		Clinical Features	MRNA_CNMF		MRNA_CHIERARCHICAL		CN_CNMF		METHLYATION_CNMF		RPPA_CNMF		RPPA_CHIERARCHICAL		MRNASEQ_CNMF		MRNASEQ_CHIERARCHICAL		MIRSEQ_CNMF		MIRSEQ_CHIERARCHICAL		MIRSEQ_MATURE_CNMF		MIRSEQ_MATURE_CHIERARCHICAL	
	nCNV (%)	nWild-Type	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Chi-square test_P	Chi-square test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Chi-square test_P	Chi-square test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Chi-square test_P	Chi-square test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Chi-square test_P	Chi-square test_Q
amp_1q21.3	48 (30%)	114	1	1	0.58934	1	0.00011724	0.082	0.56241	1	0.49452	1	0.17967	1	0.49862	1	0.41101	1	0.080473	1	0.65406	1	0.030748	1	0.87031	1
amp_1q32.2	48 (30%)	114	0.78571	1	0.88086	1	0.0021245	1	0.55115	1	0.18454	1	0.05346	1	0.49862	1	0.20726	1	0.10974	1	0.38045	1	0.030748	1	0.60384	1
amp_5q22.3	20 (12%)	142	0.02196	1	0.60226	1	0.42811	1	0.25402	1	0.097175	1	0.29113	1	0.71969	1	0.28899	1	0.48523	1	0.60538	1	0.06206	1	0.54984	1
amp_6p21.1	53 (33%)	109	0.053863	1	0.034836	1	5.7361e-06	0.00406	0.09946	1	0.80236	1	0.16879	1	0.5724	1	0.36513	1	0.19346	1	0.2747	1	0.37879	1	0.86818	1
amp_8p11.23	52 (32%)	110	0.0033545	1	0.26852	1	9.5537e-07	0.000681	0.30549	1	0.35804	1	0.37587	1	0.12297	1	0.019697	1	0.056811	1	0.006574	1	0.67413	1	0.067443	1
amp_8p11.21	69 (43%)	93	0.011991	1	0.087382	1	1.0406e-08	7.44e-06	0.093496	1	0.37631	1	0.49954	1	0.22406	1	0.23901	1	0.17278	1	0.082915	1	0.42328	1	0.033296	1
amp_8q24.21	107 (66%)	55	0.017138	1	0.068914	1	4.677e-08	3.34e-05	0.04553	1	0.60531	1	0.59046	1	0.030907	1	0.042204	1	0.56639	1	0.14713	1	0.91963	1	0.09695	1
amp_10q22.2	11 (7%)	151	0.50188	1	0.8654	1	0.66204	1	1	1	1	1	0.69385	1	0.21848	1	0.19538	1	0.38713	1	0.28022	1	0.22776	1	0.86055	1
amp_11p15.5	44 (27%)	118	0.35323	1	0.57525	1	0.031557	1	0.84715	1	0.7217	1	0.7318	1	0.13515	1	0.71442	1	0.090226	1	0.47889	1	0.33182	1	0.005517	1
amp_11q13.3	27 (17%)	135	0.32617	1	0.19086	1	0.0035753	1	0.0028777	1	0.87178	1	0.84722	1	0.14981	1	0.21882	1	0.015119	1	0.12622	1	0.43796	1	0.79527	1
amp_12p13.33	41 (25%)	121	0.64862	1	1	1	0.0009828	0.677	0.49289	1	0.10955	1	0.055766	1	0.78332	1	0.94256	1	0.59317	1	0.82601	1	0.20442	1	0.68956	1
amp_12p12.1	40 (25%)	122	0.64416	1	1	1	8.9262e-05	0.0625	0.48549	1	0.051687	1	0.027297	1	0.69537	1	0.62357	1	0.68075	1	0.40509	1	0.02826	1	0.3021	1
