
R version 2.10.1 (2009-12-14)
Copyright (C) 2009 The R Foundation for Statistical Computing
ISBN 3-900051-07-0

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> source("/xchip/tcga/gdac_prod/applications/process_mgmt/firehose_task_registry/tcga-gdac/GDAC_Correlate_Genomic_Events/broadinstitute.org/cancer.genome.analysis/10441/13/Correlate_Genomic_Events.R")
> result <- main("/xchip/tcga/gdac_prod/applications/process_mgmt/firehose_task_registry/tcga-gdac/GDAC_Correlate_Genomic_Events/broadinstitute.org/cancer.genome.analysis/10441/13/", "-nF=/xchip/tcga/Tools/Nozzle/v1.current", "-tTRUE", "-iD=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/PRAD-TP/8209188/transformed.cor.cli.txt", "-iC=/xchip/cga/gdac-prod/tcga-gdac/jobResults/Append_Data/PRAD-TP/8143121/PRAD-TP.merged_data.txt", "-fF=", "-fC=3", "-fH=5", "-fW=9", "-fP=OUT", "-cP=1", "-cQ=0.25", "-MF=ONLYSIG", "-oT=PRAD-TP", "-nV=Nozzle.R1", "-OP=MUTSIG", "-iT=", "-iX=")
[1] "terrence_modification_tag"
[1] TRUE
[1] "nver"          "-nV=Nozzle.R1"
[1] "nfn"                                 "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "successfully load Nozzle.R1"
[1] "ofn"         "-oT=PRAD-TP"
[1] "opt"        "-OP=MUTSIG"
[1] "tl"   "-iT="
[1] "dx"   "-iX="
[1] "opt"    "MUTSIG"
[1] "dx" ""  
[1] "cfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/Append_Data/PRAD-TP/8143121/PRAD-TP.merged_data.txt"
[1] "dfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/PRAD-TP/8209188/transformed.cor.cli.txt"

nPatients in clinical file=210, in cluster file=261, common to both=200
[1] "Reduce the number of clustering variables from 10 to 9."
[1]   9 200
[1] "KIDINS220 MUTATION ANALYSIS"
[1] 3
  KIDINS220 MUTATED KIDINS220 WILD-TYPE 
                  3                 197 
  KIDINS220 MUTATED KIDINS220 WILD-TYPE 
                  3                 197 
[1] "CTNNB1 MUTATION ANALYSIS"
[1] 3
  CTNNB1 MUTATED CTNNB1 WILD-TYPE 
               5              195 
  CTNNB1 MUTATED CTNNB1 WILD-TYPE 
               5              195 
[1] "SPOP MUTATION ANALYSIS"
[1] 3
  SPOP MUTATED SPOP WILD-TYPE 
            17            183 
  SPOP MUTATED SPOP WILD-TYPE 
            17            183 
[1] "TP53 MUTATION ANALYSIS"
[1] 3
  TP53 MUTATED TP53 WILD-TYPE 
            18            182 
  TP53 MUTATED TP53 WILD-TYPE 
            18            182 
[1] "PTEN MUTATION ANALYSIS"
[1] 3
  PTEN MUTATED PTEN WILD-TYPE 
             9            191 
  PTEN MUTATED PTEN WILD-TYPE 
             9            191 
[1] "FOXA1 MUTATION ANALYSIS"
[1] 3
  FOXA1 MUTATED FOXA1 WILD-TYPE 
             10             190 
  FOXA1 MUTATED FOXA1 WILD-TYPE 
             10             190 
[1] "IDH1 MUTATION ANALYSIS"
[1] 3
  IDH1 MUTATED IDH1 WILD-TYPE 
             3            197 
  IDH1 MUTATED IDH1 WILD-TYPE 
             3            197 
[1] "NKX3-1 MUTATION ANALYSIS"
[1] 3
  NKX3-1 MUTATED NKX3-1 WILD-TYPE 
               5              195 
  NKX3-1 MUTATED NKX3-1 WILD-TYPE 
               5              195 
[1] "CDKN1B MUTATION ANALYSIS"
[1] 3
  CDKN1B MUTATED CDKN1B WILD-TYPE 
               3              197 
  CDKN1B MUTATED CDKN1B WILD-TYPE 
               3              197 
[1] "terrence_modification_tag"
[1] TRUE
[1] "data2feature, selection="
 [1] "YEARSTOBIRTH"                          
 [2] "VITALSTATUS"                           
 [3] "DAYSTODEATH"                           
 [4] "DAYSTOLASTFOLLOWUP"                    
 [5] "PRIMARYSITEOFDESEASE"                  
 [6] "NEOPLASM.DISEASESTAGE"                 
 [7] "PATHOLOGY.T.STAGE"                     
 [8] "PATHOLOGY.N.STAGE"                     
 [9] "PATHOLOGY.M.STAGE"                     
[10] "DCCUPLOADDATE"                         
[11] "GENDER"                                
[12] "DATEOFINITIALPATHOLOGICDIAGNOSIS"      
[13] "RADIATIONTHERAPY"                      
[14] "HISTOLOGICALTYPE"                      
[15] "RADIATIONS.RADIATION.REGIMENINDICATION"
[16] "COMPLETENESS.OF.RESECTION"             
[17] "NUMBER.OF.LYMPH.NODES"                 
[18] "GLEASON_SCORE_COMBINED"                
[19] "GLEASON_SCORE_PRIMARY"                 
[20] "GLEASON_SCORE_SECONDARY"               
[21] "HIGHEST_GLEASON_SCORE"                 
[22] "GLEASON_SCORE"                         
[23] "PSA_RESULT_PREOP"                      
[24] "DAYS_TO_PREOP_PSA"                     
[25] "PSA_VALUE"                             
[26] "DAYS_TO_PSA"                           
[27] "BATCHNUMBER"                           

Input Data has 27 rows and 200 columns.

[1] "Batch" "27"   
[1] "Last Follow UP"
TCGA-CH-5737 TCGA-CH-5738 TCGA-CH-5739 TCGA-CH-5740 TCGA-CH-5741 TCGA-CH-5743 
          91          212          671           31          395          425 
TCGA-CH-5744 TCGA-CH-5745 TCGA-CH-5746 TCGA-CH-5748 TCGA-CH-5750 TCGA-CH-5751 
          60           91          731           31          396         1065 
TCGA-CH-5752 TCGA-CH-5753 TCGA-CH-5754 TCGA-CH-5761 TCGA-CH-5762 TCGA-CH-5763 
         943           31           62           28         1339          365 
TCGA-CH-5764 TCGA-CH-5765 TCGA-CH-5766 TCGA-CH-5767 TCGA-CH-5768 TCGA-CH-5769 
          31          700           31          458          731           62 
TCGA-CH-5771 TCGA-CH-5772 TCGA-CH-5788 TCGA-CH-5789 TCGA-CH-5790 TCGA-CH-5791 
         396          486          821          304          974         1004 
TCGA-CH-5792 TCGA-CH-5794 TCGA-EJ-5494 TCGA-EJ-5495 TCGA-EJ-5496 TCGA-EJ-5497 
          91          882          826         1007          595          405 
TCGA-EJ-5498 TCGA-EJ-5499 TCGA-EJ-5501 TCGA-EJ-5502 TCGA-EJ-5503 TCGA-EJ-5504 
         906          533          937          245          716          880 
TCGA-EJ-5505 TCGA-EJ-5506 TCGA-EJ-5507 TCGA-EJ-5508 TCGA-EJ-5509 TCGA-EJ-5510 
         922          827          727         1184         1102         1116 
TCGA-EJ-5511 TCGA-EJ-5512 TCGA-EJ-5514 TCGA-EJ-5515 TCGA-EJ-5516 TCGA-EJ-5517 
         974         1172         1102         1240         1416         1454 
TCGA-EJ-5518 TCGA-EJ-5519 TCGA-EJ-5521 TCGA-EJ-5522 TCGA-EJ-5524 TCGA-EJ-5525 
        1590         1336         1578         1462         1310         1115 
TCGA-EJ-5526 TCGA-EJ-5527 TCGA-EJ-5530 TCGA-EJ-5531 TCGA-EJ-5532 TCGA-EJ-5542 
        1179         1209         1272          921         1456          884 
TCGA-EJ-7115 TCGA-EJ-7123 TCGA-EJ-7125 TCGA-EJ-7314 TCGA-EJ-7315 TCGA-EJ-7317 
         822         1491         1860          295          289          285 
TCGA-EJ-7321 TCGA-EJ-7327 TCGA-EJ-7328 TCGA-EJ-7330 TCGA-EJ-7331 TCGA-EJ-7781 
         233          175          170          191            9          169 
TCGA-EJ-7782 TCGA-EJ-7783 TCGA-EJ-7784 TCGA-EJ-7785 TCGA-EJ-7786 TCGA-EJ-7788 
          64          131          167          625          442           52 
TCGA-EJ-7789 TCGA-EJ-7791 TCGA-EJ-7792 TCGA-EJ-7793 TCGA-EJ-7794 TCGA-EJ-7797 
         552          596          526           43          701          369 
TCGA-EJ-8468 TCGA-EJ-8469 TCGA-EJ-8470 TCGA-EJ-8472 TCGA-EJ-8474 TCGA-EJ-A46B 
        1961         1946          821           NA          314          162 
TCGA-EJ-A46D TCGA-EJ-A46E TCGA-EJ-A46F TCGA-EJ-A46G TCGA-EJ-A46H TCGA-EJ-A46I 
         129          532          299           93          229          668 
TCGA-FC-7708 TCGA-FC-7961 TCGA-FC-A4JI TCGA-FC-A5OB TCGA-FC-A66V TCGA-FC-A6HD 
         864          469          409          273          524           54 
TCGA-G9-6329 TCGA-G9-6332 TCGA-G9-6333 TCGA-G9-6336 TCGA-G9-6338 TCGA-G9-6339 
        1266         2657         2465         2068         2028         2110 
TCGA-G9-6342 TCGA-G9-6343 TCGA-G9-6347 TCGA-G9-6348 TCGA-G9-6351 TCGA-G9-6353 
        1696          554         1718         1515         1404         1542 
TCGA-G9-6354 TCGA-G9-6356 TCGA-G9-6361 TCGA-G9-6362 TCGA-G9-6363 TCGA-G9-6364 
        1501         1434         1415         1443         1378         1198 
TCGA-G9-6365 TCGA-G9-6366 TCGA-G9-6367 TCGA-G9-6369 TCGA-G9-6370 TCGA-G9-6371 
        1363          101         1222         1215         1156         1226 
TCGA-G9-6373 TCGA-G9-6377 TCGA-G9-6378 TCGA-G9-6379 TCGA-G9-6384 TCGA-G9-6385 
         811          958         1155         1393          765          830 
TCGA-G9-6494 TCGA-G9-6496 TCGA-G9-6498 TCGA-G9-6499 TCGA-G9-7510 TCGA-G9-7519 
        1771         1726         1608         1543         1185          849 
TCGA-G9-7521 TCGA-G9-7522 TCGA-G9-7523 TCGA-G9-7525 TCGA-H9-7775 TCGA-H9-A6BX 
         942          648          857          994          185          570 
TCGA-H9-A6BY TCGA-HC-7075 TCGA-HC-7077 TCGA-HC-7078 TCGA-HC-7079 TCGA-HC-7080 
         112          601           NA          162           89           61 
TCGA-HC-7209 TCGA-HC-7211 TCGA-HC-7212 TCGA-HC-7213 TCGA-HC-7230 TCGA-HC-7231 
          41           24          870           60           51           72 
TCGA-HC-7233 TCGA-HC-7736 TCGA-HC-7737 TCGA-HC-7740 TCGA-HC-7742 TCGA-HC-7744 
          52           22           64           53           45           51 
TCGA-HC-7747 TCGA-HC-7748 TCGA-HC-7749 TCGA-HC-7750 TCGA-HC-7752 TCGA-HC-7817 
          57          792           60           34           98           32 
TCGA-HC-7818 TCGA-HC-7821 TCGA-HC-8216 TCGA-HC-8265 TCGA-HC-A48F TCGA-HC-A4ZV 
          45           56          682          483           46           23 
TCGA-HC-A632 TCGA-HC-A6AL TCGA-HC-A6AO TCGA-HC-A6AP TCGA-HC-A6AQ TCGA-HC-A6AS 
          61           67          167           71          106           44 
TCGA-HC-A6HX TCGA-HC-A6HY TCGA-HI-7168 TCGA-HI-7169 TCGA-HI-7170 TCGA-HI-7171 
          38          134         2391         1949         1899           NA 
TCGA-J4-8198 TCGA-J4-8200 TCGA-J4-A67M TCGA-J4-A67N TCGA-J4-A67O TCGA-QU-A6IL 
         614          374          488          503          491           97 
TCGA-QU-A6IM TCGA-QU-A6IP 
        1247         2620 
Variable 1:'AGE':	nDistinctValues=31,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 2:'VITALSTATUS':	nDistinctValues=2,	numeric=TRUE,	binary=TRUE,	exclude=TRUE.
Variable 3:'DAYSTODEATH':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 4:'DAYSTOLASTFOLLOWUP':	nDistinctValues=177,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 5:'PRIMARY.SITE.OF.DISEASE':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 6:'NEOPLASM.DISEASESTAGE':	nDistinctValues=0,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 7:'PATHOLOGY.T.STAGE':	nDistinctValues=6,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'PATHOLOGY.N.STAGE':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 9:'PATHOLOGY.M.STAGE':	nDistinctValues=0,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 10:'DCCUPLOADDAY':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 11:'GENDER':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 12:'DAYOFINITIALPATHOLOGICDIAGNOSIS':	nDistinctValues=12,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 13:'RADIATION.THERAPY':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 14:'HISTOLOGICAL.TYPE':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 15:'RADIATIONS.RADIATION.REGIMENINDICATION':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 16:'COMPLETENESS.OF.RESECTION':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 17:'NUMBER.OF.LYMPH.NODES':	nDistinctValues=5,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 18:'GLEASON_SCORE_COMBINED':	nDistinctValues=6,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 19:'GLEASON_SCORE_PRIMARY':	nDistinctValues=5,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 20:'GLEASON_SCORE_SECONDARY':	nDistinctValues=4,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 21:'HIGHEST_GLEASON_SCORE':	nDistinctValues=0,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 22:'GLEASON_SCORE':	nDistinctValues=5,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 23:'PSA_RESULT_PREOP':	nDistinctValues=119,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 24:'DAYS_TO_PREOP_PSA':	nDistinctValues=104,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 25:'PSA_VALUE':	nDistinctValues=53,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 26:'DAYS_TO_PSA':	nDistinctValues=160,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 27:'BATCH.NUMBER':	nDistinctValues=20,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
[1] "rownames(nsurv.mat)"
 [1] "AGE"                       "PATHOLOGY.T.STAGE"        
 [3] "PATHOLOGY.N.STAGE"         "COMPLETENESS.OF.RESECTION"
 [5] "NUMBER.OF.LYMPH.NODES"     "GLEASON_SCORE_COMBINED"   
 [7] "GLEASON_SCORE_PRIMARY"     "GLEASON_SCORE_SECONDARY"  
 [9] "GLEASON_SCORE"             "PSA_RESULT_PREOP"         
[11] "DAYS_TO_PREOP_PSA"         "PSA_VALUE"                
[13] "DAYS_TO_PSA"              
[1] "TUMOR.?STAGE"
[1] "TUMOR.?GRADE"
[1] "PATHOLOGY.T" "2"          
[1] "PATHOLOGY.N" "3"          
Output Data has 200 columns, 1 survival variables, and 13 non-survival variables.
AGE, nv=31, binary=FALSE, numeric=TRUE
PATHOLOGY.T.STAGE, nv=3, binary=FALSE, numeric=TRUE
[1] "grepl('PATHOLOGY.T',vnm)"
vv
 T2  T3  T4 
 88 105   5 
[1] "table(vv)"
vv
 T2  T3  T4 
 88 105   5 
$ClinVariableName
[1] "PATHOLOGY.T.STAGE"

$Table
vv
 T2  T3  T4 
 88 105   5 

$nClasses
[1] 3

$ClinVariableType
[1] "multiclass(3)"


 T2  T3  T4 
 88 105   5 
PATHOLOGY.N.STAGE, nv=2, binary=FALSE, numeric=TRUE
COMPLETENESS.OF.RESECTION, nv=3, binary=FALSE, numeric=FALSE
NUMBER.OF.LYMPH.NODES, nv=5, binary=FALSE, numeric=TRUE
GLEASON_SCORE_COMBINED, nv=6, binary=FALSE, numeric=TRUE
GLEASON_SCORE_PRIMARY, nv=5, binary=FALSE, numeric=TRUE
GLEASON_SCORE_SECONDARY, nv=4, binary=FALSE, numeric=TRUE
GLEASON_SCORE, nv=5, binary=FALSE, numeric=TRUE
PSA_RESULT_PREOP, nv=119, binary=FALSE, numeric=TRUE
DAYS_TO_PREOP_PSA, nv=104, binary=FALSE, numeric=TRUE
PSA_VALUE, nv=53, binary=FALSE, numeric=TRUE
DAYS_TO_PSA, nv=160, binary=FALSE, numeric=TRUE

Clustering(1) Variable = KIDINS220 MUTATION ANALYSIS
D1V1, survival
                     sevent
clus2                   0   1
  KIDINS220 MUTATED     3   0
  KIDINS220 WILD-TYPE 196   1
  KIDINS220 MUTATED KIDINS220 WILD-TYPE 
                  3                 197 
  KIDINS220 MUTATED KIDINS220 WILD-TYPE 
                  0                   1 
$`KIDINS220 MUTATED`
TCGA-CH-5762 TCGA-EJ-7315 TCGA-HC-A6AQ 
       44.02         9.50         3.48 

$`KIDINS220 WILD-TYPE`
TCGA-CH-5737 TCGA-CH-5738 TCGA-CH-5739 TCGA-CH-5740 TCGA-CH-5741 TCGA-CH-5743 
        2.99         6.97        22.06         1.02        12.99        13.97 
TCGA-CH-5744 TCGA-CH-5745 TCGA-CH-5746 TCGA-CH-5748 TCGA-CH-5750 TCGA-CH-5751 
        1.97         2.99        24.03         1.02        13.02        35.01 
TCGA-CH-5752 TCGA-CH-5753 TCGA-CH-5754 TCGA-CH-5761 TCGA-CH-5763 TCGA-CH-5764 
       31.00         1.02         2.04         0.92        12.00         1.02 
TCGA-CH-5765 TCGA-CH-5766 TCGA-CH-5767 TCGA-CH-5768 TCGA-CH-5769 TCGA-CH-5771 
       23.01         1.02        15.06        24.03         2.04        13.02 
TCGA-CH-5772 TCGA-CH-5788 TCGA-CH-5789 TCGA-CH-5790 TCGA-CH-5791 TCGA-CH-5792 
       15.98        26.99         9.99        32.02        33.01         2.99 
TCGA-CH-5794 TCGA-EJ-5494 TCGA-EJ-5495 TCGA-EJ-5496 TCGA-EJ-5497 TCGA-EJ-5498 
       29.00        27.16        33.11        19.56        13.32        29.79 
TCGA-EJ-5499 TCGA-EJ-5501 TCGA-EJ-5502 TCGA-EJ-5503 TCGA-EJ-5504 TCGA-EJ-5505 
       17.52        30.81         8.05        23.54        28.93        30.31 
TCGA-EJ-5506 TCGA-EJ-5507 TCGA-EJ-5508 TCGA-EJ-5509 TCGA-EJ-5510 TCGA-EJ-5511 
       27.19        23.90        38.93        36.23        36.69        32.02 
TCGA-EJ-5512 TCGA-EJ-5514 TCGA-EJ-5515 TCGA-EJ-5516 TCGA-EJ-5517 TCGA-EJ-5518 
       38.53        36.23        40.77        46.55        47.80        52.27 
TCGA-EJ-5519 TCGA-EJ-5521 TCGA-EJ-5522 TCGA-EJ-5524 TCGA-EJ-5525 TCGA-EJ-5526 
       43.92        51.88        48.07        43.07        36.66        38.76 
TCGA-EJ-5527 TCGA-EJ-5530 TCGA-EJ-5531 TCGA-EJ-5532 TCGA-EJ-5542 TCGA-EJ-7115 
       39.75        41.82        30.28        47.87        29.06        27.02 
TCGA-EJ-7123 TCGA-EJ-7125 TCGA-EJ-7314 TCGA-EJ-7317 TCGA-EJ-7321 TCGA-EJ-7327 
       49.02        61.15         9.70         9.37         7.66         5.75 
TCGA-EJ-7328 TCGA-EJ-7330 TCGA-EJ-7331 TCGA-EJ-7781 TCGA-EJ-7782 TCGA-EJ-7783 
        5.59         6.28         0.30         5.56         2.10         4.31 
TCGA-EJ-7784 TCGA-EJ-7785 TCGA-EJ-7786 TCGA-EJ-7788 TCGA-EJ-7789 TCGA-EJ-7791 
        5.49        20.55        14.53         1.71        18.15        19.59 
TCGA-EJ-7792 TCGA-EJ-7793 TCGA-EJ-7794 TCGA-EJ-7797 TCGA-EJ-8468 TCGA-EJ-8469 
       17.29         1.41        23.05        12.13        64.47        63.98 
TCGA-EJ-8470 TCGA-EJ-8472 TCGA-EJ-8474 TCGA-EJ-A46B TCGA-EJ-A46D TCGA-EJ-A46E 
       26.99        66.12        10.32         5.33         4.24        17.49 
TCGA-EJ-A46F TCGA-EJ-A46G TCGA-EJ-A46H TCGA-EJ-A46I TCGA-FC-7708 TCGA-FC-7961 
        9.83         3.06         7.53        21.96        28.41        15.42 
TCGA-FC-A4JI TCGA-FC-A5OB TCGA-FC-A66V TCGA-FC-A6HD TCGA-G9-6329 TCGA-G9-6332 
       13.45         8.98        17.23         1.78        41.62        65.92 
TCGA-G9-6333 TCGA-G9-6336 TCGA-G9-6338 TCGA-G9-6339 TCGA-G9-6342 TCGA-G9-6343 
       65.95        65.98        65.98        65.98        55.76        18.21 
TCGA-G9-6347 TCGA-G9-6348 TCGA-G9-6351 TCGA-G9-6353 TCGA-G9-6354 TCGA-G9-6356 
       56.48        49.81        46.16        50.70        49.35        47.15 
TCGA-G9-6361 TCGA-G9-6362 TCGA-G9-6363 TCGA-G9-6364 TCGA-G9-6365 TCGA-G9-6366 
       46.52        47.44        45.30        39.39        44.81         3.32 
TCGA-G9-6367 TCGA-G9-6369 TCGA-G9-6370 TCGA-G9-6371 TCGA-G9-6373 TCGA-G9-6377 
       40.18        39.95        38.01        40.31        26.66        31.50 
TCGA-G9-6378 TCGA-G9-6379 TCGA-G9-6384 TCGA-G9-6385 TCGA-G9-6494 TCGA-G9-6496 
       37.97        45.80        25.15        27.29        58.22        56.75 
TCGA-G9-6498 TCGA-G9-6499 TCGA-G9-7510 TCGA-G9-7519 TCGA-G9-7521 TCGA-G9-7522 
       52.87        50.73        38.96        27.91        30.97        21.30 
TCGA-G9-7523 TCGA-G9-7525 TCGA-H9-7775 TCGA-H9-A6BX TCGA-H9-A6BY TCGA-HC-7075 
       28.18        32.68         6.08        18.74         3.68        19.76 
TCGA-HC-7077 TCGA-HC-7078 TCGA-HC-7079 TCGA-HC-7080 TCGA-HC-7209 TCGA-HC-7211 
       65.98         5.33         2.93         2.01         1.35         0.79 
TCGA-HC-7212 TCGA-HC-7213 TCGA-HC-7230 TCGA-HC-7231 TCGA-HC-7233 TCGA-HC-7736 
       28.60         1.97         1.68         2.37         1.71         0.72 
TCGA-HC-7737 TCGA-HC-7740 TCGA-HC-7742 TCGA-HC-7744 TCGA-HC-7747 TCGA-HC-7748 
        2.10         1.74         1.48         1.68         1.87        26.04 
TCGA-HC-7749 TCGA-HC-7750 TCGA-HC-7752 TCGA-HC-7817 TCGA-HC-7818 TCGA-HC-7821 
        1.97         1.12         3.22         1.05         1.48         1.84 
TCGA-HC-8216 TCGA-HC-8265 TCGA-HC-A48F TCGA-HC-A4ZV TCGA-HC-A632 TCGA-HC-A6AL 
       22.42        15.88         1.51         0.76         2.01         2.20 
TCGA-HC-A6AO TCGA-HC-A6AP TCGA-HC-A6AS TCGA-HC-A6HX TCGA-HC-A6HY TCGA-HI-7168 
        5.49         2.33         1.45         1.25         4.41        65.92 
TCGA-HI-7169 TCGA-HI-7170 TCGA-HI-7171 TCGA-J4-8198 TCGA-J4-8200 TCGA-J4-A67M 
       64.08        62.43        66.02        20.19        12.30        16.04 
TCGA-J4-A67N TCGA-J4-A67O TCGA-QU-A6IL TCGA-QU-A6IM TCGA-QU-A6IP 
       16.54        16.14         3.19        41.00        65.88 

