA-EJ-5495 TCGA-EJ-5496 TCGA-EJ-5499 TCGA-EJ-5507 TCGA-EJ-5511 TCGA-EJ-5521 
       33.11        19.56        17.52        23.90        32.02        51.88 
TCGA-EJ-5522 TCGA-EJ-5524 TCGA-EJ-5525 TCGA-EJ-5526 TCGA-EJ-5530 TCGA-EJ-5542 
       48.07        43.07        36.66        38.76        41.82        29.06 
TCGA-EJ-7314 TCGA-EJ-7321 TCGA-EJ-7327 TCGA-EJ-7783 TCGA-EJ-7784 TCGA-EJ-7788 
        9.70         7.66         5.75         4.31         5.49         1.71 
TCGA-EJ-8469 TCGA-EJ-8472 TCGA-EJ-8474 TCGA-EJ-A46F TCGA-EJ-A46G TCGA-G9-6332 
       63.98        66.12        10.32         9.83         3.06        65.92 
TCGA-G9-6339 TCGA-G9-6342 TCGA-G9-6354 TCGA-G9-6361 TCGA-G9-6362 TCGA-G9-6363 
       65.98        55.76        49.35        46.52        47.44        45.30 
TCGA-G9-6364 TCGA-G9-6365 TCGA-G9-6373 TCGA-G9-6377 TCGA-G9-7525 TCGA-H9-7775 
       39.39        44.81        26.66        31.50        32.68         6.08 
TCGA-H9-A6BY TCGA-HC-7077 TCGA-HC-7209 TCGA-HC-7212 TCGA-HC-7213 TCGA-HC-7230 
        3.68        65.98         1.35        28.60         1.97         1.68 
TCGA-HC-7231 TCGA-HC-7744 TCGA-HC-7748 TCGA-HC-7749 TCGA-HC-7752 TCGA-HC-7818 
        2.37         1.68        26.04         1.97         3.22         1.48 
TCGA-HC-7821 TCGA-HC-A48F TCGA-HC-A632 TCGA-HC-A6HY TCGA-HI-7169 TCGA-HI-7171 
        1.84         1.51         2.01         4.41        64.08        66.02 
TCGA-J4-8198 TCGA-J4-A67N TCGA-J4-A83K TCGA-M7-A71Z 
       20.19        16.54         6.77         6.87 

subtype1 subtype2 subtype3 
    0.30     1.05     1.02 
subtype1 subtype2 subtype3 
   65.98    65.98    66.12 
subtype1 subtype2 subtype3 
  18.150   20.550   19.875 
[1] "0.3 - 66.0 (18.1)" "1.1 - 66.0 (20.6)" "1.0 - 66.1 (19.9)"
  [1] "subtype1" "subtype2" "subtype3" "subtype3" "subtype3" "subtype2"
  [7] "subtype3" "subtype3" "subtype2" "subtype1" "subtype3" "subtype1"
 [13] "subtype3" "subtype3" "subtype3" "subtype1" "subtype2" "subtype2"
 [19] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
 [25] "subtype2" "subtype1" "subtype3" "subtype2" "subtype3" "subtype3"
 [31] "subtype1" "subtype3" "subtype1" "subtype3" "subtype3" "subtype2"
 [37] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype1"
 [43] "subtype2" "subtype2" "subtype3" "subtype2" "subtype1" "subtype2"
 [49] "subtype3" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
 [55] "subtype1" "subtype1" "subtype3" "subtype3" "subtype3" "subtype3"
 [61] "subtype3" "subtype2" "subtype3" "subtype2" "subtype1" "subtype3"
 [67] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype1"
 [73] "subtype3" "subtype3" "subtype2" "subtype1" "subtype1" "subtype2"
 [79] "subtype1" "subtype3" "subtype3" "subtype2" "subtype1" "subtype3"
 [85] "subtype1" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
 [91] "subtype1" "subtype3" "subtype1" "subtype3" "subtype3" "subtype2"
 [97] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
[103] "subtype2" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
[109] "subtype2" "subtype3" "subtype1" "subtype2" "subtype1" "subtype3"
[115] "subtype3" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
[121] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
[127] "subtype3" "subtype2" "subtype2" "subtype1" "subtype2" "subtype1"
[133] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[139] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
[145] "subtype1" "subtype2" "subtype1" "subtype3" "subtype3" "subtype2"
[151] "subtype3" "subtype1" "subtype3" "subtype1" "subtype2" "subtype1"
[157] "subtype3" "subtype1" "subtype3" "subtype3" "subtype3" "subtype3"
[163] "subtype2" "subtype1" "subtype1" "subtype2" "subtype2" "subtype3"
[169] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype2"
[175] "subtype3" "subtype3" "subtype2" "subtype1" "subtype3" "subtype1"
[181] "subtype3" "subtype1" "subtype1" "subtype1" "subtype2" "subtype2"
[187] "subtype2" "subtype3" "subtype1" "subtype3" "subtype2" "subtype3"
[193] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype3"
[199] "subtype2" "subtype3" "subtype2" "subtype1" "subtype1" "subtype1"
[205] "subtype1" "subtype2"
  [1] "subtype1" "subtype2" "subtype3" "subtype3" "subtype3" "subtype2"
  [7] "subtype3" "subtype3" "subtype2" "subtype1" "subtype3" "subtype1"
 [13] "subtype3" "subtype3" "subtype3" "subtype1" "subtype2" "subtype2"
 [19] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
 [25] "subtype2" "subtype1" "subtype3" "subtype2" "subtype3" "subtype3"
 [31] "subtype1" "subtype3" "subtype1" "subtype3" "subtype3" "subtype2"
 [37] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype1"
 [43] "subtype2" "subtype2" "subtype3" "subtype2" "subtype1" "subtype2"
 [49] "subtype3" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
 [55] "subtype1" "subtype1" "subtype3" "subtype3" "subtype3" "subtype3"
 [61] "subtype3" "subtype2" "subtype3" "subtype2" "subtype1" "subtype3"
 [67] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype1"
 [73] "subtype3" "subtype3" "subtype2" "subtype1" "subtype1" "subtype2"
 [79] "subtype1" "subtype3" "subtype3" "subtype2" "subtype1" "subtype3"
 [85] "subtype1" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
 [91] "subtype1" "subtype3" "subtype1" "subtype3" "subtype3" "subtype2"
 [97] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
[103] "subtype2" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
[109] "subtype2" "subtype3" "subtype1" "subtype2" "subtype1" "subtype3"
[115] "subtype3" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
[121] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
[127] "subtype3" "subtype2" "subtype2" "subtype1" "subtype2" "subtype1"
[133] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[139] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
[145] "subtype1" "subtype2" "subtype1" "subtype3" "subtype3" "subtype2"
[151] "subtype3" "subtype1" "subtype3" "subtype1" "subtype2" "subtype1"
[157] "subtype3" "subtype1" "subtype3" "subtype3" "subtype3" "subtype3"
[163] "subtype2" "subtype1" "subtype1" "subtype2" "subtype2" "subtype3"
[169] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype2"
[175] "subtype3" "subtype3" "subtype2" "subtype1" "subtype3" "subtype1"
[181] "subtype3" "subtype1" "subtype1" "subtype1" "subtype2" "subtype2"
[187] "subtype2" "subtype3" "subtype1" "subtype3" "subtype2" "subtype3"
[193] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype3"
[199] "subtype2" "subtype3" "subtype2" "subtype1" "subtype1" "subtype1"
[205] "subtype1" "subtype2"
  [1] "subtype1" "subtype2" "subtype3" "subtype3" "subtype3" "subtype2"
  [7] "subtype3" "subtype3" "subtype2" "subtype1" "subtype3" "subtype1"
 [13] "subtype3" "subtype3" "subtype3" "subtype1" "subtype2" "subtype2"
 [19] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
 [25] "subtype2" "subtype1" "subtype3" "subtype2" "subtype3" "subtype3"
 [31] "subtype1" "subtype3" "subtype1" "subtype3" "subtype3" "subtype2"
 [37] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype1"
 [43] "subtype2" "subtype2" "subtype3" "subtype2" "subtype1" "subtype2"
 [49] "subtype3" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
 [55] "subtype1" "subtype1" "subtype3" "subtype3" "subtype3" "subtype3"
 [61] "subtype3" "subtype2" "subtype3" "subtype2" "subtype1" "subtype3"
 [67] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype1"
 [73] "subtype3" "subtype3" "subtype2" "subtype1" "subtype1" "subtype2"
 [79] "subtype1" "subtype3" "subtype3" "subtype2" "subtype1" "subtype3"
 [85] "subtype1" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
 [91] "subtype1" "subtype3" "subtype1" "subtype3" "subtype3" "subtype2"
 [97] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
[103] "subtype2" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
[109] "subtype2" "subtype3" "subtype1" "subtype2" "subtype1" "subtype3"
[115] "subtype3" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
[121] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
[127] "subtype3" "subtype2" "subtype2" "subtype1" "subtype2" "subtype1"
[133] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[139] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
[145] "subtype1" "subtype2" "subtype1" "subtype3" "subtype3" "subtype2"
[151] "subtype3" "subtype1" "subtype3" "subtype1" "subtype2" "subtype1"
[157] "subtype3" "subtype1" "subtype3" "subtype3" "subtype3" "subtype3"
[163] "subtype2" "subtype1" "subtype1" "subtype2" "subtype2" "subtype3"
[169] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype2"
[175] "subtype3" "subtype3" "subtype2" "subtype1" "subtype3" "subtype1"
[181] "subtype3" "subtype1" "subtype1" "subtype1" "subtype2" "subtype2"
[187] "subtype2" "subtype3" "subtype1" "subtype3" "subtype2" "subtype3"
[193] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype3"
[199] "subtype2" "subtype3" "subtype2" "subtype1" "subtype1" "subtype1"
[205] "subtype1" "subtype2"
D2V2, continuous
          vv
clus       T2 T3 T4
  subtype1 28 28  3
  subtype2 40 29  0
  subtype3 24 50  2
D2V3, multiclass
D2V4, binary
          cls
clus        0  1
  subtype1 46  5
  subtype2 54  1
  subtype3 56 11
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   46    5
  subtype2   54    1
  subtype3   56   11
   clus
vv  subtype1 subtype2 subtype3
  0       46       54       56
  1        5        1       11
          vv
clus       R0 R1 RX
  subtype1 38 17  1
  subtype2 56 10  2
  subtype3 59 11  2
D2V5, multiclass
D2V6, continuous
D2V7, continuous
D2V8, continuous
D2V9, continuous
D2V10, continuous
D2V11, continuous
D2V12, continuous
D2V13, continuous
D2V14, continuous

Clustering(3) Variable = RPPA_CNMF
D3V1, survival
          sevent
clus2       0  1
  subtype1 42  0
  subtype2 50  0
  subtype3 53  1
subtype1 subtype2 subtype3 
      42       50       54 
subtype1 subtype2 subtype3 
       0        0        1 
$subtype1
TCGA-CH-5737 TCGA-CH-5739 TCGA-CH-5740 TCGA-CH-5743 TCGA-CH-5744 TCGA-CH-5745 
        2.99        22.06         1.02        13.97         1.97         2.99 
TCGA-CH-5748 TCGA-CH-5750 TCGA-CH-5753 TCGA-CH-5762 TCGA-CH-5763 TCGA-CH-5767 
        1.02        13.02         1.02        44.02        12.00        15.06 
TCGA-CH-5768 TCGA-CH-5789 TCGA-CH-5790 TCGA-CH-5791 TCGA-CH-5794 TCGA-EJ-5495 
       24.03         9.99        32.02        33.01        29.00        33.11 
TCGA-EJ-5496 TCGA-EJ-5497 TCGA-EJ-5502 TCGA-EJ-5504 TCGA-EJ-5505 TCGA-EJ-5506 
       19.56        13.32         8.05        28.93        30.31        27.19 
TCGA-EJ-5508 TCGA-EJ-5509 TCGA-EJ-5515 TCGA-EJ-5516 TCGA-EJ-5517 TCGA-EJ-5524 
       38.93        36.23        40.77        46.55        47.80        43.07 
TCGA-EJ-5527 TCGA-EJ-5532 TCGA-EJ-5542 TCGA-EJ-7330 TCGA-EJ-7783 TCGA-EJ-7785 
       39.75        47.87        29.06         6.28         4.31        20.55 
TCGA-EJ-7786 TCGA-EJ-7791 TCGA-EJ-8468 TCGA-EJ-A46E TCGA-HC-7736 TCGA-HC-7748 
       14.53        19.59        64.47        17.49         0.72        26.04 

$subtype2
TCGA-CH-5738 TCGA-CH-5764 TCGA-CH-5771 TCGA-CH-5772 TCGA-EJ-5498 TCGA-EJ-5499 
        6.97         1.02        13.02        15.98        29.79        17.52 
TCGA-EJ-5501 TCGA-EJ-5503 TCGA-EJ-5510 TCGA-EJ-5511 TCGA-EJ-5512 TCGA-EJ-7115 
       30.81        23.54        36.69        32.02        38.53        27.02 
TCGA-EJ-7125 TCGA-EJ-7314 TCGA-EJ-7315 TCGA-EJ-7317 TCGA-EJ-7328 TCGA-EJ-7331 
       61.15         9.70         9.50         9.37         5.59         0.30 
TCGA-EJ-7781 TCGA-EJ-7792 TCGA-EJ-7793 TCGA-EJ-7794 TCGA-EJ-7797 TCGA-EJ-8470 
        5.56        17.29         1.41        23.05        12.13        26.99 
TCGA-EJ-A46B TCGA-EJ-A46D TCGA-EJ-A46F TCGA-FC-7708 TCGA-G9-6329 TCGA-G9-6342 
        5.33         4.24         9.83        28.41        41.62        55.76 
TCGA-G9-6343 TCGA-G9-6351 TCGA-G9-6353 TCGA-G9-6364 TCGA-G9-6367 TCGA-G9-6370 
       18.21        46.16        50.70        39.39        40.18        38.01 
TCGA-G9-6371 TCGA-G9-6384 TCGA-G9-6494 TCGA-G9-6499 TCGA-G9-7522 TCGA-G9-7523 
       40.31        25.15        58.22        50.73        21.30        28.18 
TCGA-H9-7775 TCGA-HC-7079 TCGA-HC-7233 TCGA-HC-7740 TCGA-HI-7168 TCGA-HI-7169 
        6.08         2.93         1.71         1.74        65.92        64.08 
TCGA-HI-7170 TCGA-J4-8200 
       62.43        12.30 