amp_13q12.13	123 (76%)	39	0.40894	1	1	1	0.00014375	0.1	0.2996	1	0.31701	1	0.29861	1	0.0016008	1	0.016638	1	0.0041903	1	0.0021899	1	0.84017	1	0.40237	1
amp_13q12.2	122 (75%)	40	0.35643	1	0.83057	1	3.0918e-05	0.0217	0.22249	1	0.57752	1	0.42712	1	0.015987	1	0.070894	1	0.027658	1	0.010359	1	0.18291	1	0.49304	1
amp_13q22.1	117 (72%)	45	0.27417	1	0.61041	1	5.6789e-06	0.00403	0.084104	1	0.88245	1	0.13971	1	0.0054174	1	0.19965	1	0.0071233	1	0.0029705	1	0.15526	1	0.12373	1
amp_15q26.1	13 (8%)	149	0.10994	1	0.27596	1	0.1955	1	0.54874	1	0.15475	1	0.28658	1	0.091109	1	0.65487	1	0.95548	1	1	1	0.79043	1	0.26307	1
amp_16p11.2	45 (28%)	117	0.12971	1	0.72403	1	0.00019083	0.133	0.38865	1	0.32474	1	0.60079	1	0.15415	1	0.70384	1	0.10064	1	0.55748	1	0.20091	1	0.36054	1
amp_17q12	43 (27%)	119	0.0057957	1	0.19108	1	6.0275e-05	0.0423	0.50831	1	0.17817	1	0.89536	1	0.43154	1	0.52839	1	0.17128	1	0.83662	1	0.5721	1	0.64842	1
amp_17q24.1	37 (23%)	125	0.25268	1	0.91634	1	0.00024792	0.172	0.13052	1	0.5828	1	0.62978	1	0.63495	1	0.17933	1	0.59889	1	0.6531	1	0.71561	1	0.6047	1
amp_19p13.2	34 (21%)	128	0.022592	1	0.0081935	1	0.003365	1	0.72025	1	0.55585	1	0.34505	1	0.059563	1	1	1	0.59833	1	0.91403	1	0.97729	1	0.3918	1
amp_20q11.21	143 (88%)	19	0.0077699	1	0.37582	1	0.00041707	0.289	0.034161	1	0.19393	1	0.076606	1	0.058631	1	0.38734	1	0.028261	1	0.08468	1	0.18925	1	0.066276	1
amp_20q11.23	144 (89%)	18	0.0077699	1	0.37582	1	0.00086283	0.597	0.094019	1	0.19393	1	0.076606	1	0.040173	1	0.32806	1	0.050441	1	0.072182	1	0.47712	1	0.22266	1
amp_20q13.33	143 (88%)	19	0.036878	1	0.33623	1	0.014445	1	0.034161	1	0.25482	1	0.16864	1	0.17296	1	0.48537	1	0.13605	1	0.14341	1	0.33822	1	0.49054	1
amp_xp22.2	31 (19%)	131	0.051174	1	0.081176	1	0.64112	1	0.28526	1	0.93348	1	0.62137	1	0.69549	1	0.95028	1	0.81434	1	0.91389	1	0.41426	1	0.32469	1
amp_xq27.3	36 (22%)	126	0.35643	1	0.73901	1	0.020657	1	0.011133	1	0.60838	1	0.32434	1	0.020687	1	0.12934	1	0.45415	1	0.39591	1	0.29319	1	0.24612	1
del_1p36.11	72 (44%)	90	0.1057	1	0.01207	1	0.00048383	0.335	0.064352	1	0.71284	1	0.77647	1	0.71902	1	0.34938	1	0.48411	1	0.74153	1	0.91846	1	0.93387	1
del_1p33	50 (31%)	112	0.35643	1	0.0013206	0.907	1.0438e-05	0.00737	0.057809	1	0.75149	1	0.2989	1	0.68276	1	0.91323	1	0.42299	1	0.28557	1	0.8427	1	0.73963	1
