Correlation between gene mutation status and molecular subtypes
Overview
Introduction

This pipeline computes the correlation between significantly recurrent gene mutations and molecular subtypes.

Summary

Testing the association between mutation status of 167 genes and 10 molecular subtypes across 278 patients, one significant finding detected with P value < 0.05 and Q value < 0.25.

  • BRAF mutation correlated to 'CN_CNMF'.

Results
Overview of the results

Table 1.  Get Full Table Overview of the association between mutation status of 167 genes and 10 molecular subtypes. Shown in the table are P values (Q values). Thresholded by P value < 0.05 and Q value < 0.25, one significant finding detected.

Clinical
Features 		CN
CNMF 		METHLYATION
CNMF 		RPPA
CNMF 		RPPA
CHIERARCHICAL 		MRNASEQ
CNMF 		MRNASEQ
CHIERARCHICAL 		MIRSEQ
CNMF 		MIRSEQ
CHIERARCHICAL 		MIRSEQ
MATURE
CNMF 		MIRSEQ
MATURE
CHIERARCHICAL
nMutated (%) nWild-Type Fisher's exact test Fisher's exact test Fisher's exact test Fisher's exact test Fisher's exact test Fisher's exact test Fisher's exact test Fisher's exact test Fisher's exact test Fisher's exact test
BRAF 140 (50%) 138 1.49e-05
(0.0248) 		0.0509
(1.00) 		0.499
(1.00) 		0.325
(1.00) 		0.00778
(1.00) 		0.0002
(0.333) 		0.164
(1.00) 		0.193
(1.00) 		0.143
(1.00) 		0.0551
(1.00)
C15ORF23 19 (7%) 259 0.812
(1.00) 		0.0498
(1.00) 		0.714
(1.00) 		0.916
(1.00) 		0.856
(1.00) 		0.402
(1.00) 		0.897
(1.00) 		0.861
(1.00) 		0.451
(1.00) 		0.823
(1.00)
ANKRD20A4 6 (2%) 272 0.482
(1.00) 		0.334
(1.00) 		0.827
(1.00) 		0.213
(1.00) 		0.0654
(1.00) 		0.375
(1.00) 		1
(1.00) 		1
(1.00) 		0.252
(1.00) 		0.812
(1.00)
CDKN2A 41 (15%) 237 0.293
(1.00) 		0.0807
(1.00) 		0.153
(1.00) 		0.946
(1.00) 		0.802
(1.00) 		0.679
(1.00) 		0.769
(1.00) 		0.701
(1.00) 		0.883
(1.00) 		0.697
(1.00)
NRAS 86 (31%) 192 0.00151
(1.00) 		0.0108
(1.00) 		0.425
(1.00) 		0.0168
(1.00) 		0.831
(1.00) 		0.476
(1.00) 		0.954
(1.00) 		0.68
(1.00) 		0.524
(1.00) 		0.35
(1.00)
OXA1L 8 (3%) 270 0.417
(1.00) 		0.2
(1.00) 		1
(1.00) 		0.289
(1.00) 		0.437
(1.00) 		0.521
(1.00) 		0.382
(1.00) 		0.543
(1.00) 		0.731
(1.00) 		0.245
(1.00)
TP53 47 (17%) 231 0.861
(1.00) 		0.0145
(1.00) 		0.248
(1.00) 		0.44
(1.00) 		0.215
(1.00) 		0.667
(1.00) 		1
(1.00) 		0.776
(1.00) 		0.766
(1.00) 		0.618
(1.00)
STK19 13 (5%) 265 0.735
(1.00) 		0.0408
(1.00) 		0.142
(1.00) 		0.501
(1.00) 		0.588
(1.00) 		0.621
(1.00) 		0.602
(1.00) 		0.561
(1.00) 		0.426
(1.00) 		0.56
(1.00)
PCDHAC2 156 (56%) 122 0.472
(1.00) 		0.0473
(1.00) 		0.441
(1.00) 		0.617
(1.00) 		0.718
(1.00) 		0.495
(1.00) 		0.851
(1.00) 		0.912
(1.00) 		0.435
(1.00) 		0.608
(1.00)
TMEM216 8 (3%) 270 0.184
(1.00) 		0.438
(1.00) 		0.0588
(1.00) 		0.789
(1.00) 		0.748
(1.00) 		0.817
(1.00) 		0.731
(1.00) 		0.467
(1.00) 		0.908
(1.00) 		0.71
(1.00)
PTEN 23 (8%) 255 0.456
(1.00) 		0.0804
(1.00) 		0.0182
(1.00) 		0.149
(1.00) 		0.168
(1.00) 		0.0132
(1.00) 		0.812
(1.00) 		0.398
(1.00) 		0.812
(1.00) 		0.293
(1.00)
MRPS31 19 (7%) 259 0.92
(1.00) 		0.0927
(1.00) 		0.964
(1.00) 		1
(1.00) 		0.159
(1.00) 		0.0146
(1.00) 		0.56
(1.00) 		0.631
(1.00) 		0.209
(1.00) 		0.436
(1.00)
PCDHGC5 141 (51%) 137 0.442
(1.00) 		0.193
(1.00) 		0.979
(1.00) 		0.963
(1.00) 		0.21
(1.00) 		0.758
(1.00) 		0.222
(1.00) 		0.475
(1.00) 		0.186
(1.00) 		0.262
(1.00)
BAGE 8 (3%) 270 0.213
(1.00) 		0.481
(1.00) 		0.708
(1.00) 		0.726
(1.00) 		0.397
(1.00) 		0.666
(1.00) 		0.731
(1.00) 		0.646
(1.00) 		0.604
(1.00) 		0.651
(1.00)
DSG1 45 (16%) 233 0.79
(1.00) 		1
(1.00) 		0.102
(1.00) 		0.52
(1.00) 		0.458
(1.00) 		0.814
(1.00) 		0.767
(1.00) 		0.556
(1.00) 		0.43
(1.00) 		0.52
(1.00)
PPP6C 20 (7%) 258 0.644
(1.00) 		0.32
(1.00) 		0.487
(1.00) 		0.202
(1.00) 		0.628
(1.00) 		0.11
(1.00) 		0.506
(1.00) 		0.174
(1.00) 		0.225
(1.00) 		0.613
(1.00)
RAC1 20 (7%) 258 0.0181
(1.00) 		0.538
(1.00) 		0.598
(1.00) 		0.427
(1.00) 		0.429
(1.00) 		0.233
(1.00) 		0.116
(1.00) 		0.324
(1.00) 		0.0551
(1.00) 		0.294
(1.00)
SERPINB3 42 (15%) 236 0.723
(1.00) 		0.933
(1.00) 		0.169
(1.00) 		0.188
(1.00) 		0.62
(1.00) 		0.177
(1.00) 		0.728
(1.00) 		0.641
(1.00) 		0.897
(1.00) 		0.965
(1.00)
TSHB 5 (2%) 273 0.708
(1.00) 		0.447
(1.00) 		0.45
(1.00) 		0.794
(1.00) 		0.268
(1.00) 		0.525
(1.00) 		1
(1.00) 		1
(1.00) 		0.864
(1.00) 		0.912
(1.00)
NDUFB9 8 (3%) 270 0.523
(1.00) 		0.097
(1.00) 		0.127
(1.00) 		0.63
(1.00) 		0.052
(1.00) 		0.0105
(1.00) 		0.273
(1.00) 		0.278
(1.00) 		0.201
(1.00) 		0.422
(1.00)
MS4A2 13 (5%) 265 0.541
(1.00) 		0.879
(1.00) 		1
(1.00) 		1
(1.00) 		0.822
(1.00) 		0.935
(1.00) 		0.719
(1.00) 		0.312
(1.00) 		1
(1.00) 		0.78
(1.00)
RPS27 24 (9%) 254 0.684
(1.00) 		0.818
(1.00) 		0.699
(1.00) 		0.752
(1.00) 		0.571
(1.00) 		1
(1.00) 		1
(1.00) 		0.685
(1.00) 		0.759
(1.00) 		0.622
(1.00)
PPIAL4G 15 (5%) 263 0.286
(1.00) 		0.897
(1.00) 		0.61
(1.00) 		0.558
(1.00) 		0.292
(1.00) 		0.456
(1.00) 		1
(1.00) 		0.548
(1.00) 		0.351
(1.00) 		0.558
(1.00)
LUZP2 27 (10%) 251 0.771
(1.00) 		0.236
(1.00) 		0.95
(1.00) 		0.421
(1.00) 		0.23
(1.00) 		0.808
(1.00) 		0.192
(1.00) 		0.457
(1.00) 		0.173
(1.00) 		0.611
(1.00)
FAM113B 28 (10%) 250 0.544
(1.00) 		0.189
(1.00) 		0.183
(1.00) 		0.464
(1.00) 		0.435
(1.00) 		0.0677
(1.00) 		0.151
(1.00) 		0.348
(1.00) 		0.0363
(1.00) 		0.191
(1.00)
IDH1 16 (6%) 262 0.0825
(1.00) 		0.166
(1.00) 		0.628
(1.00) 		0.827
(1.00) 		0.332
(1.00) 		0.192
(1.00) 		0.17
(1.00) 		0.171
(1.00) 		0.372
(1.00) 		0.162
(1.00)
OR51S1 30 (11%) 248 0.365
(1.00) 		0.877
(1.00) 		0.491
(1.00) 		0.065
(1.00) 		0.789
(1.00) 		0.73
(1.00) 		0.407
(1.00) 		0.436
(1.00) 		0.438
(1.00) 		0.0511
(1.00)
CYP4X1 21 (8%) 257 0.649
(1.00) 		0.584
(1.00) 		0.96
(1.00) 		0.225
(1.00) 		0.308
(1.00) 		0.557
(1.00) 		0.68
(1.00) 		0.719
(1.00) 		0.56
(1.00) 		0.682
(1.00)
ARMC4 54 (19%) 224 0.719
(1.00) 		0.711
(1.00) 		0.1
(1.00) 		0.575
(1.00) 		0.168
(1.00) 		0.755
(1.00) 		0.598
(1.00) 		0.619
(1.00) 		0.333
(1.00) 		0.161
(1.00)
TUBAL3 10 (4%) 268 0.365
(1.00) 		0.781
(1.00) 		0.481
(1.00) 		0.167
(1.00) 		0.72
(1.00) 		0.842
(1.00) 		0.711
(1.00) 		0.626
(1.00) 		0.786
(1.00) 		0.751
(1.00)
AOAH 27 (10%) 251 0.959
(1.00) 		0.606
(1.00) 		0.417
(1.00) 		0.659
(1.00) 		0.28
(1.00) 		0.195
(1.00) 		0.827
(1.00) 		0.204
(1.00) 		0.391
(1.00) 		0.411
(1.00)
NMNAT3 11 (4%) 267 0.666
(1.00) 		0.113
(1.00) 		0.8
(1.00) 		0.656
(1.00) 		0.266
(1.00) 		1
(1.00) 		0.858
(1.00) 		0.192
(1.00) 		0.859
(1.00) 		0.178
(1.00)
THEMIS 34 (12%) 244 0.466
(1.00) 		0.118
(1.00) 		0.525
(1.00) 		0.947
(1.00) 		0.838
(1.00) 		0.457
(1.00) 		0.214
(1.00) 		0.417
(1.00) 		0.688
(1.00) 		0.186
(1.00)
CYP4Z1 27 (10%) 251 0.844
(1.00) 		0.172
(1.00) 		0.0304
(1.00) 		0.239
(1.00) 		0.594
(1.00) 		0.169
(1.00) 		0.635
(1.00) 		0.441
(1.00) 		0.725
(1.00) 		0.67
(1.00)
CTAGE6P 7 (3%) 271 0.797
(1.00) 		1
(1.00) 		0.0142
(1.00) 		0.33
(1.00) 		0.299
(1.00) 		0.79
(1.00) 		0.669
(1.00) 		0.271
(1.00) 		1
(1.00) 		0.366
(1.00)
TC2N 20 (7%) 258 0.676
(1.00) 		0.397
(1.00) 		0.612
(1.00) 		0.51
(1.00) 		0.634
(1.00) 		0.913
(1.00) 		0.479
(1.00) 		0.883
(1.00) 		0.439
(1.00) 		0.394
(1.00)
MPP7 30 (11%) 248 0.762
(1.00) 		0.318
(1.00) 		0.395
(1.00) 		0.485
(1.00) 		0.291
(1.00) 		0.332
(1.00) 		0.657
(1.00) 		0.804
(1.00) 		0.899
(1.00) 		0.49
(1.00)
CAPZA3 26 (9%) 252 0.173
(1.00) 		0.701
(1.00) 		0.749
(1.00) 		0.551
(1.00) 		0.804
(1.00) 		1
(1.00) 		1
(1.00) 		0.519
(1.00) 		0.738
(1.00) 		0.713
(1.00)
C1QTNF9 16 (6%) 262 0.452
(1.00) 		0.557
(1.00) 		0.649
(1.00) 		0.768
(1.00) 		1
(1.00) 		0.632
(1.00) 		0.182
(1.00) 		0.117
(1.00) 		0.454
(1.00) 		0.447
(1.00)
ZNF99 38 (14%) 240 0.197
(1.00) 		0.653
(1.00) 		0.795
(1.00) 		0.297
(1.00) 		0.331
(1.00) 		0.0761
(1.00) 		0.526
(1.00) 		0.514
(1.00) 		0.617
(1.00) 		0.0453
(1.00)
GPR141 16 (6%) 262 0.197
(1.00) 		0.151
(1.00) 		0.0325
(1.00) 		0.0599
(1.00) 		0.699
(1.00) 		0.314
(1.00) 		0.107
(1.00) 		0.541
(1.00) 		0.0644
(1.00) 		0.804
(1.00)
ITGA4 36 (13%) 242 0.381
(1.00) 		0.0804
(1.00) 		0.64
(1.00) 		0.784
(1.00) 		0.275
(1.00) 		0.607
(1.00) 		0.564
(1.00) 		0.267
(1.00) 		0.433
(1.00) 		0.658
(1.00)
PROL1 23 (8%) 255 0.714
(1.00) 		0.371
(1.00) 		0.466
(1.00) 		0.464
(1.00) 		0.863
(1.00) 		0.635
(1.00) 		0.168
(1.00) 		0.25
(1.00) 		0.405
(1.00) 		0.655
(1.00)
EMG1 9 (3%) 269 0.966
(1.00) 		0.835
(1.00) 		0.531
(1.00) 		0.16
(1.00) 		0.441
(1.00) 		0.264
(1.00) 		0.388
(1.00) 		1
(1.00) 		0.837
(1.00) 		0.311
(1.00)
TMPRSS11B 22 (8%) 256 0.672
(1.00) 		0.26
(1.00) 		0.0721
(1.00) 		0.822
(1.00) 		0.683
(1.00) 		0.586
(1.00) 		0.263
(1.00) 		0.0956
(1.00) 		0.503
(1.00) 		0.143
(1.00)
RQCD1 9 (3%) 269 0.0648
(1.00) 		0.18
(1.00) 		0.0863
(1.00) 		0.63
(1.00) 		0.585
(1.00) 		0.372
(1.00) 		0.628
(1.00) 		0.89
(1.00) 		0.527
(1.00) 		0.921
(1.00)
OR4E2 24 (9%) 254 0.257
(1.00) 		0.757
(1.00) 		0.844
(1.00) 		0.529
(1.00) 		0.256
(1.00) 		0.454
(1.00) 		0.754
(1.00) 		0.921
(1.00) 		0.72
(1.00) 		0.581
(1.00)
TCHHL1 39 (14%) 239 0.647
(1.00) 		0.345
(1.00) 		0.039
(1.00) 		0.53
(1.00) 		0.263
(1.00) 		0.444
(1.00) 		0.661
(1.00) 		0.414
(1.00) 		0.863
(1.00) 		0.76
(1.00)
LOC649330 28 (10%) 250 0.0289
(1.00) 		0.484
(1.00) 		0.763
(1.00) 		0.485
(1.00) 		0.199
(1.00) 		0.398
(1.00) 		0.945
(1.00) 		0.437
(1.00) 		0.94
(1.00) 		0.617
(1.00)
PCSK1 26 (9%) 252 0.789
(1.00) 		0.418
(1.00) 		0.166
(1.00) 		0.575
(1.00) 		0.948
(1.00) 		0.723
(1.00) 		1
(1.00) 		0.308
(1.00) 		0.966
(1.00) 		0.362
(1.00)
ELF5 9 (3%) 269 0.79
(1.00) 		0.532
(1.00) 		0.708
(1.00) 		1
(1.00) 		0.441
(1.00) 		0.372
(1.00) 		0.257
(1.00) 		0.0858
(1.00) 		0.153
(1.00) 		0.121
(1.00)
OGDHL 33 (12%) 245 0.599
(1.00) 		0.0948
(1.00) 		0.64
(1.00) 		0.427
(1.00) 		0.481
(1.00) 		0.455
(1.00) 		0.0579
(1.00) 		1
(1.00) 		0.0667
(1.00) 		0.317
(1.00)
PCDP1 18 (6%) 260 0.224
(1.00) 		0.113
(1.00) 		0.56
(1.00) 		0.153
(1.00) 		0.367
(1.00) 		0.814
(1.00) 		0.469
(1.00) 		0.215
(1.00) 		0.599
(1.00) 		0.113
(1.00)
FUT9 29 (10%) 249 0.804
(1.00) 		0.0313
(1.00) 		0.361
(1.00) 		0.375
(1.00) 		0.169
(1.00) 		0.0515
(1.00) 		0.227
(1.00) 		0.56
(1.00) 		0.39
(1.00) 		0.0199
(1.00)
GCOM1 24 (9%) 254 0.96
(1.00) 		0.86
(1.00) 		0.525
(1.00) 		0.593
(1.00) 		0.0268
(1.00) 		0.698
(1.00) 		0.43
(1.00) 		0.685
(1.00) 		0.39
(1.00) 		0.284
(1.00)
SIRPB1 22 (8%) 256 0.809
(1.00) 		0.886
(1.00) 		0.184
(1.00) 		0.596
(1.00) 		0.15
(1.00) 		0.743
(1.00) 		0.363
(1.00) 		0.424
(1.00) 		0.718
(1.00) 		0.0924
(1.00)
CHGB 29 (10%) 249 0.613
(1.00) 		0.18
(1.00) 		0.0653
(1.00) 		0.0018
(1.00) 		0.139
(1.00) 		0.457
(1.00) 		0.572
(1.00) 		0.948
(1.00) 		0.397
(1.00) 		0.974
(1.00)
PENK 23 (8%) 255 0.444
(1.00) 		0.0637
(1.00) 		0.345
(1.00) 		0.822
(1.00) 		0.0591
(1.00) 		0.6
(1.00) 		0.605
(1.00) 		0.685
(1.00) 		0.299
(1.00) 		0.471
(1.00)
C8ORF34 29 (10%) 249 0.752
(1.00) 		0.613
(1.00) 		0.358
(1.00) 		0.511
(1.00) 		0.0728
(1.00) 		0.256
(1.00) 		0.0915
(1.00) 		0.204
(1.00) 		0.063
(1.00) 		0.148
(1.00)
GALNTL5 15 (5%) 263 0.454
(1.00) 		0.288
(1.00) 		0.364
(1.00) 		0.755
(1.00) 		0.686
(1.00) 		0.456
(1.00) 		0.532
(1.00) 		0.923
(1.00) 		0.287
(1.00) 		0.658
(1.00)
TCEB3C 26 (9%) 252 0.0586
(1.00) 		0.626
(1.00) 		0.737
(1.00) 		0.53
(1.00) 		0.607
(1.00) 		0.448
(1.00) 		0.927
(1.00) 		0.153
(1.00) 		0.823
(1.00) 		0.216
(1.00)
LRRC4C 41 (15%) 237 0.531
(1.00) 		0.11
(1.00) 		0.386
(1.00) 		0.575
(1.00) 		0.449
(1.00) 		0.111
(1.00) 		0.571
(1.00) 		0.322
(1.00) 		0.953
(1.00) 		0.103
(1.00)
RCAN2 15 (5%) 263 0.685
(1.00) 		0.243
(1.00) 		0.61
(1.00) 		0.182
(1.00) 		0.685
(1.00) 		0.429
(1.00) 		0.443
(1.00) 		0.443
(1.00) 		0.372
(1.00) 		0.0728
(1.00)
SYCP1 28 (10%) 250 0.612
(1.00) 		0.0953
(1.00) 		0.14
(1.00) 		0.651
(1.00) 		0.0895
(1.00) 		0.523
(1.00) 		0.76
(1.00) 		0.351
(1.00) 		0.629
(1.00) 		0.557
(1.00)
CYP3A7 25 (9%) 253 0.821
(1.00) 		0.349
(1.00) 		0.53
(1.00) 		0.745
(1.00) 		0.225
(1.00) 		0.482
(1.00) 		0.308
(1.00) 		0.136
(1.00) 		0.295
(1.00) 		0.316
(1.00)
APCS 13 (5%) 265 0.709
(1.00) 		0.161
(1.00) 		0.887
(1.00) 		0.725
(1.00) 		0.172
(1.00) 		0.401
(1.00) 		0.546
(1.00) 		0.481
(1.00) 		0.517
(1.00) 		0.384
(1.00)
STXBP5L 55 (20%) 223 0.895
(1.00) 		0.471
(1.00) 		0.49
(1.00) 		0.176
(1.00) 		0.0862
(1.00) 		0.0321
(1.00) 		0.658
(1.00) 		0.576
(1.00) 		0.785
(1.00) 		0.134
(1.00)
SCN5A 69 (25%) 209 0.739
(1.00) 		0.296
(1.00) 		0.0826
(1.00) 		0.169
(1.00) 		0.776
(1.00) 		0.759
(1.00) 		0.75
(1.00) 		0.89
(1.00) 		0.809
(1.00) 		0.898
(1.00)
LCE1B 14 (5%) 264 0.108
(1.00) 		0.403
(1.00) 		0.853
(1.00) 		0.618
(1.00) 		0.566
(1.00) 		0.395
(1.00) 		0.77
(1.00) 		0.909
(1.00) 		0.677
(1.00) 		0.971
(1.00)
TPTE2 33 (12%) 245 0.948
(1.00) 		0.774
(1.00) 		0.247
(1.00) 		0.639
(1.00) 		0.352
(1.00) 		0.697
(1.00) 		0.245
(1.00) 		0.58
(1.00) 		0.086
(1.00) 		0.24
(1.00)
OR2W1 20 (7%) 258 0.588
(1.00) 		0.552
(1.00) 		0.681
(1.00) 		0.279
(1.00) 		0.429
(1.00) 		0.784
(1.00) 		0.487
(1.00) 		0.709
(1.00) 		0.719
(1.00) 		0.954
(1.00)
LRTM1 26 (9%) 252 0.873
(1.00) 		0.315
(1.00) 		0.739
(1.00) 		0.846
(1.00) 		1
(1.00) 		0.969
(1.00) 		0.453
(1.00) 		0.442
(1.00) 		0.759
(1.00) 		0.74
(1.00)
SLC10A2 24 (9%) 254 0.888
(1.00) 		0.0633
(1.00) 		0.112
(1.00) 		0.402
(1.00) 		0.256
(1.00) 		0.239
(1.00) 		0.566
(1.00) 		0.0837
(1.00) 		0.507
(1.00) 		0.155
(1.00)
NF1 38 (14%) 240 0.414
(1.00) 		0.407
(1.00) 		0.536
(1.00) 		0.291
(1.00) 		0.649
(1.00) 		0.245
(1.00) 		0.217
(1.00) 		0.676
(1.00) 		0.13
(1.00) 		0.458
(1.00)
STK31 36 (13%) 242 0.3
(1.00) 		0.0984
(1.00) 		0.365
(1.00) 		0.637
(1.00) 		0.00378
(1.00) 		0.00816
(1.00) 		0.529
(1.00) 		0.947
(1.00) 		0.719
(1.00) 		0.0591
(1.00)
ANGPT1 30 (11%) 248 0.778
(1.00) 		0.0794
(1.00) 		0.477
(1.00) 		1
(1.00) 		0.863
(1.00) 		0.362
(1.00) 		0.736
(1.00) 		1
(1.00) 		0.908
(1.00) 		0.946
(1.00)
C18ORF26 17 (6%) 261 0.58
(1.00) 		0.785
(1.00) 		0.579
(1.00) 		0.256
(1.00) 		0.147
(1.00) 		0.29
(1.00) 		0.897
(1.00) 		0.353
(1.00) 		0.229
(1.00) 		0.364
(1.00)
VSNL1 4 (1%) 274 1
(1.00) 		0.46
(1.00) 		0.151
(1.00) 		0.448
(1.00) 		0.326
(1.00) 		0.28
(1.00) 		0.286
(1.00) 		1
(1.00) 		0.474
(1.00) 		0.881
(1.00)
CRB1 52 (19%) 226 0.0843
(1.00) 		0.732
(1.00) 		0.506
(1.00) 		0.941
(1.00) 		0.0516
(1.00) 		0.0532
(1.00) 		0.244
(1.00) 		0.074
(1.00) 		0.0662
(1.00) 		0.251
(1.00)
PREX2 68 (24%) 210 0.897
(1.00) 		0.0385
(1.00) 		0.709
(1.00) 		0.551
(1.00) 		0.461
(1.00) 		0.838
(1.00) 		0.911
(1.00) 		0.1
(1.00) 		0.917
(1.00) 		0.0307
(1.00)
SPANXN5 8 (3%) 270 0.673
(1.00) 		0.157
(1.00) 		0.332
(1.00) 		0.445
(1.00) 		0.902
(1.00) 		0.454
(1.00) 		0.812
(1.00) 		0.761
(1.00) 		0.604
(1.00) 		0.863
(1.00)
NMS 13 (5%) 265 0.901
(1.00) 		0.23
(1.00) 		0.311
(1.00) 		0.649
(1.00) 		0.0335
(1.00) 		0.267
(1.00) 		0.934
(1.00) 		0.909
(1.00) 		0.822
(1.00) 		0.971
(1.00)
RERG 11 (4%) 267 1
(1.00) 		0.861
(1.00) 		0.691
(1.00) 		0.267
(1.00) 		0.692
(1.00) 		0.924
(1.00) 		0.0667
(1.00) 		0.318
(1.00) 		0.191
(1.00) 		0.432
(1.00)
GLYATL2 25 (9%) 253 0.628
(1.00) 		0.158
(1.00) 		0.832
(1.00) 		1
(1.00) 		0.344
(1.00) 		0.252
(1.00) 		0.474
(1.00) 		0.599
(1.00) 		0.153
(1.00) 		0.943
(1.00)
POTEG 31 (11%) 247 0.129
(1.00) 		0.0123
(1.00) 		0.339
(1.00) 		0.128
(1.00) 		0.53
(1.00) 		0.0677
(1.00) 		0.205
(1.00) 		0.243
(1.00) 		0.06
(1.00) 		0.524
(1.00)
ACD 10 (4%) 268 0.0491
(1.00) 		1
(1.00) 		0.956
(1.00) 		0.373
(1.00) 		0.662
(1.00) 		0.272
(1.00) 		0.153
(1.00) 		0.149
(1.00) 		0.722
(1.00) 		0.157
(1.00)
AREG 7 (3%) 271 0.682
(1.00) 		0.893
(1.00) 		0.708
(1.00) 		0.537
(1.00) 		0.896
(1.00) 		0.691
(1.00) 		0.795
(1.00) 		0.728
(1.00) 		0.341
(1.00) 		0.939
(1.00)
STARD6 12 (4%) 266 0.931
(1.00) 		0.531
(1.00) 		0.374
(1.00) 		0.587
(1.00) 		0.536
(1.00) 		0.696
(1.00) 		0.311
(1.00) 		0.0904
(1.00) 		0.336
(1.00) 		0.0992
(1.00)
CDK4 7 (3%) 271 0.738
(1.00) 		0.445
(1.00) 		0.0439
(1.00) 		0.445
(1.00) 		1
(1.00) 		0.417
(1.00) 		0.333
(1.00) 		0.332
(1.00) 		1
(1.00) 		0.344
(1.00)
PRSS48 6 (2%) 272 0.0606
(1.00) 		0.585
(1.00) 		0.365
(1.00) 		0.278
(1.00) 		0.00437
(1.00) 		0.00671
(1.00) 		0.579
(1.00) 		0.824
(1.00) 		0.111
(1.00) 		0.267
(1.00)
FAM58A 5 (2%) 273 0.811
(1.00) 		0.741
(1.00) 		0.91
(1.00) 		0.547
(1.00) 		0.164
(1.00) 		0.525
(1.00) 		0.856
(1.00) 		0.281
(1.00) 		0.231
(1.00) 		0.363
(1.00)
COL4A4 72 (26%) 206 0.0753
(1.00) 		0.138
(1.00) 		0.47
(1.00) 		0.924
(1.00) 		0.117
(1.00) 		0.0813
(1.00) 		0.405
(1.00) 		0.97
(1.00) 		0.411
(1.00) 		0.282
(1.00)
RPGRIP1 25 (9%) 253 0.118
(1.00) 		0.383
(1.00) 		0.316
(1.00) 		0.515
(1.00) 		0.171
(1.00) 		0.00313
(1.00) 		0.119
(1.00) 		0.103
(1.00) 		0.0553
(1.00) 		0.0606
(1.00)
LPAR1 13 (5%) 265 0.55
(1.00) 		0.0408
(1.00) 		0.77
(1.00) 		0.5
(1.00) 		0.0787
(1.00) 		0.327
(1.00) 		0.807
(1.00) 		0.394
(1.00) 		0.703
(1.00) 		0.574
(1.00)
GNAI2 5 (2%) 273 1
(1.00) 		0.531
(1.00) 		0.284
(1.00) 		0.055
(1.00) 		1
(1.00) 		0.723
(1.00) 		0.531
(1.00) 		0.38
(1.00) 		0.111
(1.00) 		0.634
(1.00)
PTPRT 81 (29%) 197 0.106
(1.00) 		0.119
(1.00) 		0.263
(1.00) 		0.761
(1.00) 		0.935
(1.00) 		0.67
(1.00) 		0.315
(1.00) 		0.647
(1.00) 		0.252
(1.00) 		0.203
(1.00)
PDE1A 39 (14%) 239 0.686
(1.00) 		0.609
(1.00) 		0.705
(1.00) 		0.202
(1.00) 		0.0976
(1.00) 		0.0333
(1.00) 		0.49
(1.00) 		0.203
(1.00) 		0.0652
(1.00) 		0.183
(1.00)
KIAA2022 54 (19%) 224 0.78
(1.00) 		0.682
(1.00) 		0.434
(1.00) 		0.716
(1.00) 		0.316
(1.00) 		0.499
(1.00) 		0.516
(1.00) 		0.224
(1.00) 		0.356
(1.00) 		0.0542
(1.00)
HRNR 56 (20%) 222 0.251
(1.00) 		0.271
(1.00) 		0.682
(1.00) 		0.538
(1.00) 		0.243
(1.00) 		0.97
(1.00) 		0.0984
(1.00) 		0.637
(1.00) 		0.282
(1.00) 		0.588
(1.00)
EIF3D 4 (1%) 274 0.918
(1.00) 		0.833
(1.00) 		0.336
(1.00) 		0.794
(1.00) 		1
(1.00) 		0.476
(1.00) 		0.574
(1.00) 		0.412
(1.00) 		0.309
(1.00) 		0.53
(1.00)
SLC15A2 32 (12%) 246 0.624
(1.00) 		0.365
(1.00) 		0.795
(1.00) 		1
(1.00) 		0.833
(1.00) 		0.738
(1.00) 		0.769
(1.00) 		0.454
(1.00) 		0.63
(1.00) 		0.395
(1.00)
ST6GAL2 42 (15%) 236 0.574
(1.00) 		0.218
(1.00) 		0.424
(1.00) 		0.468
(1.00) 		0.914
(1.00) 		0.0944
(1.00) 		0.4
(1.00) 		0.507
(1.00) 		0.33
(1.00) 		0.667
(1.00)
DNAJC5B 13 (5%) 265 0.161
(1.00) 		0.473
(1.00) 		1
(1.00) 		0.525
(1.00) 		0.678
(1.00) 		0.537
(1.00) 		0.00843
(1.00) 		0.128
(1.00) 		0.0225
(1.00) 		0.117
(1.00)
TRHDE 47 (17%) 231 0.843
(1.00) 		0.265
(1.00) 		0.136
(1.00) 		0.659
(1.00) 		0.271
(1.00) 		1
(1.00) 		0.52
(1.00) 		0.738
(1.00) 		0.21
(1.00) 		0.0619
(1.00)
COL19A1 36 (13%) 242 0.145
(1.00) 		0.0522
(1.00) 		0.0793
(1.00) 		0.324
(1.00) 		0.781
(1.00) 		0.626
(1.00) 		0.906
(1.00) 		0.663
(1.00) 		0.739
(1.00) 		0.639
(1.00)
OR4K1 30 (11%) 248 0.662
(1.00) 		0.352
(1.00) 		0.183
(1.00) 		0.827
(1.00) 		1
(1.00) 		0.372
(1.00) 		0.433
(1.00) 		0.148
(1.00) 		0.532
(1.00) 		0.363
(1.00)
SLC38A1 20 (7%) 258 0.398
(1.00) 		0.552
(1.00) 		0.394
(1.00) 		1
(1.00) 		0.463
(1.00) 		0.384
(1.00) 		0.767
(1.00) 		0.683
(1.00) 		0.4
(1.00) 		0.81
(1.00)
TMC5 45 (16%) 233 0.239
(1.00) 		0.0128
(1.00) 		0.433
(1.00) 		0.623
(1.00) 		0.00171
(1.00) 		0.0177
(1.00) 		0.0419
(1.00) 		0.0948
(1.00) 		0.105
(1.00) 		0.00295
(1.00)
TBC1D3B 5 (2%) 273 0.756
(1.00) 		0.269
(1.00) 		0.195
(1.00) 		0.445
(1.00) 		0.857
(1.00) 		0.723
(1.00) 		0.856
(1.00) 		0.613
(1.00) 		0.864
(1.00) 		0.69
(1.00)
NOP10 3 (1%) 275 1
(1.00) 		0.498
(1.00) 		0.391
(1.00) 		0.243
(1.00) 		1
(1.00) 		0.62
(1.00) 		1
(1.00) 		1
(1.00) 		0.63
(1.00) 		1
(1.00)
CTNNB1 14 (5%) 264 0.892
(1.00) 		0.726
(1.00) 		0.35
(1.00) 		0.464
(1.00) 		0.273
(1.00) 		0.349
(1.00) 		0.546
(1.00) 		0.757
(1.00) 		0.822
(1.00) 		0.266
(1.00)
SNCAIP 49 (18%) 229 0.191
(1.00) 		0.862
(1.00) 		0.505
(1.00) 		0.525
(1.00) 		0.936
(1.00) 		0.411
(1.00) 		0.604
(1.00) 		0.737
(1.00) 		0.45
(1.00) 		0.0919
(1.00)
CD2 21 (8%) 257 0.331
(1.00) 		0.415
(1.00) 		0.528
(1.00) 		0.864
(1.00) 		0.687
(1.00) 		0.722
(1.00) 		1
(1.00) 		0.594
(1.00) 		0.867
(1.00) 		0.641
(1.00)
FASLG 12 (4%) 266 0.215
(1.00) 		0.152
(1.00) 		0.433
(1.00) 		0.593
(1.00) 		0.661
(1.00) 		0.64
(1.00) 		0.0967
(1.00) 		0.523
(1.00) 		0.0827
(1.00) 		0.467
(1.00)
LIPI 25 (9%) 253 0.894
(1.00) 		0.76
(1.00) 		0.898
(1.00) 		0.596
(1.00) 		0.297
(1.00) 		0.325
(1.00) 		0.441
(1.00) 		0.0751
(1.00) 		0.295
(1.00) 		0.149
(1.00)
C7ORF58 35 (13%) 243 0.659
(1.00) 		0.333
(1.00) 		0.0933
(1.00) 		0.0273
(1.00) 		0.889
(1.00) 		0.948
(1.00) 		0.706
(1.00) 		0.22
(1.00) 		0.912
(1.00) 		0.573
(1.00)
COL5A1 56 (20%) 222 0.135
(1.00) 		0.379
(1.00) 		0.233
(1.00) 		0.399
(1.00) 		0.494
(1.00) 		0.627
(1.00) 		0.618
(1.00) 		0.936
(1.00) 		0.173
(1.00) 		0.123
(1.00)
SERPINA10 28 (10%) 250 0.965
(1.00) 		0.0635
(1.00) 		0.215
(1.00) 		0.305
(1.00) 		0.569
(1.00) 		0.544
(1.00) 		0.528
(1.00) 		0.461
(1.00) 		0.324
(1.00) 		0.432
(1.00)
C1ORF127 20 (7%) 258 0.285
(1.00) 		0.538
(1.00) 		0.58
(1.00) 		0.0384
(1.00) 		0.429
(1.00) 		0.784
(1.00) 		0.478
(1.00) 		0.908
(1.00) 		0.845
(1.00) 		0.885
(1.00)
C3ORF71 4 (1%) 274 0.517
(1.00) 		0.385
(1.00) 		0.483
(1.00) 		0.16
(1.00) 		0.149
(1.00) 		0.136
(1.00) 		0.819
(1.00) 		0.137
(1.00) 		0.691
(1.00) 		0.421
(1.00)
TTN 202 (73%) 76 0.838
(1.00) 		0.0026
(1.00) 		0.456
(1.00) 		0.32
(1.00) 		0.296
(1.00) 		0.463
(1.00) 		0.0462
(1.00) 		0.273
(1.00) 		0.213
(1.00) 		0.574
(1.00)
IDO2 17 (6%) 261 0.613
(1.00) 		0.263
(1.00) 		0.0969
(1.00) 		0.464
(1.00) 		0.786
(1.00) 		0.766
(1.00) 		0.417
(1.00) 		0.312
(1.00) 		0.437
(1.00) 		0.346
(1.00)
DGAT2L6 11 (4%) 267 0.666
(1.00) 		0.431
(1.00) 		0.501
(1.00) 		0.688
(1.00) 		0.22
(1.00) 		0.412
(1.00) 		0.792
(1.00) 		0.73
(1.00) 		0.191
(1.00) 		0.679
(1.00)
SLC9A4 29 (10%) 249 0.256
(1.00) 		0.0378
(1.00) 		0.815
(1.00) 		1
(1.00) 		0.78
(1.00) 		0.657
(1.00) 		0.467
(1.00) 		0.775
(1.00) 		0.376
(1.00) 		0.69
(1.00)
RPAP1 13 (5%) 265 0.834
(1.00) 		0.473
(1.00) 		0.474
(1.00) 		0.303
(1.00) 		0.94
(1.00) 		0.872
(1.00) 		0.867
(1.00) 		1
(1.00) 		0.426
(1.00) 		0.969
(1.00)
MKX 17 (6%) 261 0.77
(1.00) 		0.597
(1.00) 		1
(1.00) 		0.64
(1.00) 		0.0185
(1.00) 		0.122
(1.00) 		0.174
(1.00) 		0.131
(1.00) 		0.119
(1.00) 		0.02
(1.00)
FAM19A1 13 (5%) 265 0.122
(1.00) 		0.939
(1.00) 		0.576
(1.00) 		0.156
(1.00) 		0.588
(1.00) 		1
(1.00) 		0.77
(1.00) 		0.695
(1.00) 		0.937
(1.00) 		0.218
(1.00)
GALNT14 21 (8%) 257 0.54
(1.00) 		0.931
(1.00) 		0.402
(1.00) 		1
(1.00) 		0.217
(1.00) 		0.207
(1.00) 		0.733
(1.00) 		0.541
(1.00) 		0.551
(1.00) 		0.778
(1.00)
CERKL 18 (6%) 260 0.342
(1.00) 		0.0438
(1.00) 		0.768
(1.00) 		0.916
(1.00) 		0.367
(1.00) 		0.474
(1.00) 		1
(1.00) 		0.708
(1.00) 		1
(1.00) 		0.648
(1.00)
OR4K2 28 (10%) 250 0.712
(1.00) 		0.0014
(1.00) 		0.841
(1.00) 		0.0141
(1.00) 		0.641
(1.00) 		0.398
(1.00) 		0.256
(1.00) 		0.523
(1.00) 		0.627
(1.00) 		0.444
(1.00)
GK2 32 (12%) 246 0.533
(1.00) 		0.622
(1.00) 		0.326
(1.00) 		0.439
(1.00) 		0.946
(1.00) 		0.222
(1.00) 		0.2
(1.00) 		0.746
(1.00) 		0.778
(1.00) 		0.338
(1.00)
C12ORF50 23 (8%) 255 0.561
(1.00) 		0.694
(1.00) 		0.573
(1.00) 		1
(1.00) 		1
(1.00) 		0.677
(1.00) 		0.577
(1.00) 		0.921
(1.00) 		0.4
(1.00) 		1
(1.00)
ZIM3 26 (9%) 252 0.681
(1.00) 		0.27
(1.00) 		0.579
(1.00) 		0.256
(1.00) 		0.26
(1.00) 		0.698
(1.00) 		0.225
(1.00) 		0.213
(1.00) 		0.191
(1.00) 		0.192
(1.00)
MAP2K1 14 (5%) 264 0.0637
(1.00) 		0.00749
(1.00) 		0.364
(1.00) 		0.0501
(1.00) 		0.444
(1.00) 		0.371
(1.00) 		0.13
(1.00) 		0.319
(1.00) 		0.184
(1.00) 		0.505
(1.00)
DAAM2 7 (3%) 271 0.514
(1.00) 		0.0384
(1.00) 		0.119
(1.00) 		0.0326
(1.00) 		0.487
(1.00) 		0.854
(1.00) 		0.426
(1.00) 		0.886
(1.00)
GZMA 11 (4%) 267 0.652
(1.00) 		0.742
(1.00) 		0.726
(1.00) 		0.827
(1.00) 		0.926
(1.00) 		0.673
(1.00) 		0.579
(1.00) 		1
(1.00) 		0.738
(1.00) 		0.443
(1.00)
ACTC1 15 (5%) 263 0.0877
(1.00) 		0.111
(1.00) 		0.466
(1.00) 		0.768
(1.00) 		0.389
(1.00) 		0.0798
(1.00) 		0.445
(1.00) 		0.328
(1.00) 		0.532
(1.00) 		0.068
(1.00)
ADAMTS2 29 (10%) 249 0.0877
(1.00) 		0.473
(1.00) 		0.205
(1.00) 		0.91
(1.00) 		0.822
(1.00) 		0.712
(1.00) 		0.272
(1.00) 		0.308
(1.00) 		0.362
(1.00) 		0.462
(1.00)
KCNB2 59 (21%) 219 0.077
(1.00) 		0.0414
(1.00) 		0.18
(1.00) 		0.426
(1.00) 		0.197
(1.00) 		0.608
(1.00) 		0.415
(1.00) 		0.245
(1.00) 		0.727
(1.00) 		0.432
(1.00)
IL7R 30 (11%) 248 0.384
(1.00) 		0.00491
(1.00) 		0.125
(1.00) 		0.0415
(1.00) 		0.692
(1.00) 		0.167
(1.00) 		0.00231
(1.00) 		0.307
(1.00) 		0.00963
(1.00) 		0.226
(1.00)
RAPGEF5 15 (5%) 263 0.948
(1.00) 		0.78
(1.00) 		0.794
(1.00) 		0.755
(1.00) 		0.604
(1.00) 		0.743
(1.00) 		0.315
(1.00) 		0.288
(1.00) 		0.299
(1.00) 		0.368
(1.00)
OR4N4 15 (5%) 263 0.017
(1.00) 		0.529
(1.00) 		0.296
(1.00) 		0.335
(1.00) 		0.0194
(1.00) 		0.158
(1.00) 		0.18
(1.00) 		0.831
(1.00) 		1
(1.00) 		0.685
(1.00)
BMP5 26 (9%) 252 0.486
(1.00) 		0.00114
(1.00) 		0.134
(1.00) 		0.0468
(1.00) 		0.526
(1.00) 		0.448
(1.00) 		0.954
(1.00) 		0.519
(1.00) 		0.738
(1.00) 		0.713
(1.00)
HNF4G 26 (9%) 252 0.349
(1.00) 		0.23
(1.00) 		0.468
(1.00) 		0.74
(1.00) 		0.26
(1.00) 		0.911
(1.00) 		0.338
(1.00) 		0.703
(1.00) 		0.455
(1.00) 		0.818
(1.00)
C8B 38 (14%) 240 0.00208
(1.00) 		1
(1.00) 		0.0539
(1.00) 		0.137
(1.00) 		0.743
(1.00) 		0.498
(1.00) 		1
(1.00) 		0.311
(1.00) 		0.677
(1.00) 		0.129
(1.00)
CRNN 20 (7%) 258 0.676
(1.00) 		0.0736
(1.00) 		0.00265
(1.00) 		0.699
(1.00) 		0.094
(1.00) 		0.456
(1.00) 		0.173
(1.00) 		0.508
(1.00) 		0.24
(1.00) 		0.745
(1.00)
UNC119B 6 (2%) 272 0.0866
(1.00) 		0.334
(1.00) 		0.262
(1.00) 		1
(1.00) 		0.59
(1.00) 		0.431
(1.00) 		0.856
(1.00) 		1
(1.00) 		0.737
(1.00) 		0.824
(1.00)
OPN5 8 (3%) 270 0.79
(1.00) 		1
(1.00) 		0.928
(1.00) 		1
(1.00) 		0.228
(1.00) 		0.592
(1.00) 		1
(1.00) 		0.413
(1.00) 		1
(1.00) 		0.886
(1.00)
ZSWIM2 30 (11%) 248 0.913
(1.00) 		0.767
(1.00) 		0.484
(1.00) 		0.344
(1.00) 		0.702
(1.00) 		0.668
(1.00) 		0.739
(1.00) 		0.907
(1.00) 		0.594
(1.00) 		0.195
(1.00)
MPP6 15 (5%) 263 0.822
(1.00) 		0.367
(1.00) 		0.466
(1.00) 		0.649
(1.00) 		0.0352
(1.00) 		0.699
(1.00) 		0.294
(1.00) 		0.328
(1.00) 		0.841
(1.00) 		0.465
(1.00)
DACH1 25 (9%) 253 0.289
(1.00) 		0.0428
(1.00) 		0.163
(1.00) 		1
(1.00) 		0.344
(1.00) 		0.482
(1.00) 		0.474
(1.00) 		0.181
(1.00) 		0.373
(1.00) 		0.245
(1.00)
COL1A1 38 (14%) 240 0.0303
(1.00) 		0.0967
(1.00) 		0.129
(1.00) 		0.074
(1.00) 		0.115
(1.00) 		0.258
(1.00) 		0.475
(1.00) 		0.711
(1.00) 		0.271
(1.00) 		0.739
(1.00)
PTPN22 24 (9%) 254 0.461
(1.00) 		0.0633
(1.00) 		0.438
(1.00) 		0.0181
(1.00) 		0.755
(1.00) 		0.49
(1.00) 		0.263
(1.00) 		0.678
(1.00) 		0.132
(1.00) 		0.673
(1.00)
DCDC1 7 (3%) 271 0.629
(1.00) 		0.137
(1.00) 		0.284
(1.00) 		0.608
(1.00) 		0.299
(1.00) 		0.618
(1.00) 		0.385
(1.00) 		1
(1.00) 		0.512
(1.00) 		1
(1.00)
WDR65 21 (8%) 257 0.832
(1.00) 		0.705
(1.00) 		0.283
(1.00) 		0.266
(1.00) 		0.473
(1.00) 		0.191
(1.00) 		0.0807
(1.00) 		0.829
(1.00) 		0.0674
(1.00) 		0.835
(1.00)
TFEC 20 (7%) 258 0.0249
(1.00) 		0.182
(1.00) 		0.489
(1.00) 		0.279
(1.00) 		0.731
(1.00) 		0.384
(1.00) 		0.623
(1.00) 		0.447
(1.00) 		0.94
(1.00) 		0.337
(1.00)
NOTCH4 51 (18%) 227 0.259
(1.00) 		0.859
(1.00) 		0.489
(1.00) 		0.0734
(1.00) 		0.404
(1.00) 		0.871
(1.00) 		0.0351
(1.00) 		0.734
(1.00) 		0.149
(1.00) 		0.0102
(1.00)
KL 26 (9%) 252 0.172
(1.00) 		0.23
(1.00) 		0.0803
(1.00) 		0.329
(1.00) 		0.601
(1.00) 		0.723
(1.00) 		0.337
(1.00) 		0.288
(1.00) 		0.44
(1.00) 		0.143
(1.00)
CAPSL 17 (6%) 261 0.0923
(1.00) 		0.597
(1.00) 		0.79
(1.00) 		0.449
(1.00) 		0.057
(1.00) 		0.0174
(1.00) 		0.719
(1.00) 		0.841
(1.00) 		0.855
(1.00) 		0.673
(1.00)
ACMSD 13 (5%) 265 1
(1.00) 		0.68
(1.00) 		0.74
(1.00) 		0.901
(1.00) 		0.546
(1.00) 		0.151
(1.00) 		0.29
(1.00) 		0.831
(1.00) 		0.878
(1.00) 		0.856
(1.00)
TIMD4 16 (6%) 262 0.26
(1.00) 		0.391
(1.00) 		0.86
(1.00) 		0.542
(1.00) 		0.415
(1.00) 		0.632
(1.00) 		0.712
(1.00) 		0.202
(1.00) 		0.454
(1.00) 		0.574
(1.00)
C12ORF36 10 (4%) 268 0.699
(1.00) 		0.61
(1.00) 		0.618
(1.00) 		0.231
(1.00) 		0.662
(1.00) 		0.699
(1.00) 		0.465
(1.00) 		0.282
(1.00) 		0.255
(1.00) 		0.7
(1.00)
SDPR 19 (7%) 259 0.645
(1.00) 		0.413
(1.00) 		0.975
(1.00) 		0.64
(1.00) 		0.29
(1.00) 		0.834
(1.00) 		0.802
(1.00) 		1
(1.00) 		0.845
(1.00) 		0.572
(1.00)
GPC5 31 (11%) 247 0.647
(1.00) 		0.473
(1.00) 		0.73
(1.00) 		0.681
(1.00) 		0.0469
(1.00) 		0.178
(1.00) 		0.653
(1.00) 		0.916
(1.00) 		0.811
(1.00) 		0.912
(1.00)
CCDC28A 10 (4%) 268 0.248
(1.00) 		0.512
(1.00) 		0.866
(1.00) 		0.186
(1.00) 		0.307
(1.00) 		0.594
(1.00) 		0.845
(1.00) 		0.626
(1.00) 		1
(1.00) 		0.928
(1.00)
DDX3X 19 (7%) 259 0.484
(1.00) 		0.928
(1.00) 		0.58
(1.00) 		0.195
(1.00) 		0.58
(1.00) 		0.834
(1.00) 		0.942
(1.00) 		0.201
(1.00) 		0.568
(1.00) 		0.543
(1.00)
MC2R 5 (2%) 273 0.87
(1.00) 		0.531
(1.00) 		1
(1.00) 		0.289
(1.00) 		1
(1.00) 		0.313
(1.00) 		0.321
(1.00) 		0.803
(1.00) 		0.189
(1.00) 		0.748
(1.00)
'C15ORF23 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.812 (Fisher's exact test), Q value = 1