  KIDINS220 MUTATED KIDINS220 WILD-TYPE 
               3.48                0.30 
  KIDINS220 MUTATED KIDINS220 WILD-TYPE 
              44.02               66.12 
  KIDINS220 MUTATED KIDINS220 WILD-TYPE 
               9.50               20.55 
[1] "3.5 - 44.0 (9.5)"  "0.3 - 66.1 (20.6)"
         TCGA-CH-5737          TCGA-CH-5738          TCGA-CH-5739 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-CH-5740          TCGA-CH-5741          TCGA-CH-5743 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-CH-5744          TCGA-CH-5745          TCGA-CH-5746 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-CH-5748          TCGA-CH-5750          TCGA-CH-5751 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-CH-5752          TCGA-CH-5753          TCGA-CH-5754 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-CH-5761          TCGA-CH-5762          TCGA-CH-5763 
"KIDINS220 WILD-TYPE"   "KIDINS220 MUTATED" "KIDINS220 WILD-TYPE" 
         TCGA-CH-5764          TCGA-CH-5765          TCGA-CH-5766 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-CH-5767          TCGA-CH-5768          TCGA-CH-5769 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-CH-5771          TCGA-CH-5772          TCGA-CH-5788 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-CH-5789          TCGA-CH-5790          TCGA-CH-5791 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-CH-5792          TCGA-CH-5794          TCGA-EJ-5494 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-EJ-5495          TCGA-EJ-5496          TCGA-EJ-5497 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-EJ-5498          TCGA-EJ-5499          TCGA-EJ-5501 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-EJ-5502          TCGA-EJ-5503          TCGA-EJ-5504 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-EJ-5505          TCGA-EJ-5506          TCGA-EJ-5507 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-EJ-5508          TCGA-EJ-5509          TCGA-EJ-5510 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-EJ-5511          TCGA-EJ-5512          TCGA-EJ-5514 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-EJ-5515          TCGA-EJ-5516          TCGA-EJ-5517 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-EJ-5518          TCGA-EJ-5519          TCGA-EJ-5521 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-EJ-5522          TCGA-EJ-5524          TCGA-EJ-5525 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-EJ-5526          TCGA-EJ-5527          TCGA-EJ-5530 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-EJ-5531          TCGA-EJ-5532          TCGA-EJ-5542 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-EJ-7115          TCGA-EJ-7123          TCGA-EJ-7125 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-EJ-7314          TCGA-EJ-7315          TCGA-EJ-7317 
"KIDINS220 WILD-TYPE"   "KIDINS220 MUTATED" "KIDINS220 WILD-TYPE" 
         TCGA-EJ-7321          TCGA-EJ-7327          TCGA-EJ-7328 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-EJ-7330          TCGA-EJ-7331          TCGA-EJ-7781 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-EJ-7782          TCGA-EJ-7783          TCGA-EJ-7784 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-EJ-7785          TCGA-EJ-7786          TCGA-EJ-7788 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-EJ-7789          TCGA-EJ-7791          TCGA-EJ-7792 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-EJ-7793          TCGA-EJ-7794          TCGA-EJ-7797 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-EJ-8468          TCGA-EJ-8469          TCGA-EJ-8470 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-EJ-8472          TCGA-EJ-8474          TCGA-EJ-A46B 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-EJ-A46D          TCGA-EJ-A46E          TCGA-EJ-A46F 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-EJ-A46G          TCGA-EJ-A46H          TCGA-EJ-A46I 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-FC-7708          TCGA-FC-7961          TCGA-FC-A4JI 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-FC-A5OB          TCGA-FC-A66V          TCGA-FC-A6HD 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-G9-6329          TCGA-G9-6332          TCGA-G9-6333 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-G9-6336          TCGA-G9-6338          TCGA-G9-6339 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-G9-6342          TCGA-G9-6343          TCGA-G9-6347 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-G9-6348          TCGA-G9-6351          TCGA-G9-6353 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-G9-6354          TCGA-G9-6356          TCGA-G9-6361 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-G9-6362          TCGA-G9-6363          TCGA-G9-6364 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-G9-6365          TCGA-G9-6366          TCGA-G9-6367 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-G9-6369          TCGA-G9-6370          TCGA-G9-6371 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-G9-6373          TCGA-G9-6377          TCGA-G9-6378 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-G9-6379          TCGA-G9-6384          TCGA-G9-6385 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-G9-6494          TCGA-G9-6496          TCGA-G9-6498 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-G9-6499          TCGA-G9-7510          TCGA-G9-7519 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-G9-7521          TCGA-G9-7522          TCGA-G9-7523 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-G9-7525          TCGA-H9-7775          TCGA-H9-A6BX 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-H9-A6BY          TCGA-HC-7075          TCGA-HC-7077 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-HC-7078          TCGA-HC-7079          TCGA-HC-7080 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-HC-7209          TCGA-HC-7211          TCGA-HC-7212 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-HC-7213          TCGA-HC-7230          TCGA-HC-7231 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-HC-7233          TCGA-HC-7736          TCGA-HC-7737 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-HC-7740          TCGA-HC-7742          TCGA-HC-7744 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-HC-7747          TCGA-HC-7748          TCGA-HC-7749 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-HC-7750          TCGA-HC-7752          TCGA-HC-7817 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-HC-7818          TCGA-HC-7821          TCGA-HC-8216 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-HC-8265          TCGA-HC-A48F          TCGA-HC-A4ZV 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-HC-A632          TCGA-HC-A6AL          TCGA-HC-A6AO 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-HC-A6AP          TCGA-HC-A6AQ          TCGA-HC-A6AS 
"KIDINS220 WILD-TYPE"   "KIDINS220 MUTATED" "KIDINS220 WILD-TYPE" 
         TCGA-HC-A6HX          TCGA-HC-A6HY          TCGA-HI-7168 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-HI-7169          TCGA-HI-7170          TCGA-HI-7171 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-J4-8198          TCGA-J4-8200          TCGA-J4-A67M 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-J4-A67N          TCGA-J4-A67O          TCGA-QU-A6IL 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-QU-A6IM          TCGA-QU-A6IP 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-CH-5737          TCGA-CH-5738          TCGA-CH-5739 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-CH-5740          TCGA-CH-5741          TCGA-CH-5743 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-CH-5744          TCGA-CH-5745          TCGA-CH-5746 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-CH-5748          TCGA-CH-5750          TCGA-CH-5751 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-CH-5752          TCGA-CH-5753          TCGA-CH-5754 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-CH-5761          TCGA-CH-5762          TCGA-CH-5763 
"KIDINS220 WILD-TYPE"   "KIDINS220 MUTATED" "KIDINS220 WILD-TYPE" 
         TCGA-CH-5764          TCGA-CH-5765          TCGA-CH-5766 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-CH-5767          TCGA-CH-5768          TCGA-CH-5769 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-CH-5771          TCGA-CH-5772          TCGA-CH-5788 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-CH-5789          TCGA-CH-5790          TCGA-CH-5791 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-CH-5792          TCGA-CH-5794          TCGA-EJ-5494 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-EJ-5495          TCGA-EJ-5496          TCGA-EJ-5497 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-EJ-5498          TCGA-EJ-5499          TCGA-EJ-5501 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-EJ-5502          TCGA-EJ-5503          TCGA-EJ-5504 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-EJ-5505          TCGA-EJ-5506          TCGA-EJ-5507 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-EJ-5508          TCGA-EJ-5509          TCGA-EJ-5510 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-EJ-5511          TCGA-EJ-5512          TCGA-EJ-5514 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-EJ-5515          TCGA-EJ-5516          TCGA-EJ-5517 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-EJ-5518          TCGA-EJ-5519          TCGA-EJ-5521 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-EJ-5522          TCGA-EJ-5524          TCGA-EJ-5525 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-EJ-5526          TCGA-EJ-5527          TCGA-EJ-5530 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-EJ-5531          TCGA-EJ-5532          TCGA-EJ-5542 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-EJ-7115          TCGA-EJ-7123          TCGA-EJ-7125 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-EJ-7314          TCGA-EJ-7315          TCGA-EJ-7317 
"KIDINS220 WILD-TYPE"   "KIDINS220 MUTATED" "KIDINS220 WILD-TYPE" 
         TCGA-EJ-7321          TCGA-EJ-7327          TCGA-EJ-7328 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-EJ-7330          TCGA-EJ-7331          TCGA-EJ-7781 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-EJ-7782          TCGA-EJ-7783          TCGA-EJ-7784 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-EJ-7785          TCGA-EJ-7786          TCGA-EJ-7788 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-EJ-7789          TCGA-EJ-7791          TCGA-EJ-7792 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-EJ-7793          TCGA-EJ-7794          TCGA-EJ-7797 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-EJ-8468          TCGA-EJ-8469          TCGA-EJ-8470 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-EJ-8472          TCGA-EJ-8474          TCGA-EJ-A46B 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-EJ-A46D          TCGA-EJ-A46E          TCGA-EJ-A46F 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-EJ-A46G          TCGA-EJ-A46H          TCGA-EJ-A46I 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-FC-7708          TCGA-FC-7961          TCGA-FC-A4JI 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-FC-A5OB          TCGA-FC-A66V          TCGA-FC-A6HD 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-G9-6329          TCGA-G9-6332          TCGA-G9-6333 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-G9-6336          TCGA-G9-6338          TCGA-G9-6339 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-G9-6342          TCGA-G9-6343          TCGA-G9-6347 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-G9-6348          TCGA-G9-6351          TCGA-G9-6353 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-G9-6354          TCGA-G9-6356          TCGA-G9-6361 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-G9-6362          TCGA-G9-6363          TCGA-G9-6364 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-G9-6365          TCGA-G9-6366          TCGA-G9-6367 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-G9-6369          TCGA-G9-6370          TCGA-G9-6371 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-G9-6373          TCGA-G9-6377          TCGA-G9-6378 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-G9-6379          TCGA-G9-6384          TCGA-G9-6385 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-G9-6494          TCGA-G9-6496          TCGA-G9-6498 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-G9-6499          TCGA-G9-7510          TCGA-G9-7519 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-G9-7521          TCGA-G9-7522          TCGA-G9-7523 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-G9-7525          TCGA-H9-7775          TCGA-H9-A6BX 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-H9-A6BY          TCGA-HC-7075          TCGA-HC-7077 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-HC-7078          TCGA-HC-7079          TCGA-HC-7080 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-HC-7209          TCGA-HC-7211          TCGA-HC-7212 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-HC-7213          TCGA-HC-7230          TCGA-HC-7231 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-HC-7233          TCGA-HC-7736          TCGA-HC-7737 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-HC-7740          TCGA-HC-7742          TCGA-HC-7744 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-HC-7747          TCGA-HC-7748          TCGA-HC-7749 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-HC-7750          TCGA-HC-7752          TCGA-HC-7817 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-HC-7818          TCGA-HC-7821          TCGA-HC-8216 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-HC-8265          TCGA-HC-A48F          TCGA-HC-A4ZV 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-HC-A632          TCGA-HC-A6AL          TCGA-HC-A6AO 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-HC-A6AP          TCGA-HC-A6AQ          TCGA-HC-A6AS 
"KIDINS220 WILD-TYPE"   "KIDINS220 MUTATED" "KIDINS220 WILD-TYPE" 
         TCGA-HC-A6HX          TCGA-HC-A6HY          TCGA-HI-7168 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-HI-7169          TCGA-HI-7170          TCGA-HI-7171 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-J4-8198          TCGA-J4-8200          TCGA-J4-A67M 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-J4-A67N          TCGA-J4-A67O          TCGA-QU-A6IL 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-QU-A6IM          TCGA-QU-A6IP 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-CH-5737          TCGA-CH-5738          TCGA-CH-5739 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-CH-5740          TCGA-CH-5741          TCGA-CH-5743 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-CH-5744          TCGA-CH-5745          TCGA-CH-5746 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-CH-5748          TCGA-CH-5750          TCGA-CH-5751 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-CH-5752          TCGA-CH-5753          TCGA-CH-5754 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-CH-5761          TCGA-CH-5762          TCGA-CH-5763 
"KIDINS220 WILD-TYPE"   "KIDINS220 MUTATED" "KIDINS220 WILD-TYPE" 
         TCGA-CH-5764          TCGA-CH-5765          TCGA-CH-5766 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-CH-5767          TCGA-CH-5768          TCGA-CH-5769 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-CH-5771          TCGA-CH-5772          TCGA-CH-5788 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-CH-5789          TCGA-CH-5790          TCGA-CH-5791 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-CH-5792          TCGA-CH-5794          TCGA-EJ-5494 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-EJ-5495          TCGA-EJ-5496          TCGA-EJ-5497 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-EJ-5498          TCGA-EJ-5499          TCGA-EJ-5501 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-EJ-5502          TCGA-EJ-5503          TCGA-EJ-5504 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-EJ-5505          TCGA-EJ-5506          TCGA-EJ-5507 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-EJ-5508          TCGA-EJ-5509          TCGA-EJ-5510 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-EJ-5511          TCGA-EJ-5512          TCGA-EJ-5514 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-EJ-5515          TCGA-EJ-5516          TCGA-EJ-5517 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-EJ-5518          TCGA-EJ-5519          TCGA-EJ-5521 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-EJ-5522          TCGA-EJ-5524          TCGA-EJ-5525 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-EJ-5526          TCGA-EJ-5527          TCGA-EJ-5530 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-EJ-5531          TCGA-EJ-5532          TCGA-EJ-5542 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-EJ-7115          TCGA-EJ-7123          TCGA-EJ-7125 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-EJ-7314          TCGA-EJ-7315          TCGA-EJ-7317 
"KIDINS220 WILD-TYPE"   "KIDINS220 MUTATED" "KIDINS220 WILD-TYPE" 
         TCGA-EJ-7321          TCGA-EJ-7327          TCGA-EJ-7328 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-EJ-7330          TCGA-EJ-7331          TCGA-EJ-7781 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-EJ-7782          TCGA-EJ-7783          TCGA-EJ-7784 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-EJ-7785          TCGA-EJ-7786          TCGA-EJ-7788 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-EJ-7789          TCGA-EJ-7791          TCGA-EJ-7792 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-EJ-7793          TCGA-EJ-7794          TCGA-EJ-7797 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-EJ-8468          TCGA-EJ-8469          TCGA-EJ-8470 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-EJ-8472          TCGA-EJ-8474          TCGA-EJ-A46B 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-EJ-A46D          TCGA-EJ-A46E          TCGA-EJ-A46F 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-EJ-A46G          TCGA-EJ-A46H          TCGA-EJ-A46I 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-FC-7708          TCGA-FC-7961          TCGA-FC-A4JI 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-FC-A5OB          TCGA-FC-A66V          TCGA-FC-A6HD 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-G9-6329          TCGA-G9-6332          TCGA-G9-6333 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-G9-6336          TCGA-G9-6338          TCGA-G9-6339 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-G9-6342          TCGA-G9-6343          TCGA-G9-6347 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-G9-6348          TCGA-G9-6351          TCGA-G9-6353 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-G9-6354          TCGA-G9-6356          TCGA-G9-6361 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-G9-6362          TCGA-G9-6363          TCGA-G9-6364 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-G9-6365          TCGA-G9-6366          TCGA-G9-6367 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-G9-6369          TCGA-G9-6370          TCGA-G9-6371 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-G9-6373          TCGA-G9-6377          TCGA-G9-6378 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-G9-6379          TCGA-G9-6384          TCGA-G9-6385 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-G9-6494          TCGA-G9-6496          TCGA-G9-6498 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-G9-6499          TCGA-G9-7510          TCGA-G9-7519 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-G9-7521          TCGA-G9-7522          TCGA-G9-7523 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-G9-7525          TCGA-H9-7775          TCGA-H9-A6BX 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-H9-A6BY          TCGA-HC-7075          TCGA-HC-7077 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-HC-7078          TCGA-HC-7079          TCGA-HC-7080 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-HC-7209          TCGA-HC-7211          TCGA-HC-7212 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-HC-7213          TCGA-HC-7230          TCGA-HC-7231 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-HC-7233          TCGA-HC-7736          TCGA-HC-7737 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-HC-7740          TCGA-HC-7742          TCGA-HC-7744 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-HC-7747          TCGA-HC-7748          TCGA-HC-7749 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-HC-7750          TCGA-HC-7752          TCGA-HC-7817 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-HC-7818          TCGA-HC-7821          TCGA-HC-8216 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-HC-8265          TCGA-HC-A48F          TCGA-HC-A4ZV 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-HC-A632          TCGA-HC-A6AL          TCGA-HC-A6AO 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-HC-A6AP          TCGA-HC-A6AQ          TCGA-HC-A6AS 
"KIDINS220 WILD-TYPE"   "KIDINS220 MUTATED" "KIDINS220 WILD-TYPE" 
         TCGA-HC-A6HX          TCGA-HC-A6HY          TCGA-HI-7168 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-HI-7169          TCGA-HI-7170          TCGA-HI-7171 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-J4-8198          TCGA-J4-8200          TCGA-J4-A67M 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-J4-A67N          TCGA-J4-A67O          TCGA-QU-A6IL 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-QU-A6IM          TCGA-QU-A6IP 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
[1] "hr=" "1"  
D1V2, continuous
                     vv
clus                   T2  T3  T4
  KIDINS220 MUTATED     1   2   0
  KIDINS220 WILD-TYPE  87 103   5
D1V3, multiclass
    clus
vv   KIDINS220 MUTATED KIDINS220 WILD-TYPE
  T2                 1                  87
  T3                 2                 103
  T4                 0                   5
D1V4, binary
                     cls
clus                    0   1
  KIDINS220 MUTATED     2   0
  KIDINS220 WILD-TYPE 152  17
[1] "tbl2"
                     cls
clus                  [,1] [,2]
  KIDINS220 MUTATED      2    0
  KIDINS220 WILD-TYPE  152   17
   clus
vv  KIDINS220 MUTATED KIDINS220 WILD-TYPE
  0                 2                 152
  1                 0                  17
                     vv
clus                   R0  R1  RX
  KIDINS220 MUTATED     2   1   0
  KIDINS220 WILD-TYPE 147  35   5
D1V5, multiclass
    clus
vv   KIDINS220 MUTATED KIDINS220 WILD-TYPE
  R0                 2                 147
  R1                 1                  35
  RX                 0                   5
D1V6, continuous
[1] "Remove cluster labels:" "KIDINS220 MUTATED"     
clus
  KIDINS220 MUTATED KIDINS220 WILD-TYPE 
                  2                 167 
         TCGA-CH-5737          TCGA-CH-5739          TCGA-CH-5740 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-CH-5741          TCGA-CH-5743          TCGA-CH-5744 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-CH-5745          TCGA-CH-5746          TCGA-CH-5748 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-CH-5750          TCGA-CH-5751          TCGA-CH-5752 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-CH-5753          TCGA-CH-5754          TCGA-CH-5761 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-CH-5763          TCGA-CH-5764          TCGA-CH-5765 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-CH-5766          TCGA-CH-5767          TCGA-CH-5768 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-CH-5769          TCGA-CH-5771          TCGA-CH-5772 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-CH-5788          TCGA-CH-5789          TCGA-CH-5790 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-CH-5791          TCGA-CH-5792          TCGA-CH-5794 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-EJ-5494          TCGA-EJ-5495          TCGA-EJ-5496 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-EJ-5497          TCGA-EJ-5498          TCGA-EJ-5499 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-EJ-5501          TCGA-EJ-5502          TCGA-EJ-5503 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-EJ-5504          TCGA-EJ-5505          TCGA-EJ-5506 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-EJ-5507          TCGA-EJ-5508          TCGA-EJ-5509 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-EJ-5510          TCGA-EJ-5511          TCGA-EJ-5512 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-EJ-5514          TCGA-EJ-5515          TCGA-EJ-5516 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-EJ-5517          TCGA-EJ-5518          TCGA-EJ-5519 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-EJ-5521          TCGA-EJ-5522          TCGA-EJ-5524 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-EJ-5525          TCGA-EJ-5526          TCGA-EJ-5527 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-EJ-5530          TCGA-EJ-5531          TCGA-EJ-5532 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-EJ-5542          TCGA-EJ-7115          TCGA-EJ-7123 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-EJ-7125          TCGA-EJ-7314          TCGA-EJ-7317 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-EJ-7321          TCGA-EJ-7327          TCGA-EJ-7328 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-EJ-7330          TCGA-EJ-7331          TCGA-EJ-7781 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-EJ-7782          TCGA-EJ-7783          TCGA-EJ-7784 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-EJ-7785          TCGA-EJ-7786          TCGA-EJ-7788 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-EJ-7789          TCGA-EJ-7791          TCGA-EJ-7792 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-EJ-7794          TCGA-EJ-7797          TCGA-EJ-8468 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-EJ-8469          TCGA-EJ-8470          TCGA-EJ-8472 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-EJ-8474          TCGA-EJ-A46B          TCGA-EJ-A46D 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-EJ-A46E          TCGA-EJ-A46F          TCGA-EJ-A46G 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-FC-7708          TCGA-FC-7961          TCGA-FC-A5OB 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-FC-A66V          TCGA-FC-A6HD          TCGA-G9-6332 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-G9-6333          TCGA-G9-6336          TCGA-G9-6338 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-G9-6339          TCGA-G9-6348          TCGA-G9-6356 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-G9-6361          TCGA-G9-6362          TCGA-G9-6363 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-G9-6364          TCGA-G9-6365          TCGA-G9-6367 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-G9-6369          TCGA-G9-6370          TCGA-G9-6377 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-G9-6379          TCGA-G9-6384          TCGA-G9-6494 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-G9-6496          TCGA-G9-6499          TCGA-G9-7510 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-G9-7521          TCGA-G9-7522          TCGA-G9-7523 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-G9-7525          TCGA-H9-A6BY          TCGA-HC-7078 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-HC-7079          TCGA-HC-7080          TCGA-HC-7209 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-HC-7211          TCGA-HC-7212          TCGA-HC-7213 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-HC-7230          TCGA-HC-7233          TCGA-HC-7736 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-HC-7737          TCGA-HC-7740          TCGA-HC-7742 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-HC-7744          TCGA-HC-7747          TCGA-HC-7748 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-HC-7749          TCGA-HC-7752          TCGA-HC-7818 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-HC-7821          TCGA-HC-8216          TCGA-HC-8265 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-HC-A48F          TCGA-HC-A4ZV          TCGA-HC-A632 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-HC-A6AL          TCGA-HC-A6AS          TCGA-HC-A6HX 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-HI-7168          TCGA-HI-7169          TCGA-HI-7170 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-HI-7171          TCGA-J4-8200          TCGA-J4-A67M 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-J4-A67N          TCGA-J4-A67O          TCGA-QU-A6IL 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-QU-A6IM          TCGA-QU-A6IP 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
D1V7, continuous
D1V8, continuous
D1V9, continuous
D1V10, continuous
D1V11, continuous
D1V12, continuous
D1V13, continuous
[1] "Remove cluster labels:" "KIDINS220 MUTATED"     
clus
  KIDINS220 MUTATED KIDINS220 WILD-TYPE 
                  2                 174 
         TCGA-CH-5737          TCGA-CH-5738          TCGA-CH-5739 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-CH-5740          TCGA-CH-5741          TCGA-CH-5743 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-CH-5744          TCGA-CH-5745          TCGA-CH-5746 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-CH-5750          TCGA-CH-5751          TCGA-CH-5752 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-CH-5753          TCGA-CH-5754          TCGA-CH-5761 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-CH-5763          TCGA-CH-5764          TCGA-CH-5765 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-CH-5766          TCGA-CH-5767          TCGA-CH-5768 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-CH-5769          TCGA-CH-5771          TCGA-CH-5772 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-CH-5788          TCGA-CH-5789          TCGA-CH-5790 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-CH-5791          TCGA-CH-5792          TCGA-CH-5794 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-EJ-5495          TCGA-EJ-5496          TCGA-EJ-5497 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-EJ-5498          TCGA-EJ-5499          TCGA-EJ-5501 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-EJ-5502          TCGA-EJ-5503          TCGA-EJ-5504 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-EJ-5505          TCGA-EJ-5506          TCGA-EJ-5507 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-EJ-5508          TCGA-EJ-5509          TCGA-EJ-5510 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-EJ-5511          TCGA-EJ-5512          TCGA-EJ-5514 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-EJ-5515          TCGA-EJ-5516          TCGA-EJ-5517 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-EJ-5518          TCGA-EJ-5519          TCGA-EJ-5521 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-EJ-5522          TCGA-EJ-5524          TCGA-EJ-5525 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-EJ-5526          TCGA-EJ-5527          TCGA-EJ-5530 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-EJ-5531          TCGA-EJ-5532          TCGA-EJ-5542 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-EJ-7115          TCGA-EJ-7123          TCGA-EJ-7125 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-EJ-7314          TCGA-EJ-7317          TCGA-EJ-7321 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-EJ-7327          TCGA-EJ-7330          TCGA-EJ-7781 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-EJ-7782          TCGA-EJ-7783          TCGA-EJ-7784 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-EJ-7785          TCGA-EJ-7786          TCGA-EJ-7788 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-EJ-7791          TCGA-EJ-7792          TCGA-EJ-7793 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-EJ-7794          TCGA-EJ-7797          TCGA-EJ-8468 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-EJ-8469          TCGA-EJ-8472          TCGA-EJ-8474 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-EJ-A46B          TCGA-EJ-A46D          TCGA-EJ-A46E 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-EJ-A46F          TCGA-EJ-A46G          TCGA-EJ-A46H 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-EJ-A46I          TCGA-FC-A5OB          TCGA-FC-A66V 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-FC-A6HD          TCGA-G9-6329          TCGA-G9-6332 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-G9-6333          TCGA-G9-6336          TCGA-G9-6338 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-G9-6339          TCGA-G9-6342          TCGA-G9-6343 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-G9-6347          TCGA-G9-6348          TCGA-G9-6351 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-G9-6353          TCGA-G9-6354          TCGA-G9-6356 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-G9-6361          TCGA-G9-6362          TCGA-G9-6363 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-G9-6364          TCGA-G9-6365          TCGA-G9-6366 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-G9-6367          TCGA-G9-6369          TCGA-G9-6370 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-G9-6371          TCGA-G9-6377          TCGA-G9-6378 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-G9-6379          TCGA-G9-6384          TCGA-G9-6385 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-G9-6494          TCGA-G9-6496          TCGA-G9-6498 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-G9-6499          TCGA-G9-7510          TCGA-G9-7519 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-G9-7521          TCGA-G9-7522          TCGA-G9-7523 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-G9-7525          TCGA-H9-7775          TCGA-H9-A6BX 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-HC-7075          TCGA-HC-7077          TCGA-HC-7078 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-HC-7079          TCGA-HC-7080          TCGA-HC-7209 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-HC-7211          TCGA-HC-7212          TCGA-HC-7213 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-HC-7230          TCGA-HC-7736          TCGA-HC-7737 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-HC-7740          TCGA-HC-7744          TCGA-HC-7747 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-HC-7748          TCGA-HC-7749          TCGA-HC-7750 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-HC-7752          TCGA-HC-7817          TCGA-HC-7818 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-HC-7821          TCGA-HC-8216          TCGA-HC-8265 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-HI-7168          TCGA-HI-7169          TCGA-HI-7170 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-HI-7171          TCGA-J4-8198          TCGA-J4-8200 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-J4-A67M          TCGA-J4-A67N          TCGA-J4-A67O 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-QU-A6IL          TCGA-QU-A6IM          TCGA-QU-A6IP 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
D1V14, continuous
[1] "Remove cluster labels:" "KIDINS220 MUTATED"     
clus
  KIDINS220 MUTATED KIDINS220 WILD-TYPE 
                  2                 174 
         TCGA-CH-5737          TCGA-CH-5738          TCGA-CH-5739 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-CH-5740          TCGA-CH-5741          TCGA-CH-5743 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-CH-5744          TCGA-CH-5745          TCGA-CH-5746 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-CH-5750          TCGA-CH-5751          TCGA-CH-5752 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-CH-5753          TCGA-CH-5754          TCGA-CH-5761 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-CH-5763          TCGA-CH-5764          TCGA-CH-5765 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-CH-5766          TCGA-CH-5767          TCGA-CH-5768 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-CH-5769          TCGA-CH-5771          TCGA-CH-5772 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-CH-5788          TCGA-CH-5789          TCGA-CH-5790 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-CH-5791          TCGA-CH-5792          TCGA-CH-5794 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-EJ-5494          TCGA-EJ-5495          TCGA-EJ-5496 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-EJ-5497          TCGA-EJ-5498          TCGA-EJ-5499 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-EJ-5501          TCGA-EJ-5502          TCGA-EJ-5503 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-EJ-5504          TCGA-EJ-5505          TCGA-EJ-5506 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-EJ-5507          TCGA-EJ-5508          TCGA-EJ-5509 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-EJ-5510          TCGA-EJ-5511          TCGA-EJ-5512 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-EJ-5514          TCGA-EJ-5515          TCGA-EJ-5516 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-EJ-5517          TCGA-EJ-5518          TCGA-EJ-5519 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-EJ-5521          TCGA-EJ-5522          TCGA-EJ-5524 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-EJ-5525          TCGA-EJ-5526          TCGA-EJ-5527 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-EJ-5530          TCGA-EJ-5531          TCGA-EJ-5532 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-EJ-5542          TCGA-EJ-7115          TCGA-EJ-7123 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-EJ-7125          TCGA-EJ-7314          TCGA-EJ-7317 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-EJ-7321          TCGA-EJ-7327          TCGA-EJ-7330 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-EJ-7781          TCGA-EJ-7782          TCGA-EJ-7783 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-EJ-7784          TCGA-EJ-7785          TCGA-EJ-7786 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-EJ-7788          TCGA-EJ-7791          TCGA-EJ-7792 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-EJ-7793          TCGA-EJ-7794          TCGA-EJ-7797 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-EJ-8468          TCGA-EJ-8469          TCGA-EJ-8472 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-EJ-8474          TCGA-EJ-A46B          TCGA-EJ-A46D 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-EJ-A46E          TCGA-EJ-A46F          TCGA-EJ-A46G 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-EJ-A46H          TCGA-EJ-A46I          TCGA-FC-A5OB 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-FC-A66V          TCGA-FC-A6HD          TCGA-G9-6329 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-G9-6332          TCGA-G9-6333          TCGA-G9-6336 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-G9-6338          TCGA-G9-6339          TCGA-G9-6342 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-G9-6343          TCGA-G9-6347          TCGA-G9-6348 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-G9-6351          TCGA-G9-6353          TCGA-G9-6354 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-G9-6356          TCGA-G9-6361          TCGA-G9-6362 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-G9-6363          TCGA-G9-6364          TCGA-G9-6365 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-G9-6366          TCGA-G9-6367          TCGA-G9-6369 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-G9-6370          TCGA-G9-6371          TCGA-G9-6377 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-G9-6378          TCGA-G9-6379          TCGA-G9-6384 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-G9-6385          TCGA-G9-6494          TCGA-G9-6496 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-G9-6498          TCGA-G9-6499          TCGA-G9-7510 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-G9-7519          TCGA-G9-7521          TCGA-G9-7522 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-G9-7523          TCGA-G9-7525          TCGA-H9-7775 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-H9-A6BX          TCGA-HC-7075          TCGA-HC-7077 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-HC-7078          TCGA-HC-7079          TCGA-HC-7080 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-HC-7209          TCGA-HC-7211          TCGA-HC-7212 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-HC-7213          TCGA-HC-7736          TCGA-HC-7737 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-HC-7740          TCGA-HC-7744          TCGA-HC-7747 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-HC-7748          TCGA-HC-7749          TCGA-HC-7750 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-HC-7752          TCGA-HC-7817          TCGA-HC-7818 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-HC-7821          TCGA-HC-8216          TCGA-HC-8265 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-HI-7168          TCGA-HI-7169          TCGA-HI-7170 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-HI-7171          TCGA-J4-8198          TCGA-J4-8200 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-J4-A67M          TCGA-J4-A67N          TCGA-J4-A67O 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 
         TCGA-QU-A6IL          TCGA-QU-A6IM          TCGA-QU-A6IP 
"KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" "KIDINS220 WILD-TYPE" 

Clustering(2) Variable = CTNNB1 MUTATION ANALYSIS
D2V1, survival
                  sevent
clus2                0   1
  CTNNB1 MUTATED     5   0
  CTNNB1 WILD-TYPE 194   1
  CTNNB1 MUTATED CTNNB1 WILD-TYPE 
               5              195 
  CTNNB1 MUTATED CTNNB1 WILD-TYPE 
               0                1 
$`CTNNB1 MUTATED`
TCGA-CH-5752 TCGA-EJ-5494 TCGA-EJ-5525 TCGA-HC-7212 TCGA-QU-A6IM 
       31.00        27.16        36.66        28.60        41.00 

$`CTNNB1 WILD-TYPE`
TCGA-CH-5737 TCGA-CH-5738 TCGA-CH-5739 TCGA-CH-5740 TCGA-CH-5741 TCGA-CH-5743 
        2.99         6.97        22.06         1.02        12.99        13.97 
TCGA-CH-5744 TCGA-CH-5745 TCGA-CH-5746 TCGA-CH-5748 TCGA-CH-5750 TCGA-CH-5751 
        1.97         2.99        24.03         1.02        13.02        35.01 
TCGA-CH-5753 TCGA-CH-5754 TCGA-CH-5761 TCGA-CH-5762 TCGA-CH-5763 TCGA-CH-5764 
        1.02         2.04         0.92        44.02        12.00         1.02 
TCGA-CH-5765 TCGA-CH-5766 TCGA-CH-5767 TCGA-CH-5768 TCGA-CH-5769 TCGA-CH-5771 
       23.01         1.02        15.06        24.03         2.04        13.02 
TCGA-CH-5772 TCGA-CH-5788 TCGA-CH-5789 TCGA-CH-5790 TCGA-CH-5791 TCGA-CH-5792 
       15.98        26.99         9.99        32.02        33.01         2.99 
TCGA-CH-5794 TCGA-EJ-5495 TCGA-EJ-5496 TCGA-EJ-5497 TCGA-EJ-5498 TCGA-EJ-5499 
       29.00        33.11        19.56        13.32        29.79        17.52 
TCGA-EJ-5501 TCGA-EJ-5502 TCGA-EJ-5503 TCGA-EJ-5504 TCGA-EJ-5505 TCGA-EJ-5506 
       30.81         8.05        23.54        28.93        30.31        27.19 
TCGA-EJ-5507 TCGA-EJ-5508 TCGA-EJ-5509 TCGA-EJ-5510 TCGA-EJ-5511 TCGA-EJ-5512 
       23.90        38.93        36.23        36.69        32.02        38.53 
TCGA-EJ-5514 TCGA-EJ-5515 TCGA-EJ-5516 TCGA-EJ-5517 TCGA-EJ-5518 TCGA-EJ-5519 
       36.23        40.77        46.55        47.80        52.27        43.92 
TCGA-EJ-5521 TCGA-EJ-5522 TCGA-EJ-5524 TCGA-EJ-5526 TCGA-EJ-5527 TCGA-EJ-5530 
       51.88        48.07        43.07        38.76        39.75        41.82 
TCGA-EJ-5531 TCGA-EJ-5532 TCGA-EJ-5542 TCGA-EJ-7115 TCGA-EJ-7123 TCGA-EJ-7125 
       30.28        47.87        29.06        27.02        49.02        61.15 
TCGA-EJ-7314 TCGA-EJ-7315 TCGA-EJ-7317 TCGA-EJ-7321 TCGA-EJ-7327 TCGA-EJ-7328 
        9.70         9.50         9.37         7.66         5.75         5.59 
TCGA-EJ-7330 TCGA-EJ-7331 TCGA-EJ-7781 TCGA-EJ-7782 TCGA-EJ-7783 TCGA-EJ-7784 
        6.28         0.30         5.56         2.10         4.31         5.49 
TCGA-EJ-7785 TCGA-EJ-7786 TCGA-EJ-7788 TCGA-EJ-7789 TCGA-EJ-7791 TCGA-EJ-7792 
       20.55        14.53         1.71        18.15        19.59        17.29 
TCGA-EJ-7793 TCGA-EJ-7794 TCGA-EJ-7797 TCGA-EJ-8468 TCGA-EJ-8469 TCGA-EJ-8470 
        1.41        23.05        12.13        64.47        63.98        26.99 
TCGA-EJ-8472 TCGA-EJ-8474 TCGA-EJ-A46B TCGA-EJ-A46D TCGA-EJ-A46E TCGA-EJ-A46F 
       66.12        10.32         5.33         4.24        17.49         9.83 
TCGA-EJ-A46G TCGA-EJ-A46H TCGA-EJ-A46I TCGA-FC-7708 TCGA-FC-7961 TCGA-FC-A4JI 
        3.06         7.53        21.96        28.41        15.42        13.45 
TCGA-FC-A5OB TCGA-FC-A66V TCGA-FC-A6HD TCGA-G9-6329 TCGA-G9-6332 TCGA-G9-6333 
        8.98        17.23         1.78        41.62        65.92        65.95 
TCGA-G9-6336 TCGA-G9-6338 TCGA-G9-6339 TCGA-G9-6342 TCGA-G9-6343 TCGA-G9-6347 
       65.98        65.98        65.98        55.76        18.21        56.48 
TCGA-G9-6348 TCGA-G9-6351 TCGA-G9-6353 TCGA-G9-6354 TCGA-G9-6356 TCGA-G9-6361 
       49.81        46.16        50.70        49.35        47.15        46.52 
TCGA-G9-6362 TCGA-G9-6363 TCGA-G9-6364 TCGA-G9-6365 TCGA-G9-6366 TCGA-G9-6367 
       47.44        45.30        39.39        44.81         3.32        40.18 
TCGA-G9-6369 TCGA-G9-6370 TCGA-G9-6371 TCGA-G9-6373 TCGA-G9-6377 TCGA-G9-6378 
       39.95        38.01        40.31        26.66        31.50        37.97 
TCGA-G9-6379 TCGA-G9-6384 TCGA-G9-6385 TCGA-G9-6494 TCGA-G9-6496 TCGA-G9-6498 
       45.80        25.15        27.29        58.22        56.75        52.87 
TCGA-G9-6499 TCGA-G9-7510 TCGA-G9-7519 TCGA-G9-7521 TCGA-G9-7522 TCGA-G9-7523 
       50.73        38.96        27.91        30.97        21.30        28.18 
TCGA-G9-7525 TCGA-H9-7775 TCGA-H9-A6BX TCGA-H9-A6BY TCGA-HC-7075 TCGA-HC-7077 
       32.68         6.08        18.74         3.68        19.76        65.98 
TCGA-HC-7078 TCGA-HC-7079 TCGA-HC-7080 TCGA-HC-7209 TCGA-HC-7211 TCGA-HC-7213 
        5.33         2.93         2.01         1.35         0.79         1.97 
TCGA-HC-7230 TCGA-HC-7231 TCGA-HC-7233 TCGA-HC-7736 TCGA-HC-7737 TCGA-HC-7740 
        1.68         2.37         1.71         0.72         2.10         1.74 
TCGA-HC-7742 TCGA-HC-7744 TCGA-HC-7747 TCGA-HC-7748 TCGA-HC-7749 TCGA-HC-7750 
        1.48         1.68         1.87        26.04         1.97         1.12 
TCGA-HC-7752 TCGA-HC-7817 TCGA-HC-7818 TCGA-HC-7821 TCGA-HC-8216 TCGA-HC-8265 
        3.22         1.05         1.48         1.84        22.42        15.88 
TCGA-HC-A48F TCGA-HC-A4ZV TCGA-HC-A632 TCGA-HC-A6AL TCGA-HC-A6AO TCGA-HC-A6AP 
        1.51         0.76         2.01         2.20         5.49         2.33 
TCGA-HC-A6AQ TCGA-HC-A6AS TCGA-HC-A6HX TCGA-HC-A6HY TCGA-HI-7168 TCGA-HI-7169 
        3.48         1.45         1.25         4.41        65.92        64.08 
TCGA-HI-7170 TCGA-HI-7171 TCGA-J4-8198 TCGA-J4-8200 TCGA-J4-A67M TCGA-J4-A67N 
       62.43        66.02        20.19        12.30        16.04        16.54 
TCGA-J4-A67O TCGA-QU-A6IL TCGA-QU-A6IP 
       16.14         3.19        65.88 