del_1p13.2	52 (32%)	110	0.44553	1	0.015636	1	0.00011938	0.0833	0.34922	1	0.55478	1	0.73467	1	0.24214	1	0.1389	1	0.48661	1	0.15581	1	0.78525	1	0.69046	1
del_2p12	18 (11%)	144	0.35295	1	0.3077	1	0.0015783	1	0.88418	1	0.46043	1	0.096277	1	0.64996	1	0.32806	1	0.28233	1	0.46212	1	0.26698	1	0.76494	1
del_3p14.2	29 (18%)	133	0.80035	1	0.49089	1	0.77038	1	0.81823	1	0.22637	1	0.69444	1	0.35197	1	0.038117	1	0.83154	1	1	1	0.70416	1	0.66754	1
del_3q26.31	16 (10%)	146	1	1	0.38315	1	0.29807	1	1	1	0.72489	1	0.4826	1	0.79753	1	0.61808	1	0.065118	1	0.7378	1	0.068113	1	0.66516	1
del_4p13	59 (36%)	103	0.75015	1	0.12356	1	1.3807e-05	0.00973	0.024111	1	0.80802	1	0.32969	1	0.70706	1	1	1	0.97744	1	0.078791	1	0.40957	1	0.42139	1
del_4q22.1	72 (44%)	90	0.61123	1	0.057335	1	9.122e-06	0.00645	0.074946	1	0.70357	1	0.66472	1	0.39025	1	0.78616	1	0.98599	1	0.11488	1	0.76725	1	0.59807	1
del_4q35.1	71 (44%)	91	0.61689	1	0.30989	1	2.1676e-05	0.0153	0.041432	1	0.36005	1	0.57969	1	0.2458	1	0.50464	1	0.48647	1	0.042537	1	0.63768	1	0.57518	1
del_5q11.2	51 (31%)	111	0.071671	1	0.027359	1	0.019195	1	0.0035775	1	0.84536	1	0.23055	1	0.55004	1	0.45054	1	0.55407	1	0.053898	1	0.63975	1	0.41334	1
del_5q22.2	57 (35%)	105	0.17116	1	0.010319	1	0.059356	1	0.40082	1	0.55494	1	0.95258	1	1	1	0.81203	1	0.75402	1	0.24011	1	0.2134	1	0.49512	1
del_6p25.3	24 (15%)	138	1	1	0.82611	1	0.21223	1	0.032347	1	0.64775	1	0.98801	1	0.92665	1	0.93239	1	0.69002	1	0.52811	1	0.46779	1	0.36585	1
del_6q26	30 (19%)	132	0.15403	1	0.034086	1	0.13671	1	0.79935	1	0.087517	1	0.34296	1	0.26793	1	0.12517	1	0.077132	1	0.065787	1	0.096018	1	0.42443	1
del_7q31.1	4 (2%)	158	NA	NA	NA	NA	0.068614	1	NA	NA	1	1	0.45888	1	0.75871	1	1	1	0.74868	1	1	1	NA	NA	NA	NA
del_8p23.2	99 (61%)	63	0.096569	1	0.052809	1	5.5594e-06	0.00395	0.10764	1	1	1	0.58239	1	0.063252	1	0.17605	1	0.76035	1	1	1	0.28182	1	0.6242	1
del_8p11.21	24 (15%)	138	0.3177	1	0.69006	1	0.0034364	1	0.32414	1	0.12464	1	0.56022	1	0.17197	1	0.04769	1	0.07528	1	0.11358	1	0.37765	1	0.30143	1
del_10q21.1	37 (23%)	125	0.38669	1	0.22	1	0.05108	1	0.19059	1	0.051519	1	0.072357	1	0.42719	1	0.62965	1	0.81389	1	0.77122	1	0.821	1	0.78542	1
del_10q25.2	47 (29%)	115	0.75138	1	0.55542	1	0.064974	1	0.45313	1	0.45989	1	0.24741	1	0.68032	1	0.18799	1	0.60613	1	0.54502	1	0.68074	1	0.60312	1
del_11q22.3	38 (23%)	124	0.028793	1	0.046595	1	4.0018e-05	0.0281	0.087151	1	0.67355	1	0.065357	1	0.073953	1	0.10878	1	0.4428	1	0.63638	1	0.37641	1	0.43175	1