Table S1.  Gene #1: 'C15ORF23 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
C15ORF23 MUTATED 4 4 3 8
C15ORF23 WILD-TYPE 78 47 44 90
'C15ORF23 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0498 (Fisher's exact test), Q value = 1

Table S2.  Gene #1: 'C15ORF23 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 95 106
C15ORF23 MUTATED 1 9 9
C15ORF23 WILD-TYPE 76 86 97

Figure S1.  Get High-res Image Gene #1: 'C15ORF23 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'C15ORF23 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.714 (Fisher's exact test), Q value = 1

Table S3.  Gene #1: 'C15ORF23 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
C15ORF23 MUTATED 4 3 2 1
C15ORF23 WILD-TYPE 42 55 24 37
'C15ORF23 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.916 (Fisher's exact test), Q value = 1

Table S4.  Gene #1: 'C15ORF23 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 38 70 60
C15ORF23 MUTATED 2 5 3
C15ORF23 WILD-TYPE 36 65 57
'C15ORF23 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.856 (Fisher's exact test), Q value = 1

Table S5.  Gene #1: 'C15ORF23 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 78 102
C15ORF23 MUTATED 7 6 6
C15ORF23 WILD-TYPE 91 72 96
'C15ORF23 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.402 (Fisher's exact test), Q value = 1

Table S6.  Gene #1: 'C15ORF23 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 134 71
C15ORF23 MUTATED 4 12 3
C15ORF23 WILD-TYPE 69 122 68
'C15ORF23 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.897 (Fisher's exact test), Q value = 1

Table S7.  Gene #1: 'C15ORF23 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 117 85
C15ORF23 MUTATED 3 8 5
C15ORF23 WILD-TYPE 64 109 80
'C15ORF23 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.861 (Fisher's exact test), Q value = 1

Table S8.  Gene #1: 'C15ORF23 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 160 82
C15ORF23 MUTATED 1 11 4
C15ORF23 WILD-TYPE 26 149 78
'C15ORF23 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.451 (Fisher's exact test), Q value = 1

Table S9.  Gene #1: 'C15ORF23 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 82 110 77
C15ORF23 MUTATED 3 9 4
C15ORF23 WILD-TYPE 79 101 73
'C15ORF23 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.823 (Fisher's exact test), Q value = 1

Table S10.  Gene #1: 'C15ORF23 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 79 45 120
C15ORF23 MUTATED 1 4 4 7
C15ORF23 WILD-TYPE 24 75 41 113
'ANKRD20A4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.482 (Fisher's exact test), Q value = 1

Table S11.  Gene #2: 'ANKRD20A4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
ANKRD20A4 MUTATED 1 1 0 4
ANKRD20A4 WILD-TYPE 81 50 47 94
'ANKRD20A4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.334 (Fisher's exact test), Q value = 1

Table S12.  Gene #2: 'ANKRD20A4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 95 106
ANKRD20A4 MUTATED 0 3 3
ANKRD20A4 WILD-TYPE 77 92 103
'ANKRD20A4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.827 (Fisher's exact test), Q value = 1

Table S13.  Gene #2: 'ANKRD20A4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
ANKRD20A4 MUTATED 2 1 0 1
ANKRD20A4 WILD-TYPE 44 57 26 37
'ANKRD20A4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.213 (Fisher's exact test), Q value = 1

Table S14.  Gene #2: 'ANKRD20A4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 38 70 60
ANKRD20A4 MUTATED 2 2 0
ANKRD20A4 WILD-TYPE 36 68 60
'ANKRD20A4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0654 (Fisher's exact test), Q value = 1

Table S15.  Gene #2: 'ANKRD20A4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 78 102
ANKRD20A4 MUTATED 0 4 2
ANKRD20A4 WILD-TYPE 98 74 100
'ANKRD20A4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.375 (Fisher's exact test), Q value = 1

Table S16.  Gene #2: 'ANKRD20A4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 134 71
ANKRD20A4 MUTATED 0 4 2
ANKRD20A4 WILD-TYPE 73 130 69
'ANKRD20A4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S17.  Gene #2: 'ANKRD20A4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 117 85
ANKRD20A4 MUTATED 1 3 2
ANKRD20A4 WILD-TYPE 66 114 83
'ANKRD20A4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S18.  Gene #2: 'ANKRD20A4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 160 82
ANKRD20A4 MUTATED 0 4 2
ANKRD20A4 WILD-TYPE 27 156 80
'ANKRD20A4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.252 (Fisher's exact test), Q value = 1

Table S19.  Gene #2: 'ANKRD20A4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 82 110 77
ANKRD20A4 MUTATED 0 4 2
ANKRD20A4 WILD-TYPE 82 106 75
'ANKRD20A4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.812 (Fisher's exact test), Q value = 1

Table S20.  Gene #2: 'ANKRD20A4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 79 45 120
ANKRD20A4 MUTATED 0 2 0 4
ANKRD20A4 WILD-TYPE 25 77 45 116
'CDKN2A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.293 (Fisher's exact test), Q value = 1

Table S21.  Gene #3: 'CDKN2A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
CDKN2A MUTATED 12 9 10 10
CDKN2A WILD-TYPE 70 42 37 88
'CDKN2A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0807 (Fisher's exact test), Q value = 1

Table S22.  Gene #3: 'CDKN2A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 95 106
CDKN2A MUTATED 7 20 14
CDKN2A WILD-TYPE 70 75 92
'CDKN2A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.153 (Fisher's exact test), Q value = 1

Table S23.  Gene #3: 'CDKN2A MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
CDKN2A MUTATED 7 6 8 6
CDKN2A WILD-TYPE 39 52 18 32
'CDKN2A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.946 (Fisher's exact test), Q value = 1

Table S24.  Gene #3: 'CDKN2A MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 38 70 60
CDKN2A MUTATED 6 12 9
CDKN2A WILD-TYPE 32 58 51
'CDKN2A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.802 (Fisher's exact test), Q value = 1

Table S25.  Gene #3: 'CDKN2A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 78 102
CDKN2A MUTATED 16 10 15
CDKN2A WILD-TYPE 82 68 87
'CDKN2A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.679 (Fisher's exact test), Q value = 1

Table S26.  Gene #3: 'CDKN2A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 134 71
CDKN2A MUTATED 13 19 9
CDKN2A WILD-TYPE 60 115 62
'CDKN2A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.769 (Fisher's exact test), Q value = 1

Table S27.  Gene #3: 'CDKN2A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 117 85
CDKN2A MUTATED 8 19 13
CDKN2A WILD-TYPE 59 98 72
'CDKN2A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.701 (Fisher's exact test), Q value = 1

Table S28.  Gene #3: 'CDKN2A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 160 82
CDKN2A MUTATED 4 26 10
CDKN2A WILD-TYPE 23 134 72
'CDKN2A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.883 (Fisher's exact test), Q value = 1

Table S29.  Gene #3: 'CDKN2A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 82 110 77
CDKN2A MUTATED 13 17 10
CDKN2A WILD-TYPE 69 93 67
'CDKN2A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.697 (Fisher's exact test), Q value = 1

Table S30.  Gene #3: 'CDKN2A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 79 45 120
CDKN2A MUTATED 4 10 5 21
CDKN2A WILD-TYPE 21 69 40 99
'NRAS MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00151 (Fisher's exact test), Q value = 1

Table S31.  Gene #4: 'NRAS MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
NRAS MUTATED 38 14 7 27
NRAS WILD-TYPE 44 37 40 71

Figure S2.  Get High-res Image Gene #4: 'NRAS MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'NRAS MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0108 (Fisher's exact test), Q value = 1

Table S32.  Gene #4: 'NRAS MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 95 106
NRAS MUTATED 22 40 24
NRAS WILD-TYPE 55 55 82

Figure S3.  Get High-res Image Gene #4: 'NRAS MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'NRAS MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.425 (Fisher's exact test), Q value = 1

Table S33.  Gene #4: 'NRAS MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
NRAS MUTATED 17 19 7 8
NRAS WILD-TYPE 29 39 19 30
'NRAS MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0168 (Fisher's exact test), Q value = 1

Table S34.  Gene #4: 'NRAS MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 38 70 60
NRAS MUTATED 15 13 23
NRAS WILD-TYPE 23 57 37

Figure S4.  Get High-res Image Gene #4: 'NRAS MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'NRAS MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.831 (Fisher's exact test), Q value = 1

Table S35.  Gene #4: 'NRAS MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 78 102
NRAS MUTATED 31 22 33
NRAS WILD-TYPE 67 56 69
'NRAS MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.476 (Fisher's exact test), Q value = 1

Table S36.  Gene #4: 'NRAS MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 134 71
NRAS MUTATED 24 37 25
NRAS WILD-TYPE 49 97 46
'NRAS MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.954 (Fisher's exact test), Q value = 1

Table S37.  Gene #4: 'NRAS MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 117 85
NRAS MUTATED 21 36 25
NRAS WILD-TYPE 46 81 60
'NRAS MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.68 (Fisher's exact test), Q value = 1

Table S38.  Gene #4: 'NRAS MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 160 82
NRAS MUTATED 9 51 22
NRAS WILD-TYPE 18 109 60
'NRAS MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.524 (Fisher's exact test), Q value = 1

Table S39.  Gene #4: 'NRAS MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 82 110 77
NRAS MUTATED 28 34 20
NRAS WILD-TYPE 54 76 57
'NRAS MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.35 (Fisher's exact test), Q value = 1

Table S40.  Gene #4: 'NRAS MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 79 45 120
NRAS MUTATED 9 20 11 42
NRAS WILD-TYPE 16 59 34 78
'BRAF MUTATION STATUS' versus 'CN_CNMF'

P value = 1.49e-05 (Fisher's exact test), Q value = 0.025

Table S41.  Gene #5: 'BRAF MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
BRAF MUTATED 25 28 35 52
BRAF WILD-TYPE 57 23 12 46

Figure S5.  Get High-res Image Gene #5: 'BRAF MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'BRAF MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0509 (Fisher's exact test), Q value = 1

Table S42.  Gene #5: 'BRAF MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 95 106
BRAF MUTATED 31 47 62
BRAF WILD-TYPE 46 48 44
'BRAF MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.499 (Fisher's exact test), Q value = 1

Table S43.  Gene #5: 'BRAF MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
BRAF MUTATED 24 24 14 21
BRAF WILD-TYPE 22 34 12 17
'BRAF MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.325 (Fisher's exact test), Q value = 1

Table S44.  Gene #5: 'BRAF MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 38 70 60
BRAF MUTATED 20 38 25
BRAF WILD-TYPE 18 32 35
'BRAF MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00778 (Fisher's exact test), Q value = 1

Table S45.  Gene #5: 'BRAF MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 78 102
BRAF MUTATED 60 40 40
BRAF WILD-TYPE 38 38 62

Figure S6.  Get High-res Image Gene #5: 'BRAF MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'BRAF MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 2e-04 (Fisher's exact test), Q value = 0.33

Table S46.  Gene #5: 'BRAF MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 134 71
BRAF MUTATED 44 75 21
BRAF WILD-TYPE 29 59 50

Figure S7.  Get High-res Image Gene #5: 'BRAF MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'BRAF MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.164 (Fisher's exact test), Q value = 1

Table S47.  Gene #5: 'BRAF MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 117 85
BRAF MUTATED 37 51 47
BRAF WILD-TYPE 30 66 38
'BRAF MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.193 (Fisher's exact test), Q value = 1

Table S48.  Gene #5: 'BRAF MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 160 82
BRAF MUTATED 16 73 46
BRAF WILD-TYPE 11 87 36
'BRAF MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.143 (Fisher's exact test), Q value = 1

Table S49.  Gene #5: 'BRAF MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 82 110 77
BRAF MUTATED 38 51 46
BRAF WILD-TYPE 44 59 31
'BRAF MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0551 (Fisher's exact test), Q value = 1

Table S50.  Gene #5: 'BRAF MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 79 45 120
BRAF MUTATED 14 46 26 49
BRAF WILD-TYPE 11 33 19 71
'OXA1L MUTATION STATUS' versus 'CN_CNMF'

P value = 0.417 (Fisher's exact test), Q value = 1

Table S51.  Gene #6: 'OXA1L MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
OXA1L MUTATED 4 2 0 2
OXA1L WILD-TYPE 78 49 47 96
'OXA1L MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.2 (Fisher's exact test), Q value = 1

Table S52.  Gene #6: 'OXA1L MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 95 106
OXA1L MUTATED 2 5 1
OXA1L WILD-TYPE 75 90 105
'OXA1L MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S53.  Gene #6: 'OXA1L MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
OXA1L MUTATED 1 2 1 1
OXA1L WILD-TYPE 45 56 25 37
'OXA1L MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.289 (Fisher's exact test), Q value = 1

Table S54.  Gene #6: 'OXA1L MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 38 70 60
OXA1L MUTATED 0 4 1
OXA1L WILD-TYPE 38 66 59
'OXA1L MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.437 (Fisher's exact test), Q value = 1

Table S55.  Gene #6: 'OXA1L MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 78 102
OXA1L MUTATED 1 3 4
OXA1L WILD-TYPE 97 75 98
'OXA1L MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.521 (Fisher's exact test), Q value = 1

Table S56.  Gene #6: 'OXA1L MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 134 71
OXA1L MUTATED 1 4 3
OXA1L WILD-TYPE 72 130 68
'OXA1L MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.382 (Fisher's exact test), Q value = 1

Table S57.  Gene #6: 'OXA1L MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 117 85
OXA1L MUTATED 3 4 1
OXA1L WILD-TYPE 64 113 84
'OXA1L MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.543 (Fisher's exact test), Q value = 1

Table S58.  Gene #6: 'OXA1L MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 160 82
OXA1L MUTATED 1 6 1
OXA1L WILD-TYPE 26 154 81
'OXA1L MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.731 (Fisher's exact test), Q value = 1

Table S59.  Gene #6: 'OXA1L MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 82 110 77
OXA1L MUTATED 3 4 1
OXA1L WILD-TYPE 79 106 76
'OXA1L MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.245 (Fisher's exact test), Q value = 1

Table S60.  Gene #6: 'OXA1L MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 79 45 120
OXA1L MUTATED 1 1 0 6
OXA1L WILD-TYPE 24 78 45 114
'TP53 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.861 (Fisher's exact test), Q value = 1

Table S61.  Gene #7: 'TP53 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
TP53 MUTATED 12 8 8 19
TP53 WILD-TYPE 70 43 39 79
'TP53 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0145 (Fisher's exact test), Q value = 1

Table S62.  Gene #7: 'TP53 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 95 106
TP53 MUTATED 6 23 18
TP53 WILD-TYPE 71 72 88

Figure S8.  Get High-res Image Gene #7: 'TP53 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'TP53 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.248 (Fisher's exact test), Q value = 1

Table S63.  Gene #7: 'TP53 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
TP53 MUTATED 5 8 3 10
TP53 WILD-TYPE 41 50 23 28
'TP53 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.44 (Fisher's exact test), Q value = 1

Table S64.  Gene #7: 'TP53 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 38 70 60
TP53 MUTATED 4 10 12
TP53 WILD-TYPE 34 60 48
'TP53 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.215 (Fisher's exact test), Q value = 1

Table S65.  Gene #7: 'TP53 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 78 102
TP53 MUTATED 13 18 16
TP53 WILD-TYPE 85 60 86
'TP53 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.667 (Fisher's exact test), Q value = 1

Table S66.  Gene #7: 'TP53 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 134 71
TP53 MUTATED 10 25 12
TP53 WILD-TYPE 63 109 59
'TP53 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S67.  Gene #7: 'TP53 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 117 85
TP53 MUTATED 10 19 13
TP53 WILD-TYPE 57 98 72
'TP53 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.776 (Fisher's exact test), Q value = 1

Table S68.  Gene #7: 'TP53 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 160 82
TP53 MUTATED 4 27 11
TP53 WILD-TYPE 23 133 71
'TP53 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.766 (Fisher's exact test), Q value = 1

Table S69.  Gene #7: 'TP53 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 82 110 77
TP53 MUTATED 14 18 10
TP53 WILD-TYPE 68 92 67
'TP53 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.618 (Fisher's exact test), Q value = 1

Table S70.  Gene #7: 'TP53 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 79 45 120
TP53 MUTATED 4 9 7 22
TP53 WILD-TYPE 21 70 38 98
'STK19 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.735 (Fisher's exact test), Q value = 1

Table S71.  Gene #8: 'STK19 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
STK19 MUTATED 3 3 1 6
STK19 WILD-TYPE 79 48 46 92
'STK19 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0408 (Fisher's exact test), Q value = 1

Table S72.  Gene #8: 'STK19 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 95 106
STK19 MUTATED 0 6 7
STK19 WILD-TYPE 77 89 99

Figure S9.  Get High-res Image Gene #8: 'STK19 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'STK19 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.142 (Fisher's exact test), Q value = 1

Table S73.  Gene #8: 'STK19 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
STK19 MUTATED 2 0 2 2
STK19 WILD-TYPE 44 58 24 36
'STK19 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.501 (Fisher's exact test), Q value = 1

Table S74.  Gene #8: 'STK19 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 38 70 60
STK19 MUTATED 0 3 3
STK19 WILD-TYPE 38 67 57
'STK19 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.588 (Fisher's exact test), Q value = 1

Table S75.  Gene #8: 'STK19 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 78 102
STK19 MUTATED 3 5 5
STK19 WILD-TYPE 95 73 97
'STK19 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.621 (Fisher's exact test), Q value = 1

Table S76.  Gene #8: 'STK19 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 134 71
STK19 MUTATED 2 8 3
STK19 WILD-TYPE 71 126 68
'STK19 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.602 (Fisher's exact test), Q value = 1

Table S77.  Gene #8: 'STK19 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 117 85
STK19 MUTATED 2 7 3
STK19 WILD-TYPE 65 110 82
'STK19 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.561 (Fisher's exact test), Q value = 1

Table S78.  Gene #8: 'STK19 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 160 82
STK19 MUTATED 0 9 3
STK19 WILD-TYPE 27 151 79
'STK19 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.426 (Fisher's exact test), Q value = 1

Table S79.  Gene #8: 'STK19 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 82 110 77
STK19 MUTATED 2 7 3
STK19 WILD-TYPE 80 103 74
'STK19 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.56 (Fisher's exact test), Q value = 1

Table S80.  Gene #8: 'STK19 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 79 45 120
STK19 MUTATED 0 3 1 8
STK19 WILD-TYPE 25 76 44 112
'PCDHAC2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.472 (Fisher's exact test), Q value = 1

Table S81.  Gene #9: 'PCDHAC2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
PCDHAC2 MUTATED 45 30 22 59
PCDHAC2 WILD-TYPE 37 21 25 39
'PCDHAC2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0473 (Fisher's exact test), Q value = 1

Table S82.  Gene #9: 'PCDHAC2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 95 106
PCDHAC2 MUTATED 34 58 64
PCDHAC2 WILD-TYPE 43 37 42

Figure S10.  Get High-res Image Gene #9: 'PCDHAC2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'PCDHAC2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.441 (Fisher's exact test), Q value = 1

Table S83.  Gene #9: 'PCDHAC2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
PCDHAC2 MUTATED 28 29 16 25
PCDHAC2 WILD-TYPE 18 29 10 13
'PCDHAC2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.617 (Fisher's exact test), Q value = 1

Table S84.  Gene #9: 'PCDHAC2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 38 70 60
PCDHAC2 MUTATED 21 39 38
PCDHAC2 WILD-TYPE 17 31 22
'PCDHAC2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.718 (Fisher's exact test), Q value = 1

Table S85.  Gene #9: 'PCDHAC2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 78 102
PCDHAC2 MUTATED 57 45 54
PCDHAC2 WILD-TYPE 41 33 48
'PCDHAC2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.495 (Fisher's exact test), Q value = 1

Table S86.  Gene #9: 'PCDHAC2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 134 71
PCDHAC2 MUTATED 39 80 37
PCDHAC2 WILD-TYPE 34 54 34
'PCDHAC2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.851 (Fisher's exact test), Q value = 1

Table S87.  Gene #9: 'PCDHAC2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 117 85
PCDHAC2 MUTATED 38 68 46
PCDHAC2 WILD-TYPE 29 49 39
'PCDHAC2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.912 (Fisher's exact test), Q value = 1

Table S88.  Gene #9: 'PCDHAC2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 160 82
PCDHAC2 MUTATED 15 92 45
PCDHAC2 WILD-TYPE 12 68 37
'PCDHAC2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.435 (Fisher's exact test), Q value = 1

Table S89.  Gene #9: 'PCDHAC2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 82 110 77
PCDHAC2 MUTATED 47 66 39
PCDHAC2 WILD-TYPE 35 44 38
'PCDHAC2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.608 (Fisher's exact test), Q value = 1

Table S90.  Gene #9: 'PCDHAC2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 79 45 120
PCDHAC2 MUTATED 13 43 23 73
PCDHAC2 WILD-TYPE 12 36 22 47
'TMEM216 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.184 (Fisher's exact test), Q value = 1

Table S91.  Gene #10: 'TMEM216 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
TMEM216 MUTATED 1 0 3 4
TMEM216 WILD-TYPE 81 51 44 94
'TMEM216 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.438 (Fisher's exact test), Q value = 1

Table S92.  Gene #10: 'TMEM216 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 95 106
TMEM216 MUTATED 3 1 4
TMEM216 WILD-TYPE 74 94 102
'TMEM216 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0588 (Fisher's exact test), Q value = 1

Table S93.  Gene #10: 'TMEM216 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
TMEM216 MUTATED 4 0 2 1
TMEM216 WILD-TYPE 42 58 24 37
'TMEM216 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.789 (Fisher's exact test), Q value = 1

Table S94.  Gene #10: 'TMEM216 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 38 70 60
TMEM216 MUTATED 1 4 2
TMEM216 WILD-TYPE 37 66 58
'TMEM216 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.748 (Fisher's exact test), Q value = 1

Table S95.  Gene #10: 'TMEM216 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 78 102
TMEM216 MUTATED 3 3 2
TMEM216 WILD-TYPE 95 75 100
'TMEM216 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.817 (Fisher's exact test), Q value = 1

Table S96.  Gene #10: 'TMEM216 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 134 71
TMEM216 MUTATED 3 3 2
TMEM216 WILD-TYPE 70 131 69
'TMEM216 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.731 (Fisher's exact test), Q value = 1

Table S97.  Gene #10: 'TMEM216 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 117 85
TMEM216 MUTATED 3 3 2
TMEM216 WILD-TYPE 64 114 83
'TMEM216 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.467 (Fisher's exact test), Q value = 1

Table S98.  Gene #10: 'TMEM216 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 160 82
TMEM216 MUTATED 0 4 4
TMEM216 WILD-TYPE 27 156 78
'TMEM216 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.908 (Fisher's exact test), Q value = 1

Table S99.  Gene #10: 'TMEM216 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 82 110 77
TMEM216 MUTATED 3 3 2
TMEM216 WILD-TYPE 79 107 75
'TMEM216 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.71 (Fisher's exact test), Q value = 1

Table S100.  Gene #10: 'TMEM216 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 79 45 120
TMEM216 MUTATED 0 4 1 3
TMEM216 WILD-TYPE 25 75 44 117
'PTEN MUTATION STATUS' versus 'CN_CNMF'

P value = 0.456 (Fisher's exact test), Q value = 1

Table S101.  Gene #11: 'PTEN MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
PTEN MUTATED 8 6 4 5
PTEN WILD-TYPE 74 45 43 93
'PTEN MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0804 (Fisher's exact test), Q value = 1

Table S102.  Gene #11: 'PTEN MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 95 106
PTEN MUTATED 9 10 4
PTEN WILD-TYPE 68 85 102
'PTEN MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0182 (Fisher's exact test), Q value = 1

Table S103.  Gene #11: 'PTEN MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
PTEN MUTATED 5 8 0 0
PTEN WILD-TYPE 41 50 26 38

Figure S11.  Get High-res Image Gene #11: 'PTEN MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'PTEN MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.149 (Fisher's exact test), Q value = 1

Table S104.  Gene #11: 'PTEN MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 38 70 60
PTEN MUTATED 1 4 8
PTEN WILD-TYPE 37 66 52
'PTEN MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.168 (Fisher's exact test), Q value = 1

Table S105.  Gene #11: 'PTEN MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 78 102
PTEN MUTATED 12 6 5
PTEN WILD-TYPE 86 72 97
'PTEN MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0132 (Fisher's exact test), Q value = 1

Table S106.  Gene #11: 'PTEN MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 134 71
PTEN MUTATED 11 5 7
PTEN WILD-TYPE 62 129 64

Figure S12.  Get High-res Image Gene #11: 'PTEN MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'PTEN MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.812 (Fisher's exact test), Q value = 1

Table S107.  Gene #11: 'PTEN MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 117 85
PTEN MUTATED 7 9 7
PTEN WILD-TYPE 60 108 78
'PTEN MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.398 (Fisher's exact test), Q value = 1

Table S108.  Gene #11: 'PTEN MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 160 82
PTEN MUTATED 4 12 7
PTEN WILD-TYPE 23 148 75
'PTEN MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.812 (Fisher's exact test), Q value = 1

Table S109.  Gene #11: 'PTEN MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 82 110 77
PTEN MUTATED 6 9 8
PTEN WILD-TYPE 76 101 69
'PTEN MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.293 (Fisher's exact test), Q value = 1

Table S110.  Gene #11: 'PTEN MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 79 45 120
PTEN MUTATED 4 7 5 7
PTEN WILD-TYPE 21 72 40 113
'MRPS31 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.92 (Fisher's exact test), Q value = 1

Table S111.  Gene #12: 'MRPS31 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
MRPS31 MUTATED 7 3 3 6
MRPS31 WILD-TYPE 75 48 44 92
'MRPS31 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0927 (Fisher's exact test), Q value = 1

Table S112.  Gene #12: 'MRPS31 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 95 106
MRPS31 MUTATED 7 9 3
MRPS31 WILD-TYPE 70 86 103
'MRPS31 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.964 (Fisher's exact test), Q value = 1

Table S113.  Gene #12: 'MRPS31 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
MRPS31 MUTATED 2 4 1 2
MRPS31 WILD-TYPE 44 54 25 36
'MRPS31 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S114.  Gene #12: 'MRPS31 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 38 70 60
MRPS31 MUTATED 2 4 3
MRPS31 WILD-TYPE 36 66 57
'MRPS31 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.159 (Fisher's exact test), Q value = 1

Table S115.  Gene #12: 'MRPS31 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 78 102
MRPS31 MUTATED 5 3 11
MRPS31 WILD-TYPE 93 75 91
'MRPS31 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0146 (Fisher's exact test), Q value = 1

Table S116.  Gene #12: 'MRPS31 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 134 71
MRPS31 MUTATED 5 4 10
MRPS31 WILD-TYPE 68 130 61

Figure S13.  Get High-res Image Gene #12: 'MRPS31 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'MRPS31 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.56 (Fisher's exact test), Q value = 1

Table S117.  Gene #12: 'MRPS31 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 117 85
MRPS31 MUTATED 3 10 5
MRPS31 WILD-TYPE 64 107 80
'MRPS31 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.631 (Fisher's exact test), Q value = 1

Table S118.  Gene #12: 'MRPS31 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 160 82
MRPS31 MUTATED 1 13 4
MRPS31 WILD-TYPE 26 147 78
'MRPS31 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.209 (Fisher's exact test), Q value = 1

Table S119.  Gene #12: 'MRPS31 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 82 110 77
MRPS31 MUTATED 3 11 4
MRPS31 WILD-TYPE 79 99 73
'MRPS31 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.436 (Fisher's exact test), Q value = 1

Table S120.  Gene #12: 'MRPS31 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 79 45 120
MRPS31 MUTATED 0 4 4 10
MRPS31 WILD-TYPE 25 75 41 110
'PCDHGC5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.442 (Fisher's exact test), Q value = 1

Table S121.  Gene #13: 'PCDHGC5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
PCDHGC5 MUTATED 45 21 23 52
PCDHGC5 WILD-TYPE 37 30 24 46
'PCDHGC5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.193 (Fisher's exact test), Q value = 1

Table S122.  Gene #13: 'PCDHGC5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 95 106
PCDHGC5 MUTATED 33 54 54
PCDHGC5 WILD-TYPE 44 41 52
'PCDHGC5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.979 (Fisher's exact test), Q value = 1

Table S123.  Gene #13: 'PCDHGC5 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
PCDHGC5 MUTATED 25 32 15 20
PCDHGC5 WILD-TYPE 21 26 11 18
'PCDHGC5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.963 (Fisher's exact test), Q value = 1

Table S124.  Gene #13: 'PCDHGC5 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 38 70 60
PCDHGC5 MUTATED 20 39 33
PCDHGC5 WILD-TYPE 18 31 27
'PCDHGC5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.21 (Fisher's exact test), Q value = 1

Table S125.  Gene #13: 'PCDHGC5 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 78 102
PCDHGC5 MUTATED 48 46 47
PCDHGC5 WILD-TYPE 50 32 55
'PCDHGC5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.758 (Fisher's exact test), Q value = 1

Table S126.  Gene #13: 'PCDHGC5 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 134 71
PCDHGC5 MUTATED 35 71 35
PCDHGC5 WILD-TYPE 38 63 36
'PCDHGC5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.222 (Fisher's exact test), Q value = 1

Table S127.  Gene #13: 'PCDHGC5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 117 85
PCDHGC5 MUTATED 40 58 39
PCDHGC5 WILD-TYPE 27 59 46
'PCDHGC5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.475 (Fisher's exact test), Q value = 1

Table S128.  Gene #13: 'PCDHGC5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 160 82
PCDHGC5 MUTATED 16 83 38
PCDHGC5 WILD-TYPE 11 77 44
'PCDHGC5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.186 (Fisher's exact test), Q value = 1

Table S129.  Gene #13: 'PCDHGC5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 82 110 77
PCDHGC5 MUTATED 47 57 33
PCDHGC5 WILD-TYPE 35 53 44
'PCDHGC5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.262 (Fisher's exact test), Q value = 1

Table S130.  Gene #13: 'PCDHGC5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 79 45 120
PCDHGC5 MUTATED 15 38 18 66
PCDHGC5 WILD-TYPE 10 41 27 54
'BAGE MUTATION STATUS' versus 'CN_CNMF'

P value = 0.213 (Fisher's exact test), Q value = 1

Table S131.  Gene #14: 'BAGE MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
BAGE MUTATED 5 0 1 2
BAGE WILD-TYPE 77 51 46 96
'BAGE MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.481 (Fisher's exact test), Q value = 1

Table S132.  Gene #14: 'BAGE MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 95 106
BAGE MUTATED 1 2 5
BAGE WILD-TYPE 76 93 101
'BAGE MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.708 (Fisher's exact test), Q value = 1

Table S133.  Gene #14: 'BAGE MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
BAGE MUTATED 1 1 1 2
BAGE WILD-TYPE 45 57 25 36
'BAGE MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.726 (Fisher's exact test), Q value = 1

Table S134.  Gene #14: 'BAGE MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 38 70 60
BAGE MUTATED 2 2 1
BAGE WILD-TYPE 36 68 59
'BAGE MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.397 (Fisher's exact test), Q value = 1

Table S135.  Gene #14: 'BAGE MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 78 102
BAGE MUTATED 2 1 5
BAGE WILD-TYPE 96 77 97
'BAGE MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.666 (Fisher's exact test), Q value = 1

Table S136.  Gene #14: 'BAGE MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 134 71
BAGE MUTATED 2 3 3
BAGE WILD-TYPE 71 131 68
'BAGE MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.731 (Fisher's exact test), Q value = 1

Table S137.  Gene #14: 'BAGE MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 117 85
BAGE MUTATED 3 3 2
BAGE WILD-TYPE 64 114 83
'BAGE MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.646 (Fisher's exact test), Q value = 1

Table S138.  Gene #14: 'BAGE MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 160 82
BAGE MUTATED 1 4 3
BAGE WILD-TYPE 26 156 79
'BAGE MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.604 (Fisher's exact test), Q value = 1

Table S139.  Gene #14: 'BAGE MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 82 110 77
BAGE MUTATED 1 4 3
BAGE WILD-TYPE 81 106 74
'BAGE MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.651 (Fisher's exact test), Q value = 1

Table S140.  Gene #14: 'BAGE MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 79 45 120
BAGE MUTATED 1 3 0 4
BAGE WILD-TYPE 24 76 45 116
'DSG1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.79 (Fisher's exact test), Q value = 1

Table S141.  Gene #15: 'DSG1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
DSG1 MUTATED 12 7 7 19
DSG1 WILD-TYPE 70 44 40 79
'DSG1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S142.  Gene #15: 'DSG1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 95 106
DSG1 MUTATED 12 16 17
DSG1 WILD-TYPE 65 79 89
'DSG1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.102 (Fisher's exact test), Q value = 1

Table S143.  Gene #15: 'DSG1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
DSG1 MUTATED 12 5 4 8
DSG1 WILD-TYPE 34 53 22 30
'DSG1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.52 (Fisher's exact test), Q value = 1

Table S144.  Gene #15: 'DSG1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 38 70 60
DSG1 MUTATED 9 11 9
DSG1 WILD-TYPE 29 59 51
'DSG1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.458 (Fisher's exact test), Q value = 1

Table S145.  Gene #15: 'DSG1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 78 102
DSG1 MUTATED 17 15 13
DSG1 WILD-TYPE 81 63 89
'DSG1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.814 (Fisher's exact test), Q value = 1

Table S146.  Gene #15: 'DSG1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 134 71
DSG1 MUTATED 13 20 12
DSG1 WILD-TYPE 60 114 59
'DSG1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.767 (Fisher's exact test), Q value = 1

Table S147.  Gene #15: 'DSG1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 117 85
DSG1 MUTATED 9 18 15
DSG1 WILD-TYPE 58 99 70
'DSG1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.556 (Fisher's exact test), Q value = 1

Table S148.  Gene #15: 'DSG1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 160 82
DSG1 MUTATED 5 22 15
DSG1 WILD-TYPE 22 138 67
'DSG1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.43 (Fisher's exact test), Q value = 1