  CTNNB1 MUTATED CTNNB1 WILD-TYPE 
           27.16             0.30 
  CTNNB1 MUTATED CTNNB1 WILD-TYPE 
           41.00            66.12 
  CTNNB1 MUTATED CTNNB1 WILD-TYPE 
           31.00            19.59 
[1] "27.2 - 41.0 (31.0)" "0.3 - 66.1 (19.6)" 
      TCGA-CH-5737       TCGA-CH-5738       TCGA-CH-5739       TCGA-CH-5740 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-CH-5741       TCGA-CH-5743       TCGA-CH-5744       TCGA-CH-5745 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-CH-5746       TCGA-CH-5748       TCGA-CH-5750       TCGA-CH-5751 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-CH-5752       TCGA-CH-5753       TCGA-CH-5754       TCGA-CH-5761 
  "CTNNB1 MUTATED" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-CH-5762       TCGA-CH-5763       TCGA-CH-5764       TCGA-CH-5765 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-CH-5766       TCGA-CH-5767       TCGA-CH-5768       TCGA-CH-5769 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-CH-5771       TCGA-CH-5772       TCGA-CH-5788       TCGA-CH-5789 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-CH-5790       TCGA-CH-5791       TCGA-CH-5792       TCGA-CH-5794 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-EJ-5494       TCGA-EJ-5495       TCGA-EJ-5496       TCGA-EJ-5497 
  "CTNNB1 MUTATED" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-EJ-5498       TCGA-EJ-5499       TCGA-EJ-5501       TCGA-EJ-5502 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-EJ-5503       TCGA-EJ-5504       TCGA-EJ-5505       TCGA-EJ-5506 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-EJ-5507       TCGA-EJ-5508       TCGA-EJ-5509       TCGA-EJ-5510 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-EJ-5511       TCGA-EJ-5512       TCGA-EJ-5514       TCGA-EJ-5515 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-EJ-5516       TCGA-EJ-5517       TCGA-EJ-5518       TCGA-EJ-5519 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-EJ-5521       TCGA-EJ-5522       TCGA-EJ-5524       TCGA-EJ-5525 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE"   "CTNNB1 MUTATED" 
      TCGA-EJ-5526       TCGA-EJ-5527       TCGA-EJ-5530       TCGA-EJ-5531 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-EJ-5532       TCGA-EJ-5542       TCGA-EJ-7115       TCGA-EJ-7123 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-EJ-7125       TCGA-EJ-7314       TCGA-EJ-7315       TCGA-EJ-7317 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-EJ-7321       TCGA-EJ-7327       TCGA-EJ-7328       TCGA-EJ-7330 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-EJ-7331       TCGA-EJ-7781       TCGA-EJ-7782       TCGA-EJ-7783 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-EJ-7784       TCGA-EJ-7785       TCGA-EJ-7786       TCGA-EJ-7788 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-EJ-7789       TCGA-EJ-7791       TCGA-EJ-7792       TCGA-EJ-7793 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-EJ-7794       TCGA-EJ-7797       TCGA-EJ-8468       TCGA-EJ-8469 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-EJ-8470       TCGA-EJ-8472       TCGA-EJ-8474       TCGA-EJ-A46B 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-EJ-A46D       TCGA-EJ-A46E       TCGA-EJ-A46F       TCGA-EJ-A46G 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-EJ-A46H       TCGA-EJ-A46I       TCGA-FC-7708       TCGA-FC-7961 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-FC-A4JI       TCGA-FC-A5OB       TCGA-FC-A66V       TCGA-FC-A6HD 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-G9-6329       TCGA-G9-6332       TCGA-G9-6333       TCGA-G9-6336 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-G9-6338       TCGA-G9-6339       TCGA-G9-6342       TCGA-G9-6343 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-G9-6347       TCGA-G9-6348       TCGA-G9-6351       TCGA-G9-6353 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-G9-6354       TCGA-G9-6356       TCGA-G9-6361       TCGA-G9-6362 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-G9-6363       TCGA-G9-6364       TCGA-G9-6365       TCGA-G9-6366 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-G9-6367       TCGA-G9-6369       TCGA-G9-6370       TCGA-G9-6371 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-G9-6373       TCGA-G9-6377       TCGA-G9-6378       TCGA-G9-6379 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-G9-6384       TCGA-G9-6385       TCGA-G9-6494       TCGA-G9-6496 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-G9-6498       TCGA-G9-6499       TCGA-G9-7510       TCGA-G9-7519 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-G9-7521       TCGA-G9-7522       TCGA-G9-7523       TCGA-G9-7525 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-H9-7775       TCGA-H9-A6BX       TCGA-H9-A6BY       TCGA-HC-7075 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-HC-7077       TCGA-HC-7078       TCGA-HC-7079       TCGA-HC-7080 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-HC-7209       TCGA-HC-7211       TCGA-HC-7212       TCGA-HC-7213 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE"   "CTNNB1 MUTATED" "CTNNB1 WILD-TYPE" 
      TCGA-HC-7230       TCGA-HC-7231       TCGA-HC-7233       TCGA-HC-7736 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-HC-7737       TCGA-HC-7740       TCGA-HC-7742       TCGA-HC-7744 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-HC-7747       TCGA-HC-7748       TCGA-HC-7749       TCGA-HC-7750 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-HC-7752       TCGA-HC-7817       TCGA-HC-7818       TCGA-HC-7821 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-HC-8216       TCGA-HC-8265       TCGA-HC-A48F       TCGA-HC-A4ZV 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-HC-A632       TCGA-HC-A6AL       TCGA-HC-A6AO       TCGA-HC-A6AP 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-HC-A6AQ       TCGA-HC-A6AS       TCGA-HC-A6HX       TCGA-HC-A6HY 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-HI-7168       TCGA-HI-7169       TCGA-HI-7170       TCGA-HI-7171 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-J4-8198       TCGA-J4-8200       TCGA-J4-A67M       TCGA-J4-A67N 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-J4-A67O       TCGA-QU-A6IL       TCGA-QU-A6IM       TCGA-QU-A6IP 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE"   "CTNNB1 MUTATED" "CTNNB1 WILD-TYPE" 
      TCGA-CH-5737       TCGA-CH-5738       TCGA-CH-5739       TCGA-CH-5740 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-CH-5741       TCGA-CH-5743       TCGA-CH-5744       TCGA-CH-5745 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-CH-5746       TCGA-CH-5748       TCGA-CH-5750       TCGA-CH-5751 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-CH-5752       TCGA-CH-5753       TCGA-CH-5754       TCGA-CH-5761 
  "CTNNB1 MUTATED" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-CH-5762       TCGA-CH-5763       TCGA-CH-5764       TCGA-CH-5765 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-CH-5766       TCGA-CH-5767       TCGA-CH-5768       TCGA-CH-5769 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-CH-5771       TCGA-CH-5772       TCGA-CH-5788       TCGA-CH-5789 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-CH-5790       TCGA-CH-5791       TCGA-CH-5792       TCGA-CH-5794 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-EJ-5494       TCGA-EJ-5495       TCGA-EJ-5496       TCGA-EJ-5497 
  "CTNNB1 MUTATED" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-EJ-5498       TCGA-EJ-5499       TCGA-EJ-5501       TCGA-EJ-5502 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-EJ-5503       TCGA-EJ-5504       TCGA-EJ-5505       TCGA-EJ-5506 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-EJ-5507       TCGA-EJ-5508       TCGA-EJ-5509       TCGA-EJ-5510 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-EJ-5511       TCGA-EJ-5512       TCGA-EJ-5514       TCGA-EJ-5515 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-EJ-5516       TCGA-EJ-5517       TCGA-EJ-5518       TCGA-EJ-5519 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-EJ-5521       TCGA-EJ-5522       TCGA-EJ-5524       TCGA-EJ-5525 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE"   "CTNNB1 MUTATED" 
      TCGA-EJ-5526       TCGA-EJ-5527       TCGA-EJ-5530       TCGA-EJ-5531 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-EJ-5532       TCGA-EJ-5542       TCGA-EJ-7115       TCGA-EJ-7123 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-EJ-7125       TCGA-EJ-7314       TCGA-EJ-7315       TCGA-EJ-7317 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-EJ-7321       TCGA-EJ-7327       TCGA-EJ-7328       TCGA-EJ-7330 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-EJ-7331       TCGA-EJ-7781       TCGA-EJ-7782       TCGA-EJ-7783 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-EJ-7784       TCGA-EJ-7785       TCGA-EJ-7786       TCGA-EJ-7788 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-EJ-7789       TCGA-EJ-7791       TCGA-EJ-7792       TCGA-EJ-7793 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-EJ-7794       TCGA-EJ-7797       TCGA-EJ-8468       TCGA-EJ-8469 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-EJ-8470       TCGA-EJ-8472       TCGA-EJ-8474       TCGA-EJ-A46B 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-EJ-A46D       TCGA-EJ-A46E       TCGA-EJ-A46F       TCGA-EJ-A46G 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-EJ-A46H       TCGA-EJ-A46I       TCGA-FC-7708       TCGA-FC-7961 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-FC-A4JI       TCGA-FC-A5OB       TCGA-FC-A66V       TCGA-FC-A6HD 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-G9-6329       TCGA-G9-6332       TCGA-G9-6333       TCGA-G9-6336 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-G9-6338       TCGA-G9-6339       TCGA-G9-6342       TCGA-G9-6343 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-G9-6347       TCGA-G9-6348       TCGA-G9-6351       TCGA-G9-6353 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-G9-6354       TCGA-G9-6356       TCGA-G9-6361       TCGA-G9-6362 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-G9-6363       TCGA-G9-6364       TCGA-G9-6365       TCGA-G9-6366 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-G9-6367       TCGA-G9-6369       TCGA-G9-6370       TCGA-G9-6371 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-G9-6373       TCGA-G9-6377       TCGA-G9-6378       TCGA-G9-6379 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-G9-6384       TCGA-G9-6385       TCGA-G9-6494       TCGA-G9-6496 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-G9-6498       TCGA-G9-6499       TCGA-G9-7510       TCGA-G9-7519 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-G9-7521       TCGA-G9-7522       TCGA-G9-7523       TCGA-G9-7525 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-H9-7775       TCGA-H9-A6BX       TCGA-H9-A6BY       TCGA-HC-7075 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-HC-7077       TCGA-HC-7078       TCGA-HC-7079       TCGA-HC-7080 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-HC-7209       TCGA-HC-7211       TCGA-HC-7212       TCGA-HC-7213 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE"   "CTNNB1 MUTATED" "CTNNB1 WILD-TYPE" 
      TCGA-HC-7230       TCGA-HC-7231       TCGA-HC-7233       TCGA-HC-7736 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-HC-7737       TCGA-HC-7740       TCGA-HC-7742       TCGA-HC-7744 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-HC-7747       TCGA-HC-7748       TCGA-HC-7749       TCGA-HC-7750 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-HC-7752       TCGA-HC-7817       TCGA-HC-7818       TCGA-HC-7821 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-HC-8216       TCGA-HC-8265       TCGA-HC-A48F       TCGA-HC-A4ZV 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-HC-A632       TCGA-HC-A6AL       TCGA-HC-A6AO       TCGA-HC-A6AP 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-HC-A6AQ       TCGA-HC-A6AS       TCGA-HC-A6HX       TCGA-HC-A6HY 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-HI-7168       TCGA-HI-7169       TCGA-HI-7170       TCGA-HI-7171 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-J4-8198       TCGA-J4-8200       TCGA-J4-A67M       TCGA-J4-A67N 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-J4-A67O       TCGA-QU-A6IL       TCGA-QU-A6IM       TCGA-QU-A6IP 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE"   "CTNNB1 MUTATED" "CTNNB1 WILD-TYPE" 
      TCGA-CH-5737       TCGA-CH-5738       TCGA-CH-5739       TCGA-CH-5740 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-CH-5741       TCGA-CH-5743       TCGA-CH-5744       TCGA-CH-5745 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-CH-5746       TCGA-CH-5748       TCGA-CH-5750       TCGA-CH-5751 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-CH-5752       TCGA-CH-5753       TCGA-CH-5754       TCGA-CH-5761 
  "CTNNB1 MUTATED" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-CH-5762       TCGA-CH-5763       TCGA-CH-5764       TCGA-CH-5765 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-CH-5766       TCGA-CH-5767       TCGA-CH-5768       TCGA-CH-5769 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-CH-5771       TCGA-CH-5772       TCGA-CH-5788       TCGA-CH-5789 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-CH-5790       TCGA-CH-5791       TCGA-CH-5792       TCGA-CH-5794 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-EJ-5494       TCGA-EJ-5495       TCGA-EJ-5496       TCGA-EJ-5497 
  "CTNNB1 MUTATED" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-EJ-5498       TCGA-EJ-5499       TCGA-EJ-5501       TCGA-EJ-5502 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-EJ-5503       TCGA-EJ-5504       TCGA-EJ-5505       TCGA-EJ-5506 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-EJ-5507       TCGA-EJ-5508       TCGA-EJ-5509       TCGA-EJ-5510 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-EJ-5511       TCGA-EJ-5512       TCGA-EJ-5514       TCGA-EJ-5515 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-EJ-5516       TCGA-EJ-5517       TCGA-EJ-5518       TCGA-EJ-5519 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-EJ-5521       TCGA-EJ-5522       TCGA-EJ-5524       TCGA-EJ-5525 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE"   "CTNNB1 MUTATED" 
      TCGA-EJ-5526       TCGA-EJ-5527       TCGA-EJ-5530       TCGA-EJ-5531 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-EJ-5532       TCGA-EJ-5542       TCGA-EJ-7115       TCGA-EJ-7123 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-EJ-7125       TCGA-EJ-7314       TCGA-EJ-7315       TCGA-EJ-7317 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-EJ-7321       TCGA-EJ-7327       TCGA-EJ-7328       TCGA-EJ-7330 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-EJ-7331       TCGA-EJ-7781       TCGA-EJ-7782       TCGA-EJ-7783 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-EJ-7784       TCGA-EJ-7785       TCGA-EJ-7786       TCGA-EJ-7788 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-EJ-7789       TCGA-EJ-7791       TCGA-EJ-7792       TCGA-EJ-7793 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-EJ-7794       TCGA-EJ-7797       TCGA-EJ-8468       TCGA-EJ-8469 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-EJ-8470       TCGA-EJ-8472       TCGA-EJ-8474       TCGA-EJ-A46B 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-EJ-A46D       TCGA-EJ-A46E       TCGA-EJ-A46F       TCGA-EJ-A46G 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-EJ-A46H       TCGA-EJ-A46I       TCGA-FC-7708       TCGA-FC-7961 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-FC-A4JI       TCGA-FC-A5OB       TCGA-FC-A66V       TCGA-FC-A6HD 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-G9-6329       TCGA-G9-6332       TCGA-G9-6333       TCGA-G9-6336 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-G9-6338       TCGA-G9-6339       TCGA-G9-6342       TCGA-G9-6343 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-G9-6347       TCGA-G9-6348       TCGA-G9-6351       TCGA-G9-6353 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-G9-6354       TCGA-G9-6356       TCGA-G9-6361       TCGA-G9-6362 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-G9-6363       TCGA-G9-6364       TCGA-G9-6365       TCGA-G9-6366 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-G9-6367       TCGA-G9-6369       TCGA-G9-6370       TCGA-G9-6371 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-G9-6373       TCGA-G9-6377       TCGA-G9-6378       TCGA-G9-6379 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-G9-6384       TCGA-G9-6385       TCGA-G9-6494       TCGA-G9-6496 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-G9-6498       TCGA-G9-6499       TCGA-G9-7510       TCGA-G9-7519 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-G9-7521       TCGA-G9-7522       TCGA-G9-7523       TCGA-G9-7525 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-H9-7775       TCGA-H9-A6BX       TCGA-H9-A6BY       TCGA-HC-7075 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-HC-7077       TCGA-HC-7078       TCGA-HC-7079       TCGA-HC-7080 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-HC-7209       TCGA-HC-7211       TCGA-HC-7212       TCGA-HC-7213 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE"   "CTNNB1 MUTATED" "CTNNB1 WILD-TYPE" 
      TCGA-HC-7230       TCGA-HC-7231       TCGA-HC-7233       TCGA-HC-7736 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-HC-7737       TCGA-HC-7740       TCGA-HC-7742       TCGA-HC-7744 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-HC-7747       TCGA-HC-7748       TCGA-HC-7749       TCGA-HC-7750 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-HC-7752       TCGA-HC-7817       TCGA-HC-7818       TCGA-HC-7821 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-HC-8216       TCGA-HC-8265       TCGA-HC-A48F       TCGA-HC-A4ZV 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-HC-A632       TCGA-HC-A6AL       TCGA-HC-A6AO       TCGA-HC-A6AP 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-HC-A6AQ       TCGA-HC-A6AS       TCGA-HC-A6HX       TCGA-HC-A6HY 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-HI-7168       TCGA-HI-7169       TCGA-HI-7170       TCGA-HI-7171 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-J4-8198       TCGA-J4-8200       TCGA-J4-A67M       TCGA-J4-A67N 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-J4-A67O       TCGA-QU-A6IL       TCGA-QU-A6IM       TCGA-QU-A6IP 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE"   "CTNNB1 MUTATED" "CTNNB1 WILD-TYPE" 
[1] "hr=" "1"  
D2V2, continuous
                  vv
clus                T2  T3  T4
  CTNNB1 MUTATED     3   2   0
  CTNNB1 WILD-TYPE  85 103   5
D2V3, multiclass
    clus
vv   CTNNB1 MUTATED CTNNB1 WILD-TYPE
  T2              3               85
  T3              2              103
  T4              0                5
D2V4, binary
                  cls
clus                 0   1
  CTNNB1 MUTATED     5   0
  CTNNB1 WILD-TYPE 149  17
[1] "tbl2"
                  cls
clus               [,1] [,2]
  CTNNB1 MUTATED      5    0
  CTNNB1 WILD-TYPE  149   17
   clus
vv  CTNNB1 MUTATED CTNNB1 WILD-TYPE
  0              5              149
  1              0               17
                  vv
clus                R0  R1  RX
  CTNNB1 MUTATED     4   0   0
  CTNNB1 WILD-TYPE 145  36   5
D2V5, multiclass
    clus
vv   CTNNB1 MUTATED CTNNB1 WILD-TYPE
  R0              4              145
  R1              0               36
  RX              0                5
D2V6, continuous
D2V7, continuous
D2V8, continuous
D2V9, continuous
D2V10, continuous
D2V11, continuous
D2V12, continuous
D2V13, continuous
D2V14, continuous

Clustering(3) Variable = SPOP MUTATION ANALYSIS
D3V1, survival
                sevent
clus2              0   1
  SPOP MUTATED    17   0
  SPOP WILD-TYPE 182   1
  SPOP MUTATED SPOP WILD-TYPE 
            17            183 
  SPOP MUTATED SPOP WILD-TYPE 
             0              1 
$`SPOP MUTATED`
TCGA-CH-5788 TCGA-EJ-5505 TCGA-EJ-5509 TCGA-EJ-5531 TCGA-EJ-7115 TCGA-EJ-7123 
       26.99        30.31        36.23        30.28        27.02        49.02 
TCGA-EJ-7330 TCGA-EJ-7782 TCGA-EJ-8468 TCGA-FC-7961 TCGA-G9-6333 TCGA-G9-6338 
        6.28         2.10        64.47        15.42        65.95        65.98 
TCGA-G9-6369 TCGA-G9-7510 TCGA-HC-7080 TCGA-HC-A6AP TCGA-QU-A6IM 
       39.95        38.96         2.01         2.33        41.00 

$`SPOP WILD-TYPE`
TCGA-CH-5737 TCGA-CH-5738 TCGA-CH-5739 TCGA-CH-5740 TCGA-CH-5741 TCGA-CH-5743 
        2.99         6.97        22.06         1.02        12.99        13.97 
TCGA-CH-5744 TCGA-CH-5745 TCGA-CH-5746 TCGA-CH-5748 TCGA-CH-5750 TCGA-CH-5751 
        1.97         2.99        24.03         1.02        13.02        35.01 
TCGA-CH-5752 TCGA-CH-5753 TCGA-CH-5754 TCGA-CH-5761 TCGA-CH-5762 TCGA-CH-5763 
       31.00         1.02         2.04         0.92        44.02        12.00 
TCGA-CH-5764 TCGA-CH-5765 TCGA-CH-5766 TCGA-CH-5767 TCGA-CH-5768 TCGA-CH-5769 
        1.02        23.01         1.02        15.06        24.03         2.04 
TCGA-CH-5771 TCGA-CH-5772 TCGA-CH-5789 TCGA-CH-5790 TCGA-CH-5791 TCGA-CH-5792 
       13.02        15.98         9.99        32.02        33.01         2.99 
TCGA-CH-5794 TCGA-EJ-5494 TCGA-EJ-5495 TCGA-EJ-5496 TCGA-EJ-5497 TCGA-EJ-5498 
       29.00        27.16        33.11        19.56        13.32        29.79 
TCGA-EJ-5499 TCGA-EJ-5501 TCGA-EJ-5502 TCGA-EJ-5503 TCGA-EJ-5504 TCGA-EJ-5506 
       17.52        30.81         8.05        23.54        28.93        27.19 
TCGA-EJ-5507 TCGA-EJ-5508 TCGA-EJ-5510 TCGA-EJ-5511 TCGA-EJ-5512 TCGA-EJ-5514 
       23.90        38.93        36.69        32.02        38.53        36.23 
TCGA-EJ-5515 TCGA-EJ-5516 TCGA-EJ-5517 TCGA-EJ-5518 TCGA-EJ-5519 TCGA-EJ-5521 
       40.77        46.55        47.80        52.27        43.92        51.88 
TCGA-EJ-5522 TCGA-EJ-5524 TCGA-EJ-5525 TCGA-EJ-5526 TCGA-EJ-5527 TCGA-EJ-5530 
       48.07        43.07        36.66        38.76        39.75        41.82 
TCGA-EJ-5532 TCGA-EJ-5542 TCGA-EJ-7125 TCGA-EJ-7314 TCGA-EJ-7315 TCGA-EJ-7317 
       47.87        29.06        61.15         9.70         9.50         9.37 
TCGA-EJ-7321 TCGA-EJ-7327 TCGA-EJ-7328 TCGA-EJ-7331 TCGA-EJ-7781 TCGA-EJ-7783 
        7.66         5.75         5.59         0.30         5.56         4.31 
TCGA-EJ-7784 TCGA-EJ-7785 TCGA-EJ-7786 TCGA-EJ-7788 TCGA-EJ-7789 TCGA-EJ-7791 
        5.49        20.55        14.53         1.71        18.15        19.59 
TCGA-EJ-7792 TCGA-EJ-7793 TCGA-EJ-7794 TCGA-EJ-7797 TCGA-EJ-8469 TCGA-EJ-8470 
       17.29         1.41        23.05        12.13        63.98        26.99 
TCGA-EJ-8472 TCGA-EJ-8474 TCGA-EJ-A46B TCGA-EJ-A46D TCGA-EJ-A46E TCGA-EJ-A46F 
       66.12        10.32         5.33         4.24        17.49         9.83 
TCGA-EJ-A46G TCGA-EJ-A46H TCGA-EJ-A46I TCGA-FC-7708 TCGA-FC-A4JI TCGA-FC-A5OB 
        3.06         7.53        21.96        28.41        13.45         8.98 
TCGA-FC-A66V TCGA-FC-A6HD TCGA-G9-6329 TCGA-G9-6332 TCGA-G9-6336 TCGA-G9-6339 
       17.23         1.78        41.62        65.92        65.98        65.98 
TCGA-G9-6342 TCGA-G9-6343 TCGA-G9-6347 TCGA-G9-6348 TCGA-G9-6351 TCGA-G9-6353 
       55.76        18.21        56.48        49.81        46.16        50.70 
TCGA-G9-6354 TCGA-G9-6356 TCGA-G9-6361 TCGA-G9-6362 TCGA-G9-6363 TCGA-G9-6364 
       49.35        47.15        46.52        47.44        45.30        39.39 
TCGA-G9-6365 TCGA-G9-6366 TCGA-G9-6367 TCGA-G9-6370 TCGA-G9-6371 TCGA-G9-6373 
       44.81         3.32        40.18        38.01        40.31        26.66 
TCGA-G9-6377 TCGA-G9-6378 TCGA-G9-6379 TCGA-G9-6384 TCGA-G9-6385 TCGA-G9-6494 
       31.50        37.97        45.80        25.15        27.29        58.22 
TCGA-G9-6496 TCGA-G9-6498 TCGA-G9-6499 TCGA-G9-7519 TCGA-G9-7521 TCGA-G9-7522 
       56.75        52.87        50.73        27.91        30.97        21.30 
TCGA-G9-7523 TCGA-G9-7525 TCGA-H9-7775 TCGA-H9-A6BX TCGA-H9-A6BY TCGA-HC-7075 
       28.18        32.68         6.08        18.74         3.68        19.76 
TCGA-HC-7077 TCGA-HC-7078 TCGA-HC-7079 TCGA-HC-7209 TCGA-HC-7211 TCGA-HC-7212 
       65.98         5.33         2.93         1.35         0.79        28.60 
TCGA-HC-7213 TCGA-HC-7230 TCGA-HC-7231 TCGA-HC-7233 TCGA-HC-7736 TCGA-HC-7737 
        1.97         1.68         2.37         1.71         0.72         2.10 
TCGA-HC-7740 TCGA-HC-7742 TCGA-HC-7744 TCGA-HC-7747 TCGA-HC-7748 TCGA-HC-7749 
        1.74         1.48         1.68         1.87        26.04         1.97 
TCGA-HC-7750 TCGA-HC-7752 TCGA-HC-7817 TCGA-HC-7818 TCGA-HC-7821 TCGA-HC-8216 
        1.12         3.22         1.05         1.48         1.84        22.42 
TCGA-HC-8265 TCGA-HC-A48F TCGA-HC-A4ZV TCGA-HC-A632 TCGA-HC-A6AL TCGA-HC-A6AO 
       15.88         1.51         0.76         2.01         2.20         5.49 
TCGA-HC-A6AQ TCGA-HC-A6AS TCGA-HC-A6HX TCGA-HC-A6HY TCGA-HI-7168 TCGA-HI-7169 
        3.48         1.45         1.25         4.41        65.92        64.08 
TCGA-HI-7170 TCGA-HI-7171 TCGA-J4-8198 TCGA-J4-8200 TCGA-J4-A67M TCGA-J4-A67N 
       62.43        66.02        20.19        12.30        16.04        16.54 
TCGA-J4-A67O TCGA-QU-A6IL TCGA-QU-A6IP 
       16.14         3.19        65.88 

  SPOP MUTATED SPOP WILD-TYPE 
          2.01           0.30 
  SPOP MUTATED SPOP WILD-TYPE 
         65.98          66.12 
  SPOP MUTATED SPOP WILD-TYPE 
         30.31          19.56 
[1] "2.0 - 66.0 (30.3)" "0.3 - 66.1 (19.6)"
    TCGA-CH-5737     TCGA-CH-5738     TCGA-CH-5739     TCGA-CH-5740 
"SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" 
    TCGA-CH-5741     TCGA-CH-5743     TCGA-CH-5744     TCGA-CH-5745 
"SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" 
    TCGA-CH-5746     TCGA-CH-5748     TCGA-CH-5750     TCGA-CH-5751 
"SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" 
    TCGA-CH-5752     TCGA-CH-5753     TCGA-CH-5754     TCGA-CH-5761 
"SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" 
    TCGA-CH-5762     TCGA-CH-5763     TCGA-CH-5764     TCGA-CH-5765 
"SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" 
    TCGA-CH-5766     TCGA-CH-5767     TCGA-CH-5768     TCGA-CH-5769 
"SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" 
    TCGA-CH-5771     TCGA-CH-5772     TCGA-CH-5788     TCGA-CH-5789 
"SPOP WILD-TYPE" "SPOP WILD-TYPE"   "SPOP MUTATED" "SPOP WILD-TYPE" 
    TCGA-CH-5790     TCGA-CH-5791     TCGA-CH-5792     TCGA-CH-5794 
"SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" 
    TCGA-EJ-5494     TCGA-EJ-5495     TCGA-EJ-5496     TCGA-EJ-5497 
"SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" 
    TCGA-EJ-5498     TCGA-EJ-5499     TCGA-EJ-5501     TCGA-EJ-5502 
"SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" 
    TCGA-EJ-5503     TCGA-EJ-5504     TCGA-EJ-5505     TCGA-EJ-5506 
"SPOP WILD-TYPE" "SPOP WILD-TYPE"   "SPOP MUTATED" "SPOP WILD-TYPE" 
    TCGA-EJ-5507     TCGA-EJ-5508     TCGA-EJ-5509     TCGA-EJ-5510 
"SPOP WILD-TYPE" "SPOP WILD-TYPE"   "SPOP MUTATED" "SPOP WILD-TYPE" 
    TCGA-EJ-5511     TCGA-EJ-5512     TCGA-EJ-5514     TCGA-EJ-5515 
"SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" 
    TCGA-EJ-5516     TCGA-EJ-5517     TCGA-EJ-5518     TCGA-EJ-5519 
"SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" 
    TCGA-EJ-5521     TCGA-EJ-5522     TCGA-EJ-5524     TCGA-EJ-5525 
"SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" 
    TCGA-EJ-5526     TCGA-EJ-5527     TCGA-EJ-5530     TCGA-EJ-5531 
"SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE"   "SPOP MUTATED" 
    TCGA-EJ-5532     TCGA-EJ-5542     TCGA-EJ-7115     TCGA-EJ-7123 
"SPOP WILD-TYPE" "SPOP WILD-TYPE"   "SPOP MUTATED"   "SPOP MUTATED" 
    TCGA-EJ-7125     TCGA-EJ-7314     TCGA-EJ-7315     TCGA-EJ-7317 
"SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" 
    TCGA-EJ-7321     TCGA-EJ-7327     TCGA-EJ-7328     TCGA-EJ-7330 
"SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE"   "SPOP MUTATED" 
    TCGA-EJ-7331     TCGA-EJ-7781     TCGA-EJ-7782     TCGA-EJ-7783 
"SPOP WILD-TYPE" "SPOP WILD-TYPE"   "SPOP MUTATED" "SPOP WILD-TYPE" 
    TCGA-EJ-7784     TCGA-EJ-7785     TCGA-EJ-7786     TCGA-EJ-7788 
"SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" 
    TCGA-EJ-7789     TCGA-EJ-7791     TCGA-EJ-7792     TCGA-EJ-7793 
"SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" 
    TCGA-EJ-7794     TCGA-EJ-7797     TCGA-EJ-8468     TCGA-EJ-8469 
"SPOP WILD-TYPE" "SPOP WILD-TYPE"   "SPOP MUTATED" "SPOP WILD-TYPE" 
    TCGA-EJ-8470     TCGA-EJ-8472     TCGA-EJ-8474     TCGA-EJ-A46B 
"SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" 
    TCGA-EJ-A46D     TCGA-EJ-A46E     TCGA-EJ-A46F     TCGA-EJ-A46G 
"SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" 
    TCGA-EJ-A46H     TCGA-EJ-A46I     TCGA-FC-7708     TCGA-FC-7961 
"SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE"   "SPOP MUTATED" 
    TCGA-FC-A4JI     TCGA-FC-A5OB     TCGA-FC-A66V     TCGA-FC-A6HD 
"SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" 
    TCGA-G9-6329     TCGA-G9-6332     TCGA-G9-6333     TCGA-G9-6336 
"SPOP WILD-TYPE" "SPOP WILD-TYPE"   "SPOP MUTATED" "SPOP WILD-TYPE" 
    TCGA-G9-6338     TCGA-G9-6339     TCGA-G9-6342     TCGA-G9-6343 
  "SPOP MUTATED" "SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" 
    TCGA-G9-6347     TCGA-G9-6348     TCGA-G9-6351     TCGA-G9-6353 
"SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" 
    TCGA-G9-6354     TCGA-G9-6356     TCGA-G9-6361     TCGA-G9-6362 
"SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" 
    TCGA-G9-6363     TCGA-G9-6364     TCGA-G9-6365     TCGA-G9-6366 
"SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" 
    TCGA-G9-6367     TCGA-G9-6369     TCGA-G9-6370     TCGA-G9-6371 
"SPOP WILD-TYPE"   "SPOP MUTATED" "SPOP WILD-TYPE" "SPOP WILD-TYPE" 
    TCGA-G9-6373     TCGA-G9-6377     TCGA-G9-6378     TCGA-G9-6379 
"SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" 
    TCGA-G9-6384     TCGA-G9-6385     TCGA-G9-6494     TCGA-G9-6496 
"SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" 
    TCGA-G9-6498     TCGA-G9-6499     TCGA-G9-7510     TCGA-G9-7519 
"SPOP WILD-TYPE" "SPOP WILD-TYPE"   "SPOP MUTATED" "SPOP WILD-TYPE" 
    TCGA-G9-7521     TCGA-G9-7522     TCGA-G9-7523     TCGA-G9-7525 
"SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" 
    TCGA-H9-7775     TCGA-H9-A6BX     TCGA-H9-A6BY     TCGA-HC-7075 
"SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" 
    TCGA-HC-7077     TCGA-HC-7078     TCGA-HC-7079     TCGA-HC-7080 
"SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE"   "SPOP MUTATED" 
    TCGA-HC-7209     TCGA-HC-7211     TCGA-HC-7212     TCGA-HC-7213 
"SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" 
    TCGA-HC-7230     TCGA-HC-7231     TCGA-HC-7233     TCGA-HC-7736 
"SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" 
    TCGA-HC-7737     TCGA-HC-7740     TCGA-HC-7742     TCGA-HC-7744 
"SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" 
    TCGA-HC-7747     TCGA-HC-7748     TCGA-HC-7749     TCGA-HC-7750 
"SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" 
    TCGA-HC-7752     TCGA-HC-7817     TCGA-HC-7818     TCGA-HC-7821 
"SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" 
    TCGA-HC-8216     TCGA-HC-8265     TCGA-HC-A48F     TCGA-HC-A4ZV 
"SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" 
    TCGA-HC-A632     TCGA-HC-A6AL     TCGA-HC-A6AO     TCGA-HC-A6AP 
"SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE"   "SPOP MUTATED" 
    TCGA-HC-A6AQ     TCGA-HC-A6AS     TCGA-HC-A6HX     TCGA-HC-A6HY 
"SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" 
    TCGA-HI-7168     TCGA-HI-7169     TCGA-HI-7170     TCGA-HI-7171 
"SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" 
    TCGA-J4-8198     TCGA-J4-8200     TCGA-J4-A67M     TCGA-J4-A67N 
"SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" 
    TCGA-J4-A67O     TCGA-QU-A6IL     TCGA-QU-A6IM     TCGA-QU-A6IP 
"SPOP WILD-TYPE" "SPOP WILD-TYPE"   "SPOP MUTATED" "SPOP WILD-TYPE" 
    TCGA-CH-5737     TCGA-CH-5738     TCGA-CH-5739     TCGA-CH-5740 
"SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" 
    TCGA-CH-5741     TCGA-CH-5743     TCGA-CH-5744     TCGA-CH-5745 
"SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" 
    TCGA-CH-5746     TCGA-CH-5748     TCGA-CH-5750     TCGA-CH-5751 
"SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" 
    TCGA-CH-5752     TCGA-CH-5753     TCGA-CH-5754     TCGA-CH-5761 
"SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" 
    TCGA-CH-5762     TCGA-CH-5763     TCGA-CH-5764     TCGA-CH-5765 
"SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" 
    TCGA-CH-5766     TCGA-CH-5767     TCGA-CH-5768     TCGA-CH-5769 
"SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" 
    TCGA-CH-5771     TCGA-CH-5772     TCGA-CH-5788     TCGA-CH-5789 
"SPOP WILD-TYPE" "SPOP WILD-TYPE"   "SPOP MUTATED" "SPOP WILD-TYPE" 
    TCGA-CH-5790     TCGA-CH-5791     TCGA-CH-5792     TCGA-CH-5794 
"SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" 
    TCGA-EJ-5494     TCGA-EJ-5495     TCGA-EJ-5496     TCGA-EJ-5497 
"SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" 
    TCGA-EJ-5498     TCGA-EJ-5499     TCGA-EJ-5501     TCGA-EJ-5502 
"SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" 
    TCGA-EJ-5503     TCGA-EJ-5504     TCGA-EJ-5505     TCGA-EJ-5506 
"SPOP WILD-TYPE" "SPOP WILD-TYPE"   "SPOP MUTATED" "SPOP WILD-TYPE" 
    TCGA-EJ-5507     TCGA-EJ-5508     TCGA-EJ-5509     TCGA-EJ-5510 
"SPOP WILD-TYPE" "SPOP WILD-TYPE"   "SPOP MUTATED" "SPOP WILD-TYPE" 
    TCGA-EJ-5511     TCGA-EJ-5512     TCGA-EJ-5514     TCGA-EJ-5515 
"SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" 
    TCGA-EJ-5516     TCGA-EJ-5517     TCGA-EJ-5518     TCGA-EJ-5519 
"SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" 
    TCGA-EJ-5521     TCGA-EJ-5522     TCGA-EJ-5524     TCGA-EJ-5525 
"SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" 
    TCGA-EJ-5526     TCGA-EJ-5527     TCGA-EJ-5530     TCGA-EJ-5531 
"SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE"   "SPOP MUTATED" 
    TCGA-EJ-5532     TCGA-EJ-5542     TCGA-EJ-7115     TCGA-EJ-7123 
"SPOP WILD-TYPE" "SPOP WILD-TYPE"   "SPOP MUTATED"   "SPOP MUTATED" 
    TCGA-EJ-7125     TCGA-EJ-7314     TCGA-EJ-7315     TCGA-EJ-7317 
"SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" 
    TCGA-EJ-7321     TCGA-EJ-7327     TCGA-EJ-7328     TCGA-EJ-7330 
"SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE"   "SPOP MUTATED" 
    TCGA-EJ-7331     TCGA-EJ-7781     TCGA-EJ-7782     TCGA-EJ-7783 
"SPOP WILD-TYPE" "SPOP WILD-TYPE"   "SPOP MUTATED" "SPOP WILD-TYPE" 
    TCGA-EJ-7784     TCGA-EJ-7785     TCGA-EJ-7786     TCGA-EJ-7788 
"SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" 
    TCGA-EJ-7789     TCGA-EJ-7791     TCGA-EJ-7792     TCGA-EJ-7793 
"SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" 
    TCGA-EJ-7794     TCGA-EJ-7797     TCGA-EJ-8468     TCGA-EJ-8469 
"SPOP WILD-TYPE" "SPOP WILD-TYPE"   "SPOP MUTATED" "SPOP WILD-TYPE" 
    TCGA-EJ-8470     TCGA-EJ-8472     TCGA-EJ-8474     TCGA-EJ-A46B 
"SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" 
    TCGA-EJ-A46D     TCGA-EJ-A46E     TCGA-EJ-A46F     TCGA-EJ-A46G 
"SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" 
    TCGA-EJ-A46H     TCGA-EJ-A46I     TCGA-FC-7708     TCGA-FC-7961 
"SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE"   "SPOP MUTATED" 
    TCGA-FC-A4JI     TCGA-FC-A5OB     TCGA-FC-A66V     TCGA-FC-A6HD 
"SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" 
    TCGA-G9-6329     TCGA-G9-6332     TCGA-G9-6333     TCGA-G9-6336 
"SPOP WILD-TYPE" "SPOP WILD-TYPE"   "SPOP MUTATED" "SPOP WILD-TYPE" 
    TCGA-G9-6338     TCGA-G9-6339     TCGA-G9-6342     TCGA-G9-6343 
  "SPOP MUTATED" "SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" 
    TCGA-G9-6347     TCGA-G9-6348     TCGA-G9-6351     TCGA-G9-6353 
"SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" 
    TCGA-G9-6354     TCGA-G9-6356     TCGA-G9-6361     TCGA-G9-6362 
"SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" 
    TCGA-G9-6363     TCGA-G9-6364     TCGA-G9-6365     TCGA-G9-6366 
"SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" 
    TCGA-G9-6367     TCGA-G9-6369     TCGA-G9-6370     TCGA-G9-6371 
"SPOP WILD-TYPE"   "SPOP MUTATED" "SPOP WILD-TYPE" "SPOP WILD-TYPE" 
    TCGA-G9-6373     TCGA-G9-6377     TCGA-G9-6378     TCGA-G9-6379 
"SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" 
    TCGA-G9-6384     TCGA-G9-6385     TCGA-G9-6494     TCGA-G9-6496 
"SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" 
    TCGA-G9-6498     TCGA-G9-6499     TCGA-G9-7510     TCGA-G9-7519 
"SPOP WILD-TYPE" "SPOP WILD-TYPE"   "SPOP MUTATED" "SPOP WILD-TYPE" 
    TCGA-G9-7521     TCGA-G9-7522     TCGA-G9-7523     TCGA-G9-7525 
"SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" 
    TCGA-H9-7775     TCGA-H9-A6BX     TCGA-H9-A6BY     TCGA-HC-7075 
"SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" 
    TCGA-HC-7077     TCGA-HC-7078     TCGA-HC-7079     TCGA-HC-7080 
"SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE"   "SPOP MUTATED" 
    TCGA-HC-7209     TCGA-HC-7211     TCGA-HC-7212     TCGA-HC-7213 
"SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" 
    TCGA-HC-7230     TCGA-HC-7231     TCGA-HC-7233     TCGA-HC-7736 
"SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" 
    TCGA-HC-7737     TCGA-HC-7740     TCGA-HC-7742     TCGA-HC-7744 
"SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" 
    TCGA-HC-7747     TCGA-HC-7748     TCGA-HC-7749     TCGA-HC-7750 
"SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" 
    TCGA-HC-7752     TCGA-HC-7817     TCGA-HC-7818     TCGA-HC-7821 
"SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" 
    TCGA-HC-8216     TCGA-HC-8265     TCGA-HC-A48F     TCGA-HC-A4ZV 
"SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" 
    TCGA-HC-A632     TCGA-HC-A6AL     TCGA-HC-A6AO     TCGA-HC-A6AP 
"SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE"   "SPOP MUTATED" 
    TCGA-HC-A6AQ     TCGA-HC-A6AS     TCGA-HC-A6HX     TCGA-HC-A6HY 
"SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" 
    TCGA-HI-7168     TCGA-HI-7169     TCGA-HI-7170     TCGA-HI-7171 
"SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" 
    TCGA-J4-8198     TCGA-J4-8200     TCGA-J4-A67M     TCGA-J4-A67N 
"SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" 
    TCGA-J4-A67O     TCGA-QU-A6IL     TCGA-QU-A6IM     TCGA-QU-A6IP 
"SPOP WILD-TYPE" "SPOP WILD-TYPE"   "SPOP MUTATED" "SPOP WILD-TYPE" 
    TCGA-CH-5737     TCGA-CH-5738     TCGA-CH-5739     TCGA-CH-5740 
"SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" 
    TCGA-CH-5741     TCGA-CH-5743     TCGA-CH-5744     TCGA-CH-5745 
"SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" 
    TCGA-CH-5746     TCGA-CH-5748     TCGA-CH-5750     TCGA-CH-5751 
"SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" 
    TCGA-CH-5752     TCGA-CH-5753     TCGA-CH-5754     TCGA-CH-5761 
"SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" 
    TCGA-CH-5762     TCGA-CH-5763     TCGA-CH-5764     TCGA-CH-5765 
"SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" 
    TCGA-CH-5766     TCGA-CH-5767     TCGA-CH-5768     TCGA-CH-5769 
"SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" 
    TCGA-CH-5771     TCGA-CH-5772     TCGA-CH-5788     TCGA-CH-5789 
"SPOP WILD-TYPE" "SPOP WILD-TYPE"   "SPOP MUTATED" "SPOP WILD-TYPE" 
    TCGA-CH-5790     TCGA-CH-5791     TCGA-CH-5792     TCGA-CH-5794 
"SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" 
    TCGA-EJ-5494     TCGA-EJ-5495     TCGA-EJ-5496     TCGA-EJ-5497 
"SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" 
    TCGA-EJ-5498     TCGA-EJ-5499     TCGA-EJ-5501     TCGA-EJ-5502 
"SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" 
    TCGA-EJ-5503     TCGA-EJ-5504     TCGA-EJ-5505     TCGA-EJ-5506 
"SPOP WILD-TYPE" "SPOP WILD-TYPE"   "SPOP MUTATED" "SPOP WILD-TYPE" 
    TCGA-EJ-5507     TCGA-EJ-5508     TCGA-EJ-5509     TCGA-EJ-5510 
"SPOP WILD-TYPE" "SPOP WILD-TYPE"   "SPOP MUTATED" "SPOP WILD-TYPE" 
    TCGA-EJ-5511     TCGA-EJ-5512     TCGA-EJ-5514     TCGA-EJ-5515 
"SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" 
    TCGA-EJ-5516     TCGA-EJ-5517     TCGA-EJ-5518     TCGA-EJ-5519 
"SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" 
    TCGA-EJ-5521     TCGA-EJ-5522     TCGA-EJ-5524     TCGA-EJ-5525 
"SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" 
    TCGA-EJ-5526     TCGA-EJ-5527     TCGA-EJ-5530     TCGA-EJ-5531 
"SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE"   "SPOP MUTATED" 
    TCGA-EJ-5532     TCGA-EJ-5542     TCGA-EJ-7115     TCGA-EJ-7123 
"SPOP WILD-TYPE" "SPOP WILD-TYPE"   "SPOP MUTATED"   "SPOP MUTATED" 
    TCGA-EJ-7125     TCGA-EJ-7314     TCGA-EJ-7315     TCGA-EJ-7317 
"SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" 
    TCGA-EJ-7321     TCGA-EJ-7327     TCGA-EJ-7328     TCGA-EJ-7330 
"SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE"   "SPOP MUTATED" 
    TCGA-EJ-7331     TCGA-EJ-7781     TCGA-EJ-7782     TCGA-EJ-7783 
"SPOP WILD-TYPE" "SPOP WILD-TYPE"   "SPOP MUTATED" "SPOP WILD-TYPE" 
    TCGA-EJ-7784     TCGA-EJ-7785     TCGA-EJ-7786     TCGA-EJ-7788 
"SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" 
    TCGA-EJ-7789     TCGA-EJ-7791     TCGA-EJ-7792     TCGA-EJ-7793 
"SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" 
    TCGA-EJ-7794     TCGA-EJ-7797     TCGA-EJ-8468     TCGA-EJ-8469 
"SPOP WILD-TYPE" "SPOP WILD-TYPE"   "SPOP MUTATED" "SPOP WILD-TYPE" 
    TCGA-EJ-8470     TCGA-EJ-8472     TCGA-EJ-8474     TCGA-EJ-A46B 
"SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" 
    TCGA-EJ-A46D     TCGA-EJ-A46E     TCGA-EJ-A46F     TCGA-EJ-A46G 
"SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" 
    TCGA-EJ-A46H     TCGA-EJ-A46I     TCGA-FC-7708     TCGA-FC-7961 
"SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE"   "SPOP MUTATED" 
    TCGA-FC-A4JI     TCGA-FC-A5OB     TCGA-FC-A66V     TCGA-FC-A6HD 
"SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" 
    TCGA-G9-6329     TCGA-G9-6332     TCGA-G9-6333     TCGA-G9-6336 
"SPOP WILD-TYPE" "SPOP WILD-TYPE"   "SPOP MUTATED" "SPOP WILD-TYPE" 
    TCGA-G9-6338     TCGA-G9-6339     TCGA-G9-6342     TCGA-G9-6343 
  "SPOP MUTATED" "SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" 
    TCGA-G9-6347     TCGA-G9-6348     TCGA-G9-6351     TCGA-G9-6353 
"SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" 
    TCGA-G9-6354     TCGA-G9-6356     TCGA-G9-6361     TCGA-G9-6362 
"SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" 
    TCGA-G9-6363     TCGA-G9-6364     TCGA-G9-6365     TCGA-G9-6366 
"SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" 
    TCGA-G9-6367     TCGA-G9-6369     TCGA-G9-6370     TCGA-G9-6371 
"SPOP WILD-TYPE"   "SPOP MUTATED" "SPOP WILD-TYPE" "SPOP WILD-TYPE" 
    TCGA-G9-6373     TCGA-G9-6377     TCGA-G9-6378     TCGA-G9-6379 
"SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" 
    TCGA-G9-6384     TCGA-G9-6385     TCGA-G9-6494     TCGA-G9-6496 
"SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" 
    TCGA-G9-6498     TCGA-G9-6499     TCGA-G9-7510     TCGA-G9-7519 
"SPOP WILD-TYPE" "SPOP WILD-TYPE"   "SPOP MUTATED" "SPOP WILD-TYPE" 
    TCGA-G9-7521     TCGA-G9-7522     TCGA-G9-7523     TCGA-G9-7525 
"SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" 
    TCGA-H9-7775     TCGA-H9-A6BX     TCGA-H9-A6BY     TCGA-HC-7075 
"SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" 
    TCGA-HC-7077     TCGA-HC-7078     TCGA-HC-7079     TCGA-HC-7080 
"SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE"   "SPOP MUTATED" 
    TCGA-HC-7209     TCGA-HC-7211     TCGA-HC-7212     TCGA-HC-7213 
"SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" 
    TCGA-HC-7230     TCGA-HC-7231     TCGA-HC-7233     TCGA-HC-7736 
"SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" 
    TCGA-HC-7737     TCGA-HC-7740     TCGA-HC-7742     TCGA-HC-7744 
"SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" 
    TCGA-HC-7747     TCGA-HC-7748     TCGA-HC-7749     TCGA-HC-7750 
"SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" 
    TCGA-HC-7752     TCGA-HC-7817     TCGA-HC-7818     TCGA-HC-7821 
"SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" 
    TCGA-HC-8216     TCGA-HC-8265     TCGA-HC-A48F     TCGA-HC-A4ZV 
"SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" 
    TCGA-HC-A632     TCGA-HC-A6AL     TCGA-HC-A6AO     TCGA-HC-A6AP 
"SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE"   "SPOP MUTATED" 
    TCGA-HC-A6AQ     TCGA-HC-A6AS     TCGA-HC-A6HX     TCGA-HC-A6HY 
"SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" 
    TCGA-HI-7168     TCGA-HI-7169     TCGA-HI-7170     TCGA-HI-7171 
"SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" 
    TCGA-J4-8198     TCGA-J4-8200     TCGA-J4-A67M     TCGA-J4-A67N 
"SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" 
    TCGA-J4-A67O     TCGA-QU-A6IL     TCGA-QU-A6IM     TCGA-QU-A6IP 
"SPOP WILD-TYPE" "SPOP WILD-TYPE"   "SPOP MUTATED" "SPOP WILD-TYPE" 
[1] "hr=" "1"  
D3V2, continuous
                vv
clus             T2 T3 T4
  SPOP MUTATED    9  8  0
  SPOP WILD-TYPE 79 97  5
D3V3, multiclass
    clus
vv   SPOP MUTATED SPOP WILD-TYPE
  T2            9             79
  T3            8             97
  T4            0              5
D3V4, binary
                cls
clus               0   1
  SPOP MUTATED    15   1
  SPOP WILD-TYPE 139  16
[1] "tbl2"
                cls
clus             [,1] [,2]
  SPOP MUTATED     15    1
  SPOP WILD-TYPE  139   16
   clus
vv  SPOP MUTATED SPOP WILD-TYPE
  0           15            139
  1            1             16
                vv
clus              R0  R1  RX
  SPOP MUTATED    13   2   1
  SPOP WILD-TYPE 136  34   4
D3V5, multiclass
    clus
vv   SPOP MUTATED SPOP WILD-TYPE
  R0           13            136
  R1            2             34
  RX            1              4
D3V6, continuous
D3V7, continuous
D3V8, continuous
D3V9, continuous
D3V10, continuous
D3V11, continuous
D3V12, continuous
D3V13, continuous
D3V14, continuous