del_12p13.1	33 (20%)	129	1	1	1	1	0.24185	1	0.20014	1	0.51749	1	0.31093	1	0.5264	1	0.23946	1	0.28732	1	0.19724	1	0.73561	1	0.11312	1
del_12q22	24 (15%)	138	0.60778	1	0.60226	1	0.03578	1	0.61317	1	0.89795	1	0.71618	1	0.84254	1	0.74163	1	0.34489	1	0.22224	1	0.30467	1	0.2899	1
del_14q11.2	68 (42%)	94	0.45775	1	0.50027	1	0.029008	1	1	1	0.71284	1	0.86491	1	0.067701	1	0.48161	1	0.10074	1	0.19244	1	0.55615	1	0.89163	1
del_14q31.1	70 (43%)	92	0.45775	1	0.50027	1	0.031474	1	1	1	0.70838	1	0.23155	1	0.079848	1	0.71031	1	0.19145	1	0.27366	1	0.84225	1	0.9875	1
del_15q22.33	76 (47%)	86	0.57769	1	0.043931	1	0.0010532	0.725	0.58603	1	0.15094	1	0.28801	1	0.77798	1	0.25496	1	0.39431	1	0.87662	1	0.90931	1	0.6554	1
del_16p13.3	13 (8%)	149	0.88624	1	0.77815	1	0.0034345	1	0.026926	1	0.72489	1	0.66699	1	0.91343	1	0.70426	1	0.23706	1	0.2931	1	0.67546	1	0.64855	1
del_16q23.1	23 (14%)	139	0.15265	1	0.19086	1	0.02523	1	0.19733	1	0.5696	1	0.7112	1	0.57936	1	0.47948	1	0.61937	1	0.10184	1	0.51214	1	0.14604	1
del_17p11.2	110 (68%)	52	0.075478	1	0.33574	1	0.0063722	1	0.41591	1	0.79913	1	0.5266	1	0.8565	1	0.79594	1	0.90626	1	0.54384	1	0.63147	1	0.92222	1
del_18q21.2	143 (88%)	19	0.13231	1	0.12316	1	2.9647e-06	0.00211	0.15206	1	1	1	0.57316	1	0.932	1	0.44667	1	0.43297	1	0.2238	1	0.043998	1	0.82341	1
del_18q22.1	138 (85%)	24	0.067096	1	0.060474	1	2.8032e-06	0.002	0.035359	1	0.81905	1	0.48393	1	0.62686	1	1	1	0.80517	1	0.47186	1	0.0015168	1	0.41017	1
del_19p13.3	36 (22%)	126	0.2722	1	0.71828	1	0.012473	1	0.044064	1	1	1	0.90483	1	0.79024	1	0.39647	1	0.47797	1	0.0036802	1	0.74488	1	0.30495	1
del_20p12.1	60 (37%)	102	0.59262	1	0.7087	1	0.00096882	0.669	0.67727	1	0.5538	1	0.28001	1	0.70175	1	0.41947	1	0.04741	1	0.22593	1	0.96709	1	0.85239	1
del_20p12.1	60 (37%)	102	0.59262	1	0.7087	1	0.00096882	0.669	0.67727	1	0.5538	1	0.28001	1	0.70175	1	0.41947	1	0.04741	1	0.22593	1	0.96709	1	0.85239	1
del_21q11.2	71 (44%)	91	0.28595	1	0.067763	1	0.021162	1	0.94161	1	0.89625	1	0.42715	1	0.24568	1	0.56086	1	0.060819	1	0.4998	1	0.27411	1	0.55375	1
del_22q13.31	67 (41%)	95	0.89042	1	0.36296	1	0.0067129	1	0.66716	1	0.39648	1	0.4806	1	0.062914	1	0.05626	1	0.0071623	1	0.4081	1	0.22941	1	0.12713	1
del_xp22.33	33 (20%)	129	0.73999	1	0.77844	1	0.0013717	0.941	0.0022753	1	0.69458	1	0.80143	1	0.66364	1	0.63686	1	0.64257	1	0.8384	1	0.72867	1	0.37559	1