Table S149.  Gene #15: 'DSG1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 82 110 77
DSG1 MUTATED 16 14 12
DSG1 WILD-TYPE 66 96 65
'DSG1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.52 (Fisher's exact test), Q value = 1

Table S150.  Gene #15: 'DSG1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 79 45 120
DSG1 MUTATED 4 15 4 19
DSG1 WILD-TYPE 21 64 41 101
'PPP6C MUTATION STATUS' versus 'CN_CNMF'

P value = 0.644 (Fisher's exact test), Q value = 1

Table S151.  Gene #16: 'PPP6C MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
PPP6C MUTATED 6 2 5 7
PPP6C WILD-TYPE 76 49 42 91
'PPP6C MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.32 (Fisher's exact test), Q value = 1

Table S152.  Gene #16: 'PPP6C MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 95 106
PPP6C MUTATED 4 10 6
PPP6C WILD-TYPE 73 85 100
'PPP6C MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.487 (Fisher's exact test), Q value = 1

Table S153.  Gene #16: 'PPP6C MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
PPP6C MUTATED 5 2 2 2
PPP6C WILD-TYPE 41 56 24 36
'PPP6C MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.202 (Fisher's exact test), Q value = 1

Table S154.  Gene #16: 'PPP6C MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 38 70 60
PPP6C MUTATED 5 4 2
PPP6C WILD-TYPE 33 66 58
'PPP6C MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.628 (Fisher's exact test), Q value = 1

Table S155.  Gene #16: 'PPP6C MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 78 102
PPP6C MUTATED 9 5 6
PPP6C WILD-TYPE 89 73 96
'PPP6C MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.11 (Fisher's exact test), Q value = 1

Table S156.  Gene #16: 'PPP6C MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 134 71
PPP6C MUTATED 9 6 5
PPP6C WILD-TYPE 64 128 66
'PPP6C MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.506 (Fisher's exact test), Q value = 1

Table S157.  Gene #16: 'PPP6C MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 117 85
PPP6C MUTATED 7 7 6
PPP6C WILD-TYPE 60 110 79
'PPP6C MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.174 (Fisher's exact test), Q value = 1

Table S158.  Gene #16: 'PPP6C MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 160 82
PPP6C MUTATED 4 9 7
PPP6C WILD-TYPE 23 151 75
'PPP6C MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.225 (Fisher's exact test), Q value = 1

Table S159.  Gene #16: 'PPP6C MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 82 110 77
PPP6C MUTATED 9 5 6
PPP6C WILD-TYPE 73 105 71
'PPP6C MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.613 (Fisher's exact test), Q value = 1

Table S160.  Gene #16: 'PPP6C MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 79 45 120
PPP6C MUTATED 3 7 2 8
PPP6C WILD-TYPE 22 72 43 112
'RAC1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0181 (Fisher's exact test), Q value = 1

Table S161.  Gene #17: 'RAC1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
RAC1 MUTATED 10 1 0 9
RAC1 WILD-TYPE 72 50 47 89

Figure S14.  Get High-res Image Gene #17: 'RAC1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'RAC1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.538 (Fisher's exact test), Q value = 1

Table S162.  Gene #17: 'RAC1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 95 106
RAC1 MUTATED 4 6 10
RAC1 WILD-TYPE 73 89 96
'RAC1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.598 (Fisher's exact test), Q value = 1

Table S163.  Gene #17: 'RAC1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
RAC1 MUTATED 5 3 1 4
RAC1 WILD-TYPE 41 55 25 34
'RAC1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.427 (Fisher's exact test), Q value = 1

Table S164.  Gene #17: 'RAC1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 38 70 60
RAC1 MUTATED 2 4 7
RAC1 WILD-TYPE 36 66 53
'RAC1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.429 (Fisher's exact test), Q value = 1

Table S165.  Gene #17: 'RAC1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 78 102
RAC1 MUTATED 5 8 7
RAC1 WILD-TYPE 93 70 95
'RAC1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.233 (Fisher's exact test), Q value = 1

Table S166.  Gene #17: 'RAC1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 134 71
RAC1 MUTATED 7 11 2
RAC1 WILD-TYPE 66 123 69
'RAC1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.116 (Fisher's exact test), Q value = 1

Table S167.  Gene #17: 'RAC1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 117 85
RAC1 MUTATED 9 7 4
RAC1 WILD-TYPE 58 110 81
'RAC1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.324 (Fisher's exact test), Q value = 1

Table S168.  Gene #17: 'RAC1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 160 82
RAC1 MUTATED 2 9 9
RAC1 WILD-TYPE 25 151 73
'RAC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0551 (Fisher's exact test), Q value = 1

Table S169.  Gene #17: 'RAC1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 82 110 77
RAC1 MUTATED 11 6 3
RAC1 WILD-TYPE 71 104 74
'RAC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.294 (Fisher's exact test), Q value = 1

Table S170.  Gene #17: 'RAC1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 79 45 120
RAC1 MUTATED 2 9 1 8
RAC1 WILD-TYPE 23 70 44 112
'SERPINB3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.723 (Fisher's exact test), Q value = 1

Table S171.  Gene #18: 'SERPINB3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
SERPINB3 MUTATED 12 6 6 18
SERPINB3 WILD-TYPE 70 45 41 80
'SERPINB3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.933 (Fisher's exact test), Q value = 1

Table S172.  Gene #18: 'SERPINB3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 95 106
SERPINB3 MUTATED 11 14 17
SERPINB3 WILD-TYPE 66 81 89
'SERPINB3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.169 (Fisher's exact test), Q value = 1

Table S173.  Gene #18: 'SERPINB3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
SERPINB3 MUTATED 13 7 5 5
SERPINB3 WILD-TYPE 33 51 21 33
'SERPINB3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.188 (Fisher's exact test), Q value = 1

Table S174.  Gene #18: 'SERPINB3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 38 70 60
SERPINB3 MUTATED 10 13 7
SERPINB3 WILD-TYPE 28 57 53
'SERPINB3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.62 (Fisher's exact test), Q value = 1

Table S175.  Gene #18: 'SERPINB3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 78 102
SERPINB3 MUTATED 15 14 13
SERPINB3 WILD-TYPE 83 64 89
'SERPINB3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.177 (Fisher's exact test), Q value = 1

Table S176.  Gene #18: 'SERPINB3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 134 71
SERPINB3 MUTATED 12 24 6
SERPINB3 WILD-TYPE 61 110 65
'SERPINB3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.728 (Fisher's exact test), Q value = 1

Table S177.  Gene #18: 'SERPINB3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 117 85
SERPINB3 MUTATED 12 16 13
SERPINB3 WILD-TYPE 55 101 72
'SERPINB3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.641 (Fisher's exact test), Q value = 1

Table S178.  Gene #18: 'SERPINB3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 160 82
SERPINB3 MUTATED 5 22 14
SERPINB3 WILD-TYPE 22 138 68
'SERPINB3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.897 (Fisher's exact test), Q value = 1

Table S179.  Gene #18: 'SERPINB3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 82 110 77
SERPINB3 MUTATED 12 16 13
SERPINB3 WILD-TYPE 70 94 64
'SERPINB3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.965 (Fisher's exact test), Q value = 1

Table S180.  Gene #18: 'SERPINB3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 79 45 120
SERPINB3 MUTATED 3 13 7 18
SERPINB3 WILD-TYPE 22 66 38 102
'TSHB MUTATION STATUS' versus 'CN_CNMF'

P value = 0.708 (Fisher's exact test), Q value = 1

Table S181.  Gene #19: 'TSHB MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
TSHB MUTATED 1 0 1 3
TSHB WILD-TYPE 81 51 46 95
'TSHB MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.447 (Fisher's exact test), Q value = 1

Table S182.  Gene #19: 'TSHB MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 95 106
TSHB MUTATED 0 2 3
TSHB WILD-TYPE 77 93 103
'TSHB MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.45 (Fisher's exact test), Q value = 1

Table S183.  Gene #19: 'TSHB MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
TSHB MUTATED 1 0 1 1
TSHB WILD-TYPE 45 58 25 37
'TSHB MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.794 (Fisher's exact test), Q value = 1

Table S184.  Gene #19: 'TSHB MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 38 70 60
TSHB MUTATED 0 2 1
TSHB WILD-TYPE 38 68 59
'TSHB MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.268 (Fisher's exact test), Q value = 1

Table S185.  Gene #19: 'TSHB MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 78 102
TSHB MUTATED 0 2 3
TSHB WILD-TYPE 98 76 99
'TSHB MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.525 (Fisher's exact test), Q value = 1

Table S186.  Gene #19: 'TSHB MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 134 71
TSHB MUTATED 0 3 2
TSHB WILD-TYPE 73 131 69
'TSHB MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S187.  Gene #19: 'TSHB MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 117 85
TSHB MUTATED 1 2 2
TSHB WILD-TYPE 66 115 83
'TSHB MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S188.  Gene #19: 'TSHB MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 160 82
TSHB MUTATED 0 3 2
TSHB WILD-TYPE 27 157 80
'TSHB MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.864 (Fisher's exact test), Q value = 1

Table S189.  Gene #19: 'TSHB MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 82 110 77
TSHB MUTATED 1 2 2
TSHB WILD-TYPE 81 108 75
'TSHB MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.912 (Fisher's exact test), Q value = 1

Table S190.  Gene #19: 'TSHB MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 79 45 120
TSHB MUTATED 0 2 1 2
TSHB WILD-TYPE 25 77 44 118
'NDUFB9 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.523 (Fisher's exact test), Q value = 1

Table S191.  Gene #20: 'NDUFB9 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
NDUFB9 MUTATED 2 1 3 2
NDUFB9 WILD-TYPE 80 50 44 96
'NDUFB9 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.097 (Fisher's exact test), Q value = 1

Table S192.  Gene #20: 'NDUFB9 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 95 106
NDUFB9 MUTATED 5 2 1
NDUFB9 WILD-TYPE 72 93 105
'NDUFB9 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.127 (Fisher's exact test), Q value = 1

Table S193.  Gene #20: 'NDUFB9 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
NDUFB9 MUTATED 0 4 1 0
NDUFB9 WILD-TYPE 46 54 25 38
'NDUFB9 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.63 (Fisher's exact test), Q value = 1

Table S194.  Gene #20: 'NDUFB9 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 38 70 60
NDUFB9 MUTATED 0 3 2
NDUFB9 WILD-TYPE 38 67 58
'NDUFB9 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.052 (Fisher's exact test), Q value = 1

Table S195.  Gene #20: 'NDUFB9 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 78 102
NDUFB9 MUTATED 6 0 2
NDUFB9 WILD-TYPE 92 78 100
'NDUFB9 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0105 (Fisher's exact test), Q value = 1

Table S196.  Gene #20: 'NDUFB9 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 134 71
NDUFB9 MUTATED 6 2 0
NDUFB9 WILD-TYPE 67 132 71

Figure S15.  Get High-res Image Gene #20: 'NDUFB9 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'NDUFB9 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.273 (Fisher's exact test), Q value = 1

Table S197.  Gene #20: 'NDUFB9 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 117 85
NDUFB9 MUTATED 4 3 1
NDUFB9 WILD-TYPE 63 114 84
'NDUFB9 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.278 (Fisher's exact test), Q value = 1

Table S198.  Gene #20: 'NDUFB9 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 160 82
NDUFB9 MUTATED 2 4 2
NDUFB9 WILD-TYPE 25 156 80
'NDUFB9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.201 (Fisher's exact test), Q value = 1

Table S199.  Gene #20: 'NDUFB9 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 82 110 77
NDUFB9 MUTATED 5 2 1
NDUFB9 WILD-TYPE 77 108 76
'NDUFB9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.422 (Fisher's exact test), Q value = 1

Table S200.  Gene #20: 'NDUFB9 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 79 45 120
NDUFB9 MUTATED 2 2 1 3
NDUFB9 WILD-TYPE 23 77 44 117
'MS4A2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.541 (Fisher's exact test), Q value = 1

Table S201.  Gene #21: 'MS4A2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
MS4A2 MUTATED 3 1 2 7
MS4A2 WILD-TYPE 79 50 45 91
'MS4A2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.879 (Fisher's exact test), Q value = 1

Table S202.  Gene #21: 'MS4A2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 95 106
MS4A2 MUTATED 3 4 6
MS4A2 WILD-TYPE 74 91 100
'MS4A2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S203.  Gene #21: 'MS4A2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
MS4A2 MUTATED 3 3 1 2
MS4A2 WILD-TYPE 43 55 25 36
'MS4A2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S204.  Gene #21: 'MS4A2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 38 70 60
MS4A2 MUTATED 2 4 3
MS4A2 WILD-TYPE 36 66 57
'MS4A2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.822 (Fisher's exact test), Q value = 1

Table S205.  Gene #21: 'MS4A2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 78 102
MS4A2 MUTATED 4 3 6
MS4A2 WILD-TYPE 94 75 96
'MS4A2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.935 (Fisher's exact test), Q value = 1

Table S206.  Gene #21: 'MS4A2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 134 71
MS4A2 MUTATED 4 6 3
MS4A2 WILD-TYPE 69 128 68
'MS4A2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.719 (Fisher's exact test), Q value = 1

Table S207.  Gene #21: 'MS4A2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 117 85
MS4A2 MUTATED 2 6 5
MS4A2 WILD-TYPE 65 111 80
'MS4A2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.312 (Fisher's exact test), Q value = 1

Table S208.  Gene #21: 'MS4A2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 160 82
MS4A2 MUTATED 0 7 6
MS4A2 WILD-TYPE 27 153 76
'MS4A2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S209.  Gene #21: 'MS4A2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 82 110 77
MS4A2 MUTATED 4 5 4
MS4A2 WILD-TYPE 78 105 73
'MS4A2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.78 (Fisher's exact test), Q value = 1

Table S210.  Gene #21: 'MS4A2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 79 45 120
MS4A2 MUTATED 0 5 2 6
MS4A2 WILD-TYPE 25 74 43 114
'RPS27 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.684 (Fisher's exact test), Q value = 1

Table S211.  Gene #22: 'RPS27 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
RPS27 MUTATED 8 4 2 10
RPS27 WILD-TYPE 74 47 45 88
'RPS27 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.818 (Fisher's exact test), Q value = 1

Table S212.  Gene #22: 'RPS27 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 95 106
RPS27 MUTATED 8 8 8
RPS27 WILD-TYPE 69 87 98
'RPS27 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.699 (Fisher's exact test), Q value = 1

Table S213.  Gene #22: 'RPS27 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
RPS27 MUTATED 5 6 1 5
RPS27 WILD-TYPE 41 52 25 33
'RPS27 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.752 (Fisher's exact test), Q value = 1

Table S214.  Gene #22: 'RPS27 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 38 70 60
RPS27 MUTATED 5 6 6
RPS27 WILD-TYPE 33 64 54
'RPS27 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.571 (Fisher's exact test), Q value = 1

Table S215.  Gene #22: 'RPS27 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 78 102
RPS27 MUTATED 7 9 8
RPS27 WILD-TYPE 91 69 94
'RPS27 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S216.  Gene #22: 'RPS27 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 134 71
RPS27 MUTATED 6 12 6
RPS27 WILD-TYPE 67 122 65
'RPS27 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S217.  Gene #22: 'RPS27 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 117 85
RPS27 MUTATED 6 10 7
RPS27 WILD-TYPE 61 107 78
'RPS27 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.685 (Fisher's exact test), Q value = 1

Table S218.  Gene #22: 'RPS27 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 160 82
RPS27 MUTATED 1 14 8
RPS27 WILD-TYPE 26 146 74
'RPS27 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.759 (Fisher's exact test), Q value = 1

Table S219.  Gene #22: 'RPS27 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 82 110 77
RPS27 MUTATED 8 10 5
RPS27 WILD-TYPE 74 100 72
'RPS27 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.622 (Fisher's exact test), Q value = 1

Table S220.  Gene #22: 'RPS27 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 79 45 120
RPS27 MUTATED 1 8 2 12
RPS27 WILD-TYPE 24 71 43 108
'PPIAL4G MUTATION STATUS' versus 'CN_CNMF'

P value = 0.286 (Fisher's exact test), Q value = 1

Table S221.  Gene #23: 'PPIAL4G MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
PPIAL4G MUTATED 8 2 1 4
PPIAL4G WILD-TYPE 74 49 46 94
'PPIAL4G MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.897 (Fisher's exact test), Q value = 1

Table S222.  Gene #23: 'PPIAL4G MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 95 106
PPIAL4G MUTATED 5 5 5
PPIAL4G WILD-TYPE 72 90 101
'PPIAL4G MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.61 (Fisher's exact test), Q value = 1

Table S223.  Gene #23: 'PPIAL4G MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
PPIAL4G MUTATED 3 3 0 3
PPIAL4G WILD-TYPE 43 55 26 35
'PPIAL4G MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.558 (Fisher's exact test), Q value = 1

Table S224.  Gene #23: 'PPIAL4G MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 38 70 60
PPIAL4G MUTATED 3 4 2
PPIAL4G WILD-TYPE 35 66 58
'PPIAL4G MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.292 (Fisher's exact test), Q value = 1

Table S225.  Gene #23: 'PPIAL4G MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 78 102
PPIAL4G MUTATED 5 2 8
PPIAL4G WILD-TYPE 93 76 94
'PPIAL4G MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.456 (Fisher's exact test), Q value = 1

Table S226.  Gene #23: 'PPIAL4G MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 134 71
PPIAL4G MUTATED 5 5 5
PPIAL4G WILD-TYPE 68 129 66
'PPIAL4G MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S227.  Gene #23: 'PPIAL4G MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 117 85
PPIAL4G MUTATED 3 6 5
PPIAL4G WILD-TYPE 64 111 80
'PPIAL4G MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.548 (Fisher's exact test), Q value = 1

Table S228.  Gene #23: 'PPIAL4G MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 160 82
PPIAL4G MUTATED 0 9 5
PPIAL4G WILD-TYPE 27 151 77
'PPIAL4G MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.351 (Fisher's exact test), Q value = 1

Table S229.  Gene #23: 'PPIAL4G MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 82 110 77
PPIAL4G MUTATED 2 8 4
PPIAL4G WILD-TYPE 80 102 73
'PPIAL4G MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.558 (Fisher's exact test), Q value = 1

Table S230.  Gene #23: 'PPIAL4G MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 79 45 120
PPIAL4G MUTATED 0 5 1 8
PPIAL4G WILD-TYPE 25 74 44 112
'LUZP2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.771 (Fisher's exact test), Q value = 1

Table S231.  Gene #24: 'LUZP2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
LUZP2 MUTATED 10 4 5 8
LUZP2 WILD-TYPE 72 47 42 90
'LUZP2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.236 (Fisher's exact test), Q value = 1

Table S232.  Gene #24: 'LUZP2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 95 106
LUZP2 MUTATED 7 13 7
LUZP2 WILD-TYPE 70 82 99
'LUZP2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.95 (Fisher's exact test), Q value = 1

Table S233.  Gene #24: 'LUZP2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
LUZP2 MUTATED 4 6 3 3
LUZP2 WILD-TYPE 42 52 23 35
'LUZP2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.421 (Fisher's exact test), Q value = 1

Table S234.  Gene #24: 'LUZP2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 38 70 60
LUZP2 MUTATED 2 6 8
LUZP2 WILD-TYPE 36 64 52
'LUZP2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.23 (Fisher's exact test), Q value = 1

Table S235.  Gene #24: 'LUZP2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 78 102
LUZP2 MUTATED 8 5 14
LUZP2 WILD-TYPE 90 73 88
'LUZP2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.808 (Fisher's exact test), Q value = 1

Table S236.  Gene #24: 'LUZP2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 134 71
LUZP2 MUTATED 6 13 8
LUZP2 WILD-TYPE 67 121 63
'LUZP2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.192 (Fisher's exact test), Q value = 1

Table S237.  Gene #24: 'LUZP2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 117 85
LUZP2 MUTATED 3 12 11
LUZP2 WILD-TYPE 64 105 74
'LUZP2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.457 (Fisher's exact test), Q value = 1

Table S238.  Gene #24: 'LUZP2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 160 82
LUZP2 MUTATED 1 15 10
LUZP2 WILD-TYPE 26 145 72
'LUZP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.173 (Fisher's exact test), Q value = 1

Table S239.  Gene #24: 'LUZP2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 82 110 77
LUZP2 MUTATED 4 12 10
LUZP2 WILD-TYPE 78 98 67
'LUZP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.611 (Fisher's exact test), Q value = 1

Table S240.  Gene #24: 'LUZP2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 79 45 120
LUZP2 MUTATED 1 10 3 12
LUZP2 WILD-TYPE 24 69 42 108
'FAM113B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.544 (Fisher's exact test), Q value = 1

Table S241.  Gene #25: 'FAM113B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
FAM113B MUTATED 8 3 7 10
FAM113B WILD-TYPE 74 48 40 88
'FAM113B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.189 (Fisher's exact test), Q value = 1

Table S242.  Gene #25: 'FAM113B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 95 106
FAM113B MUTATED 7 6 15
FAM113B WILD-TYPE 70 89 91
'FAM113B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.183 (Fisher's exact test), Q value = 1

Table S243.  Gene #25: 'FAM113B MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
FAM113B MUTATED 2 10 2 3
FAM113B WILD-TYPE 44 48 24 35
'FAM113B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.464 (Fisher's exact test), Q value = 1

Table S244.  Gene #25: 'FAM113B MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 38 70 60
FAM113B MUTATED 2 7 8
FAM113B WILD-TYPE 36 63 52
'FAM113B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.435 (Fisher's exact test), Q value = 1

Table S245.  Gene #25: 'FAM113B MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 78 102
FAM113B MUTATED 7 10 11
FAM113B WILD-TYPE 91 68 91
'FAM113B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0677 (Fisher's exact test), Q value = 1

Table S246.  Gene #25: 'FAM113B MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 134 71
FAM113B MUTATED 6 19 3
FAM113B WILD-TYPE 67 115 68
'FAM113B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.151 (Fisher's exact test), Q value = 1

Table S247.  Gene #25: 'FAM113B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 117 85
FAM113B MUTATED 8 14 4
FAM113B WILD-TYPE 59 103 81
'FAM113B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.348 (Fisher's exact test), Q value = 1

Table S248.  Gene #25: 'FAM113B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 160 82
FAM113B MUTATED 1 19 6
FAM113B WILD-TYPE 26 141 76
'FAM113B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0363 (Fisher's exact test), Q value = 1

Table S249.  Gene #25: 'FAM113B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 82 110 77
FAM113B MUTATED 5 17 4
FAM113B WILD-TYPE 77 93 73

Figure S16.  Get High-res Image Gene #25: 'FAM113B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'FAM113B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.191 (Fisher's exact test), Q value = 1

Table S250.  Gene #25: 'FAM113B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 79 45 120
FAM113B MUTATED 1 6 2 17
FAM113B WILD-TYPE 24 73 43 103
'IDH1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0825 (Fisher's exact test), Q value = 1

Table S251.  Gene #26: 'IDH1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
IDH1 MUTATED 4 6 0 6
IDH1 WILD-TYPE 78 45 47 92
'IDH1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.166 (Fisher's exact test), Q value = 1

Table S252.  Gene #26: 'IDH1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 95 106
IDH1 MUTATED 2 9 5
IDH1 WILD-TYPE 75 86 101
'IDH1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.628 (Fisher's exact test), Q value = 1

Table S253.  Gene #26: 'IDH1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
IDH1 MUTATED 1 4 1 3
IDH1 WILD-TYPE 45 54 25 35
'IDH1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.827 (Fisher's exact test), Q value = 1

Table S254.  Gene #26: 'IDH1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 38 70 60
IDH1 MUTATED 1 4 4
IDH1 WILD-TYPE 37 66 56
'IDH1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.332 (Fisher's exact test), Q value = 1

Table S255.  Gene #26: 'IDH1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 78 102
IDH1 MUTATED 3 6 7
IDH1 WILD-TYPE 95 72 95
'IDH1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.192 (Fisher's exact test), Q value = 1

Table S256.  Gene #26: 'IDH1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 134 71
IDH1 MUTATED 2 7 7
IDH1 WILD-TYPE 71 127 64
'IDH1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.17 (Fisher's exact test), Q value = 1

Table S257.  Gene #26: 'IDH1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 117 85
IDH1 MUTATED 3 10 2
IDH1 WILD-TYPE 64 107 83
'IDH1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.171 (Fisher's exact test), Q value = 1

Table S258.  Gene #26: 'IDH1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 160 82
IDH1 MUTATED 3 10 2
IDH1 WILD-TYPE 24 150 80
'IDH1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.372 (Fisher's exact test), Q value = 1

Table S259.  Gene #26: 'IDH1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 82 110 77
IDH1 MUTATED 3 9 3
IDH1 WILD-TYPE 79 101 74
'IDH1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.162 (Fisher's exact test), Q value = 1

Table S260.  Gene #26: 'IDH1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 79 45 120
IDH1 MUTATED 3 2 1 9
IDH1 WILD-TYPE 22 77 44 111
'OR51S1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.365 (Fisher's exact test), Q value = 1

Table S261.  Gene #27: 'OR51S1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
OR51S1 MUTATED 5 7 5 13
OR51S1 WILD-TYPE 77 44 42 85
'OR51S1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.877 (Fisher's exact test), Q value = 1

Table S262.  Gene #27: 'OR51S1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 95 106
OR51S1 MUTATED 9 9 12
OR51S1 WILD-TYPE 68 86 94
'OR51S1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.491 (Fisher's exact test), Q value = 1

Table S263.  Gene #27: 'OR51S1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
OR51S1 MUTATED 3 9 2 5
OR51S1 WILD-TYPE 43 49 24 33
'OR51S1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.065 (Fisher's exact test), Q value = 1

Table S264.  Gene #27: 'OR51S1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 38 70 60
OR51S1 MUTATED 1 12 6
OR51S1 WILD-TYPE 37 58 54
'OR51S1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.789 (Fisher's exact test), Q value = 1

Table S265.  Gene #27: 'OR51S1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 78 102
OR51S1 MUTATED 10 10 10
OR51S1 WILD-TYPE 88 68 92
'OR51S1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.73 (Fisher's exact test), Q value = 1

Table S266.  Gene #27: 'OR51S1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 134 71
OR51S1 MUTATED 9 15 6
OR51S1 WILD-TYPE 64 119 65
'OR51S1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.407 (Fisher's exact test), Q value = 1

Table S267.  Gene #27: 'OR51S1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 117 85
OR51S1 MUTATED 5 16 8
OR51S1 WILD-TYPE 62 101 77
'OR51S1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.436 (Fisher's exact test), Q value = 1

Table S268.  Gene #27: 'OR51S1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 160 82
OR51S1 MUTATED 1 20 8
OR51S1 WILD-TYPE 26 140 74
'OR51S1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.438 (Fisher's exact test), Q value = 1

Table S269.  Gene #27: 'OR51S1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 82 110 77
OR51S1 MUTATED 8 15 6
OR51S1 WILD-TYPE 74 95 71
'OR51S1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0511 (Fisher's exact test), Q value = 1

Table S270.  Gene #27: 'OR51S1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 79 45 120
OR51S1 MUTATED 1 8 1 19
OR51S1 WILD-TYPE 24 71 44 101
'CYP4X1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.649 (Fisher's exact test), Q value = 1

Table S271.  Gene #28: 'CYP4X1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
CYP4X1 MUTATED 6 3 2 10
CYP4X1 WILD-TYPE 76 48 45 88
'CYP4X1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.584 (Fisher's exact test), Q value = 1

Table S272.  Gene #28: 'CYP4X1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 95 106
CYP4X1 MUTATED 4 7 10
CYP4X1 WILD-TYPE 73 88 96
'CYP4X1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.96 (Fisher's exact test), Q value = 1

Table S273.  Gene #28: 'CYP4X1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
CYP4X1 MUTATED 3 5 2 4
CYP4X1 WILD-TYPE 43 53 24 34
'CYP4X1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.225 (Fisher's exact test), Q value = 1

Table S274.  Gene #28: 'CYP4X1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 38 70 60
CYP4X1 MUTATED 5 3 6
CYP4X1 WILD-TYPE 33 67 54
'CYP4X1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.308 (Fisher's exact test), Q value = 1

Table S275.  Gene #28: 'CYP4X1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 78 102
CYP4X1 MUTATED 5 5 11
CYP4X1 WILD-TYPE 93 73 91
'CYP4X1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.557 (Fisher's exact test), Q value = 1

Table S276.  Gene #28: 'CYP4X1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 134 71
CYP4X1 MUTATED 6 8 7
CYP4X1 WILD-TYPE 67 126 64
'CYP4X1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.68 (Fisher's exact test), Q value = 1

Table S277.  Gene #28: 'CYP4X1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 117 85
CYP4X1 MUTATED 5 11 5
CYP4X1 WILD-TYPE 62 106 80
'CYP4X1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.719 (Fisher's exact test), Q value = 1

Table S278.  Gene #28: 'CYP4X1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 160 82
CYP4X1 MUTATED 3 12 6
CYP4X1 WILD-TYPE 24 148 76
'CYP4X1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.56 (Fisher's exact test), Q value = 1

Table S279.  Gene #28: 'CYP4X1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 82 110 77
CYP4X1 MUTATED 5 11 5
CYP4X1 WILD-TYPE 77 99 72
'CYP4X1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.682 (Fisher's exact test), Q value = 1

Table S280.  Gene #28: 'CYP4X1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 79 45 120
CYP4X1 MUTATED 3 6 2 10
CYP4X1 WILD-TYPE 22 73 43 110
'ARMC4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.719 (Fisher's exact test), Q value = 1

Table S281.  Gene #29: 'ARMC4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
ARMC4 MUTATED 19 9 7 19
ARMC4 WILD-TYPE 63 42 40 79
'ARMC4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.711 (Fisher's exact test), Q value = 1

Table S282.  Gene #29: 'ARMC4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 95 106
ARMC4 MUTATED 14 21 19
ARMC4 WILD-TYPE 63 74 87
'ARMC4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.1 (Fisher's exact test), Q value = 1

Table S283.  Gene #29: 'ARMC4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
ARMC4 MUTATED 8 9 2 12
ARMC4 WILD-TYPE 38 49 24 26
'ARMC4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.575 (Fisher's exact test), Q value = 1

Table S284.  Gene #29: 'ARMC4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 38 70 60
ARMC4 MUTATED 5 13 13
ARMC4 WILD-TYPE 33 57 47
'ARMC4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.168 (Fisher's exact test), Q value = 1

Table S285.  Gene #29: 'ARMC4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 78 102
ARMC4 MUTATED 14 20 20
ARMC4 WILD-TYPE 84 58 82
'ARMC4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.755 (Fisher's exact test), Q value = 1

Table S286.  Gene #29: 'ARMC4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 134 71
ARMC4 MUTATED 12 28 14
ARMC4 WILD-TYPE 61 106 57
'ARMC4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.598 (Fisher's exact test), Q value = 1

Table S287.  Gene #29: 'ARMC4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 117 85
ARMC4 MUTATED 12 26 14
ARMC4 WILD-TYPE 55 91 71
'ARMC4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.619 (Fisher's exact test), Q value = 1

Table S288.  Gene #29: 'ARMC4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 160 82
ARMC4 MUTATED 6 33 13
ARMC4 WILD-TYPE 21 127 69
'ARMC4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.333 (Fisher's exact test), Q value = 1

Table S289.  Gene #29: 'ARMC4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 82 110 77
ARMC4 MUTATED 14 26 12
ARMC4 WILD-TYPE 68 84 65
'ARMC4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.161 (Fisher's exact test), Q value = 1

Table S290.  Gene #29: 'ARMC4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 79 45 120
ARMC4 MUTATED 5 12 5 30
ARMC4 WILD-TYPE 20 67 40 90
'TUBAL3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.365 (Fisher's exact test), Q value = 1

Table S291.  Gene #30: 'TUBAL3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
TUBAL3 MUTATED 5 1 0 4
TUBAL3 WILD-TYPE 77 50 47 94
'TUBAL3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.781 (Fisher's exact test), Q value = 1

Table S292.  Gene #30: 'TUBAL3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 95 106
TUBAL3 MUTATED 2 3 5
TUBAL3 WILD-TYPE 75 92 101
'TUBAL3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.481 (Fisher's exact test), Q value = 1

Table S293.  Gene #30: 'TUBAL3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
TUBAL3 MUTATED 3 1 1 3
TUBAL3 WILD-TYPE 43 57 25 35
'TUBAL3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.167 (Fisher's exact test), Q value = 1

Table S294.  Gene #30: 'TUBAL3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 38 70 60
TUBAL3 MUTATED 3 1 4
TUBAL3 WILD-TYPE 35 69 56
'TUBAL3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.72 (Fisher's exact test), Q value = 1

Table S295.  Gene #30: 'TUBAL3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 78 102
TUBAL3 MUTATED 3 4 3
TUBAL3 WILD-TYPE 95 74 99
'TUBAL3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.842 (Fisher's exact test), Q value = 1

Table S296.  Gene #30: 'TUBAL3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 134 71
TUBAL3 MUTATED 2 6 2
TUBAL3 WILD-TYPE 71 128 69
'TUBAL3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.711 (Fisher's exact test), Q value = 1

Table S297.  Gene #30: 'TUBAL3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 117 85
TUBAL3 MUTATED 3 3 4
TUBAL3 WILD-TYPE 64 114 81
'TUBAL3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.626 (Fisher's exact test), Q value = 1

Table S298.  Gene #30: 'TUBAL3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 160 82
TUBAL3 MUTATED 0 6 4
TUBAL3 WILD-TYPE 27 154 78
'TUBAL3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.786 (Fisher's exact test), Q value = 1

Table S299.  Gene #30: 'TUBAL3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 82 110 77
TUBAL3 MUTATED 4 4 2
TUBAL3 WILD-TYPE 78 106 75
'TUBAL3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.751 (Fisher's exact test), Q value = 1

Table S300.  Gene #30: 'TUBAL3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 79 45 120
TUBAL3 MUTATED 0 4 2 4
TUBAL3 WILD-TYPE 25 75 43 116
'AOAH MUTATION STATUS' versus 'CN_CNMF'

P value = 0.959 (Fisher's exact test), Q value = 1

Table S301.  Gene #31: 'AOAH MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
AOAH MUTATED 9 5 4 9
AOAH WILD-TYPE 73 46 43 89
'AOAH MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.606 (Fisher's exact test), Q value = 1

Table S302.  Gene #31: 'AOAH MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 95 106
AOAH MUTATED 9 7 11
AOAH WILD-TYPE 68 88 95
'AOAH MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.417 (Fisher's exact test), Q value = 1

Table S303.  Gene #31: 'AOAH MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
AOAH MUTATED 3 6 1 6
AOAH WILD-TYPE 43 52 25 32
'AOAH MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.659 (Fisher's exact test), Q value = 1

Table S304.  Gene #31: 'AOAH MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 38 70 60
AOAH MUTATED 4 5 7
AOAH WILD-TYPE 34 65 53
'AOAH MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.28 (Fisher's exact test), Q value = 1

Table S305.  Gene #31: 'AOAH MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 78 102
AOAH MUTATED 6 8 13
AOAH WILD-TYPE 92 70 89
'AOAH MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.195 (Fisher's exact test), Q value = 1

Table S306.  Gene #31: 'AOAH MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 134 71
AOAH MUTATED 6 10 11
AOAH WILD-TYPE 67 124 60
'AOAH MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.827 (Fisher's exact test), Q value = 1

Table S307.  Gene #31: 'AOAH MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 117 85
AOAH MUTATED 6 13 7
AOAH WILD-TYPE 61 104 78
'AOAH MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.204 (Fisher's exact test), Q value = 1

Table S308.  Gene #31: 'AOAH MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 160 82
AOAH MUTATED 1 20 5
AOAH WILD-TYPE 26 140 77
'AOAH MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.391 (Fisher's exact test), Q value = 1

Table S309.  Gene #31: 'AOAH MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 82 110 77
AOAH MUTATED 6 14 6
AOAH WILD-TYPE 76 96 71
'AOAH MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.411 (Fisher's exact test), Q value = 1

Table S310.  Gene #31: 'AOAH MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 79 45 120
AOAH MUTATED 1 6 3 16
AOAH WILD-TYPE 24 73 42 104
'NMNAT3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.666 (Fisher's exact test), Q value = 1

Table S311.  Gene #32: 'NMNAT3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
NMNAT3 MUTATED 5 1 2 3
NMNAT3 WILD-TYPE 77 50 45 95
'NMNAT3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.113 (Fisher's exact test), Q value = 1

Table S312.  Gene #32: 'NMNAT3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 95 106
NMNAT3 MUTATED 1 7 3
NMNAT3 WILD-TYPE 76 88 103
'NMNAT3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.8 (Fisher's exact test), Q value = 1

Table S313.  Gene #32: 'NMNAT3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
NMNAT3 MUTATED 2 2 0 2
NMNAT3 WILD-TYPE 44 56 26 36
'NMNAT3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.656 (Fisher's exact test), Q value = 1

Table S314.  Gene #32: 'NMNAT3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 38 70 60
NMNAT3 MUTATED 2 3 1
NMNAT3 WILD-TYPE 36 67 59
'NMNAT3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.266 (Fisher's exact test), Q value = 1

Table S315.  Gene #32: 'NMNAT3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 78 102
NMNAT3 MUTATED 4 1 6
NMNAT3 WILD-TYPE 94 77 96
'NMNAT3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S316.  Gene #32: 'NMNAT3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 134 71
NMNAT3 MUTATED 3 5 3
NMNAT3 WILD-TYPE 70 129 68
'NMNAT3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.858 (Fisher's exact test), Q value = 1

Table S317.  Gene #32: 'NMNAT3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 117 85
NMNAT3 MUTATED 3 4 4
NMNAT3 WILD-TYPE 64 113 81
'NMNAT3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.192 (Fisher's exact test), Q value = 1

Table S318.  Gene #32: 'NMNAT3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 160 82
NMNAT3 MUTATED 2 4 5
NMNAT3 WILD-TYPE 25 156 77
'NMNAT3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.859 (Fisher's exact test), Q value = 1

Table S319.  Gene #32: 'NMNAT3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 82 110 77
NMNAT3 MUTATED 3 4 4
NMNAT3 WILD-TYPE 79 106 73
'NMNAT3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.178 (Fisher's exact test), Q value = 1

Table S320.  Gene #32: 'NMNAT3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 79 45 120
NMNAT3 MUTATED 2 5 0 4
NMNAT3 WILD-TYPE 23 74 45 116
'THEMIS MUTATION STATUS' versus 'CN_CNMF'

P value = 0.466 (Fisher's exact test), Q value = 1

Table S321.  Gene #33: 'THEMIS MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
THEMIS MUTATED 12 3 6 13
THEMIS WILD-TYPE 70 48 41 85
'THEMIS MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.118 (Fisher's exact test), Q value = 1

Table S322.  Gene #33: 'THEMIS MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 95 106
THEMIS MUTATED 8 17 9
THEMIS WILD-TYPE 69 78 97
'THEMIS MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.525 (Fisher's exact test), Q value = 1

Table S323.  Gene #33: 'THEMIS MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
THEMIS MUTATED 6 7 1 6
THEMIS WILD-TYPE 40 51 25 32
'THEMIS MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.947 (Fisher's exact test), Q value = 1

Table S324.  Gene #33: 'THEMIS MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 38 70 60
THEMIS MUTATED 5 8 7
THEMIS WILD-TYPE 33 62 53
'THEMIS MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.838 (Fisher's exact test), Q value = 1

Table S325.  Gene #33: 'THEMIS MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 78 102
THEMIS MUTATED 11 11 12
THEMIS WILD-TYPE 87 67 90
'THEMIS MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.457 (Fisher's exact test), Q value = 1

Table S326.  Gene #33: 'THEMIS MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 134 71
THEMIS MUTATED 6 19 9
THEMIS WILD-TYPE 67 115 62
'THEMIS MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.214 (Fisher's exact test), Q value = 1

Table S327.  Gene #33: 'THEMIS MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 117 85
THEMIS MUTATED 4 17 10
THEMIS WILD-TYPE 63 100 75
'THEMIS MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.417 (Fisher's exact test), Q value = 1

Table S328.  Gene #33: 'THEMIS MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 160 82
THEMIS MUTATED 1 19 11
THEMIS WILD-TYPE 26 141 71
'THEMIS MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.688 (Fisher's exact test), Q value = 1

Table S329.  Gene #33: 'THEMIS MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 82 110 77
THEMIS MUTATED 8 15 8
THEMIS WILD-TYPE 74 95 69
'THEMIS MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.186 (Fisher's exact test), Q value = 1

Table S330.  Gene #33: 'THEMIS MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 79 45 120
THEMIS MUTATED 1 10 2 18
THEMIS WILD-TYPE 24 69 43 102
'CYP4Z1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.844 (Fisher's exact test), Q value = 1

Table S331.  Gene #34: 'CYP4Z1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
CYP4Z1 MUTATED 9 6 4 8
CYP4Z1 WILD-TYPE 73 45 43 90
'CYP4Z1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.172 (Fisher's exact test), Q value = 1

Table S332.  Gene #34: 'CYP4Z1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 95 106
CYP4Z1 MUTATED 10 11 6
CYP4Z1 WILD-TYPE 67 84 100
'CYP4Z1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0304 (Fisher's exact test), Q value = 1

Table S333.  Gene #34: 'CYP4Z1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
CYP4Z1 MUTATED 1 10 1 6
CYP4Z1 WILD-TYPE 45 48 25 32

Figure S17.  Get High-res Image Gene #34: 'CYP4Z1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'CYP4Z1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.239 (Fisher's exact test), Q value = 1

Table S334.  Gene #34: 'CYP4Z1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 38 70 60
CYP4Z1 MUTATED 3 11 4
CYP4Z1 WILD-TYPE 35 59 56
'CYP4Z1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.594 (Fisher's exact test), Q value = 1

Table S335.  Gene #34: 'CYP4Z1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 78 102
CYP4Z1 MUTATED 12 6 9
CYP4Z1 WILD-TYPE 86 72 93
'CYP4Z1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.169 (Fisher's exact test), Q value = 1

Table S336.  Gene #34: 'CYP4Z1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 134 71
CYP4Z1 MUTATED 9 15 3
CYP4Z1 WILD-TYPE 64 119 68
'CYP4Z1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.635 (Fisher's exact test), Q value = 1

Table S337.  Gene #34: 'CYP4Z1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 117 85
CYP4Z1 MUTATED 6 13 6
CYP4Z1 WILD-TYPE 61 104 79
'CYP4Z1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.441 (Fisher's exact test), Q value = 1

Table S338.  Gene #34: 'CYP4Z1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 160 82
CYP4Z1 MUTATED 3 17 5
CYP4Z1 WILD-TYPE 24 143 77
'CYP4Z1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.725 (Fisher's exact test), Q value = 1