Clustering(4) Variable = TP53 MUTATION ANALYSIS
D4V1, survival
                sevent
clus2              0   1
  TP53 MUTATED    17   1
  TP53 WILD-TYPE 182   0
  TP53 MUTATED TP53 WILD-TYPE 
            18            182 
  TP53 MUTATED TP53 WILD-TYPE 
             1              0 
$`TP53 MUTATED`
TCGA-CH-5761 TCGA-EJ-5507 TCGA-EJ-5514 TCGA-EJ-5521 TCGA-EJ-5525 TCGA-EJ-7315 
        0.92        23.90        36.23        51.88        36.66         9.50 
TCGA-EJ-7781 TCGA-EJ-8472 TCGA-G9-6499 TCGA-G9-7510 TCGA-G9-7521 TCGA-HC-7213 
        5.56        66.12        50.73        38.96        30.97         1.97 
TCGA-HC-7230 TCGA-HC-7742 TCGA-HC-8216 TCGA-HC-A48F TCGA-HC-A632 TCGA-HI-7171 
        1.68         1.48        22.42         1.51         2.01        66.02 

$`TP53 WILD-TYPE`
TCGA-CH-5737 TCGA-CH-5738 TCGA-CH-5739 TCGA-CH-5740 TCGA-CH-5741 TCGA-CH-5743 
        2.99         6.97        22.06         1.02        12.99        13.97 
TCGA-CH-5744 TCGA-CH-5745 TCGA-CH-5746 TCGA-CH-5748 TCGA-CH-5750 TCGA-CH-5751 
        1.97         2.99        24.03         1.02        13.02        35.01 
TCGA-CH-5752 TCGA-CH-5753 TCGA-CH-5754 TCGA-CH-5762 TCGA-CH-5763 TCGA-CH-5764 
       31.00         1.02         2.04        44.02        12.00         1.02 
TCGA-CH-5765 TCGA-CH-5766 TCGA-CH-5767 TCGA-CH-5768 TCGA-CH-5769 TCGA-CH-5771 
       23.01         1.02        15.06        24.03         2.04        13.02 
TCGA-CH-5772 TCGA-CH-5788 TCGA-CH-5789 TCGA-CH-5790 TCGA-CH-5791 TCGA-CH-5792 
       15.98        26.99         9.99        32.02        33.01         2.99 
TCGA-CH-5794 TCGA-EJ-5494 TCGA-EJ-5495 TCGA-EJ-5496 TCGA-EJ-5497 TCGA-EJ-5498 
       29.00        27.16        33.11        19.56        13.32        29.79 
TCGA-EJ-5499 TCGA-EJ-5501 TCGA-EJ-5502 TCGA-EJ-5503 TCGA-EJ-5504 TCGA-EJ-5505 
       17.52        30.81         8.05        23.54        28.93        30.31 
TCGA-EJ-5506 TCGA-EJ-5508 TCGA-EJ-5509 TCGA-EJ-5510 TCGA-EJ-5511 TCGA-EJ-5512 
       27.19        38.93        36.23        36.69        32.02        38.53 
TCGA-EJ-5515 TCGA-EJ-5516 TCGA-EJ-5517 TCGA-EJ-5518 TCGA-EJ-5519 TCGA-EJ-5522 
       40.77        46.55        47.80        52.27        43.92        48.07 
TCGA-EJ-5524 TCGA-EJ-5526 TCGA-EJ-5527 TCGA-EJ-5530 TCGA-EJ-5531 TCGA-EJ-5532 
       43.07        38.76        39.75        41.82        30.28        47.87 
TCGA-EJ-5542 TCGA-EJ-7115 TCGA-EJ-7123 TCGA-EJ-7125 TCGA-EJ-7314 TCGA-EJ-7317 
       29.06        27.02        49.02        61.15         9.70         9.37 
TCGA-EJ-7321 TCGA-EJ-7327 TCGA-EJ-7328 TCGA-EJ-7330 TCGA-EJ-7331 TCGA-EJ-7782 
        7.66         5.75         5.59         6.28         0.30         2.10 
TCGA-EJ-7783 TCGA-EJ-7784 TCGA-EJ-7785 TCGA-EJ-7786 TCGA-EJ-7788 TCGA-EJ-7789 
        4.31         5.49        20.55        14.53         1.71        18.15 
TCGA-EJ-7791 TCGA-EJ-7792 TCGA-EJ-7793 TCGA-EJ-7794 TCGA-EJ-7797 TCGA-EJ-8468 
       19.59        17.29         1.41        23.05        12.13        64.47 
TCGA-EJ-8469 TCGA-EJ-8470 TCGA-EJ-8474 TCGA-EJ-A46B TCGA-EJ-A46D TCGA-EJ-A46E 
       63.98        26.99        10.32         5.33         4.24        17.49 
TCGA-EJ-A46F TCGA-EJ-A46G TCGA-EJ-A46H TCGA-EJ-A46I TCGA-FC-7708 TCGA-FC-7961 
        9.83         3.06         7.53        21.96        28.41        15.42 
TCGA-FC-A4JI TCGA-FC-A5OB TCGA-FC-A66V TCGA-FC-A6HD TCGA-G9-6329 TCGA-G9-6332 
       13.45         8.98        17.23         1.78        41.62        65.92 
TCGA-G9-6333 TCGA-G9-6336 TCGA-G9-6338 TCGA-G9-6339 TCGA-G9-6342 TCGA-G9-6343 
       65.95        65.98        65.98        65.98        55.76        18.21 
TCGA-G9-6347 TCGA-G9-6348 TCGA-G9-6351 TCGA-G9-6353 TCGA-G9-6354 TCGA-G9-6356 
       56.48        49.81        46.16        50.70        49.35        47.15 
TCGA-G9-6361 TCGA-G9-6362 TCGA-G9-6363 TCGA-G9-6364 TCGA-G9-6365 TCGA-G9-6366 
       46.52        47.44        45.30        39.39        44.81         3.32 
TCGA-G9-6367 TCGA-G9-6369 TCGA-G9-6370 TCGA-G9-6371 TCGA-G9-6373 TCGA-G9-6377 
       40.18        39.95        38.01        40.31        26.66        31.50 
TCGA-G9-6378 TCGA-G9-6379 TCGA-G9-6384 TCGA-G9-6385 TCGA-G9-6494 TCGA-G9-6496 
       37.97        45.80        25.15        27.29        58.22        56.75 
TCGA-G9-6498 TCGA-G9-7519 TCGA-G9-7522 TCGA-G9-7523 TCGA-G9-7525 TCGA-H9-7775 
       52.87        27.91        21.30        28.18        32.68         6.08 
TCGA-H9-A6BX TCGA-H9-A6BY TCGA-HC-7075 TCGA-HC-7077 TCGA-HC-7078 TCGA-HC-7079 
       18.74         3.68        19.76        65.98         5.33         2.93 
TCGA-HC-7080 TCGA-HC-7209 TCGA-HC-7211 TCGA-HC-7212 TCGA-HC-7231 TCGA-HC-7233 
        2.01         1.35         0.79        28.60         2.37         1.71 
TCGA-HC-7736 TCGA-HC-7737 TCGA-HC-7740 TCGA-HC-7744 TCGA-HC-7747 TCGA-HC-7748 
        0.72         2.10         1.74         1.68         1.87        26.04 
TCGA-HC-7749 TCGA-HC-7750 TCGA-HC-7752 TCGA-HC-7817 TCGA-HC-7818 TCGA-HC-7821 
        1.97         1.12         3.22         1.05         1.48         1.84 
TCGA-HC-8265 TCGA-HC-A4ZV TCGA-HC-A6AL TCGA-HC-A6AO TCGA-HC-A6AP TCGA-HC-A6AQ 
       15.88         0.76         2.20         5.49         2.33         3.48 
TCGA-HC-A6AS TCGA-HC-A6HX TCGA-HC-A6HY TCGA-HI-7168 TCGA-HI-7169 TCGA-HI-7170 
        1.45         1.25         4.41        65.92        64.08        62.43 
TCGA-J4-8198 TCGA-J4-8200 TCGA-J4-A67M TCGA-J4-A67N TCGA-J4-A67O TCGA-QU-A6IL 
       20.19        12.30        16.04        16.54        16.14         3.19 
TCGA-QU-A6IM TCGA-QU-A6IP 
       41.00        65.88 

  TP53 MUTATED TP53 WILD-TYPE 
          0.92           0.30 
  TP53 MUTATED TP53 WILD-TYPE 
         66.12          65.98 
  TP53 MUTATED TP53 WILD-TYPE 
        23.160         19.975 
[1] "0.9 - 66.1 (23.2)" "0.3 - 66.0 (20.0)"
    TCGA-CH-5737     TCGA-CH-5738     TCGA-CH-5739     TCGA-CH-5740 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-CH-5741     TCGA-CH-5743     TCGA-CH-5744     TCGA-CH-5745 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-CH-5746     TCGA-CH-5748     TCGA-CH-5750     TCGA-CH-5751 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-CH-5752     TCGA-CH-5753     TCGA-CH-5754     TCGA-CH-5761 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-CH-5762     TCGA-CH-5763     TCGA-CH-5764     TCGA-CH-5765 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-CH-5766     TCGA-CH-5767     TCGA-CH-5768     TCGA-CH-5769 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-CH-5771     TCGA-CH-5772     TCGA-CH-5788     TCGA-CH-5789 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-CH-5790     TCGA-CH-5791     TCGA-CH-5792     TCGA-CH-5794 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-EJ-5494     TCGA-EJ-5495     TCGA-EJ-5496     TCGA-EJ-5497 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-EJ-5498     TCGA-EJ-5499     TCGA-EJ-5501     TCGA-EJ-5502 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-EJ-5503     TCGA-EJ-5504     TCGA-EJ-5505     TCGA-EJ-5506 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-EJ-5507     TCGA-EJ-5508     TCGA-EJ-5509     TCGA-EJ-5510 
  "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-EJ-5511     TCGA-EJ-5512     TCGA-EJ-5514     TCGA-EJ-5515 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-EJ-5516     TCGA-EJ-5517     TCGA-EJ-5518     TCGA-EJ-5519 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-EJ-5521     TCGA-EJ-5522     TCGA-EJ-5524     TCGA-EJ-5525 
  "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-EJ-5526     TCGA-EJ-5527     TCGA-EJ-5530     TCGA-EJ-5531 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-EJ-5532     TCGA-EJ-5542     TCGA-EJ-7115     TCGA-EJ-7123 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-EJ-7125     TCGA-EJ-7314     TCGA-EJ-7315     TCGA-EJ-7317 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-EJ-7321     TCGA-EJ-7327     TCGA-EJ-7328     TCGA-EJ-7330 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-EJ-7331     TCGA-EJ-7781     TCGA-EJ-7782     TCGA-EJ-7783 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-EJ-7784     TCGA-EJ-7785     TCGA-EJ-7786     TCGA-EJ-7788 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-EJ-7789     TCGA-EJ-7791     TCGA-EJ-7792     TCGA-EJ-7793 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-EJ-7794     TCGA-EJ-7797     TCGA-EJ-8468     TCGA-EJ-8469 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-EJ-8470     TCGA-EJ-8472     TCGA-EJ-8474     TCGA-EJ-A46B 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-EJ-A46D     TCGA-EJ-A46E     TCGA-EJ-A46F     TCGA-EJ-A46G 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-EJ-A46H     TCGA-EJ-A46I     TCGA-FC-7708     TCGA-FC-7961 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-FC-A4JI     TCGA-FC-A5OB     TCGA-FC-A66V     TCGA-FC-A6HD 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-G9-6329     TCGA-G9-6332     TCGA-G9-6333     TCGA-G9-6336 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-G9-6338     TCGA-G9-6339     TCGA-G9-6342     TCGA-G9-6343 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-G9-6347     TCGA-G9-6348     TCGA-G9-6351     TCGA-G9-6353 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-G9-6354     TCGA-G9-6356     TCGA-G9-6361     TCGA-G9-6362 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-G9-6363     TCGA-G9-6364     TCGA-G9-6365     TCGA-G9-6366 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-G9-6367     TCGA-G9-6369     TCGA-G9-6370     TCGA-G9-6371 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-G9-6373     TCGA-G9-6377     TCGA-G9-6378     TCGA-G9-6379 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-G9-6384     TCGA-G9-6385     TCGA-G9-6494     TCGA-G9-6496 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-G9-6498     TCGA-G9-6499     TCGA-G9-7510     TCGA-G9-7519 
"TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-G9-7521     TCGA-G9-7522     TCGA-G9-7523     TCGA-G9-7525 
  "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-H9-7775     TCGA-H9-A6BX     TCGA-H9-A6BY     TCGA-HC-7075 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-HC-7077     TCGA-HC-7078     TCGA-HC-7079     TCGA-HC-7080 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-HC-7209     TCGA-HC-7211     TCGA-HC-7212     TCGA-HC-7213 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-HC-7230     TCGA-HC-7231     TCGA-HC-7233     TCGA-HC-7736 
  "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-HC-7737     TCGA-HC-7740     TCGA-HC-7742     TCGA-HC-7744 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-HC-7747     TCGA-HC-7748     TCGA-HC-7749     TCGA-HC-7750 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-HC-7752     TCGA-HC-7817     TCGA-HC-7818     TCGA-HC-7821 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-HC-8216     TCGA-HC-8265     TCGA-HC-A48F     TCGA-HC-A4ZV 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-HC-A632     TCGA-HC-A6AL     TCGA-HC-A6AO     TCGA-HC-A6AP 
  "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-HC-A6AQ     TCGA-HC-A6AS     TCGA-HC-A6HX     TCGA-HC-A6HY 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-HI-7168     TCGA-HI-7169     TCGA-HI-7170     TCGA-HI-7171 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-J4-8198     TCGA-J4-8200     TCGA-J4-A67M     TCGA-J4-A67N 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-J4-A67O     TCGA-QU-A6IL     TCGA-QU-A6IM     TCGA-QU-A6IP 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-CH-5737     TCGA-CH-5738     TCGA-CH-5739     TCGA-CH-5740 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-CH-5741     TCGA-CH-5743     TCGA-CH-5744     TCGA-CH-5745 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-CH-5746     TCGA-CH-5748     TCGA-CH-5750     TCGA-CH-5751 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-CH-5752     TCGA-CH-5753     TCGA-CH-5754     TCGA-CH-5761 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-CH-5762     TCGA-CH-5763     TCGA-CH-5764     TCGA-CH-5765 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-CH-5766     TCGA-CH-5767     TCGA-CH-5768     TCGA-CH-5769 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-CH-5771     TCGA-CH-5772     TCGA-CH-5788     TCGA-CH-5789 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-CH-5790     TCGA-CH-5791     TCGA-CH-5792     TCGA-CH-5794 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-EJ-5494     TCGA-EJ-5495     TCGA-EJ-5496     TCGA-EJ-5497 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-EJ-5498     TCGA-EJ-5499     TCGA-EJ-5501     TCGA-EJ-5502 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-EJ-5503     TCGA-EJ-5504     TCGA-EJ-5505     TCGA-EJ-5506 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-EJ-5507     TCGA-EJ-5508     TCGA-EJ-5509     TCGA-EJ-5510 
  "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-EJ-5511     TCGA-EJ-5512     TCGA-EJ-5514     TCGA-EJ-5515 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-EJ-5516     TCGA-EJ-5517     TCGA-EJ-5518     TCGA-EJ-5519 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-EJ-5521     TCGA-EJ-5522     TCGA-EJ-5524     TCGA-EJ-5525 
  "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-EJ-5526     TCGA-EJ-5527     TCGA-EJ-5530     TCGA-EJ-5531 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-EJ-5532     TCGA-EJ-5542     TCGA-EJ-7115     TCGA-EJ-7123 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-EJ-7125     TCGA-EJ-7314     TCGA-EJ-7315     TCGA-EJ-7317 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-EJ-7321     TCGA-EJ-7327     TCGA-EJ-7328     TCGA-EJ-7330 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-EJ-7331     TCGA-EJ-7781     TCGA-EJ-7782     TCGA-EJ-7783 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-EJ-7784     TCGA-EJ-7785     TCGA-EJ-7786     TCGA-EJ-7788 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-EJ-7789     TCGA-EJ-7791     TCGA-EJ-7792     TCGA-EJ-7793 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-EJ-7794     TCGA-EJ-7797     TCGA-EJ-8468     TCGA-EJ-8469 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-EJ-8470     TCGA-EJ-8472     TCGA-EJ-8474     TCGA-EJ-A46B 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-EJ-A46D     TCGA-EJ-A46E     TCGA-EJ-A46F     TCGA-EJ-A46G 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-EJ-A46H     TCGA-EJ-A46I     TCGA-FC-7708     TCGA-FC-7961 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-FC-A4JI     TCGA-FC-A5OB     TCGA-FC-A66V     TCGA-FC-A6HD 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-G9-6329     TCGA-G9-6332     TCGA-G9-6333     TCGA-G9-6336 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-G9-6338     TCGA-G9-6339     TCGA-G9-6342     TCGA-G9-6343 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-G9-6347     TCGA-G9-6348     TCGA-G9-6351     TCGA-G9-6353 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-G9-6354     TCGA-G9-6356     TCGA-G9-6361     TCGA-G9-6362 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-G9-6363     TCGA-G9-6364     TCGA-G9-6365     TCGA-G9-6366 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-G9-6367     TCGA-G9-6369     TCGA-G9-6370     TCGA-G9-6371 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-G9-6373     TCGA-G9-6377     TCGA-G9-6378     TCGA-G9-6379 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-G9-6384     TCGA-G9-6385     TCGA-G9-6494     TCGA-G9-6496 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-G9-6498     TCGA-G9-6499     TCGA-G9-7510     TCGA-G9-7519 
"TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-G9-7521     TCGA-G9-7522     TCGA-G9-7523     TCGA-G9-7525 
  "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-H9-7775     TCGA-H9-A6BX     TCGA-H9-A6BY     TCGA-HC-7075 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-HC-7077     TCGA-HC-7078     TCGA-HC-7079     TCGA-HC-7080 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-HC-7209     TCGA-HC-7211     TCGA-HC-7212     TCGA-HC-7213 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-HC-7230     TCGA-HC-7231     TCGA-HC-7233     TCGA-HC-7736 
  "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-HC-7737     TCGA-HC-7740     TCGA-HC-7742     TCGA-HC-7744 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-HC-7747     TCGA-HC-7748     TCGA-HC-7749     TCGA-HC-7750 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-HC-7752     TCGA-HC-7817     TCGA-HC-7818     TCGA-HC-7821 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-HC-8216     TCGA-HC-8265     TCGA-HC-A48F     TCGA-HC-A4ZV 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-HC-A632     TCGA-HC-A6AL     TCGA-HC-A6AO     TCGA-HC-A6AP 
  "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-HC-A6AQ     TCGA-HC-A6AS     TCGA-HC-A6HX     TCGA-HC-A6HY 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-HI-7168     TCGA-HI-7169     TCGA-HI-7170     TCGA-HI-7171 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-J4-8198     TCGA-J4-8200     TCGA-J4-A67M     TCGA-J4-A67N 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-J4-A67O     TCGA-QU-A6IL     TCGA-QU-A6IM     TCGA-QU-A6IP 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-CH-5737     TCGA-CH-5738     TCGA-CH-5739     TCGA-CH-5740 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-CH-5741     TCGA-CH-5743     TCGA-CH-5744     TCGA-CH-5745 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-CH-5746     TCGA-CH-5748     TCGA-CH-5750     TCGA-CH-5751 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-CH-5752     TCGA-CH-5753     TCGA-CH-5754     TCGA-CH-5761 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-CH-5762     TCGA-CH-5763     TCGA-CH-5764     TCGA-CH-5765 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-CH-5766     TCGA-CH-5767     TCGA-CH-5768     TCGA-CH-5769 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-CH-5771     TCGA-CH-5772     TCGA-CH-5788     TCGA-CH-5789 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-CH-5790     TCGA-CH-5791     TCGA-CH-5792     TCGA-CH-5794 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-EJ-5494     TCGA-EJ-5495     TCGA-EJ-5496     TCGA-EJ-5497 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-EJ-5498     TCGA-EJ-5499     TCGA-EJ-5501     TCGA-EJ-5502 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-EJ-5503     TCGA-EJ-5504     TCGA-EJ-5505     TCGA-EJ-5506 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-EJ-5507     TCGA-EJ-5508     TCGA-EJ-5509     TCGA-EJ-5510 
  "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-EJ-5511     TCGA-EJ-5512     TCGA-EJ-5514     TCGA-EJ-5515 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-EJ-5516     TCGA-EJ-5517     TCGA-EJ-5518     TCGA-EJ-5519 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-EJ-5521     TCGA-EJ-5522     TCGA-EJ-5524     TCGA-EJ-5525 
  "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-EJ-5526     TCGA-EJ-5527     TCGA-EJ-5530     TCGA-EJ-5531 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-EJ-5532     TCGA-EJ-5542     TCGA-EJ-7115     TCGA-EJ-7123 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-EJ-7125     TCGA-EJ-7314     TCGA-EJ-7315     TCGA-EJ-7317 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-EJ-7321     TCGA-EJ-7327     TCGA-EJ-7328     TCGA-EJ-7330 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-EJ-7331     TCGA-EJ-7781     TCGA-EJ-7782     TCGA-EJ-7783 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-EJ-7784     TCGA-EJ-7785     TCGA-EJ-7786     TCGA-EJ-7788 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-EJ-7789     TCGA-EJ-7791     TCGA-EJ-7792     TCGA-EJ-7793 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-EJ-7794     TCGA-EJ-7797     TCGA-EJ-8468     TCGA-EJ-8469 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-EJ-8470     TCGA-EJ-8472     TCGA-EJ-8474     TCGA-EJ-A46B 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-EJ-A46D     TCGA-EJ-A46E     TCGA-EJ-A46F     TCGA-EJ-A46G 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-EJ-A46H     TCGA-EJ-A46I     TCGA-FC-7708     TCGA-FC-7961 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-FC-A4JI     TCGA-FC-A5OB     TCGA-FC-A66V     TCGA-FC-A6HD 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-G9-6329     TCGA-G9-6332     TCGA-G9-6333     TCGA-G9-6336 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-G9-6338     TCGA-G9-6339     TCGA-G9-6342     TCGA-G9-6343 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-G9-6347     TCGA-G9-6348     TCGA-G9-6351     TCGA-G9-6353 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-G9-6354     TCGA-G9-6356     TCGA-G9-6361     TCGA-G9-6362 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-G9-6363     TCGA-G9-6364     TCGA-G9-6365     TCGA-G9-6366 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-G9-6367     TCGA-G9-6369     TCGA-G9-6370     TCGA-G9-6371 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-G9-6373     TCGA-G9-6377     TCGA-G9-6378     TCGA-G9-6379 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-G9-6384     TCGA-G9-6385     TCGA-G9-6494     TCGA-G9-6496 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-G9-6498     TCGA-G9-6499     TCGA-G9-7510     TCGA-G9-7519 
"TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-G9-7521     TCGA-G9-7522     TCGA-G9-7523     TCGA-G9-7525 
  "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-H9-7775     TCGA-H9-A6BX     TCGA-H9-A6BY     TCGA-HC-7075 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-HC-7077     TCGA-HC-7078     TCGA-HC-7079     TCGA-HC-7080 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-HC-7209     TCGA-HC-7211     TCGA-HC-7212     TCGA-HC-7213 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-HC-7230     TCGA-HC-7231     TCGA-HC-7233     TCGA-HC-7736 
  "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-HC-7737     TCGA-HC-7740     TCGA-HC-7742     TCGA-HC-7744 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-HC-7747     TCGA-HC-7748     TCGA-HC-7749     TCGA-HC-7750 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-HC-7752     TCGA-HC-7817     TCGA-HC-7818     TCGA-HC-7821 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-HC-8216     TCGA-HC-8265     TCGA-HC-A48F     TCGA-HC-A4ZV 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-HC-A632     TCGA-HC-A6AL     TCGA-HC-A6AO     TCGA-HC-A6AP 
  "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-HC-A6AQ     TCGA-HC-A6AS     TCGA-HC-A6HX     TCGA-HC-A6HY 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-HI-7168     TCGA-HI-7169     TCGA-HI-7170     TCGA-HI-7171 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-J4-8198     TCGA-J4-8200     TCGA-J4-A67M     TCGA-J4-A67N 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-J4-A67O     TCGA-QU-A6IL     TCGA-QU-A6IM     TCGA-QU-A6IP 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
[1] "hr=" "1"  
D4V2, continuous
                vv
clus             T2 T3 T4
  TP53 MUTATED    5 13  0
  TP53 WILD-TYPE 83 92  5
D4V3, multiclass
    clus
vv   TP53 MUTATED TP53 WILD-TYPE
  T2            5             83
  T3           13             92
  T4            0              5
D4V4, binary
                cls
clus               0   1
  TP53 MUTATED    15   3
  TP53 WILD-TYPE 139  14
[1] "tbl2"
                cls
clus             [,1] [,2]
  TP53 MUTATED     15    3
  TP53 WILD-TYPE  139   14
   clus
vv  TP53 MUTATED TP53 WILD-TYPE
  0           15            139
  1            3             14
                vv
clus              R0  R1  RX
  TP53 MUTATED    15   3   0
  TP53 WILD-TYPE 134  33   5
D4V5, multiclass
    clus
vv   TP53 MUTATED TP53 WILD-TYPE
  R0           15            134
  R1            3             33
  RX            0              5
D4V6, continuous
D4V7, continuous
D4V8, continuous
D4V9, continuous
D4V10, continuous
D4V11, continuous
D4V12, continuous
D4V13, continuous
D4V14, continuous