$subtype3
TCGA-CH-5741 TCGA-CH-5751 TCGA-CH-5752 TCGA-CH-5754 TCGA-CH-5761 TCGA-CH-5765 
       12.99        35.01        31.00         2.04         0.92        23.01 
TCGA-CH-5766 TCGA-CH-5769 TCGA-CH-5788 TCGA-CH-5792 TCGA-EJ-5494 TCGA-EJ-5507 
        1.02         2.04        26.99         2.99        27.16        23.90 
TCGA-EJ-5514 TCGA-EJ-5518 TCGA-EJ-5519 TCGA-EJ-5521 TCGA-EJ-5522 TCGA-EJ-5525 
       36.23        52.27        43.92        51.88        48.07        36.66 
TCGA-EJ-5526 TCGA-EJ-5530 TCGA-EJ-5531 TCGA-EJ-7321 TCGA-EJ-7782 TCGA-EJ-7784 
       38.76        41.82        30.28         7.66         2.10         5.49 
TCGA-EJ-7788 TCGA-EJ-7789 TCGA-EJ-8469 TCGA-EJ-8474 TCGA-EJ-A46G TCGA-FC-7961 
        1.71        18.15        63.98        10.32         3.06        15.42 
TCGA-FC-A4JI TCGA-FC-A5OB TCGA-G9-6338 TCGA-G9-6356 TCGA-G9-6361 TCGA-G9-6362 
       13.45         8.98        65.98        47.15        46.52        47.44 
TCGA-G9-6363 TCGA-G9-6365 TCGA-G9-6366 TCGA-G9-6373 TCGA-G9-6377 TCGA-G9-6378 
       45.30        44.81         3.32        26.66        31.50        37.97 
TCGA-G9-6496 TCGA-G9-7510 TCGA-G9-7521 TCGA-G9-7525 TCGA-HC-7077 TCGA-HC-7211 
       56.75        38.96        30.97        32.68        65.98         0.79 
TCGA-HC-7212 TCGA-HC-7213 TCGA-HC-7744 TCGA-HC-7817 TCGA-HI-7171 TCGA-J4-8198 
       28.60         1.97         1.68         1.05        66.02        20.19 

subtype1 subtype2 subtype3 
    0.72     0.30     0.79 
subtype1 subtype2 subtype3 
   64.47    65.92    66.02 
subtype1 subtype2 subtype3 
  21.305   23.295   27.880 
[1] "0.7 - 64.5 (21.3)" "0.3 - 65.9 (23.3)" "0.8 - 66.0 (27.9)"
  [1] "subtype1" "subtype2" "subtype1" "subtype1" "subtype3" "subtype1"
  [7] "subtype1" "subtype1" "subtype1" "subtype1" "subtype3" "subtype3"
 [13] "subtype1" "subtype3" "subtype3" "subtype1" "subtype1" "subtype2"
 [19] "subtype3" "subtype3" "subtype1" "subtype1" "subtype3" "subtype2"
 [25] "subtype2" "subtype3" "subtype1" "subtype1" "subtype1" "subtype3"
 [31] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype2"
 [37] "subtype2" "subtype2" "subtype1" "subtype2" "subtype1" "subtype1"
 [43] "subtype1" "subtype3" "subtype1" "subtype1" "subtype2" "subtype2"
 [49] "subtype2" "subtype3" "subtype1" "subtype1" "subtype1" "subtype3"
 [55] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
 [61] "subtype1" "subtype3" "subtype3" "subtype1" "subtype1" "subtype2"
 [67] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
 [73] "subtype1" "subtype2" "subtype2" "subtype3" "subtype1" "subtype3"
 [79] "subtype1" "subtype1" "subtype3" "subtype3" "subtype1" "subtype2"
 [85] "subtype2" "subtype2" "subtype2" "subtype1" "subtype3" "subtype2"
 [91] "subtype3" "subtype2" "subtype2" "subtype1" "subtype2" "subtype3"
 [97] "subtype2" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
[103] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
[109] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype2"
[115] "subtype2" "subtype2" "subtype3" "subtype3" "subtype3" "subtype2"
[121] "subtype2" "subtype3" "subtype2" "subtype3" "subtype3" "subtype2"
[127] "subtype2" "subtype3" "subtype2" "subtype3" "subtype2" "subtype3"
[133] "subtype3" "subtype3" "subtype2" "subtype1" "subtype2" "subtype3"
[139] "subtype1" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
[145] "subtype3" "subtype2"
  [1] "subtype1" "subtype2" "subtype1" "subtype1" "subtype3" "subtype1"
  [7] "subtype1" "subtype1" "subtype1" "subtype1" "subtype3" "subtype3"
 [13] "subtype1" "subtype3" "subtype3" "subtype1" "subtype1" "subtype2"
 [19] "subtype3" "subtype3" "subtype1" "subtype1" "subtype3" "subtype2"
 [25] "subtype2" "subtype3" "subtype1" "subtype1" "subtype1" "subtype3"
 [31] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype2"
 [37] "subtype2" "subtype2" "subtype1" "subtype2" "subtype1" "subtype1"
 [43] "subtype1" "subtype3" "subtype1" "subtype1" "subtype2" "subtype2"
 [49] "subtype2" "subtype3" "subtype1" "subtype1" "subtype1" "subtype3"
 [55] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
 [61] "subtype1" "subtype3" "subtype3" "subtype1" "subtype1" "subtype2"
 [67] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
 [73] "subtype1" "subtype2" "subtype2" "subtype3" "subtype1" "subtype3"
 [79] "subtype1" "subtype1" "subtype3" "subtype3" "subtype1" "subtype2"
 [85] "subtype2" "subtype2" "subtype2" "subtype1" "subtype3" "subtype2"
 [91] "subtype3" "subtype2" "subtype2" "subtype1" "subtype2" "subtype3"
 [97] "subtype2" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
[103] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
[109] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype2"
[115] "subtype2" "subtype2" "subtype3" "subtype3" "subtype3" "subtype2"
[121] "subtype2" "subtype3" "subtype2" "subtype3" "subtype3" "subtype2"
[127] "subtype2" "subtype3" "subtype2" "subtype3" "subtype2" "subtype3"
[133] "subtype3" "subtype3" "subtype2" "subtype1" "subtype2" "subtype3"
[139] "subtype1" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
[145] "subtype3" "subtype2"
  [1] "subtype1" "subtype2" "subtype1" "subtype1" "subtype3" "subtype1"
  [7] "subtype1" "subtype1" "subtype1" "subtype1" "subtype3" "subtype3"
 [13] "subtype1" "subtype3" "subtype3" "subtype1" "subtype1" "subtype2"
 [19] "subtype3" "subtype3" "subtype1" "subtype1" "subtype3" "subtype2"
 [25] "subtype2" "subtype3" "subtype1" "subtype1" "subtype1" "subtype3"
 [31] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype2"
 [37] "subtype2" "subtype2" "subtype1" "subtype2" "subtype1" "subtype1"
 [43] "subtype1" "subtype3" "subtype1" "subtype1" "subtype2" "subtype2"
 [49] "subtype2" "subtype3" "subtype1" "subtype1" "subtype1" "subtype3"
 [55] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
 [61] "subtype1" "subtype3" "subtype3" "subtype1" "subtype1" "subtype2"
 [67] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
 [73] "subtype1" "subtype2" "subtype2" "subtype3" "subtype1" "subtype3"
 [79] "subtype1" "subtype1" "subtype3" "subtype3" "subtype1" "subtype2"
 [85] "subtype2" "subtype2" "subtype2" "subtype1" "subtype3" "subtype2"
 [91] "subtype3" "subtype2" "subtype2" "subtype1" "subtype2" "subtype3"
 [97] "subtype2" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
[103] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
[109] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype2"
[115] "subtype2" "subtype2" "subtype3" "subtype3" "subtype3" "subtype2"
[121] "subtype2" "subtype3" "subtype2" "subtype3" "subtype3" "subtype2"
[127] "subtype2" "subtype3" "subtype2" "subtype3" "subtype2" "subtype3"
[133] "subtype3" "subtype3" "subtype2" "subtype1" "subtype2" "subtype3"
[139] "subtype1" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
[145] "subtype3" "subtype2"
D3V2, continuous
          vv
clus       T2 T3 T4
  subtype1 18 23  0
  subtype2 25 24  1
  subtype3 12 38  4
D3V3, multiclass
D3V4, binary
          cls
clus        0  1
  subtype1 38  4
  subtype2 40  1
  subtype3 38  9
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   38    4
  subtype2   40    1
  subtype3   38    9
   clus
vv  subtype1 subtype2 subtype3
  0       38       40       38
  1        4        1        9
          vv
clus       R0 R1 RX
  subtype1 36  4  1
  subtype2 37  9  1
  subtype3 33 16  1
D3V5, multiclass
D3V6, continuous
D3V7, continuous
D3V8, continuous
D3V9, continuous
D3V10, continuous
D3V11, continuous
D3V12, continuous
D3V13, continuous
D3V14, continuous

Clustering(4) Variable = RPPA_CHIERARCHICAL
D4V1, survival
          sevent
clus2       0  1
  subtype1 51  0
  subtype2 54  1
  subtype3 40  0
subtype1 subtype2 subtype3 
      51       55       40 
subtype1 subtype2 subtype3 
       0        1        0 
$subtype1
TCGA-CH-5737 TCGA-CH-5738 TCGA-CH-5739 TCGA-CH-5740 TCGA-CH-5743 TCGA-CH-5744 
        2.99         6.97        22.06         1.02        13.97         1.97 
TCGA-CH-5745 TCGA-CH-5748 TCGA-CH-5750 TCGA-CH-5753 TCGA-CH-5762 TCGA-CH-5763 
        2.99         1.02        13.02         1.02        44.02        12.00 
TCGA-CH-5764 TCGA-CH-5765 TCGA-CH-5766 TCGA-CH-5767 TCGA-CH-5768 TCGA-CH-5771 
        1.02        23.01         1.02        15.06        24.03        13.02 
TCGA-CH-5789 TCGA-CH-5790 TCGA-CH-5791 TCGA-CH-5794 TCGA-EJ-5495 TCGA-EJ-5496 
        9.99        32.02        33.01        29.00        33.11        19.56 
TCGA-EJ-5497 TCGA-EJ-5501 TCGA-EJ-5502 TCGA-EJ-5504 TCGA-EJ-5505 TCGA-EJ-5508 
       13.32        30.81         8.05        28.93        30.31        38.93 
TCGA-EJ-5509 TCGA-EJ-5512 TCGA-EJ-5515 TCGA-EJ-5516 TCGA-EJ-5517 TCGA-EJ-5524 
       36.23        38.53        40.77        46.55        47.80        43.07 
TCGA-EJ-5531 TCGA-EJ-5532 TCGA-EJ-7314 TCGA-EJ-7317 TCGA-EJ-7330 TCGA-EJ-7781 
       30.28        47.87         9.70         9.37         6.28         5.56 
TCGA-EJ-7783 TCGA-EJ-7785 TCGA-EJ-7786 TCGA-EJ-7791 TCGA-EJ-8468 TCGA-EJ-A46E 
        4.31        20.55        14.53        19.59        64.47        17.49 
TCGA-HC-7736 TCGA-HC-7740 TCGA-HC-7748 
        0.72         1.74        26.04 

$subtype2
TCGA-CH-5741 TCGA-CH-5751 TCGA-CH-5752 TCGA-CH-5754 TCGA-CH-5761 TCGA-CH-5769 
       12.99        35.01        31.00         2.04         0.92         2.04 
TCGA-CH-5788 TCGA-CH-5792 TCGA-EJ-5494 TCGA-EJ-5506 TCGA-EJ-5507 TCGA-EJ-5514 
       26.99         2.99        27.16        27.19        23.90        36.23 
TCGA-EJ-5518 TCGA-EJ-5519 TCGA-EJ-5521 TCGA-EJ-5522 TCGA-EJ-5525 TCGA-EJ-5526 
       52.27        43.92        51.88        48.07        36.66        38.76 
TCGA-EJ-5530 TCGA-EJ-7321 TCGA-EJ-7782 TCGA-EJ-7784 TCGA-EJ-7788 TCGA-EJ-7789 
       41.82         7.66         2.10         5.49         1.71        18.15 
TCGA-EJ-8469 TCGA-EJ-8470 TCGA-EJ-8474 TCGA-EJ-A46G TCGA-FC-A4JI TCGA-FC-A5OB 
       63.98        26.99        10.32         3.06        13.45         8.98 
TCGA-G9-6338 TCGA-G9-6343 TCGA-G9-6356 TCGA-G9-6361 TCGA-G9-6362 TCGA-G9-6363 
       65.98        18.21        47.15        46.52        47.44        45.30 
TCGA-G9-6365 TCGA-G9-6366 TCGA-G9-6373 TCGA-G9-6377 TCGA-G9-6378 TCGA-G9-6496 
       44.81         3.32        26.66        31.50        37.97        56.75 
TCGA-G9-7510 TCGA-G9-7521 TCGA-G9-7525 TCGA-H9-7775 TCGA-HC-7077 TCGA-HC-7079 
       38.96        30.97        32.68         6.08        65.98         2.93 
TCGA-HC-7211 TCGA-HC-7212 TCGA-HC-7213 TCGA-HC-7744 TCGA-HC-7817 TCGA-HI-7171 
        0.79        28.60         1.97         1.68         1.05        66.02 
TCGA-J4-8198 
       20.19 

$subtype3
TCGA-CH-5772 TCGA-EJ-5498 TCGA-EJ-5499 TCGA-EJ-5503 TCGA-EJ-5510 TCGA-EJ-5511 
       15.98        29.79        17.52        23.54        36.69        32.02 
TCGA-EJ-5527 TCGA-EJ-5542 TCGA-EJ-7115 TCGA-EJ-7125 TCGA-EJ-7315 TCGA-EJ-7328 
       39.75        29.06        27.02        61.15         9.50         5.59 
TCGA-EJ-7331 TCGA-EJ-7792 TCGA-EJ-7793 TCGA-EJ-7794 TCGA-EJ-7797 TCGA-EJ-A46B 
        0.30        17.29         1.41        23.05        12.13         5.33 
TCGA-EJ-A46D TCGA-EJ-A46F TCGA-FC-7708 TCGA-FC-7961 TCGA-G9-6329 TCGA-G9-6342 
        4.24         9.83        28.41        15.42        41.62        55.76 
TCGA-G9-6351 TCGA-G9-6353 TCGA-G9-6364 TCGA-G9-6367 TCGA-G9-6370 TCGA-G9-6371 
       46.16        50.70        39.39        40.18        38.01        40.31 
TCGA-G9-6384 TCGA-G9-6494 TCGA-G9-6499 TCGA-G9-7522 TCGA-G9-7523 TCGA-HC-7233 
       25.15        58.22        50.73        21.30        28.18         1.71 
TCGA-HI-7168 TCGA-HI-7169 TCGA-HI-7170 TCGA-J4-8200 
       65.92        64.08        62.43        12.30 

subtype1 subtype2 subtype3 
    0.72     0.79     0.30 
subtype1 subtype2 subtype3 
   64.47    66.02    65.92 
subtype1 subtype2 subtype3 
  17.490   27.160   28.295 
[1] "0.7 - 64.5 (17.5)" "0.8 - 66.0 (27.2)" "0.3 - 65.9 (28.3)"
  [1] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
  [7] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype2"
 [13] "subtype1" "subtype2" "subtype2" "subtype1" "subtype1" "subtype1"
 [19] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
 [25] "subtype3" "subtype2" "subtype1" "subtype1" "subtype1" "subtype2"
 [31] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype3"
 [37] "subtype3" "subtype1" "subtype1" "subtype3" "subtype1" "subtype1"
 [43] "subtype2" "subtype2" "subtype1" "subtype1" "subtype3" "subtype3"
 [49] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype2"
 [55] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
 [61] "subtype3" "subtype2" "subtype1" "subtype1" "subtype3" "subtype3"
 [67] "subtype3" "subtype1" "subtype3" "subtype1" "subtype2" "subtype3"
 [73] "subtype1" "subtype3" "subtype1" "subtype2" "subtype1" "subtype2"
 [79] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype3"
 [85] "subtype3" "subtype3" "subtype3" "subtype1" "subtype2" "subtype2"
 [91] "subtype2" "subtype3" "subtype3" "subtype1" "subtype3" "subtype2"
 [97] "subtype3" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
[103] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
[109] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
[115] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
[121] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
[127] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[133] "subtype2" "subtype2" "subtype3" "subtype1" "subtype1" "subtype2"
[139] "subtype1" "subtype2" "subtype3" "subtype3" "subtype3" "subtype2"
[145] "subtype2" "subtype3"
  [1] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
  [7] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype2"
 [13] "subtype1" "subtype2" "subtype2" "subtype1" "subtype1" "subtype1"
 [19] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
 [25] "subtype3" "subtype2" "subtype1" "subtype1" "subtype1" "subtype2"
 [31] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype3"
 [37] "subtype3" "subtype1" "subtype1" "subtype3" "subtype1" "subtype1"
 [43] "subtype2" "subtype2" "subtype1" "subtype1" "subtype3" "subtype3"
 [49] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype2"
 [55] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
 [61] "subtype3" "subtype2" "subtype1" "subtype1" "subtype3" "subtype3"
 [67] "subtype3" "subtype1" "subtype3" "subtype1" "subtype2" "subtype3"
 [73] "subtype1" "subtype3" "subtype1" "subtype2" "subtype1" "subtype2"
 [79] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype3"
 [85] "subtype3" "subtype3" "subtype3" "subtype1" "subtype2" "subtype2"
 [91] "subtype2" "subtype3" "subtype3" "subtype1" "subtype3" "subtype2"
 [97] "subtype3" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
[103] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
[109] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
[115] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
[121] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
[127] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[133] "subtype2" "subtype2" "subtype3" "subtype1" "subtype1" "subtype2"
[139] "subtype1" "subtype2" "subtype3" "subtype3" "subtype3" "subtype2"
[145] "subtype2" "subtype3"
  [1] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
  [7] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype2"
 [13] "subtype1" "subtype2" "subtype2" "subtype1" "subtype1" "subtype1"
 [19] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
 [25] "subtype3" "subtype2" "subtype1" "subtype1" "subtype1" "subtype2"
 [31] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype3"
 [37] "subtype3" "subtype1" "subtype1" "subtype3" "subtype1" "subtype1"
 [43] "subtype2" "subtype2" "subtype1" "subtype1" "subtype3" "subtype3"
 [49] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype2"
 [55] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
 [61] "subtype3" "subtype2" "subtype1" "subtype1" "subtype3" "subtype3"
 [67] "subtype3" "subtype1" "subtype3" "subtype1" "subtype2" "subtype3"
 [73] "subtype1" "subtype3" "subtype1" "subtype2" "subtype1" "subtype2"
 [79] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype3"
 [85] "subtype3" "subtype3" "subtype3" "subtype1" "subtype2" "subtype2"
 [91] "subtype2" "subtype3" "subtype3" "subtype1" "subtype3" "subtype2"
 [97] "subtype3" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
[103] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
[109] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
[115] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
[121] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
[127] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[133] "subtype2" "subtype2" "subtype3" "subtype1" "subtype1" "subtype2"
[139] "subtype1" "subtype2" "subtype3" "subtype3" "subtype3" "subtype2"
[145] "subtype2" "subtype3"
D4V2, continuous
          vv
clus       T2 T3 T4
  subtype1 24 26  0
  subtype2 15 36  4
  subtype3 16 23  1
D4V3, multiclass
D4V4, binary
          cls
clus        0  1
  subtype1 46  4
  subtype2 37  9
  subtype3 33  1
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   46    4
  subtype2   37    9
  subtype3   33    1
   clus
vv  subtype1 subtype2 subtype3
  0       46       37       33
  1        4        9        1
          vv
clus       R0 R1 RX
  subtype1 46  4  0
  subtype2 32 16  2
  subtype3 28  9  1
D4V5, multiclass
D4V6, continuous
D4V7, continuous
D4V8, continuous
D4V9, continuous
D4V10, continuous
D4V11, continuous
D4V12, continuous
D4V13, continuous
D4V14, continuous