Table S339.  Gene #34: 'CYP4Z1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 82 110 77
CYP4Z1 MUTATED 6 12 7
CYP4Z1 WILD-TYPE 76 98 70
'CYP4Z1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.67 (Fisher's exact test), Q value = 1

Table S340.  Gene #34: 'CYP4Z1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 79 45 120
CYP4Z1 MUTATED 3 5 4 13
CYP4Z1 WILD-TYPE 22 74 41 107
'CTAGE6P MUTATION STATUS' versus 'CN_CNMF'

P value = 0.797 (Fisher's exact test), Q value = 1

Table S341.  Gene #35: 'CTAGE6P MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
CTAGE6P MUTATED 1 1 1 4
CTAGE6P WILD-TYPE 81 50 46 94
'CTAGE6P MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S342.  Gene #35: 'CTAGE6P MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 95 106
CTAGE6P MUTATED 2 2 3
CTAGE6P WILD-TYPE 75 93 103
'CTAGE6P MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0142 (Fisher's exact test), Q value = 1

Table S343.  Gene #35: 'CTAGE6P MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
CTAGE6P MUTATED 0 0 0 3
CTAGE6P WILD-TYPE 46 58 26 35

Figure S18.  Get High-res Image Gene #35: 'CTAGE6P MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'CTAGE6P MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.33 (Fisher's exact test), Q value = 1

Table S344.  Gene #35: 'CTAGE6P MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 38 70 60
CTAGE6P MUTATED 1 0 2
CTAGE6P WILD-TYPE 37 70 58
'CTAGE6P MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.299 (Fisher's exact test), Q value = 1

Table S345.  Gene #35: 'CTAGE6P MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 78 102
CTAGE6P MUTATED 1 4 2
CTAGE6P WILD-TYPE 97 74 100
'CTAGE6P MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.79 (Fisher's exact test), Q value = 1

Table S346.  Gene #35: 'CTAGE6P MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 134 71
CTAGE6P MUTATED 1 4 2
CTAGE6P WILD-TYPE 72 130 69
'CTAGE6P MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.669 (Fisher's exact test), Q value = 1

Table S347.  Gene #35: 'CTAGE6P MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 117 85
CTAGE6P MUTATED 1 2 3
CTAGE6P WILD-TYPE 66 115 82
'CTAGE6P MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.271 (Fisher's exact test), Q value = 1

Table S348.  Gene #35: 'CTAGE6P MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 160 82
CTAGE6P MUTATED 0 2 4
CTAGE6P WILD-TYPE 27 158 78
'CTAGE6P MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S349.  Gene #35: 'CTAGE6P MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 82 110 77
CTAGE6P MUTATED 2 2 2
CTAGE6P WILD-TYPE 80 108 75
'CTAGE6P MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.366 (Fisher's exact test), Q value = 1

Table S350.  Gene #35: 'CTAGE6P MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 79 45 120
CTAGE6P MUTATED 0 4 0 2
CTAGE6P WILD-TYPE 25 75 45 118
'TC2N MUTATION STATUS' versus 'CN_CNMF'

P value = 0.676 (Fisher's exact test), Q value = 1

Table S351.  Gene #36: 'TC2N MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
TC2N MUTATED 8 2 3 7
TC2N WILD-TYPE 74 49 44 91
'TC2N MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.397 (Fisher's exact test), Q value = 1

Table S352.  Gene #36: 'TC2N MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 95 106
TC2N MUTATED 6 9 5
TC2N WILD-TYPE 71 86 101
'TC2N MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.612 (Fisher's exact test), Q value = 1

Table S353.  Gene #36: 'TC2N MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
TC2N MUTATED 2 5 1 4
TC2N WILD-TYPE 44 53 25 34
'TC2N MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.51 (Fisher's exact test), Q value = 1

Table S354.  Gene #36: 'TC2N MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 38 70 60
TC2N MUTATED 1 6 5
TC2N WILD-TYPE 37 64 55
'TC2N MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.634 (Fisher's exact test), Q value = 1

Table S355.  Gene #36: 'TC2N MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 78 102
TC2N MUTATED 7 4 9
TC2N WILD-TYPE 91 74 93
'TC2N MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.913 (Fisher's exact test), Q value = 1

Table S356.  Gene #36: 'TC2N MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 134 71
TC2N MUTATED 5 9 6
TC2N WILD-TYPE 68 125 65
'TC2N MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.479 (Fisher's exact test), Q value = 1

Table S357.  Gene #36: 'TC2N MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 117 85
TC2N MUTATED 6 10 4
TC2N WILD-TYPE 61 107 81
'TC2N MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.883 (Fisher's exact test), Q value = 1

Table S358.  Gene #36: 'TC2N MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 160 82
TC2N MUTATED 2 13 5
TC2N WILD-TYPE 25 147 77
'TC2N MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.439 (Fisher's exact test), Q value = 1

Table S359.  Gene #36: 'TC2N MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 82 110 77
TC2N MUTATED 5 11 4
TC2N WILD-TYPE 77 99 73
'TC2N MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.394 (Fisher's exact test), Q value = 1

Table S360.  Gene #36: 'TC2N MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 79 45 120
TC2N MUTATED 2 5 1 12
TC2N WILD-TYPE 23 74 44 108
'MPP7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.762 (Fisher's exact test), Q value = 1

Table S361.  Gene #37: 'MPP7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
MPP7 MUTATED 9 6 3 12
MPP7 WILD-TYPE 73 45 44 86
'MPP7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.318 (Fisher's exact test), Q value = 1

Table S362.  Gene #37: 'MPP7 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 95 106
MPP7 MUTATED 6 14 10
MPP7 WILD-TYPE 71 81 96
'MPP7 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.395 (Fisher's exact test), Q value = 1

Table S363.  Gene #37: 'MPP7 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
MPP7 MUTATED 5 10 1 4
MPP7 WILD-TYPE 41 48 25 34
'MPP7 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.485 (Fisher's exact test), Q value = 1

Table S364.  Gene #37: 'MPP7 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 38 70 60
MPP7 MUTATED 5 6 9
MPP7 WILD-TYPE 33 64 51
'MPP7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.291 (Fisher's exact test), Q value = 1

Table S365.  Gene #37: 'MPP7 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 78 102
MPP7 MUTATED 8 7 15
MPP7 WILD-TYPE 90 71 87
'MPP7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.332 (Fisher's exact test), Q value = 1

Table S366.  Gene #37: 'MPP7 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 134 71
MPP7 MUTATED 6 13 11
MPP7 WILD-TYPE 67 121 60
'MPP7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.657 (Fisher's exact test), Q value = 1

Table S367.  Gene #37: 'MPP7 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 117 85
MPP7 MUTATED 8 14 7
MPP7 WILD-TYPE 59 103 78
'MPP7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.804 (Fisher's exact test), Q value = 1

Table S368.  Gene #37: 'MPP7 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 160 82
MPP7 MUTATED 3 16 10
MPP7 WILD-TYPE 24 144 72
'MPP7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.899 (Fisher's exact test), Q value = 1

Table S369.  Gene #37: 'MPP7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 82 110 77
MPP7 MUTATED 8 13 8
MPP7 WILD-TYPE 74 97 69
'MPP7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.49 (Fisher's exact test), Q value = 1

Table S370.  Gene #37: 'MPP7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 79 45 120
MPP7 MUTATED 3 10 2 14
MPP7 WILD-TYPE 22 69 43 106
'CAPZA3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.173 (Fisher's exact test), Q value = 1

Table S371.  Gene #38: 'CAPZA3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
CAPZA3 MUTATED 8 1 6 11
CAPZA3 WILD-TYPE 74 50 41 87
'CAPZA3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.701 (Fisher's exact test), Q value = 1

Table S372.  Gene #38: 'CAPZA3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 95 106
CAPZA3 MUTATED 8 10 8
CAPZA3 WILD-TYPE 69 85 98
'CAPZA3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.749 (Fisher's exact test), Q value = 1

Table S373.  Gene #38: 'CAPZA3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
CAPZA3 MUTATED 2 4 2 4
CAPZA3 WILD-TYPE 44 54 24 34
'CAPZA3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.551 (Fisher's exact test), Q value = 1

Table S374.  Gene #38: 'CAPZA3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 38 70 60
CAPZA3 MUTATED 2 7 3
CAPZA3 WILD-TYPE 36 63 57
'CAPZA3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.804 (Fisher's exact test), Q value = 1

Table S375.  Gene #38: 'CAPZA3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 78 102
CAPZA3 MUTATED 8 7 11
CAPZA3 WILD-TYPE 90 71 91
'CAPZA3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S376.  Gene #38: 'CAPZA3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 134 71
CAPZA3 MUTATED 7 13 6
CAPZA3 WILD-TYPE 66 121 65
'CAPZA3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S377.  Gene #38: 'CAPZA3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 117 85
CAPZA3 MUTATED 6 10 8
CAPZA3 WILD-TYPE 61 107 77
'CAPZA3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.519 (Fisher's exact test), Q value = 1

Table S378.  Gene #38: 'CAPZA3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 160 82
CAPZA3 MUTATED 3 16 5
CAPZA3 WILD-TYPE 24 144 77
'CAPZA3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.738 (Fisher's exact test), Q value = 1

Table S379.  Gene #38: 'CAPZA3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 82 110 77
CAPZA3 MUTATED 9 9 6
CAPZA3 WILD-TYPE 73 101 71
'CAPZA3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.713 (Fisher's exact test), Q value = 1

Table S380.  Gene #38: 'CAPZA3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 79 45 120
CAPZA3 MUTATED 3 5 4 12
CAPZA3 WILD-TYPE 22 74 41 108
'C1QTNF9 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.452 (Fisher's exact test), Q value = 1

Table S381.  Gene #39: 'C1QTNF9 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
C1QTNF9 MUTATED 5 5 1 5
C1QTNF9 WILD-TYPE 77 46 46 93
'C1QTNF9 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.557 (Fisher's exact test), Q value = 1

Table S382.  Gene #39: 'C1QTNF9 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 95 106
C1QTNF9 MUTATED 3 5 8
C1QTNF9 WILD-TYPE 74 90 98
'C1QTNF9 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.649 (Fisher's exact test), Q value = 1

Table S383.  Gene #39: 'C1QTNF9 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
C1QTNF9 MUTATED 2 5 2 1
C1QTNF9 WILD-TYPE 44 53 24 37
'C1QTNF9 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.768 (Fisher's exact test), Q value = 1

Table S384.  Gene #39: 'C1QTNF9 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 38 70 60
C1QTNF9 MUTATED 3 3 4
C1QTNF9 WILD-TYPE 35 67 56
'C1QTNF9 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S385.  Gene #39: 'C1QTNF9 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 78 102
C1QTNF9 MUTATED 6 4 6
C1QTNF9 WILD-TYPE 92 74 96
'C1QTNF9 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.632 (Fisher's exact test), Q value = 1

Table S386.  Gene #39: 'C1QTNF9 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 134 71
C1QTNF9 MUTATED 3 10 3
C1QTNF9 WILD-TYPE 70 124 68
'C1QTNF9 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.182 (Fisher's exact test), Q value = 1

Table S387.  Gene #39: 'C1QTNF9 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 117 85
C1QTNF9 MUTATED 3 4 8
C1QTNF9 WILD-TYPE 64 113 77
'C1QTNF9 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.117 (Fisher's exact test), Q value = 1

Table S388.  Gene #39: 'C1QTNF9 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 160 82
C1QTNF9 MUTATED 0 7 8
C1QTNF9 WILD-TYPE 27 153 74
'C1QTNF9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.454 (Fisher's exact test), Q value = 1

Table S389.  Gene #39: 'C1QTNF9 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 82 110 77
C1QTNF9 MUTATED 5 4 6
C1QTNF9 WILD-TYPE 77 106 71
'C1QTNF9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.447 (Fisher's exact test), Q value = 1

Table S390.  Gene #39: 'C1QTNF9 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 79 45 120
C1QTNF9 MUTATED 0 7 2 6
C1QTNF9 WILD-TYPE 25 72 43 114
'ZNF99 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.197 (Fisher's exact test), Q value = 1

Table S391.  Gene #40: 'ZNF99 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
ZNF99 MUTATED 15 3 5 15
ZNF99 WILD-TYPE 67 48 42 83
'ZNF99 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.653 (Fisher's exact test), Q value = 1

Table S392.  Gene #40: 'ZNF99 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 95 106
ZNF99 MUTATED 13 12 13
ZNF99 WILD-TYPE 64 83 93
'ZNF99 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.795 (Fisher's exact test), Q value = 1

Table S393.  Gene #40: 'ZNF99 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
ZNF99 MUTATED 7 6 4 6
ZNF99 WILD-TYPE 39 52 22 32
'ZNF99 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.297 (Fisher's exact test), Q value = 1

Table S394.  Gene #40: 'ZNF99 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 38 70 60
ZNF99 MUTATED 6 12 5
ZNF99 WILD-TYPE 32 58 55
'ZNF99 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.331 (Fisher's exact test), Q value = 1

Table S395.  Gene #40: 'ZNF99 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 78 102
ZNF99 MUTATED 12 8 18
ZNF99 WILD-TYPE 86 70 84
'ZNF99 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0761 (Fisher's exact test), Q value = 1

Table S396.  Gene #40: 'ZNF99 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 134 71
ZNF99 MUTATED 13 12 13
ZNF99 WILD-TYPE 60 122 58
'ZNF99 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.526 (Fisher's exact test), Q value = 1

Table S397.  Gene #40: 'ZNF99 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 117 85
ZNF99 MUTATED 12 15 10
ZNF99 WILD-TYPE 55 102 75
'ZNF99 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.514 (Fisher's exact test), Q value = 1

Table S398.  Gene #40: 'ZNF99 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 160 82
ZNF99 MUTATED 2 25 10
ZNF99 WILD-TYPE 25 135 72
'ZNF99 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.617 (Fisher's exact test), Q value = 1

Table S399.  Gene #40: 'ZNF99 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 82 110 77
ZNF99 MUTATED 10 18 9
ZNF99 WILD-TYPE 72 92 68
'ZNF99 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0453 (Fisher's exact test), Q value = 1

Table S400.  Gene #40: 'ZNF99 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 79 45 120
ZNF99 MUTATED 2 9 2 24
ZNF99 WILD-TYPE 23 70 43 96

Figure S19.  Get High-res Image Gene #40: 'ZNF99 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'GPR141 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.197 (Fisher's exact test), Q value = 1

Table S401.  Gene #41: 'GPR141 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
GPR141 MUTATED 3 2 1 10
GPR141 WILD-TYPE 79 49 46 88
'GPR141 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.151 (Fisher's exact test), Q value = 1

Table S402.  Gene #41: 'GPR141 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 95 106
GPR141 MUTATED 6 2 8
GPR141 WILD-TYPE 71 93 98
'GPR141 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0325 (Fisher's exact test), Q value = 1

Table S403.  Gene #41: 'GPR141 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
GPR141 MUTATED 7 2 0 1
GPR141 WILD-TYPE 39 56 26 37

Figure S20.  Get High-res Image Gene #41: 'GPR141 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'GPR141 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0599 (Fisher's exact test), Q value = 1

Table S404.  Gene #41: 'GPR141 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 38 70 60
GPR141 MUTATED 5 4 1
GPR141 WILD-TYPE 33 66 59
'GPR141 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.699 (Fisher's exact test), Q value = 1

Table S405.  Gene #41: 'GPR141 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 78 102
GPR141 MUTATED 5 6 5
GPR141 WILD-TYPE 93 72 97
'GPR141 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.314 (Fisher's exact test), Q value = 1

Table S406.  Gene #41: 'GPR141 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 134 71
GPR141 MUTATED 5 5 6
GPR141 WILD-TYPE 68 129 65
'GPR141 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.107 (Fisher's exact test), Q value = 1

Table S407.  Gene #41: 'GPR141 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 117 85
GPR141 MUTATED 2 5 9
GPR141 WILD-TYPE 65 112 76
'GPR141 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.541 (Fisher's exact test), Q value = 1

Table S408.  Gene #41: 'GPR141 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 160 82
GPR141 MUTATED 1 8 7
GPR141 WILD-TYPE 26 152 75
'GPR141 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0644 (Fisher's exact test), Q value = 1

Table S409.  Gene #41: 'GPR141 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 82 110 77
GPR141 MUTATED 3 4 9
GPR141 WILD-TYPE 79 106 68
'GPR141 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.804 (Fisher's exact test), Q value = 1

Table S410.  Gene #41: 'GPR141 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 79 45 120
GPR141 MUTATED 1 5 4 6
GPR141 WILD-TYPE 24 74 41 114
'ITGA4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.381 (Fisher's exact test), Q value = 1

Table S411.  Gene #42: 'ITGA4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
ITGA4 MUTATED 7 6 6 17
ITGA4 WILD-TYPE 75 45 41 81
'ITGA4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0804 (Fisher's exact test), Q value = 1

Table S412.  Gene #42: 'ITGA4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 95 106
ITGA4 MUTATED 5 17 14
ITGA4 WILD-TYPE 72 78 92
'ITGA4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.64 (Fisher's exact test), Q value = 1

Table S413.  Gene #42: 'ITGA4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
ITGA4 MUTATED 8 6 2 5
ITGA4 WILD-TYPE 38 52 24 33
'ITGA4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.784 (Fisher's exact test), Q value = 1

Table S414.  Gene #42: 'ITGA4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 38 70 60
ITGA4 MUTATED 6 8 7
ITGA4 WILD-TYPE 32 62 53
'ITGA4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.275 (Fisher's exact test), Q value = 1

Table S415.  Gene #42: 'ITGA4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 78 102
ITGA4 MUTATED 12 14 10
ITGA4 WILD-TYPE 86 64 92
'ITGA4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.607 (Fisher's exact test), Q value = 1

Table S416.  Gene #42: 'ITGA4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 134 71
ITGA4 MUTATED 7 19 10
ITGA4 WILD-TYPE 66 115 61
'ITGA4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.564 (Fisher's exact test), Q value = 1

Table S417.  Gene #42: 'ITGA4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 117 85
ITGA4 MUTATED 10 12 12
ITGA4 WILD-TYPE 57 105 73
'ITGA4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.267 (Fisher's exact test), Q value = 1

Table S418.  Gene #42: 'ITGA4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 160 82
ITGA4 MUTATED 6 18 10
ITGA4 WILD-TYPE 21 142 72
'ITGA4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.433 (Fisher's exact test), Q value = 1

Table S419.  Gene #42: 'ITGA4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 82 110 77
ITGA4 MUTATED 9 12 13
ITGA4 WILD-TYPE 73 98 64
'ITGA4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.658 (Fisher's exact test), Q value = 1

Table S420.  Gene #42: 'ITGA4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 79 45 120
ITGA4 MUTATED 5 9 6 14
ITGA4 WILD-TYPE 20 70 39 106
'PROL1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.714 (Fisher's exact test), Q value = 1

Table S421.  Gene #43: 'PROL1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
PROL1 MUTATED 8 5 2 8
PROL1 WILD-TYPE 74 46 45 90
'PROL1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.371 (Fisher's exact test), Q value = 1

Table S422.  Gene #43: 'PROL1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 95 106
PROL1 MUTATED 5 6 12
PROL1 WILD-TYPE 72 89 94
'PROL1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.466 (Fisher's exact test), Q value = 1

Table S423.  Gene #43: 'PROL1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
PROL1 MUTATED 5 5 1 6
PROL1 WILD-TYPE 41 53 25 32
'PROL1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.464 (Fisher's exact test), Q value = 1

Table S424.  Gene #43: 'PROL1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 38 70 60
PROL1 MUTATED 2 7 8
PROL1 WILD-TYPE 36 63 52
'PROL1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.863 (Fisher's exact test), Q value = 1

Table S425.  Gene #43: 'PROL1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 78 102
PROL1 MUTATED 7 7 9
PROL1 WILD-TYPE 91 71 93
'PROL1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.635 (Fisher's exact test), Q value = 1

Table S426.  Gene #43: 'PROL1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 134 71
PROL1 MUTATED 6 13 4
PROL1 WILD-TYPE 67 121 67
'PROL1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.168 (Fisher's exact test), Q value = 1

Table S427.  Gene #43: 'PROL1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 117 85
PROL1 MUTATED 9 7 5
PROL1 WILD-TYPE 58 110 80
'PROL1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.25 (Fisher's exact test), Q value = 1

Table S428.  Gene #43: 'PROL1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 160 82
PROL1 MUTATED 4 10 7
PROL1 WILD-TYPE 23 150 75
'PROL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.405 (Fisher's exact test), Q value = 1

Table S429.  Gene #43: 'PROL1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 82 110 77
PROL1 MUTATED 9 8 4
PROL1 WILD-TYPE 73 102 73
'PROL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.655 (Fisher's exact test), Q value = 1

Table S430.  Gene #43: 'PROL1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 79 45 120
PROL1 MUTATED 3 7 2 9
PROL1 WILD-TYPE 22 72 43 111
'EMG1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.966 (Fisher's exact test), Q value = 1

Table S431.  Gene #44: 'EMG1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
EMG1 MUTATED 3 1 1 4
EMG1 WILD-TYPE 79 50 46 94
'EMG1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.835 (Fisher's exact test), Q value = 1

Table S432.  Gene #44: 'EMG1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 95 106
EMG1 MUTATED 2 4 3
EMG1 WILD-TYPE 75 91 103
'EMG1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.531 (Fisher's exact test), Q value = 1

Table S433.  Gene #44: 'EMG1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
EMG1 MUTATED 2 1 1 0
EMG1 WILD-TYPE 44 57 25 38
'EMG1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.16 (Fisher's exact test), Q value = 1

Table S434.  Gene #44: 'EMG1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 38 70 60
EMG1 MUTATED 1 0 3
EMG1 WILD-TYPE 37 70 57
'EMG1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.441 (Fisher's exact test), Q value = 1

Table S435.  Gene #44: 'EMG1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 78 102
EMG1 MUTATED 5 2 2
EMG1 WILD-TYPE 93 76 100
'EMG1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.264 (Fisher's exact test), Q value = 1

Table S436.  Gene #44: 'EMG1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 134 71
EMG1 MUTATED 4 2 3
EMG1 WILD-TYPE 69 132 68
'EMG1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.388 (Fisher's exact test), Q value = 1

Table S437.  Gene #44: 'EMG1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 117 85
EMG1 MUTATED 3 2 4
EMG1 WILD-TYPE 64 115 81
'EMG1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S438.  Gene #44: 'EMG1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 160 82
EMG1 MUTATED 1 5 3
EMG1 WILD-TYPE 26 155 79
'EMG1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.837 (Fisher's exact test), Q value = 1

Table S439.  Gene #44: 'EMG1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 82 110 77
EMG1 MUTATED 3 3 3
EMG1 WILD-TYPE 79 107 74
'EMG1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.311 (Fisher's exact test), Q value = 1

Table S440.  Gene #44: 'EMG1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 79 45 120
EMG1 MUTATED 1 3 3 2
EMG1 WILD-TYPE 24 76 42 118
'TMPRSS11B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.672 (Fisher's exact test), Q value = 1

Table S441.  Gene #45: 'TMPRSS11B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
TMPRSS11B MUTATED 8 3 2 9
TMPRSS11B WILD-TYPE 74 48 45 89
'TMPRSS11B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.26 (Fisher's exact test), Q value = 1

Table S442.  Gene #45: 'TMPRSS11B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 95 106
TMPRSS11B MUTATED 3 8 11
TMPRSS11B WILD-TYPE 74 87 95
'TMPRSS11B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0721 (Fisher's exact test), Q value = 1

Table S443.  Gene #45: 'TMPRSS11B MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
TMPRSS11B MUTATED 2 4 3 8
TMPRSS11B WILD-TYPE 44 54 23 30
'TMPRSS11B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.822 (Fisher's exact test), Q value = 1

Table S444.  Gene #45: 'TMPRSS11B MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 38 70 60
TMPRSS11B MUTATED 4 8 5
TMPRSS11B WILD-TYPE 34 62 55
'TMPRSS11B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.683 (Fisher's exact test), Q value = 1

Table S445.  Gene #45: 'TMPRSS11B MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 78 102
TMPRSS11B MUTATED 7 8 7
TMPRSS11B WILD-TYPE 91 70 95
'TMPRSS11B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.586 (Fisher's exact test), Q value = 1

Table S446.  Gene #45: 'TMPRSS11B MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 134 71
TMPRSS11B MUTATED 5 13 4
TMPRSS11B WILD-TYPE 68 121 67
'TMPRSS11B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.263 (Fisher's exact test), Q value = 1

Table S447.  Gene #45: 'TMPRSS11B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 117 85
TMPRSS11B MUTATED 8 10 4
TMPRSS11B WILD-TYPE 59 107 81
'TMPRSS11B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0956 (Fisher's exact test), Q value = 1

Table S448.  Gene #45: 'TMPRSS11B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 160 82
TMPRSS11B MUTATED 4 15 3
TMPRSS11B WILD-TYPE 23 145 79
'TMPRSS11B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.503 (Fisher's exact test), Q value = 1

Table S449.  Gene #45: 'TMPRSS11B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 82 110 77
TMPRSS11B MUTATED 7 11 4
TMPRSS11B WILD-TYPE 75 99 73
'TMPRSS11B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.143 (Fisher's exact test), Q value = 1

Table S450.  Gene #45: 'TMPRSS11B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 79 45 120
TMPRSS11B MUTATED 3 3 2 14
TMPRSS11B WILD-TYPE 22 76 43 106
'RQCD1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0648 (Fisher's exact test), Q value = 1

Table S451.  Gene #46: 'RQCD1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
RQCD1 MUTATED 6 2 0 1
RQCD1 WILD-TYPE 76 49 47 97
'RQCD1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.18 (Fisher's exact test), Q value = 1

Table S452.  Gene #46: 'RQCD1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 95 106
RQCD1 MUTATED 3 5 1
RQCD1 WILD-TYPE 74 90 105
'RQCD1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0863 (Fisher's exact test), Q value = 1

Table S453.  Gene #46: 'RQCD1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
RQCD1 MUTATED 0 3 2 0
RQCD1 WILD-TYPE 46 55 24 38
'RQCD1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.63 (Fisher's exact test), Q value = 1

Table S454.  Gene #46: 'RQCD1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 38 70 60
RQCD1 MUTATED 0 3 2
RQCD1 WILD-TYPE 38 67 58
'RQCD1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.585 (Fisher's exact test), Q value = 1

Table S455.  Gene #46: 'RQCD1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 78 102
RQCD1 MUTATED 2 2 5
RQCD1 WILD-TYPE 96 76 97
'RQCD1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.372 (Fisher's exact test), Q value = 1

Table S456.  Gene #46: 'RQCD1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 134 71
RQCD1 MUTATED 4 4 1
RQCD1 WILD-TYPE 69 130 70
'RQCD1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.628 (Fisher's exact test), Q value = 1

Table S457.  Gene #46: 'RQCD1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 117 85
RQCD1 MUTATED 1 5 3
RQCD1 WILD-TYPE 66 112 82
'RQCD1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.89 (Fisher's exact test), Q value = 1

Table S458.  Gene #46: 'RQCD1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 160 82
RQCD1 MUTATED 1 6 2
RQCD1 WILD-TYPE 26 154 80
'RQCD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.527 (Fisher's exact test), Q value = 1

Table S459.  Gene #46: 'RQCD1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 82 110 77
RQCD1 MUTATED 4 4 1
RQCD1 WILD-TYPE 78 106 76
'RQCD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.921 (Fisher's exact test), Q value = 1

Table S460.  Gene #46: 'RQCD1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 79 45 120
RQCD1 MUTATED 1 2 1 5
RQCD1 WILD-TYPE 24 77 44 115
'OR4E2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.257 (Fisher's exact test), Q value = 1

Table S461.  Gene #47: 'OR4E2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
OR4E2 MUTATED 6 2 3 13
OR4E2 WILD-TYPE 76 49 44 85
'OR4E2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.757 (Fisher's exact test), Q value = 1

Table S462.  Gene #47: 'OR4E2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 95 106
OR4E2 MUTATED 5 9 10
OR4E2 WILD-TYPE 72 86 96
'OR4E2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.844 (Fisher's exact test), Q value = 1

Table S463.  Gene #47: 'OR4E2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
OR4E2 MUTATED 4 5 1 4
OR4E2 WILD-TYPE 42 53 25 34
'OR4E2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.529 (Fisher's exact test), Q value = 1

Table S464.  Gene #47: 'OR4E2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 38 70 60
OR4E2 MUTATED 2 8 4
OR4E2 WILD-TYPE 36 62 56
'OR4E2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.256 (Fisher's exact test), Q value = 1

Table S465.  Gene #47: 'OR4E2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 78 102
OR4E2 MUTATED 5 9 10
OR4E2 WILD-TYPE 93 69 92
'OR4E2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.454 (Fisher's exact test), Q value = 1

Table S466.  Gene #47: 'OR4E2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 134 71
OR4E2 MUTATED 4 12 8
OR4E2 WILD-TYPE 69 122 63
'OR4E2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.754 (Fisher's exact test), Q value = 1

Table S467.  Gene #47: 'OR4E2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 117 85
OR4E2 MUTATED 4 11 7
OR4E2 WILD-TYPE 63 106 78
'OR4E2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.921 (Fisher's exact test), Q value = 1

Table S468.  Gene #47: 'OR4E2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 160 82
OR4E2 MUTATED 2 14 6
OR4E2 WILD-TYPE 25 146 76
'OR4E2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.72 (Fisher's exact test), Q value = 1

Table S469.  Gene #47: 'OR4E2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 82 110 77
OR4E2 MUTATED 5 10 7
OR4E2 WILD-TYPE 77 100 70
'OR4E2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.581 (Fisher's exact test), Q value = 1

Table S470.  Gene #47: 'OR4E2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 79 45 120
OR4E2 MUTATED 1 6 2 13
OR4E2 WILD-TYPE 24 73 43 107
'TCHHL1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.647 (Fisher's exact test), Q value = 1

Table S471.  Gene #48: 'TCHHL1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
TCHHL1 MUTATED 15 6 6 12
TCHHL1 WILD-TYPE 67 45 41 86
'TCHHL1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.345 (Fisher's exact test), Q value = 1

Table S472.  Gene #48: 'TCHHL1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 95 106
TCHHL1 MUTATED 7 15 17
TCHHL1 WILD-TYPE 70 80 89
'TCHHL1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.039 (Fisher's exact test), Q value = 1

Table S473.  Gene #48: 'TCHHL1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
TCHHL1 MUTATED 11 3 4 7
TCHHL1 WILD-TYPE 35 55 22 31

Figure S21.  Get High-res Image Gene #48: 'TCHHL1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'TCHHL1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.53 (Fisher's exact test), Q value = 1

Table S474.  Gene #48: 'TCHHL1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 38 70 60
TCHHL1 MUTATED 7 8 10
TCHHL1 WILD-TYPE 31 62 50
'TCHHL1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.263 (Fisher's exact test), Q value = 1

Table S475.  Gene #48: 'TCHHL1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 78 102
TCHHL1 MUTATED 13 15 11
TCHHL1 WILD-TYPE 85 63 91
'TCHHL1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.444 (Fisher's exact test), Q value = 1

Table S476.  Gene #48: 'TCHHL1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 134 71
TCHHL1 MUTATED 10 22 7
TCHHL1 WILD-TYPE 63 112 64
'TCHHL1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.661 (Fisher's exact test), Q value = 1

Table S477.  Gene #48: 'TCHHL1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 117 85
TCHHL1 MUTATED 12 16 11
TCHHL1 WILD-TYPE 55 101 74
'TCHHL1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.414 (Fisher's exact test), Q value = 1

Table S478.  Gene #48: 'TCHHL1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 160 82
TCHHL1 MUTATED 6 21 12
TCHHL1 WILD-TYPE 21 139 70
'TCHHL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.863 (Fisher's exact test), Q value = 1

Table S479.  Gene #48: 'TCHHL1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 82 110 77
TCHHL1 MUTATED 13 16 10
TCHHL1 WILD-TYPE 69 94 67
'TCHHL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.76 (Fisher's exact test), Q value = 1

Table S480.  Gene #48: 'TCHHL1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 79 45 120
TCHHL1 MUTATED 5 11 5 18
TCHHL1 WILD-TYPE 20 68 40 102
'LOC649330 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0289 (Fisher's exact test), Q value = 1

Table S481.  Gene #49: 'LOC649330 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
LOC649330 MUTATED 8 7 0 13
LOC649330 WILD-TYPE 74 44 47 85

Figure S22.  Get High-res Image Gene #49: 'LOC649330 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'LOC649330 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.484 (Fisher's exact test), Q value = 1

Table S482.  Gene #49: 'LOC649330 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 95 106
LOC649330 MUTATED 5 11 12
LOC649330 WILD-TYPE 72 84 94
'LOC649330 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.763 (Fisher's exact test), Q value = 1

Table S483.  Gene #49: 'LOC649330 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
LOC649330 MUTATED 6 6 2 6
LOC649330 WILD-TYPE 40 52 24 32
'LOC649330 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.485 (Fisher's exact test), Q value = 1

Table S484.  Gene #49: 'LOC649330 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 38 70 60
LOC649330 MUTATED 5 6 9
LOC649330 WILD-TYPE 33 64 51
'LOC649330 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.199 (Fisher's exact test), Q value = 1

Table S485.  Gene #49: 'LOC649330 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 78 102
LOC649330 MUTATED 6 11 11
LOC649330 WILD-TYPE 92 67 91
'LOC649330 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.398 (Fisher's exact test), Q value = 1

Table S486.  Gene #49: 'LOC649330 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 134 71
LOC649330 MUTATED 5 17 6
LOC649330 WILD-TYPE 68 117 65
'LOC649330 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.945 (Fisher's exact test), Q value = 1

Table S487.  Gene #49: 'LOC649330 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 117 85
LOC649330 MUTATED 7 13 8
LOC649330 WILD-TYPE 60 104 77
'LOC649330 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.437 (Fisher's exact test), Q value = 1

Table S488.  Gene #49: 'LOC649330 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 160 82
LOC649330 MUTATED 2 20 6
LOC649330 WILD-TYPE 25 140 76
'LOC649330 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.94 (Fisher's exact test), Q value = 1

Table S489.  Gene #49: 'LOC649330 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 82 110 77
LOC649330 MUTATED 9 12 7
LOC649330 WILD-TYPE 73 98 70
'LOC649330 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.617 (Fisher's exact test), Q value = 1

Table S490.  Gene #49: 'LOC649330 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 79 45 120
LOC649330 MUTATED 2 6 4 16
LOC649330 WILD-TYPE 23 73 41 104
'PCSK1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.789 (Fisher's exact test), Q value = 1

Table S491.  Gene #50: 'PCSK1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
PCSK1 MUTATED 6 4 5 11
PCSK1 WILD-TYPE 76 47 42 87
'PCSK1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.418 (Fisher's exact test), Q value = 1

Table S492.  Gene #50: 'PCSK1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 95 106
PCSK1 MUTATED 6 12 8
PCSK1 WILD-TYPE 71 83 98
'PCSK1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.166 (Fisher's exact test), Q value = 1

Table S493.  Gene #50: 'PCSK1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
PCSK1 MUTATED 3 5 0 6
PCSK1 WILD-TYPE 43 53 26 32
'PCSK1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.575 (Fisher's exact test), Q value = 1

Table S494.  Gene #50: 'PCSK1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 38 70 60
PCSK1 MUTATED 4 4 6
PCSK1 WILD-TYPE 34 66 54
'PCSK1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.948 (Fisher's exact test), Q value = 1

Table S495.  Gene #50: 'PCSK1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 78 102
PCSK1 MUTATED 10 7 9
PCSK1 WILD-TYPE 88 71 93
'PCSK1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.723 (Fisher's exact test), Q value = 1

Table S496.  Gene #50: 'PCSK1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 134 71
PCSK1 MUTATED 7 11 8
PCSK1 WILD-TYPE 66 123 63
'PCSK1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S497.  Gene #50: 'PCSK1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 117 85
PCSK1 MUTATED 6 10 7
PCSK1 WILD-TYPE 61 107 78
'PCSK1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.308 (Fisher's exact test), Q value = 1

Table S498.  Gene #50: 'PCSK1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 160 82
PCSK1 MUTATED 4 11 8
PCSK1 WILD-TYPE 23 149 74
'PCSK1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.966 (Fisher's exact test), Q value = 1

Table S499.  Gene #50: 'PCSK1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 82 110 77
PCSK1 MUTATED 7 10 6
PCSK1 WILD-TYPE 75 100 71
'PCSK1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.362 (Fisher's exact test), Q value = 1

Table S500.  Gene #50: 'PCSK1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 79 45 120
PCSK1 MUTATED 4 8 2 9
PCSK1 WILD-TYPE 21 71 43 111
'ELF5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.79 (Fisher's exact test), Q value = 1

Table S501.  Gene #51: 'ELF5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
ELF5 MUTATED 3 2 2 2
ELF5 WILD-TYPE 79 49 45 96
'ELF5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.532 (Fisher's exact test), Q value = 1

Table S502.  Gene #51: 'ELF5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 95 106
ELF5 MUTATED 4 2 3
ELF5 WILD-TYPE 73 93 103
'ELF5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.708 (Fisher's exact test), Q value = 1

Table S503.  Gene #51: 'ELF5 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
ELF5 MUTATED 1 1 1 2
ELF5 WILD-TYPE 45 57 25 36
'ELF5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S504.  Gene #51: 'ELF5 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 38 70 60
ELF5 MUTATED 1 2 2
ELF5 WILD-TYPE 37 68 58
'ELF5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.441 (Fisher's exact test), Q value = 1

Table S505.  Gene #51: 'ELF5 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 78 102
ELF5 MUTATED 5 2 2
ELF5 WILD-TYPE 93 76 100
'ELF5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.372 (Fisher's exact test), Q value = 1

Table S506.  Gene #51: 'ELF5 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 134 71
ELF5 MUTATED 4 4 1
ELF5 WILD-TYPE 69 130 70
'ELF5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.257 (Fisher's exact test), Q value = 1

Table S507.  Gene #51: 'ELF5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 117 85
ELF5 MUTATED 2 2 5
ELF5 WILD-TYPE 65 115 80
'ELF5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0858 (Fisher's exact test), Q value = 1

Table S508.  Gene #51: 'ELF5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 160 82
ELF5 MUTATED 0 3 6
ELF5 WILD-TYPE 27 157 76
'ELF5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.153 (Fisher's exact test), Q value = 1

Table S509.  Gene #51: 'ELF5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 82 110 77
ELF5 MUTATED 5 1 3
ELF5 WILD-TYPE 77 109 74
'ELF5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.121 (Fisher's exact test), Q value = 1

Table S510.  Gene #51: 'ELF5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 79 45 120
ELF5 MUTATED 0 6 0 3
ELF5 WILD-TYPE 25 73 45 117
'OGDHL MUTATION STATUS' versus 'CN_CNMF'

P value = 0.599 (Fisher's exact test), Q value = 1

Table S511.  Gene #52: 'OGDHL MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
OGDHL MUTATED 13 6 4 10
OGDHL WILD-TYPE 69 45 43 88
'OGDHL MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0948 (Fisher's exact test), Q value = 1

Table S512.  Gene #52: 'OGDHL MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 95 106
OGDHL MUTATED 6 17 10
OGDHL WILD-TYPE 71 78 96
'OGDHL MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.64 (Fisher's exact test), Q value = 1

Table S513.  Gene #52: 'OGDHL MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
OGDHL MUTATED 8 7 3 3
OGDHL WILD-TYPE 38 51 23 35
'OGDHL MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.427 (Fisher's exact test), Q value = 1

Table S514.  Gene #52: 'OGDHL MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 38 70 60
OGDHL MUTATED 7 7 7
OGDHL WILD-TYPE 31 63 53
'OGDHL MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.481 (Fisher's exact test), Q value = 1

Table S515.  Gene #52: 'OGDHL MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 78 102
OGDHL MUTATED 9 9 15
OGDHL WILD-TYPE 89 69 87
'OGDHL MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.455 (Fisher's exact test), Q value = 1

Table S516.  Gene #52: 'OGDHL MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 134 71
OGDHL MUTATED 6 19 8
OGDHL WILD-TYPE 67 115 63
'OGDHL MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0579 (Fisher's exact test), Q value = 1

Table S517.  Gene #52: 'OGDHL MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 117 85
OGDHL MUTATED 12 16 5
OGDHL WILD-TYPE 55 101 80
'OGDHL MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S518.  Gene #52: 'OGDHL MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 160 82
OGDHL MUTATED 3 20 10
OGDHL WILD-TYPE 24 140 72
'OGDHL MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0667 (Fisher's exact test), Q value = 1

Table S519.  Gene #52: 'OGDHL MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 82 110 77
OGDHL MUTATED 12 17 4
OGDHL WILD-TYPE 70 93 73
'OGDHL MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.317 (Fisher's exact test), Q value = 1

Table S520.  Gene #52: 'OGDHL MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 79 45 120
OGDHL MUTATED 3 10 2 18
OGDHL WILD-TYPE 22 69 43 102
'PCDP1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.224 (Fisher's exact test), Q value = 1

Table S521.  Gene #53: 'PCDP1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
PCDP1 MUTATED 3 2 6 7
PCDP1 WILD-TYPE 79 49 41 91
'PCDP1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.113 (Fisher's exact test), Q value = 1

Table S522.  Gene #53: 'PCDP1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 95 106
PCDP1 MUTATED 2 10 6
PCDP1 WILD-TYPE 75 85 100
'PCDP1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.56 (Fisher's exact test), Q value = 1

Table S523.  Gene #53: 'PCDP1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
PCDP1 MUTATED 3 5 0 3
PCDP1 WILD-TYPE 43 53 26 35
'PCDP1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.153 (Fisher's exact test), Q value = 1

Table S524.  Gene #53: 'PCDP1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 38 70 60
PCDP1 MUTATED 2 2 7
PCDP1 WILD-TYPE 36 68 53
'PCDP1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.367 (Fisher's exact test), Q value = 1

Table S525.  Gene #53: 'PCDP1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 78 102
PCDP1 MUTATED 9 3 6
PCDP1 WILD-TYPE 89 75 96
'PCDP1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.814 (Fisher's exact test), Q value = 1

Table S526.  Gene #53: 'PCDP1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 134 71
PCDP1 MUTATED 6 8 4
PCDP1 WILD-TYPE 67 126 67
'PCDP1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.469 (Fisher's exact test), Q value = 1

Table S527.  Gene #53: 'PCDP1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 117 85
PCDP1 MUTATED 5 5 7
PCDP1 WILD-TYPE 62 112 78
'PCDP1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.215 (Fisher's exact test), Q value = 1