Clustering(5) Variable = PTEN MUTATION ANALYSIS
D5V1, survival
                sevent
clus2              0   1
  PTEN MUTATED     9   0
  PTEN WILD-TYPE 190   1
  PTEN MUTATED PTEN WILD-TYPE 
             9            191 
  PTEN MUTATED PTEN WILD-TYPE 
             0              1 
$`PTEN MUTATED`
TCGA-CH-5737 TCGA-CH-5740 TCGA-CH-5791 TCGA-EJ-7791 TCGA-FC-7961 TCGA-G9-6366 
        2.99         1.02        33.01        19.59        15.42         3.32 
TCGA-HC-7212 TCGA-HC-7230 TCGA-HC-A6AL 
       28.60         1.68         2.20 

$`PTEN WILD-TYPE`
TCGA-CH-5738 TCGA-CH-5739 TCGA-CH-5741 TCGA-CH-5743 TCGA-CH-5744 TCGA-CH-5745 
        6.97        22.06        12.99        13.97         1.97         2.99 
TCGA-CH-5746 TCGA-CH-5748 TCGA-CH-5750 TCGA-CH-5751 TCGA-CH-5752 TCGA-CH-5753 
       24.03         1.02        13.02        35.01        31.00         1.02 
TCGA-CH-5754 TCGA-CH-5761 TCGA-CH-5762 TCGA-CH-5763 TCGA-CH-5764 TCGA-CH-5765 
        2.04         0.92        44.02        12.00         1.02        23.01 
TCGA-CH-5766 TCGA-CH-5767 TCGA-CH-5768 TCGA-CH-5769 TCGA-CH-5771 TCGA-CH-5772 
        1.02        15.06        24.03         2.04        13.02        15.98 
TCGA-CH-5788 TCGA-CH-5789 TCGA-CH-5790 TCGA-CH-5792 TCGA-CH-5794 TCGA-EJ-5494 
       26.99         9.99        32.02         2.99        29.00        27.16 
TCGA-EJ-5495 TCGA-EJ-5496 TCGA-EJ-5497 TCGA-EJ-5498 TCGA-EJ-5499 TCGA-EJ-5501 
       33.11        19.56        13.32        29.79        17.52        30.81 
TCGA-EJ-5502 TCGA-EJ-5503 TCGA-EJ-5504 TCGA-EJ-5505 TCGA-EJ-5506 TCGA-EJ-5507 
        8.05        23.54        28.93        30.31        27.19        23.90 
TCGA-EJ-5508 TCGA-EJ-5509 TCGA-EJ-5510 TCGA-EJ-5511 TCGA-EJ-5512 TCGA-EJ-5514 
       38.93        36.23        36.69        32.02        38.53        36.23 
TCGA-EJ-5515 TCGA-EJ-5516 TCGA-EJ-5517 TCGA-EJ-5518 TCGA-EJ-5519 TCGA-EJ-5521 
       40.77        46.55        47.80        52.27        43.92        51.88 
TCGA-EJ-5522 TCGA-EJ-5524 TCGA-EJ-5525 TCGA-EJ-5526 TCGA-EJ-5527 TCGA-EJ-5530 
       48.07        43.07        36.66        38.76        39.75        41.82 
TCGA-EJ-5531 TCGA-EJ-5532 TCGA-EJ-5542 TCGA-EJ-7115 TCGA-EJ-7123 TCGA-EJ-7125 
       30.28        47.87        29.06        27.02        49.02        61.15 
TCGA-EJ-7314 TCGA-EJ-7315 TCGA-EJ-7317 TCGA-EJ-7321 TCGA-EJ-7327 TCGA-EJ-7328 
        9.70         9.50         9.37         7.66         5.75         5.59 
TCGA-EJ-7330 TCGA-EJ-7331 TCGA-EJ-7781 TCGA-EJ-7782 TCGA-EJ-7783 TCGA-EJ-7784 
        6.28         0.30         5.56         2.10         4.31         5.49 
TCGA-EJ-7785 TCGA-EJ-7786 TCGA-EJ-7788 TCGA-EJ-7789 TCGA-EJ-7792 TCGA-EJ-7793 
       20.55        14.53         1.71        18.15        17.29         1.41 
TCGA-EJ-7794 TCGA-EJ-7797 TCGA-EJ-8468 TCGA-EJ-8469 TCGA-EJ-8470 TCGA-EJ-8472 
       23.05        12.13        64.47        63.98        26.99        66.12 
TCGA-EJ-8474 TCGA-EJ-A46B TCGA-EJ-A46D TCGA-EJ-A46E TCGA-EJ-A46F TCGA-EJ-A46G 
       10.32         5.33         4.24        17.49         9.83         3.06 
TCGA-EJ-A46H TCGA-EJ-A46I TCGA-FC-7708 TCGA-FC-A4JI TCGA-FC-A5OB TCGA-FC-A66V 
        7.53        21.96        28.41        13.45         8.98        17.23 
TCGA-FC-A6HD TCGA-G9-6329 TCGA-G9-6332 TCGA-G9-6333 TCGA-G9-6336 TCGA-G9-6338 
        1.78        41.62        65.92        65.95        65.98        65.98 
TCGA-G9-6339 TCGA-G9-6342 TCGA-G9-6343 TCGA-G9-6347 TCGA-G9-6348 TCGA-G9-6351 
       65.98        55.76        18.21        56.48        49.81        46.16 
TCGA-G9-6353 TCGA-G9-6354 TCGA-G9-6356 TCGA-G9-6361 TCGA-G9-6362 TCGA-G9-6363 
       50.70        49.35        47.15        46.52        47.44        45.30 
TCGA-G9-6364 TCGA-G9-6365 TCGA-G9-6367 TCGA-G9-6369 TCGA-G9-6370 TCGA-G9-6371 
       39.39        44.81        40.18        39.95        38.01        40.31 
TCGA-G9-6373 TCGA-G9-6377 TCGA-G9-6378 TCGA-G9-6379 TCGA-G9-6384 TCGA-G9-6385 
       26.66        31.50        37.97        45.80        25.15        27.29 
TCGA-G9-6494 TCGA-G9-6496 TCGA-G9-6498 TCGA-G9-6499 TCGA-G9-7510 TCGA-G9-7519 
       58.22        56.75        52.87        50.73        38.96        27.91 
TCGA-G9-7521 TCGA-G9-7522 TCGA-G9-7523 TCGA-G9-7525 TCGA-H9-7775 TCGA-H9-A6BX 
       30.97        21.30        28.18        32.68         6.08        18.74 
TCGA-H9-A6BY TCGA-HC-7075 TCGA-HC-7077 TCGA-HC-7078 TCGA-HC-7079 TCGA-HC-7080 
        3.68        19.76        65.98         5.33         2.93         2.01 
TCGA-HC-7209 TCGA-HC-7211 TCGA-HC-7213 TCGA-HC-7231 TCGA-HC-7233 TCGA-HC-7736 
        1.35         0.79         1.97         2.37         1.71         0.72 
TCGA-HC-7737 TCGA-HC-7740 TCGA-HC-7742 TCGA-HC-7744 TCGA-HC-7747 TCGA-HC-7748 
        2.10         1.74         1.48         1.68         1.87        26.04 
TCGA-HC-7749 TCGA-HC-7750 TCGA-HC-7752 TCGA-HC-7817 TCGA-HC-7818 TCGA-HC-7821 
        1.97         1.12         3.22         1.05         1.48         1.84 
TCGA-HC-8216 TCGA-HC-8265 TCGA-HC-A48F TCGA-HC-A4ZV TCGA-HC-A632 TCGA-HC-A6AO 
       22.42        15.88         1.51         0.76         2.01         5.49 
TCGA-HC-A6AP TCGA-HC-A6AQ TCGA-HC-A6AS TCGA-HC-A6HX TCGA-HC-A6HY TCGA-HI-7168 
        2.33         3.48         1.45         1.25         4.41        65.92 
TCGA-HI-7169 TCGA-HI-7170 TCGA-HI-7171 TCGA-J4-8198 TCGA-J4-8200 TCGA-J4-A67M 
       64.08        62.43        66.02        20.19        12.30        16.04 
TCGA-J4-A67N TCGA-J4-A67O TCGA-QU-A6IL TCGA-QU-A6IM TCGA-QU-A6IP 
       16.54        16.14         3.19        41.00        65.88 

  PTEN MUTATED PTEN WILD-TYPE 
          1.02           0.30 
  PTEN MUTATED PTEN WILD-TYPE 
         33.01          66.12 
  PTEN MUTATED PTEN WILD-TYPE 
          3.32          21.96 
[1] "1.0 - 33.0 (3.3)"  "0.3 - 66.1 (22.0)"
    TCGA-CH-5737     TCGA-CH-5738     TCGA-CH-5739     TCGA-CH-5740 
  "PTEN MUTATED" "PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" 
    TCGA-CH-5741     TCGA-CH-5743     TCGA-CH-5744     TCGA-CH-5745 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-CH-5746     TCGA-CH-5748     TCGA-CH-5750     TCGA-CH-5751 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-CH-5752     TCGA-CH-5753     TCGA-CH-5754     TCGA-CH-5761 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-CH-5762     TCGA-CH-5763     TCGA-CH-5764     TCGA-CH-5765 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-CH-5766     TCGA-CH-5767     TCGA-CH-5768     TCGA-CH-5769 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-CH-5771     TCGA-CH-5772     TCGA-CH-5788     TCGA-CH-5789 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-CH-5790     TCGA-CH-5791     TCGA-CH-5792     TCGA-CH-5794 
"PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-EJ-5494     TCGA-EJ-5495     TCGA-EJ-5496     TCGA-EJ-5497 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-EJ-5498     TCGA-EJ-5499     TCGA-EJ-5501     TCGA-EJ-5502 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-EJ-5503     TCGA-EJ-5504     TCGA-EJ-5505     TCGA-EJ-5506 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-EJ-5507     TCGA-EJ-5508     TCGA-EJ-5509     TCGA-EJ-5510 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-EJ-5511     TCGA-EJ-5512     TCGA-EJ-5514     TCGA-EJ-5515 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-EJ-5516     TCGA-EJ-5517     TCGA-EJ-5518     TCGA-EJ-5519 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-EJ-5521     TCGA-EJ-5522     TCGA-EJ-5524     TCGA-EJ-5525 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-EJ-5526     TCGA-EJ-5527     TCGA-EJ-5530     TCGA-EJ-5531 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-EJ-5532     TCGA-EJ-5542     TCGA-EJ-7115     TCGA-EJ-7123 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-EJ-7125     TCGA-EJ-7314     TCGA-EJ-7315     TCGA-EJ-7317 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-EJ-7321     TCGA-EJ-7327     TCGA-EJ-7328     TCGA-EJ-7330 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-EJ-7331     TCGA-EJ-7781     TCGA-EJ-7782     TCGA-EJ-7783 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-EJ-7784     TCGA-EJ-7785     TCGA-EJ-7786     TCGA-EJ-7788 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-EJ-7789     TCGA-EJ-7791     TCGA-EJ-7792     TCGA-EJ-7793 
"PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-EJ-7794     TCGA-EJ-7797     TCGA-EJ-8468     TCGA-EJ-8469 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-EJ-8470     TCGA-EJ-8472     TCGA-EJ-8474     TCGA-EJ-A46B 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-EJ-A46D     TCGA-EJ-A46E     TCGA-EJ-A46F     TCGA-EJ-A46G 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-EJ-A46H     TCGA-EJ-A46I     TCGA-FC-7708     TCGA-FC-7961 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" 
    TCGA-FC-A4JI     TCGA-FC-A5OB     TCGA-FC-A66V     TCGA-FC-A6HD 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-G9-6329     TCGA-G9-6332     TCGA-G9-6333     TCGA-G9-6336 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-G9-6338     TCGA-G9-6339     TCGA-G9-6342     TCGA-G9-6343 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-G9-6347     TCGA-G9-6348     TCGA-G9-6351     TCGA-G9-6353 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-G9-6354     TCGA-G9-6356     TCGA-G9-6361     TCGA-G9-6362 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-G9-6363     TCGA-G9-6364     TCGA-G9-6365     TCGA-G9-6366 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" 
    TCGA-G9-6367     TCGA-G9-6369     TCGA-G9-6370     TCGA-G9-6371 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-G9-6373     TCGA-G9-6377     TCGA-G9-6378     TCGA-G9-6379 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-G9-6384     TCGA-G9-6385     TCGA-G9-6494     TCGA-G9-6496 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-G9-6498     TCGA-G9-6499     TCGA-G9-7510     TCGA-G9-7519 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-G9-7521     TCGA-G9-7522     TCGA-G9-7523     TCGA-G9-7525 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-H9-7775     TCGA-H9-A6BX     TCGA-H9-A6BY     TCGA-HC-7075 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-HC-7077     TCGA-HC-7078     TCGA-HC-7079     TCGA-HC-7080 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-HC-7209     TCGA-HC-7211     TCGA-HC-7212     TCGA-HC-7213 
"PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE" 
    TCGA-HC-7230     TCGA-HC-7231     TCGA-HC-7233     TCGA-HC-7736 
  "PTEN MUTATED" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-HC-7737     TCGA-HC-7740     TCGA-HC-7742     TCGA-HC-7744 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-HC-7747     TCGA-HC-7748     TCGA-HC-7749     TCGA-HC-7750 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-HC-7752     TCGA-HC-7817     TCGA-HC-7818     TCGA-HC-7821 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-HC-8216     TCGA-HC-8265     TCGA-HC-A48F     TCGA-HC-A4ZV 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-HC-A632     TCGA-HC-A6AL     TCGA-HC-A6AO     TCGA-HC-A6AP 
"PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-HC-A6AQ     TCGA-HC-A6AS     TCGA-HC-A6HX     TCGA-HC-A6HY 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-HI-7168     TCGA-HI-7169     TCGA-HI-7170     TCGA-HI-7171 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-J4-8198     TCGA-J4-8200     TCGA-J4-A67M     TCGA-J4-A67N 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-J4-A67O     TCGA-QU-A6IL     TCGA-QU-A6IM     TCGA-QU-A6IP 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-CH-5737     TCGA-CH-5738     TCGA-CH-5739     TCGA-CH-5740 
  "PTEN MUTATED" "PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" 
    TCGA-CH-5741     TCGA-CH-5743     TCGA-CH-5744     TCGA-CH-5745 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-CH-5746     TCGA-CH-5748     TCGA-CH-5750     TCGA-CH-5751 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-CH-5752     TCGA-CH-5753     TCGA-CH-5754     TCGA-CH-5761 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-CH-5762     TCGA-CH-5763     TCGA-CH-5764     TCGA-CH-5765 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-CH-5766     TCGA-CH-5767     TCGA-CH-5768     TCGA-CH-5769 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-CH-5771     TCGA-CH-5772     TCGA-CH-5788     TCGA-CH-5789 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-CH-5790     TCGA-CH-5791     TCGA-CH-5792     TCGA-CH-5794 
"PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-EJ-5494     TCGA-EJ-5495     TCGA-EJ-5496     TCGA-EJ-5497 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-EJ-5498     TCGA-EJ-5499     TCGA-EJ-5501     TCGA-EJ-5502 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-EJ-5503     TCGA-EJ-5504     TCGA-EJ-5505     TCGA-EJ-5506 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-EJ-5507     TCGA-EJ-5508     TCGA-EJ-5509     TCGA-EJ-5510 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-EJ-5511     TCGA-EJ-5512     TCGA-EJ-5514     TCGA-EJ-5515 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-EJ-5516     TCGA-EJ-5517     TCGA-EJ-5518     TCGA-EJ-5519 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-EJ-5521     TCGA-EJ-5522     TCGA-EJ-5524     TCGA-EJ-5525 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-EJ-5526     TCGA-EJ-5527     TCGA-EJ-5530     TCGA-EJ-5531 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-EJ-5532     TCGA-EJ-5542     TCGA-EJ-7115     TCGA-EJ-7123 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-EJ-7125     TCGA-EJ-7314     TCGA-EJ-7315     TCGA-EJ-7317 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-EJ-7321     TCGA-EJ-7327     TCGA-EJ-7328     TCGA-EJ-7330 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-EJ-7331     TCGA-EJ-7781     TCGA-EJ-7782     TCGA-EJ-7783 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-EJ-7784     TCGA-EJ-7785     TCGA-EJ-7786     TCGA-EJ-7788 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-EJ-7789     TCGA-EJ-7791     TCGA-EJ-7792     TCGA-EJ-7793 
"PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-EJ-7794     TCGA-EJ-7797     TCGA-EJ-8468     TCGA-EJ-8469 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-EJ-8470     TCGA-EJ-8472     TCGA-EJ-8474     TCGA-EJ-A46B 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-EJ-A46D     TCGA-EJ-A46E     TCGA-EJ-A46F     TCGA-EJ-A46G 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-EJ-A46H     TCGA-EJ-A46I     TCGA-FC-7708     TCGA-FC-7961 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" 
    TCGA-FC-A4JI     TCGA-FC-A5OB     TCGA-FC-A66V     TCGA-FC-A6HD 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-G9-6329     TCGA-G9-6332     TCGA-G9-6333     TCGA-G9-6336 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-G9-6338     TCGA-G9-6339     TCGA-G9-6342     TCGA-G9-6343 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-G9-6347     TCGA-G9-6348     TCGA-G9-6351     TCGA-G9-6353 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-G9-6354     TCGA-G9-6356     TCGA-G9-6361     TCGA-G9-6362 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-G9-6363     TCGA-G9-6364     TCGA-G9-6365     TCGA-G9-6366 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" 
    TCGA-G9-6367     TCGA-G9-6369     TCGA-G9-6370     TCGA-G9-6371 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-G9-6373     TCGA-G9-6377     TCGA-G9-6378     TCGA-G9-6379 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-G9-6384     TCGA-G9-6385     TCGA-G9-6494     TCGA-G9-6496 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-G9-6498     TCGA-G9-6499     TCGA-G9-7510     TCGA-G9-7519 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-G9-7521     TCGA-G9-7522     TCGA-G9-7523     TCGA-G9-7525 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-H9-7775     TCGA-H9-A6BX     TCGA-H9-A6BY     TCGA-HC-7075 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-HC-7077     TCGA-HC-7078     TCGA-HC-7079     TCGA-HC-7080 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-HC-7209     TCGA-HC-7211     TCGA-HC-7212     TCGA-HC-7213 
"PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE" 
    TCGA-HC-7230     TCGA-HC-7231     TCGA-HC-7233     TCGA-HC-7736 
  "PTEN MUTATED" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-HC-7737     TCGA-HC-7740     TCGA-HC-7742     TCGA-HC-7744 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-HC-7747     TCGA-HC-7748     TCGA-HC-7749     TCGA-HC-7750 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-HC-7752     TCGA-HC-7817     TCGA-HC-7818     TCGA-HC-7821 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-HC-8216     TCGA-HC-8265     TCGA-HC-A48F     TCGA-HC-A4ZV 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-HC-A632     TCGA-HC-A6AL     TCGA-HC-A6AO     TCGA-HC-A6AP 
"PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-HC-A6AQ     TCGA-HC-A6AS     TCGA-HC-A6HX     TCGA-HC-A6HY 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-HI-7168     TCGA-HI-7169     TCGA-HI-7170     TCGA-HI-7171 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-J4-8198     TCGA-J4-8200     TCGA-J4-A67M     TCGA-J4-A67N 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-J4-A67O     TCGA-QU-A6IL     TCGA-QU-A6IM     TCGA-QU-A6IP 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-CH-5737     TCGA-CH-5738     TCGA-CH-5739     TCGA-CH-5740 
  "PTEN MUTATED" "PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" 
    TCGA-CH-5741     TCGA-CH-5743     TCGA-CH-5744     TCGA-CH-5745 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-CH-5746     TCGA-CH-5748     TCGA-CH-5750     TCGA-CH-5751 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-CH-5752     TCGA-CH-5753     TCGA-CH-5754     TCGA-CH-5761 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-CH-5762     TCGA-CH-5763     TCGA-CH-5764     TCGA-CH-5765 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-CH-5766     TCGA-CH-5767     TCGA-CH-5768     TCGA-CH-5769 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-CH-5771     TCGA-CH-5772     TCGA-CH-5788     TCGA-CH-5789 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-CH-5790     TCGA-CH-5791     TCGA-CH-5792     TCGA-CH-5794 
"PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-EJ-5494     TCGA-EJ-5495     TCGA-EJ-5496     TCGA-EJ-5497 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-EJ-5498     TCGA-EJ-5499     TCGA-EJ-5501     TCGA-EJ-5502 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-EJ-5503     TCGA-EJ-5504     TCGA-EJ-5505     TCGA-EJ-5506 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-EJ-5507     TCGA-EJ-5508     TCGA-EJ-5509     TCGA-EJ-5510 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-EJ-5511     TCGA-EJ-5512     TCGA-EJ-5514     TCGA-EJ-5515 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-EJ-5516     TCGA-EJ-5517     TCGA-EJ-5518     TCGA-EJ-5519 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-EJ-5521     TCGA-EJ-5522     TCGA-EJ-5524     TCGA-EJ-5525 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-EJ-5526     TCGA-EJ-5527     TCGA-EJ-5530     TCGA-EJ-5531 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-EJ-5532     TCGA-EJ-5542     TCGA-EJ-7115     TCGA-EJ-7123 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-EJ-7125     TCGA-EJ-7314     TCGA-EJ-7315     TCGA-EJ-7317 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-EJ-7321     TCGA-EJ-7327     TCGA-EJ-7328     TCGA-EJ-7330 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-EJ-7331     TCGA-EJ-7781     TCGA-EJ-7782     TCGA-EJ-7783 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-EJ-7784     TCGA-EJ-7785     TCGA-EJ-7786     TCGA-EJ-7788 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-EJ-7789     TCGA-EJ-7791     TCGA-EJ-7792     TCGA-EJ-7793 
"PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-EJ-7794     TCGA-EJ-7797     TCGA-EJ-8468     TCGA-EJ-8469 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-EJ-8470     TCGA-EJ-8472     TCGA-EJ-8474     TCGA-EJ-A46B 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-EJ-A46D     TCGA-EJ-A46E     TCGA-EJ-A46F     TCGA-EJ-A46G 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-EJ-A46H     TCGA-EJ-A46I     TCGA-FC-7708     TCGA-FC-7961 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" 
    TCGA-FC-A4JI     TCGA-FC-A5OB     TCGA-FC-A66V     TCGA-FC-A6HD 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-G9-6329     TCGA-G9-6332     TCGA-G9-6333     TCGA-G9-6336 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-G9-6338     TCGA-G9-6339     TCGA-G9-6342     TCGA-G9-6343 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-G9-6347     TCGA-G9-6348     TCGA-G9-6351     TCGA-G9-6353 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-G9-6354     TCGA-G9-6356     TCGA-G9-6361     TCGA-G9-6362 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-G9-6363     TCGA-G9-6364     TCGA-G9-6365     TCGA-G9-6366 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" 
    TCGA-G9-6367     TCGA-G9-6369     TCGA-G9-6370     TCGA-G9-6371 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-G9-6373     TCGA-G9-6377     TCGA-G9-6378     TCGA-G9-6379 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-G9-6384     TCGA-G9-6385     TCGA-G9-6494     TCGA-G9-6496 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-G9-6498     TCGA-G9-6499     TCGA-G9-7510     TCGA-G9-7519 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-G9-7521     TCGA-G9-7522     TCGA-G9-7523     TCGA-G9-7525 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-H9-7775     TCGA-H9-A6BX     TCGA-H9-A6BY     TCGA-HC-7075 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-HC-7077     TCGA-HC-7078     TCGA-HC-7079     TCGA-HC-7080 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-HC-7209     TCGA-HC-7211     TCGA-HC-7212     TCGA-HC-7213 
"PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE" 
    TCGA-HC-7230     TCGA-HC-7231     TCGA-HC-7233     TCGA-HC-7736 
  "PTEN MUTATED" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-HC-7737     TCGA-HC-7740     TCGA-HC-7742     TCGA-HC-7744 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-HC-7747     TCGA-HC-7748     TCGA-HC-7749     TCGA-HC-7750 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-HC-7752     TCGA-HC-7817     TCGA-HC-7818     TCGA-HC-7821 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-HC-8216     TCGA-HC-8265     TCGA-HC-A48F     TCGA-HC-A4ZV 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-HC-A632     TCGA-HC-A6AL     TCGA-HC-A6AO     TCGA-HC-A6AP 
"PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-HC-A6AQ     TCGA-HC-A6AS     TCGA-HC-A6HX     TCGA-HC-A6HY 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-HI-7168     TCGA-HI-7169     TCGA-HI-7170     TCGA-HI-7171 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-J4-8198     TCGA-J4-8200     TCGA-J4-A67M     TCGA-J4-A67N 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-J4-A67O     TCGA-QU-A6IL     TCGA-QU-A6IM     TCGA-QU-A6IP 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
[1] "hr=" "1"  
D5V2, continuous
                vv
clus              T2  T3  T4
  PTEN MUTATED     6   3   0
  PTEN WILD-TYPE  82 102   5
D5V3, multiclass
    clus
vv   PTEN MUTATED PTEN WILD-TYPE
  T2            6             82
  T3            3            102
  T4            0              5
D5V4, binary
                cls
clus               0   1
  PTEN MUTATED     8   0
  PTEN WILD-TYPE 146  17
[1] "tbl2"
                cls
clus             [,1] [,2]
  PTEN MUTATED      8    0
  PTEN WILD-TYPE  146   17
   clus
vv  PTEN MUTATED PTEN WILD-TYPE
  0            8            146
  1            0             17
                vv
clus              R0  R1  RX
  PTEN MUTATED     6   1   0
  PTEN WILD-TYPE 143  35   5
D5V5, multiclass
    clus
vv   PTEN MUTATED PTEN WILD-TYPE
  R0            6            143
  R1            1             35
  RX            0              5
D5V6, continuous
D5V7, continuous
D5V8, continuous
D5V9, continuous
D5V10, continuous
D5V11, continuous
D5V12, continuous
D5V13, continuous
D5V14, continuous

Clustering(6) Variable = FOXA1 MUTATION ANALYSIS
D6V1, survival
                 sevent
clus2               0   1
  FOXA1 MUTATED    10   0
  FOXA1 WILD-TYPE 189   1
  FOXA1 MUTATED FOXA1 WILD-TYPE 
             10             190 
  FOXA1 MUTATED FOXA1 WILD-TYPE 
              0               1 
$`FOXA1 MUTATED`
TCGA-CH-5737 TCGA-EJ-5494 TCGA-EJ-7330 TCGA-EJ-7782 TCGA-EJ-7789 TCGA-G9-6351 
        2.99        27.16         6.28         2.10        18.15        46.16 
TCGA-HC-8265 TCGA-HC-A6AO TCGA-HC-A6AP TCGA-QU-A6IL 
       15.88         5.49         2.33         3.19 

$`FOXA1 WILD-TYPE`
TCGA-CH-5738 TCGA-CH-5739 TCGA-CH-5740 TCGA-CH-5741 TCGA-CH-5743 TCGA-CH-5744 
        6.97        22.06         1.02        12.99        13.97         1.97 
TCGA-CH-5745 TCGA-CH-5746 TCGA-CH-5748 TCGA-CH-5750 TCGA-CH-5751 TCGA-CH-5752 
        2.99        24.03         1.02        13.02        35.01        31.00 
TCGA-CH-5753 TCGA-CH-5754 TCGA-CH-5761 TCGA-CH-5762 TCGA-CH-5763 TCGA-CH-5764 
        1.02         2.04         0.92        44.02        12.00         1.02 
TCGA-CH-5765 TCGA-CH-5766 TCGA-CH-5767 TCGA-CH-5768 TCGA-CH-5769 TCGA-CH-5771 
       23.01         1.02        15.06        24.03         2.04        13.02 
TCGA-CH-5772 TCGA-CH-5788 TCGA-CH-5789 TCGA-CH-5790 TCGA-CH-5791 TCGA-CH-5792 
       15.98        26.99         9.99        32.02        33.01         2.99 
TCGA-CH-5794 TCGA-EJ-5495 TCGA-EJ-5496 TCGA-EJ-5497 TCGA-EJ-5498 TCGA-EJ-5499 
       29.00        33.11        19.56        13.32        29.79        17.52 
TCGA-EJ-5501 TCGA-EJ-5502 TCGA-EJ-5503 TCGA-EJ-5504 TCGA-EJ-5505 TCGA-EJ-5506 
       30.81         8.05        23.54        28.93        30.31        27.19 
TCGA-EJ-5507 TCGA-EJ-5508 TCGA-EJ-5509 TCGA-EJ-5510 TCGA-EJ-5511 TCGA-EJ-5512 
       23.90        38.93        36.23        36.69        32.02        38.53 
TCGA-EJ-5514 TCGA-EJ-5515 TCGA-EJ-5516 TCGA-EJ-5517 TCGA-EJ-5518 TCGA-EJ-5519 
       36.23        40.77        46.55        47.80        52.27        43.92 
TCGA-EJ-5521 TCGA-EJ-5522 TCGA-EJ-5524 TCGA-EJ-5525 TCGA-EJ-5526 TCGA-EJ-5527 
       51.88        48.07        43.07        36.66        38.76        39.75 
TCGA-EJ-5530 TCGA-EJ-5531 TCGA-EJ-5532 TCGA-EJ-5542 TCGA-EJ-7115 TCGA-EJ-7123 
       41.82        30.28        47.87        29.06        27.02        49.02 
TCGA-EJ-7125 TCGA-EJ-7314 TCGA-EJ-7315 TCGA-EJ-7317 TCGA-EJ-7321 TCGA-EJ-7327 
       61.15         9.70         9.50         9.37         7.66         5.75 
TCGA-EJ-7328 TCGA-EJ-7331 TCGA-EJ-7781 TCGA-EJ-7783 TCGA-EJ-7784 TCGA-EJ-7785 
        5.59         0.30         5.56         4.31         5.49        20.55 
TCGA-EJ-7786 TCGA-EJ-7788 TCGA-EJ-7791 TCGA-EJ-7792 TCGA-EJ-7793 TCGA-EJ-7794 
       14.53         1.71        19.59        17.29         1.41        23.05 
TCGA-EJ-7797 TCGA-EJ-8468 TCGA-EJ-8469 TCGA-EJ-8470 TCGA-EJ-8472 TCGA-EJ-8474 
       12.13        64.47        63.98        26.99        66.12        10.32 
TCGA-EJ-A46B TCGA-EJ-A46D TCGA-EJ-A46E TCGA-EJ-A46F TCGA-EJ-A46G TCGA-EJ-A46H 
        5.33         4.24        17.49         9.83         3.06         7.53 
TCGA-EJ-A46I TCGA-FC-7708 TCGA-FC-7961 TCGA-FC-A4JI TCGA-FC-A5OB TCGA-FC-A66V 
       21.96        28.41        15.42        13.45         8.98        17.23 
TCGA-FC-A6HD TCGA-G9-6329 TCGA-G9-6332 TCGA-G9-6333 TCGA-G9-6336 TCGA-G9-6338 
        1.78        41.62        65.92        65.95        65.98        65.98 
TCGA-G9-6339 TCGA-G9-6342 TCGA-G9-6343 TCGA-G9-6347 TCGA-G9-6348 TCGA-G9-6353 
       65.98        55.76        18.21        56.48        49.81        50.70 
TCGA-G9-6354 TCGA-G9-6356 TCGA-G9-6361 TCGA-G9-6362 TCGA-G9-6363 TCGA-G9-6364 
       49.35        47.15        46.52        47.44        45.30        39.39 
TCGA-G9-6365 TCGA-G9-6366 TCGA-G9-6367 TCGA-G9-6369 TCGA-G9-6370 TCGA-G9-6371 
       44.81         3.32        40.18        39.95        38.01        40.31 
TCGA-G9-6373 TCGA-G9-6377 TCGA-G9-6378 TCGA-G9-6379 TCGA-G9-6384 TCGA-G9-6385 
       26.66        31.50        37.97        45.80        25.15        27.29 
TCGA-G9-6494 TCGA-G9-6496 TCGA-G9-6498 TCGA-G9-6499 TCGA-G9-7510 TCGA-G9-7519 
       58.22        56.75        52.87        50.73        38.96        27.91 
TCGA-G9-7521 TCGA-G9-7522 TCGA-G9-7523 TCGA-G9-7525 TCGA-H9-7775 TCGA-H9-A6BX 
       30.97        21.30        28.18        32.68         6.08        18.74 
TCGA-H9-A6BY TCGA-HC-7075 TCGA-HC-7077 TCGA-HC-7078 TCGA-HC-7079 TCGA-HC-7080 
        3.68        19.76        65.98         5.33         2.93         2.01 
TCGA-HC-7209 TCGA-HC-7211 TCGA-HC-7212 TCGA-HC-7213 TCGA-HC-7230 TCGA-HC-7231 
        1.35         0.79        28.60         1.97         1.68         2.37 
TCGA-HC-7233 TCGA-HC-7736 TCGA-HC-7737 TCGA-HC-7740 TCGA-HC-7742 TCGA-HC-7744 
        1.71         0.72         2.10         1.74         1.48         1.68 
TCGA-HC-7747 TCGA-HC-7748 TCGA-HC-7749 TCGA-HC-7750 TCGA-HC-7752 TCGA-HC-7817 
        1.87        26.04         1.97         1.12         3.22         1.05 
TCGA-HC-7818 TCGA-HC-7821 TCGA-HC-8216 TCGA-HC-A48F TCGA-HC-A4ZV TCGA-HC-A632 
        1.48         1.84        22.42         1.51         0.76         2.01 
TCGA-HC-A6AL TCGA-HC-A6AQ TCGA-HC-A6AS TCGA-HC-A6HX TCGA-HC-A6HY TCGA-HI-7168 
        2.20         3.48         1.45         1.25         4.41        65.92 
TCGA-HI-7169 TCGA-HI-7170 TCGA-HI-7171 TCGA-J4-8198 TCGA-J4-8200 TCGA-J4-A67M 
       64.08        62.43        66.02        20.19        12.30        16.04 
TCGA-J4-A67N TCGA-J4-A67O TCGA-QU-A6IM TCGA-QU-A6IP 
       16.54        16.14        41.00        65.88 