Clustering(5) Variable = MRNASEQ_CNMF
D5V1, survival
          sevent
clus2       0  1
  subtype1 64  0
  subtype2 72  0
  subtype3 69  1
subtype1 subtype2 subtype3 
      64       72       70 
subtype1 subtype2 subtype3 
       0        0        1 
$subtype1
TCGA-CH-5737 TCGA-CH-5748 TCGA-CH-5767 TCGA-CH-5772 TCGA-CH-5788 TCGA-EJ-5494 
        2.99         1.02        15.06        15.98        26.99        27.16 
TCGA-EJ-5505 TCGA-EJ-5514 TCGA-EJ-5517 TCGA-EJ-5518 TCGA-EJ-5532 TCGA-EJ-7123 
       30.31        36.23        47.80        52.27        47.87        49.02 
TCGA-EJ-7125 TCGA-EJ-7317 TCGA-EJ-7786 TCGA-EJ-7789 TCGA-EJ-8468 TCGA-FC-7961 
       61.15         9.37        14.53        18.15        64.47        15.42 
TCGA-FC-A4JI TCGA-FC-A5OB TCGA-FC-A6HD TCGA-G9-6333 TCGA-G9-6338 TCGA-G9-6343 
       13.45         8.98         1.78        65.95        65.98        18.21 
TCGA-G9-6347 TCGA-G9-6354 TCGA-G9-6362 TCGA-G9-6366 TCGA-G9-6369 TCGA-G9-6371 
       56.48        49.35        47.44         3.32        39.95        40.31 
TCGA-G9-6378 TCGA-G9-6379 TCGA-G9-6494 TCGA-G9-6496 TCGA-G9-6498 TCGA-G9-6499 
       37.97        45.80        58.22        56.75        52.87        50.73 
TCGA-G9-7519 TCGA-G9-7521 TCGA-G9-7523 TCGA-H9-A6BY TCGA-HC-7075 TCGA-HC-7078 
       27.91        30.97        28.18         3.68        19.76         5.33 
TCGA-HC-7080 TCGA-HC-7742 TCGA-HC-7752 TCGA-HC-8216 TCGA-HC-8265 TCGA-HC-A4ZV 
        2.01         1.48         3.22        22.42        15.88         0.76 
TCGA-HC-A6AL TCGA-HC-A6AO TCGA-HC-A6AP TCGA-HC-A6AQ TCGA-HC-A6AS TCGA-HC-A6HX 
        2.20         5.49         2.33         3.48         1.45         1.25 
TCGA-HI-7168 TCGA-HI-7169 TCGA-J4-8200 TCGA-J4-A67M TCGA-J4-A67N TCGA-J4-A67O 
       65.92        64.08        12.30        16.04        16.54        16.14 
TCGA-M7-A721 TCGA-M7-A724 TCGA-QU-A6IL TCGA-QU-A6IM 
        6.71        15.88         3.19        41.00 

$subtype2
TCGA-CH-5738 TCGA-CH-5743 TCGA-CH-5745 TCGA-CH-5746 TCGA-CH-5762 TCGA-CH-5763 
        6.97        13.97         2.99        24.03        44.02        12.00 
TCGA-CH-5771 TCGA-CH-5789 TCGA-CH-5792 TCGA-EJ-5497 TCGA-EJ-5498 TCGA-EJ-5499 
       13.02         9.99         2.99        13.32        29.79        17.52 
TCGA-EJ-5501 TCGA-EJ-5502 TCGA-EJ-5503 TCGA-EJ-5506 TCGA-EJ-5508 TCGA-EJ-5509 
       30.81         8.05        23.54        27.19        38.93        36.23 
TCGA-EJ-5510 TCGA-EJ-5512 TCGA-EJ-5515 TCGA-EJ-5531 TCGA-EJ-7115 TCGA-EJ-7328 
       36.69        38.53        40.77        30.28        27.02         5.59 
TCGA-EJ-7330 TCGA-EJ-7331 TCGA-EJ-7781 TCGA-EJ-7783 TCGA-EJ-7785 TCGA-EJ-7791 
        6.28         0.30         5.56         4.31        20.55        19.59 
TCGA-EJ-7792 TCGA-EJ-7793 TCGA-EJ-7794 TCGA-EJ-7797 TCGA-EJ-8470 TCGA-EJ-A46B 
       17.29         1.41        23.05        12.13        26.99         5.33 
TCGA-EJ-A46D TCGA-EJ-A46E TCGA-EJ-A46H TCGA-EJ-A46I TCGA-FC-7708 TCGA-FC-A66V 
        4.24        17.49         7.53        21.96        28.41        17.23 
TCGA-G9-6329 TCGA-G9-6336 TCGA-G9-6339 TCGA-G9-6348 TCGA-G9-6351 TCGA-G9-6353 
       41.62        65.98        65.98        49.81        46.16        50.70 
TCGA-G9-6356 TCGA-G9-6365 TCGA-G9-6367 TCGA-G9-6370 TCGA-G9-6384 TCGA-G9-6385 
       47.15        44.81        40.18        38.01        25.15        27.29 
TCGA-G9-7510 TCGA-G9-7522 TCGA-H9-A6BX TCGA-HC-7079 TCGA-HC-7211 TCGA-HC-7233 
       38.96        21.30        18.74         2.93         0.79         1.71 
TCGA-HC-7736 TCGA-HC-7737 TCGA-HC-7740 TCGA-HC-7747 TCGA-HC-7750 TCGA-HC-7817 
        0.72         2.10         1.74         1.87         1.12         1.05 
TCGA-HC-7818 TCGA-HI-7170 TCGA-J4-A83K TCGA-M7-A71Y TCGA-M7-A720 TCGA-QU-A6IP 
        1.48        62.43         6.77         5.19         9.93        65.88 

$subtype3
TCGA-CH-5739 TCGA-CH-5740 TCGA-CH-5741 TCGA-CH-5744 TCGA-CH-5750 TCGA-CH-5751 
       22.06         1.02        12.99         1.97        13.02        35.01 
TCGA-CH-5752 TCGA-CH-5753 TCGA-CH-5754 TCGA-CH-5761 TCGA-CH-5764 TCGA-CH-5765 
       31.00         1.02         2.04         0.92         1.02        23.01 
TCGA-CH-5766 TCGA-CH-5768 TCGA-CH-5769 TCGA-CH-5790 TCGA-CH-5791 TCGA-CH-5794 
        1.02        24.03         2.04        32.02        33.01        29.00 
TCGA-EJ-5495 TCGA-EJ-5496 TCGA-EJ-5504 TCGA-EJ-5507 TCGA-EJ-5511 TCGA-EJ-5516 
       33.11        19.56        28.93        23.90        32.02        46.55 
TCGA-EJ-5519 TCGA-EJ-5521 TCGA-EJ-5522 TCGA-EJ-5524 TCGA-EJ-5525 TCGA-EJ-5526 
       43.92        51.88        48.07        43.07        36.66        38.76 
TCGA-EJ-5527 TCGA-EJ-5530 TCGA-EJ-5542 TCGA-EJ-7314 TCGA-EJ-7315 TCGA-EJ-7321 
       39.75        41.82        29.06         9.70         9.50         7.66 
TCGA-EJ-7327 TCGA-EJ-7782 TCGA-EJ-7784 TCGA-EJ-7788 TCGA-EJ-8469 TCGA-EJ-8472 
        5.75         2.10         5.49         1.71        63.98        66.12 
TCGA-EJ-8474 TCGA-EJ-A46F TCGA-EJ-A46G TCGA-G9-6332 TCGA-G9-6342 TCGA-G9-6361 
       10.32         9.83         3.06        65.92        55.76        46.52 
TCGA-G9-6363 TCGA-G9-6364 TCGA-G9-6373 TCGA-G9-6377 TCGA-G9-7525 TCGA-H9-7775 
       45.30        39.39        26.66        31.50        32.68         6.08 
TCGA-HC-7077 TCGA-HC-7209 TCGA-HC-7212 TCGA-HC-7213 TCGA-HC-7230 TCGA-HC-7231 
       65.98         1.35        28.60         1.97         1.68         2.37 
TCGA-HC-7744 TCGA-HC-7748 TCGA-HC-7749 TCGA-HC-7821 TCGA-HC-A48F TCGA-HC-A632 
        1.68        26.04         1.97         1.84         1.51         2.01 
TCGA-HC-A6HY TCGA-HI-7171 TCGA-J4-8198 TCGA-M7-A71Z 
        4.41        66.02        20.19         6.87 

subtype1 subtype2 subtype3 
    0.76     0.30     0.92 
subtype1 subtype2 subtype3 
   65.98    65.98    66.12 
subtype1 subtype2 subtype3 
  18.180   18.130   22.535 
[1] "0.8 - 66.0 (18.2)" "0.3 - 66.0 (18.1)" "0.9 - 66.1 (22.5)"
  [1] "subtype1" "subtype2" "subtype3" "subtype3" "subtype3" "subtype2"
  [7] "subtype3" "subtype2" "subtype2" "subtype1" "subtype3" "subtype3"
 [13] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
 [19] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
 [25] "subtype2" "subtype1" "subtype1" "subtype2" "subtype3" "subtype3"
 [31] "subtype2" "subtype3" "subtype1" "subtype3" "subtype3" "subtype2"
 [37] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
 [43] "subtype1" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
 [49] "subtype3" "subtype2" "subtype1" "subtype2" "subtype3" "subtype1"
 [55] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
 [61] "subtype3" "subtype3" "subtype3" "subtype2" "subtype1" "subtype3"
 [67] "subtype2" "subtype1" "subtype1" "subtype3" "subtype3" "subtype1"
 [73] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
 [79] "subtype3" "subtype2" "subtype3" "subtype2" "subtype1" "subtype3"
 [85] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [91] "subtype1" "subtype3" "subtype2" "subtype3" "subtype3" "subtype2"
 [97] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
[103] "subtype2" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
[109] "subtype2" "subtype3" "subtype1" "subtype2" "subtype1" "subtype2"
[115] "subtype3" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
[121] "subtype1" "subtype2" "subtype3" "subtype1" "subtype3" "subtype3"
[127] "subtype2" "subtype1" "subtype2" "subtype1" "subtype2" "subtype1"
[133] "subtype3" "subtype3" "subtype1" "subtype1" "subtype2" "subtype2"
[139] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
[145] "subtype1" "subtype2" "subtype1" "subtype3" "subtype3" "subtype2"
[151] "subtype1" "subtype1" "subtype3" "subtype1" "subtype2" "subtype1"
[157] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
[163] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype3"
[169] "subtype2" "subtype3" "subtype3" "subtype2" "subtype1" "subtype2"
[175] "subtype2" "subtype3" "subtype1" "subtype1" "subtype3" "subtype1"
[181] "subtype3" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[187] "subtype1" "subtype3" "subtype1" "subtype1" "subtype2" "subtype3"
[193] "subtype3" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
[199] "subtype2" "subtype3" "subtype2" "subtype1" "subtype1" "subtype1"
[205] "subtype1" "subtype2"
  [1] "subtype1" "subtype2" "subtype3" "subtype3" "subtype3" "subtype2"
  [7] "subtype3" "subtype2" "subtype2" "subtype1" "subtype3" "subtype3"
 [13] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
 [19] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
 [25] "subtype2" "subtype1" "subtype1" "subtype2" "subtype3" "subtype3"
 [31] "subtype2" "subtype3" "subtype1" "subtype3" "subtype3" "subtype2"
 [37] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
 [43] "subtype1" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
 [49] "subtype3" "subtype2" "subtype1" "subtype2" "subtype3" "subtype1"
 [55] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
 [61] "subtype3" "subtype3" "subtype3" "subtype2" "subtype1" "subtype3"
 [67] "subtype2" "subtype1" "subtype1" "subtype3" "subtype3" "subtype1"
 [73] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
 [79] "subtype3" "subtype2" "subtype3" "subtype2" "subtype1" "subtype3"
 [85] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [91] "subtype1" "subtype3" "subtype2" "subtype3" "subtype3" "subtype2"
 [97] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
[103] "subtype2" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
[109] "subtype2" "subtype3" "subtype1" "subtype2" "subtype1" "subtype2"
[115] "subtype3" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
[121] "subtype1" "subtype2" "subtype3" "subtype1" "subtype3" "subtype3"
[127] "subtype2" "subtype1" "subtype2" "subtype1" "subtype2" "subtype1"
[133] "subtype3" "subtype3" "subtype1" "subtype1" "subtype2" "subtype2"
[139] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
[145] "subtype1" "subtype2" "subtype1" "subtype3" "subtype3" "subtype2"
[151] "subtype1" "subtype1" "subtype3" "subtype1" "subtype2" "subtype1"
[157] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
[163] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype3"
[169] "subtype2" "subtype3" "subtype3" "subtype2" "subtype1" "subtype2"
[175] "subtype2" "subtype3" "subtype1" "subtype1" "subtype3" "subtype1"
[181] "subtype3" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[187] "subtype1" "subtype3" "subtype1" "subtype1" "subtype2" "subtype3"
[193] "subtype3" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
[199] "subtype2" "subtype3" "subtype2" "subtype1" "subtype1" "subtype1"
[205] "subtype1" "subtype2"
  [1] "subtype1" "subtype2" "subtype3" "subtype3" "subtype3" "subtype2"
  [7] "subtype3" "subtype2" "subtype2" "subtype1" "subtype3" "subtype3"
 [13] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
 [19] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
 [25] "subtype2" "subtype1" "subtype1" "subtype2" "subtype3" "subtype3"
 [31] "subtype2" "subtype3" "subtype1" "subtype3" "subtype3" "subtype2"
 [37] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
 [43] "subtype1" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
 [49] "subtype3" "subtype2" "subtype1" "subtype2" "subtype3" "subtype1"
 [55] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
 [61] "subtype3" "subtype3" "subtype3" "subtype2" "subtype1" "subtype3"
 [67] "subtype2" "subtype1" "subtype1" "subtype3" "subtype3" "subtype1"
 [73] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
 [79] "subtype3" "subtype2" "subtype3" "subtype2" "subtype1" "subtype3"
 [85] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [91] "subtype1" "subtype3" "subtype2" "subtype3" "subtype3" "subtype2"
 [97] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
[103] "subtype2" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
[109] "subtype2" "subtype3" "subtype1" "subtype2" "subtype1" "subtype2"
[115] "subtype3" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
[121] "subtype1" "subtype2" "subtype3" "subtype1" "subtype3" "subtype3"
[127] "subtype2" "subtype1" "subtype2" "subtype1" "subtype2" "subtype1"
[133] "subtype3" "subtype3" "subtype1" "subtype1" "subtype2" "subtype2"
[139] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
[145] "subtype1" "subtype2" "subtype1" "subtype3" "subtype3" "subtype2"
[151] "subtype1" "subtype1" "subtype3" "subtype1" "subtype2" "subtype1"
[157] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
[163] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype3"
[169] "subtype2" "subtype3" "subtype3" "subtype2" "subtype1" "subtype2"
[175] "subtype2" "subtype3" "subtype1" "subtype1" "subtype3" "subtype1"
[181] "subtype3" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[187] "subtype1" "subtype3" "subtype1" "subtype1" "subtype2" "subtype3"
[193] "subtype3" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
[199] "subtype2" "subtype3" "subtype2" "subtype1" "subtype1" "subtype1"
[205] "subtype1" "subtype2"
D5V2, continuous
          vv
clus       T2 T3 T4
  subtype1 32 30  2
  subtype2 39 30  1
  subtype3 21 47  2
D5V3, multiclass
D5V4, binary
          cls
clus        0  1
  subtype1 48  2
  subtype2 58  2
  subtype3 50 13
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   48    2
  subtype2   58    2
  subtype3   50   13
   clus
vv  subtype1 subtype2 subtype3
  0       48       58       50
  1        2        2       13
          vv
clus       R0 R1 RX
  subtype1 44 17  2
  subtype2 54 11  2
  subtype3 55 10  1
D5V5, multiclass
D5V6, continuous
D5V7, continuous
D5V8, continuous
D5V9, continuous
D5V10, continuous
D5V11, continuous
D5V12, continuous
D5V13, continuous
D5V14, continuous