Table S528.  Gene #53: 'PCDP1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 160 82
PCDP1 MUTATED 2 7 8
PCDP1 WILD-TYPE 25 153 74
'PCDP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.599 (Fisher's exact test), Q value = 1

Table S529.  Gene #53: 'PCDP1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 82 110 77
PCDP1 MUTATED 6 5 6
PCDP1 WILD-TYPE 76 105 71
'PCDP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.113 (Fisher's exact test), Q value = 1

Table S530.  Gene #53: 'PCDP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 79 45 120
PCDP1 MUTATED 2 8 0 7
PCDP1 WILD-TYPE 23 71 45 113
'FUT9 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.804 (Fisher's exact test), Q value = 1

Table S531.  Gene #54: 'FUT9 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
FUT9 MUTATED 9 7 4 9
FUT9 WILD-TYPE 73 44 43 89
'FUT9 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0313 (Fisher's exact test), Q value = 1

Table S532.  Gene #54: 'FUT9 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 95 106
FUT9 MUTATED 12 12 5
FUT9 WILD-TYPE 65 83 101

Figure S23.  Get High-res Image Gene #54: 'FUT9 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'FUT9 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.361 (Fisher's exact test), Q value = 1

Table S533.  Gene #54: 'FUT9 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
FUT9 MUTATED 4 9 1 6
FUT9 WILD-TYPE 42 49 25 32
'FUT9 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.375 (Fisher's exact test), Q value = 1

Table S534.  Gene #54: 'FUT9 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 38 70 60
FUT9 MUTATED 2 10 8
FUT9 WILD-TYPE 36 60 52
'FUT9 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.169 (Fisher's exact test), Q value = 1

Table S535.  Gene #54: 'FUT9 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 78 102
FUT9 MUTATED 13 4 12
FUT9 WILD-TYPE 85 74 90
'FUT9 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0515 (Fisher's exact test), Q value = 1

Table S536.  Gene #54: 'FUT9 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 134 71
FUT9 MUTATED 11 8 10
FUT9 WILD-TYPE 62 126 61
'FUT9 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.227 (Fisher's exact test), Q value = 1

Table S537.  Gene #54: 'FUT9 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 117 85
FUT9 MUTATED 4 16 7
FUT9 WILD-TYPE 63 101 78
'FUT9 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.56 (Fisher's exact test), Q value = 1

Table S538.  Gene #54: 'FUT9 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 160 82
FUT9 MUTATED 1 18 8
FUT9 WILD-TYPE 26 142 74
'FUT9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.39 (Fisher's exact test), Q value = 1

Table S539.  Gene #54: 'FUT9 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 82 110 77
FUT9 MUTATED 8 14 5
FUT9 WILD-TYPE 74 96 72
'FUT9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0199 (Fisher's exact test), Q value = 1

Table S540.  Gene #54: 'FUT9 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 79 45 120
FUT9 MUTATED 1 9 0 17
FUT9 WILD-TYPE 24 70 45 103

Figure S24.  Get High-res Image Gene #54: 'FUT9 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'GCOM1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.96 (Fisher's exact test), Q value = 1

Table S541.  Gene #55: 'GCOM1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
GCOM1 MUTATED 6 5 4 9
GCOM1 WILD-TYPE 76 46 43 89
'GCOM1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.86 (Fisher's exact test), Q value = 1

Table S542.  Gene #55: 'GCOM1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 95 106
GCOM1 MUTATED 7 9 8
GCOM1 WILD-TYPE 70 86 98
'GCOM1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.525 (Fisher's exact test), Q value = 1

Table S543.  Gene #55: 'GCOM1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
GCOM1 MUTATED 1 5 1 3
GCOM1 WILD-TYPE 45 53 25 35
'GCOM1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.593 (Fisher's exact test), Q value = 1

Table S544.  Gene #55: 'GCOM1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 38 70 60
GCOM1 MUTATED 1 4 5
GCOM1 WILD-TYPE 37 66 55
'GCOM1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0268 (Fisher's exact test), Q value = 1

Table S545.  Gene #55: 'GCOM1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 78 102
GCOM1 MUTATED 8 12 4
GCOM1 WILD-TYPE 90 66 98

Figure S25.  Get High-res Image Gene #55: 'GCOM1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'GCOM1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.698 (Fisher's exact test), Q value = 1

Table S546.  Gene #55: 'GCOM1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 134 71
GCOM1 MUTATED 8 11 5
GCOM1 WILD-TYPE 65 123 66
'GCOM1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.43 (Fisher's exact test), Q value = 1

Table S547.  Gene #55: 'GCOM1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 117 85
GCOM1 MUTATED 5 13 5
GCOM1 WILD-TYPE 62 104 80
'GCOM1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.685 (Fisher's exact test), Q value = 1

Table S548.  Gene #55: 'GCOM1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 160 82
GCOM1 MUTATED 1 14 8
GCOM1 WILD-TYPE 26 146 74
'GCOM1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.39 (Fisher's exact test), Q value = 1

Table S549.  Gene #55: 'GCOM1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 82 110 77
GCOM1 MUTATED 7 12 4
GCOM1 WILD-TYPE 75 98 73
'GCOM1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.284 (Fisher's exact test), Q value = 1

Table S550.  Gene #55: 'GCOM1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 79 45 120
GCOM1 MUTATED 1 8 1 13
GCOM1 WILD-TYPE 24 71 44 107
'SIRPB1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.809 (Fisher's exact test), Q value = 1

Table S551.  Gene #56: 'SIRPB1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
SIRPB1 MUTATED 5 5 3 9
SIRPB1 WILD-TYPE 77 46 44 89
'SIRPB1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.886 (Fisher's exact test), Q value = 1

Table S552.  Gene #56: 'SIRPB1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 95 106
SIRPB1 MUTATED 5 8 9
SIRPB1 WILD-TYPE 72 87 97
'SIRPB1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.184 (Fisher's exact test), Q value = 1

Table S553.  Gene #56: 'SIRPB1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
SIRPB1 MUTATED 4 5 0 6
SIRPB1 WILD-TYPE 42 53 26 32
'SIRPB1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.596 (Fisher's exact test), Q value = 1

Table S554.  Gene #56: 'SIRPB1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 38 70 60
SIRPB1 MUTATED 2 6 7
SIRPB1 WILD-TYPE 36 64 53
'SIRPB1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.15 (Fisher's exact test), Q value = 1

Table S555.  Gene #56: 'SIRPB1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 78 102
SIRPB1 MUTATED 7 10 5
SIRPB1 WILD-TYPE 91 68 97
'SIRPB1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.743 (Fisher's exact test), Q value = 1

Table S556.  Gene #56: 'SIRPB1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 134 71
SIRPB1 MUTATED 6 12 4
SIRPB1 WILD-TYPE 67 122 67
'SIRPB1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.363 (Fisher's exact test), Q value = 1

Table S557.  Gene #56: 'SIRPB1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 117 85
SIRPB1 MUTATED 8 8 5
SIRPB1 WILD-TYPE 59 109 80
'SIRPB1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.424 (Fisher's exact test), Q value = 1

Table S558.  Gene #56: 'SIRPB1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 160 82
SIRPB1 MUTATED 2 10 9
SIRPB1 WILD-TYPE 25 150 73
'SIRPB1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.718 (Fisher's exact test), Q value = 1

Table S559.  Gene #56: 'SIRPB1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 82 110 77
SIRPB1 MUTATED 8 8 5
SIRPB1 WILD-TYPE 74 102 72
'SIRPB1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0924 (Fisher's exact test), Q value = 1

Table S560.  Gene #56: 'SIRPB1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 79 45 120
SIRPB1 MUTATED 2 9 0 10
SIRPB1 WILD-TYPE 23 70 45 110
'CHGB MUTATION STATUS' versus 'CN_CNMF'

P value = 0.613 (Fisher's exact test), Q value = 1

Table S561.  Gene #57: 'CHGB MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
CHGB MUTATED 8 3 6 12
CHGB WILD-TYPE 74 48 41 86
'CHGB MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.18 (Fisher's exact test), Q value = 1

Table S562.  Gene #57: 'CHGB MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 95 106
CHGB MUTATED 4 11 14
CHGB WILD-TYPE 73 84 92
'CHGB MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0653 (Fisher's exact test), Q value = 1

Table S563.  Gene #57: 'CHGB MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
CHGB MUTATED 8 4 0 2
CHGB WILD-TYPE 38 54 26 36
'CHGB MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0018 (Fisher's exact test), Q value = 1

Table S564.  Gene #57: 'CHGB MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 38 70 60
CHGB MUTATED 2 1 11
CHGB WILD-TYPE 36 69 49

Figure S26.  Get High-res Image Gene #57: 'CHGB MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'CHGB MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.139 (Fisher's exact test), Q value = 1

Table S565.  Gene #57: 'CHGB MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 78 102
CHGB MUTATED 12 11 6
CHGB WILD-TYPE 86 67 96
'CHGB MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.457 (Fisher's exact test), Q value = 1

Table S566.  Gene #57: 'CHGB MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 134 71
CHGB MUTATED 7 17 5
CHGB WILD-TYPE 66 117 66
'CHGB MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.572 (Fisher's exact test), Q value = 1

Table S567.  Gene #57: 'CHGB MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 117 85
CHGB MUTATED 7 10 11
CHGB WILD-TYPE 60 107 74
'CHGB MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.948 (Fisher's exact test), Q value = 1

Table S568.  Gene #57: 'CHGB MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 160 82
CHGB MUTATED 2 17 9
CHGB WILD-TYPE 25 143 73
'CHGB MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.397 (Fisher's exact test), Q value = 1

Table S569.  Gene #57: 'CHGB MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 82 110 77
CHGB MUTATED 8 9 11
CHGB WILD-TYPE 74 101 66
'CHGB MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.974 (Fisher's exact test), Q value = 1

Table S570.  Gene #57: 'CHGB MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 79 45 120
CHGB MUTATED 2 9 5 12
CHGB WILD-TYPE 23 70 40 108
'PENK MUTATION STATUS' versus 'CN_CNMF'

P value = 0.444 (Fisher's exact test), Q value = 1

Table S571.  Gene #58: 'PENK MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
PENK MUTATED 5 3 3 12
PENK WILD-TYPE 77 48 44 86
'PENK MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0637 (Fisher's exact test), Q value = 1

Table S572.  Gene #58: 'PENK MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 95 106
PENK MUTATED 3 6 14
PENK WILD-TYPE 74 89 92
'PENK MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.345 (Fisher's exact test), Q value = 1

Table S573.  Gene #58: 'PENK MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
PENK MUTATED 7 7 1 2
PENK WILD-TYPE 39 51 25 36
'PENK MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.822 (Fisher's exact test), Q value = 1

Table S574.  Gene #58: 'PENK MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 38 70 60
PENK MUTATED 4 8 5
PENK WILD-TYPE 34 62 55
'PENK MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0591 (Fisher's exact test), Q value = 1

Table S575.  Gene #58: 'PENK MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 78 102
PENK MUTATED 4 11 8
PENK WILD-TYPE 94 67 94
'PENK MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.6 (Fisher's exact test), Q value = 1

Table S576.  Gene #58: 'PENK MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 134 71
PENK MUTATED 4 13 6
PENK WILD-TYPE 69 121 65
'PENK MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.605 (Fisher's exact test), Q value = 1

Table S577.  Gene #58: 'PENK MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 117 85
PENK MUTATED 4 10 9
PENK WILD-TYPE 63 107 76
'PENK MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.685 (Fisher's exact test), Q value = 1

Table S578.  Gene #58: 'PENK MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 160 82
PENK MUTATED 1 14 8
PENK WILD-TYPE 26 146 74
'PENK MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.299 (Fisher's exact test), Q value = 1

Table S579.  Gene #58: 'PENK MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 82 110 77
PENK MUTATED 4 10 9
PENK WILD-TYPE 78 100 68
'PENK MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.471 (Fisher's exact test), Q value = 1

Table S580.  Gene #58: 'PENK MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 79 45 120
PENK MUTATED 0 7 4 12
PENK WILD-TYPE 25 72 41 108
'C8ORF34 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.752 (Fisher's exact test), Q value = 1

Table S581.  Gene #59: 'C8ORF34 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
C8ORF34 MUTATED 7 5 4 13
C8ORF34 WILD-TYPE 75 46 43 85
'C8ORF34 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.613 (Fisher's exact test), Q value = 1

Table S582.  Gene #59: 'C8ORF34 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 95 106
C8ORF34 MUTATED 8 12 9
C8ORF34 WILD-TYPE 69 83 97
'C8ORF34 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.358 (Fisher's exact test), Q value = 1

Table S583.  Gene #59: 'C8ORF34 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
C8ORF34 MUTATED 8 6 1 3
C8ORF34 WILD-TYPE 38 52 25 35
'C8ORF34 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.511 (Fisher's exact test), Q value = 1

Table S584.  Gene #59: 'C8ORF34 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 38 70 60
C8ORF34 MUTATED 6 7 5
C8ORF34 WILD-TYPE 32 63 55
'C8ORF34 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0728 (Fisher's exact test), Q value = 1

Table S585.  Gene #59: 'C8ORF34 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 78 102
C8ORF34 MUTATED 16 5 8
C8ORF34 WILD-TYPE 82 73 94
'C8ORF34 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.256 (Fisher's exact test), Q value = 1

Table S586.  Gene #59: 'C8ORF34 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 134 71
C8ORF34 MUTATED 10 10 9
C8ORF34 WILD-TYPE 63 124 62
'C8ORF34 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0915 (Fisher's exact test), Q value = 1

Table S587.  Gene #59: 'C8ORF34 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 117 85
C8ORF34 MUTATED 7 7 13
C8ORF34 WILD-TYPE 60 110 72
'C8ORF34 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.204 (Fisher's exact test), Q value = 1

Table S588.  Gene #59: 'C8ORF34 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 160 82
C8ORF34 MUTATED 4 12 11
C8ORF34 WILD-TYPE 23 148 71
'C8ORF34 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.063 (Fisher's exact test), Q value = 1

Table S589.  Gene #59: 'C8ORF34 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 82 110 77
C8ORF34 MUTATED 7 7 13
C8ORF34 WILD-TYPE 75 103 64
'C8ORF34 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.148 (Fisher's exact test), Q value = 1

Table S590.  Gene #59: 'C8ORF34 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 79 45 120
C8ORF34 MUTATED 4 11 5 7
C8ORF34 WILD-TYPE 21 68 40 113
'GALNTL5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.454 (Fisher's exact test), Q value = 1

Table S591.  Gene #60: 'GALNTL5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
GALNTL5 MUTATED 7 3 1 4
GALNTL5 WILD-TYPE 75 48 46 94
'GALNTL5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.288 (Fisher's exact test), Q value = 1

Table S592.  Gene #60: 'GALNTL5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 95 106
GALNTL5 MUTATED 6 6 3
GALNTL5 WILD-TYPE 71 89 103
'GALNTL5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.364 (Fisher's exact test), Q value = 1

Table S593.  Gene #60: 'GALNTL5 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
GALNTL5 MUTATED 5 2 1 1
GALNTL5 WILD-TYPE 41 56 25 37
'GALNTL5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.755 (Fisher's exact test), Q value = 1

Table S594.  Gene #60: 'GALNTL5 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 38 70 60
GALNTL5 MUTATED 3 3 3
GALNTL5 WILD-TYPE 35 67 57
'GALNTL5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.686 (Fisher's exact test), Q value = 1

Table S595.  Gene #60: 'GALNTL5 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 78 102
GALNTL5 MUTATED 5 3 7
GALNTL5 WILD-TYPE 93 75 95
'GALNTL5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.456 (Fisher's exact test), Q value = 1

Table S596.  Gene #60: 'GALNTL5 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 134 71
GALNTL5 MUTATED 5 5 5
GALNTL5 WILD-TYPE 68 129 66
'GALNTL5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.532 (Fisher's exact test), Q value = 1

Table S597.  Gene #60: 'GALNTL5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 117 85
GALNTL5 MUTATED 2 7 6
GALNTL5 WILD-TYPE 65 110 79
'GALNTL5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.923 (Fisher's exact test), Q value = 1

Table S598.  Gene #60: 'GALNTL5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 160 82
GALNTL5 MUTATED 1 10 4
GALNTL5 WILD-TYPE 26 150 78
'GALNTL5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.287 (Fisher's exact test), Q value = 1

Table S599.  Gene #60: 'GALNTL5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 82 110 77
GALNTL5 MUTATED 2 7 6
GALNTL5 WILD-TYPE 80 103 71
'GALNTL5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.658 (Fisher's exact test), Q value = 1

Table S600.  Gene #60: 'GALNTL5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 79 45 120
GALNTL5 MUTATED 1 4 1 9
GALNTL5 WILD-TYPE 24 75 44 111
'TCEB3C MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0586 (Fisher's exact test), Q value = 1

Table S601.  Gene #61: 'TCEB3C MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
TCEB3C MUTATED 14 2 3 7
TCEB3C WILD-TYPE 68 49 44 91
'TCEB3C MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.626 (Fisher's exact test), Q value = 1

Table S602.  Gene #61: 'TCEB3C MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 95 106
TCEB3C MUTATED 7 11 8
TCEB3C WILD-TYPE 70 84 98
'TCEB3C MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.737 (Fisher's exact test), Q value = 1

Table S603.  Gene #61: 'TCEB3C MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
TCEB3C MUTATED 7 5 3 5
TCEB3C WILD-TYPE 39 53 23 33
'TCEB3C MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.53 (Fisher's exact test), Q value = 1

Table S604.  Gene #61: 'TCEB3C MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 38 70 60
TCEB3C MUTATED 5 10 5
TCEB3C WILD-TYPE 33 60 55
'TCEB3C MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.607 (Fisher's exact test), Q value = 1

Table S605.  Gene #61: 'TCEB3C MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 78 102
TCEB3C MUTATED 8 6 12
TCEB3C WILD-TYPE 90 72 90
'TCEB3C MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.448 (Fisher's exact test), Q value = 1

Table S606.  Gene #61: 'TCEB3C MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 134 71
TCEB3C MUTATED 7 10 9
TCEB3C WILD-TYPE 66 124 62
'TCEB3C MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.927 (Fisher's exact test), Q value = 1

Table S607.  Gene #61: 'TCEB3C MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 117 85
TCEB3C MUTATED 7 10 8
TCEB3C WILD-TYPE 60 107 77
'TCEB3C MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.153 (Fisher's exact test), Q value = 1

Table S608.  Gene #61: 'TCEB3C MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 160 82
TCEB3C MUTATED 5 15 5
TCEB3C WILD-TYPE 22 145 77
'TCEB3C MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.823 (Fisher's exact test), Q value = 1

Table S609.  Gene #61: 'TCEB3C MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 82 110 77
TCEB3C MUTATED 8 9 8
TCEB3C WILD-TYPE 74 101 69
'TCEB3C MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.216 (Fisher's exact test), Q value = 1

Table S610.  Gene #61: 'TCEB3C MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 79 45 120
TCEB3C MUTATED 5 5 5 10
TCEB3C WILD-TYPE 20 74 40 110
'LRRC4C MUTATION STATUS' versus 'CN_CNMF'

P value = 0.531 (Fisher's exact test), Q value = 1

Table S611.  Gene #62: 'LRRC4C MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
LRRC4C MUTATED 14 9 4 14
LRRC4C WILD-TYPE 68 42 43 84
'LRRC4C MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.11 (Fisher's exact test), Q value = 1

Table S612.  Gene #62: 'LRRC4C MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 95 106
LRRC4C MUTATED 8 20 13
LRRC4C WILD-TYPE 69 75 93
'LRRC4C MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.386 (Fisher's exact test), Q value = 1

Table S613.  Gene #62: 'LRRC4C MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
LRRC4C MUTATED 7 8 2 9
LRRC4C WILD-TYPE 39 50 24 29
'LRRC4C MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.575 (Fisher's exact test), Q value = 1

Table S614.  Gene #62: 'LRRC4C MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 38 70 60
LRRC4C MUTATED 7 12 7
LRRC4C WILD-TYPE 31 58 53
'LRRC4C MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.449 (Fisher's exact test), Q value = 1

Table S615.  Gene #62: 'LRRC4C MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 78 102
LRRC4C MUTATED 11 12 18
LRRC4C WILD-TYPE 87 66 84
'LRRC4C MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.111 (Fisher's exact test), Q value = 1

Table S616.  Gene #62: 'LRRC4C MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 134 71
LRRC4C MUTATED 8 17 16
LRRC4C WILD-TYPE 65 117 55
'LRRC4C MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.571 (Fisher's exact test), Q value = 1

Table S617.  Gene #62: 'LRRC4C MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 117 85
LRRC4C MUTATED 12 17 10
LRRC4C WILD-TYPE 55 100 75
'LRRC4C MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.322 (Fisher's exact test), Q value = 1

Table S618.  Gene #62: 'LRRC4C MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 160 82
LRRC4C MUTATED 6 24 9
LRRC4C WILD-TYPE 21 136 73
'LRRC4C MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.953 (Fisher's exact test), Q value = 1

Table S619.  Gene #62: 'LRRC4C MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 82 110 77
LRRC4C MUTATED 11 17 11
LRRC4C WILD-TYPE 71 93 66
'LRRC4C MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.103 (Fisher's exact test), Q value = 1

Table S620.  Gene #62: 'LRRC4C MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 79 45 120
LRRC4C MUTATED 5 8 3 23
LRRC4C WILD-TYPE 20 71 42 97
'RCAN2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.685 (Fisher's exact test), Q value = 1

Table S621.  Gene #63: 'RCAN2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
RCAN2 MUTATED 6 3 1 5
RCAN2 WILD-TYPE 76 48 46 93
'RCAN2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.243 (Fisher's exact test), Q value = 1

Table S622.  Gene #63: 'RCAN2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 95 106
RCAN2 MUTATED 2 8 5
RCAN2 WILD-TYPE 75 87 101
'RCAN2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.61 (Fisher's exact test), Q value = 1

Table S623.  Gene #63: 'RCAN2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
RCAN2 MUTATED 3 3 0 3
RCAN2 WILD-TYPE 43 55 26 35
'RCAN2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.182 (Fisher's exact test), Q value = 1

Table S624.  Gene #63: 'RCAN2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 38 70 60
RCAN2 MUTATED 1 2 6
RCAN2 WILD-TYPE 37 68 54
'RCAN2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.685 (Fisher's exact test), Q value = 1

Table S625.  Gene #63: 'RCAN2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 78 102
RCAN2 MUTATED 4 4 7
RCAN2 WILD-TYPE 94 74 95
'RCAN2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.429 (Fisher's exact test), Q value = 1

Table S626.  Gene #63: 'RCAN2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 134 71
RCAN2 MUTATED 3 6 6
RCAN2 WILD-TYPE 70 128 65
'RCAN2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.443 (Fisher's exact test), Q value = 1

Table S627.  Gene #63: 'RCAN2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 117 85
RCAN2 MUTATED 3 9 3
RCAN2 WILD-TYPE 64 108 82
'RCAN2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.443 (Fisher's exact test), Q value = 1

Table S628.  Gene #63: 'RCAN2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 160 82
RCAN2 MUTATED 0 11 4
RCAN2 WILD-TYPE 27 149 78
'RCAN2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.372 (Fisher's exact test), Q value = 1

Table S629.  Gene #63: 'RCAN2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 82 110 77
RCAN2 MUTATED 3 9 3
RCAN2 WILD-TYPE 79 101 74
'RCAN2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0728 (Fisher's exact test), Q value = 1

Table S630.  Gene #63: 'RCAN2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 79 45 120
RCAN2 MUTATED 0 4 0 11
RCAN2 WILD-TYPE 25 75 45 109
'SYCP1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.612 (Fisher's exact test), Q value = 1

Table S631.  Gene #64: 'SYCP1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
SYCP1 MUTATED 7 5 3 13
SYCP1 WILD-TYPE 75 46 44 85
'SYCP1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0953 (Fisher's exact test), Q value = 1

Table S632.  Gene #64: 'SYCP1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 95 106
SYCP1 MUTATED 5 15 8
SYCP1 WILD-TYPE 72 80 98
'SYCP1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.14 (Fisher's exact test), Q value = 1

Table S633.  Gene #64: 'SYCP1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
SYCP1 MUTATED 7 4 0 4
SYCP1 WILD-TYPE 39 54 26 34
'SYCP1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.651 (Fisher's exact test), Q value = 1

Table S634.  Gene #64: 'SYCP1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 38 70 60
SYCP1 MUTATED 3 5 7
SYCP1 WILD-TYPE 35 65 53
'SYCP1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0895 (Fisher's exact test), Q value = 1

Table S635.  Gene #64: 'SYCP1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 78 102
SYCP1 MUTATED 8 13 7
SYCP1 WILD-TYPE 90 65 95
'SYCP1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.523 (Fisher's exact test), Q value = 1

Table S636.  Gene #64: 'SYCP1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 134 71
SYCP1 MUTATED 5 16 7
SYCP1 WILD-TYPE 68 118 64
'SYCP1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.76 (Fisher's exact test), Q value = 1

Table S637.  Gene #64: 'SYCP1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 117 85
SYCP1 MUTATED 5 13 8
SYCP1 WILD-TYPE 62 104 77
'SYCP1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.351 (Fisher's exact test), Q value = 1

Table S638.  Gene #64: 'SYCP1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 160 82
SYCP1 MUTATED 2 19 5
SYCP1 WILD-TYPE 25 141 77
'SYCP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.629 (Fisher's exact test), Q value = 1

Table S639.  Gene #64: 'SYCP1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 82 110 77
SYCP1 MUTATED 7 13 6
SYCP1 WILD-TYPE 75 97 71
'SYCP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.557 (Fisher's exact test), Q value = 1

Table S640.  Gene #64: 'SYCP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 79 45 120
SYCP1 MUTATED 2 5 4 15
SYCP1 WILD-TYPE 23 74 41 105
'CYP3A7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.821 (Fisher's exact test), Q value = 1

Table S641.  Gene #65: 'CYP3A7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
CYP3A7 MUTATED 7 4 3 11
CYP3A7 WILD-TYPE 75 47 44 87
'CYP3A7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.349 (Fisher's exact test), Q value = 1

Table S642.  Gene #65: 'CYP3A7 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 95 106
CYP3A7 MUTATED 4 9 12
CYP3A7 WILD-TYPE 73 86 94
'CYP3A7 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.53 (Fisher's exact test), Q value = 1

Table S643.  Gene #65: 'CYP3A7 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
CYP3A7 MUTATED 5 3 2 5
CYP3A7 WILD-TYPE 41 55 24 33
'CYP3A7 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.745 (Fisher's exact test), Q value = 1

Table S644.  Gene #65: 'CYP3A7 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 38 70 60
CYP3A7 MUTATED 4 7 4
CYP3A7 WILD-TYPE 34 63 56
'CYP3A7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.225 (Fisher's exact test), Q value = 1

Table S645.  Gene #65: 'CYP3A7 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 78 102
CYP3A7 MUTATED 5 9 11
CYP3A7 WILD-TYPE 93 69 91
'CYP3A7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.482 (Fisher's exact test), Q value = 1

Table S646.  Gene #65: 'CYP3A7 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 134 71
CYP3A7 MUTATED 4 14 7
CYP3A7 WILD-TYPE 69 120 64
'CYP3A7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.308 (Fisher's exact test), Q value = 1

Table S647.  Gene #65: 'CYP3A7 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 117 85
CYP3A7 MUTATED 3 13 8
CYP3A7 WILD-TYPE 64 104 77
'CYP3A7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.136 (Fisher's exact test), Q value = 1

Table S648.  Gene #65: 'CYP3A7 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 160 82
CYP3A7 MUTATED 0 18 6
CYP3A7 WILD-TYPE 27 142 76
'CYP3A7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.295 (Fisher's exact test), Q value = 1

Table S649.  Gene #65: 'CYP3A7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 82 110 77
CYP3A7 MUTATED 7 13 4
CYP3A7 WILD-TYPE 75 97 73
'CYP3A7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.316 (Fisher's exact test), Q value = 1

Table S650.  Gene #65: 'CYP3A7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 79 45 120
CYP3A7 MUTATED 0 6 4 14
CYP3A7 WILD-TYPE 25 73 41 106
'APCS MUTATION STATUS' versus 'CN_CNMF'

P value = 0.709 (Fisher's exact test), Q value = 1

Table S651.  Gene #66: 'APCS MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
APCS MUTATED 3 4 2 4
APCS WILD-TYPE 79 47 45 94
'APCS MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.161 (Fisher's exact test), Q value = 1

Table S652.  Gene #66: 'APCS MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 95 106
APCS MUTATED 4 7 2
APCS WILD-TYPE 73 88 104
'APCS MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.887 (Fisher's exact test), Q value = 1

Table S653.  Gene #66: 'APCS MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
APCS MUTATED 2 4 1 1
APCS WILD-TYPE 44 54 25 37
'APCS MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.725 (Fisher's exact test), Q value = 1

Table S654.  Gene #66: 'APCS MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 38 70 60
APCS MUTATED 1 3 4
APCS WILD-TYPE 37 67 56
'APCS MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.172 (Fisher's exact test), Q value = 1

Table S655.  Gene #66: 'APCS MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 78 102
APCS MUTATED 7 1 5
APCS WILD-TYPE 91 77 97
'APCS MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.401 (Fisher's exact test), Q value = 1

Table S656.  Gene #66: 'APCS MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 134 71
APCS MUTATED 5 4 4
APCS WILD-TYPE 68 130 67
'APCS MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.546 (Fisher's exact test), Q value = 1

Table S657.  Gene #66: 'APCS MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 117 85
APCS MUTATED 5 5 3
APCS WILD-TYPE 62 112 82
'APCS MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.481 (Fisher's exact test), Q value = 1

Table S658.  Gene #66: 'APCS MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 160 82
APCS MUTATED 2 6 5
APCS WILD-TYPE 25 154 77
'APCS MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.517 (Fisher's exact test), Q value = 1

Table S659.  Gene #66: 'APCS MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 82 110 77
APCS MUTATED 6 4 3
APCS WILD-TYPE 76 106 74
'APCS MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.384 (Fisher's exact test), Q value = 1

Table S660.  Gene #66: 'APCS MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 79 45 120
APCS MUTATED 1 5 0 7
APCS WILD-TYPE 24 74 45 113
'STXBP5L MUTATION STATUS' versus 'CN_CNMF'

P value = 0.895 (Fisher's exact test), Q value = 1

Table S661.  Gene #67: 'STXBP5L MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
STXBP5L MUTATED 18 9 10 18
STXBP5L WILD-TYPE 64 42 37 80
'STXBP5L MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.471 (Fisher's exact test), Q value = 1

Table S662.  Gene #67: 'STXBP5L MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 95 106
STXBP5L MUTATED 13 17 25
STXBP5L WILD-TYPE 64 78 81
'STXBP5L MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.49 (Fisher's exact test), Q value = 1

Table S663.  Gene #67: 'STXBP5L MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
STXBP5L MUTATED 12 11 3 9
STXBP5L WILD-TYPE 34 47 23 29
'STXBP5L MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.176 (Fisher's exact test), Q value = 1

Table S664.  Gene #67: 'STXBP5L MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 38 70 60
STXBP5L MUTATED 5 13 17
STXBP5L WILD-TYPE 33 57 43
'STXBP5L MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0862 (Fisher's exact test), Q value = 1

Table S665.  Gene #67: 'STXBP5L MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 78 102
STXBP5L MUTATED 20 21 14
STXBP5L WILD-TYPE 78 57 88
'STXBP5L MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0321 (Fisher's exact test), Q value = 1

Table S666.  Gene #67: 'STXBP5L MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 134 71
STXBP5L MUTATED 19 29 7
STXBP5L WILD-TYPE 54 105 64

Figure S27.  Get High-res Image Gene #67: 'STXBP5L MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'STXBP5L MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.658 (Fisher's exact test), Q value = 1

Table S667.  Gene #67: 'STXBP5L MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 117 85
STXBP5L MUTATED 14 25 14
STXBP5L WILD-TYPE 53 92 71
'STXBP5L MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.576 (Fisher's exact test), Q value = 1

Table S668.  Gene #67: 'STXBP5L MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 160 82
STXBP5L MUTATED 7 32 14
STXBP5L WILD-TYPE 20 128 68
'STXBP5L MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.785 (Fisher's exact test), Q value = 1

Table S669.  Gene #67: 'STXBP5L MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 82 110 77
STXBP5L MUTATED 15 24 14
STXBP5L WILD-TYPE 67 86 63
'STXBP5L MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.134 (Fisher's exact test), Q value = 1

Table S670.  Gene #67: 'STXBP5L MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 79 45 120
STXBP5L MUTATED 6 14 4 29
STXBP5L WILD-TYPE 19 65 41 91
'SCN5A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.739 (Fisher's exact test), Q value = 1

Table S671.  Gene #68: 'SCN5A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
SCN5A MUTATED 24 11 11 23
SCN5A WILD-TYPE 58 40 36 75
'SCN5A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.296 (Fisher's exact test), Q value = 1

Table S672.  Gene #68: 'SCN5A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 95 106
SCN5A MUTATED 17 29 23
SCN5A WILD-TYPE 60 66 83
'SCN5A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0826 (Fisher's exact test), Q value = 1

Table S673.  Gene #68: 'SCN5A MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
SCN5A MUTATED 13 11 3 14
SCN5A WILD-TYPE 33 47 23 24
'SCN5A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.169 (Fisher's exact test), Q value = 1

Table S674.  Gene #68: 'SCN5A MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 38 70 60
SCN5A MUTATED 11 12 18
SCN5A WILD-TYPE 27 58 42
'SCN5A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.776 (Fisher's exact test), Q value = 1

Table S675.  Gene #68: 'SCN5A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 78 102
SCN5A MUTATED 25 17 27
SCN5A WILD-TYPE 73 61 75
'SCN5A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.759 (Fisher's exact test), Q value = 1

Table S676.  Gene #68: 'SCN5A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 134 71
SCN5A MUTATED 17 32 20
SCN5A WILD-TYPE 56 102 51
'SCN5A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.75 (Fisher's exact test), Q value = 1

Table S677.  Gene #68: 'SCN5A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 117 85
SCN5A MUTATED 14 30 22
SCN5A WILD-TYPE 53 87 63
'SCN5A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.89 (Fisher's exact test), Q value = 1

Table S678.  Gene #68: 'SCN5A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 160 82
SCN5A MUTATED 6 41 19
SCN5A WILD-TYPE 21 119 63
'SCN5A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.809 (Fisher's exact test), Q value = 1

Table S679.  Gene #68: 'SCN5A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 82 110 77
SCN5A MUTATED 20 29 17
SCN5A WILD-TYPE 62 81 60
'SCN5A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.898 (Fisher's exact test), Q value = 1

Table S680.  Gene #68: 'SCN5A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 79 45 120
SCN5A MUTATED 5 18 12 31
SCN5A WILD-TYPE 20 61 33 89
'LCE1B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.108 (Fisher's exact test), Q value = 1

Table S681.  Gene #69: 'LCE1B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
LCE1B MUTATED 6 5 1 2
LCE1B WILD-TYPE 76 46 46 96
'LCE1B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.403 (Fisher's exact test), Q value = 1

Table S682.  Gene #69: 'LCE1B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 95 106
LCE1B MUTATED 6 3 5
LCE1B WILD-TYPE 71 92 101
'LCE1B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.853 (Fisher's exact test), Q value = 1

Table S683.  Gene #69: 'LCE1B MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
LCE1B MUTATED 4 3 2 2
LCE1B WILD-TYPE 42 55 24 36
'LCE1B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.618 (Fisher's exact test), Q value = 1

Table S684.  Gene #69: 'LCE1B MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 38 70 60
LCE1B MUTATED 1 5 5
LCE1B WILD-TYPE 37 65 55
'LCE1B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.566 (Fisher's exact test), Q value = 1

Table S685.  Gene #69: 'LCE1B MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 78 102
LCE1B MUTATED 6 2 6
LCE1B WILD-TYPE 92 76 96
'LCE1B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.395 (Fisher's exact test), Q value = 1

Table S686.  Gene #69: 'LCE1B MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 134 71
LCE1B MUTATED 6 5 3
LCE1B WILD-TYPE 67 129 68
'LCE1B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.77 (Fisher's exact test), Q value = 1

Table S687.  Gene #69: 'LCE1B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 117 85
LCE1B MUTATED 3 7 3
LCE1B WILD-TYPE 64 110 82
'LCE1B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.909 (Fisher's exact test), Q value = 1

Table S688.  Gene #69: 'LCE1B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 160 82
LCE1B MUTATED 1 9 3
LCE1B WILD-TYPE 26 151 79
'LCE1B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.677 (Fisher's exact test), Q value = 1

Table S689.  Gene #69: 'LCE1B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 82 110 77
LCE1B MUTATED 3 7 3
LCE1B WILD-TYPE 79 103 74
'LCE1B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.971 (Fisher's exact test), Q value = 1

Table S690.  Gene #69: 'LCE1B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 79 45 120
LCE1B MUTATED 1 3 2 7
LCE1B WILD-TYPE 24 76 43 113
'TPTE2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.948 (Fisher's exact test), Q value = 1

Table S691.  Gene #70: 'TPTE2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
TPTE2 MUTATED 9 7 5 12
TPTE2 WILD-TYPE 73 44 42 86
'TPTE2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.774 (Fisher's exact test), Q value = 1

Table S692.  Gene #70: 'TPTE2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 95 106
TPTE2 MUTATED 9 13 11
TPTE2 WILD-TYPE 68 82 95
'TPTE2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.247 (Fisher's exact test), Q value = 1

Table S693.  Gene #70: 'TPTE2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
TPTE2 MUTATED 3 11 3 7
TPTE2 WILD-TYPE 43 47 23 31
'TPTE2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.639 (Fisher's exact test), Q value = 1

Table S694.  Gene #70: 'TPTE2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 38 70 60
TPTE2 MUTATED 4 12 8
TPTE2 WILD-TYPE 34 58 52
'TPTE2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.352 (Fisher's exact test), Q value = 1

Table S695.  Gene #70: 'TPTE2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 78 102
TPTE2 MUTATED 12 6 15
TPTE2 WILD-TYPE 86 72 87
'TPTE2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.697 (Fisher's exact test), Q value = 1

Table S696.  Gene #70: 'TPTE2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 134 71
TPTE2 MUTATED 9 14 10
TPTE2 WILD-TYPE 64 120 61
'TPTE2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.245 (Fisher's exact test), Q value = 1

Table S697.  Gene #70: 'TPTE2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 117 85
TPTE2 MUTATED 9 17 6
TPTE2 WILD-TYPE 58 100 79
'TPTE2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.58 (Fisher's exact test), Q value = 1

Table S698.  Gene #70: 'TPTE2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 160 82
TPTE2 MUTATED 2 22 8
TPTE2 WILD-TYPE 25 138 74
'TPTE2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.086 (Fisher's exact test), Q value = 1

Table S699.  Gene #70: 'TPTE2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 82 110 77
TPTE2 MUTATED 12 16 4
TPTE2 WILD-TYPE 70 94 73
'TPTE2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.24 (Fisher's exact test), Q value = 1

Table S700.  Gene #70: 'TPTE2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 79 45 120
TPTE2 MUTATED 2 7 3 20
TPTE2 WILD-TYPE 23 72 42 100
'OR2W1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.588 (Fisher's exact test), Q value = 1

Table S701.  Gene #71: 'OR2W1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
OR2W1 MUTATED 7 2 2 9
OR2W1 WILD-TYPE 75 49 45 89
'OR2W1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.552 (Fisher's exact test), Q value = 1

Table S702.  Gene #71: 'OR2W1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 95 106
OR2W1 MUTATED 4 9 7
OR2W1 WILD-TYPE 73 86 99
'OR2W1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.681 (Fisher's exact test), Q value = 1

Table S703.  Gene #71: 'OR2W1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
OR2W1 MUTATED 2 3 1 4
OR2W1 WILD-TYPE 44 55 25 34
'OR2W1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.279 (Fisher's exact test), Q value = 1

Table S704.  Gene #71: 'OR2W1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 38 70 60
OR2W1 MUTATED 4 2 4
OR2W1 WILD-TYPE 34 68 56
'OR2W1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.429 (Fisher's exact test), Q value = 1

Table S705.  Gene #71: 'OR2W1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 78 102
OR2W1 MUTATED 5 8 7
OR2W1 WILD-TYPE 93 70 95
'OR2W1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.784 (Fisher's exact test), Q value = 1

Table S706.  Gene #71: 'OR2W1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 134 71
OR2W1 MUTATED 4 10 6
OR2W1 WILD-TYPE 69 124 65
'OR2W1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.487 (Fisher's exact test), Q value = 1

Table S707.  Gene #71: 'OR2W1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 117 85
OR2W1 MUTATED 5 6 8
OR2W1 WILD-TYPE 62 111 77
'OR2W1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.709 (Fisher's exact test), Q value = 1

Table S708.  Gene #71: 'OR2W1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 160 82
OR2W1 MUTATED 2 10 7
OR2W1 WILD-TYPE 25 150 75
'OR2W1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.719 (Fisher's exact test), Q value = 1

Table S709.  Gene #71: 'OR2W1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 82 110 77
OR2W1 MUTATED 5 7 7
OR2W1 WILD-TYPE 77 103 70
'OR2W1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.954 (Fisher's exact test), Q value = 1

Table S710.  Gene #71: 'OR2W1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 79 45 120
OR2W1 MUTATED 2 6 3 8
OR2W1 WILD-TYPE 23 73 42 112
'LRTM1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.873 (Fisher's exact test), Q value = 1

Table S711.  Gene #72: 'LRTM1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
LRTM1 MUTATED 6 5 5 10
LRTM1 WILD-TYPE 76 46 42 88
'LRTM1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.315 (Fisher's exact test), Q value = 1

Table S712.  Gene #72: 'LRTM1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 95 106
LRTM1 MUTATED 4 11 11
LRTM1 WILD-TYPE 73 84 95
'LRTM1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.739 (Fisher's exact test), Q value = 1

Table S713.  Gene #72: 'LRTM1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
LRTM1 MUTATED 7 6 2 3
LRTM1 WILD-TYPE 39 52 24 35
'LRTM1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.846 (Fisher's exact test), Q value = 1

Table S714.  Gene #72: 'LRTM1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 38 70 60
LRTM1 MUTATED 5 7 6
LRTM1 WILD-TYPE 33 63 54
'LRTM1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S715.  Gene #72: 'LRTM1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 78 102
LRTM1 MUTATED 9 7 10
LRTM1 WILD-TYPE 89 71 92
'LRTM1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.969 (Fisher's exact test), Q value = 1