  FOXA1 MUTATED FOXA1 WILD-TYPE 
            2.1             0.3 
  FOXA1 MUTATED FOXA1 WILD-TYPE 
          46.16           66.12 
  FOXA1 MUTATED FOXA1 WILD-TYPE 
          5.885          22.010 
[1] "2.1 - 46.2 (5.9)"  "0.3 - 66.1 (22.0)"
     TCGA-CH-5737      TCGA-CH-5738      TCGA-CH-5739      TCGA-CH-5740 
  "FOXA1 MUTATED" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" 
     TCGA-CH-5741      TCGA-CH-5743      TCGA-CH-5744      TCGA-CH-5745 
"FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" 
     TCGA-CH-5746      TCGA-CH-5748      TCGA-CH-5750      TCGA-CH-5751 
"FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" 
     TCGA-CH-5752      TCGA-CH-5753      TCGA-CH-5754      TCGA-CH-5761 
"FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" 
     TCGA-CH-5762      TCGA-CH-5763      TCGA-CH-5764      TCGA-CH-5765 
"FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" 
     TCGA-CH-5766      TCGA-CH-5767      TCGA-CH-5768      TCGA-CH-5769 
"FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" 
     TCGA-CH-5771      TCGA-CH-5772      TCGA-CH-5788      TCGA-CH-5789 
"FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" 
     TCGA-CH-5790      TCGA-CH-5791      TCGA-CH-5792      TCGA-CH-5794 
"FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" 
     TCGA-EJ-5494      TCGA-EJ-5495      TCGA-EJ-5496      TCGA-EJ-5497 
  "FOXA1 MUTATED" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" 
     TCGA-EJ-5498      TCGA-EJ-5499      TCGA-EJ-5501      TCGA-EJ-5502 
"FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" 
     TCGA-EJ-5503      TCGA-EJ-5504      TCGA-EJ-5505      TCGA-EJ-5506 
"FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" 
     TCGA-EJ-5507      TCGA-EJ-5508      TCGA-EJ-5509      TCGA-EJ-5510 
"FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" 
     TCGA-EJ-5511      TCGA-EJ-5512      TCGA-EJ-5514      TCGA-EJ-5515 
"FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" 
     TCGA-EJ-5516      TCGA-EJ-5517      TCGA-EJ-5518      TCGA-EJ-5519 
"FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" 
     TCGA-EJ-5521      TCGA-EJ-5522      TCGA-EJ-5524      TCGA-EJ-5525 
"FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" 
     TCGA-EJ-5526      TCGA-EJ-5527      TCGA-EJ-5530      TCGA-EJ-5531 
"FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" 
     TCGA-EJ-5532      TCGA-EJ-5542      TCGA-EJ-7115      TCGA-EJ-7123 
"FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" 
     TCGA-EJ-7125      TCGA-EJ-7314      TCGA-EJ-7315      TCGA-EJ-7317 
"FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" 
     TCGA-EJ-7321      TCGA-EJ-7327      TCGA-EJ-7328      TCGA-EJ-7330 
"FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE"   "FOXA1 MUTATED" 
     TCGA-EJ-7331      TCGA-EJ-7781      TCGA-EJ-7782      TCGA-EJ-7783 
"FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE"   "FOXA1 MUTATED" "FOXA1 WILD-TYPE" 
     TCGA-EJ-7784      TCGA-EJ-7785      TCGA-EJ-7786      TCGA-EJ-7788 
"FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" 
     TCGA-EJ-7789      TCGA-EJ-7791      TCGA-EJ-7792      TCGA-EJ-7793 
  "FOXA1 MUTATED" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" 
     TCGA-EJ-7794      TCGA-EJ-7797      TCGA-EJ-8468      TCGA-EJ-8469 
"FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" 
     TCGA-EJ-8470      TCGA-EJ-8472      TCGA-EJ-8474      TCGA-EJ-A46B 
"FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" 
     TCGA-EJ-A46D      TCGA-EJ-A46E      TCGA-EJ-A46F      TCGA-EJ-A46G 
"FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" 
     TCGA-EJ-A46H      TCGA-EJ-A46I      TCGA-FC-7708      TCGA-FC-7961 
"FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" 
     TCGA-FC-A4JI      TCGA-FC-A5OB      TCGA-FC-A66V      TCGA-FC-A6HD 
"FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" 
     TCGA-G9-6329      TCGA-G9-6332      TCGA-G9-6333      TCGA-G9-6336 
"FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" 
     TCGA-G9-6338      TCGA-G9-6339      TCGA-G9-6342      TCGA-G9-6343 
"FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" 
     TCGA-G9-6347      TCGA-G9-6348      TCGA-G9-6351      TCGA-G9-6353 
"FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE"   "FOXA1 MUTATED" "FOXA1 WILD-TYPE" 
     TCGA-G9-6354      TCGA-G9-6356      TCGA-G9-6361      TCGA-G9-6362 
"FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" 
     TCGA-G9-6363      TCGA-G9-6364      TCGA-G9-6365      TCGA-G9-6366 
"FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" 
     TCGA-G9-6367      TCGA-G9-6369      TCGA-G9-6370      TCGA-G9-6371 
"FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" 
     TCGA-G9-6373      TCGA-G9-6377      TCGA-G9-6378      TCGA-G9-6379 
"FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" 
     TCGA-G9-6384      TCGA-G9-6385      TCGA-G9-6494      TCGA-G9-6496 
"FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" 
     TCGA-G9-6498      TCGA-G9-6499      TCGA-G9-7510      TCGA-G9-7519 
"FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" 
     TCGA-G9-7521      TCGA-G9-7522      TCGA-G9-7523      TCGA-G9-7525 
"FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" 
     TCGA-H9-7775      TCGA-H9-A6BX      TCGA-H9-A6BY      TCGA-HC-7075 
"FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" 
     TCGA-HC-7077      TCGA-HC-7078      TCGA-HC-7079      TCGA-HC-7080 
"FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" 
     TCGA-HC-7209      TCGA-HC-7211      TCGA-HC-7212      TCGA-HC-7213 
"FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" 
     TCGA-HC-7230      TCGA-HC-7231      TCGA-HC-7233      TCGA-HC-7736 
"FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" 
     TCGA-HC-7737      TCGA-HC-7740      TCGA-HC-7742      TCGA-HC-7744 
"FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" 
     TCGA-HC-7747      TCGA-HC-7748      TCGA-HC-7749      TCGA-HC-7750 
"FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" 
     TCGA-HC-7752      TCGA-HC-7817      TCGA-HC-7818      TCGA-HC-7821 
"FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" 
     TCGA-HC-8216      TCGA-HC-8265      TCGA-HC-A48F      TCGA-HC-A4ZV 
"FOXA1 WILD-TYPE"   "FOXA1 MUTATED" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" 
     TCGA-HC-A632      TCGA-HC-A6AL      TCGA-HC-A6AO      TCGA-HC-A6AP 
"FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE"   "FOXA1 MUTATED"   "FOXA1 MUTATED" 
     TCGA-HC-A6AQ      TCGA-HC-A6AS      TCGA-HC-A6HX      TCGA-HC-A6HY 
"FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" 
     TCGA-HI-7168      TCGA-HI-7169      TCGA-HI-7170      TCGA-HI-7171 
"FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" 
     TCGA-J4-8198      TCGA-J4-8200      TCGA-J4-A67M      TCGA-J4-A67N 
"FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" 
     TCGA-J4-A67O      TCGA-QU-A6IL      TCGA-QU-A6IM      TCGA-QU-A6IP 
"FOXA1 WILD-TYPE"   "FOXA1 MUTATED" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" 
     TCGA-CH-5737      TCGA-CH-5738      TCGA-CH-5739      TCGA-CH-5740 
  "FOXA1 MUTATED" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" 
     TCGA-CH-5741      TCGA-CH-5743      TCGA-CH-5744      TCGA-CH-5745 
"FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" 
     TCGA-CH-5746      TCGA-CH-5748      TCGA-CH-5750      TCGA-CH-5751 
"FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" 
     TCGA-CH-5752      TCGA-CH-5753      TCGA-CH-5754      TCGA-CH-5761 
"FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" 
     TCGA-CH-5762      TCGA-CH-5763      TCGA-CH-5764      TCGA-CH-5765 
"FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" 
     TCGA-CH-5766      TCGA-CH-5767      TCGA-CH-5768      TCGA-CH-5769 
"FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" 
     TCGA-CH-5771      TCGA-CH-5772      TCGA-CH-5788      TCGA-CH-5789 
"FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" 
     TCGA-CH-5790      TCGA-CH-5791      TCGA-CH-5792      TCGA-CH-5794 
"FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" 
     TCGA-EJ-5494      TCGA-EJ-5495      TCGA-EJ-5496      TCGA-EJ-5497 
  "FOXA1 MUTATED" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" 
     TCGA-EJ-5498      TCGA-EJ-5499      TCGA-EJ-5501      TCGA-EJ-5502 
"FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" 
     TCGA-EJ-5503      TCGA-EJ-5504      TCGA-EJ-5505      TCGA-EJ-5506 
"FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" 
     TCGA-EJ-5507      TCGA-EJ-5508      TCGA-EJ-5509      TCGA-EJ-5510 
"FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" 
     TCGA-EJ-5511      TCGA-EJ-5512      TCGA-EJ-5514      TCGA-EJ-5515 
"FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" 
     TCGA-EJ-5516      TCGA-EJ-5517      TCGA-EJ-5518      TCGA-EJ-5519 
"FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" 
     TCGA-EJ-5521      TCGA-EJ-5522      TCGA-EJ-5524      TCGA-EJ-5525 
"FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" 
     TCGA-EJ-5526      TCGA-EJ-5527      TCGA-EJ-5530      TCGA-EJ-5531 
"FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" 
     TCGA-EJ-5532      TCGA-EJ-5542      TCGA-EJ-7115      TCGA-EJ-7123 
"FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" 
     TCGA-EJ-7125      TCGA-EJ-7314      TCGA-EJ-7315      TCGA-EJ-7317 
"FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" 
     TCGA-EJ-7321      TCGA-EJ-7327      TCGA-EJ-7328      TCGA-EJ-7330 
"FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE"   "FOXA1 MUTATED" 
     TCGA-EJ-7331      TCGA-EJ-7781      TCGA-EJ-7782      TCGA-EJ-7783 
"FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE"   "FOXA1 MUTATED" "FOXA1 WILD-TYPE" 
     TCGA-EJ-7784      TCGA-EJ-7785      TCGA-EJ-7786      TCGA-EJ-7788 
"FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" 
     TCGA-EJ-7789      TCGA-EJ-7791      TCGA-EJ-7792      TCGA-EJ-7793 
  "FOXA1 MUTATED" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" 
     TCGA-EJ-7794      TCGA-EJ-7797      TCGA-EJ-8468      TCGA-EJ-8469 
"FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" 
     TCGA-EJ-8470      TCGA-EJ-8472      TCGA-EJ-8474      TCGA-EJ-A46B 
"FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" 
     TCGA-EJ-A46D      TCGA-EJ-A46E      TCGA-EJ-A46F      TCGA-EJ-A46G 
"FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" 
     TCGA-EJ-A46H      TCGA-EJ-A46I      TCGA-FC-7708      TCGA-FC-7961 
"FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" 
     TCGA-FC-A4JI      TCGA-FC-A5OB      TCGA-FC-A66V      TCGA-FC-A6HD 
"FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" 
     TCGA-G9-6329      TCGA-G9-6332      TCGA-G9-6333      TCGA-G9-6336 
"FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" 
     TCGA-G9-6338      TCGA-G9-6339      TCGA-G9-6342      TCGA-G9-6343 
"FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" 
     TCGA-G9-6347      TCGA-G9-6348      TCGA-G9-6351      TCGA-G9-6353 
"FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE"   "FOXA1 MUTATED" "FOXA1 WILD-TYPE" 
     TCGA-G9-6354      TCGA-G9-6356      TCGA-G9-6361      TCGA-G9-6362 
"FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" 
     TCGA-G9-6363      TCGA-G9-6364      TCGA-G9-6365      TCGA-G9-6366 
"FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" 
     TCGA-G9-6367      TCGA-G9-6369      TCGA-G9-6370      TCGA-G9-6371 
"FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" 
     TCGA-G9-6373      TCGA-G9-6377      TCGA-G9-6378      TCGA-G9-6379 
"FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" 
     TCGA-G9-6384      TCGA-G9-6385      TCGA-G9-6494      TCGA-G9-6496 
"FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" 
     TCGA-G9-6498      TCGA-G9-6499      TCGA-G9-7510      TCGA-G9-7519 
"FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" 
     TCGA-G9-7521      TCGA-G9-7522      TCGA-G9-7523      TCGA-G9-7525 
"FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" 
     TCGA-H9-7775      TCGA-H9-A6BX      TCGA-H9-A6BY      TCGA-HC-7075 
"FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" 
     TCGA-HC-7077      TCGA-HC-7078      TCGA-HC-7079      TCGA-HC-7080 
"FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" 
     TCGA-HC-7209      TCGA-HC-7211      TCGA-HC-7212      TCGA-HC-7213 
"FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" 
     TCGA-HC-7230      TCGA-HC-7231      TCGA-HC-7233      TCGA-HC-7736 
"FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" 
     TCGA-HC-7737      TCGA-HC-7740      TCGA-HC-7742      TCGA-HC-7744 
"FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" 
     TCGA-HC-7747      TCGA-HC-7748      TCGA-HC-7749      TCGA-HC-7750 
"FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" 
     TCGA-HC-7752      TCGA-HC-7817      TCGA-HC-7818      TCGA-HC-7821 
"FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" 
     TCGA-HC-8216      TCGA-HC-8265      TCGA-HC-A48F      TCGA-HC-A4ZV 
"FOXA1 WILD-TYPE"   "FOXA1 MUTATED" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" 
     TCGA-HC-A632      TCGA-HC-A6AL      TCGA-HC-A6AO      TCGA-HC-A6AP 
"FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE"   "FOXA1 MUTATED"   "FOXA1 MUTATED" 
     TCGA-HC-A6AQ      TCGA-HC-A6AS      TCGA-HC-A6HX      TCGA-HC-A6HY 
"FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" 
     TCGA-HI-7168      TCGA-HI-7169      TCGA-HI-7170      TCGA-HI-7171 
"FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" 
     TCGA-J4-8198      TCGA-J4-8200      TCGA-J4-A67M      TCGA-J4-A67N 
"FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" 
     TCGA-J4-A67O      TCGA-QU-A6IL      TCGA-QU-A6IM      TCGA-QU-A6IP 
"FOXA1 WILD-TYPE"   "FOXA1 MUTATED" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" 
     TCGA-CH-5737      TCGA-CH-5738      TCGA-CH-5739      TCGA-CH-5740 
  "FOXA1 MUTATED" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" 
     TCGA-CH-5741      TCGA-CH-5743      TCGA-CH-5744      TCGA-CH-5745 
"FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" 
     TCGA-CH-5746      TCGA-CH-5748      TCGA-CH-5750      TCGA-CH-5751 
"FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" 
     TCGA-CH-5752      TCGA-CH-5753      TCGA-CH-5754      TCGA-CH-5761 
"FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" 
     TCGA-CH-5762      TCGA-CH-5763      TCGA-CH-5764      TCGA-CH-5765 
"FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" 
     TCGA-CH-5766      TCGA-CH-5767      TCGA-CH-5768      TCGA-CH-5769 
"FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" 
     TCGA-CH-5771      TCGA-CH-5772      TCGA-CH-5788      TCGA-CH-5789 
"FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" 
     TCGA-CH-5790      TCGA-CH-5791      TCGA-CH-5792      TCGA-CH-5794 
"FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" 
     TCGA-EJ-5494      TCGA-EJ-5495      TCGA-EJ-5496      TCGA-EJ-5497 
  "FOXA1 MUTATED" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" 
     TCGA-EJ-5498      TCGA-EJ-5499      TCGA-EJ-5501      TCGA-EJ-5502 
"FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" 
     TCGA-EJ-5503      TCGA-EJ-5504      TCGA-EJ-5505      TCGA-EJ-5506 
"FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" 
     TCGA-EJ-5507      TCGA-EJ-5508      TCGA-EJ-5509      TCGA-EJ-5510 
"FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" 
     TCGA-EJ-5511      TCGA-EJ-5512      TCGA-EJ-5514      TCGA-EJ-5515 
"FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" 
     TCGA-EJ-5516      TCGA-EJ-5517      TCGA-EJ-5518      TCGA-EJ-5519 
"FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" 
     TCGA-EJ-5521      TCGA-EJ-5522      TCGA-EJ-5524      TCGA-EJ-5525 
"FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" 
     TCGA-EJ-5526      TCGA-EJ-5527      TCGA-EJ-5530      TCGA-EJ-5531 
"FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" 
     TCGA-EJ-5532      TCGA-EJ-5542      TCGA-EJ-7115      TCGA-EJ-7123 
"FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" 
     TCGA-EJ-7125      TCGA-EJ-7314      TCGA-EJ-7315      TCGA-EJ-7317 
"FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" 
     TCGA-EJ-7321      TCGA-EJ-7327      TCGA-EJ-7328      TCGA-EJ-7330 
"FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE"   "FOXA1 MUTATED" 
     TCGA-EJ-7331      TCGA-EJ-7781      TCGA-EJ-7782      TCGA-EJ-7783 
"FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE"   "FOXA1 MUTATED" "FOXA1 WILD-TYPE" 
     TCGA-EJ-7784      TCGA-EJ-7785      TCGA-EJ-7786      TCGA-EJ-7788 
"FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" 
     TCGA-EJ-7789      TCGA-EJ-7791      TCGA-EJ-7792      TCGA-EJ-7793 
  "FOXA1 MUTATED" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" 
     TCGA-EJ-7794      TCGA-EJ-7797      TCGA-EJ-8468      TCGA-EJ-8469 
"FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" 
     TCGA-EJ-8470      TCGA-EJ-8472      TCGA-EJ-8474      TCGA-EJ-A46B 
"FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" 
     TCGA-EJ-A46D      TCGA-EJ-A46E      TCGA-EJ-A46F      TCGA-EJ-A46G 
"FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" 
     TCGA-EJ-A46H      TCGA-EJ-A46I      TCGA-FC-7708      TCGA-FC-7961 
"FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" 
     TCGA-FC-A4JI      TCGA-FC-A5OB      TCGA-FC-A66V      TCGA-FC-A6HD 
"FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" 
     TCGA-G9-6329      TCGA-G9-6332      TCGA-G9-6333      TCGA-G9-6336 
"FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" 
     TCGA-G9-6338      TCGA-G9-6339      TCGA-G9-6342      TCGA-G9-6343 
"FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" 
     TCGA-G9-6347      TCGA-G9-6348      TCGA-G9-6351      TCGA-G9-6353 
"FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE"   "FOXA1 MUTATED" "FOXA1 WILD-TYPE" 
     TCGA-G9-6354      TCGA-G9-6356      TCGA-G9-6361      TCGA-G9-6362 
"FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" 
     TCGA-G9-6363      TCGA-G9-6364      TCGA-G9-6365      TCGA-G9-6366 
"FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" 
     TCGA-G9-6367      TCGA-G9-6369      TCGA-G9-6370      TCGA-G9-6371 
"FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" 
     TCGA-G9-6373      TCGA-G9-6377      TCGA-G9-6378      TCGA-G9-6379 
"FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" 
     TCGA-G9-6384      TCGA-G9-6385      TCGA-G9-6494      TCGA-G9-6496 
"FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" 
     TCGA-G9-6498      TCGA-G9-6499      TCGA-G9-7510      TCGA-G9-7519 
"FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" 
     TCGA-G9-7521      TCGA-G9-7522      TCGA-G9-7523      TCGA-G9-7525 
"FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" 
     TCGA-H9-7775      TCGA-H9-A6BX      TCGA-H9-A6BY      TCGA-HC-7075 
"FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" 
     TCGA-HC-7077      TCGA-HC-7078      TCGA-HC-7079      TCGA-HC-7080 
"FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" 
     TCGA-HC-7209      TCGA-HC-7211      TCGA-HC-7212      TCGA-HC-7213 
"FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" 
     TCGA-HC-7230      TCGA-HC-7231      TCGA-HC-7233      TCGA-HC-7736 
"FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" 
     TCGA-HC-7737      TCGA-HC-7740      TCGA-HC-7742      TCGA-HC-7744 
"FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" 
     TCGA-HC-7747      TCGA-HC-7748      TCGA-HC-7749      TCGA-HC-7750 
"FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" 
     TCGA-HC-7752      TCGA-HC-7817      TCGA-HC-7818      TCGA-HC-7821 
"FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" 
     TCGA-HC-8216      TCGA-HC-8265      TCGA-HC-A48F      TCGA-HC-A4ZV 
"FOXA1 WILD-TYPE"   "FOXA1 MUTATED" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" 
     TCGA-HC-A632      TCGA-HC-A6AL      TCGA-HC-A6AO      TCGA-HC-A6AP 
"FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE"   "FOXA1 MUTATED"   "FOXA1 MUTATED" 
     TCGA-HC-A6AQ      TCGA-HC-A6AS      TCGA-HC-A6HX      TCGA-HC-A6HY 
"FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" 
     TCGA-HI-7168      TCGA-HI-7169      TCGA-HI-7170      TCGA-HI-7171 
"FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" 
     TCGA-J4-8198      TCGA-J4-8200      TCGA-J4-A67M      TCGA-J4-A67N 
"FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" 
     TCGA-J4-A67O      TCGA-QU-A6IL      TCGA-QU-A6IM      TCGA-QU-A6IP 
"FOXA1 WILD-TYPE"   "FOXA1 MUTATED" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" 
[1] "hr=" "1"  
D6V2, continuous
                 vv
clus               T2  T3  T4
  FOXA1 MUTATED     6   4   0
  FOXA1 WILD-TYPE  82 101   5
D6V3, multiclass
    clus
vv   FOXA1 MUTATED FOXA1 WILD-TYPE
  T2             6              82
  T3             4             101
  T4             0               5
D6V4, binary
                 cls
clus                0   1
  FOXA1 MUTATED     7   0
  FOXA1 WILD-TYPE 147  17
[1] "tbl2"
                 cls
clus              [,1] [,2]
  FOXA1 MUTATED      7    0
  FOXA1 WILD-TYPE  147   17
   clus
vv  FOXA1 MUTATED FOXA1 WILD-TYPE
  0             7             147
  1             0              17
                 vv
clus               R0  R1  RX
  FOXA1 MUTATED     7   2   1
  FOXA1 WILD-TYPE 142  34   4
D6V5, multiclass
    clus
vv   FOXA1 MUTATED FOXA1 WILD-TYPE
  R0             7             142
  R1             2              34
  RX             1               4
D6V6, continuous
D6V7, continuous
D6V8, continuous
D6V9, continuous
D6V10, continuous
D6V11, continuous
D6V12, continuous
D6V13, continuous
D6V14, continuous

Clustering(7) Variable = IDH1 MUTATION ANALYSIS
D7V1, survival
                sevent
clus2              0   1
  IDH1 MUTATED     3   0
  IDH1 WILD-TYPE 196   1
  IDH1 MUTATED IDH1 WILD-TYPE 
             3            197 
  IDH1 MUTATED IDH1 WILD-TYPE 
             0              1 
$`IDH1 MUTATED`
TCGA-CH-5772 TCGA-EJ-7125 TCGA-G9-7523 
       15.98        61.15        28.18 

$`IDH1 WILD-TYPE`
TCGA-CH-5737 TCGA-CH-5738 TCGA-CH-5739 TCGA-CH-5740 TCGA-CH-5741 TCGA-CH-5743 
        2.99         6.97        22.06         1.02        12.99        13.97 
TCGA-CH-5744 TCGA-CH-5745 TCGA-CH-5746 TCGA-CH-5748 TCGA-CH-5750 TCGA-CH-5751 
        1.97         2.99        24.03         1.02        13.02        35.01 
TCGA-CH-5752 TCGA-CH-5753 TCGA-CH-5754 TCGA-CH-5761 TCGA-CH-5762 TCGA-CH-5763 
       31.00         1.02         2.04         0.92        44.02        12.00 
TCGA-CH-5764 TCGA-CH-5765 TCGA-CH-5766 TCGA-CH-5767 TCGA-CH-5768 TCGA-CH-5769 
        1.02        23.01         1.02        15.06        24.03         2.04 
TCGA-CH-5771 TCGA-CH-5788 TCGA-CH-5789 TCGA-CH-5790 TCGA-CH-5791 TCGA-CH-5792 
       13.02        26.99         9.99        32.02        33.01         2.99 
TCGA-CH-5794 TCGA-EJ-5494 TCGA-EJ-5495 TCGA-EJ-5496 TCGA-EJ-5497 TCGA-EJ-5498 
       29.00        27.16        33.11        19.56        13.32        29.79 
TCGA-EJ-5499 TCGA-EJ-5501 TCGA-EJ-5502 TCGA-EJ-5503 TCGA-EJ-5504 TCGA-EJ-5505 
       17.52        30.81         8.05        23.54        28.93        30.31 
TCGA-EJ-5506 TCGA-EJ-5507 TCGA-EJ-5508 TCGA-EJ-5509 TCGA-EJ-5510 TCGA-EJ-5511 
       27.19        23.90        38.93        36.23        36.69        32.02 
TCGA-EJ-5512 TCGA-EJ-5514 TCGA-EJ-5515 TCGA-EJ-5516 TCGA-EJ-5517 TCGA-EJ-5518 
       38.53        36.23        40.77        46.55        47.80        52.27 
TCGA-EJ-5519 TCGA-EJ-5521 TCGA-EJ-5522 TCGA-EJ-5524 TCGA-EJ-5525 TCGA-EJ-5526 
       43.92        51.88        48.07        43.07        36.66        38.76 
TCGA-EJ-5527 TCGA-EJ-5530 TCGA-EJ-5531 TCGA-EJ-5532 TCGA-EJ-5542 TCGA-EJ-7115 
       39.75        41.82        30.28        47.87        29.06        27.02 
TCGA-EJ-7123 TCGA-EJ-7314 TCGA-EJ-7315 TCGA-EJ-7317 TCGA-EJ-7321 TCGA-EJ-7327 
       49.02         9.70         9.50         9.37         7.66         5.75 
TCGA-EJ-7328 TCGA-EJ-7330 TCGA-EJ-7331 TCGA-EJ-7781 TCGA-EJ-7782 TCGA-EJ-7783 
        5.59         6.28         0.30         5.56         2.10         4.31 
TCGA-EJ-7784 TCGA-EJ-7785 TCGA-EJ-7786 TCGA-EJ-7788 TCGA-EJ-7789 TCGA-EJ-7791 
        5.49        20.55        14.53         1.71        18.15        19.59 
TCGA-EJ-7792 TCGA-EJ-7793 TCGA-EJ-7794 TCGA-EJ-7797 TCGA-EJ-8468 TCGA-EJ-8469 
       17.29         1.41        23.05        12.13        64.47        63.98 
TCGA-EJ-8470 TCGA-EJ-8472 TCGA-EJ-8474 TCGA-EJ-A46B TCGA-EJ-A46D TCGA-EJ-A46E 
       26.99        66.12        10.32         5.33         4.24        17.49 
TCGA-EJ-A46F TCGA-EJ-A46G TCGA-EJ-A46H TCGA-EJ-A46I TCGA-FC-7708 TCGA-FC-7961 
        9.83         3.06         7.53        21.96        28.41        15.42 
TCGA-FC-A4JI TCGA-FC-A5OB TCGA-FC-A66V TCGA-FC-A6HD TCGA-G9-6329 TCGA-G9-6332 
       13.45         8.98        17.23         1.78        41.62        65.92 
TCGA-G9-6333 TCGA-G9-6336 TCGA-G9-6338 TCGA-G9-6339 TCGA-G9-6342 TCGA-G9-6343 
       65.95        65.98        65.98        65.98        55.76        18.21 
TCGA-G9-6347 TCGA-G9-6348 TCGA-G9-6351 TCGA-G9-6353 TCGA-G9-6354 TCGA-G9-6356 
       56.48        49.81        46.16        50.70        49.35        47.15 
TCGA-G9-6361 TCGA-G9-6362 TCGA-G9-6363 TCGA-G9-6364 TCGA-G9-6365 TCGA-G9-6366 
       46.52        47.44        45.30        39.39        44.81         3.32 
TCGA-G9-6367 TCGA-G9-6369 TCGA-G9-6370 TCGA-G9-6371 TCGA-G9-6373 TCGA-G9-6377 
       40.18        39.95        38.01        40.31        26.66        31.50 
TCGA-G9-6378 TCGA-G9-6379 TCGA-G9-6384 TCGA-G9-6385 TCGA-G9-6494 TCGA-G9-6496 
       37.97        45.80        25.15        27.29        58.22        56.75 
TCGA-G9-6498 TCGA-G9-6499 TCGA-G9-7510 TCGA-G9-7519 TCGA-G9-7521 TCGA-G9-7522 
       52.87        50.73        38.96        27.91        30.97        21.30 
TCGA-G9-7525 TCGA-H9-7775 TCGA-H9-A6BX TCGA-H9-A6BY TCGA-HC-7075 TCGA-HC-7077 
       32.68         6.08        18.74         3.68        19.76        65.98 
TCGA-HC-7078 TCGA-HC-7079 TCGA-HC-7080 TCGA-HC-7209 TCGA-HC-7211 TCGA-HC-7212 
        5.33         2.93         2.01         1.35         0.79        28.60 
TCGA-HC-7213 TCGA-HC-7230 TCGA-HC-7231 TCGA-HC-7233 TCGA-HC-7736 TCGA-HC-7737 
        1.97         1.68         2.37         1.71         0.72         2.10 
TCGA-HC-7740 TCGA-HC-7742 TCGA-HC-7744 TCGA-HC-7747 TCGA-HC-7748 TCGA-HC-7749 
        1.74         1.48         1.68         1.87        26.04         1.97 
TCGA-HC-7750 TCGA-HC-7752 TCGA-HC-7817 TCGA-HC-7818 TCGA-HC-7821 TCGA-HC-8216 
        1.12         3.22         1.05         1.48         1.84        22.42 
TCGA-HC-8265 TCGA-HC-A48F TCGA-HC-A4ZV TCGA-HC-A632 TCGA-HC-A6AL TCGA-HC-A6AO 
       15.88         1.51         0.76         2.01         2.20         5.49 
TCGA-HC-A6AP TCGA-HC-A6AQ TCGA-HC-A6AS TCGA-HC-A6HX TCGA-HC-A6HY TCGA-HI-7168 
        2.33         3.48         1.45         1.25         4.41        65.92 
TCGA-HI-7169 TCGA-HI-7170 TCGA-HI-7171 TCGA-J4-8198 TCGA-J4-8200 TCGA-J4-A67M 
       64.08        62.43        66.02        20.19        12.30        16.04 
TCGA-J4-A67N TCGA-J4-A67O TCGA-QU-A6IL TCGA-QU-A6IM TCGA-QU-A6IP 
       16.54        16.14         3.19        41.00        65.88 