Clustering(6) Variable = MRNASEQ_CHIERARCHICAL
D6V1, survival
          sevent
clus2       0  1
  subtype1 60  0
  subtype2 76  0
  subtype3 69  1
subtype1 subtype2 subtype3 
      60       76       70 
subtype1 subtype2 subtype3 
       0        0        1 
$subtype1
TCGA-CH-5737 TCGA-CH-5748 TCGA-CH-5767 TCGA-CH-5772 TCGA-CH-5788 TCGA-EJ-5494 
        2.99         1.02        15.06        15.98        26.99        27.16 
TCGA-EJ-5505 TCGA-EJ-5509 TCGA-EJ-5517 TCGA-EJ-5532 TCGA-EJ-7115 TCGA-EJ-7123 
       30.31        36.23        47.80        47.87        27.02        49.02 
TCGA-EJ-7125 TCGA-EJ-7317 TCGA-EJ-7786 TCGA-EJ-7789 TCGA-EJ-7792 TCGA-EJ-8468 
       61.15         9.37        14.53        18.15        17.29        64.47 
TCGA-FC-7961 TCGA-FC-A4JI TCGA-FC-A5OB TCGA-FC-A66V TCGA-FC-A6HD TCGA-G9-6333 
       15.42        13.45         8.98        17.23         1.78        65.95 
TCGA-G9-6338 TCGA-G9-6343 TCGA-G9-6347 TCGA-G9-6369 TCGA-G9-6371 TCGA-G9-6378 
       65.98        18.21        56.48        39.95        40.31        37.97 
TCGA-G9-6379 TCGA-G9-6494 TCGA-G9-6496 TCGA-G9-6498 TCGA-G9-6499 TCGA-G9-7510 
       45.80        58.22        56.75        52.87        50.73        38.96 
TCGA-G9-7519 TCGA-G9-7523 TCGA-HC-7075 TCGA-HC-7078 TCGA-HC-7080 TCGA-HC-7737 
       27.91        28.18        19.76         5.33         2.01         2.10 
TCGA-HC-7750 TCGA-HC-7752 TCGA-HC-8216 TCGA-HC-8265 TCGA-HC-A6AL TCGA-HC-A6AO 
        1.12         3.22        22.42        15.88         2.20         5.49 
TCGA-HC-A6AP TCGA-HC-A6AQ TCGA-HC-A6AS TCGA-HC-A6HX TCGA-HI-7169 TCGA-J4-8200 
        2.33         3.48         1.45         1.25        64.08        12.30 
TCGA-J4-A67M TCGA-J4-A67O TCGA-M7-A721 TCGA-M7-A724 TCGA-QU-A6IL TCGA-QU-A6IM 
       16.04        16.14         6.71        15.88         3.19        41.00 

$subtype2
TCGA-CH-5738 TCGA-CH-5743 TCGA-CH-5745 TCGA-CH-5746 TCGA-CH-5762 TCGA-CH-5763 
        6.97        13.97         2.99        24.03        44.02        12.00 
TCGA-CH-5768 TCGA-CH-5771 TCGA-CH-5789 TCGA-CH-5792 TCGA-EJ-5495 TCGA-EJ-5496 
       24.03        13.02         9.99         2.99        33.11        19.56 
TCGA-EJ-5497 TCGA-EJ-5498 TCGA-EJ-5499 TCGA-EJ-5501 TCGA-EJ-5502 TCGA-EJ-5503 
       13.32        29.79        17.52        30.81         8.05        23.54 
TCGA-EJ-5506 TCGA-EJ-5508 TCGA-EJ-5510 TCGA-EJ-5512 TCGA-EJ-5515 TCGA-EJ-5516 
       27.19        38.93        36.69        38.53        40.77        46.55 
TCGA-EJ-5522 TCGA-EJ-5524 TCGA-EJ-5526 TCGA-EJ-5527 TCGA-EJ-5531 TCGA-EJ-5542 
       48.07        43.07        38.76        39.75        30.28        29.06 
TCGA-EJ-7314 TCGA-EJ-7327 TCGA-EJ-7328 TCGA-EJ-7330 TCGA-EJ-7331 TCGA-EJ-7781 
        9.70         5.75         5.59         6.28         0.30         5.56 
TCGA-EJ-7783 TCGA-EJ-7785 TCGA-EJ-7791 TCGA-EJ-7793 TCGA-EJ-7794 TCGA-EJ-7797 
        4.31        20.55        19.59         1.41        23.05        12.13 
TCGA-EJ-8470 TCGA-EJ-A46B TCGA-EJ-A46D TCGA-EJ-A46E TCGA-EJ-A46H TCGA-EJ-A46I 
       26.99         5.33         4.24        17.49         7.53        21.96 
TCGA-FC-7708 TCGA-G9-6329 TCGA-G9-6336 TCGA-G9-6339 TCGA-G9-6348 TCGA-G9-6351 
       28.41        41.62        65.98        65.98        49.81        46.16 
TCGA-G9-6353 TCGA-G9-6356 TCGA-G9-6367 TCGA-G9-6370 TCGA-G9-6377 TCGA-G9-6384 
       50.70        47.15        40.18        38.01        31.50        25.15 
TCGA-G9-6385 TCGA-G9-7522 TCGA-H9-A6BX TCGA-HC-7079 TCGA-HC-7211 TCGA-HC-7233 
       27.29        21.30        18.74         2.93         0.79         1.71 
TCGA-HC-7736 TCGA-HC-7740 TCGA-HC-7747 TCGA-HC-7748 TCGA-HC-7817 TCGA-HC-7818 
        0.72         1.74         1.87        26.04         1.05         1.48 
TCGA-HI-7170 TCGA-M7-A71Y TCGA-M7-A720 TCGA-QU-A6IP 
       62.43         5.19         9.93        65.88 

$subtype3
TCGA-CH-5739 TCGA-CH-5740 TCGA-CH-5741 TCGA-CH-5744 TCGA-CH-5750 TCGA-CH-5751 
       22.06         1.02        12.99         1.97        13.02        35.01 
TCGA-CH-5752 TCGA-CH-5753 TCGA-CH-5754 TCGA-CH-5761 TCGA-CH-5764 TCGA-CH-5765 
       31.00         1.02         2.04         0.92         1.02        23.01 
TCGA-CH-5766 TCGA-CH-5769 TCGA-CH-5790 TCGA-CH-5791 TCGA-CH-5794 TCGA-EJ-5504 
        1.02         2.04        32.02        33.01        29.00        28.93 
TCGA-EJ-5507 TCGA-EJ-5511 TCGA-EJ-5514 TCGA-EJ-5518 TCGA-EJ-5519 TCGA-EJ-5521 
       23.90        32.02        36.23        52.27        43.92        51.88 
TCGA-EJ-5525 TCGA-EJ-5530 TCGA-EJ-7315 TCGA-EJ-7321 TCGA-EJ-7782 TCGA-EJ-7784 
       36.66        41.82         9.50         7.66         2.10         5.49 
TCGA-EJ-7788 TCGA-EJ-8469 TCGA-EJ-8472 TCGA-EJ-8474 TCGA-EJ-A46F TCGA-EJ-A46G 
        1.71        63.98        66.12        10.32         9.83         3.06 
TCGA-G9-6332 TCGA-G9-6342 TCGA-G9-6354 TCGA-G9-6361 TCGA-G9-6362 TCGA-G9-6363 
       65.92        55.76        49.35        46.52        47.44        45.30 
TCGA-G9-6364 TCGA-G9-6365 TCGA-G9-6366 TCGA-G9-6373 TCGA-G9-7521 TCGA-G9-7525 
       39.39        44.81         3.32        26.66        30.97        32.68 
TCGA-H9-7775 TCGA-H9-A6BY TCGA-HC-7077 TCGA-HC-7209 TCGA-HC-7212 TCGA-HC-7213 
        6.08         3.68        65.98         1.35        28.60         1.97 
TCGA-HC-7230 TCGA-HC-7231 TCGA-HC-7742 TCGA-HC-7744 TCGA-HC-7749 TCGA-HC-7821 
        1.68         2.37         1.48         1.68         1.97         1.84 
TCGA-HC-A48F TCGA-HC-A4ZV TCGA-HC-A632 TCGA-HC-A6HY TCGA-HI-7168 TCGA-HI-7171 
        1.51         0.76         2.01         4.41        65.92        66.02 
TCGA-J4-8198 TCGA-J4-A67N TCGA-J4-A83K TCGA-M7-A71Z 
       20.19        16.54         6.77         6.87 

subtype1 subtype2 subtype3 
    1.02     0.30     0.76 
subtype1 subtype2 subtype3 
   65.98    65.98    66.12 
subtype1 subtype2 subtype3 
   17.72    21.63    14.78 
[1] "1.0 - 66.0 (17.7)" "0.3 - 66.0 (21.6)" "0.8 - 66.1 (14.8)"
  [1] "subtype1" "subtype2" "subtype3" "subtype3" "subtype3" "subtype2"
  [7] "subtype3" "subtype2" "subtype2" "subtype1" "subtype3" "subtype3"
 [13] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
 [19] "subtype3" "subtype3" "subtype3" "subtype1" "subtype2" "subtype3"
 [25] "subtype2" "subtype1" "subtype1" "subtype2" "subtype3" "subtype3"
 [31] "subtype2" "subtype3" "subtype1" "subtype2" "subtype2" "subtype2"
 [37] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
 [43] "subtype1" "subtype2" "subtype3" "subtype2" "subtype1" "subtype2"
 [49] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype1"
 [55] "subtype3" "subtype3" "subtype3" "subtype2" "subtype2" "subtype3"
 [61] "subtype2" "subtype2" "subtype3" "subtype2" "subtype1" "subtype2"
 [67] "subtype1" "subtype1" "subtype1" "subtype2" "subtype3" "subtype1"
 [73] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [79] "subtype3" "subtype2" "subtype3" "subtype2" "subtype1" "subtype3"
 [85] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
 [91] "subtype1" "subtype3" "subtype2" "subtype3" "subtype3" "subtype2"
 [97] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
[103] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[109] "subtype2" "subtype3" "subtype1" "subtype2" "subtype1" "subtype2"
[115] "subtype3" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
[121] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
[127] "subtype3" "subtype3" "subtype2" "subtype1" "subtype2" "subtype1"
[133] "subtype3" "subtype2" "subtype1" "subtype1" "subtype2" "subtype2"
[139] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[145] "subtype3" "subtype2" "subtype1" "subtype3" "subtype3" "subtype2"
[151] "subtype3" "subtype1" "subtype3" "subtype1" "subtype2" "subtype1"
[157] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
[163] "subtype2" "subtype2" "subtype1" "subtype2" "subtype3" "subtype3"
[169] "subtype2" "subtype2" "subtype3" "subtype1" "subtype1" "subtype2"
[175] "subtype2" "subtype3" "subtype1" "subtype1" "subtype3" "subtype3"
[181] "subtype3" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[187] "subtype1" "subtype3" "subtype3" "subtype1" "subtype2" "subtype3"
[193] "subtype3" "subtype1" "subtype1" "subtype3" "subtype1" "subtype3"
[199] "subtype2" "subtype3" "subtype2" "subtype1" "subtype1" "subtype1"
[205] "subtype1" "subtype2"
  [1] "subtype1" "subtype2" "subtype3" "subtype3" "subtype3" "subtype2"
  [7] "subtype3" "subtype2" "subtype2" "subtype1" "subtype3" "subtype3"
 [13] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
 [19] "subtype3" "subtype3" "subtype3" "subtype1" "subtype2" "subtype3"
 [25] "subtype2" "subtype1" "subtype1" "subtype2" "subtype3" "subtype3"
 [31] "subtype2" "subtype3" "subtype1" "subtype2" "subtype2" "subtype2"
 [37] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
 [43] "subtype1" "subtype2" "subtype3" "subtype2" "subtype1" "subtype2"
 [49] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype1"
 [55] "subtype3" "subtype3" "subtype3" "subtype2" "subtype2" "subtype3"
 [61] "subtype2" "subtype2" "subtype3" "subtype2" "subtype1" "subtype2"
 [67] "subtype1" "subtype1" "subtype1" "subtype2" "subtype3" "subtype1"
 [73] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [79] "subtype3" "subtype2" "subtype3" "subtype2" "subtype1" "subtype3"
 [85] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
 [91] "subtype1" "subtype3" "subtype2" "subtype3" "subtype3" "subtype2"
 [97] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
[103] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[109] "subtype2" "subtype3" "subtype1" "subtype2" "subtype1" "subtype2"
[115] "subtype3" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
[121] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
[127] "subtype3" "subtype3" "subtype2" "subtype1" "subtype2" "subtype1"
[133] "subtype3" "subtype2" "subtype1" "subtype1" "subtype2" "subtype2"
[139] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[145] "subtype3" "subtype2" "subtype1" "subtype3" "subtype3" "subtype2"
[151] "subtype3" "subtype1" "subtype3" "subtype1" "subtype2" "subtype1"
[157] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
[163] "subtype2" "subtype2" "subtype1" "subtype2" "subtype3" "subtype3"
[169] "subtype2" "subtype2" "subtype3" "subtype1" "subtype1" "subtype2"
[175] "subtype2" "subtype3" "subtype1" "subtype1" "subtype3" "subtype3"
[181] "subtype3" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[187] "subtype1" "subtype3" "subtype3" "subtype1" "subtype2" "subtype3"
[193] "subtype3" "subtype1" "subtype1" "subtype3" "subtype1" "subtype3"
[199] "subtype2" "subtype3" "subtype2" "subtype1" "subtype1" "subtype1"
[205] "subtype1" "subtype2"
  [1] "subtype1" "subtype2" "subtype3" "subtype3" "subtype3" "subtype2"
  [7] "subtype3" "subtype2" "subtype2" "subtype1" "subtype3" "subtype3"
 [13] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
 [19] "subtype3" "subtype3" "subtype3" "subtype1" "subtype2" "subtype3"
 [25] "subtype2" "subtype1" "subtype1" "subtype2" "subtype3" "subtype3"
 [31] "subtype2" "subtype3" "subtype1" "subtype2" "subtype2" "subtype2"
 [37] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
 [43] "subtype1" "subtype2" "subtype3" "subtype2" "subtype1" "subtype2"
 [49] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype1"
 [55] "subtype3" "subtype3" "subtype3" "subtype2" "subtype2" "subtype3"
 [61] "subtype2" "subtype2" "subtype3" "subtype2" "subtype1" "subtype2"
 [67] "subtype1" "subtype1" "subtype1" "subtype2" "subtype3" "subtype1"
 [73] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [79] "subtype3" "subtype2" "subtype3" "subtype2" "subtype1" "subtype3"
 [85] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
 [91] "subtype1" "subtype3" "subtype2" "subtype3" "subtype3" "subtype2"
 [97] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
[103] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[109] "subtype2" "subtype3" "subtype1" "subtype2" "subtype1" "subtype2"
[115] "subtype3" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
[121] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
[127] "subtype3" "subtype3" "subtype2" "subtype1" "subtype2" "subtype1"
[133] "subtype3" "subtype2" "subtype1" "subtype1" "subtype2" "subtype2"
[139] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[145] "subtype3" "subtype2" "subtype1" "subtype3" "subtype3" "subtype2"
[151] "subtype3" "subtype1" "subtype3" "subtype1" "subtype2" "subtype1"
[157] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
[163] "subtype2" "subtype2" "subtype1" "subtype2" "subtype3" "subtype3"
[169] "subtype2" "subtype2" "subtype3" "subtype1" "subtype1" "subtype2"
[175] "subtype2" "subtype3" "subtype1" "subtype1" "subtype3" "subtype3"
[181] "subtype3" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[187] "subtype1" "subtype3" "subtype3" "subtype1" "subtype2" "subtype3"
[193] "subtype3" "subtype1" "subtype1" "subtype3" "subtype1" "subtype3"
[199] "subtype2" "subtype3" "subtype2" "subtype1" "subtype1" "subtype1"
[205] "subtype1" "subtype2"
D6V2, continuous
          vv
clus       T2 T3 T4
  subtype1 34 25  1
  subtype2 38 36  0
  subtype3 20 46  4
D6V3, multiclass
D6V4, binary
          cls
clus        0  1
  subtype1 45  2
  subtype2 63  3
  subtype3 48 12
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   45    2
  subtype2   63    3
  subtype3   48   12
   clus
vv  subtype1 subtype2 subtype3
  0       45       63       48
  1        2        3       12
          vv
clus       R0 R1 RX
  subtype1 43 15  1
  subtype2 60  9  2
  subtype3 50 14  2
D6V5, multiclass
D6V6, continuous
D6V7, continuous
D6V8, continuous
D6V9, continuous
D6V10, continuous
D6V11, continuous
D6V12, continuous
D6V13, continuous
D6V14, continuous