Table S716.  Gene #72: 'LRTM1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 134 71
LRTM1 MUTATED 7 12 7
LRTM1 WILD-TYPE 66 122 64
'LRTM1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.453 (Fisher's exact test), Q value = 1

Table S717.  Gene #72: 'LRTM1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 117 85
LRTM1 MUTATED 5 14 6
LRTM1 WILD-TYPE 62 103 79
'LRTM1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.442 (Fisher's exact test), Q value = 1

Table S718.  Gene #72: 'LRTM1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 160 82
LRTM1 MUTATED 4 15 6
LRTM1 WILD-TYPE 23 145 76
'LRTM1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.759 (Fisher's exact test), Q value = 1

Table S719.  Gene #72: 'LRTM1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 82 110 77
LRTM1 MUTATED 7 12 6
LRTM1 WILD-TYPE 75 98 71
'LRTM1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.74 (Fisher's exact test), Q value = 1

Table S720.  Gene #72: 'LRTM1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 79 45 120
LRTM1 MUTATED 3 6 3 13
LRTM1 WILD-TYPE 22 73 42 107
'SLC10A2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.888 (Fisher's exact test), Q value = 1

Table S721.  Gene #73: 'SLC10A2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
SLC10A2 MUTATED 8 3 4 9
SLC10A2 WILD-TYPE 74 48 43 89
'SLC10A2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0633 (Fisher's exact test), Q value = 1

Table S722.  Gene #73: 'SLC10A2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 95 106
SLC10A2 MUTATED 2 11 11
SLC10A2 WILD-TYPE 75 84 95
'SLC10A2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.112 (Fisher's exact test), Q value = 1

Table S723.  Gene #73: 'SLC10A2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
SLC10A2 MUTATED 7 2 1 5
SLC10A2 WILD-TYPE 39 56 25 33
'SLC10A2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.402 (Fisher's exact test), Q value = 1

Table S724.  Gene #73: 'SLC10A2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 38 70 60
SLC10A2 MUTATED 5 4 6
SLC10A2 WILD-TYPE 33 66 54
'SLC10A2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.256 (Fisher's exact test), Q value = 1

Table S725.  Gene #73: 'SLC10A2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 78 102
SLC10A2 MUTATED 5 9 10
SLC10A2 WILD-TYPE 93 69 92
'SLC10A2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.239 (Fisher's exact test), Q value = 1

Table S726.  Gene #73: 'SLC10A2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 134 71
SLC10A2 MUTATED 3 13 8
SLC10A2 WILD-TYPE 70 121 63
'SLC10A2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.566 (Fisher's exact test), Q value = 1

Table S727.  Gene #73: 'SLC10A2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 117 85
SLC10A2 MUTATED 7 10 5
SLC10A2 WILD-TYPE 60 107 80
'SLC10A2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0837 (Fisher's exact test), Q value = 1

Table S728.  Gene #73: 'SLC10A2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 160 82
SLC10A2 MUTATED 5 13 4
SLC10A2 WILD-TYPE 22 147 78
'SLC10A2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.507 (Fisher's exact test), Q value = 1

Table S729.  Gene #73: 'SLC10A2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 82 110 77
SLC10A2 MUTATED 9 7 6
SLC10A2 WILD-TYPE 73 103 71
'SLC10A2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.155 (Fisher's exact test), Q value = 1

Table S730.  Gene #73: 'SLC10A2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 79 45 120
SLC10A2 MUTATED 5 4 3 10
SLC10A2 WILD-TYPE 20 75 42 110
'NF1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.414 (Fisher's exact test), Q value = 1

Table S731.  Gene #74: 'NF1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
NF1 MUTATED 15 4 6 13
NF1 WILD-TYPE 67 47 41 85
'NF1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.407 (Fisher's exact test), Q value = 1

Table S732.  Gene #74: 'NF1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 95 106
NF1 MUTATED 11 16 11
NF1 WILD-TYPE 66 79 95
'NF1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.536 (Fisher's exact test), Q value = 1

Table S733.  Gene #74: 'NF1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
NF1 MUTATED 6 9 3 9
NF1 WILD-TYPE 40 49 23 29
'NF1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.291 (Fisher's exact test), Q value = 1

Table S734.  Gene #74: 'NF1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 38 70 60
NF1 MUTATED 4 15 8
NF1 WILD-TYPE 34 55 52
'NF1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.649 (Fisher's exact test), Q value = 1

Table S735.  Gene #74: 'NF1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 78 102
NF1 MUTATED 11 11 16
NF1 WILD-TYPE 87 67 86
'NF1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.245 (Fisher's exact test), Q value = 1

Table S736.  Gene #74: 'NF1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 134 71
NF1 MUTATED 8 16 14
NF1 WILD-TYPE 65 118 57
'NF1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.217 (Fisher's exact test), Q value = 1

Table S737.  Gene #74: 'NF1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 117 85
NF1 MUTATED 13 17 8
NF1 WILD-TYPE 54 100 77
'NF1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.676 (Fisher's exact test), Q value = 1

Table S738.  Gene #74: 'NF1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 160 82
NF1 MUTATED 5 23 10
NF1 WILD-TYPE 22 137 72
'NF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.13 (Fisher's exact test), Q value = 1

Table S739.  Gene #74: 'NF1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 82 110 77
NF1 MUTATED 15 17 6
NF1 WILD-TYPE 67 93 71
'NF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.458 (Fisher's exact test), Q value = 1

Table S740.  Gene #74: 'NF1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 79 45 120
NF1 MUTATED 4 9 4 21
NF1 WILD-TYPE 21 70 41 99
'STK31 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.3 (Fisher's exact test), Q value = 1

Table S741.  Gene #75: 'STK31 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
STK31 MUTATED 9 7 3 17
STK31 WILD-TYPE 73 44 44 81
'STK31 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0984 (Fisher's exact test), Q value = 1

Table S742.  Gene #75: 'STK31 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 95 106
STK31 MUTATED 5 13 18
STK31 WILD-TYPE 72 82 88
'STK31 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.365 (Fisher's exact test), Q value = 1

Table S743.  Gene #75: 'STK31 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
STK31 MUTATED 6 8 2 9
STK31 WILD-TYPE 40 50 24 29
'STK31 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.637 (Fisher's exact test), Q value = 1

Table S744.  Gene #75: 'STK31 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 38 70 60
STK31 MUTATED 5 9 11
STK31 WILD-TYPE 33 61 49
'STK31 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00378 (Fisher's exact test), Q value = 1

Table S745.  Gene #75: 'STK31 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 78 102
STK31 MUTATED 5 17 14
STK31 WILD-TYPE 93 61 88

Figure S28.  Get High-res Image Gene #75: 'STK31 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'STK31 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00816 (Fisher's exact test), Q value = 1

Table S746.  Gene #75: 'STK31 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 134 71
STK31 MUTATED 3 25 8
STK31 WILD-TYPE 70 109 63

Figure S29.  Get High-res Image Gene #75: 'STK31 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'STK31 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.529 (Fisher's exact test), Q value = 1

Table S747.  Gene #75: 'STK31 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 117 85
STK31 MUTATED 11 14 9
STK31 WILD-TYPE 56 103 76
'STK31 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.947 (Fisher's exact test), Q value = 1

Table S748.  Gene #75: 'STK31 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 160 82
STK31 MUTATED 3 20 11
STK31 WILD-TYPE 24 140 71
'STK31 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.719 (Fisher's exact test), Q value = 1

Table S749.  Gene #75: 'STK31 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 82 110 77
STK31 MUTATED 12 14 8
STK31 WILD-TYPE 70 96 69
'STK31 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0591 (Fisher's exact test), Q value = 1

Table S750.  Gene #75: 'STK31 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 79 45 120
STK31 MUTATED 2 11 1 20
STK31 WILD-TYPE 23 68 44 100
'ANGPT1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.778 (Fisher's exact test), Q value = 1

Table S751.  Gene #76: 'ANGPT1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
ANGPT1 MUTATED 11 6 4 9
ANGPT1 WILD-TYPE 71 45 43 89
'ANGPT1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0794 (Fisher's exact test), Q value = 1

Table S752.  Gene #76: 'ANGPT1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 95 106
ANGPT1 MUTATED 6 16 8
ANGPT1 WILD-TYPE 71 79 98
'ANGPT1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.477 (Fisher's exact test), Q value = 1

Table S753.  Gene #76: 'ANGPT1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
ANGPT1 MUTATED 6 3 1 3
ANGPT1 WILD-TYPE 40 55 25 35
'ANGPT1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S754.  Gene #76: 'ANGPT1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 38 70 60
ANGPT1 MUTATED 3 5 5
ANGPT1 WILD-TYPE 35 65 55
'ANGPT1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.863 (Fisher's exact test), Q value = 1

Table S755.  Gene #76: 'ANGPT1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 78 102
ANGPT1 MUTATED 12 8 10
ANGPT1 WILD-TYPE 86 70 92
'ANGPT1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.362 (Fisher's exact test), Q value = 1

Table S756.  Gene #76: 'ANGPT1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 134 71
ANGPT1 MUTATED 5 18 7
ANGPT1 WILD-TYPE 68 116 64
'ANGPT1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.736 (Fisher's exact test), Q value = 1

Table S757.  Gene #76: 'ANGPT1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 117 85
ANGPT1 MUTATED 6 12 11
ANGPT1 WILD-TYPE 61 105 74
'ANGPT1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S758.  Gene #76: 'ANGPT1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 160 82
ANGPT1 MUTATED 3 17 9
ANGPT1 WILD-TYPE 24 143 73
'ANGPT1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.908 (Fisher's exact test), Q value = 1

Table S759.  Gene #76: 'ANGPT1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 82 110 77
ANGPT1 MUTATED 9 11 9
ANGPT1 WILD-TYPE 73 99 68
'ANGPT1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.946 (Fisher's exact test), Q value = 1

Table S760.  Gene #76: 'ANGPT1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 79 45 120
ANGPT1 MUTATED 3 9 5 12
ANGPT1 WILD-TYPE 22 70 40 108
'C18ORF26 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.58 (Fisher's exact test), Q value = 1

Table S761.  Gene #77: 'C18ORF26 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
C18ORF26 MUTATED 7 3 1 6
C18ORF26 WILD-TYPE 75 48 46 92
'C18ORF26 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.785 (Fisher's exact test), Q value = 1

Table S762.  Gene #77: 'C18ORF26 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 95 106
C18ORF26 MUTATED 4 5 8
C18ORF26 WILD-TYPE 73 90 98
'C18ORF26 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.579 (Fisher's exact test), Q value = 1

Table S763.  Gene #77: 'C18ORF26 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
C18ORF26 MUTATED 6 4 1 3
C18ORF26 WILD-TYPE 40 54 25 35
'C18ORF26 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.256 (Fisher's exact test), Q value = 1

Table S764.  Gene #77: 'C18ORF26 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 38 70 60
C18ORF26 MUTATED 4 3 7
C18ORF26 WILD-TYPE 34 67 53
'C18ORF26 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.147 (Fisher's exact test), Q value = 1

Table S765.  Gene #77: 'C18ORF26 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 78 102
C18ORF26 MUTATED 3 8 6
C18ORF26 WILD-TYPE 95 70 96
'C18ORF26 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.29 (Fisher's exact test), Q value = 1

Table S766.  Gene #77: 'C18ORF26 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 134 71
C18ORF26 MUTATED 2 11 4
C18ORF26 WILD-TYPE 71 123 67
'C18ORF26 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.897 (Fisher's exact test), Q value = 1

Table S767.  Gene #77: 'C18ORF26 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 117 85
C18ORF26 MUTATED 3 8 5
C18ORF26 WILD-TYPE 64 109 80
'C18ORF26 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.353 (Fisher's exact test), Q value = 1

Table S768.  Gene #77: 'C18ORF26 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 160 82
C18ORF26 MUTATED 0 12 4
C18ORF26 WILD-TYPE 27 148 78
'C18ORF26 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.229 (Fisher's exact test), Q value = 1

Table S769.  Gene #77: 'C18ORF26 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 82 110 77
C18ORF26 MUTATED 2 9 5
C18ORF26 WILD-TYPE 80 101 72
'C18ORF26 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.364 (Fisher's exact test), Q value = 1

Table S770.  Gene #77: 'C18ORF26 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 79 45 120
C18ORF26 MUTATED 0 3 4 9
C18ORF26 WILD-TYPE 25 76 41 111
'VSNL1 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S771.  Gene #78: 'VSNL1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
VSNL1 MUTATED 1 1 0 2
VSNL1 WILD-TYPE 81 50 47 96
'VSNL1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.46 (Fisher's exact test), Q value = 1

Table S772.  Gene #78: 'VSNL1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 95 106
VSNL1 MUTATED 0 1 3
VSNL1 WILD-TYPE 77 94 103
'VSNL1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.151 (Fisher's exact test), Q value = 1

Table S773.  Gene #78: 'VSNL1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
VSNL1 MUTATED 2 0 1 0
VSNL1 WILD-TYPE 44 58 25 38
'VSNL1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.448 (Fisher's exact test), Q value = 1

Table S774.  Gene #78: 'VSNL1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 38 70 60
VSNL1 MUTATED 1 2 0
VSNL1 WILD-TYPE 37 68 60
'VSNL1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.326 (Fisher's exact test), Q value = 1

Table S775.  Gene #78: 'VSNL1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 78 102
VSNL1 MUTATED 0 2 2
VSNL1 WILD-TYPE 98 76 100
'VSNL1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.28 (Fisher's exact test), Q value = 1

Table S776.  Gene #78: 'VSNL1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 134 71
VSNL1 MUTATED 0 2 2
VSNL1 WILD-TYPE 73 132 69
'VSNL1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.286 (Fisher's exact test), Q value = 1

Table S777.  Gene #78: 'VSNL1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 117 85
VSNL1 MUTATED 2 2 0
VSNL1 WILD-TYPE 65 115 85
'VSNL1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S778.  Gene #78: 'VSNL1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 160 82
VSNL1 MUTATED 0 3 1
VSNL1 WILD-TYPE 27 157 81
'VSNL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.474 (Fisher's exact test), Q value = 1

Table S779.  Gene #78: 'VSNL1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 82 110 77
VSNL1 MUTATED 1 3 0
VSNL1 WILD-TYPE 81 107 77
'VSNL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.881 (Fisher's exact test), Q value = 1

Table S780.  Gene #78: 'VSNL1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 79 45 120
VSNL1 MUTATED 0 1 0 3
VSNL1 WILD-TYPE 25 78 45 117
'CRB1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0843 (Fisher's exact test), Q value = 1

Table S781.  Gene #79: 'CRB1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
CRB1 MUTATED 19 10 3 20
CRB1 WILD-TYPE 63 41 44 78
'CRB1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.732 (Fisher's exact test), Q value = 1

Table S782.  Gene #79: 'CRB1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 95 106
CRB1 MUTATED 12 19 21
CRB1 WILD-TYPE 65 76 85
'CRB1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.506 (Fisher's exact test), Q value = 1

Table S783.  Gene #79: 'CRB1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
CRB1 MUTATED 9 8 7 8
CRB1 WILD-TYPE 37 50 19 30
'CRB1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.941 (Fisher's exact test), Q value = 1

Table S784.  Gene #79: 'CRB1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 38 70 60
CRB1 MUTATED 8 13 11
CRB1 WILD-TYPE 30 57 49
'CRB1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0516 (Fisher's exact test), Q value = 1

Table S785.  Gene #79: 'CRB1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 78 102
CRB1 MUTATED 11 17 24
CRB1 WILD-TYPE 87 61 78
'CRB1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0532 (Fisher's exact test), Q value = 1

Table S786.  Gene #79: 'CRB1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 134 71
CRB1 MUTATED 7 29 16
CRB1 WILD-TYPE 66 105 55
'CRB1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.244 (Fisher's exact test), Q value = 1

Table S787.  Gene #79: 'CRB1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 117 85
CRB1 MUTATED 12 26 11
CRB1 WILD-TYPE 55 91 74
'CRB1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.074 (Fisher's exact test), Q value = 1

Table S788.  Gene #79: 'CRB1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 160 82
CRB1 MUTATED 2 36 11
CRB1 WILD-TYPE 25 124 71
'CRB1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0662 (Fisher's exact test), Q value = 1

Table S789.  Gene #79: 'CRB1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 82 110 77
CRB1 MUTATED 15 26 8
CRB1 WILD-TYPE 67 84 69
'CRB1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.251 (Fisher's exact test), Q value = 1

Table S790.  Gene #79: 'CRB1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 79 45 120
CRB1 MUTATED 2 11 9 27
CRB1 WILD-TYPE 23 68 36 93
'PREX2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.897 (Fisher's exact test), Q value = 1

Table S791.  Gene #80: 'PREX2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
PREX2 MUTATED 22 13 10 23
PREX2 WILD-TYPE 60 38 37 75
'PREX2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0385 (Fisher's exact test), Q value = 1

Table S792.  Gene #80: 'PREX2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 95 106
PREX2 MUTATED 16 32 20
PREX2 WILD-TYPE 61 63 86

Figure S30.  Get High-res Image Gene #80: 'PREX2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'PREX2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.709 (Fisher's exact test), Q value = 1

Table S793.  Gene #80: 'PREX2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
PREX2 MUTATED 13 12 8 10
PREX2 WILD-TYPE 33 46 18 28
'PREX2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.551 (Fisher's exact test), Q value = 1

Table S794.  Gene #80: 'PREX2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 38 70 60
PREX2 MUTATED 8 21 14
PREX2 WILD-TYPE 30 49 46
'PREX2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.461 (Fisher's exact test), Q value = 1

Table S795.  Gene #80: 'PREX2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 78 102
PREX2 MUTATED 23 23 22
PREX2 WILD-TYPE 75 55 80
'PREX2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.838 (Fisher's exact test), Q value = 1

Table S796.  Gene #80: 'PREX2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 134 71
PREX2 MUTATED 16 34 18
PREX2 WILD-TYPE 57 100 53
'PREX2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.911 (Fisher's exact test), Q value = 1

Table S797.  Gene #80: 'PREX2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 117 85
PREX2 MUTATED 17 27 19
PREX2 WILD-TYPE 50 90 66
'PREX2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.1 (Fisher's exact test), Q value = 1

Table S798.  Gene #80: 'PREX2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 160 82
PREX2 MUTATED 9 41 13
PREX2 WILD-TYPE 18 119 69
'PREX2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.917 (Fisher's exact test), Q value = 1

Table S799.  Gene #80: 'PREX2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 82 110 77
PREX2 MUTATED 19 27 17
PREX2 WILD-TYPE 63 83 60
'PREX2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0307 (Fisher's exact test), Q value = 1

Table S800.  Gene #80: 'PREX2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 79 45 120
PREX2 MUTATED 8 10 10 35
PREX2 WILD-TYPE 17 69 35 85

Figure S31.  Get High-res Image Gene #80: 'PREX2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'SPANXN5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.673 (Fisher's exact test), Q value = 1

Table S801.  Gene #81: 'SPANXN5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
SPANXN5 MUTATED 1 1 2 4
SPANXN5 WILD-TYPE 81 50 45 94
'SPANXN5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.157 (Fisher's exact test), Q value = 1

Table S802.  Gene #81: 'SPANXN5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 95 106
SPANXN5 MUTATED 0 3 5
SPANXN5 WILD-TYPE 77 92 101
'SPANXN5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.332 (Fisher's exact test), Q value = 1

Table S803.  Gene #81: 'SPANXN5 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
SPANXN5 MUTATED 2 0 1 1
SPANXN5 WILD-TYPE 44 58 25 37
'SPANXN5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.445 (Fisher's exact test), Q value = 1

Table S804.  Gene #81: 'SPANXN5 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 38 70 60
SPANXN5 MUTATED 2 1 1
SPANXN5 WILD-TYPE 36 69 59
'SPANXN5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.902 (Fisher's exact test), Q value = 1

Table S805.  Gene #81: 'SPANXN5 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 78 102
SPANXN5 MUTATED 2 3 3
SPANXN5 WILD-TYPE 96 75 99
'SPANXN5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.454 (Fisher's exact test), Q value = 1

Table S806.  Gene #81: 'SPANXN5 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 134 71
SPANXN5 MUTATED 1 6 1
SPANXN5 WILD-TYPE 72 128 70
'SPANXN5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.812 (Fisher's exact test), Q value = 1

Table S807.  Gene #81: 'SPANXN5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 117 85
SPANXN5 MUTATED 1 4 3
SPANXN5 WILD-TYPE 66 113 82
'SPANXN5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.761 (Fisher's exact test), Q value = 1

Table S808.  Gene #81: 'SPANXN5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 160 82
SPANXN5 MUTATED 0 6 2
SPANXN5 WILD-TYPE 27 154 80
'SPANXN5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.604 (Fisher's exact test), Q value = 1

Table S809.  Gene #81: 'SPANXN5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 82 110 77
SPANXN5 MUTATED 1 4 3
SPANXN5 WILD-TYPE 81 106 74
'SPANXN5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.863 (Fisher's exact test), Q value = 1

Table S810.  Gene #81: 'SPANXN5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 79 45 120
SPANXN5 MUTATED 0 2 2 4
SPANXN5 WILD-TYPE 25 77 43 116
'NMS MUTATION STATUS' versus 'CN_CNMF'

P value = 0.901 (Fisher's exact test), Q value = 1

Table S811.  Gene #82: 'NMS MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
NMS MUTATED 3 2 2 6
NMS WILD-TYPE 79 49 45 92
'NMS MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.23 (Fisher's exact test), Q value = 1

Table S812.  Gene #82: 'NMS MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 95 106
NMS MUTATED 1 5 7
NMS WILD-TYPE 76 90 99
'NMS MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.311 (Fisher's exact test), Q value = 1

Table S813.  Gene #82: 'NMS MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
NMS MUTATED 4 1 2 3
NMS WILD-TYPE 42 57 24 35
'NMS MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.649 (Fisher's exact test), Q value = 1

Table S814.  Gene #82: 'NMS MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 38 70 60
NMS MUTATED 2 3 5
NMS WILD-TYPE 36 67 55
'NMS MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0335 (Fisher's exact test), Q value = 1

Table S815.  Gene #82: 'NMS MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 78 102
NMS MUTATED 3 8 2
NMS WILD-TYPE 95 70 100

Figure S32.  Get High-res Image Gene #82: 'NMS MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'NMS MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.267 (Fisher's exact test), Q value = 1

Table S816.  Gene #82: 'NMS MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 134 71
NMS MUTATED 3 9 1
NMS WILD-TYPE 70 125 70
'NMS MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.934 (Fisher's exact test), Q value = 1

Table S817.  Gene #82: 'NMS MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 117 85
NMS MUTATED 3 5 5
NMS WILD-TYPE 64 112 80
'NMS MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.909 (Fisher's exact test), Q value = 1

Table S818.  Gene #82: 'NMS MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 160 82
NMS MUTATED 1 9 3
NMS WILD-TYPE 26 151 79
'NMS MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.822 (Fisher's exact test), Q value = 1

Table S819.  Gene #82: 'NMS MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 82 110 77
NMS MUTATED 5 5 3
NMS WILD-TYPE 77 105 74
'NMS MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.971 (Fisher's exact test), Q value = 1

Table S820.  Gene #82: 'NMS MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 79 45 120
NMS MUTATED 1 3 2 7
NMS WILD-TYPE 24 76 43 113
'RERG MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S821.  Gene #83: 'RERG MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
RERG MUTATED 3 2 2 4
RERG WILD-TYPE 79 49 45 94
'RERG MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.861 (Fisher's exact test), Q value = 1

Table S822.  Gene #83: 'RERG MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 95 106
RERG MUTATED 2 4 5
RERG WILD-TYPE 75 91 101
'RERG MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.691 (Fisher's exact test), Q value = 1

Table S823.  Gene #83: 'RERG MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
RERG MUTATED 1 3 1 3
RERG WILD-TYPE 45 55 25 35
'RERG MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.267 (Fisher's exact test), Q value = 1

Table S824.  Gene #83: 'RERG MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 38 70 60
RERG MUTATED 0 5 3
RERG WILD-TYPE 38 65 57
'RERG MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.692 (Fisher's exact test), Q value = 1

Table S825.  Gene #83: 'RERG MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 78 102
RERG MUTATED 4 4 3
RERG WILD-TYPE 94 74 99
'RERG MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.924 (Fisher's exact test), Q value = 1

Table S826.  Gene #83: 'RERG MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 134 71
RERG MUTATED 3 6 2
RERG WILD-TYPE 70 128 69
'RERG MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0667 (Fisher's exact test), Q value = 1

Table S827.  Gene #83: 'RERG MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 117 85
RERG MUTATED 0 8 3
RERG WILD-TYPE 67 109 82
'RERG MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.318 (Fisher's exact test), Q value = 1

Table S828.  Gene #83: 'RERG MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 160 82
RERG MUTATED 0 9 2
RERG WILD-TYPE 27 151 80
'RERG MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.191 (Fisher's exact test), Q value = 1

Table S829.  Gene #83: 'RERG MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 82 110 77
RERG MUTATED 1 7 3
RERG WILD-TYPE 81 103 74
'RERG MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.432 (Fisher's exact test), Q value = 1

Table S830.  Gene #83: 'RERG MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 79 45 120
RERG MUTATED 0 2 1 8
RERG WILD-TYPE 25 77 44 112
'GLYATL2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.628 (Fisher's exact test), Q value = 1

Table S831.  Gene #84: 'GLYATL2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
GLYATL2 MUTATED 6 4 3 12
GLYATL2 WILD-TYPE 76 47 44 86
'GLYATL2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.158 (Fisher's exact test), Q value = 1

Table S832.  Gene #84: 'GLYATL2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 95 106
GLYATL2 MUTATED 3 11 11
GLYATL2 WILD-TYPE 74 84 95
'GLYATL2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.832 (Fisher's exact test), Q value = 1

Table S833.  Gene #84: 'GLYATL2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
GLYATL2 MUTATED 5 4 2 2
GLYATL2 WILD-TYPE 41 54 24 36
'GLYATL2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S834.  Gene #84: 'GLYATL2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 38 70 60
GLYATL2 MUTATED 3 5 5
GLYATL2 WILD-TYPE 35 65 55
'GLYATL2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.344 (Fisher's exact test), Q value = 1

Table S835.  Gene #84: 'GLYATL2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 78 102
GLYATL2 MUTATED 10 9 6
GLYATL2 WILD-TYPE 88 69 96
'GLYATL2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.252 (Fisher's exact test), Q value = 1

Table S836.  Gene #84: 'GLYATL2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 134 71
GLYATL2 MUTATED 7 15 3
GLYATL2 WILD-TYPE 66 119 68
'GLYATL2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.474 (Fisher's exact test), Q value = 1

Table S837.  Gene #84: 'GLYATL2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 117 85
GLYATL2 MUTATED 8 8 7
GLYATL2 WILD-TYPE 59 109 78
'GLYATL2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.599 (Fisher's exact test), Q value = 1

Table S838.  Gene #84: 'GLYATL2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 160 82
GLYATL2 MUTATED 2 12 9
GLYATL2 WILD-TYPE 25 148 73
'GLYATL2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.153 (Fisher's exact test), Q value = 1

Table S839.  Gene #84: 'GLYATL2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 82 110 77
GLYATL2 MUTATED 11 6 6
GLYATL2 WILD-TYPE 71 104 71
'GLYATL2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.943 (Fisher's exact test), Q value = 1

Table S840.  Gene #84: 'GLYATL2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 79 45 120
GLYATL2 MUTATED 2 8 3 10
GLYATL2 WILD-TYPE 23 71 42 110
'POTEG MUTATION STATUS' versus 'CN_CNMF'

P value = 0.129 (Fisher's exact test), Q value = 1

Table S841.  Gene #85: 'POTEG MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
POTEG MUTATED 15 5 4 7
POTEG WILD-TYPE 67 46 43 91
'POTEG MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0123 (Fisher's exact test), Q value = 1

Table S842.  Gene #85: 'POTEG MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 95 106
POTEG MUTATED 7 18 6
POTEG WILD-TYPE 70 77 100

Figure S33.  Get High-res Image Gene #85: 'POTEG MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'POTEG MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.339 (Fisher's exact test), Q value = 1

Table S843.  Gene #85: 'POTEG MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
POTEG MUTATED 3 5 2 7
POTEG WILD-TYPE 43 53 24 31
'POTEG MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.128 (Fisher's exact test), Q value = 1

Table S844.  Gene #85: 'POTEG MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 38 70 60
POTEG MUTATED 2 5 10
POTEG WILD-TYPE 36 65 50
'POTEG MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.53 (Fisher's exact test), Q value = 1

Table S845.  Gene #85: 'POTEG MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 78 102
POTEG MUTATED 12 6 13
POTEG WILD-TYPE 86 72 89
'POTEG MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0677 (Fisher's exact test), Q value = 1

Table S846.  Gene #85: 'POTEG MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 134 71
POTEG MUTATED 8 10 13
POTEG WILD-TYPE 65 124 58
'POTEG MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.205 (Fisher's exact test), Q value = 1

Table S847.  Gene #85: 'POTEG MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 117 85
POTEG MUTATED 4 17 9
POTEG WILD-TYPE 63 100 76
'POTEG MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.243 (Fisher's exact test), Q value = 1

Table S848.  Gene #85: 'POTEG MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 160 82
POTEG MUTATED 1 22 7
POTEG WILD-TYPE 26 138 75
'POTEG MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.06 (Fisher's exact test), Q value = 1

Table S849.  Gene #85: 'POTEG MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 82 110 77
POTEG MUTATED 4 17 9
POTEG WILD-TYPE 78 93 68
'POTEG MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.524 (Fisher's exact test), Q value = 1

Table S850.  Gene #85: 'POTEG MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 79 45 120
POTEG MUTATED 1 7 6 16
POTEG WILD-TYPE 24 72 39 104
'ACD MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0491 (Fisher's exact test), Q value = 1

Table S851.  Gene #86: 'ACD MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
ACD MUTATED 0 2 4 4
ACD WILD-TYPE 82 49 43 94

Figure S34.  Get High-res Image Gene #86: 'ACD MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ACD MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S852.  Gene #86: 'ACD MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 95 106
ACD MUTATED 3 3 4
ACD WILD-TYPE 74 92 102
'ACD MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.956 (Fisher's exact test), Q value = 1

Table S853.  Gene #86: 'ACD MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
ACD MUTATED 3 3 1 1
ACD WILD-TYPE 43 55 25 37
'ACD MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.373 (Fisher's exact test), Q value = 1

Table S854.  Gene #86: 'ACD MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 38 70 60
ACD MUTATED 1 2 5
ACD WILD-TYPE 37 68 55
'ACD MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.662 (Fisher's exact test), Q value = 1

Table S855.  Gene #86: 'ACD MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 78 102
ACD MUTATED 5 2 3
ACD WILD-TYPE 93 76 99
'ACD MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.272 (Fisher's exact test), Q value = 1

Table S856.  Gene #86: 'ACD MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 134 71
ACD MUTATED 5 3 2
ACD WILD-TYPE 68 131 69
'ACD MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.153 (Fisher's exact test), Q value = 1

Table S857.  Gene #86: 'ACD MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 117 85
ACD MUTATED 5 2 3
ACD WILD-TYPE 62 115 82
'ACD MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.149 (Fisher's exact test), Q value = 1

Table S858.  Gene #86: 'ACD MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 160 82
ACD MUTATED 0 4 6
ACD WILD-TYPE 27 156 76
'ACD MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.722 (Fisher's exact test), Q value = 1

Table S859.  Gene #86: 'ACD MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 82 110 77
ACD MUTATED 4 3 3
ACD WILD-TYPE 78 107 74
'ACD MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.157 (Fisher's exact test), Q value = 1

Table S860.  Gene #86: 'ACD MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 79 45 120
ACD MUTATED 0 6 0 4
ACD WILD-TYPE 25 73 45 116
'AREG MUTATION STATUS' versus 'CN_CNMF'

P value = 0.682 (Fisher's exact test), Q value = 1

Table S861.  Gene #87: 'AREG MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
AREG MUTATED 3 0 1 3
AREG WILD-TYPE 79 51 46 95
'AREG MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.893 (Fisher's exact test), Q value = 1

Table S862.  Gene #87: 'AREG MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 95 106
AREG MUTATED 2 3 2
AREG WILD-TYPE 75 92 104
'AREG MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.708 (Fisher's exact test), Q value = 1

Table S863.  Gene #87: 'AREG MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
AREG MUTATED 1 1 1 2
AREG WILD-TYPE 45 57 25 36
'AREG MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.537 (Fisher's exact test), Q value = 1

Table S864.  Gene #87: 'AREG MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 38 70 60
AREG MUTATED 1 1 3
AREG WILD-TYPE 37 69 57
'AREG MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.896 (Fisher's exact test), Q value = 1

Table S865.  Gene #87: 'AREG MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 78 102
AREG MUTATED 3 2 2
AREG WILD-TYPE 95 76 100
'AREG MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.691 (Fisher's exact test), Q value = 1

Table S866.  Gene #87: 'AREG MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 134 71
AREG MUTATED 3 3 1
AREG WILD-TYPE 70 131 70
'AREG MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.795 (Fisher's exact test), Q value = 1

Table S867.  Gene #87: 'AREG MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 117 85
AREG MUTATED 1 3 3
AREG WILD-TYPE 66 114 82
'AREG MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.728 (Fisher's exact test), Q value = 1

Table S868.  Gene #87: 'AREG MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 160 82
AREG MUTATED 0 4 3
AREG WILD-TYPE 27 156 79
'AREG MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.341 (Fisher's exact test), Q value = 1

Table S869.  Gene #87: 'AREG MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 82 110 77
AREG MUTATED 3 1 3
AREG WILD-TYPE 79 109 74
'AREG MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.939 (Fisher's exact test), Q value = 1

Table S870.  Gene #87: 'AREG MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 79 45 120
AREG MUTATED 0 3 1 3
AREG WILD-TYPE 25 76 44 117
'STARD6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.931 (Fisher's exact test), Q value = 1

Table S871.  Gene #88: 'STARD6 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
STARD6 MUTATED 4 2 1 5
STARD6 WILD-TYPE 78 49 46 93
'STARD6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.531 (Fisher's exact test), Q value = 1

Table S872.  Gene #88: 'STARD6 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 95 106
STARD6 MUTATED 2 6 4
STARD6 WILD-TYPE 75 89 102
'STARD6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.374 (Fisher's exact test), Q value = 1

Table S873.  Gene #88: 'STARD6 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
STARD6 MUTATED 2 1 2 3
STARD6 WILD-TYPE 44 57 24 35
'STARD6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.587 (Fisher's exact test), Q value = 1

Table S874.  Gene #88: 'STARD6 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 38 70 60
STARD6 MUTATED 3 3 2
STARD6 WILD-TYPE 35 67 58
'STARD6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.536 (Fisher's exact test), Q value = 1

Table S875.  Gene #88: 'STARD6 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 78 102
STARD6 MUTATED 3 5 4
STARD6 WILD-TYPE 95 73 98
'STARD6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.696 (Fisher's exact test), Q value = 1

Table S876.  Gene #88: 'STARD6 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 134 71
STARD6 MUTATED 4 6 2
STARD6 WILD-TYPE 69 128 69
'STARD6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.311 (Fisher's exact test), Q value = 1

Table S877.  Gene #88: 'STARD6 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 117 85
STARD6 MUTATED 3 3 6
STARD6 WILD-TYPE 64 114 79
'STARD6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0904 (Fisher's exact test), Q value = 1

Table S878.  Gene #88: 'STARD6 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 160 82
STARD6 MUTATED 1 4 7
STARD6 WILD-TYPE 26 156 75
'STARD6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.336 (Fisher's exact test), Q value = 1

Table S879.  Gene #88: 'STARD6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 82 110 77
STARD6 MUTATED 6 3 3
STARD6 WILD-TYPE 76 107 74
'STARD6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0992 (Fisher's exact test), Q value = 1

Table S880.  Gene #88: 'STARD6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 79 45 120
STARD6 MUTATED 1 7 0 4
STARD6 WILD-TYPE 24 72 45 116
'CDK4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.738 (Fisher's exact test), Q value = 1

Table S881.  Gene #89: 'CDK4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
CDK4 MUTATED 3 1 0 3
CDK4 WILD-TYPE 79 50 47 95
'CDK4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.445 (Fisher's exact test), Q value = 1

Table S882.  Gene #89: 'CDK4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 95 106
CDK4 MUTATED 3 1 3
CDK4 WILD-TYPE 74 94 103
'CDK4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0439 (Fisher's exact test), Q value = 1

Table S883.  Gene #89: 'CDK4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
CDK4 MUTATED 2 0 2 0
CDK4 WILD-TYPE 44 58 24 38

Figure S35.  Get High-res Image Gene #89: 'CDK4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'CDK4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.445 (Fisher's exact test), Q value = 1

Table S884.  Gene #89: 'CDK4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 38 70 60
CDK4 MUTATED 2 1 1
CDK4 WILD-TYPE 36 69 59
'CDK4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S885.  Gene #89: 'CDK4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 78 102
CDK4 MUTATED 2 2 3
CDK4 WILD-TYPE 96 76 99
'CDK4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.417 (Fisher's exact test), Q value = 1

Table S886.  Gene #89: 'CDK4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 134 71
CDK4 MUTATED 2 2 3
CDK4 WILD-TYPE 71 132 68
'CDK4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.333 (Fisher's exact test), Q value = 1

Table S887.  Gene #89: 'CDK4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 117 85
CDK4 MUTATED 2 1 3
CDK4 WILD-TYPE 65 116 82
'CDK4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.332 (Fisher's exact test), Q value = 1

Table S888.  Gene #89: 'CDK4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 160 82
CDK4 MUTATED 1 2 3
CDK4 WILD-TYPE 26 158 79
'CDK4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S889.  Gene #89: 'CDK4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 82 110 77
CDK4 MUTATED 2 2 2
CDK4 WILD-TYPE 80 108 75
'CDK4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.344 (Fisher's exact test), Q value = 1

Table S890.  Gene #89: 'CDK4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 79 45 120
CDK4 MUTATED 1 3 1 1
CDK4 WILD-TYPE 24 76 44 119
'PRSS48 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0606 (Fisher's exact test), Q value = 1

Table S891.  Gene #90: 'PRSS48 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
PRSS48 MUTATED 5 0 0 1
PRSS48 WILD-TYPE 77 51 47 97
'PRSS48 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.585 (Fisher's exact test), Q value = 1

Table S892.  Gene #90: 'PRSS48 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 95 106
PRSS48 MUTATED 2 3 1
PRSS48 WILD-TYPE 75 92 105
'PRSS48 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.365 (Fisher's exact test), Q value = 1

Table S893.  Gene #90: 'PRSS48 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
PRSS48 MUTATED 0 1 1 2
PRSS48 WILD-TYPE 46 57 25 36
'PRSS48 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.278 (Fisher's exact test), Q value = 1

Table S894.  Gene #90: 'PRSS48 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 38 70 60
PRSS48 MUTATED 1 3 0
PRSS48 WILD-TYPE 37 67 60
'PRSS48 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00437 (Fisher's exact test), Q value = 1

Table S895.  Gene #90: 'PRSS48 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 78 102
PRSS48 MUTATED 0 0 6
PRSS48 WILD-TYPE 98 78 96

Figure S36.  Get High-res Image Gene #90: 'PRSS48 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'PRSS48 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00671 (Fisher's exact test), Q value = 1

Table S896.  Gene #90: 'PRSS48 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 134 71
PRSS48 MUTATED 0 1 5
PRSS48 WILD-TYPE 73 133 66

Figure S37.  Get High-res Image Gene #90: 'PRSS48 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'PRSS48 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.579 (Fisher's exact test), Q value = 1

Table S897.  Gene #90: 'PRSS48 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 117 85
PRSS48 MUTATED 1 4 1
PRSS48 WILD-TYPE 66 113 84
'PRSS48 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.824 (Fisher's exact test), Q value = 1

Table S898.  Gene #90: 'PRSS48 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 160 82
PRSS48 MUTATED 0 5 1
PRSS48 WILD-TYPE 27 155 81
'PRSS48 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.111 (Fisher's exact test), Q value = 1

Table S899.  Gene #90: 'PRSS48 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 82 110 77
PRSS48 MUTATED 1 5 0
PRSS48 WILD-TYPE 81 105 77
'PRSS48 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.267 (Fisher's exact test), Q value = 1

Table S900.  Gene #90: 'PRSS48 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 79 45 120
PRSS48 MUTATED 0 0 1 5
PRSS48 WILD-TYPE 25 79 44 115
'FAM58A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.811 (Fisher's exact test), Q value = 1

Table S901.  Gene #91: 'FAM58A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
FAM58A MUTATED 2 0 1 2
FAM58A WILD-TYPE 80 51 46 96
'FAM58A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.741 (Fisher's exact test), Q value = 1

Table S902.  Gene #91: 'FAM58A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 95 106
FAM58A MUTATED 1 1 3
FAM58A WILD-TYPE 76 94 103
'FAM58A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.91 (Fisher's exact test), Q value = 1

Table S903.  Gene #91: 'FAM58A MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
FAM58A MUTATED 1 1 1 1
FAM58A WILD-TYPE 45 57 25 37
'FAM58A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.547 (Fisher's exact test), Q value = 1

Table S904.  Gene #91: 'FAM58A MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 38 70 60
FAM58A MUTATED 0 3 1
FAM58A WILD-TYPE 38 67 59
'FAM58A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.164 (Fisher's exact test), Q value = 1

Table S905.  Gene #91: 'FAM58A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 78 102
FAM58A MUTATED 0 3 2
FAM58A WILD-TYPE 98 75 100
'FAM58A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.525 (Fisher's exact test), Q value = 1

Table S906.  Gene #91: 'FAM58A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 134 71
FAM58A MUTATED 0 3 2
FAM58A WILD-TYPE 73 131 69
'FAM58A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.856 (Fisher's exact test), Q value = 1

Table S907.  Gene #91: 'FAM58A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 117 85
FAM58A MUTATED 1 3 1
FAM58A WILD-TYPE 66 114 84
'FAM58A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.281 (Fisher's exact test), Q value = 1

Table S908.  Gene #91: 'FAM58A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 160 82
FAM58A MUTATED 0 5 0
FAM58A WILD-TYPE 27 155 82
'FAM58A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.231 (Fisher's exact test), Q value = 1

Table S909.  Gene #91: 'FAM58A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 82 110 77
FAM58A MUTATED 1 4 0
FAM58A WILD-TYPE 81 106 77
'FAM58A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.363 (Fisher's exact test), Q value = 1

Table S910.  Gene #91: 'FAM58A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 79 45 120
FAM58A MUTATED 0 0 1 4
FAM58A WILD-TYPE 25 79 44 116
'COL4A4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0753 (Fisher's exact test), Q value = 1