  IDH1 MUTATED IDH1 WILD-TYPE 
         15.98           0.30 
  IDH1 MUTATED IDH1 WILD-TYPE 
         61.15          66.12 
  IDH1 MUTATED IDH1 WILD-TYPE 
         28.18          20.19 
[1] "16.0 - 61.1 (28.2)" "0.3 - 66.1 (20.2)" 
    TCGA-CH-5737     TCGA-CH-5738     TCGA-CH-5739     TCGA-CH-5740 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-CH-5741     TCGA-CH-5743     TCGA-CH-5744     TCGA-CH-5745 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-CH-5746     TCGA-CH-5748     TCGA-CH-5750     TCGA-CH-5751 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-CH-5752     TCGA-CH-5753     TCGA-CH-5754     TCGA-CH-5761 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-CH-5762     TCGA-CH-5763     TCGA-CH-5764     TCGA-CH-5765 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-CH-5766     TCGA-CH-5767     TCGA-CH-5768     TCGA-CH-5769 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-CH-5771     TCGA-CH-5772     TCGA-CH-5788     TCGA-CH-5789 
"IDH1 WILD-TYPE"   "IDH1 MUTATED" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-CH-5790     TCGA-CH-5791     TCGA-CH-5792     TCGA-CH-5794 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-EJ-5494     TCGA-EJ-5495     TCGA-EJ-5496     TCGA-EJ-5497 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-EJ-5498     TCGA-EJ-5499     TCGA-EJ-5501     TCGA-EJ-5502 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-EJ-5503     TCGA-EJ-5504     TCGA-EJ-5505     TCGA-EJ-5506 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-EJ-5507     TCGA-EJ-5508     TCGA-EJ-5509     TCGA-EJ-5510 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-EJ-5511     TCGA-EJ-5512     TCGA-EJ-5514     TCGA-EJ-5515 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-EJ-5516     TCGA-EJ-5517     TCGA-EJ-5518     TCGA-EJ-5519 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-EJ-5521     TCGA-EJ-5522     TCGA-EJ-5524     TCGA-EJ-5525 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-EJ-5526     TCGA-EJ-5527     TCGA-EJ-5530     TCGA-EJ-5531 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-EJ-5532     TCGA-EJ-5542     TCGA-EJ-7115     TCGA-EJ-7123 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-EJ-7125     TCGA-EJ-7314     TCGA-EJ-7315     TCGA-EJ-7317 
  "IDH1 MUTATED" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-EJ-7321     TCGA-EJ-7327     TCGA-EJ-7328     TCGA-EJ-7330 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-EJ-7331     TCGA-EJ-7781     TCGA-EJ-7782     TCGA-EJ-7783 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-EJ-7784     TCGA-EJ-7785     TCGA-EJ-7786     TCGA-EJ-7788 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-EJ-7789     TCGA-EJ-7791     TCGA-EJ-7792     TCGA-EJ-7793 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-EJ-7794     TCGA-EJ-7797     TCGA-EJ-8468     TCGA-EJ-8469 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-EJ-8470     TCGA-EJ-8472     TCGA-EJ-8474     TCGA-EJ-A46B 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-EJ-A46D     TCGA-EJ-A46E     TCGA-EJ-A46F     TCGA-EJ-A46G 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-EJ-A46H     TCGA-EJ-A46I     TCGA-FC-7708     TCGA-FC-7961 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-FC-A4JI     TCGA-FC-A5OB     TCGA-FC-A66V     TCGA-FC-A6HD 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-G9-6329     TCGA-G9-6332     TCGA-G9-6333     TCGA-G9-6336 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-G9-6338     TCGA-G9-6339     TCGA-G9-6342     TCGA-G9-6343 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-G9-6347     TCGA-G9-6348     TCGA-G9-6351     TCGA-G9-6353 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-G9-6354     TCGA-G9-6356     TCGA-G9-6361     TCGA-G9-6362 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-G9-6363     TCGA-G9-6364     TCGA-G9-6365     TCGA-G9-6366 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-G9-6367     TCGA-G9-6369     TCGA-G9-6370     TCGA-G9-6371 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-G9-6373     TCGA-G9-6377     TCGA-G9-6378     TCGA-G9-6379 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-G9-6384     TCGA-G9-6385     TCGA-G9-6494     TCGA-G9-6496 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-G9-6498     TCGA-G9-6499     TCGA-G9-7510     TCGA-G9-7519 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-G9-7521     TCGA-G9-7522     TCGA-G9-7523     TCGA-G9-7525 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE"   "IDH1 MUTATED" "IDH1 WILD-TYPE" 
    TCGA-H9-7775     TCGA-H9-A6BX     TCGA-H9-A6BY     TCGA-HC-7075 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-HC-7077     TCGA-HC-7078     TCGA-HC-7079     TCGA-HC-7080 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-HC-7209     TCGA-HC-7211     TCGA-HC-7212     TCGA-HC-7213 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-HC-7230     TCGA-HC-7231     TCGA-HC-7233     TCGA-HC-7736 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-HC-7737     TCGA-HC-7740     TCGA-HC-7742     TCGA-HC-7744 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-HC-7747     TCGA-HC-7748     TCGA-HC-7749     TCGA-HC-7750 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-HC-7752     TCGA-HC-7817     TCGA-HC-7818     TCGA-HC-7821 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-HC-8216     TCGA-HC-8265     TCGA-HC-A48F     TCGA-HC-A4ZV 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-HC-A632     TCGA-HC-A6AL     TCGA-HC-A6AO     TCGA-HC-A6AP 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-HC-A6AQ     TCGA-HC-A6AS     TCGA-HC-A6HX     TCGA-HC-A6HY 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-HI-7168     TCGA-HI-7169     TCGA-HI-7170     TCGA-HI-7171 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-J4-8198     TCGA-J4-8200     TCGA-J4-A67M     TCGA-J4-A67N 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-J4-A67O     TCGA-QU-A6IL     TCGA-QU-A6IM     TCGA-QU-A6IP 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-CH-5737     TCGA-CH-5738     TCGA-CH-5739     TCGA-CH-5740 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-CH-5741     TCGA-CH-5743     TCGA-CH-5744     TCGA-CH-5745 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-CH-5746     TCGA-CH-5748     TCGA-CH-5750     TCGA-CH-5751 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-CH-5752     TCGA-CH-5753     TCGA-CH-5754     TCGA-CH-5761 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-CH-5762     TCGA-CH-5763     TCGA-CH-5764     TCGA-CH-5765 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-CH-5766     TCGA-CH-5767     TCGA-CH-5768     TCGA-CH-5769 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-CH-5771     TCGA-CH-5772     TCGA-CH-5788     TCGA-CH-5789 
"IDH1 WILD-TYPE"   "IDH1 MUTATED" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-CH-5790     TCGA-CH-5791     TCGA-CH-5792     TCGA-CH-5794 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-EJ-5494     TCGA-EJ-5495     TCGA-EJ-5496     TCGA-EJ-5497 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-EJ-5498     TCGA-EJ-5499     TCGA-EJ-5501     TCGA-EJ-5502 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-EJ-5503     TCGA-EJ-5504     TCGA-EJ-5505     TCGA-EJ-5506 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-EJ-5507     TCGA-EJ-5508     TCGA-EJ-5509     TCGA-EJ-5510 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-EJ-5511     TCGA-EJ-5512     TCGA-EJ-5514     TCGA-EJ-5515 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-EJ-5516     TCGA-EJ-5517     TCGA-EJ-5518     TCGA-EJ-5519 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-EJ-5521     TCGA-EJ-5522     TCGA-EJ-5524     TCGA-EJ-5525 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-EJ-5526     TCGA-EJ-5527     TCGA-EJ-5530     TCGA-EJ-5531 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-EJ-5532     TCGA-EJ-5542     TCGA-EJ-7115     TCGA-EJ-7123 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-EJ-7125     TCGA-EJ-7314     TCGA-EJ-7315     TCGA-EJ-7317 
  "IDH1 MUTATED" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-EJ-7321     TCGA-EJ-7327     TCGA-EJ-7328     TCGA-EJ-7330 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-EJ-7331     TCGA-EJ-7781     TCGA-EJ-7782     TCGA-EJ-7783 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-EJ-7784     TCGA-EJ-7785     TCGA-EJ-7786     TCGA-EJ-7788 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-EJ-7789     TCGA-EJ-7791     TCGA-EJ-7792     TCGA-EJ-7793 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-EJ-7794     TCGA-EJ-7797     TCGA-EJ-8468     TCGA-EJ-8469 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-EJ-8470     TCGA-EJ-8472     TCGA-EJ-8474     TCGA-EJ-A46B 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-EJ-A46D     TCGA-EJ-A46E     TCGA-EJ-A46F     TCGA-EJ-A46G 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-EJ-A46H     TCGA-EJ-A46I     TCGA-FC-7708     TCGA-FC-7961 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-FC-A4JI     TCGA-FC-A5OB     TCGA-FC-A66V     TCGA-FC-A6HD 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-G9-6329     TCGA-G9-6332     TCGA-G9-6333     TCGA-G9-6336 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-G9-6338     TCGA-G9-6339     TCGA-G9-6342     TCGA-G9-6343 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-G9-6347     TCGA-G9-6348     TCGA-G9-6351     TCGA-G9-6353 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-G9-6354     TCGA-G9-6356     TCGA-G9-6361     TCGA-G9-6362 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-G9-6363     TCGA-G9-6364     TCGA-G9-6365     TCGA-G9-6366 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-G9-6367     TCGA-G9-6369     TCGA-G9-6370     TCGA-G9-6371 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-G9-6373     TCGA-G9-6377     TCGA-G9-6378     TCGA-G9-6379 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-G9-6384     TCGA-G9-6385     TCGA-G9-6494     TCGA-G9-6496 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-G9-6498     TCGA-G9-6499     TCGA-G9-7510     TCGA-G9-7519 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-G9-7521     TCGA-G9-7522     TCGA-G9-7523     TCGA-G9-7525 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE"   "IDH1 MUTATED" "IDH1 WILD-TYPE" 
    TCGA-H9-7775     TCGA-H9-A6BX     TCGA-H9-A6BY     TCGA-HC-7075 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-HC-7077     TCGA-HC-7078     TCGA-HC-7079     TCGA-HC-7080 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-HC-7209     TCGA-HC-7211     TCGA-HC-7212     TCGA-HC-7213 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-HC-7230     TCGA-HC-7231     TCGA-HC-7233     TCGA-HC-7736 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-HC-7737     TCGA-HC-7740     TCGA-HC-7742     TCGA-HC-7744 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-HC-7747     TCGA-HC-7748     TCGA-HC-7749     TCGA-HC-7750 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-HC-7752     TCGA-HC-7817     TCGA-HC-7818     TCGA-HC-7821 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-HC-8216     TCGA-HC-8265     TCGA-HC-A48F     TCGA-HC-A4ZV 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-HC-A632     TCGA-HC-A6AL     TCGA-HC-A6AO     TCGA-HC-A6AP 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-HC-A6AQ     TCGA-HC-A6AS     TCGA-HC-A6HX     TCGA-HC-A6HY 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-HI-7168     TCGA-HI-7169     TCGA-HI-7170     TCGA-HI-7171 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-J4-8198     TCGA-J4-8200     TCGA-J4-A67M     TCGA-J4-A67N 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-J4-A67O     TCGA-QU-A6IL     TCGA-QU-A6IM     TCGA-QU-A6IP 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-CH-5737     TCGA-CH-5738     TCGA-CH-5739     TCGA-CH-5740 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-CH-5741     TCGA-CH-5743     TCGA-CH-5744     TCGA-CH-5745 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-CH-5746     TCGA-CH-5748     TCGA-CH-5750     TCGA-CH-5751 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-CH-5752     TCGA-CH-5753     TCGA-CH-5754     TCGA-CH-5761 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-CH-5762     TCGA-CH-5763     TCGA-CH-5764     TCGA-CH-5765 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-CH-5766     TCGA-CH-5767     TCGA-CH-5768     TCGA-CH-5769 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-CH-5771     TCGA-CH-5772     TCGA-CH-5788     TCGA-CH-5789 
"IDH1 WILD-TYPE"   "IDH1 MUTATED" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-CH-5790     TCGA-CH-5791     TCGA-CH-5792     TCGA-CH-5794 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-EJ-5494     TCGA-EJ-5495     TCGA-EJ-5496     TCGA-EJ-5497 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-EJ-5498     TCGA-EJ-5499     TCGA-EJ-5501     TCGA-EJ-5502 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-EJ-5503     TCGA-EJ-5504     TCGA-EJ-5505     TCGA-EJ-5506 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-EJ-5507     TCGA-EJ-5508     TCGA-EJ-5509     TCGA-EJ-5510 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-EJ-5511     TCGA-EJ-5512     TCGA-EJ-5514     TCGA-EJ-5515 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-EJ-5516     TCGA-EJ-5517     TCGA-EJ-5518     TCGA-EJ-5519 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-EJ-5521     TCGA-EJ-5522     TCGA-EJ-5524     TCGA-EJ-5525 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-EJ-5526     TCGA-EJ-5527     TCGA-EJ-5530     TCGA-EJ-5531 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-EJ-5532     TCGA-EJ-5542     TCGA-EJ-7115     TCGA-EJ-7123 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-EJ-7125     TCGA-EJ-7314     TCGA-EJ-7315     TCGA-EJ-7317 
  "IDH1 MUTATED" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-EJ-7321     TCGA-EJ-7327     TCGA-EJ-7328     TCGA-EJ-7330 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-EJ-7331     TCGA-EJ-7781     TCGA-EJ-7782     TCGA-EJ-7783 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-EJ-7784     TCGA-EJ-7785     TCGA-EJ-7786     TCGA-EJ-7788 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-EJ-7789     TCGA-EJ-7791     TCGA-EJ-7792     TCGA-EJ-7793 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-EJ-7794     TCGA-EJ-7797     TCGA-EJ-8468     TCGA-EJ-8469 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-EJ-8470     TCGA-EJ-8472     TCGA-EJ-8474     TCGA-EJ-A46B 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-EJ-A46D     TCGA-EJ-A46E     TCGA-EJ-A46F     TCGA-EJ-A46G 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-EJ-A46H     TCGA-EJ-A46I     TCGA-FC-7708     TCGA-FC-7961 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-FC-A4JI     TCGA-FC-A5OB     TCGA-FC-A66V     TCGA-FC-A6HD 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-G9-6329     TCGA-G9-6332     TCGA-G9-6333     TCGA-G9-6336 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-G9-6338     TCGA-G9-6339     TCGA-G9-6342     TCGA-G9-6343 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-G9-6347     TCGA-G9-6348     TCGA-G9-6351     TCGA-G9-6353 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-G9-6354     TCGA-G9-6356     TCGA-G9-6361     TCGA-G9-6362 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-G9-6363     TCGA-G9-6364     TCGA-G9-6365     TCGA-G9-6366 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-G9-6367     TCGA-G9-6369     TCGA-G9-6370     TCGA-G9-6371 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-G9-6373     TCGA-G9-6377     TCGA-G9-6378     TCGA-G9-6379 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-G9-6384     TCGA-G9-6385     TCGA-G9-6494     TCGA-G9-6496 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-G9-6498     TCGA-G9-6499     TCGA-G9-7510     TCGA-G9-7519 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-G9-7521     TCGA-G9-7522     TCGA-G9-7523     TCGA-G9-7525 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE"   "IDH1 MUTATED" "IDH1 WILD-TYPE" 
    TCGA-H9-7775     TCGA-H9-A6BX     TCGA-H9-A6BY     TCGA-HC-7075 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-HC-7077     TCGA-HC-7078     TCGA-HC-7079     TCGA-HC-7080 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-HC-7209     TCGA-HC-7211     TCGA-HC-7212     TCGA-HC-7213 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-HC-7230     TCGA-HC-7231     TCGA-HC-7233     TCGA-HC-7736 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-HC-7737     TCGA-HC-7740     TCGA-HC-7742     TCGA-HC-7744 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-HC-7747     TCGA-HC-7748     TCGA-HC-7749     TCGA-HC-7750 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-HC-7752     TCGA-HC-7817     TCGA-HC-7818     TCGA-HC-7821 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-HC-8216     TCGA-HC-8265     TCGA-HC-A48F     TCGA-HC-A4ZV 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-HC-A632     TCGA-HC-A6AL     TCGA-HC-A6AO     TCGA-HC-A6AP 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-HC-A6AQ     TCGA-HC-A6AS     TCGA-HC-A6HX     TCGA-HC-A6HY 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-HI-7168     TCGA-HI-7169     TCGA-HI-7170     TCGA-HI-7171 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-J4-8198     TCGA-J4-8200     TCGA-J4-A67M     TCGA-J4-A67N 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-J4-A67O     TCGA-QU-A6IL     TCGA-QU-A6IM     TCGA-QU-A6IP 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
[1] "hr=" "1"  
D7V2, continuous
                vv
clus              T2  T3  T4
  IDH1 MUTATED     1   2   0
  IDH1 WILD-TYPE  87 103   5
D7V3, multiclass
    clus
vv   IDH1 MUTATED IDH1 WILD-TYPE
  T2            1             87
  T3            2            103
  T4            0              5
D7V4, binary
                cls
clus               0   1
  IDH1 MUTATED     3   0
  IDH1 WILD-TYPE 151  17
[1] "tbl2"
                cls
clus             [,1] [,2]
  IDH1 MUTATED      3    0
  IDH1 WILD-TYPE  151   17
   clus
vv  IDH1 MUTATED IDH1 WILD-TYPE
  0            3            151
  1            0             17
                vv
clus              R0  R1  RX
  IDH1 MUTATED     1   2   0
  IDH1 WILD-TYPE 148  34   5
D7V5, multiclass
    clus
vv   IDH1 MUTATED IDH1 WILD-TYPE
  R0            1            148
  R1            2             34
  RX            0              5
D7V6, continuous
D7V7, continuous
D7V8, continuous
D7V9, continuous
D7V10, continuous
D7V11, continuous
D7V12, continuous
D7V13, continuous
D7V14, continuous

Clustering(8) Variable = NKX3-1 MUTATION ANALYSIS
D8V1, survival
                  sevent
clus2                0   1
  NKX3-1 MUTATED     5   0
  NKX3-1 WILD-TYPE 194   1
  NKX3-1 MUTATED NKX3-1 WILD-TYPE 
               5              195 
  NKX3-1 MUTATED NKX3-1 WILD-TYPE 
               0                1 
$`NKX3-1 MUTATED`
TCGA-CH-5745 TCGA-CH-5767 TCGA-CH-5794 TCGA-EJ-5517 TCGA-EJ-5530 
        2.99        15.06        29.00        47.80        41.82 

$`NKX3-1 WILD-TYPE`
TCGA-CH-5737 TCGA-CH-5738 TCGA-CH-5739 TCGA-CH-5740 TCGA-CH-5741 TCGA-CH-5743 
        2.99         6.97        22.06         1.02        12.99        13.97 
TCGA-CH-5744 TCGA-CH-5746 TCGA-CH-5748 TCGA-CH-5750 TCGA-CH-5751 TCGA-CH-5752 
        1.97        24.03         1.02        13.02        35.01        31.00 
TCGA-CH-5753 TCGA-CH-5754 TCGA-CH-5761 TCGA-CH-5762 TCGA-CH-5763 TCGA-CH-5764 
        1.02         2.04         0.92        44.02        12.00         1.02 
TCGA-CH-5765 TCGA-CH-5766 TCGA-CH-5768 TCGA-CH-5769 TCGA-CH-5771 TCGA-CH-5772 
       23.01         1.02        24.03         2.04        13.02        15.98 
TCGA-CH-5788 TCGA-CH-5789 TCGA-CH-5790 TCGA-CH-5791 TCGA-CH-5792 TCGA-EJ-5494 
       26.99         9.99        32.02        33.01         2.99        27.16 
TCGA-EJ-5495 TCGA-EJ-5496 TCGA-EJ-5497 TCGA-EJ-5498 TCGA-EJ-5499 TCGA-EJ-5501 
       33.11        19.56        13.32        29.79        17.52        30.81 
TCGA-EJ-5502 TCGA-EJ-5503 TCGA-EJ-5504 TCGA-EJ-5505 TCGA-EJ-5506 TCGA-EJ-5507 
        8.05        23.54        28.93        30.31        27.19        23.90 
TCGA-EJ-5508 TCGA-EJ-5509 TCGA-EJ-5510 TCGA-EJ-5511 TCGA-EJ-5512 TCGA-EJ-5514 
       38.93        36.23        36.69        32.02        38.53        36.23 
TCGA-EJ-5515 TCGA-EJ-5516 TCGA-EJ-5518 TCGA-EJ-5519 TCGA-EJ-5521 TCGA-EJ-5522 
       40.77        46.55        52.27        43.92        51.88        48.07 
TCGA-EJ-5524 TCGA-EJ-5525 TCGA-EJ-5526 TCGA-EJ-5527 TCGA-EJ-5531 TCGA-EJ-5532 
       43.07        36.66        38.76        39.75        30.28        47.87 
TCGA-EJ-5542 TCGA-EJ-7115 TCGA-EJ-7123 TCGA-EJ-7125 TCGA-EJ-7314 TCGA-EJ-7315 
       29.06        27.02        49.02        61.15         9.70         9.50 
TCGA-EJ-7317 TCGA-EJ-7321 TCGA-EJ-7327 TCGA-EJ-7328 TCGA-EJ-7330 TCGA-EJ-7331 
        9.37         7.66         5.75         5.59         6.28         0.30 
TCGA-EJ-7781 TCGA-EJ-7782 TCGA-EJ-7783 TCGA-EJ-7784 TCGA-EJ-7785 TCGA-EJ-7786 
        5.56         2.10         4.31         5.49        20.55        14.53 
TCGA-EJ-7788 TCGA-EJ-7789 TCGA-EJ-7791 TCGA-EJ-7792 TCGA-EJ-7793 TCGA-EJ-7794 
        1.71        18.15        19.59        17.29         1.41        23.05 
TCGA-EJ-7797 TCGA-EJ-8468 TCGA-EJ-8469 TCGA-EJ-8470 TCGA-EJ-8472 TCGA-EJ-8474 
       12.13        64.47        63.98        26.99        66.12        10.32 
TCGA-EJ-A46B TCGA-EJ-A46D TCGA-EJ-A46E TCGA-EJ-A46F TCGA-EJ-A46G TCGA-EJ-A46H 
        5.33         4.24        17.49         9.83         3.06         7.53 
TCGA-EJ-A46I TCGA-FC-7708 TCGA-FC-7961 TCGA-FC-A4JI TCGA-FC-A5OB TCGA-FC-A66V 
       21.96        28.41        15.42        13.45         8.98        17.23 
TCGA-FC-A6HD TCGA-G9-6329 TCGA-G9-6332 TCGA-G9-6333 TCGA-G9-6336 TCGA-G9-6338 
        1.78        41.62        65.92        65.95        65.98        65.98 
TCGA-G9-6339 TCGA-G9-6342 TCGA-G9-6343 TCGA-G9-6347 TCGA-G9-6348 TCGA-G9-6351 
       65.98        55.76        18.21        56.48        49.81        46.16 
TCGA-G9-6353 TCGA-G9-6354 TCGA-G9-6356 TCGA-G9-6361 TCGA-G9-6362 TCGA-G9-6363 
       50.70        49.35        47.15        46.52        47.44        45.30 
TCGA-G9-6364 TCGA-G9-6365 TCGA-G9-6366 TCGA-G9-6367 TCGA-G9-6369 TCGA-G9-6370 
       39.39        44.81         3.32        40.18        39.95        38.01 
TCGA-G9-6371 TCGA-G9-6373 TCGA-G9-6377 TCGA-G9-6378 TCGA-G9-6379 TCGA-G9-6384 
       40.31        26.66        31.50        37.97        45.80        25.15 
TCGA-G9-6385 TCGA-G9-6494 TCGA-G9-6496 TCGA-G9-6498 TCGA-G9-6499 TCGA-G9-7510 
       27.29        58.22        56.75        52.87        50.73        38.96 
TCGA-G9-7519 TCGA-G9-7521 TCGA-G9-7522 TCGA-G9-7523 TCGA-G9-7525 TCGA-H9-7775 
       27.91        30.97        21.30        28.18        32.68         6.08 
TCGA-H9-A6BX TCGA-H9-A6BY TCGA-HC-7075 TCGA-HC-7077 TCGA-HC-7078 TCGA-HC-7079 
       18.74         3.68        19.76        65.98         5.33         2.93 
TCGA-HC-7080 TCGA-HC-7209 TCGA-HC-7211 TCGA-HC-7212 TCGA-HC-7213 TCGA-HC-7230 
        2.01         1.35         0.79        28.60         1.97         1.68 
TCGA-HC-7231 TCGA-HC-7233 TCGA-HC-7736 TCGA-HC-7737 TCGA-HC-7740 TCGA-HC-7742 
        2.37         1.71         0.72         2.10         1.74         1.48 
TCGA-HC-7744 TCGA-HC-7747 TCGA-HC-7748 TCGA-HC-7749 TCGA-HC-7750 TCGA-HC-7752 
        1.68         1.87        26.04         1.97         1.12         3.22 
TCGA-HC-7817 TCGA-HC-7818 TCGA-HC-7821 TCGA-HC-8216 TCGA-HC-8265 TCGA-HC-A48F 
        1.05         1.48         1.84        22.42        15.88         1.51 
TCGA-HC-A4ZV TCGA-HC-A632 TCGA-HC-A6AL TCGA-HC-A6AO TCGA-HC-A6AP TCGA-HC-A6AQ 
        0.76         2.01         2.20         5.49         2.33         3.48 
TCGA-HC-A6AS TCGA-HC-A6HX TCGA-HC-A6HY TCGA-HI-7168 TCGA-HI-7169 TCGA-HI-7170 
        1.45         1.25         4.41        65.92        64.08        62.43 
TCGA-HI-7171 TCGA-J4-8198 TCGA-J4-8200 TCGA-J4-A67M TCGA-J4-A67N TCGA-J4-A67O 
       66.02        20.19        12.30        16.04        16.54        16.14 
TCGA-QU-A6IL TCGA-QU-A6IM TCGA-QU-A6IP 
        3.19        41.00        65.88 

  NKX3-1 MUTATED NKX3-1 WILD-TYPE 
            2.99             0.30 
  NKX3-1 MUTATED NKX3-1 WILD-TYPE 
           47.80            66.12 
  NKX3-1 MUTATED NKX3-1 WILD-TYPE 
           29.00            20.19 
[1] "3.0 - 47.8 (29.0)" "0.3 - 66.1 (20.2)"
      TCGA-CH-5737       TCGA-CH-5738       TCGA-CH-5739       TCGA-CH-5740 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-CH-5741       TCGA-CH-5743       TCGA-CH-5744       TCGA-CH-5745 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE"   "NKX3-1 MUTATED" 
      TCGA-CH-5746       TCGA-CH-5748       TCGA-CH-5750       TCGA-CH-5751 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-CH-5752       TCGA-CH-5753       TCGA-CH-5754       TCGA-CH-5761 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-CH-5762       TCGA-CH-5763       TCGA-CH-5764       TCGA-CH-5765 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-CH-5766       TCGA-CH-5767       TCGA-CH-5768       TCGA-CH-5769 
"NKX3-1 WILD-TYPE"   "NKX3-1 MUTATED" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-CH-5771       TCGA-CH-5772       TCGA-CH-5788       TCGA-CH-5789 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-CH-5790       TCGA-CH-5791       TCGA-CH-5792       TCGA-CH-5794 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE"   "NKX3-1 MUTATED" 
      TCGA-EJ-5494       TCGA-EJ-5495       TCGA-EJ-5496       TCGA-EJ-5497 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-EJ-5498       TCGA-EJ-5499       TCGA-EJ-5501       TCGA-EJ-5502 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-EJ-5503       TCGA-EJ-5504       TCGA-EJ-5505       TCGA-EJ-5506 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-EJ-5507       TCGA-EJ-5508       TCGA-EJ-5509       TCGA-EJ-5510 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-EJ-5511       TCGA-EJ-5512       TCGA-EJ-5514       TCGA-EJ-5515 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-EJ-5516       TCGA-EJ-5517       TCGA-EJ-5518       TCGA-EJ-5519 
"NKX3-1 WILD-TYPE"   "NKX3-1 MUTATED" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-EJ-5521       TCGA-EJ-5522       TCGA-EJ-5524       TCGA-EJ-5525 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-EJ-5526       TCGA-EJ-5527       TCGA-EJ-5530       TCGA-EJ-5531 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE"   "NKX3-1 MUTATED" "NKX3-1 WILD-TYPE" 
      TCGA-EJ-5532       TCGA-EJ-5542       TCGA-EJ-7115       TCGA-EJ-7123 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-EJ-7125       TCGA-EJ-7314       TCGA-EJ-7315       TCGA-EJ-7317 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-EJ-7321       TCGA-EJ-7327       TCGA-EJ-7328       TCGA-EJ-7330 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-EJ-7331       TCGA-EJ-7781       TCGA-EJ-7782       TCGA-EJ-7783 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-EJ-7784       TCGA-EJ-7785       TCGA-EJ-7786       TCGA-EJ-7788 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-EJ-7789       TCGA-EJ-7791       TCGA-EJ-7792       TCGA-EJ-7793 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-EJ-7794       TCGA-EJ-7797       TCGA-EJ-8468       TCGA-EJ-8469 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-EJ-8470       TCGA-EJ-8472       TCGA-EJ-8474       TCGA-EJ-A46B 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-EJ-A46D       TCGA-EJ-A46E       TCGA-EJ-A46F       TCGA-EJ-A46G 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-EJ-A46H       TCGA-EJ-A46I       TCGA-FC-7708       TCGA-FC-7961 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-FC-A4JI       TCGA-FC-A5OB       TCGA-FC-A66V       TCGA-FC-A6HD 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-G9-6329       TCGA-G9-6332       TCGA-G9-6333       TCGA-G9-6336 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-G9-6338       TCGA-G9-6339       TCGA-G9-6342       TCGA-G9-6343 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-G9-6347       TCGA-G9-6348       TCGA-G9-6351       TCGA-G9-6353 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-G9-6354       TCGA-G9-6356       TCGA-G9-6361       TCGA-G9-6362 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-G9-6363       TCGA-G9-6364       TCGA-G9-6365       TCGA-G9-6366 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-G9-6367       TCGA-G9-6369       TCGA-G9-6370       TCGA-G9-6371 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-G9-6373       TCGA-G9-6377       TCGA-G9-6378       TCGA-G9-6379 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-G9-6384       TCGA-G9-6385       TCGA-G9-6494       TCGA-G9-6496 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-G9-6498       TCGA-G9-6499       TCGA-G9-7510       TCGA-G9-7519 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-G9-7521       TCGA-G9-7522       TCGA-G9-7523       TCGA-G9-7525 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-H9-7775       TCGA-H9-A6BX       TCGA-H9-A6BY       TCGA-HC-7075 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-HC-7077       TCGA-HC-7078       TCGA-HC-7079       TCGA-HC-7080 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-HC-7209       TCGA-HC-7211       TCGA-HC-7212       TCGA-HC-7213 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-HC-7230       TCGA-HC-7231       TCGA-HC-7233       TCGA-HC-7736 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-HC-7737       TCGA-HC-7740       TCGA-HC-7742       TCGA-HC-7744 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-HC-7747       TCGA-HC-7748       TCGA-HC-7749       TCGA-HC-7750 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-HC-7752       TCGA-HC-7817       TCGA-HC-7818       TCGA-HC-7821 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-HC-8216       TCGA-HC-8265       TCGA-HC-A48F       TCGA-HC-A4ZV 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-HC-A632       TCGA-HC-A6AL       TCGA-HC-A6AO       TCGA-HC-A6AP 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-HC-A6AQ       TCGA-HC-A6AS       TCGA-HC-A6HX       TCGA-HC-A6HY 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-HI-7168       TCGA-HI-7169       TCGA-HI-7170       TCGA-HI-7171 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-J4-8198       TCGA-J4-8200       TCGA-J4-A67M       TCGA-J4-A67N 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-J4-A67O       TCGA-QU-A6IL       TCGA-QU-A6IM       TCGA-QU-A6IP 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-CH-5737       TCGA-CH-5738       TCGA-CH-5739       TCGA-CH-5740 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-CH-5741       TCGA-CH-5743       TCGA-CH-5744       TCGA-CH-5745 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE"   "NKX3-1 MUTATED" 
      TCGA-CH-5746       TCGA-CH-5748       TCGA-CH-5750       TCGA-CH-5751 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-CH-5752       TCGA-CH-5753       TCGA-CH-5754       TCGA-CH-5761 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-CH-5762       TCGA-CH-5763       TCGA-CH-5764       TCGA-CH-5765 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-CH-5766       TCGA-CH-5767       TCGA-CH-5768       TCGA-CH-5769 
"NKX3-1 WILD-TYPE"   "NKX3-1 MUTATED" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-CH-5771       TCGA-CH-5772       TCGA-CH-5788       TCGA-CH-5789 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-CH-5790       TCGA-CH-5791       TCGA-CH-5792       TCGA-CH-5794 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE"   "NKX3-1 MUTATED" 
      TCGA-EJ-5494       TCGA-EJ-5495       TCGA-EJ-5496       TCGA-EJ-5497 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-EJ-5498       TCGA-EJ-5499       TCGA-EJ-5501       TCGA-EJ-5502 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-EJ-5503       TCGA-EJ-5504       TCGA-EJ-5505       TCGA-EJ-5506 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-EJ-5507       TCGA-EJ-5508       TCGA-EJ-5509       TCGA-EJ-5510 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-EJ-5511       TCGA-EJ-5512       TCGA-EJ-5514       TCGA-EJ-5515 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-EJ-5516       TCGA-EJ-5517       TCGA-EJ-5518       TCGA-EJ-5519 
"NKX3-1 WILD-TYPE"   "NKX3-1 MUTATED" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-EJ-5521       TCGA-EJ-5522       TCGA-EJ-5524       TCGA-EJ-5525 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-EJ-5526       TCGA-EJ-5527       TCGA-EJ-5530       TCGA-EJ-5531 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE"   "NKX3-1 MUTATED" "NKX3-1 WILD-TYPE" 
      TCGA-EJ-5532       TCGA-EJ-5542       TCGA-EJ-7115       TCGA-EJ-7123 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-EJ-7125       TCGA-EJ-7314       TCGA-EJ-7315       TCGA-EJ-7317 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-EJ-7321       TCGA-EJ-7327       TCGA-EJ-7328       TCGA-EJ-7330 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-EJ-7331       TCGA-EJ-7781       TCGA-EJ-7782       TCGA-EJ-7783 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-EJ-7784       TCGA-EJ-7785       TCGA-EJ-7786       TCGA-EJ-7788 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-EJ-7789       TCGA-EJ-7791       TCGA-EJ-7792       TCGA-EJ-7793 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-EJ-7794       TCGA-EJ-7797       TCGA-EJ-8468       TCGA-EJ-8469 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-EJ-8470       TCGA-EJ-8472       TCGA-EJ-8474       TCGA-EJ-A46B 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-EJ-A46D       TCGA-EJ-A46E       TCGA-EJ-A46F       TCGA-EJ-A46G 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-EJ-A46H       TCGA-EJ-A46I       TCGA-FC-7708       TCGA-FC-7961 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-FC-A4JI       TCGA-FC-A5OB       TCGA-FC-A66V       TCGA-FC-A6HD 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-G9-6329       TCGA-G9-6332       TCGA-G9-6333       TCGA-G9-6336 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-G9-6338       TCGA-G9-6339       TCGA-G9-6342       TCGA-G9-6343 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-G9-6347       TCGA-G9-6348       TCGA-G9-6351       TCGA-G9-6353 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-G9-6354       TCGA-G9-6356       TCGA-G9-6361       TCGA-G9-6362 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-G9-6363       TCGA-G9-6364       TCGA-G9-6365       TCGA-G9-6366 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-G9-6367       TCGA-G9-6369       TCGA-G9-6370       TCGA-G9-6371 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-G9-6373       TCGA-G9-6377       TCGA-G9-6378       TCGA-G9-6379 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-G9-6384       TCGA-G9-6385       TCGA-G9-6494       TCGA-G9-6496 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-G9-6498       TCGA-G9-6499       TCGA-G9-7510       TCGA-G9-7519 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-G9-7521       TCGA-G9-7522       TCGA-G9-7523       TCGA-G9-7525 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-H9-7775       TCGA-H9-A6BX       TCGA-H9-A6BY       TCGA-HC-7075 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-HC-7077       TCGA-HC-7078       TCGA-HC-7079       TCGA-HC-7080 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-HC-7209       TCGA-HC-7211       TCGA-HC-7212       TCGA-HC-7213 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-HC-7230       TCGA-HC-7231       TCGA-HC-7233       TCGA-HC-7736 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-HC-7737       TCGA-HC-7740       TCGA-HC-7742       TCGA-HC-7744 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-HC-7747       TCGA-HC-7748       TCGA-HC-7749       TCGA-HC-7750 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-HC-7752       TCGA-HC-7817       TCGA-HC-7818       TCGA-HC-7821 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-HC-8216       TCGA-HC-8265       TCGA-HC-A48F       TCGA-HC-A4ZV 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-HC-A632       TCGA-HC-A6AL       TCGA-HC-A6AO       TCGA-HC-A6AP 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-HC-A6AQ       TCGA-HC-A6AS       TCGA-HC-A6HX       TCGA-HC-A6HY 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-HI-7168       TCGA-HI-7169       TCGA-HI-7170       TCGA-HI-7171 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-J4-8198       TCGA-J4-8200       TCGA-J4-A67M       TCGA-J4-A67N 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-J4-A67O       TCGA-QU-A6IL       TCGA-QU-A6IM       TCGA-QU-A6IP 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-CH-5737       TCGA-CH-5738       TCGA-CH-5739       TCGA-CH-5740 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-CH-5741       TCGA-CH-5743       TCGA-CH-5744       TCGA-CH-5745 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE"   "NKX3-1 MUTATED" 
      TCGA-CH-5746       TCGA-CH-5748       TCGA-CH-5750       TCGA-CH-5751 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-CH-5752       TCGA-CH-5753       TCGA-CH-5754       TCGA-CH-5761 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-CH-5762       TCGA-CH-5763       TCGA-CH-5764       TCGA-CH-5765 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-CH-5766       TCGA-CH-5767       TCGA-CH-5768       TCGA-CH-5769 
"NKX3-1 WILD-TYPE"   "NKX3-1 MUTATED" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-CH-5771       TCGA-CH-5772       TCGA-CH-5788       TCGA-CH-5789 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-CH-5790       TCGA-CH-5791       TCGA-CH-5792       TCGA-CH-5794 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE"   "NKX3-1 MUTATED" 
      TCGA-EJ-5494       TCGA-EJ-5495       TCGA-EJ-5496       TCGA-EJ-5497 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-EJ-5498       TCGA-EJ-5499       TCGA-EJ-5501       TCGA-EJ-5502 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-EJ-5503       TCGA-EJ-5504       TCGA-EJ-5505       TCGA-EJ-5506 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-EJ-5507       TCGA-EJ-5508       TCGA-EJ-5509       TCGA-EJ-5510 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-EJ-5511       TCGA-EJ-5512       TCGA-EJ-5514       TCGA-EJ-5515 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-EJ-5516       TCGA-EJ-5517       TCGA-EJ-5518       TCGA-EJ-5519 
"NKX3-1 WILD-TYPE"   "NKX3-1 MUTATED" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-EJ-5521       TCGA-EJ-5522       TCGA-EJ-5524       TCGA-EJ-5525 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-EJ-5526       TCGA-EJ-5527       TCGA-EJ-5530       TCGA-EJ-5531 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE"   "NKX3-1 MUTATED" "NKX3-1 WILD-TYPE" 
      TCGA-EJ-5532       TCGA-EJ-5542       TCGA-EJ-7115       TCGA-EJ-7123 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-EJ-7125       TCGA-EJ-7314       TCGA-EJ-7315       TCGA-EJ-7317 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-EJ-7321       TCGA-EJ-7327       TCGA-EJ-7328       TCGA-EJ-7330 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-EJ-7331       TCGA-EJ-7781       TCGA-EJ-7782       TCGA-EJ-7783 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-EJ-7784       TCGA-EJ-7785       TCGA-EJ-7786       TCGA-EJ-7788 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-EJ-7789       TCGA-EJ-7791       TCGA-EJ-7792       TCGA-EJ-7793 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-EJ-7794       TCGA-EJ-7797       TCGA-EJ-8468       TCGA-EJ-8469 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-EJ-8470       TCGA-EJ-8472       TCGA-EJ-8474       TCGA-EJ-A46B 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-EJ-A46D       TCGA-EJ-A46E       TCGA-EJ-A46F       TCGA-EJ-A46G 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-EJ-A46H       TCGA-EJ-A46I       TCGA-FC-7708       TCGA-FC-7961 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-FC-A4JI       TCGA-FC-A5OB       TCGA-FC-A66V       TCGA-FC-A6HD 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-G9-6329       TCGA-G9-6332       TCGA-G9-6333       TCGA-G9-6336 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-G9-6338       TCGA-G9-6339       TCGA-G9-6342       TCGA-G9-6343 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-G9-6347       TCGA-G9-6348       TCGA-G9-6351       TCGA-G9-6353 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-G9-6354       TCGA-G9-6356       TCGA-G9-6361       TCGA-G9-6362 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-G9-6363       TCGA-G9-6364       TCGA-G9-6365       TCGA-G9-6366 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-G9-6367       TCGA-G9-6369       TCGA-G9-6370       TCGA-G9-6371 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-G9-6373       TCGA-G9-6377       TCGA-G9-6378       TCGA-G9-6379 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-G9-6384       TCGA-G9-6385       TCGA-G9-6494       TCGA-G9-6496 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-G9-6498       TCGA-G9-6499       TCGA-G9-7510       TCGA-G9-7519 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-G9-7521       TCGA-G9-7522       TCGA-G9-7523       TCGA-G9-7525 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-H9-7775       TCGA-H9-A6BX       TCGA-H9-A6BY       TCGA-HC-7075 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-HC-7077       TCGA-HC-7078       TCGA-HC-7079       TCGA-HC-7080 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-HC-7209       TCGA-HC-7211       TCGA-HC-7212       TCGA-HC-7213 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-HC-7230       TCGA-HC-7231       TCGA-HC-7233       TCGA-HC-7736 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-HC-7737       TCGA-HC-7740       TCGA-HC-7742       TCGA-HC-7744 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-HC-7747       TCGA-HC-7748       TCGA-HC-7749       TCGA-HC-7750 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-HC-7752       TCGA-HC-7817       TCGA-HC-7818       TCGA-HC-7821 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-HC-8216       TCGA-HC-8265       TCGA-HC-A48F       TCGA-HC-A4ZV 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-HC-A632       TCGA-HC-A6AL       TCGA-HC-A6AO       TCGA-HC-A6AP 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-HC-A6AQ       TCGA-HC-A6AS       TCGA-HC-A6HX       TCGA-HC-A6HY 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-HI-7168       TCGA-HI-7169       TCGA-HI-7170       TCGA-HI-7171 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-J4-8198       TCGA-J4-8200       TCGA-J4-A67M       TCGA-J4-A67N 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
      TCGA-J4-A67O       TCGA-QU-A6IL       TCGA-QU-A6IM       TCGA-QU-A6IP 
"NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" "NKX3-1 WILD-TYPE" 
[1] "hr=" "1"  
D8V2, continuous
                  vv
clus                T2  T3  T4
  NKX3-1 MUTATED     4   1   0
  NKX3-1 WILD-TYPE  84 104   5
D8V3, multiclass
    clus
vv   NKX3-1 MUTATED NKX3-1 WILD-TYPE
  T2              4               84
  T3              1              104
  T4              0                5
D8V4, binary
                  cls
clus                 0   1
  NKX3-1 MUTATED     5   0
  NKX3-1 WILD-TYPE 149  17
[1] "tbl2"
                  cls
clus               [,1] [,2]
  NKX3-1 MUTATED      5    0
  NKX3-1 WILD-TYPE  149   17
   clus
vv  NKX3-1 MUTATED NKX3-1 WILD-TYPE
  0              5              149
  1              0               17
                  vv
clus                R0  R1  RX
  NKX3-1 MUTATED     5   0   0
  NKX3-1 WILD-TYPE 144  36   5
D8V5, multiclass
    clus
vv   NKX3-1 MUTATED NKX3-1 WILD-TYPE
  R0              5              144
  R1              0               36
  RX              0                5
D8V6, continuous
D8V7, continuous
D8V8, continuous
D8V9, continuous
D8V10, continuous
D8V11, continuous
D8V12, continuous
D8V13, continuous
D8V14, continuous