Clustering(7) Variable = MIRSEQ_CNMF
D7V1, survival
          sevent
clus2       0  1
  subtype1 63  0
  subtype2 32  0
  subtype3 67  1
  subtype4 14  0
  subtype5 25  0
subtype1 subtype2 subtype3 subtype4 subtype5 
      63       32       68       14       25 
subtype1 subtype2 subtype3 subtype4 subtype5 
       0        0        1        0        0 
$subtype1
TCGA-CH-5737 TCGA-CH-5740 TCGA-CH-5741 TCGA-CH-5744 TCGA-CH-5745 TCGA-CH-5748 
        2.99         1.02        12.99         1.97         2.99         1.02 
TCGA-CH-5750 TCGA-CH-5752 TCGA-CH-5753 TCGA-CH-5754 TCGA-CH-5761 TCGA-CH-5762 
       13.02        31.00         1.02         2.04         0.92        44.02 
TCGA-CH-5764 TCGA-CH-5765 TCGA-CH-5766 TCGA-CH-5767 TCGA-CH-5768 TCGA-CH-5769 
        1.02        23.01         1.02        15.06        24.03         2.04 
TCGA-CH-5771 TCGA-CH-5788 TCGA-CH-5790 TCGA-CH-5791 TCGA-CH-5792 TCGA-CH-5794 
       13.02        26.99        32.02        33.01         2.99        29.00 
TCGA-EJ-5495 TCGA-EJ-5496 TCGA-EJ-5497 TCGA-EJ-5499 TCGA-EJ-5501 TCGA-EJ-5502 
       33.11        19.56        13.32        17.52        30.81         8.05 
TCGA-EJ-5504 TCGA-EJ-5505 TCGA-EJ-5507 TCGA-EJ-5509 TCGA-EJ-5510 TCGA-EJ-5511 
       28.93        30.31        23.90        36.23        36.69        32.02 
TCGA-EJ-5518 TCGA-EJ-5519 TCGA-EJ-5521 TCGA-EJ-5524 TCGA-EJ-5525 TCGA-EJ-5526 
       52.27        43.92        51.88        43.07        36.66        38.76 
TCGA-EJ-5530 TCGA-EJ-5532 TCGA-EJ-5542 TCGA-FC-A4JI TCGA-G9-6332 TCGA-G9-6348 
       41.82        47.87        29.06        13.45        65.92        49.81 
TCGA-G9-6356 TCGA-G9-6362 TCGA-G9-6363 TCGA-G9-6364 TCGA-G9-6367 TCGA-G9-6370 
       47.15        47.44        45.30        39.39        40.18        38.01 
TCGA-G9-6371 TCGA-G9-6373 TCGA-G9-6378 TCGA-G9-6384 TCGA-G9-6385 TCGA-G9-6494 
       40.31        26.66        37.97        25.15        27.29        58.22 
TCGA-G9-6496 TCGA-HC-7080 TCGA-HC-A48F 
       56.75         2.01         1.51 

$subtype2
TCGA-CH-5738 TCGA-CH-5743 TCGA-CH-5746 TCGA-CH-5763 TCGA-CH-5789 TCGA-EJ-5498 
        6.97        13.97        24.03        12.00         9.99        29.79 
TCGA-EJ-5503 TCGA-EJ-5506 TCGA-EJ-5508 TCGA-EJ-5512 TCGA-EJ-5515 TCGA-EJ-5516 
       23.54        27.19        38.93        38.53        40.77        46.55 
TCGA-EJ-5522 TCGA-EJ-5527 TCGA-EJ-5531 TCGA-EJ-7797 TCGA-EJ-8472 TCGA-EJ-A46B 
       48.07        39.75        30.28        12.13        66.12         5.33 
TCGA-EJ-A46D TCGA-EJ-A46E TCGA-EJ-A46I TCGA-FC-A66V TCGA-G9-6329 TCGA-G9-6336 
        4.24        17.49        21.96        17.23        41.62        65.98 
TCGA-G9-6339 TCGA-G9-6353 TCGA-G9-7522 TCGA-HC-7817 TCGA-HC-A6AP TCGA-HC-A6AQ 
       65.98        50.70        21.30         1.05         2.33         3.48 
TCGA-HC-A6HX TCGA-J4-A83K 
        1.25         6.77 

$subtype3
TCGA-CH-5739 TCGA-EJ-7115 TCGA-EJ-7123 TCGA-EJ-7125 TCGA-EJ-7314 TCGA-EJ-7315 
       22.06        27.02        49.02        61.15         9.70         9.50 
TCGA-EJ-7317 TCGA-EJ-7321 TCGA-EJ-7327 TCGA-EJ-7328 TCGA-EJ-7330 TCGA-EJ-7331 
        9.37         7.66         5.75         5.59         6.28         0.30 
TCGA-EJ-7781 TCGA-EJ-7782 TCGA-EJ-7783 TCGA-EJ-7784 TCGA-EJ-7785 TCGA-EJ-7786 
        5.56         2.10         4.31         5.49        20.55        14.53 
TCGA-EJ-7788 TCGA-EJ-7789 TCGA-EJ-7793 TCGA-EJ-7794 TCGA-EJ-8468 TCGA-EJ-8469 
        1.71        18.15         1.41        23.05        64.47        63.98 
TCGA-EJ-8470 TCGA-EJ-8474 TCGA-FC-7708 TCGA-G9-6333 TCGA-G9-6338 TCGA-G9-6342 
       26.99        10.32        28.41        65.95        65.98        55.76 
TCGA-G9-6343 TCGA-G9-6351 TCGA-G9-6361 TCGA-G9-6366 TCGA-G9-6369 TCGA-G9-6377 
       18.21        46.16        46.52         3.32        39.95        31.50 
TCGA-G9-6499 TCGA-G9-7510 TCGA-G9-7521 TCGA-G9-7525 TCGA-H9-7775 TCGA-HC-7075 
       50.73        38.96        30.97        32.68         6.08        19.76 
TCGA-HC-7077 TCGA-HC-7078 TCGA-HC-7079 TCGA-HC-7209 TCGA-HC-7211 TCGA-HC-7212 
       65.98         5.33         2.93         1.35         0.79        28.60 
TCGA-HC-7213 TCGA-HC-7230 TCGA-HC-7231 TCGA-HC-7233 TCGA-HC-7736 TCGA-HC-7737 
        1.97         1.68         2.37         1.71         0.72         2.10 
TCGA-HC-7742 TCGA-HC-7744 TCGA-HC-7747 TCGA-HC-7748 TCGA-HC-7749 TCGA-HC-7750 
        1.48         1.68         1.87        26.04         1.97         1.12 
TCGA-HC-7752 TCGA-HC-7818 TCGA-HC-7821 TCGA-HC-8265 TCGA-HI-7168 TCGA-HI-7170 
        3.22         1.48         1.84        15.88        65.92        62.43 
TCGA-HI-7171 TCGA-J4-8198 
       66.02        20.19 

$subtype4
TCGA-CH-5772 TCGA-EJ-5514 TCGA-EJ-5517 TCGA-EJ-7791 TCGA-EJ-7792 TCGA-EJ-A46H 
       15.98        36.23        47.80        19.59        17.29         7.53 
TCGA-G9-6347 TCGA-G9-6365 TCGA-G9-7519 TCGA-G9-7523 TCGA-H9-A6BX TCGA-HC-7740 
       56.48        44.81        27.91        28.18        18.74         1.74 
TCGA-HI-7169 TCGA-J4-A67O 
       64.08        16.14 

$subtype5
TCGA-EJ-5494 TCGA-EJ-A46F TCGA-EJ-A46G TCGA-FC-7961 TCGA-FC-A5OB TCGA-FC-A6HD 
       27.16         9.83         3.06        15.42         8.98         1.78 
TCGA-G9-6354 TCGA-G9-6379 TCGA-G9-6498 TCGA-H9-A6BY TCGA-HC-8216 TCGA-HC-A4ZV 
       49.35        45.80        52.87         3.68        22.42         0.76 
TCGA-HC-A632 TCGA-HC-A6AL TCGA-HC-A6AO TCGA-HC-A6AS TCGA-HC-A6HY TCGA-J4-8200 
        2.01         2.20         5.49         1.45         4.41        12.30 
TCGA-J4-A67M TCGA-J4-A67N TCGA-M7-A71Z TCGA-M7-A721 TCGA-QU-A6IL TCGA-QU-A6IM 
       16.04        16.54         6.87         6.71         3.19        41.00 
TCGA-QU-A6IP 
       65.88 

subtype1 subtype2 subtype3 subtype4 subtype5 
    0.92     1.05     0.30     1.74     0.76 
subtype1 subtype2 subtype3 subtype4 subtype5 
   65.92    66.12    66.02    64.08    65.88 
subtype1 subtype2 subtype3 subtype4 subtype5 
   29.00    22.75    10.01    23.75     8.98 
[1] "0.9 - 65.9 (29.0)" "1.1 - 66.1 (22.8)" "0.3 - 66.0 (10.0)"
[4] "1.7 - 64.1 (23.8)" "0.8 - 65.9 (9.0)" 
  [1] "subtype1" "subtype2" "subtype3" "subtype1" "subtype1" "subtype2"
  [7] "subtype1" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
 [13] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
 [19] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [25] "subtype4" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
 [31] "subtype1" "subtype5" "subtype1" "subtype1" "subtype1" "subtype2"
 [37] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype1"
 [43] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
 [49] "subtype2" "subtype4" "subtype2" "subtype2" "subtype4" "subtype1"
 [55] "subtype1" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
 [61] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype3"
 [67] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
 [73] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
 [79] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
 [85] "subtype4" "subtype4" "subtype3" "subtype3" "subtype2" "subtype3"
 [91] "subtype3" "subtype3" "subtype2" "subtype3" "subtype2" "subtype2"
 [97] "subtype2" "subtype5" "subtype5" "subtype4" "subtype2" "subtype3"
[103] "subtype5" "subtype1" "subtype5" "subtype2" "subtype5" "subtype2"
[109] "subtype1" "subtype3" "subtype2" "subtype3" "subtype2" "subtype3"
[115] "subtype3" "subtype4" "subtype1" "subtype3" "subtype2" "subtype5"
[121] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype4"
[127] "subtype3" "subtype1" "subtype3" "subtype1" "subtype1" "subtype1"
[133] "subtype3" "subtype1" "subtype5" "subtype1" "subtype1" "subtype1"
[139] "subtype1" "subtype5" "subtype3" "subtype3" "subtype4" "subtype3"
[145] "subtype2" "subtype4" "subtype3" "subtype3" "subtype4" "subtype5"
[151] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
[157] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[163] "subtype3" "subtype3" "subtype4" "subtype3" "subtype3" "subtype3"
[169] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
[175] "subtype3" "subtype5" "subtype3" "subtype1" "subtype5" "subtype5"
[181] "subtype5" "subtype5" "subtype2" "subtype2" "subtype5" "subtype2"
[187] "subtype5" "subtype3" "subtype4" "subtype3" "subtype3" "subtype3"
[193] "subtype5" "subtype5" "subtype5" "subtype4" "subtype2" "subtype5"
[199] "subtype5" "subtype5" "subtype5" "subtype5"
  [1] "subtype1" "subtype2" "subtype3" "subtype1" "subtype1" "subtype2"
  [7] "subtype1" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
 [13] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
 [19] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [25] "subtype4" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
 [31] "subtype1" "subtype5" "subtype1" "subtype1" "subtype1" "subtype2"
 [37] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype1"
 [43] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
 [49] "subtype2" "subtype4" "subtype2" "subtype2" "subtype4" "subtype1"
 [55] "subtype1" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
 [61] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype3"
 [67] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
 [73] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
 [79] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
 [85] "subtype4" "subtype4" "subtype3" "subtype3" "subtype2" "subtype3"
 [91] "subtype3" "subtype3" "subtype2" "subtype3" "subtype2" "subtype2"
 [97] "subtype2" "subtype5" "subtype5" "subtype4" "subtype2" "subtype3"
[103] "subtype5" "subtype1" "subtype5" "subtype2" "subtype5" "subtype2"
[109] "subtype1" "subtype3" "subtype2" "subtype3" "subtype2" "subtype3"
[115] "subtype3" "subtype4" "subtype1" "subtype3" "subtype2" "subtype5"
[121] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype4"
[127] "subtype3" "subtype1" "subtype3" "subtype1" "subtype1" "subtype1"
[133] "subtype3" "subtype1" "subtype5" "subtype1" "subtype1" "subtype1"
[139] "subtype1" "subtype5" "subtype3" "subtype3" "subtype4" "subtype3"
[145] "subtype2" "subtype4" "subtype3" "subtype3" "subtype4" "subtype5"
[151] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
[157] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[163] "subtype3" "subtype3" "subtype4" "subtype3" "subtype3" "subtype3"
[169] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
[175] "subtype3" "subtype5" "subtype3" "subtype1" "subtype5" "subtype5"
[181] "subtype5" "subtype5" "subtype2" "subtype2" "subtype5" "subtype2"
[187] "subtype5" "subtype3" "subtype4" "subtype3" "subtype3" "subtype3"
[193] "subtype5" "subtype5" "subtype5" "subtype4" "subtype2" "subtype5"
[199] "subtype5" "subtype5" "subtype5" "subtype5"
  [1] "subtype1" "subtype2" "subtype3" "subtype1" "subtype1" "subtype2"
  [7] "subtype1" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
 [13] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
 [19] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [25] "subtype4" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
 [31] "subtype1" "subtype5" "subtype1" "subtype1" "subtype1" "subtype2"
 [37] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype1"
 [43] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
 [49] "subtype2" "subtype4" "subtype2" "subtype2" "subtype4" "subtype1"
 [55] "subtype1" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
 [61] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype3"
 [67] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
 [73] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
 [79] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
 [85] "subtype4" "subtype4" "subtype3" "subtype3" "subtype2" "subtype3"
 [91] "subtype3" "subtype3" "subtype2" "subtype3" "subtype2" "subtype2"
 [97] "subtype2" "subtype5" "subtype5" "subtype4" "subtype2" "subtype3"
[103] "subtype5" "subtype1" "subtype5" "subtype2" "subtype5" "subtype2"
[109] "subtype1" "subtype3" "subtype2" "subtype3" "subtype2" "subtype3"
[115] "subtype3" "subtype4" "subtype1" "subtype3" "subtype2" "subtype5"
[121] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype4"
[127] "subtype3" "subtype1" "subtype3" "subtype1" "subtype1" "subtype1"
[133] "subtype3" "subtype1" "subtype5" "subtype1" "subtype1" "subtype1"
[139] "subtype1" "subtype5" "subtype3" "subtype3" "subtype4" "subtype3"
[145] "subtype2" "subtype4" "subtype3" "subtype3" "subtype4" "subtype5"
[151] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
[157] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[163] "subtype3" "subtype3" "subtype4" "subtype3" "subtype3" "subtype3"
[169] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
[175] "subtype3" "subtype5" "subtype3" "subtype1" "subtype5" "subtype5"
[181] "subtype5" "subtype5" "subtype2" "subtype2" "subtype5" "subtype2"
[187] "subtype5" "subtype3" "subtype4" "subtype3" "subtype3" "subtype3"
[193] "subtype5" "subtype5" "subtype5" "subtype4" "subtype2" "subtype5"
[199] "subtype5" "subtype5" "subtype5" "subtype5"
D7V2, continuous
          vv
clus       T2 T3 T4
  subtype1 23 37  3
  subtype2 14 16  0
  subtype3 33 35  0
  subtype4 10  3  1
  subtype5 10 15  0
D7V3, multiclass
D7V4, binary
          cls
clus        0  1
  subtype1 47 11
  subtype2 24  1
  subtype3 54  3
  subtype4 11  0
  subtype5 19  1
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   47   11
  subtype2   24    1
  subtype3   54    3
  subtype4   11    0
  subtype5   19    1
          vv
clus       R0 R1 RX
  subtype1 47 16  0
  subtype2 25  3  2
  subtype3 51  8  2
  subtype4 10  4  0
  subtype5 18  5  1
D7V5, multiclass
D7V6, continuous
D7V7, continuous
D7V8, continuous
D7V9, continuous
D7V10, continuous
D7V11, continuous
D7V12, continuous
D7V13, continuous
D7V14, continuous