Table S911.  Gene #92: 'COL4A4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
COL4A4 MUTATED 22 8 9 33
COL4A4 WILD-TYPE 60 43 38 65
'COL4A4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.138 (Fisher's exact test), Q value = 1

Table S912.  Gene #92: 'COL4A4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 95 106
COL4A4 MUTATED 14 25 33
COL4A4 WILD-TYPE 63 70 73
'COL4A4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.47 (Fisher's exact test), Q value = 1

Table S913.  Gene #92: 'COL4A4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
COL4A4 MUTATED 14 12 5 12
COL4A4 WILD-TYPE 32 46 21 26
'COL4A4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.924 (Fisher's exact test), Q value = 1

Table S914.  Gene #92: 'COL4A4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 38 70 60
COL4A4 MUTATED 10 17 16
COL4A4 WILD-TYPE 28 53 44
'COL4A4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.117 (Fisher's exact test), Q value = 1

Table S915.  Gene #92: 'COL4A4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 78 102
COL4A4 MUTATED 21 27 24
COL4A4 WILD-TYPE 77 51 78
'COL4A4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0813 (Fisher's exact test), Q value = 1

Table S916.  Gene #92: 'COL4A4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 134 71
COL4A4 MUTATED 15 43 14
COL4A4 WILD-TYPE 58 91 57
'COL4A4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.405 (Fisher's exact test), Q value = 1

Table S917.  Gene #92: 'COL4A4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 117 85
COL4A4 MUTATED 20 33 18
COL4A4 WILD-TYPE 47 84 67
'COL4A4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.97 (Fisher's exact test), Q value = 1

Table S918.  Gene #92: 'COL4A4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 160 82
COL4A4 MUTATED 7 43 21
COL4A4 WILD-TYPE 20 117 61
'COL4A4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.411 (Fisher's exact test), Q value = 1

Table S919.  Gene #92: 'COL4A4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 82 110 77
COL4A4 MUTATED 24 31 16
COL4A4 WILD-TYPE 58 79 61
'COL4A4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.282 (Fisher's exact test), Q value = 1

Table S920.  Gene #92: 'COL4A4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 79 45 120
COL4A4 MUTATED 5 20 8 38
COL4A4 WILD-TYPE 20 59 37 82
'RPGRIP1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.118 (Fisher's exact test), Q value = 1

Table S921.  Gene #93: 'RPGRIP1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
RPGRIP1 MUTATED 12 4 1 8
RPGRIP1 WILD-TYPE 70 47 46 90
'RPGRIP1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.383 (Fisher's exact test), Q value = 1

Table S922.  Gene #93: 'RPGRIP1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 95 106
RPGRIP1 MUTATED 10 7 8
RPGRIP1 WILD-TYPE 67 88 98
'RPGRIP1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.316 (Fisher's exact test), Q value = 1

Table S923.  Gene #93: 'RPGRIP1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
RPGRIP1 MUTATED 6 4 3 1
RPGRIP1 WILD-TYPE 40 54 23 37
'RPGRIP1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.515 (Fisher's exact test), Q value = 1

Table S924.  Gene #93: 'RPGRIP1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 38 70 60
RPGRIP1 MUTATED 4 7 3
RPGRIP1 WILD-TYPE 34 63 57
'RPGRIP1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.171 (Fisher's exact test), Q value = 1

Table S925.  Gene #93: 'RPGRIP1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 78 102
RPGRIP1 MUTATED 5 7 13
RPGRIP1 WILD-TYPE 93 71 89
'RPGRIP1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00313 (Fisher's exact test), Q value = 1

Table S926.  Gene #93: 'RPGRIP1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 134 71
RPGRIP1 MUTATED 4 7 14
RPGRIP1 WILD-TYPE 69 127 57

Figure S38.  Get High-res Image Gene #93: 'RPGRIP1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'RPGRIP1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.119 (Fisher's exact test), Q value = 1

Table S927.  Gene #93: 'RPGRIP1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 117 85
RPGRIP1 MUTATED 4 16 5
RPGRIP1 WILD-TYPE 63 101 80
'RPGRIP1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.103 (Fisher's exact test), Q value = 1

Table S928.  Gene #93: 'RPGRIP1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 160 82
RPGRIP1 MUTATED 1 20 4
RPGRIP1 WILD-TYPE 26 140 78
'RPGRIP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0553 (Fisher's exact test), Q value = 1

Table S929.  Gene #93: 'RPGRIP1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 82 110 77
RPGRIP1 MUTATED 4 16 5
RPGRIP1 WILD-TYPE 78 94 72
'RPGRIP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0606 (Fisher's exact test), Q value = 1

Table S930.  Gene #93: 'RPGRIP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 79 45 120
RPGRIP1 MUTATED 0 4 4 17
RPGRIP1 WILD-TYPE 25 75 41 103
'LPAR1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.55 (Fisher's exact test), Q value = 1

Table S931.  Gene #94: 'LPAR1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
LPAR1 MUTATED 5 1 1 6
LPAR1 WILD-TYPE 77 50 46 92
'LPAR1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0408 (Fisher's exact test), Q value = 1

Table S932.  Gene #94: 'LPAR1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 95 106
LPAR1 MUTATED 0 6 7
LPAR1 WILD-TYPE 77 89 99

Figure S39.  Get High-res Image Gene #94: 'LPAR1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'LPAR1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.77 (Fisher's exact test), Q value = 1

Table S933.  Gene #94: 'LPAR1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
LPAR1 MUTATED 2 4 2 1
LPAR1 WILD-TYPE 44 54 24 37
'LPAR1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.5 (Fisher's exact test), Q value = 1

Table S934.  Gene #94: 'LPAR1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 38 70 60
LPAR1 MUTATED 1 3 5
LPAR1 WILD-TYPE 37 67 55
'LPAR1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0787 (Fisher's exact test), Q value = 1

Table S935.  Gene #94: 'LPAR1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 78 102
LPAR1 MUTATED 1 5 7
LPAR1 WILD-TYPE 97 73 95
'LPAR1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.327 (Fisher's exact test), Q value = 1

Table S936.  Gene #94: 'LPAR1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 134 71
LPAR1 MUTATED 1 8 4
LPAR1 WILD-TYPE 72 126 67
'LPAR1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.807 (Fisher's exact test), Q value = 1

Table S937.  Gene #94: 'LPAR1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 117 85
LPAR1 MUTATED 4 5 3
LPAR1 WILD-TYPE 63 112 82
'LPAR1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.394 (Fisher's exact test), Q value = 1

Table S938.  Gene #94: 'LPAR1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 160 82
LPAR1 MUTATED 2 8 2
LPAR1 WILD-TYPE 25 152 80
'LPAR1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.703 (Fisher's exact test), Q value = 1

Table S939.  Gene #94: 'LPAR1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 82 110 77
LPAR1 MUTATED 4 6 2
LPAR1 WILD-TYPE 78 104 75
'LPAR1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.574 (Fisher's exact test), Q value = 1

Table S940.  Gene #94: 'LPAR1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 79 45 120
LPAR1 MUTATED 2 2 2 6
LPAR1 WILD-TYPE 23 77 43 114
'GNAI2 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S941.  Gene #95: 'GNAI2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
GNAI2 MUTATED 1 1 1 2
GNAI2 WILD-TYPE 81 50 46 96
'GNAI2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.531 (Fisher's exact test), Q value = 1

Table S942.  Gene #95: 'GNAI2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 95 106
GNAI2 MUTATED 1 3 1
GNAI2 WILD-TYPE 76 92 105
'GNAI2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.284 (Fisher's exact test), Q value = 1

Table S943.  Gene #95: 'GNAI2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
GNAI2 MUTATED 2 0 0 1
GNAI2 WILD-TYPE 44 58 26 37
'GNAI2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.055 (Fisher's exact test), Q value = 1

Table S944.  Gene #95: 'GNAI2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 38 70 60
GNAI2 MUTATED 0 0 3
GNAI2 WILD-TYPE 38 70 57
'GNAI2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S945.  Gene #95: 'GNAI2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 78 102
GNAI2 MUTATED 2 1 2
GNAI2 WILD-TYPE 96 77 100
'GNAI2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.723 (Fisher's exact test), Q value = 1

Table S946.  Gene #95: 'GNAI2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 134 71
GNAI2 MUTATED 1 2 2
GNAI2 WILD-TYPE 72 132 69
'GNAI2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.531 (Fisher's exact test), Q value = 1

Table S947.  Gene #95: 'GNAI2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 117 85
GNAI2 MUTATED 2 1 2
GNAI2 WILD-TYPE 65 116 83
'GNAI2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.38 (Fisher's exact test), Q value = 1

Table S948.  Gene #95: 'GNAI2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 160 82
GNAI2 MUTATED 0 2 3
GNAI2 WILD-TYPE 27 158 79
'GNAI2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.111 (Fisher's exact test), Q value = 1

Table S949.  Gene #95: 'GNAI2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 82 110 77
GNAI2 MUTATED 3 0 2
GNAI2 WILD-TYPE 79 110 75
'GNAI2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.634 (Fisher's exact test), Q value = 1

Table S950.  Gene #95: 'GNAI2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 79 45 120
GNAI2 MUTATED 0 3 0 2
GNAI2 WILD-TYPE 25 76 45 118
'PTPRT MUTATION STATUS' versus 'CN_CNMF'

P value = 0.106 (Fisher's exact test), Q value = 1

Table S951.  Gene #96: 'PTPRT MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
PTPRT MUTATED 25 16 7 33
PTPRT WILD-TYPE 57 35 40 65
'PTPRT MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.119 (Fisher's exact test), Q value = 1

Table S952.  Gene #96: 'PTPRT MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 95 106
PTPRT MUTATED 18 35 28
PTPRT WILD-TYPE 59 60 78
'PTPRT MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.263 (Fisher's exact test), Q value = 1

Table S953.  Gene #96: 'PTPRT MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
PTPRT MUTATED 14 21 4 13
PTPRT WILD-TYPE 32 37 22 25
'PTPRT MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.761 (Fisher's exact test), Q value = 1

Table S954.  Gene #96: 'PTPRT MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 38 70 60
PTPRT MUTATED 10 22 20
PTPRT WILD-TYPE 28 48 40
'PTPRT MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.935 (Fisher's exact test), Q value = 1

Table S955.  Gene #96: 'PTPRT MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 78 102
PTPRT MUTATED 28 24 29
PTPRT WILD-TYPE 70 54 73
'PTPRT MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.67 (Fisher's exact test), Q value = 1

Table S956.  Gene #96: 'PTPRT MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 134 71
PTPRT MUTATED 21 42 18
PTPRT WILD-TYPE 52 92 53
'PTPRT MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.315 (Fisher's exact test), Q value = 1

Table S957.  Gene #96: 'PTPRT MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 117 85
PTPRT MUTATED 20 39 20
PTPRT WILD-TYPE 47 78 65
'PTPRT MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.647 (Fisher's exact test), Q value = 1

Table S958.  Gene #96: 'PTPRT MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 160 82
PTPRT MUTATED 6 50 23
PTPRT WILD-TYPE 21 110 59
'PTPRT MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.252 (Fisher's exact test), Q value = 1

Table S959.  Gene #96: 'PTPRT MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 82 110 77
PTPRT MUTATED 23 38 18
PTPRT WILD-TYPE 59 72 59
'PTPRT MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.203 (Fisher's exact test), Q value = 1

Table S960.  Gene #96: 'PTPRT MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 79 45 120
PTPRT MUTATED 5 21 10 43
PTPRT WILD-TYPE 20 58 35 77
'PDE1A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.686 (Fisher's exact test), Q value = 1

Table S961.  Gene #97: 'PDE1A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
PDE1A MUTATED 13 9 5 12
PDE1A WILD-TYPE 69 42 42 86
'PDE1A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.609 (Fisher's exact test), Q value = 1

Table S962.  Gene #97: 'PDE1A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 95 106
PDE1A MUTATED 9 16 14
PDE1A WILD-TYPE 68 79 92
'PDE1A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.705 (Fisher's exact test), Q value = 1

Table S963.  Gene #97: 'PDE1A MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
PDE1A MUTATED 7 8 6 7
PDE1A WILD-TYPE 39 50 20 31
'PDE1A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.202 (Fisher's exact test), Q value = 1

Table S964.  Gene #97: 'PDE1A MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 38 70 60
PDE1A MUTATED 8 14 6
PDE1A WILD-TYPE 30 56 54
'PDE1A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0976 (Fisher's exact test), Q value = 1

Table S965.  Gene #97: 'PDE1A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 78 102
PDE1A MUTATED 8 14 17
PDE1A WILD-TYPE 90 64 85
'PDE1A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0333 (Fisher's exact test), Q value = 1

Table S966.  Gene #97: 'PDE1A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 134 71
PDE1A MUTATED 4 24 11
PDE1A WILD-TYPE 69 110 60

Figure S40.  Get High-res Image Gene #97: 'PDE1A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'PDE1A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.49 (Fisher's exact test), Q value = 1

Table S967.  Gene #97: 'PDE1A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 117 85
PDE1A MUTATED 8 20 10
PDE1A WILD-TYPE 59 97 75
'PDE1A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.203 (Fisher's exact test), Q value = 1

Table S968.  Gene #97: 'PDE1A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 160 82
PDE1A MUTATED 4 27 7
PDE1A WILD-TYPE 23 133 75
'PDE1A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0652 (Fisher's exact test), Q value = 1

Table S969.  Gene #97: 'PDE1A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 82 110 77
PDE1A MUTATED 6 21 11
PDE1A WILD-TYPE 76 89 66
'PDE1A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.183 (Fisher's exact test), Q value = 1

Table S970.  Gene #97: 'PDE1A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 79 45 120
PDE1A MUTATED 4 6 6 22
PDE1A WILD-TYPE 21 73 39 98
'KIAA2022 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.78 (Fisher's exact test), Q value = 1

Table S971.  Gene #98: 'KIAA2022 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
KIAA2022 MUTATED 14 12 8 20
KIAA2022 WILD-TYPE 68 39 39 78
'KIAA2022 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.682 (Fisher's exact test), Q value = 1

Table S972.  Gene #98: 'KIAA2022 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 95 106
KIAA2022 MUTATED 13 21 20
KIAA2022 WILD-TYPE 64 74 86
'KIAA2022 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.434 (Fisher's exact test), Q value = 1

Table S973.  Gene #98: 'KIAA2022 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
KIAA2022 MUTATED 7 8 5 10
KIAA2022 WILD-TYPE 39 50 21 28
'KIAA2022 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.716 (Fisher's exact test), Q value = 1

Table S974.  Gene #98: 'KIAA2022 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 38 70 60
KIAA2022 MUTATED 5 13 12
KIAA2022 WILD-TYPE 33 57 48
'KIAA2022 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.316 (Fisher's exact test), Q value = 1

Table S975.  Gene #98: 'KIAA2022 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 78 102
KIAA2022 MUTATED 15 19 20
KIAA2022 WILD-TYPE 83 59 82
'KIAA2022 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.499 (Fisher's exact test), Q value = 1

Table S976.  Gene #98: 'KIAA2022 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 134 71
KIAA2022 MUTATED 11 27 16
KIAA2022 WILD-TYPE 62 107 55
'KIAA2022 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.516 (Fisher's exact test), Q value = 1

Table S977.  Gene #98: 'KIAA2022 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 117 85
KIAA2022 MUTATED 11 26 14
KIAA2022 WILD-TYPE 56 91 71
'KIAA2022 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.224 (Fisher's exact test), Q value = 1

Table S978.  Gene #98: 'KIAA2022 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 160 82
KIAA2022 MUTATED 7 33 11
KIAA2022 WILD-TYPE 20 127 71
'KIAA2022 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.356 (Fisher's exact test), Q value = 1

Table S979.  Gene #98: 'KIAA2022 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 82 110 77
KIAA2022 MUTATED 15 25 11
KIAA2022 WILD-TYPE 67 85 66
'KIAA2022 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0542 (Fisher's exact test), Q value = 1

Table S980.  Gene #98: 'KIAA2022 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 79 45 120
KIAA2022 MUTATED 6 11 4 30
KIAA2022 WILD-TYPE 19 68 41 90
'HRNR MUTATION STATUS' versus 'CN_CNMF'

P value = 0.251 (Fisher's exact test), Q value = 1

Table S981.  Gene #99: 'HRNR MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
HRNR MUTATED 20 12 5 19
HRNR WILD-TYPE 62 39 42 79
'HRNR MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.271 (Fisher's exact test), Q value = 1

Table S982.  Gene #99: 'HRNR MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 95 106
HRNR MUTATED 12 24 20
HRNR WILD-TYPE 65 71 86
'HRNR MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.682 (Fisher's exact test), Q value = 1

Table S983.  Gene #99: 'HRNR MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
HRNR MUTATED 8 12 7 10
HRNR WILD-TYPE 38 46 19 28
'HRNR MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.538 (Fisher's exact test), Q value = 1

Table S984.  Gene #99: 'HRNR MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 38 70 60
HRNR MUTATED 8 13 16
HRNR WILD-TYPE 30 57 44
'HRNR MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.243 (Fisher's exact test), Q value = 1

Table S985.  Gene #99: 'HRNR MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 78 102
HRNR MUTATED 16 14 26
HRNR WILD-TYPE 82 64 76
'HRNR MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.97 (Fisher's exact test), Q value = 1

Table S986.  Gene #99: 'HRNR MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 134 71
HRNR MUTATED 14 28 14
HRNR WILD-TYPE 59 106 57
'HRNR MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0984 (Fisher's exact test), Q value = 1

Table S987.  Gene #99: 'HRNR MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 117 85
HRNR MUTATED 17 27 11
HRNR WILD-TYPE 50 90 74
'HRNR MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.637 (Fisher's exact test), Q value = 1

Table S988.  Gene #99: 'HRNR MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 160 82
HRNR MUTATED 6 35 14
HRNR WILD-TYPE 21 125 68
'HRNR MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.282 (Fisher's exact test), Q value = 1

Table S989.  Gene #99: 'HRNR MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 82 110 77
HRNR MUTATED 19 25 11
HRNR WILD-TYPE 63 85 66
'HRNR MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.588 (Fisher's exact test), Q value = 1

Table S990.  Gene #99: 'HRNR MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 79 45 120
HRNR MUTATED 5 14 7 29
HRNR WILD-TYPE 20 65 38 91
'EIF3D MUTATION STATUS' versus 'CN_CNMF'

P value = 0.918 (Fisher's exact test), Q value = 1

Table S991.  Gene #100: 'EIF3D MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
EIF3D MUTATED 1 1 1 1
EIF3D WILD-TYPE 81 50 46 97
'EIF3D MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.833 (Fisher's exact test), Q value = 1

Table S992.  Gene #100: 'EIF3D MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 95 106
EIF3D MUTATED 1 2 1
EIF3D WILD-TYPE 76 93 105
'EIF3D MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.336 (Fisher's exact test), Q value = 1

Table S993.  Gene #100: 'EIF3D MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
EIF3D MUTATED 0 1 0 2
EIF3D WILD-TYPE 46 57 26 36
'EIF3D MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.794 (Fisher's exact test), Q value = 1

Table S994.  Gene #100: 'EIF3D MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 38 70 60
EIF3D MUTATED 0 2 1
EIF3D WILD-TYPE 38 68 59
'EIF3D MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S995.  Gene #100: 'EIF3D MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 78 102
EIF3D MUTATED 1 1 2
EIF3D WILD-TYPE 97 77 100
'EIF3D MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.476 (Fisher's exact test), Q value = 1

Table S996.  Gene #100: 'EIF3D MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 134 71
EIF3D MUTATED 1 1 2
EIF3D WILD-TYPE 72 133 69
'EIF3D MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.574 (Fisher's exact test), Q value = 1

Table S997.  Gene #100: 'EIF3D MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 117 85
EIF3D MUTATED 0 3 1
EIF3D WILD-TYPE 67 114 84
'EIF3D MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.412 (Fisher's exact test), Q value = 1

Table S998.  Gene #100: 'EIF3D MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 160 82
EIF3D MUTATED 0 4 0
EIF3D WILD-TYPE 27 156 82
'EIF3D MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.309 (Fisher's exact test), Q value = 1

Table S999.  Gene #100: 'EIF3D MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 82 110 77
EIF3D MUTATED 0 3 1
EIF3D WILD-TYPE 82 107 76
'EIF3D MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.53 (Fisher's exact test), Q value = 1

Table S1000.  Gene #100: 'EIF3D MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 79 45 120
EIF3D MUTATED 0 0 1 3
EIF3D WILD-TYPE 25 79 44 117
'SLC15A2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.624 (Fisher's exact test), Q value = 1

Table S1001.  Gene #101: 'SLC15A2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
SLC15A2 MUTATED 9 7 3 13
SLC15A2 WILD-TYPE 73 44 44 85
'SLC15A2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.365 (Fisher's exact test), Q value = 1

Table S1002.  Gene #101: 'SLC15A2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 95 106
SLC15A2 MUTATED 6 14 12
SLC15A2 WILD-TYPE 71 81 94
'SLC15A2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.795 (Fisher's exact test), Q value = 1

Table S1003.  Gene #101: 'SLC15A2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
SLC15A2 MUTATED 7 6 4 6
SLC15A2 WILD-TYPE 39 52 22 32
'SLC15A2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1004.  Gene #101: 'SLC15A2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 38 70 60
SLC15A2 MUTATED 5 10 8
SLC15A2 WILD-TYPE 33 60 52
'SLC15A2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.833 (Fisher's exact test), Q value = 1

Table S1005.  Gene #101: 'SLC15A2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 78 102
SLC15A2 MUTATED 10 10 12
SLC15A2 WILD-TYPE 88 68 90
'SLC15A2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.738 (Fisher's exact test), Q value = 1

Table S1006.  Gene #101: 'SLC15A2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 134 71
SLC15A2 MUTATED 8 14 10
SLC15A2 WILD-TYPE 65 120 61
'SLC15A2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.769 (Fisher's exact test), Q value = 1

Table S1007.  Gene #101: 'SLC15A2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 117 85
SLC15A2 MUTATED 8 15 8
SLC15A2 WILD-TYPE 59 102 77
'SLC15A2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.454 (Fisher's exact test), Q value = 1

Table S1008.  Gene #101: 'SLC15A2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 160 82
SLC15A2 MUTATED 2 22 7
SLC15A2 WILD-TYPE 25 138 75
'SLC15A2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.63 (Fisher's exact test), Q value = 1

Table S1009.  Gene #101: 'SLC15A2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 82 110 77
SLC15A2 MUTATED 9 15 7
SLC15A2 WILD-TYPE 73 95 70
'SLC15A2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.395 (Fisher's exact test), Q value = 1

Table S1010.  Gene #101: 'SLC15A2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 79 45 120
SLC15A2 MUTATED 1 7 5 18
SLC15A2 WILD-TYPE 24 72 40 102
'ST6GAL2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.574 (Fisher's exact test), Q value = 1

Table S1011.  Gene #102: 'ST6GAL2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
ST6GAL2 MUTATED 11 6 6 19
ST6GAL2 WILD-TYPE 71 45 41 79
'ST6GAL2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.218 (Fisher's exact test), Q value = 1

Table S1012.  Gene #102: 'ST6GAL2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 95 106
ST6GAL2 MUTATED 8 19 15
ST6GAL2 WILD-TYPE 69 76 91
'ST6GAL2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.424 (Fisher's exact test), Q value = 1

Table S1013.  Gene #102: 'ST6GAL2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
ST6GAL2 MUTATED 8 7 1 4
ST6GAL2 WILD-TYPE 38 51 25 34
'ST6GAL2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.468 (Fisher's exact test), Q value = 1

Table S1014.  Gene #102: 'ST6GAL2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 38 70 60
ST6GAL2 MUTATED 6 6 8
ST6GAL2 WILD-TYPE 32 64 52
'ST6GAL2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.914 (Fisher's exact test), Q value = 1

Table S1015.  Gene #102: 'ST6GAL2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 78 102
ST6GAL2 MUTATED 16 11 15
ST6GAL2 WILD-TYPE 82 67 87
'ST6GAL2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0944 (Fisher's exact test), Q value = 1

Table S1016.  Gene #102: 'ST6GAL2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 134 71
ST6GAL2 MUTATED 15 14 13
ST6GAL2 WILD-TYPE 58 120 58
'ST6GAL2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.4 (Fisher's exact test), Q value = 1

Table S1017.  Gene #102: 'ST6GAL2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 117 85
ST6GAL2 MUTATED 8 15 16
ST6GAL2 WILD-TYPE 59 102 69
'ST6GAL2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.507 (Fisher's exact test), Q value = 1

Table S1018.  Gene #102: 'ST6GAL2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 160 82
ST6GAL2 MUTATED 2 23 14
ST6GAL2 WILD-TYPE 25 137 68
'ST6GAL2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.33 (Fisher's exact test), Q value = 1

Table S1019.  Gene #102: 'ST6GAL2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 82 110 77
ST6GAL2 MUTATED 11 13 15
ST6GAL2 WILD-TYPE 71 97 62
'ST6GAL2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.667 (Fisher's exact test), Q value = 1

Table S1020.  Gene #102: 'ST6GAL2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 79 45 120
ST6GAL2 MUTATED 2 14 7 16
ST6GAL2 WILD-TYPE 23 65 38 104
'DNAJC5B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.161 (Fisher's exact test), Q value = 1

Table S1021.  Gene #103: 'DNAJC5B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
DNAJC5B MUTATED 7 2 0 4
DNAJC5B WILD-TYPE 75 49 47 94
'DNAJC5B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.473 (Fisher's exact test), Q value = 1

Table S1022.  Gene #103: 'DNAJC5B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 95 106
DNAJC5B MUTATED 4 6 3
DNAJC5B WILD-TYPE 73 89 103
'DNAJC5B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1023.  Gene #103: 'DNAJC5B MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
DNAJC5B MUTATED 2 3 1 2
DNAJC5B WILD-TYPE 44 55 25 36
'DNAJC5B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.525 (Fisher's exact test), Q value = 1

Table S1024.  Gene #103: 'DNAJC5B MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 38 70 60
DNAJC5B MUTATED 1 5 2
DNAJC5B WILD-TYPE 37 65 58
'DNAJC5B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.678 (Fisher's exact test), Q value = 1

Table S1025.  Gene #103: 'DNAJC5B MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 78 102
DNAJC5B MUTATED 3 4 6
DNAJC5B WILD-TYPE 95 74 96
'DNAJC5B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.537 (Fisher's exact test), Q value = 1

Table S1026.  Gene #103: 'DNAJC5B MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 134 71
DNAJC5B MUTATED 3 5 5
DNAJC5B WILD-TYPE 70 129 66
'DNAJC5B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00843 (Fisher's exact test), Q value = 1

Table S1027.  Gene #103: 'DNAJC5B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 117 85
DNAJC5B MUTATED 3 10 0
DNAJC5B WILD-TYPE 64 107 85

Figure S41.  Get High-res Image Gene #103: 'DNAJC5B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'DNAJC5B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.128 (Fisher's exact test), Q value = 1

Table S1028.  Gene #103: 'DNAJC5B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 160 82
DNAJC5B MUTATED 1 11 1
DNAJC5B WILD-TYPE 26 149 81
'DNAJC5B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0225 (Fisher's exact test), Q value = 1

Table S1029.  Gene #103: 'DNAJC5B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 82 110 77
DNAJC5B MUTATED 4 9 0
DNAJC5B WILD-TYPE 78 101 77

Figure S42.  Get High-res Image Gene #103: 'DNAJC5B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'DNAJC5B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.117 (Fisher's exact test), Q value = 1

Table S1030.  Gene #103: 'DNAJC5B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 79 45 120
DNAJC5B MUTATED 1 1 1 10
DNAJC5B WILD-TYPE 24 78 44 110
'TRHDE MUTATION STATUS' versus 'CN_CNMF'

P value = 0.843 (Fisher's exact test), Q value = 1

Table S1031.  Gene #104: 'TRHDE MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
TRHDE MUTATED 16 7 7 17
TRHDE WILD-TYPE 66 44 40 81
'TRHDE MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.265 (Fisher's exact test), Q value = 1

Table S1032.  Gene #104: 'TRHDE MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 95 106
TRHDE MUTATED 9 20 18
TRHDE WILD-TYPE 68 75 88
'TRHDE MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.136 (Fisher's exact test), Q value = 1

Table S1033.  Gene #104: 'TRHDE MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
TRHDE MUTATED 10 8 3 12
TRHDE WILD-TYPE 36 50 23 26
'TRHDE MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.659 (Fisher's exact test), Q value = 1

Table S1034.  Gene #104: 'TRHDE MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 38 70 60
TRHDE MUTATED 7 16 10
TRHDE WILD-TYPE 31 54 50
'TRHDE MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.271 (Fisher's exact test), Q value = 1

Table S1035.  Gene #104: 'TRHDE MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 78 102
TRHDE MUTATED 12 14 21
TRHDE WILD-TYPE 86 64 81
'TRHDE MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1036.  Gene #104: 'TRHDE MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 134 71
TRHDE MUTATED 12 23 12
TRHDE WILD-TYPE 61 111 59
'TRHDE MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.52 (Fisher's exact test), Q value = 1

Table S1037.  Gene #104: 'TRHDE MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 117 85
TRHDE MUTATED 12 22 11
TRHDE WILD-TYPE 55 95 74
'TRHDE MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.738 (Fisher's exact test), Q value = 1

Table S1038.  Gene #104: 'TRHDE MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 160 82
TRHDE MUTATED 3 27 15
TRHDE WILD-TYPE 24 133 67
'TRHDE MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.21 (Fisher's exact test), Q value = 1

Table S1039.  Gene #104: 'TRHDE MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 82 110 77
TRHDE MUTATED 16 21 8
TRHDE WILD-TYPE 66 89 69
'TRHDE MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0619 (Fisher's exact test), Q value = 1

Table S1040.  Gene #104: 'TRHDE MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 79 45 120
TRHDE MUTATED 2 13 3 27
TRHDE WILD-TYPE 23 66 42 93
'COL19A1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.145 (Fisher's exact test), Q value = 1

Table S1041.  Gene #105: 'COL19A1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
COL19A1 MUTATED 13 5 2 16
COL19A1 WILD-TYPE 69 46 45 82
'COL19A1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0522 (Fisher's exact test), Q value = 1

Table S1042.  Gene #105: 'COL19A1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 95 106
COL19A1 MUTATED 7 19 10
COL19A1 WILD-TYPE 70 76 96
'COL19A1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0793 (Fisher's exact test), Q value = 1

Table S1043.  Gene #105: 'COL19A1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
COL19A1 MUTATED 10 3 3 6
COL19A1 WILD-TYPE 36 55 23 32
'COL19A1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.324 (Fisher's exact test), Q value = 1

Table S1044.  Gene #105: 'COL19A1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 38 70 60
COL19A1 MUTATED 6 6 10
COL19A1 WILD-TYPE 32 64 50
'COL19A1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.781 (Fisher's exact test), Q value = 1

Table S1045.  Gene #105: 'COL19A1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 78 102
COL19A1 MUTATED 11 10 15
COL19A1 WILD-TYPE 87 68 87
'COL19A1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.626 (Fisher's exact test), Q value = 1

Table S1046.  Gene #105: 'COL19A1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 134 71
COL19A1 MUTATED 10 15 11
COL19A1 WILD-TYPE 63 119 60
'COL19A1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.906 (Fisher's exact test), Q value = 1

Table S1047.  Gene #105: 'COL19A1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 117 85
COL19A1 MUTATED 8 16 10
COL19A1 WILD-TYPE 59 101 75
'COL19A1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.663 (Fisher's exact test), Q value = 1

Table S1048.  Gene #105: 'COL19A1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 160 82
COL19A1 MUTATED 2 20 12
COL19A1 WILD-TYPE 25 140 70
'COL19A1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.739 (Fisher's exact test), Q value = 1

Table S1049.  Gene #105: 'COL19A1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 82 110 77
COL19A1 MUTATED 9 16 9
COL19A1 WILD-TYPE 73 94 68
'COL19A1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.639 (Fisher's exact test), Q value = 1

Table S1050.  Gene #105: 'COL19A1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 79 45 120
COL19A1 MUTATED 1 11 6 16
COL19A1 WILD-TYPE 24 68 39 104
'OR4K1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.662 (Fisher's exact test), Q value = 1

Table S1051.  Gene #106: 'OR4K1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
OR4K1 MUTATED 11 6 3 10
OR4K1 WILD-TYPE 71 45 44 88
'OR4K1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.352 (Fisher's exact test), Q value = 1

Table S1052.  Gene #106: 'OR4K1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 95 106
OR4K1 MUTATED 9 13 8
OR4K1 WILD-TYPE 68 82 98
'OR4K1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.183 (Fisher's exact test), Q value = 1

Table S1053.  Gene #106: 'OR4K1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
OR4K1 MUTATED 5 5 1 8
OR4K1 WILD-TYPE 41 53 25 30
'OR4K1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.827 (Fisher's exact test), Q value = 1

Table S1054.  Gene #106: 'OR4K1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 38 70 60
OR4K1 MUTATED 4 7 8
OR4K1 WILD-TYPE 34 63 52
'OR4K1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1055.  Gene #106: 'OR4K1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 78 102
OR4K1 MUTATED 11 8 11
OR4K1 WILD-TYPE 87 70 91
'OR4K1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.372 (Fisher's exact test), Q value = 1

Table S1056.  Gene #106: 'OR4K1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 134 71
OR4K1 MUTATED 10 11 9
OR4K1 WILD-TYPE 63 123 62
'OR4K1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.433 (Fisher's exact test), Q value = 1

Table S1057.  Gene #106: 'OR4K1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 117 85
OR4K1 MUTATED 6 10 12
OR4K1 WILD-TYPE 61 107 73
'OR4K1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.148 (Fisher's exact test), Q value = 1

Table S1058.  Gene #106: 'OR4K1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 160 82
OR4K1 MUTATED 4 12 12
OR4K1 WILD-TYPE 23 148 70
'OR4K1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.532 (Fisher's exact test), Q value = 1

Table S1059.  Gene #106: 'OR4K1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 82 110 77
OR4K1 MUTATED 9 9 10
OR4K1 WILD-TYPE 73 101 67
'OR4K1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.363 (Fisher's exact test), Q value = 1

Table S1060.  Gene #106: 'OR4K1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 79 45 120
OR4K1 MUTATED 4 11 3 10
OR4K1 WILD-TYPE 21 68 42 110
'SLC38A1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.398 (Fisher's exact test), Q value = 1

Table S1061.  Gene #107: 'SLC38A1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
SLC38A1 MUTATED 6 1 4 9
SLC38A1 WILD-TYPE 76 50 43 89
'SLC38A1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.552 (Fisher's exact test), Q value = 1

Table S1062.  Gene #107: 'SLC38A1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 95 106
SLC38A1 MUTATED 4 9 7
SLC38A1 WILD-TYPE 73 86 99
'SLC38A1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.394 (Fisher's exact test), Q value = 1

Table S1063.  Gene #107: 'SLC38A1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
SLC38A1 MUTATED 3 1 2 3
SLC38A1 WILD-TYPE 43 57 24 35
'SLC38A1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1064.  Gene #107: 'SLC38A1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 38 70 60
SLC38A1 MUTATED 2 4 3
SLC38A1 WILD-TYPE 36 66 57
'SLC38A1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.463 (Fisher's exact test), Q value = 1

Table S1065.  Gene #107: 'SLC38A1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 78 102
SLC38A1 MUTATED 6 4 10
SLC38A1 WILD-TYPE 92 74 92
'SLC38A1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.384 (Fisher's exact test), Q value = 1

Table S1066.  Gene #107: 'SLC38A1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 134 71
SLC38A1 MUTATED 6 7 7
SLC38A1 WILD-TYPE 67 127 64
'SLC38A1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.767 (Fisher's exact test), Q value = 1

Table S1067.  Gene #107: 'SLC38A1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 117 85
SLC38A1 MUTATED 3 9 6
SLC38A1 WILD-TYPE 64 108 79
'SLC38A1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.683 (Fisher's exact test), Q value = 1

Table S1068.  Gene #107: 'SLC38A1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 160 82
SLC38A1 MUTATED 1 10 7
SLC38A1 WILD-TYPE 26 150 75
'SLC38A1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.4 (Fisher's exact test), Q value = 1

Table S1069.  Gene #107: 'SLC38A1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 82 110 77
SLC38A1 MUTATED 3 9 6
SLC38A1 WILD-TYPE 79 101 71
'SLC38A1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.81 (Fisher's exact test), Q value = 1

Table S1070.  Gene #107: 'SLC38A1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 79 45 120
SLC38A1 MUTATED 1 7 2 8
SLC38A1 WILD-TYPE 24 72 43 112
'TMC5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.239 (Fisher's exact test), Q value = 1

Table S1071.  Gene #108: 'TMC5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
TMC5 MUTATED 11 10 4 20
TMC5 WILD-TYPE 71 41 43 78
'TMC5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0128 (Fisher's exact test), Q value = 1

Table S1072.  Gene #108: 'TMC5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 95 106
TMC5 MUTATED 5 21 19
TMC5 WILD-TYPE 72 74 87

Figure S43.  Get High-res Image Gene #108: 'TMC5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'TMC5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.433 (Fisher's exact test), Q value = 1

Table S1073.  Gene #108: 'TMC5 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
TMC5 MUTATED 10 8 2 7
TMC5 WILD-TYPE 36 50 24 31
'TMC5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.623 (Fisher's exact test), Q value = 1

Table S1074.  Gene #108: 'TMC5 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 38 70 60
TMC5 MUTATED 7 9 11
TMC5 WILD-TYPE 31 61 49
'TMC5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00171 (Fisher's exact test), Q value = 1

Table S1075.  Gene #108: 'TMC5 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 78 102
TMC5 MUTATED 7 21 17
TMC5 WILD-TYPE 91 57 85

Figure S44.  Get High-res Image Gene #108: 'TMC5 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'TMC5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0177 (Fisher's exact test), Q value = 1

Table S1076.  Gene #108: 'TMC5 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 134 71
TMC5 MUTATED 5 29 11
TMC5 WILD-TYPE 68 105 60

Figure S45.  Get High-res Image Gene #108: 'TMC5 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'TMC5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0419 (Fisher's exact test), Q value = 1

Table S1077.  Gene #108: 'TMC5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 117 85
TMC5 MUTATED 9 26 8
TMC5 WILD-TYPE 58 91 77

Figure S46.  Get High-res Image Gene #108: 'TMC5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'TMC5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0948 (Fisher's exact test), Q value = 1

Table S1078.  Gene #108: 'TMC5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 160 82
TMC5 MUTATED 3 32 8
TMC5 WILD-TYPE 24 128 74
'TMC5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.105 (Fisher's exact test), Q value = 1

Table S1079.  Gene #108: 'TMC5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 82 110 77
TMC5 MUTATED 10 24 9
TMC5 WILD-TYPE 72 86 68
'TMC5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00295 (Fisher's exact test), Q value = 1

Table S1080.  Gene #108: 'TMC5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 79 45 120
TMC5 MUTATED 3 8 2 30
TMC5 WILD-TYPE 22 71 43 90

Figure S47.  Get High-res Image Gene #108: 'TMC5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'TBC1D3B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.756 (Fisher's exact test), Q value = 1

Table S1081.  Gene #109: 'TBC1D3B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
TBC1D3B MUTATED 1 1 0 3
TBC1D3B WILD-TYPE 81 50 47 95
'TBC1D3B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.269 (Fisher's exact test), Q value = 1

Table S1082.  Gene #109: 'TBC1D3B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 95 106
TBC1D3B MUTATED 2 0 3
TBC1D3B WILD-TYPE 75 95 103
'TBC1D3B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.195 (Fisher's exact test), Q value = 1

Table S1083.  Gene #109: 'TBC1D3B MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
TBC1D3B MUTATED 2 0 0 2
TBC1D3B WILD-TYPE 44 58 26 36
'TBC1D3B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.445 (Fisher's exact test), Q value = 1

Table S1084.  Gene #109: 'TBC1D3B MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 38 70 60
TBC1D3B MUTATED 2 1 1
TBC1D3B WILD-TYPE 36 69 59
'TBC1D3B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.857 (Fisher's exact test), Q value = 1

Table S1085.  Gene #109: 'TBC1D3B MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 78 102
TBC1D3B MUTATED 1 2 2
TBC1D3B WILD-TYPE 97 76 100
'TBC1D3B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.723 (Fisher's exact test), Q value = 1

Table S1086.  Gene #109: 'TBC1D3B MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 134 71
TBC1D3B MUTATED 1 2 2
TBC1D3B WILD-TYPE 72 132 69
'TBC1D3B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.856 (Fisher's exact test), Q value = 1

Table S1087.  Gene #109: 'TBC1D3B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 117 85
TBC1D3B MUTATED 1 3 1
TBC1D3B WILD-TYPE 66 114 84
'TBC1D3B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.613 (Fisher's exact test), Q value = 1

Table S1088.  Gene #109: 'TBC1D3B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 160 82
TBC1D3B MUTATED 1 3 1
TBC1D3B WILD-TYPE 26 157 81
'TBC1D3B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.864 (Fisher's exact test), Q value = 1

Table S1089.  Gene #109: 'TBC1D3B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 82 110 77
TBC1D3B MUTATED 1 2 2
TBC1D3B WILD-TYPE 81 108 75
'TBC1D3B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.69 (Fisher's exact test), Q value = 1

Table S1090.  Gene #109: 'TBC1D3B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 79 45 120
TBC1D3B MUTATED 1 1 1 2
TBC1D3B WILD-TYPE 24 78 44 118
'NOP10 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1091.  Gene #110: 'NOP10 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
NOP10 MUTATED 1 1 0 1
NOP10 WILD-TYPE 81 50 47 97
'NOP10 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.498 (Fisher's exact test), Q value = 1

Table S1092.  Gene #110: 'NOP10 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 95 106
NOP10 MUTATED 1 0 2
NOP10 WILD-TYPE 76 95 104
'NOP10 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.391 (Fisher's exact test), Q value = 1

Table S1093.  Gene #110: 'NOP10 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
NOP10 MUTATED 0 2 1 0
NOP10 WILD-TYPE 46 56 25 38
'NOP10 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.243 (Fisher's exact test), Q value = 1

Table S1094.  Gene #110: 'NOP10 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 38 70 60
NOP10 MUTATED 0 3 0
NOP10 WILD-TYPE 38 67 60
'NOP10 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1095.  Gene #110: 'NOP10 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 78 102
NOP10 MUTATED 1 1 1
NOP10 WILD-TYPE 97 77 101
'NOP10 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.62 (Fisher's exact test), Q value = 1