Clustering(9) Variable = CDKN1B MUTATION ANALYSIS
D9V1, survival
                  sevent
clus2                0   1
  CDKN1B MUTATED     3   0
  CDKN1B WILD-TYPE 196   1
  CDKN1B MUTATED CDKN1B WILD-TYPE 
               3              197 
  CDKN1B MUTATED CDKN1B WILD-TYPE 
               0                1 
$`CDKN1B MUTATED`
TCGA-CH-5752 TCGA-EJ-5518 TCGA-EJ-7786 
       31.00        52.27        14.53 

$`CDKN1B WILD-TYPE`
TCGA-CH-5737 TCGA-CH-5738 TCGA-CH-5739 TCGA-CH-5740 TCGA-CH-5741 TCGA-CH-5743 
        2.99         6.97        22.06         1.02        12.99        13.97 
TCGA-CH-5744 TCGA-CH-5745 TCGA-CH-5746 TCGA-CH-5748 TCGA-CH-5750 TCGA-CH-5751 
        1.97         2.99        24.03         1.02        13.02        35.01 
TCGA-CH-5753 TCGA-CH-5754 TCGA-CH-5761 TCGA-CH-5762 TCGA-CH-5763 TCGA-CH-5764 
        1.02         2.04         0.92        44.02        12.00         1.02 
TCGA-CH-5765 TCGA-CH-5766 TCGA-CH-5767 TCGA-CH-5768 TCGA-CH-5769 TCGA-CH-5771 
       23.01         1.02        15.06        24.03         2.04        13.02 
TCGA-CH-5772 TCGA-CH-5788 TCGA-CH-5789 TCGA-CH-5790 TCGA-CH-5791 TCGA-CH-5792 
       15.98        26.99         9.99        32.02        33.01         2.99 
TCGA-CH-5794 TCGA-EJ-5494 TCGA-EJ-5495 TCGA-EJ-5496 TCGA-EJ-5497 TCGA-EJ-5498 
       29.00        27.16        33.11        19.56        13.32        29.79 
TCGA-EJ-5499 TCGA-EJ-5501 TCGA-EJ-5502 TCGA-EJ-5503 TCGA-EJ-5504 TCGA-EJ-5505 
       17.52        30.81         8.05        23.54        28.93        30.31 
TCGA-EJ-5506 TCGA-EJ-5507 TCGA-EJ-5508 TCGA-EJ-5509 TCGA-EJ-5510 TCGA-EJ-5511 
       27.19        23.90        38.93        36.23        36.69        32.02 
TCGA-EJ-5512 TCGA-EJ-5514 TCGA-EJ-5515 TCGA-EJ-5516 TCGA-EJ-5517 TCGA-EJ-5519 
       38.53        36.23        40.77        46.55        47.80        43.92 
TCGA-EJ-5521 TCGA-EJ-5522 TCGA-EJ-5524 TCGA-EJ-5525 TCGA-EJ-5526 TCGA-EJ-5527 
       51.88        48.07        43.07        36.66        38.76        39.75 
TCGA-EJ-5530 TCGA-EJ-5531 TCGA-EJ-5532 TCGA-EJ-5542 TCGA-EJ-7115 TCGA-EJ-7123 
       41.82        30.28        47.87        29.06        27.02        49.02 
TCGA-EJ-7125 TCGA-EJ-7314 TCGA-EJ-7315 TCGA-EJ-7317 TCGA-EJ-7321 TCGA-EJ-7327 
       61.15         9.70         9.50         9.37         7.66         5.75 
TCGA-EJ-7328 TCGA-EJ-7330 TCGA-EJ-7331 TCGA-EJ-7781 TCGA-EJ-7782 TCGA-EJ-7783 
        5.59         6.28         0.30         5.56         2.10         4.31 
TCGA-EJ-7784 TCGA-EJ-7785 TCGA-EJ-7788 TCGA-EJ-7789 TCGA-EJ-7791 TCGA-EJ-7792 
        5.49        20.55         1.71        18.15        19.59        17.29 
TCGA-EJ-7793 TCGA-EJ-7794 TCGA-EJ-7797 TCGA-EJ-8468 TCGA-EJ-8469 TCGA-EJ-8470 
        1.41        23.05        12.13        64.47        63.98        26.99 
TCGA-EJ-8472 TCGA-EJ-8474 TCGA-EJ-A46B TCGA-EJ-A46D TCGA-EJ-A46E TCGA-EJ-A46F 
       66.12        10.32         5.33         4.24        17.49         9.83 
TCGA-EJ-A46G TCGA-EJ-A46H TCGA-EJ-A46I TCGA-FC-7708 TCGA-FC-7961 TCGA-FC-A4JI 
        3.06         7.53        21.96        28.41        15.42        13.45 
TCGA-FC-A5OB TCGA-FC-A66V TCGA-FC-A6HD TCGA-G9-6329 TCGA-G9-6332 TCGA-G9-6333 
        8.98        17.23         1.78        41.62        65.92        65.95 
TCGA-G9-6336 TCGA-G9-6338 TCGA-G9-6339 TCGA-G9-6342 TCGA-G9-6343 TCGA-G9-6347 
       65.98        65.98        65.98        55.76        18.21        56.48 
TCGA-G9-6348 TCGA-G9-6351 TCGA-G9-6353 TCGA-G9-6354 TCGA-G9-6356 TCGA-G9-6361 
       49.81        46.16        50.70        49.35        47.15        46.52 
TCGA-G9-6362 TCGA-G9-6363 TCGA-G9-6364 TCGA-G9-6365 TCGA-G9-6366 TCGA-G9-6367 
       47.44        45.30        39.39        44.81         3.32        40.18 
TCGA-G9-6369 TCGA-G9-6370 TCGA-G9-6371 TCGA-G9-6373 TCGA-G9-6377 TCGA-G9-6378 
       39.95        38.01        40.31        26.66        31.50        37.97 
TCGA-G9-6379 TCGA-G9-6384 TCGA-G9-6385 TCGA-G9-6494 TCGA-G9-6496 TCGA-G9-6498 
       45.80        25.15        27.29        58.22        56.75        52.87 
TCGA-G9-6499 TCGA-G9-7510 TCGA-G9-7519 TCGA-G9-7521 TCGA-G9-7522 TCGA-G9-7523 
       50.73        38.96        27.91        30.97        21.30        28.18 
TCGA-G9-7525 TCGA-H9-7775 TCGA-H9-A6BX TCGA-H9-A6BY TCGA-HC-7075 TCGA-HC-7077 
       32.68         6.08        18.74         3.68        19.76        65.98 
TCGA-HC-7078 TCGA-HC-7079 TCGA-HC-7080 TCGA-HC-7209 TCGA-HC-7211 TCGA-HC-7212 
        5.33         2.93         2.01         1.35         0.79        28.60 
TCGA-HC-7213 TCGA-HC-7230 TCGA-HC-7231 TCGA-HC-7233 TCGA-HC-7736 TCGA-HC-7737 
        1.97         1.68         2.37         1.71         0.72         2.10 
TCGA-HC-7740 TCGA-HC-7742 TCGA-HC-7744 TCGA-HC-7747 TCGA-HC-7748 TCGA-HC-7749 
        1.74         1.48         1.68         1.87        26.04         1.97 
TCGA-HC-7750 TCGA-HC-7752 TCGA-HC-7817 TCGA-HC-7818 TCGA-HC-7821 TCGA-HC-8216 
        1.12         3.22         1.05         1.48         1.84        22.42 
TCGA-HC-8265 TCGA-HC-A48F TCGA-HC-A4ZV TCGA-HC-A632 TCGA-HC-A6AL TCGA-HC-A6AO 
       15.88         1.51         0.76         2.01         2.20         5.49 
TCGA-HC-A6AP TCGA-HC-A6AQ TCGA-HC-A6AS TCGA-HC-A6HX TCGA-HC-A6HY TCGA-HI-7168 
        2.33         3.48         1.45         1.25         4.41        65.92 
TCGA-HI-7169 TCGA-HI-7170 TCGA-HI-7171 TCGA-J4-8198 TCGA-J4-8200 TCGA-J4-A67M 
       64.08        62.43        66.02        20.19        12.30        16.04 
TCGA-J4-A67N TCGA-J4-A67O TCGA-QU-A6IL TCGA-QU-A6IM TCGA-QU-A6IP 
       16.54        16.14         3.19        41.00        65.88 

  CDKN1B MUTATED CDKN1B WILD-TYPE 
           14.53             0.30 
  CDKN1B MUTATED CDKN1B WILD-TYPE 
           52.27            66.12 
  CDKN1B MUTATED CDKN1B WILD-TYPE 
           31.00            20.19 
[1] "14.5 - 52.3 (31.0)" "0.3 - 66.1 (20.2)" 
      TCGA-CH-5737       TCGA-CH-5738       TCGA-CH-5739       TCGA-CH-5740 
"CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" 
      TCGA-CH-5741       TCGA-CH-5743       TCGA-CH-5744       TCGA-CH-5745 
"CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" 
      TCGA-CH-5746       TCGA-CH-5748       TCGA-CH-5750       TCGA-CH-5751 
"CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" 
      TCGA-CH-5752       TCGA-CH-5753       TCGA-CH-5754       TCGA-CH-5761 
  "CDKN1B MUTATED" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" 
      TCGA-CH-5762       TCGA-CH-5763       TCGA-CH-5764       TCGA-CH-5765 
"CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" 
      TCGA-CH-5766       TCGA-CH-5767       TCGA-CH-5768       TCGA-CH-5769 
"CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" 
      TCGA-CH-5771       TCGA-CH-5772       TCGA-CH-5788       TCGA-CH-5789 
"CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" 
      TCGA-CH-5790       TCGA-CH-5791       TCGA-CH-5792       TCGA-CH-5794 
"CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" 
      TCGA-EJ-5494       TCGA-EJ-5495       TCGA-EJ-5496       TCGA-EJ-5497 
"CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" 
      TCGA-EJ-5498       TCGA-EJ-5499       TCGA-EJ-5501       TCGA-EJ-5502 
"CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" 
      TCGA-EJ-5503       TCGA-EJ-5504       TCGA-EJ-5505       TCGA-EJ-5506 
"CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" 
      TCGA-EJ-5507       TCGA-EJ-5508       TCGA-EJ-5509       TCGA-EJ-5510 
"CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" 
      TCGA-EJ-5511       TCGA-EJ-5512       TCGA-EJ-5514       TCGA-EJ-5515 
"CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" 
      TCGA-EJ-5516       TCGA-EJ-5517       TCGA-EJ-5518       TCGA-EJ-5519 
"CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE"   "CDKN1B MUTATED" "CDKN1B WILD-TYPE" 
      TCGA-EJ-5521       TCGA-EJ-5522       TCGA-EJ-5524       TCGA-EJ-5525 
"CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" 
      TCGA-EJ-5526       TCGA-EJ-5527       TCGA-EJ-5530       TCGA-EJ-5531 
"CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" 
      TCGA-EJ-5532       TCGA-EJ-5542       TCGA-EJ-7115       TCGA-EJ-7123 
"CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" 
      TCGA-EJ-7125       TCGA-EJ-7314       TCGA-EJ-7315       TCGA-EJ-7317 
"CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" 
      TCGA-EJ-7321       TCGA-EJ-7327       TCGA-EJ-7328       TCGA-EJ-7330 
"CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" 
      TCGA-EJ-7331       TCGA-EJ-7781       TCGA-EJ-7782       TCGA-EJ-7783 
"CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" 
      TCGA-EJ-7784       TCGA-EJ-7785       TCGA-EJ-7786       TCGA-EJ-7788 
"CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE"   "CDKN1B MUTATED" "CDKN1B WILD-TYPE" 
      TCGA-EJ-7789       TCGA-EJ-7791       TCGA-EJ-7792       TCGA-EJ-7793 
"CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" 
      TCGA-EJ-7794       TCGA-EJ-7797       TCGA-EJ-8468       TCGA-EJ-8469 
"CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" 
      TCGA-EJ-8470       TCGA-EJ-8472       TCGA-EJ-8474       TCGA-EJ-A46B 
"CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" 
      TCGA-EJ-A46D       TCGA-EJ-A46E       TCGA-EJ-A46F       TCGA-EJ-A46G 
"CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" 
      TCGA-EJ-A46H       TCGA-EJ-A46I       TCGA-FC-7708       TCGA-FC-7961 
"CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" 
      TCGA-FC-A4JI       TCGA-FC-A5OB       TCGA-FC-A66V       TCGA-FC-A6HD 
"CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" 
      TCGA-G9-6329       TCGA-G9-6332       TCGA-G9-6333       TCGA-G9-6336 
"CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" 
      TCGA-G9-6338       TCGA-G9-6339       TCGA-G9-6342       TCGA-G9-6343 
"CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" 
      TCGA-G9-6347       TCGA-G9-6348       TCGA-G9-6351       TCGA-G9-6353 
"CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" 
      TCGA-G9-6354       TCGA-G9-6356       TCGA-G9-6361       TCGA-G9-6362 
"CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" 
      TCGA-G9-6363       TCGA-G9-6364       TCGA-G9-6365       TCGA-G9-6366 
"CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" 
      TCGA-G9-6367       TCGA-G9-6369       TCGA-G9-6370       TCGA-G9-6371 
"CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" 
      TCGA-G9-6373       TCGA-G9-6377       TCGA-G9-6378       TCGA-G9-6379 
"CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" 
      TCGA-G9-6384       TCGA-G9-6385       TCGA-G9-6494       TCGA-G9-6496 
"CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" 
      TCGA-G9-6498       TCGA-G9-6499       TCGA-G9-7510       TCGA-G9-7519 
"CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" 
      TCGA-G9-7521       TCGA-G9-7522       TCGA-G9-7523       TCGA-G9-7525 
"CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" 
      TCGA-H9-7775       TCGA-H9-A6BX       TCGA-H9-A6BY       TCGA-HC-7075 
"CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" 
      TCGA-HC-7077       TCGA-HC-7078       TCGA-HC-7079       TCGA-HC-7080 
"CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" 
      TCGA-HC-7209       TCGA-HC-7211       TCGA-HC-7212       TCGA-HC-7213 
"CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" 
      TCGA-HC-7230       TCGA-HC-7231       TCGA-HC-7233       TCGA-HC-7736 
"CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" 
      TCGA-HC-7737       TCGA-HC-7740       TCGA-HC-7742       TCGA-HC-7744 
"CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" 
      TCGA-HC-7747       TCGA-HC-7748       TCGA-HC-7749       TCGA-HC-7750 
"CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" 
      TCGA-HC-7752       TCGA-HC-7817       TCGA-HC-7818       TCGA-HC-7821 
"CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" 
      TCGA-HC-8216       TCGA-HC-8265       TCGA-HC-A48F       TCGA-HC-A4ZV 
"CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" 
      TCGA-HC-A632       TCGA-HC-A6AL       TCGA-HC-A6AO       TCGA-HC-A6AP 
"CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" 
      TCGA-HC-A6AQ       TCGA-HC-A6AS       TCGA-HC-A6HX       TCGA-HC-A6HY 
"CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" 
      TCGA-HI-7168       TCGA-HI-7169       TCGA-HI-7170       TCGA-HI-7171 
"CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" 
      TCGA-J4-8198       TCGA-J4-8200       TCGA-J4-A67M       TCGA-J4-A67N 
"CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" 
      TCGA-J4-A67O       TCGA-QU-A6IL       TCGA-QU-A6IM       TCGA-QU-A6IP 
"CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" 
      TCGA-CH-5737       TCGA-CH-5738       TCGA-CH-5739       TCGA-CH-5740 
"CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" 
      TCGA-CH-5741       TCGA-CH-5743       TCGA-CH-5744       TCGA-CH-5745 
"CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" 
      TCGA-CH-5746       TCGA-CH-5748       TCGA-CH-5750       TCGA-CH-5751 
"CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" 
      TCGA-CH-5752       TCGA-CH-5753       TCGA-CH-5754       TCGA-CH-5761 
  "CDKN1B MUTATED" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" 
      TCGA-CH-5762       TCGA-CH-5763       TCGA-CH-5764       TCGA-CH-5765 
"CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" 
      TCGA-CH-5766       TCGA-CH-5767       TCGA-CH-5768       TCGA-CH-5769 
"CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" 
      TCGA-CH-5771       TCGA-CH-5772       TCGA-CH-5788       TCGA-CH-5789 
"CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" 
      TCGA-CH-5790       TCGA-CH-5791       TCGA-CH-5792       TCGA-CH-5794 
"CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" 
      TCGA-EJ-5494       TCGA-EJ-5495       TCGA-EJ-5496       TCGA-EJ-5497 
"CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" 
      TCGA-EJ-5498       TCGA-EJ-5499       TCGA-EJ-5501       TCGA-EJ-5502 
"CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" 
      TCGA-EJ-5503       TCGA-EJ-5504       TCGA-EJ-5505       TCGA-EJ-5506 
"CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" 
      TCGA-EJ-5507       TCGA-EJ-5508       TCGA-EJ-5509       TCGA-EJ-5510 
"CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" 
      TCGA-EJ-5511       TCGA-EJ-5512       TCGA-EJ-5514       TCGA-EJ-5515 
"CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" 
      TCGA-EJ-5516       TCGA-EJ-5517       TCGA-EJ-5518       TCGA-EJ-5519 
"CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE"   "CDKN1B MUTATED" "CDKN1B WILD-TYPE" 
      TCGA-EJ-5521       TCGA-EJ-5522       TCGA-EJ-5524       TCGA-EJ-5525 
"CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" 
      TCGA-EJ-5526       TCGA-EJ-5527       TCGA-EJ-5530       TCGA-EJ-5531 
"CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" 
      TCGA-EJ-5532       TCGA-EJ-5542       TCGA-EJ-7115       TCGA-EJ-7123 
"CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" 
      TCGA-EJ-7125       TCGA-EJ-7314       TCGA-EJ-7315       TCGA-EJ-7317 
"CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" 
      TCGA-EJ-7321       TCGA-EJ-7327       TCGA-EJ-7328       TCGA-EJ-7330 
"CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" 
      TCGA-EJ-7331       TCGA-EJ-7781       TCGA-EJ-7782       TCGA-EJ-7783 
"CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" 
      TCGA-EJ-7784       TCGA-EJ-7785       TCGA-EJ-7786       TCGA-EJ-7788 
"CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE"   "CDKN1B MUTATED" "CDKN1B WILD-TYPE" 
      TCGA-EJ-7789       TCGA-EJ-7791       TCGA-EJ-7792       TCGA-EJ-7793 
"CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" 
      TCGA-EJ-7794       TCGA-EJ-7797       TCGA-EJ-8468       TCGA-EJ-8469 
"CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" 
      TCGA-EJ-8470       TCGA-EJ-8472       TCGA-EJ-8474       TCGA-EJ-A46B 
"CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" 
      TCGA-EJ-A46D       TCGA-EJ-A46E       TCGA-EJ-A46F       TCGA-EJ-A46G 
"CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" 
      TCGA-EJ-A46H       TCGA-EJ-A46I       TCGA-FC-7708       TCGA-FC-7961 
"CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" 
      TCGA-FC-A4JI       TCGA-FC-A5OB       TCGA-FC-A66V       TCGA-FC-A6HD 
"CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" 
      TCGA-G9-6329       TCGA-G9-6332       TCGA-G9-6333       TCGA-G9-6336 
"CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" 
      TCGA-G9-6338       TCGA-G9-6339       TCGA-G9-6342       TCGA-G9-6343 
"CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" 
      TCGA-G9-6347       TCGA-G9-6348       TCGA-G9-6351       TCGA-G9-6353 
"CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" 
      TCGA-G9-6354       TCGA-G9-6356       TCGA-G9-6361       TCGA-G9-6362 
"CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" 
      TCGA-G9-6363       TCGA-G9-6364       TCGA-G9-6365       TCGA-G9-6366 
"CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" 
      TCGA-G9-6367       TCGA-G9-6369       TCGA-G9-6370       TCGA-G9-6371 
"CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" 
      TCGA-G9-6373       TCGA-G9-6377       TCGA-G9-6378       TCGA-G9-6379 
"CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" 
      TCGA-G9-6384       TCGA-G9-6385       TCGA-G9-6494       TCGA-G9-6496 
"CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" 
      TCGA-G9-6498       TCGA-G9-6499       TCGA-G9-7510       TCGA-G9-7519 
"CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" 
      TCGA-G9-7521       TCGA-G9-7522       TCGA-G9-7523       TCGA-G9-7525 
"CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" 
      TCGA-H9-7775       TCGA-H9-A6BX       TCGA-H9-A6BY       TCGA-HC-7075 
"CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" 
      TCGA-HC-7077       TCGA-HC-7078       TCGA-HC-7079       TCGA-HC-7080 
"CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" 
      TCGA-HC-7209       TCGA-HC-7211       TCGA-HC-7212       TCGA-HC-7213 
"CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" 
      TCGA-HC-7230       TCGA-HC-7231       TCGA-HC-7233       TCGA-HC-7736 
"CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" 
      TCGA-HC-7737       TCGA-HC-7740       TCGA-HC-7742       TCGA-HC-7744 
"CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" 
      TCGA-HC-7747       TCGA-HC-7748       TCGA-HC-7749       TCGA-HC-7750 
"CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" 
      TCGA-HC-7752       TCGA-HC-7817       TCGA-HC-7818       TCGA-HC-7821 
"CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" 
      TCGA-HC-8216       TCGA-HC-8265       TCGA-HC-A48F       TCGA-HC-A4ZV 
"CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" 
      TCGA-HC-A632       TCGA-HC-A6AL       TCGA-HC-A6AO       TCGA-HC-A6AP 
"CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" 
      TCGA-HC-A6AQ       TCGA-HC-A6AS       TCGA-HC-A6HX       TCGA-HC-A6HY 
"CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" 
      TCGA-HI-7168       TCGA-HI-7169       TCGA-HI-7170       TCGA-HI-7171 
"CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" 
      TCGA-J4-8198       TCGA-J4-8200       TCGA-J4-A67M       TCGA-J4-A67N 
"CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" 
      TCGA-J4-A67O       TCGA-QU-A6IL       TCGA-QU-A6IM       TCGA-QU-A6IP 
"CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" 
      TCGA-CH-5737       TCGA-CH-5738       TCGA-CH-5739       TCGA-CH-5740 
"CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" 
      TCGA-CH-5741       TCGA-CH-5743       TCGA-CH-5744       TCGA-CH-5745 
"CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" 
      TCGA-CH-5746       TCGA-CH-5748       TCGA-CH-5750       TCGA-CH-5751 
"CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" 
      TCGA-CH-5752       TCGA-CH-5753       TCGA-CH-5754       TCGA-CH-5761 
  "CDKN1B MUTATED" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" 
      TCGA-CH-5762       TCGA-CH-5763       TCGA-CH-5764       TCGA-CH-5765 
"CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" 
      TCGA-CH-5766       TCGA-CH-5767       TCGA-CH-5768       TCGA-CH-5769 
"CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" 
      TCGA-CH-5771       TCGA-CH-5772       TCGA-CH-5788       TCGA-CH-5789 
"CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" 
      TCGA-CH-5790       TCGA-CH-5791       TCGA-CH-5792       TCGA-CH-5794 
"CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" 
      TCGA-EJ-5494       TCGA-EJ-5495       TCGA-EJ-5496       TCGA-EJ-5497 
"CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" 
      TCGA-EJ-5498       TCGA-EJ-5499       TCGA-EJ-5501       TCGA-EJ-5502 
"CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" 
      TCGA-EJ-5503       TCGA-EJ-5504       TCGA-EJ-5505       TCGA-EJ-5506 
"CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" 
      TCGA-EJ-5507       TCGA-EJ-5508       TCGA-EJ-5509       TCGA-EJ-5510 
"CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" 
      TCGA-EJ-5511       TCGA-EJ-5512       TCGA-EJ-5514       TCGA-EJ-5515 
"CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" 
      TCGA-EJ-5516       TCGA-EJ-5517       TCGA-EJ-5518       TCGA-EJ-5519 
"CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE"   "CDKN1B MUTATED" "CDKN1B WILD-TYPE" 
      TCGA-EJ-5521       TCGA-EJ-5522       TCGA-EJ-5524       TCGA-EJ-5525 
"CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" 
      TCGA-EJ-5526       TCGA-EJ-5527       TCGA-EJ-5530       TCGA-EJ-5531 
"CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" 
      TCGA-EJ-5532       TCGA-EJ-5542       TCGA-EJ-7115       TCGA-EJ-7123 
"CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" 
      TCGA-EJ-7125       TCGA-EJ-7314       TCGA-EJ-7315       TCGA-EJ-7317 
"CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" 
      TCGA-EJ-7321       TCGA-EJ-7327       TCGA-EJ-7328       TCGA-EJ-7330 
"CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" 
      TCGA-EJ-7331       TCGA-EJ-7781       TCGA-EJ-7782       TCGA-EJ-7783 
"CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" 
      TCGA-EJ-7784       TCGA-EJ-7785       TCGA-EJ-7786       TCGA-EJ-7788 
"CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE"   "CDKN1B MUTATED" "CDKN1B WILD-TYPE" 
      TCGA-EJ-7789       TCGA-EJ-7791       TCGA-EJ-7792       TCGA-EJ-7793 
"CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" 
      TCGA-EJ-7794       TCGA-EJ-7797       TCGA-EJ-8468       TCGA-EJ-8469 
"CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" 
      TCGA-EJ-8470       TCGA-EJ-8472       TCGA-EJ-8474       TCGA-EJ-A46B 
"CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" 
      TCGA-EJ-A46D       TCGA-EJ-A46E       TCGA-EJ-A46F       TCGA-EJ-A46G 
"CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" 
      TCGA-EJ-A46H       TCGA-EJ-A46I       TCGA-FC-7708       TCGA-FC-7961 
"CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" 
      TCGA-FC-A4JI       TCGA-FC-A5OB       TCGA-FC-A66V       TCGA-FC-A6HD 
"CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" 
      TCGA-G9-6329       TCGA-G9-6332       TCGA-G9-6333       TCGA-G9-6336 
"CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" 
      TCGA-G9-6338       TCGA-G9-6339       TCGA-G9-6342       TCGA-G9-6343 
"CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" 
      TCGA-G9-6347       TCGA-G9-6348       TCGA-G9-6351       TCGA-G9-6353 
"CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" 
      TCGA-G9-6354       TCGA-G9-6356       TCGA-G9-6361       TCGA-G9-6362 
"CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" 
      TCGA-G9-6363       TCGA-G9-6364       TCGA-G9-6365       TCGA-G9-6366 
"CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" 
      TCGA-G9-6367       TCGA-G9-6369       TCGA-G9-6370       TCGA-G9-6371 
"CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" 
      TCGA-G9-6373       TCGA-G9-6377       TCGA-G9-6378       TCGA-G9-6379 
"CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" 
      TCGA-G9-6384       TCGA-G9-6385       TCGA-G9-6494       TCGA-G9-6496 
"CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" 
      TCGA-G9-6498       TCGA-G9-6499       TCGA-G9-7510       TCGA-G9-7519 
"CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" 
      TCGA-G9-7521       TCGA-G9-7522       TCGA-G9-7523       TCGA-G9-7525 
"CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" 
      TCGA-H9-7775       TCGA-H9-A6BX       TCGA-H9-A6BY       TCGA-HC-7075 
"CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" 
      TCGA-HC-7077       TCGA-HC-7078       TCGA-HC-7079       TCGA-HC-7080 
"CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" 
      TCGA-HC-7209       TCGA-HC-7211       TCGA-HC-7212       TCGA-HC-7213 
"CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" 
      TCGA-HC-7230       TCGA-HC-7231       TCGA-HC-7233       TCGA-HC-7736 
"CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" 
      TCGA-HC-7737       TCGA-HC-7740       TCGA-HC-7742       TCGA-HC-7744 
"CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" 
      TCGA-HC-7747       TCGA-HC-7748       TCGA-HC-7749       TCGA-HC-7750 
"CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" 
      TCGA-HC-7752       TCGA-HC-7817       TCGA-HC-7818       TCGA-HC-7821 
"CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" 
      TCGA-HC-8216       TCGA-HC-8265       TCGA-HC-A48F       TCGA-HC-A4ZV 
"CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" 
      TCGA-HC-A632       TCGA-HC-A6AL       TCGA-HC-A6AO       TCGA-HC-A6AP 
"CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" 
      TCGA-HC-A6AQ       TCGA-HC-A6AS       TCGA-HC-A6HX       TCGA-HC-A6HY 
"CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" 
      TCGA-HI-7168       TCGA-HI-7169       TCGA-HI-7170       TCGA-HI-7171 
"CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" 
      TCGA-J4-8198       TCGA-J4-8200       TCGA-J4-A67M       TCGA-J4-A67N 
"CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" 
      TCGA-J4-A67O       TCGA-QU-A6IL       TCGA-QU-A6IM       TCGA-QU-A6IP 
"CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" "CDKN1B WILD-TYPE" 
[1] "hr=" "1"  
D9V2, continuous
                  vv
clus                T2  T3  T4
  CDKN1B MUTATED     1   1   1
  CDKN1B WILD-TYPE  87 104   4
D9V3, multiclass
    clus
vv   CDKN1B MUTATED CDKN1B WILD-TYPE
  T2              1               87
  T3              1              104
  T4              1                4
D9V4, binary
                  cls
clus                 0   1
  CDKN1B MUTATED     3   0
  CDKN1B WILD-TYPE 151  17
[1] "tbl2"
                  cls
clus               [,1] [,2]
  CDKN1B MUTATED      3    0
  CDKN1B WILD-TYPE  151   17
   clus
vv  CDKN1B MUTATED CDKN1B WILD-TYPE
  0              3              151
  1              0               17
                  vv
clus                R0  R1  RX
  CDKN1B MUTATED     2   1   0
  CDKN1B WILD-TYPE 147  35   5
D9V5, multiclass
    clus
vv   CDKN1B MUTATED CDKN1B WILD-TYPE
  R0              2              147
  R1              1               35
  RX              0                5
D9V6, continuous
D9V7, continuous
D9V8, continuous
D9V9, continuous
D9V10, continuous
D9V11, continuous
D9V12, continuous
D9V13, continuous
D9V14, continuous
> q(save="no")