Clustering(8) Variable = MIRSEQ_CHIERARCHICAL
D8V1, survival
          sevent
clus2       0  1
  subtype1 37  0
  subtype2 34  0
  subtype3 71  0
  subtype4 59  1
subtype1 subtype2 subtype3 subtype4 
      37       34       71       60 
subtype1 subtype2 subtype3 subtype4 
       0        0        0        1 
$subtype1
TCGA-CH-5772 TCGA-EJ-5502 TCGA-EJ-5504 TCGA-EJ-5511 TCGA-EJ-5514 TCGA-EJ-5517 
       15.98         8.05        28.93        32.02        36.23        47.80 
TCGA-EJ-5518 TCGA-EJ-5530 TCGA-EJ-5532 TCGA-EJ-7125 TCGA-EJ-7317 TCGA-EJ-7330 
       52.27        41.82        47.87        61.15         9.37         6.28 
TCGA-EJ-7331 TCGA-EJ-7786 TCGA-EJ-7788 TCGA-EJ-7791 TCGA-EJ-7792 TCGA-G9-6338 
        0.30        14.53         1.71        19.59        17.29        65.98 
TCGA-G9-6342 TCGA-G9-6343 TCGA-G9-6347 TCGA-G9-6363 TCGA-G9-6365 TCGA-G9-6378 
       55.76        18.21        56.48        45.30        44.81        37.97 
TCGA-G9-6385 TCGA-G9-6494 TCGA-G9-7519 TCGA-G9-7521 TCGA-G9-7523 TCGA-H9-7775 
       27.29        58.22        27.91        30.97        28.18         6.08 
TCGA-HC-7075 TCGA-HC-7740 TCGA-HC-7750 TCGA-HI-7169 TCGA-HI-7170 TCGA-J4-8200 
       19.76         1.74         1.12        64.08        62.43        12.30 
TCGA-J4-A67O 
       16.14 

$subtype2
TCGA-CH-5750 TCGA-CH-5752 TCGA-CH-5753 TCGA-CH-5754 TCGA-CH-5761 TCGA-CH-5765 
       13.02        31.00         1.02         2.04         0.92        23.01 
TCGA-CH-5768 TCGA-CH-5788 TCGA-CH-5790 TCGA-EJ-5494 TCGA-EJ-5525 TCGA-EJ-7789 
       24.03        26.99        32.02        27.16        36.66        18.15 
TCGA-EJ-A46F TCGA-EJ-A46G TCGA-FC-7961 TCGA-FC-A4JI TCGA-FC-A5OB TCGA-FC-A6HD 
        9.83         3.06        15.42        13.45         8.98         1.78 
TCGA-G9-6354 TCGA-G9-6379 TCGA-G9-6498 TCGA-H9-A6BY TCGA-HC-8216 TCGA-HC-A48F 
       49.35        45.80        52.87         3.68        22.42         1.51 
TCGA-HC-A4ZV TCGA-HC-A632 TCGA-HC-A6AL TCGA-HC-A6AO TCGA-HC-A6AQ TCGA-HC-A6HY 
        0.76         2.01         2.20         5.49         3.48         4.41 
TCGA-J4-A67N TCGA-M7-A71Z TCGA-M7-A721 TCGA-QU-A6IL 
       16.54         6.87         6.71         3.19 

$subtype3
TCGA-CH-5738 TCGA-CH-5740 TCGA-CH-5741 TCGA-CH-5743 TCGA-CH-5744 TCGA-CH-5745 
        6.97         1.02        12.99        13.97         1.97         2.99 
TCGA-CH-5746 TCGA-CH-5762 TCGA-CH-5763 TCGA-CH-5764 TCGA-CH-5766 TCGA-CH-5769 
       24.03        44.02        12.00         1.02         1.02         2.04 
TCGA-CH-5771 TCGA-CH-5789 TCGA-CH-5791 TCGA-CH-5792 TCGA-CH-5794 TCGA-EJ-5495 
       13.02         9.99        33.01         2.99        29.00        33.11 
TCGA-EJ-5496 TCGA-EJ-5497 TCGA-EJ-5498 TCGA-EJ-5499 TCGA-EJ-5501 TCGA-EJ-5503 
       19.56        13.32        29.79        17.52        30.81        23.54 
TCGA-EJ-5505 TCGA-EJ-5506 TCGA-EJ-5507 TCGA-EJ-5508 TCGA-EJ-5509 TCGA-EJ-5510 
       30.31        27.19        23.90        38.93        36.23        36.69 
TCGA-EJ-5512 TCGA-EJ-5515 TCGA-EJ-5516 TCGA-EJ-5519 TCGA-EJ-5521 TCGA-EJ-5522 
       38.53        40.77        46.55        43.92        51.88        48.07 
TCGA-EJ-5524 TCGA-EJ-5526 TCGA-EJ-5527 TCGA-EJ-5531 TCGA-EJ-5542 TCGA-EJ-7321 
       43.07        38.76        39.75        30.28        29.06         7.66 
TCGA-EJ-8472 TCGA-EJ-A46B TCGA-EJ-A46H TCGA-EJ-A46I TCGA-FC-A66V TCGA-G9-6329 
       66.12         5.33         7.53        21.96        17.23        41.62 
TCGA-G9-6332 TCGA-G9-6336 TCGA-G9-6339 TCGA-G9-6348 TCGA-G9-6356 TCGA-G9-6362 
       65.92        65.98        65.98        49.81        47.15        47.44 
TCGA-G9-6364 TCGA-G9-6367 TCGA-G9-6369 TCGA-G9-6370 TCGA-G9-6371 TCGA-G9-6373 
       39.39        40.18        39.95        38.01        40.31        26.66 
TCGA-G9-6384 TCGA-G9-6496 TCGA-H9-A6BX TCGA-HC-7817 TCGA-HC-A6AP TCGA-HC-A6AS 
       25.15        56.75        18.74         1.05         2.33         1.45 
TCGA-HC-A6HX TCGA-J4-A67M TCGA-J4-A83K TCGA-QU-A6IM TCGA-QU-A6IP 
        1.25        16.04         6.77        41.00        65.88 

$subtype4
TCGA-CH-5737 TCGA-CH-5739 TCGA-CH-5748 TCGA-CH-5767 TCGA-EJ-7115 TCGA-EJ-7123 
        2.99        22.06         1.02        15.06        27.02        49.02 
TCGA-EJ-7314 TCGA-EJ-7315 TCGA-EJ-7327 TCGA-EJ-7328 TCGA-EJ-7781 TCGA-EJ-7782 
        9.70         9.50         5.75         5.59         5.56         2.10 
TCGA-EJ-7783 TCGA-EJ-7784 TCGA-EJ-7785 TCGA-EJ-7793 TCGA-EJ-7794 TCGA-EJ-7797 
        4.31         5.49        20.55         1.41        23.05        12.13 
TCGA-EJ-8468 TCGA-EJ-8469 TCGA-EJ-8470 TCGA-EJ-8474 TCGA-EJ-A46D TCGA-EJ-A46E 
       64.47        63.98        26.99        10.32         4.24        17.49 
TCGA-FC-7708 TCGA-G9-6333 TCGA-G9-6351 TCGA-G9-6353 TCGA-G9-6361 TCGA-G9-6366 
       28.41        65.95        46.16        50.70        46.52         3.32 
TCGA-G9-6377 TCGA-G9-6499 TCGA-G9-7510 TCGA-G9-7522 TCGA-G9-7525 TCGA-HC-7077 
       31.50        50.73        38.96        21.30        32.68        65.98 
TCGA-HC-7078 TCGA-HC-7079 TCGA-HC-7080 TCGA-HC-7209 TCGA-HC-7211 TCGA-HC-7212 
        5.33         2.93         2.01         1.35         0.79        28.60 
TCGA-HC-7213 TCGA-HC-7230 TCGA-HC-7231 TCGA-HC-7233 TCGA-HC-7736 TCGA-HC-7737 
        1.97         1.68         2.37         1.71         0.72         2.10 
TCGA-HC-7742 TCGA-HC-7744 TCGA-HC-7747 TCGA-HC-7748 TCGA-HC-7749 TCGA-HC-7752 
        1.48         1.68         1.87        26.04         1.97         3.22 
TCGA-HC-7818 TCGA-HC-7821 TCGA-HC-8265 TCGA-HI-7168 TCGA-HI-7171 TCGA-J4-8198 
        1.48         1.84        15.88        65.92        66.02        20.19 

subtype1 subtype2 subtype3 subtype4 
    0.30     0.76     1.02     0.72 
subtype1 subtype2 subtype3 subtype4 
   65.98    52.87    66.12    66.02 
subtype1 subtype2 subtype3 subtype4 
  28.180    9.405   29.060    9.600 
[1] "0.3 - 66.0 (28.2)" "0.8 - 52.9 (9.4)"  "1.0 - 66.1 (29.1)"
[4] "0.7 - 66.0 (9.6)" 
  [1] "subtype4" "subtype3" "subtype4" "subtype3" "subtype3" "subtype3"
  [7] "subtype3" "subtype3" "subtype3" "subtype4" "subtype2" "subtype2"
 [13] "subtype2" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
 [19] "subtype2" "subtype3" "subtype4" "subtype2" "subtype3" "subtype3"
 [25] "subtype1" "subtype2" "subtype3" "subtype2" "subtype3" "subtype3"
 [31] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
 [37] "subtype3" "subtype3" "subtype1" "subtype3" "subtype1" "subtype3"
 [43] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
 [49] "subtype3" "subtype1" "subtype3" "subtype3" "subtype1" "subtype1"
 [55] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
 [61] "subtype3" "subtype1" "subtype3" "subtype1" "subtype3" "subtype4"
 [67] "subtype4" "subtype1" "subtype4" "subtype4" "subtype1" "subtype3"
 [73] "subtype4" "subtype4" "subtype1" "subtype1" "subtype4" "subtype4"
 [79] "subtype4" "subtype4" "subtype4" "subtype1" "subtype1" "subtype2"
 [85] "subtype1" "subtype1" "subtype4" "subtype4" "subtype4" "subtype4"
 [91] "subtype4" "subtype4" "subtype3" "subtype4" "subtype3" "subtype4"
 [97] "subtype4" "subtype2" "subtype2" "subtype3" "subtype3" "subtype4"
[103] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype3"
[109] "subtype3" "subtype4" "subtype3" "subtype1" "subtype3" "subtype1"
[115] "subtype1" "subtype1" "subtype3" "subtype4" "subtype4" "subtype2"
[121] "subtype3" "subtype4" "subtype3" "subtype1" "subtype3" "subtype1"
[127] "subtype4" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[133] "subtype4" "subtype1" "subtype2" "subtype3" "subtype1" "subtype1"
[139] "subtype3" "subtype2" "subtype4" "subtype4" "subtype1" "subtype1"
[145] "subtype4" "subtype1" "subtype4" "subtype1" "subtype3" "subtype2"
[151] "subtype1" "subtype4" "subtype4" "subtype4" "subtype4" "subtype4"
[157] "subtype4" "subtype4" "subtype4" "subtype4" "subtype4" "subtype4"
[163] "subtype4" "subtype4" "subtype1" "subtype4" "subtype4" "subtype4"
[169] "subtype4" "subtype4" "subtype1" "subtype4" "subtype3" "subtype4"
[175] "subtype4" "subtype2" "subtype4" "subtype2" "subtype2" "subtype2"
[181] "subtype2" "subtype2" "subtype3" "subtype2" "subtype3" "subtype3"
[187] "subtype2" "subtype4" "subtype1" "subtype1" "subtype4" "subtype4"
[193] "subtype1" "subtype3" "subtype2" "subtype1" "subtype3" "subtype2"
[199] "subtype2" "subtype2" "subtype3" "subtype3"
  [1] "subtype4" "subtype3" "subtype4" "subtype3" "subtype3" "subtype3"
  [7] "subtype3" "subtype3" "subtype3" "subtype4" "subtype2" "subtype2"
 [13] "subtype2" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
 [19] "subtype2" "subtype3" "subtype4" "subtype2" "subtype3" "subtype3"
 [25] "subtype1" "subtype2" "subtype3" "subtype2" "subtype3" "subtype3"
 [31] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
 [37] "subtype3" "subtype3" "subtype1" "subtype3" "subtype1" "subtype3"
 [43] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
 [49] "subtype3" "subtype1" "subtype3" "subtype3" "subtype1" "subtype1"
 [55] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
 [61] "subtype3" "subtype1" "subtype3" "subtype1" "subtype3" "subtype4"
 [67] "subtype4" "subtype1" "subtype4" "subtype4" "subtype1" "subtype3"
 [73] "subtype4" "subtype4" "subtype1" "subtype1" "subtype4" "subtype4"
 [79] "subtype4" "subtype4" "subtype4" "subtype1" "subtype1" "subtype2"
 [85] "subtype1" "subtype1" "subtype4" "subtype4" "subtype4" "subtype4"
 [91] "subtype4" "subtype4" "subtype3" "subtype4" "subtype3" "subtype4"
 [97] "subtype4" "subtype2" "subtype2" "subtype3" "subtype3" "subtype4"
[103] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype3"
[109] "subtype3" "subtype4" "subtype3" "subtype1" "subtype3" "subtype1"
[115] "subtype1" "subtype1" "subtype3" "subtype4" "subtype4" "subtype2"
[121] "subtype3" "subtype4" "subtype3" "subtype1" "subtype3" "subtype1"
[127] "subtype4" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[133] "subtype4" "subtype1" "subtype2" "subtype3" "subtype1" "subtype1"
[139] "subtype3" "subtype2" "subtype4" "subtype4" "subtype1" "subtype1"
[145] "subtype4" "subtype1" "subtype4" "subtype1" "subtype3" "subtype2"
[151] "subtype1" "subtype4" "subtype4" "subtype4" "subtype4" "subtype4"
[157] "subtype4" "subtype4" "subtype4" "subtype4" "subtype4" "subtype4"
[163] "subtype4" "subtype4" "subtype1" "subtype4" "subtype4" "subtype4"
[169] "subtype4" "subtype4" "subtype1" "subtype4" "subtype3" "subtype4"
[175] "subtype4" "subtype2" "subtype4" "subtype2" "subtype2" "subtype2"
[181] "subtype2" "subtype2" "subtype3" "subtype2" "subtype3" "subtype3"
[187] "subtype2" "subtype4" "subtype1" "subtype1" "subtype4" "subtype4"
[193] "subtype1" "subtype3" "subtype2" "subtype1" "subtype3" "subtype2"
[199] "subtype2" "subtype2" "subtype3" "subtype3"
  [1] "subtype4" "subtype3" "subtype4" "subtype3" "subtype3" "subtype3"
  [7] "subtype3" "subtype3" "subtype3" "subtype4" "subtype2" "subtype2"
 [13] "subtype2" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
 [19] "subtype2" "subtype3" "subtype4" "subtype2" "subtype3" "subtype3"
 [25] "subtype1" "subtype2" "subtype3" "subtype2" "subtype3" "subtype3"
 [31] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
 [37] "subtype3" "subtype3" "subtype1" "subtype3" "subtype1" "subtype3"
 [43] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
 [49] "subtype3" "subtype1" "subtype3" "subtype3" "subtype1" "subtype1"
 [55] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
 [61] "subtype3" "subtype1" "subtype3" "subtype1" "subtype3" "subtype4"
 [67] "subtype4" "subtype1" "subtype4" "subtype4" "subtype1" "subtype3"
 [73] "subtype4" "subtype4" "subtype1" "subtype1" "subtype4" "subtype4"
 [79] "subtype4" "subtype4" "subtype4" "subtype1" "subtype1" "subtype2"
 [85] "subtype1" "subtype1" "subtype4" "subtype4" "subtype4" "subtype4"
 [91] "subtype4" "subtype4" "subtype3" "subtype4" "subtype3" "subtype4"
 [97] "subtype4" "subtype2" "subtype2" "subtype3" "subtype3" "subtype4"
[103] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype3"
[109] "subtype3" "subtype4" "subtype3" "subtype1" "subtype3" "subtype1"
[115] "subtype1" "subtype1" "subtype3" "subtype4" "subtype4" "subtype2"
[121] "subtype3" "subtype4" "subtype3" "subtype1" "subtype3" "subtype1"
[127] "subtype4" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[133] "subtype4" "subtype1" "subtype2" "subtype3" "subtype1" "subtype1"
[139] "subtype3" "subtype2" "subtype4" "subtype4" "subtype1" "subtype1"
[145] "subtype4" "subtype1" "subtype4" "subtype1" "subtype3" "subtype2"
[151] "subtype1" "subtype4" "subtype4" "subtype4" "subtype4" "subtype4"
[157] "subtype4" "subtype4" "subtype4" "subtype4" "subtype4" "subtype4"
[163] "subtype4" "subtype4" "subtype1" "subtype4" "subtype4" "subtype4"
[169] "subtype4" "subtype4" "subtype1" "subtype4" "subtype3" "subtype4"
[175] "subtype4" "subtype2" "subtype4" "subtype2" "subtype2" "subtype2"
[181] "subtype2" "subtype2" "subtype3" "subtype2" "subtype3" "subtype3"
[187] "subtype2" "subtype4" "subtype1" "subtype1" "subtype4" "subtype4"
[193] "subtype1" "subtype3" "subtype2" "subtype1" "subtype3" "subtype2"
[199] "subtype2" "subtype2" "subtype3" "subtype3"
D8V2, continuous
          vv
clus       T2 T3 T4
  subtype1 22 11  4
  subtype2 11 23  0
  subtype3 28 42  0
  subtype4 29 30  0
D8V3, multiclass
D8V4, binary
          cls
clus        0  1
  subtype1 26  2
  subtype2 22  5
  subtype3 56  7
  subtype4 51  2
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   26    2
  subtype2   22    5
  subtype3   56    7
  subtype4   51    2
   clus
vv  subtype1 subtype2 subtype3 subtype4
  0       26       22       56       51
  1        2        5        7        2
          vv
clus       R0 R1 RX
  subtype1 27  9  0
  subtype2 25  7  1
  subtype3 57 11  2
  subtype4 42  9  2
D8V5, multiclass
D8V6, continuous
D8V7, continuous
D8V8, continuous
D8V9, continuous
D8V10, continuous
D8V11, continuous
D8V12, continuous
D8V13, continuous
D8V14, continuous

Clustering(9) Variable = MIRSEQ_MATURE_CNMF
D9V1, survival
          sevent
clus2       0  1
  subtype1 80  0
  subtype2 12  0
  subtype3 72  1
  subtype4 26  0
  subtype5 11  0
subtype1 subtype2 subtype3 subtype4 subtype5 
      80       12       73       26       11 
subtype1 subtype2 subtype3 subtype4 subtype5 
       0        0        1        0        0 
$subtype1
TCGA-CH-5737 TCGA-CH-5738 TCGA-CH-5739 TCGA-CH-5740 TCGA-CH-5741 TCGA-CH-5743 
        2.99         6.97        22.06         1.02        12.99        13.97 
TCGA-CH-5744 TCGA-CH-5745 TCGA-CH-5746 TCGA-CH-5748 TCGA-CH-5750 TCGA-CH-5752 
        1.97         2.99        24.03         1.02        13.02        31.00 
TCGA-CH-5753 TCGA-CH-5754 TCGA-CH-5761 TCGA-CH-5762 TCGA-CH-5763 TCGA-CH-5764 
        1.02         2.04         0.92        44.02        12.00         1.02 
TCGA-CH-5765 TCGA-CH-5766 TCGA-CH-5767 TCGA-CH-5768 TCGA-CH-5769 TCGA-CH-5771 
       23.01         1.02        15.06        24.03         2.04        13.02 
TCGA-CH-5788 TCGA-CH-5789 TCGA-CH-5790 TCGA-CH-5791 TCGA-CH-5792 TCGA-CH-5794 
       26.99         9.99        32.02        33.01         2.99        29.00 
TCGA-EJ-5495 TCGA-EJ-5496 TCGA-EJ-5497 TCGA-EJ-5498 TCGA-EJ-5499 TCGA-EJ-5501 
       33.11        19.56        13.32        29.79        17.52        30.81 
TCGA-EJ-5502 TCGA-EJ-5503 TCGA-EJ-5504 TCGA-EJ-5505 TCGA-EJ-5506 TCGA-EJ-5507 
        8.05        23.54        28.93        30.31        27.19        23.90 
TCGA-EJ-5508 TCGA-EJ-5509 TCGA-EJ-5510 TCGA-EJ-5511 TCGA-EJ-5512 TCGA-EJ-5514 
       38.93        36.23        36.69        32.02        38.53        36.23 
TCGA-EJ-5515 TCGA-EJ-5516 TCGA-EJ-5517 TCGA-EJ-5518 TCGA-EJ-5519 TCGA-EJ-5521 
       40.77        46.55        47.80        52.27        43.92        51.88 
TCGA-EJ-5522 TCGA-EJ-5524 TCGA-EJ-5525 TCGA-EJ-5526 TCGA-EJ-5527 TCGA-EJ-5530 
       48.07        43.07        36.66        38.76        39.75        41.82 
TCGA-EJ-5531 TCGA-EJ-5532 TCGA-EJ-5542 TCGA-G9-6332 TCGA-G9-6336 TCGA-G9-6348 
       30.28        47.87        29.06        65.92        65.98        49.81 
TCGA-G9-6356 TCGA-G9-6362 TCGA-G9-6363 TCGA-G9-6364 TCGA-G9-6365 TCGA-G9-6367 
       47.15        47.44        45.30        39.39        44.81        40.18 
TCGA-G9-6370 TCGA-G9-6371 TCGA-G9-6373 TCGA-G9-6378 TCGA-G9-6384 TCGA-G9-6385 
       38.01        40.31        26.66        37.97        25.15        27.29 
TCGA-G9-6494 TCGA-G9-6496 
       58.22        56.75 

$subtype2
TCGA-CH-5772 TCGA-EJ-5494 TCGA-EJ-7791 TCGA-EJ-7792 TCGA-EJ-A46H TCGA-G9-6347 
       15.98        27.16        19.59        17.29         7.53        56.48 
TCGA-G9-7519 TCGA-G9-7523 TCGA-H9-A6BX TCGA-HC-7817 TCGA-J4-8200 TCGA-J4-A67O 
       27.91        28.18        18.74         1.05        12.30        16.14 

$subtype3
TCGA-EJ-7115 TCGA-EJ-7123 TCGA-EJ-7125 TCGA-EJ-7314 TCGA-EJ-7315 TCGA-EJ-7317 
       27.02        49.02        61.15         9.70         9.50         9.37 
TCGA-EJ-7321 TCGA-EJ-7327 TCGA-EJ-7328 TCGA-EJ-7330 TCGA-EJ-7331 TCGA-EJ-7781 
        7.66         5.75         5.59         6.28         0.30         5.56 
TCGA-EJ-7782 TCGA-EJ-7783 TCGA-EJ-7784 TCGA-EJ-7785 TCGA-EJ-7786 TCGA-EJ-7788 
        2.10         4.31         5.49        20.55        14.53         1.71 
TCGA-EJ-7789 TCGA-EJ-7793 TCGA-EJ-7794 TCGA-EJ-7797 TCGA-EJ-8468 TCGA-EJ-8469 
       18.15         1.41        23.05        12.13        64.47        63.98 
TCGA-EJ-8470 TCGA-EJ-8472 TCGA-EJ-8474 TCGA-FC-7708 TCGA-G9-6333 TCGA-G9-6338 
       26.99        66.12        10.32        28.41        65.95        65.98 
TCGA-G9-6342 TCGA-G9-6343 TCGA-G9-6351 TCGA-G9-6361 TCGA-G9-6366 TCGA-G9-6369 
       55.76        18.21        46.16        46.52         3.32        39.95 
TCGA-G9-6377 TCGA-G9-6499 TCGA-G9-7510 TCGA-G9-7521 TCGA-G9-7522 TCGA-G9-7525 
       31.50        50.73        38.96        30.97        21.30        32.68 
TCGA-H9-7775 TCGA-HC-7075 TCGA-HC-7077 TCGA-HC-7078 TCGA-HC-7079 TCGA-HC-7209 
        6.08        19.76        65.98         5.33         2.93         1.35 
TCGA-HC-7211 TCGA-HC-7212 TCGA-HC-7213 TCGA-HC-7230 TCGA-HC-7231 TCGA-HC-7233 
        0.79        28.60         1.97         1.68         2.37         1.71 
TCGA-HC-7736 TCGA-HC-7737 TCGA-HC-7740 TCGA-HC-7742 TCGA-HC-7744 TCGA-HC-7747 
        0.72         2.10         1.74         1.48         1.68         1.87 
TCGA-HC-7748 TCGA-HC-7749 TCGA-HC-7750 TCGA-HC-7752 TCGA-HC-7818 TCGA-HC-7821 
       26.04         1.97         1.12         3.22         1.48         1.84 
TCGA-HC-8265 TCGA-HC-A48F TCGA-HI-7168 TCGA-HI-7169 TCGA-HI-7170 TCGA-HI-7171 
       15.88         1.51        65.92        64.08        62.43        66.02 
TCGA-J4-8198 
       20.19 

$subtype4
TCGA-EJ-A46F TCGA-EJ-A46G TCGA-FC-7961 TCGA-FC-A4JI TCGA-FC-A5OB TCGA-FC-A6HD 
        9.83         3.06        15.42        13.45         8.98         1.78 
TCGA-G9-6339 TCGA-G9-6354 TCGA-G9-6379 TCGA-G9-6498 TCGA-H9-A6BY TCGA-HC-7080 
       65.98        49.35        45.80        52.87         3.68         2.01 
TCGA-HC-8216 TCGA-HC-A4ZV TCGA-HC-A632 TCGA-HC-A6AL TCGA-HC-A6AO TCGA-HC-A6AQ 
       22.42         0.76         2.01         2.20         5.49         3.48 
TCGA-HC-A6HY TCGA-J4-A67M TCGA-J4-A67N TCGA-M7-A71Z TCGA-M7-A721 TCGA-QU-A6IL 
        4.41        16.04        16.54         6.87         6.71         3.19 
TCGA-QU-A6IM TCGA-QU-A6IP 
       41.00        65.88 

$subtype5
TCGA-EJ-A46B TCGA-EJ-A46D TCGA-EJ-A46E TCGA-EJ-A46I TCGA-FC-A66V TCGA-G9-6329 
        5.33         4.24        17.49        21.96        17.23        41.62 
TCGA-G9-6353 TCGA-HC-A6AP TCGA-HC-A6AS TCGA-HC-A6HX TCGA-J4-A83K 
       50.70         2.33         1.45         1.25         6.77 

subtype1 subtype2 subtype3 subtype4 subtype5 
    0.92     1.05     0.30     0.76     1.25 
subtype1 subtype2 subtype3 subtype4 subtype5 
   65.98    56.48    66.12    65.98    50.70 
subtype1 subtype2 subtype3 subtype4 subtype5 
  30.295   18.015   10.320    7.925    6.770 
[1] "0.9 - 66.0 (30.3)" "1.1 - 56.5 (18.0)" "0.3 - 66.1 (10.3)"
[4] "0.8 - 66.0 (7.9)"  "1.2 - 50.7 (6.8)" 
  [1] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
  [7] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [13] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [19] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [25] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [31] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
 [37] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [43] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [49] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [55] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [61] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype3"
 [67] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
 [73] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
 [79] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
 [85] "subtype2" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
 [91] "subtype3" "subtype3" "subtype3" "subtype3" "subtype5" "subtype5"
 [97] "subtype5" "subtype4" "subtype4" "subtype2" "subtype5" "subtype3"
[103] "subtype4" "subtype4" "subtype4" "subtype5" "subtype4" "subtype5"
[109] "subtype1" "subtype3" "subtype1" "subtype3" "subtype4" "subtype3"
[115] "subtype3" "subtype2" "subtype1" "subtype3" "subtype5" "subtype4"
[121] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
[127] "subtype3" "subtype1" "subtype3" "subtype1" "subtype1" "subtype1"
[133] "subtype3" "subtype1" "subtype4" "subtype1" "subtype1" "subtype1"
[139] "subtype1" "subtype4" "subtype3" "subtype3" "subtype2" "subtype3"
[145] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype4"
[151] "subtype3" "subtype3" "subtype3" "subtype3" "subtype4" "subtype3"
[157] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[163] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[169] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
[175] "subtype3" "subtype4" "subtype3" "subtype3" "subtype4" "subtype4"
[181] "subtype4" "subtype4" "subtype5" "subtype4" "subtype5" "subtype5"
[187] "subtype4" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[193] "subtype2" "subtype4" "subtype4" "subtype2" "subtype5" "subtype4"
[199] "subtype4" "subtype4" "subtype4" "subtype4"
  [1] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
  [7] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [13] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [19] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [25] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [31] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
 [37] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [43] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [49] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [55] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [61] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype3"
 [67] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
 [73] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
 [79] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
 [85] "subtype2" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
 [91] "subtype3" "subtype3" "subtype3" "subtype3" "subtype5" "subtype5"
 [97] "subtype5" "subtype4" "subtype4" "subtype2" "subtype5" "subtype3"
[103] "subtype4" "subtype4" "subtype4" "subtype5" "subtype4" "subtype5"
[109] "subtype1" "subtype3" "subtype1" "subtype3" "subtype4" "subtype3"
[115] "subtype3" "subtype2" "subtype1" "subtype3" "subtype5" "subtype4"
[121] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
[127] "subtype3" "subtype1" "subtype3" "subtype1" "subtype1" "subtype1"
[133] "subtype3" "subtype1" "subtype4" "subtype1" "subtype1" "subtype1"
[139] "subtype1" "subtype4" "subtype3" "subtype3" "subtype2" "subtype3"
[145] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype4"
[151] "subtype3" "subtype3" "subtype3" "subtype3" "subtype4" "subtype3"
[157] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[163] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[169] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
[175] "subtype3" "subtype4" "subtype3" "subtype3" "subtype4" "subtype4"
[181] "subtype4" "subtype4" "subtype5" "subtype4" "subtype5" "subtype5"
[187] "subtype4" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[193] "subtype2" "subtype4" "subtype4" "subtype2" "subtype5" "subtype4"
[199] "subtype4" "subtype4" "subtype4" "subtype4"
  [1] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
  [7] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [13] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [19] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [25] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [31] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
 [37] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [43] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [49] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [55] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [61] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype3"
 [67] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
 [73] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
 [79] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
 [85] "subtype2" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
 [91] "subtype3" "subtype3" "subtype3" "subtype3" "subtype5" "subtype5"
 [97] "subtype5" "subtype4" "subtype4" "subtype2" "subtype5" "subtype3"
[103] "subtype4" "subtype4" "subtype4" "subtype5" "subtype4" "subtype5"
[109] "subtype1" "subtype3" "subtype1" "subtype3" "subtype4" "subtype3"
[115] "subtype3" "subtype2" "subtype1" "subtype3" "subtype5" "subtype4"
[121] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
[127] "subtype3" "subtype1" "subtype3" "subtype1" "subtype1" "subtype1"
[133] "subtype3" "subtype1" "subtype4" "subtype1" "subtype1" "subtype1"
[139] "subtype1" "subtype4" "subtype3" "subtype3" "subtype2" "subtype3"
[145] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype4"
[151] "subtype3" "subtype3" "subtype3" "subtype3" "subtype4" "subtype3"
[157] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[163] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[169] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
[175] "subtype3" "subtype4" "subtype3" "subtype3" "subtype4" "subtype4"
[181] "subtype4" "subtype4" "subtype5" "subtype4" "subtype5" "subtype5"
[187] "subtype4" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[193] "subtype2" "subtype4" "subtype4" "subtype2" "subtype5" "subtype4"
[199] "subtype4" "subtype4" "subtype4" "subtype4"
D9V2, continuous
          vv
clus       T2 T3 T4
  subtype1 29 46  4
  subtype2  8  4  0
  subtype3 37 36  0
  subtype4 10 16  0
  subtype5  6  4  0
D9V3, multiclass
D9V4, binary
          cls
clus        0  1
  subtype1 64 11
  subtype2  8  0
  subtype3 58  4
  subtype4 18  1
  subtype5  7  0
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   64   11
  subtype2    8    0
  subtype3   58    4
  subtype4   18    1
  subtype5    7    0
          vv
clus       R0 R1 RX
  subtype1 61 18  1
  subtype2  9  2  0
  subtype3 54 10  2
  subtype4 19  5  1
  subtype5  8  1  1
D9V5, multiclass
D9V6, continuous
D9V7, continuous
D9V8, continuous
D9V9, continuous
D9V10, continuous
D9V11, continuous
D9V12, continuous
D9V13, continuous
D9V14, continuous

Clustering(10) Variable = MIRSEQ_MATURE_CHIERARCHICAL
D10V1, survival
          sevent
clus2       0  1
  subtype1 67  0
  subtype2 28  0
  subtype3 63  1
  subtype4 43  0
subtype1 subtype2 subtype3 subtype4 
      67       28       64       43 
subtype1 subtype2 subtype3 subtype4 
       0        0        1        0 
$subtype1
TCGA-CH-5737 TCGA-CH-5738 TCGA-CH-5739 TCGA-CH-5740 TCGA-CH-5741 TCGA-CH-5743 
        2.99         6.97        22.06         1.02        12.99        13.97 
TCGA-CH-5744 TCGA-CH-5745 TCGA-CH-5746 TCGA-CH-5748 TCGA-CH-5750 TCGA-CH-5752 
        1.97         2.99        24.03         1.02        13.02        31.00 
TCGA-CH-5753 TCGA-CH-5754 TCGA-CH-5761 TCGA-CH-5762 TCGA-CH-5763 TCGA-CH-5764 
        1.02         2.04         0.92        44.02        12.00         1.02 
TCGA-CH-5765 TCGA-CH-5766 TCGA-CH-5767 TCGA-CH-5768 TCGA-CH-5769 TCGA-CH-5771 
       23.01         1.02        15.06        24.03         2.04        13.02 
TCGA-CH-5789 TCGA-CH-5790 TCGA-CH-5791 TCGA-CH-5792 TCGA-CH-5794 TCGA-EJ-5495 
        9.99        32.02        33.01         2.99        29.00        33.11 
TCGA-EJ-5496 TCGA-EJ-5497 TCGA-EJ-5498 TCGA-EJ-5499 TCGA-EJ-5501 TCGA-EJ-5503 
       19.56        13.32        29.79        17.52        30.81        23.54 
TCGA-EJ-5505 TCGA-EJ-5506 TCGA-EJ-5507 TCGA-EJ-5508 TCGA-EJ-5509 TCGA-EJ-5510 
       30.31        27.19        23.90        38.93        36.23        36.69 
TCGA-EJ-5512 TCGA-EJ-5515 TCGA-EJ-5516 TCGA-EJ-5519 TCGA-EJ-5521 TCGA-EJ-5522 
       38.53        40.77        46.55        43.92        51.88        48.07 
TCGA-EJ-5524 TCGA-EJ-5525 TCGA-EJ-5526 TCGA-EJ-5527 TCGA-EJ-5531 TCGA-EJ-5542 
       43.07        36.66        38.76        39.75        30.28        29.06 
TCGA-FC-A4JI TCGA-G9-6332 TCGA-G9-6336 TCGA-G9-6348 TCGA-G9-6356 TCGA-G9-6362 
       13.45        65.92        65.98        49.81        47.15        47.44 
TCGA-G9-6364 TCGA-G9-6367 TCGA-G9-6370 TCGA-G9-6371 TCGA-G9-6373 TCGA-G9-6384 
       39.39        40.18        38.01        40.31        26.66        25.15 
TCGA-G9-6496 
       56.75 

$subtype2
TCGA-CH-5772 TCGA-EJ-5502 TCGA-EJ-5511 TCGA-EJ-5514 TCGA-EJ-5517 TCGA-EJ-5518 
       15.98         8.05        32.02        36.23        47.80        52.27 
TCGA-EJ-5530 TCGA-EJ-5532 TCGA-EJ-7786 TCGA-EJ-7788 TCGA-EJ-7792 TCGA-G9-6338 
       41.82        47.87        14.53         1.71        17.29        65.98 
TCGA-G9-6343 TCGA-G9-6347 TCGA-G9-6363 TCGA-G9-6365 TCGA-G9-6378 TCGA-G9-6385 
       18.21        56.48        45.30        44.81        37.97        27.29 
TCGA-G9-6494 TCGA-G9-7519 TCGA-G9-7521 TCGA-G9-7523 TCGA-H9-A6BX TCGA-HC-7075 
       58.22        27.91        30.97        28.18        18.74        19.76 
TCGA-HC-7750 TCGA-HI-7169 TCGA-J4-8200 TCGA-J4-A67O 
        1.12        64.08        12.30        16.14 

$subtype3
TCGA-EJ-5504 TCGA-EJ-7115 TCGA-EJ-7123 TCGA-EJ-7125 TCGA-EJ-7314 TCGA-EJ-7315 
       28.93        27.02        49.02        61.15         9.70         9.50 
TCGA-EJ-7317 TCGA-EJ-7327 TCGA-EJ-7328 TCGA-EJ-7330 TCGA-EJ-7331 TCGA-EJ-7781 
        9.37         5.75         5.59         6.28         0.30         5.56 
TCGA-EJ-7782 TCGA-EJ-7783 TCGA-EJ-7784 TCGA-EJ-7785 TCGA-EJ-7789 TCGA-EJ-7791 
        2.10         4.31         5.49        20.55        18.15        19.59 
TCGA-EJ-7794 TCGA-EJ-8468 TCGA-EJ-8469 TCGA-EJ-8470 TCGA-EJ-8472 TCGA-EJ-8474 
       23.05        64.47        63.98        26.99        66.12        10.32 
TCGA-FC-7708 TCGA-G9-6333 TCGA-G9-6342 TCGA-G9-6351 TCGA-G9-6361 TCGA-G9-6366 
       28.41        65.95        55.76        46.16        46.52         3.32 
TCGA-G9-6369 TCGA-G9-6377 TCGA-G9-6499 TCGA-G9-7510 TCGA-G9-7522 TCGA-G9-7525 
       39.95        31.50        50.73        38.96        21.30        32.68 
TCGA-H9-7775 TCGA-HC-7077 TCGA-HC-7078 TCGA-HC-7079 TCGA-HC-7080 TCGA-HC-7209 
        6.08        65.98         5.33         2.93         2.01         1.35 
TCGA-HC-7211 TCGA-HC-7212 TCGA-HC-7213 TCGA-HC-7230 TCGA-HC-7231 TCGA-HC-7233 
        0.79        28.60         1.97         1.68         2.37         1.71 
TCGA-HC-7736 TCGA-HC-7737 TCGA-HC-7740 TCGA-HC-7742 TCGA-HC-7744 TCGA-HC-7747 
        0.72         2.10         1.74         1.48         1.68         1.87 
TCGA-HC-7748 TCGA-HC-7749 TCGA-HC-7752 TCGA-HC-7818 TCGA-HC-7821 TCGA-HC-A48F 
       26.04         1.97         3.22         1.48         1.84         1.51 
TCGA-HI-7168 TCGA-HI-7170 TCGA-HI-7171 TCGA-J4-8198 
       65.92        62.43        66.02        20.19 

$subtype4
TCGA-CH-5788 TCGA-EJ-5494 TCGA-EJ-7321 TCGA-EJ-7793 TCGA-EJ-7797 TCGA-EJ-A46B 
       26.99        27.16         7.66         1.41        12.13         5.33 
TCGA-EJ-A46D TCGA-EJ-A46E TCGA-EJ-A46F TCGA-EJ-A46G TCGA-EJ-A46H TCGA-EJ-A46I 
        4.24        17.49         9.83         3.06         7.53        21.96 
TCGA-FC-7961 TCGA-FC-A5OB TCGA-FC-A66V TCGA-FC-A6HD TCGA-G9-6329 TCGA-G9-6339 
       15.42         8.98        17.23         1.78        41.62        65.98 
TCGA-G9-6353 TCGA-G9-6354 TCGA-G9-6379 TCGA-G9-6498 TCGA-H9-A6BY TCGA-HC-7817 
       50.70        49.35        45.80        52.87         3.68         1.05 
TCGA-HC-8216 TCGA-HC-8265 TCGA-HC-A4ZV TCGA-HC-A632 TCGA-HC-A6AL TCGA-HC-A6AO 
       22.42        15.88         0.76         2.01         2.20         5.49 
TCGA-HC-A6AP TCGA-HC-A6AQ TCGA-HC-A6AS TCGA-HC-A6HX TCGA-HC-A6HY TCGA-J4-A67M 
        2.33         3.48         1.45         1.25         4.41        16.04 
TCGA-J4-A67N TCGA-J4-A83K TCGA-M7-A71Z TCGA-M7-A721 TCGA-QU-A6IL TCGA-QU-A6IM 
       16.54         6.77         6.87         6.71         3.19        41.00 
TCGA-QU-A6IP 
       65.88 

subtype1 subtype2 subtype3 subtype4 
    0.92     1.12     0.30     0.76 
subtype1 subtype2 subtype3 subtype4 
   65.98    65.98    66.12    65.98 
subtype1 subtype2 subtype3 subtype4 
  29.000   29.575    9.600    7.660 
[1] "0.9 - 66.0 (29.0)" "1.1 - 66.0 (29.6)" "0.3 - 66.1 (9.6)" 
[4] "0.8 - 66.0 (7.7)" 
  [1] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
  [7] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [13] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [19] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [25] "subtype2" "subtype4" "subtype1" "subtype1" "subtype1" "subtype1"
 [31] "subtype1" "subtype4" "subtype1" "subtype1" "subtype1" "subtype1"
 [37] "subtype1" "subtype1" "subtype2" "subtype1" "subtype3" "subtype1"
 [43] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
 [49] "subtype1" "subtype2" "subtype1" "subtype1" "subtype2" "subtype2"
 [55] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [61] "subtype1" "subtype2" "subtype1" "subtype2" "subtype1" "subtype3"
 [67] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype4"
 [73] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
 [79] "subtype3" "subtype3" "subtype3" "subtype2" "subtype2" "subtype3"
 [85] "subtype3" "subtype2" "subtype4" "subtype3" "subtype4" "subtype3"
 [91] "subtype3" "subtype3" "subtype3" "subtype3" "subtype4" "subtype4"
 [97] "subtype4" "subtype4" "subtype4" "subtype4" "subtype4" "subtype3"
[103] "subtype4" "subtype1" "subtype4" "subtype4" "subtype4" "subtype4"
[109] "subtype1" "subtype3" "subtype1" "subtype2" "subtype4" "subtype3"
[115] "subtype2" "subtype2" "subtype1" "subtype3" "subtype4" "subtype4"
[121] "subtype1" "subtype3" "subtype1" "subtype2" "subtype1" "subtype2"
[127] "subtype3" "subtype1" "subtype3" "subtype1" "subtype1" "subtype1"
[133] "subtype3" "subtype2" "subtype4" "subtype1" "subtype2" "subtype2"
[139] "subtype1" "subtype4" "subtype3" "subtype3" "subtype2" "subtype2"
[145] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype4"
[151] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[157] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[163] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[169] "subtype3" "subtype3" "subtype2" "subtype3" "subtype4" "subtype3"
[175] "subtype3" "subtype4" "subtype4" "subtype3" "subtype4" "subtype4"
[181] "subtype4" "subtype4" "subtype4" "subtype4" "subtype4" "subtype4"
[187] "subtype4" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
[193] "subtype2" "subtype4" "subtype4" "subtype2" "subtype4" "subtype4"
[199] "subtype4" "subtype4" "subtype4" "subtype4"
  [1] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
  [7] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [13] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [19] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [25] "subtype2" "subtype4" "subtype1" "subtype1" "subtype1" "subtype1"
 [31] "subtype1" "subtype4" "subtype1" "subtype1" "subtype1" "subtype1"
 [37] "subtype1" "subtype1" "subtype2" "subtype1" "subtype3" "subtype1"
 [43] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
 [49] "subtype1" "subtype2" "subtype1" "subtype1" "subtype2" "subtype2"
 [55] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [61] "subtype1" "subtype2" "subtype1" "subtype2" "subtype1" "subtype3"
 [67] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype4"
 [73] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
 [79] "subtype3" "subtype3" "subtype3" "subtype2" "subtype2" "subtype3"
 [85] "subtype3" "subtype2" "subtype4" "subtype3" "subtype4" "subtype3"
 [91] "subtype3" "subtype3" "subtype3" "subtype3" "subtype4" "subtype4"
 [97] "subtype4" "subtype4" "subtype4" "subtype4" "subtype4" "subtype3"
[103] "subtype4" "subtype1" "subtype4" "subtype4" "subtype4" "subtype4"
[109] "subtype1" "subtype3" "subtype1" "subtype2" "subtype4" "subtype3"
[115] "subtype2" "subtype2" "subtype1" "subtype3" "subtype4" "subtype4"
[121] "subtype1" "subtype3" "subtype1" "subtype2" "subtype1" "subtype2"
[127] "subtype3" "subtype1" "subtype3" "subtype1" "subtype1" "subtype1"
[133] "subtype3" "subtype2" "subtype4" "subtype1" "subtype2" "subtype2"
[139] "subtype1" "subtype4" "subtype3" "subtype3" "subtype2" "subtype2"
[145] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype4"
[151] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[157] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[163] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[169] "subtype3" "subtype3" "subtype2" "subtype3" "subtype4" "subtype3"
[175] "subtype3" "subtype4" "subtype4" "subtype3" "subtype4" "subtype4"
[181] "subtype4" "subtype4" "subtype4" "subtype4" "subtype4" "subtype4"
[187] "subtype4" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
[193] "subtype2" "subtype4" "subtype4" "subtype2" "subtype4" "subtype4"
[199] "subtype4" "subtype4" "subtype4" "subtype4"
  [1] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
  [7] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [13] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [19] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [25] "subtype2" "subtype4" "subtype1" "subtype1" "subtype1" "subtype1"
 [31] "subtype1" "subtype4" "subtype1" "subtype1" "subtype1" "subtype1"
 [37] "subtype1" "subtype1" "subtype2" "subtype1" "subtype3" "subtype1"
 [43] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
 [49] "subtype1" "subtype2" "subtype1" "subtype1" "subtype2" "subtype2"
 [55] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [61] "subtype1" "subtype2" "subtype1" "subtype2" "subtype1" "subtype3"
 [67] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype4"
 [73] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
 [79] "subtype3" "subtype3" "subtype3" "subtype2" "subtype2" "subtype3"
 [85] "subtype3" "subtype2" "subtype4" "subtype3" "subtype4" "subtype3"
 [91] "subtype3" "subtype3" "subtype3" "subtype3" "subtype4" "subtype4"
 [97] "subtype4" "subtype4" "subtype4" "subtype4" "subtype4" "subtype3"
[103] "subtype4" "subtype1" "subtype4" "subtype4" "subtype4" "subtype4"
[109] "subtype1" "subtype3" "subtype1" "subtype2" "subtype4" "subtype3"
[115] "subtype2" "subtype2" "subtype1" "subtype3" "subtype4" "subtype4"
[121] "subtype1" "subtype3" "subtype1" "subtype2" "subtype1" "subtype2"
[127] "subtype3" "subtype1" "subtype3" "subtype1" "subtype1" "subtype1"
[133] "subtype3" "subtype2" "subtype4" "subtype1" "subtype2" "subtype2"
[139] "subtype1" "subtype4" "subtype3" "subtype3" "subtype2" "subtype2"
[145] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype4"
[151] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[157] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[163] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[169] "subtype3" "subtype3" "subtype2" "subtype3" "subtype4" "subtype3"
[175] "subtype3" "subtype4" "subtype4" "subtype3" "subtype4" "subtype4"
[181] "subtype4" "subtype4" "subtype4" "subtype4" "subtype4" "subtype4"
[187] "subtype4" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
[193] "subtype2" "subtype4" "subtype4" "subtype2" "subtype4" "subtype4"
[199] "subtype4" "subtype4" "subtype4" "subtype4"
D10V2, continuous
          vv
clus       T2 T3 T4
  subtype1 23 43  0
  subtype2 16  8  4
  subtype3 33 31  0
  subtype4 18 24  0
D10V3, multiclass
D10V4, binary
          cls
clus        0  1
  subtype1 54  9
  subtype2 19  1
  subtype3 53  4
  subtype4 29  2
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   54    9
  subtype2   19    1
  subtype3   53    4
  subtype4   29    2
   clus
vv  subtype1 subtype2 subtype3 subtype4
  0       54       19       53       29
  1        9        1        4        2
          vv
clus       R0 R1 RX
  subtype1 53 13  1
  subtype2 20  8  0
  subtype3 47  8  2
  subtype4 31  7  2
D10V5, multiclass
D10V6, continuous
D10V7, continuous
D10V8, continuous
D10V9, continuous
D10V10, continuous
D10V11, continuous
D10V12, continuous
D10V13, continuous
D10V14, continuous
> q(save="no")