Table S1096.  Gene #110: 'NOP10 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 134 71
NOP10 MUTATED 0 2 1
NOP10 WILD-TYPE 73 132 70
'NOP10 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1097.  Gene #110: 'NOP10 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 117 85
NOP10 MUTATED 1 1 1
NOP10 WILD-TYPE 66 116 84
'NOP10 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1098.  Gene #110: 'NOP10 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 160 82
NOP10 MUTATED 0 2 1
NOP10 WILD-TYPE 27 158 81
'NOP10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.63 (Fisher's exact test), Q value = 1

Table S1099.  Gene #110: 'NOP10 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 82 110 77
NOP10 MUTATED 0 2 1
NOP10 WILD-TYPE 82 108 76
'NOP10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1100.  Gene #110: 'NOP10 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 79 45 120
NOP10 MUTATED 0 1 0 2
NOP10 WILD-TYPE 25 78 45 118
'CTNNB1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.892 (Fisher's exact test), Q value = 1

Table S1101.  Gene #111: 'CTNNB1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
CTNNB1 MUTATED 3 3 2 6
CTNNB1 WILD-TYPE 79 48 45 92
'CTNNB1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.726 (Fisher's exact test), Q value = 1

Table S1102.  Gene #111: 'CTNNB1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 95 106
CTNNB1 MUTATED 4 6 4
CTNNB1 WILD-TYPE 73 89 102
'CTNNB1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.35 (Fisher's exact test), Q value = 1

Table S1103.  Gene #111: 'CTNNB1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
CTNNB1 MUTATED 1 5 0 2
CTNNB1 WILD-TYPE 45 53 26 36
'CTNNB1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.464 (Fisher's exact test), Q value = 1

Table S1104.  Gene #111: 'CTNNB1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 38 70 60
CTNNB1 MUTATED 3 2 3
CTNNB1 WILD-TYPE 35 68 57
'CTNNB1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.273 (Fisher's exact test), Q value = 1

Table S1105.  Gene #111: 'CTNNB1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 78 102
CTNNB1 MUTATED 4 2 8
CTNNB1 WILD-TYPE 94 76 94
'CTNNB1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.349 (Fisher's exact test), Q value = 1

Table S1106.  Gene #111: 'CTNNB1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 134 71
CTNNB1 MUTATED 3 5 6
CTNNB1 WILD-TYPE 70 129 65
'CTNNB1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.546 (Fisher's exact test), Q value = 1

Table S1107.  Gene #111: 'CTNNB1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 117 85
CTNNB1 MUTATED 5 5 3
CTNNB1 WILD-TYPE 62 112 82
'CTNNB1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.757 (Fisher's exact test), Q value = 1

Table S1108.  Gene #111: 'CTNNB1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 160 82
CTNNB1 MUTATED 2 7 4
CTNNB1 WILD-TYPE 25 153 78
'CTNNB1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.822 (Fisher's exact test), Q value = 1

Table S1109.  Gene #111: 'CTNNB1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 82 110 77
CTNNB1 MUTATED 5 5 3
CTNNB1 WILD-TYPE 77 105 74
'CTNNB1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.266 (Fisher's exact test), Q value = 1

Table S1110.  Gene #111: 'CTNNB1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 79 45 120
CTNNB1 MUTATED 2 5 0 6
CTNNB1 WILD-TYPE 23 74 45 114
'SNCAIP MUTATION STATUS' versus 'CN_CNMF'

P value = 0.191 (Fisher's exact test), Q value = 1

Table S1111.  Gene #112: 'SNCAIP MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
SNCAIP MUTATED 17 4 10 18
SNCAIP WILD-TYPE 65 47 37 80
'SNCAIP MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.862 (Fisher's exact test), Q value = 1

Table S1112.  Gene #112: 'SNCAIP MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 95 106
SNCAIP MUTATED 12 17 20
SNCAIP WILD-TYPE 65 78 86
'SNCAIP MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.505 (Fisher's exact test), Q value = 1

Table S1113.  Gene #112: 'SNCAIP MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
SNCAIP MUTATED 10 9 2 6
SNCAIP WILD-TYPE 36 49 24 32
'SNCAIP MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.525 (Fisher's exact test), Q value = 1

Table S1114.  Gene #112: 'SNCAIP MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 38 70 60
SNCAIP MUTATED 6 9 12
SNCAIP WILD-TYPE 32 61 48
'SNCAIP MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.936 (Fisher's exact test), Q value = 1

Table S1115.  Gene #112: 'SNCAIP MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 78 102
SNCAIP MUTATED 18 14 17
SNCAIP WILD-TYPE 80 64 85
'SNCAIP MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.411 (Fisher's exact test), Q value = 1

Table S1116.  Gene #112: 'SNCAIP MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 134 71
SNCAIP MUTATED 13 27 9
SNCAIP WILD-TYPE 60 107 62
'SNCAIP MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.604 (Fisher's exact test), Q value = 1

Table S1117.  Gene #112: 'SNCAIP MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 117 85
SNCAIP MUTATED 13 22 12
SNCAIP WILD-TYPE 54 95 73
'SNCAIP MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.737 (Fisher's exact test), Q value = 1

Table S1118.  Gene #112: 'SNCAIP MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 160 82
SNCAIP MUTATED 5 30 12
SNCAIP WILD-TYPE 22 130 70
'SNCAIP MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.45 (Fisher's exact test), Q value = 1

Table S1119.  Gene #112: 'SNCAIP MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 82 110 77
SNCAIP MUTATED 15 22 10
SNCAIP WILD-TYPE 67 88 67
'SNCAIP MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0919 (Fisher's exact test), Q value = 1

Table S1120.  Gene #112: 'SNCAIP MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 79 45 120
SNCAIP MUTATED 5 12 3 27
SNCAIP WILD-TYPE 20 67 42 93
'CD2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.331 (Fisher's exact test), Q value = 1

Table S1121.  Gene #113: 'CD2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
CD2 MUTATED 6 7 2 6
CD2 WILD-TYPE 76 44 45 92
'CD2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.415 (Fisher's exact test), Q value = 1

Table S1122.  Gene #113: 'CD2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 95 106
CD2 MUTATED 5 10 6
CD2 WILD-TYPE 72 85 100
'CD2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.528 (Fisher's exact test), Q value = 1

Table S1123.  Gene #113: 'CD2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
CD2 MUTATED 4 5 0 3
CD2 WILD-TYPE 42 53 26 35
'CD2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.864 (Fisher's exact test), Q value = 1

Table S1124.  Gene #113: 'CD2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 38 70 60
CD2 MUTATED 2 6 4
CD2 WILD-TYPE 36 64 56
'CD2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.687 (Fisher's exact test), Q value = 1

Table S1125.  Gene #113: 'CD2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 78 102
CD2 MUTATED 9 6 6
CD2 WILD-TYPE 89 72 96
'CD2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.722 (Fisher's exact test), Q value = 1

Table S1126.  Gene #113: 'CD2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 134 71
CD2 MUTATED 7 9 5
CD2 WILD-TYPE 66 125 66
'CD2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1127.  Gene #113: 'CD2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 117 85
CD2 MUTATED 5 9 6
CD2 WILD-TYPE 62 108 79
'CD2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.594 (Fisher's exact test), Q value = 1

Table S1128.  Gene #113: 'CD2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 160 82
CD2 MUTATED 3 12 5
CD2 WILD-TYPE 24 148 77
'CD2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.867 (Fisher's exact test), Q value = 1

Table S1129.  Gene #113: 'CD2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 82 110 77
CD2 MUTATED 7 8 5
CD2 WILD-TYPE 75 102 72
'CD2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.641 (Fisher's exact test), Q value = 1

Table S1130.  Gene #113: 'CD2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 79 45 120
CD2 MUTATED 3 5 2 10
CD2 WILD-TYPE 22 74 43 110
'FASLG MUTATION STATUS' versus 'CN_CNMF'

P value = 0.215 (Fisher's exact test), Q value = 1

Table S1131.  Gene #114: 'FASLG MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
FASLG MUTATED 2 1 1 8
FASLG WILD-TYPE 80 50 46 90
'FASLG MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.152 (Fisher's exact test), Q value = 1

Table S1132.  Gene #114: 'FASLG MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 95 106
FASLG MUTATED 1 7 4
FASLG WILD-TYPE 76 88 102
'FASLG MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.433 (Fisher's exact test), Q value = 1

Table S1133.  Gene #114: 'FASLG MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
FASLG MUTATED 2 5 0 3
FASLG WILD-TYPE 44 53 26 35
'FASLG MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.593 (Fisher's exact test), Q value = 1

Table S1134.  Gene #114: 'FASLG MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 38 70 60
FASLG MUTATED 1 4 5
FASLG WILD-TYPE 37 66 55
'FASLG MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.661 (Fisher's exact test), Q value = 1

Table S1135.  Gene #114: 'FASLG MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 78 102
FASLG MUTATED 3 3 6
FASLG WILD-TYPE 95 75 96
'FASLG MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.64 (Fisher's exact test), Q value = 1

Table S1136.  Gene #114: 'FASLG MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 134 71
FASLG MUTATED 2 6 4
FASLG WILD-TYPE 71 128 67
'FASLG MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0967 (Fisher's exact test), Q value = 1

Table S1137.  Gene #114: 'FASLG MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 117 85
FASLG MUTATED 6 3 2
FASLG WILD-TYPE 61 114 83
'FASLG MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.523 (Fisher's exact test), Q value = 1

Table S1138.  Gene #114: 'FASLG MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 160 82
FASLG MUTATED 1 5 5
FASLG WILD-TYPE 26 155 77
'FASLG MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0827 (Fisher's exact test), Q value = 1

Table S1139.  Gene #114: 'FASLG MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 82 110 77
FASLG MUTATED 7 3 1
FASLG WILD-TYPE 75 107 76
'FASLG MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.467 (Fisher's exact test), Q value = 1

Table S1140.  Gene #114: 'FASLG MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 79 45 120
FASLG MUTATED 1 4 0 6
FASLG WILD-TYPE 24 75 45 114
'LIPI MUTATION STATUS' versus 'CN_CNMF'

P value = 0.894 (Fisher's exact test), Q value = 1

Table S1141.  Gene #115: 'LIPI MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
LIPI MUTATED 8 4 3 10
LIPI WILD-TYPE 74 47 44 88
'LIPI MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.76 (Fisher's exact test), Q value = 1

Table S1142.  Gene #115: 'LIPI MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 95 106
LIPI MUTATED 8 9 8
LIPI WILD-TYPE 69 86 98
'LIPI MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.898 (Fisher's exact test), Q value = 1

Table S1143.  Gene #115: 'LIPI MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
LIPI MUTATED 3 6 3 3
LIPI WILD-TYPE 43 52 23 35
'LIPI MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.596 (Fisher's exact test), Q value = 1

Table S1144.  Gene #115: 'LIPI MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 38 70 60
LIPI MUTATED 2 6 7
LIPI WILD-TYPE 36 64 53
'LIPI MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.297 (Fisher's exact test), Q value = 1

Table S1145.  Gene #115: 'LIPI MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 78 102
LIPI MUTATED 6 10 9
LIPI WILD-TYPE 92 68 93
'LIPI MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.325 (Fisher's exact test), Q value = 1

Table S1146.  Gene #115: 'LIPI MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 134 71
LIPI MUTATED 4 12 9
LIPI WILD-TYPE 69 122 62
'LIPI MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.441 (Fisher's exact test), Q value = 1

Table S1147.  Gene #115: 'LIPI MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 117 85
LIPI MUTATED 6 13 5
LIPI WILD-TYPE 61 104 80
'LIPI MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0751 (Fisher's exact test), Q value = 1

Table S1148.  Gene #115: 'LIPI MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 160 82
LIPI MUTATED 4 17 3
LIPI WILD-TYPE 23 143 79
'LIPI MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.295 (Fisher's exact test), Q value = 1

Table S1149.  Gene #115: 'LIPI MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 82 110 77
LIPI MUTATED 7 13 4
LIPI WILD-TYPE 75 97 73
'LIPI MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.149 (Fisher's exact test), Q value = 1

Table S1150.  Gene #115: 'LIPI MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 79 45 120
LIPI MUTATED 3 3 3 15
LIPI WILD-TYPE 22 76 42 105
'C7ORF58 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.659 (Fisher's exact test), Q value = 1

Table S1151.  Gene #116: 'C7ORF58 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
C7ORF58 MUTATED 9 9 6 11
C7ORF58 WILD-TYPE 73 42 41 87
'C7ORF58 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.333 (Fisher's exact test), Q value = 1

Table S1152.  Gene #116: 'C7ORF58 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 95 106
C7ORF58 MUTATED 8 16 11
C7ORF58 WILD-TYPE 69 79 95
'C7ORF58 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0933 (Fisher's exact test), Q value = 1

Table S1153.  Gene #116: 'C7ORF58 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
C7ORF58 MUTATED 8 8 0 7
C7ORF58 WILD-TYPE 38 50 26 31
'C7ORF58 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0273 (Fisher's exact test), Q value = 1

Table S1154.  Gene #116: 'C7ORF58 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 38 70 60
C7ORF58 MUTATED 7 4 12
C7ORF58 WILD-TYPE 31 66 48

Figure S48.  Get High-res Image Gene #116: 'C7ORF58 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'C7ORF58 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.889 (Fisher's exact test), Q value = 1

Table S1155.  Gene #116: 'C7ORF58 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 78 102
C7ORF58 MUTATED 12 11 12
C7ORF58 WILD-TYPE 86 67 90
'C7ORF58 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.948 (Fisher's exact test), Q value = 1

Table S1156.  Gene #116: 'C7ORF58 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 134 71
C7ORF58 MUTATED 9 18 8
C7ORF58 WILD-TYPE 64 116 63
'C7ORF58 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.706 (Fisher's exact test), Q value = 1

Table S1157.  Gene #116: 'C7ORF58 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 117 85
C7ORF58 MUTATED 10 14 9
C7ORF58 WILD-TYPE 57 103 76
'C7ORF58 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.22 (Fisher's exact test), Q value = 1

Table S1158.  Gene #116: 'C7ORF58 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 160 82
C7ORF58 MUTATED 6 19 8
C7ORF58 WILD-TYPE 21 141 74
'C7ORF58 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.912 (Fisher's exact test), Q value = 1

Table S1159.  Gene #116: 'C7ORF58 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 82 110 77
C7ORF58 MUTATED 11 13 9
C7ORF58 WILD-TYPE 71 97 68
'C7ORF58 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.573 (Fisher's exact test), Q value = 1

Table S1160.  Gene #116: 'C7ORF58 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 79 45 120
C7ORF58 MUTATED 5 8 6 14
C7ORF58 WILD-TYPE 20 71 39 106
'COL5A1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.135 (Fisher's exact test), Q value = 1

Table S1161.  Gene #117: 'COL5A1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
COL5A1 MUTATED 17 11 4 24
COL5A1 WILD-TYPE 65 40 43 74
'COL5A1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.379 (Fisher's exact test), Q value = 1

Table S1162.  Gene #117: 'COL5A1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 95 106
COL5A1 MUTATED 12 23 21
COL5A1 WILD-TYPE 65 72 85
'COL5A1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.233 (Fisher's exact test), Q value = 1

Table S1163.  Gene #117: 'COL5A1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
COL5A1 MUTATED 10 10 3 12
COL5A1 WILD-TYPE 36 48 23 26
'COL5A1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.399 (Fisher's exact test), Q value = 1

Table S1164.  Gene #117: 'COL5A1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 38 70 60
COL5A1 MUTATED 7 12 16
COL5A1 WILD-TYPE 31 58 44
'COL5A1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.494 (Fisher's exact test), Q value = 1

Table S1165.  Gene #117: 'COL5A1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 78 102
COL5A1 MUTATED 16 17 23
COL5A1 WILD-TYPE 82 61 79
'COL5A1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.627 (Fisher's exact test), Q value = 1

Table S1166.  Gene #117: 'COL5A1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 134 71
COL5A1 MUTATED 12 28 16
COL5A1 WILD-TYPE 61 106 55
'COL5A1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.618 (Fisher's exact test), Q value = 1

Table S1167.  Gene #117: 'COL5A1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 117 85
COL5A1 MUTATED 13 26 14
COL5A1 WILD-TYPE 54 91 71
'COL5A1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.936 (Fisher's exact test), Q value = 1

Table S1168.  Gene #117: 'COL5A1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 160 82
COL5A1 MUTATED 5 33 15
COL5A1 WILD-TYPE 22 127 67
'COL5A1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.173 (Fisher's exact test), Q value = 1

Table S1169.  Gene #117: 'COL5A1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 82 110 77
COL5A1 MUTATED 20 23 10
COL5A1 WILD-TYPE 62 87 67
'COL5A1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.123 (Fisher's exact test), Q value = 1

Table S1170.  Gene #117: 'COL5A1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 79 45 120
COL5A1 MUTATED 5 14 4 30
COL5A1 WILD-TYPE 20 65 41 90
'SERPINA10 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.965 (Fisher's exact test), Q value = 1

Table S1171.  Gene #118: 'SERPINA10 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
SERPINA10 MUTATED 8 5 4 11
SERPINA10 WILD-TYPE 74 46 43 87
'SERPINA10 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0635 (Fisher's exact test), Q value = 1

Table S1172.  Gene #118: 'SERPINA10 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 95 106
SERPINA10 MUTATED 4 15 9
SERPINA10 WILD-TYPE 73 80 97
'SERPINA10 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.215 (Fisher's exact test), Q value = 1

Table S1173.  Gene #118: 'SERPINA10 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
SERPINA10 MUTATED 6 3 1 6
SERPINA10 WILD-TYPE 40 55 25 32
'SERPINA10 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.305 (Fisher's exact test), Q value = 1

Table S1174.  Gene #118: 'SERPINA10 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 38 70 60
SERPINA10 MUTATED 4 4 8
SERPINA10 WILD-TYPE 34 66 52
'SERPINA10 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.569 (Fisher's exact test), Q value = 1

Table S1175.  Gene #118: 'SERPINA10 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 78 102
SERPINA10 MUTATED 12 8 8
SERPINA10 WILD-TYPE 86 70 94
'SERPINA10 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.544 (Fisher's exact test), Q value = 1

Table S1176.  Gene #118: 'SERPINA10 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 134 71
SERPINA10 MUTATED 9 11 8
SERPINA10 WILD-TYPE 64 123 63
'SERPINA10 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.528 (Fisher's exact test), Q value = 1

Table S1177.  Gene #118: 'SERPINA10 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 117 85
SERPINA10 MUTATED 5 11 11
SERPINA10 WILD-TYPE 62 106 74
'SERPINA10 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.461 (Fisher's exact test), Q value = 1

Table S1178.  Gene #118: 'SERPINA10 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 160 82
SERPINA10 MUTATED 2 14 11
SERPINA10 WILD-TYPE 25 146 71
'SERPINA10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.324 (Fisher's exact test), Q value = 1

Table S1179.  Gene #118: 'SERPINA10 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 82 110 77
SERPINA10 MUTATED 6 10 11
SERPINA10 WILD-TYPE 76 100 66
'SERPINA10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.432 (Fisher's exact test), Q value = 1

Table S1180.  Gene #118: 'SERPINA10 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 79 45 120
SERPINA10 MUTATED 2 11 2 12
SERPINA10 WILD-TYPE 23 68 43 108
'C1ORF127 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.285 (Fisher's exact test), Q value = 1

Table S1181.  Gene #119: 'C1ORF127 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
C1ORF127 MUTATED 8 2 1 9
C1ORF127 WILD-TYPE 74 49 46 89
'C1ORF127 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.538 (Fisher's exact test), Q value = 1

Table S1182.  Gene #119: 'C1ORF127 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 95 106
C1ORF127 MUTATED 4 6 10
C1ORF127 WILD-TYPE 73 89 96
'C1ORF127 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.58 (Fisher's exact test), Q value = 1

Table S1183.  Gene #119: 'C1ORF127 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
C1ORF127 MUTATED 5 4 1 5
C1ORF127 WILD-TYPE 41 54 25 33
'C1ORF127 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0384 (Fisher's exact test), Q value = 1

Table S1184.  Gene #119: 'C1ORF127 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 38 70 60
C1ORF127 MUTATED 4 2 9
C1ORF127 WILD-TYPE 34 68 51

Figure S49.  Get High-res Image Gene #119: 'C1ORF127 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'C1ORF127 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.429 (Fisher's exact test), Q value = 1

Table S1185.  Gene #119: 'C1ORF127 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 78 102
C1ORF127 MUTATED 5 8 7
C1ORF127 WILD-TYPE 93 70 95
'C1ORF127 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.784 (Fisher's exact test), Q value = 1

Table S1186.  Gene #119: 'C1ORF127 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 134 71
C1ORF127 MUTATED 4 10 6
C1ORF127 WILD-TYPE 69 124 65
'C1ORF127 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.478 (Fisher's exact test), Q value = 1

Table S1187.  Gene #119: 'C1ORF127 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 117 85
C1ORF127 MUTATED 7 7 5
C1ORF127 WILD-TYPE 60 110 80
'C1ORF127 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.908 (Fisher's exact test), Q value = 1

Table S1188.  Gene #119: 'C1ORF127 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 160 82
C1ORF127 MUTATED 1 12 6
C1ORF127 WILD-TYPE 26 148 76
'C1ORF127 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.845 (Fisher's exact test), Q value = 1

Table S1189.  Gene #119: 'C1ORF127 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 82 110 77
C1ORF127 MUTATED 5 9 5
C1ORF127 WILD-TYPE 77 101 72
'C1ORF127 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.885 (Fisher's exact test), Q value = 1

Table S1190.  Gene #119: 'C1ORF127 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 79 45 120
C1ORF127 MUTATED 1 6 4 8
C1ORF127 WILD-TYPE 24 73 41 112
'C3ORF71 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.517 (Fisher's exact test), Q value = 1

Table S1191.  Gene #120: 'C3ORF71 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
C3ORF71 MUTATED 0 1 1 2
C3ORF71 WILD-TYPE 82 50 46 96
'C3ORF71 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.385 (Fisher's exact test), Q value = 1

Table S1192.  Gene #120: 'C3ORF71 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 95 106
C3ORF71 MUTATED 2 0 2
C3ORF71 WILD-TYPE 75 95 104
'C3ORF71 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.483 (Fisher's exact test), Q value = 1

Table S1193.  Gene #120: 'C3ORF71 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
C3ORF71 MUTATED 1 3 0 0
C3ORF71 WILD-TYPE 45 55 26 38
'C3ORF71 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.16 (Fisher's exact test), Q value = 1

Table S1194.  Gene #120: 'C3ORF71 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 38 70 60
C3ORF71 MUTATED 1 0 3
C3ORF71 WILD-TYPE 37 70 57
'C3ORF71 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.149 (Fisher's exact test), Q value = 1

Table S1195.  Gene #120: 'C3ORF71 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 78 102
C3ORF71 MUTATED 3 1 0
C3ORF71 WILD-TYPE 95 77 102
'C3ORF71 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.136 (Fisher's exact test), Q value = 1

Table S1196.  Gene #120: 'C3ORF71 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 134 71
C3ORF71 MUTATED 3 1 0
C3ORF71 WILD-TYPE 70 133 71
'C3ORF71 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.819 (Fisher's exact test), Q value = 1

Table S1197.  Gene #120: 'C3ORF71 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 117 85
C3ORF71 MUTATED 1 1 2
C3ORF71 WILD-TYPE 66 116 83
'C3ORF71 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.137 (Fisher's exact test), Q value = 1

Table S1198.  Gene #120: 'C3ORF71 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 160 82
C3ORF71 MUTATED 0 1 3
C3ORF71 WILD-TYPE 27 159 79
'C3ORF71 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.691 (Fisher's exact test), Q value = 1

Table S1199.  Gene #120: 'C3ORF71 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 82 110 77
C3ORF71 MUTATED 1 1 2
C3ORF71 WILD-TYPE 81 109 75
'C3ORF71 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.421 (Fisher's exact test), Q value = 1

Table S1200.  Gene #120: 'C3ORF71 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 79 45 120
C3ORF71 MUTATED 0 3 0 1
C3ORF71 WILD-TYPE 25 76 45 119
'TTN MUTATION STATUS' versus 'CN_CNMF'

P value = 0.838 (Fisher's exact test), Q value = 1

Table S1201.  Gene #121: 'TTN MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
TTN MUTATED 59 35 36 72
TTN WILD-TYPE 23 16 11 26
'TTN MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0026 (Fisher's exact test), Q value = 1

Table S1202.  Gene #121: 'TTN MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 95 106
TTN MUTATED 45 78 79
TTN WILD-TYPE 32 17 27

Figure S50.  Get High-res Image Gene #121: 'TTN MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'TTN MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.456 (Fisher's exact test), Q value = 1

Table S1203.  Gene #121: 'TTN MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
TTN MUTATED 35 38 20 30
TTN WILD-TYPE 11 20 6 8
'TTN MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.32 (Fisher's exact test), Q value = 1

Table S1204.  Gene #121: 'TTN MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 38 70 60
TTN MUTATED 26 49 48
TTN WILD-TYPE 12 21 12
'TTN MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.296 (Fisher's exact test), Q value = 1

Table S1205.  Gene #121: 'TTN MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 78 102
TTN MUTATED 76 57 69
TTN WILD-TYPE 22 21 33
'TTN MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.463 (Fisher's exact test), Q value = 1

Table S1206.  Gene #121: 'TTN MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 134 71
TTN MUTATED 56 98 48
TTN WILD-TYPE 17 36 23
'TTN MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0462 (Fisher's exact test), Q value = 1

Table S1207.  Gene #121: 'TTN MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 117 85
TTN MUTATED 56 79 59
TTN WILD-TYPE 11 38 26

Figure S51.  Get High-res Image Gene #121: 'TTN MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'TTN MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.273 (Fisher's exact test), Q value = 1

Table S1208.  Gene #121: 'TTN MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 160 82
TTN MUTATED 23 112 59
TTN WILD-TYPE 4 48 23
'TTN MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.213 (Fisher's exact test), Q value = 1

Table S1209.  Gene #121: 'TTN MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 82 110 77
TTN MUTATED 65 76 53
TTN WILD-TYPE 17 34 24
'TTN MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.574 (Fisher's exact test), Q value = 1

Table S1210.  Gene #121: 'TTN MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 79 45 120
TTN MUTATED 21 56 31 86
TTN WILD-TYPE 4 23 14 34
'IDO2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.613 (Fisher's exact test), Q value = 1

Table S1211.  Gene #122: 'IDO2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
IDO2 MUTATED 5 3 1 8
IDO2 WILD-TYPE 77 48 46 90
'IDO2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.263 (Fisher's exact test), Q value = 1

Table S1212.  Gene #122: 'IDO2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 95 106
IDO2 MUTATED 2 6 9
IDO2 WILD-TYPE 75 89 97
'IDO2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0969 (Fisher's exact test), Q value = 1

Table S1213.  Gene #122: 'IDO2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
IDO2 MUTATED 5 3 0 0
IDO2 WILD-TYPE 41 55 26 38
'IDO2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.464 (Fisher's exact test), Q value = 1

Table S1214.  Gene #122: 'IDO2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 38 70 60
IDO2 MUTATED 3 2 3
IDO2 WILD-TYPE 35 68 57
'IDO2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.786 (Fisher's exact test), Q value = 1

Table S1215.  Gene #122: 'IDO2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 78 102
IDO2 MUTATED 5 6 6
IDO2 WILD-TYPE 93 72 96
'IDO2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.766 (Fisher's exact test), Q value = 1

Table S1216.  Gene #122: 'IDO2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 134 71
IDO2 MUTATED 3 9 5
IDO2 WILD-TYPE 70 125 66
'IDO2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.417 (Fisher's exact test), Q value = 1

Table S1217.  Gene #122: 'IDO2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 117 85
IDO2 MUTATED 2 8 7
IDO2 WILD-TYPE 65 109 78
'IDO2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.312 (Fisher's exact test), Q value = 1

Table S1218.  Gene #122: 'IDO2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 160 82
IDO2 MUTATED 0 10 7
IDO2 WILD-TYPE 27 150 75
'IDO2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.437 (Fisher's exact test), Q value = 1

Table S1219.  Gene #122: 'IDO2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 82 110 77
IDO2 MUTATED 5 5 7
IDO2 WILD-TYPE 77 105 70
'IDO2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.346 (Fisher's exact test), Q value = 1

Table S1220.  Gene #122: 'IDO2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 79 45 120
IDO2 MUTATED 0 7 4 6
IDO2 WILD-TYPE 25 72 41 114
'DGAT2L6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.666 (Fisher's exact test), Q value = 1

Table S1221.  Gene #123: 'DGAT2L6 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
DGAT2L6 MUTATED 5 1 2 3
DGAT2L6 WILD-TYPE 77 50 45 95
'DGAT2L6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.431 (Fisher's exact test), Q value = 1

Table S1222.  Gene #123: 'DGAT2L6 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 95 106
DGAT2L6 MUTATED 2 6 3
DGAT2L6 WILD-TYPE 75 89 103
'DGAT2L6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.501 (Fisher's exact test), Q value = 1

Table S1223.  Gene #123: 'DGAT2L6 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
DGAT2L6 MUTATED 2 2 1 4
DGAT2L6 WILD-TYPE 44 56 25 34
'DGAT2L6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.688 (Fisher's exact test), Q value = 1

Table S1224.  Gene #123: 'DGAT2L6 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 38 70 60
DGAT2L6 MUTATED 1 5 3
DGAT2L6 WILD-TYPE 37 65 57
'DGAT2L6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.22 (Fisher's exact test), Q value = 1

Table S1225.  Gene #123: 'DGAT2L6 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 78 102
DGAT2L6 MUTATED 2 2 7
DGAT2L6 WILD-TYPE 96 76 95
'DGAT2L6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.412 (Fisher's exact test), Q value = 1

Table S1226.  Gene #123: 'DGAT2L6 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 134 71
DGAT2L6 MUTATED 1 6 4
DGAT2L6 WILD-TYPE 72 128 67
'DGAT2L6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.792 (Fisher's exact test), Q value = 1

Table S1227.  Gene #123: 'DGAT2L6 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 117 85
DGAT2L6 MUTATED 2 6 3
DGAT2L6 WILD-TYPE 65 111 82
'DGAT2L6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.73 (Fisher's exact test), Q value = 1

Table S1228.  Gene #123: 'DGAT2L6 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 160 82
DGAT2L6 MUTATED 1 8 2
DGAT2L6 WILD-TYPE 26 152 80
'DGAT2L6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.191 (Fisher's exact test), Q value = 1

Table S1229.  Gene #123: 'DGAT2L6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 82 110 77
DGAT2L6 MUTATED 1 7 3
DGAT2L6 WILD-TYPE 81 103 74
'DGAT2L6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.679 (Fisher's exact test), Q value = 1

Table S1230.  Gene #123: 'DGAT2L6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 79 45 120
DGAT2L6 MUTATED 1 2 1 7
DGAT2L6 WILD-TYPE 24 77 44 113
'SLC9A4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.256 (Fisher's exact test), Q value = 1

Table S1231.  Gene #124: 'SLC9A4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
SLC9A4 MUTATED 12 2 4 11
SLC9A4 WILD-TYPE 70 49 43 87
'SLC9A4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0378 (Fisher's exact test), Q value = 1

Table S1232.  Gene #124: 'SLC9A4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 95 106
SLC9A4 MUTATED 4 16 9
SLC9A4 WILD-TYPE 73 79 97

Figure S52.  Get High-res Image Gene #124: 'SLC9A4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'SLC9A4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.815 (Fisher's exact test), Q value = 1

Table S1233.  Gene #124: 'SLC9A4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
SLC9A4 MUTATED 5 8 2 3
SLC9A4 WILD-TYPE 41 50 24 35
'SLC9A4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1234.  Gene #124: 'SLC9A4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 38 70 60
SLC9A4 MUTATED 4 8 6
SLC9A4 WILD-TYPE 34 62 54
'SLC9A4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.78 (Fisher's exact test), Q value = 1

Table S1235.  Gene #124: 'SLC9A4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 78 102
SLC9A4 MUTATED 11 9 9
SLC9A4 WILD-TYPE 87 69 93
'SLC9A4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.657 (Fisher's exact test), Q value = 1

Table S1236.  Gene #124: 'SLC9A4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 134 71
SLC9A4 MUTATED 8 12 9
SLC9A4 WILD-TYPE 65 122 62
'SLC9A4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.467 (Fisher's exact test), Q value = 1

Table S1237.  Gene #124: 'SLC9A4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 117 85
SLC9A4 MUTATED 8 14 6
SLC9A4 WILD-TYPE 59 103 79
'SLC9A4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.775 (Fisher's exact test), Q value = 1

Table S1238.  Gene #124: 'SLC9A4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 160 82
SLC9A4 MUTATED 3 18 7
SLC9A4 WILD-TYPE 24 142 75
'SLC9A4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.376 (Fisher's exact test), Q value = 1

Table S1239.  Gene #124: 'SLC9A4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 82 110 77
SLC9A4 MUTATED 9 14 5
SLC9A4 WILD-TYPE 73 96 72
'SLC9A4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.69 (Fisher's exact test), Q value = 1

Table S1240.  Gene #124: 'SLC9A4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 79 45 120
SLC9A4 MUTATED 3 7 3 15
SLC9A4 WILD-TYPE 22 72 42 105
'RPAP1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.834 (Fisher's exact test), Q value = 1

Table S1241.  Gene #125: 'RPAP1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
RPAP1 MUTATED 4 2 1 6
RPAP1 WILD-TYPE 78 49 46 92
'RPAP1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.473 (Fisher's exact test), Q value = 1

Table S1242.  Gene #125: 'RPAP1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 95 106
RPAP1 MUTATED 2 4 7
RPAP1 WILD-TYPE 75 91 99
'RPAP1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.474 (Fisher's exact test), Q value = 1

Table S1243.  Gene #125: 'RPAP1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
RPAP1 MUTATED 2 2 3 2
RPAP1 WILD-TYPE 44 56 23 36
'RPAP1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.303 (Fisher's exact test), Q value = 1

Table S1244.  Gene #125: 'RPAP1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 38 70 60
RPAP1 MUTATED 3 5 1
RPAP1 WILD-TYPE 35 65 59
'RPAP1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.94 (Fisher's exact test), Q value = 1

Table S1245.  Gene #125: 'RPAP1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 78 102
RPAP1 MUTATED 4 4 5
RPAP1 WILD-TYPE 94 74 97
'RPAP1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.872 (Fisher's exact test), Q value = 1

Table S1246.  Gene #125: 'RPAP1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 134 71
RPAP1 MUTATED 3 6 4
RPAP1 WILD-TYPE 70 128 67
'RPAP1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.867 (Fisher's exact test), Q value = 1

Table S1247.  Gene #125: 'RPAP1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 117 85
RPAP1 MUTATED 2 6 4
RPAP1 WILD-TYPE 65 111 81
'RPAP1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1248.  Gene #125: 'RPAP1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 160 82
RPAP1 MUTATED 1 7 4
RPAP1 WILD-TYPE 26 153 78
'RPAP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.426 (Fisher's exact test), Q value = 1

Table S1249.  Gene #125: 'RPAP1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 82 110 77
RPAP1 MUTATED 2 7 3
RPAP1 WILD-TYPE 80 103 74
'RPAP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.969 (Fisher's exact test), Q value = 1

Table S1250.  Gene #125: 'RPAP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 79 45 120
RPAP1 MUTATED 1 4 2 5
RPAP1 WILD-TYPE 24 75 43 115
'MKX MUTATION STATUS' versus 'CN_CNMF'

P value = 0.77 (Fisher's exact test), Q value = 1

Table S1251.  Gene #126: 'MKX MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
MKX MUTATED 5 2 2 8
MKX WILD-TYPE 77 49 45 90
'MKX MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.597 (Fisher's exact test), Q value = 1

Table S1252.  Gene #126: 'MKX MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 95 106
MKX MUTATED 3 6 8
MKX WILD-TYPE 74 89 98
'MKX MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1253.  Gene #126: 'MKX MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
MKX MUTATED 3 4 2 3
MKX WILD-TYPE 43 54 24 35
'MKX MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.64 (Fisher's exact test), Q value = 1

Table S1254.  Gene #126: 'MKX MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 38 70 60
MKX MUTATED 2 4 6
MKX WILD-TYPE 36 66 54
'MKX MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0185 (Fisher's exact test), Q value = 1

Table S1255.  Gene #126: 'MKX MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 78 102
MKX MUTATED 1 7 9
MKX WILD-TYPE 97 71 93

Figure S53.  Get High-res Image Gene #126: 'MKX MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'MKX MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.122 (Fisher's exact test), Q value = 1

Table S1256.  Gene #126: 'MKX MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 134 71
MKX MUTATED 1 11 5
MKX WILD-TYPE 72 123 66
'MKX MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.174 (Fisher's exact test), Q value = 1

Table S1257.  Gene #126: 'MKX MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 117 85
MKX MUTATED 6 9 2
MKX WILD-TYPE 61 108 83
'MKX MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.131 (Fisher's exact test), Q value = 1

Table S1258.  Gene #126: 'MKX MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 160 82
MKX MUTATED 3 12 2
MKX WILD-TYPE 24 148 80
'MKX MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.119 (Fisher's exact test), Q value = 1

Table S1259.  Gene #126: 'MKX MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 82 110 77
MKX MUTATED 4 11 2
MKX WILD-TYPE 78 99 75
'MKX MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.02 (Fisher's exact test), Q value = 1

Table S1260.  Gene #126: 'MKX MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 79 45 120
MKX MUTATED 3 2 0 12
MKX WILD-TYPE 22 77 45 108

Figure S54.  Get High-res Image Gene #126: 'MKX MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'FAM19A1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.122 (Fisher's exact test), Q value = 1

Table S1261.  Gene #127: 'FAM19A1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
FAM19A1 MUTATED 7 1 0 5
FAM19A1 WILD-TYPE 75 50 47 93
'FAM19A1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.939 (Fisher's exact test), Q value = 1

Table S1262.  Gene #127: 'FAM19A1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 95 106
FAM19A1 MUTATED 3 5 5
FAM19A1 WILD-TYPE 74 90 101
'FAM19A1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.576 (Fisher's exact test), Q value = 1

Table S1263.  Gene #127: 'FAM19A1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
FAM19A1 MUTATED 3 1 1 2
FAM19A1 WILD-TYPE 43 57 25 36
'FAM19A1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.156 (Fisher's exact test), Q value = 1

Table S1264.  Gene #127: 'FAM19A1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 38 70 60
FAM19A1 MUTATED 1 1 5
FAM19A1 WILD-TYPE 37 69 55
'FAM19A1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.588 (Fisher's exact test), Q value = 1

Table S1265.  Gene #127: 'FAM19A1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 78 102
FAM19A1 MUTATED 3 5 5
FAM19A1 WILD-TYPE 95 73 97
'FAM19A1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1266.  Gene #127: 'FAM19A1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 134 71
FAM19A1 MUTATED 3 7 3
FAM19A1 WILD-TYPE 70 127 68
'FAM19A1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.77 (Fisher's exact test), Q value = 1

Table S1267.  Gene #127: 'FAM19A1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 117 85
FAM19A1 MUTATED 3 7 3
FAM19A1 WILD-TYPE 64 110 82
'FAM19A1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.695 (Fisher's exact test), Q value = 1

Table S1268.  Gene #127: 'FAM19A1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 160 82
FAM19A1 MUTATED 2 8 3
FAM19A1 WILD-TYPE 25 152 79
'FAM19A1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.937 (Fisher's exact test), Q value = 1

Table S1269.  Gene #127: 'FAM19A1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 82 110 77
FAM19A1 MUTATED 4 6 3
FAM19A1 WILD-TYPE 78 104 74
'FAM19A1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.218 (Fisher's exact test), Q value = 1

Table S1270.  Gene #127: 'FAM19A1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 79 45 120
FAM19A1 MUTATED 2 3 0 8
FAM19A1 WILD-TYPE 23 76 45 112
'GALNT14 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.54 (Fisher's exact test), Q value = 1

Table S1271.  Gene #128: 'GALNT14 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
GALNT14 MUTATED 9 2 3 7
GALNT14 WILD-TYPE 73 49 44 91
'GALNT14 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.931 (Fisher's exact test), Q value = 1

Table S1272.  Gene #128: 'GALNT14 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 95 106
GALNT14 MUTATED 5 8 8
GALNT14 WILD-TYPE 72 87 98
'GALNT14 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.402 (Fisher's exact test), Q value = 1

Table S1273.  Gene #128: 'GALNT14 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
GALNT14 MUTATED 5 4 0 3
GALNT14 WILD-TYPE 41 54 26 35
'GALNT14 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1274.  Gene #128: 'GALNT14 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 38 70 60
GALNT14 MUTATED 3 5 4
GALNT14 WILD-TYPE 35 65 56
'GALNT14 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.217 (Fisher's exact test), Q value = 1

Table S1275.  Gene #128: 'GALNT14 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 78 102
GALNT14 MUTATED 7 3 11
GALNT14 WILD-TYPE 91 75 91
'GALNT14 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.207 (Fisher's exact test), Q value = 1

Table S1276.  Gene #128: 'GALNT14 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 134 71
GALNT14 MUTATED 4 8 9
GALNT14 WILD-TYPE 69 126 62
'GALNT14 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.733 (Fisher's exact test), Q value = 1

Table S1277.  Gene #128: 'GALNT14 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 117 85
GALNT14 MUTATED 6 9 5
GALNT14 WILD-TYPE 61 108 80
'GALNT14 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.541 (Fisher's exact test), Q value = 1

Table S1278.  Gene #128: 'GALNT14 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 160 82
GALNT14 MUTATED 2 14 4
GALNT14 WILD-TYPE 25 146 78
'GALNT14 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.551 (Fisher's exact test), Q value = 1

Table S1279.  Gene #128: 'GALNT14 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 82 110 77
GALNT14 MUTATED 4 10 6
GALNT14 WILD-TYPE 78 100 71
'GALNT14 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.778 (Fisher's exact test), Q value = 1

Table S1280.  Gene #128: 'GALNT14 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 79 45 120
GALNT14 MUTATED 2 4 4 10
GALNT14 WILD-TYPE 23 75 41 110
'CERKL MUTATION STATUS' versus 'CN_CNMF'

P value = 0.342 (Fisher's exact test), Q value = 1

Table S1281.  Gene #129: 'CERKL MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
CERKL MUTATED 7 2 5 4
CERKL WILD-TYPE 75 49 42 94
'CERKL MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0438 (Fisher's exact test), Q value = 1

Table S1282.  Gene #129: 'CERKL MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 95 106
CERKL MUTATED 4 11 3
CERKL WILD-TYPE 73 84 103

Figure S55.  Get High-res Image Gene #129: 'CERKL MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'CERKL MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.768 (Fisher's exact test), Q value = 1

Table S1283.  Gene #129: 'CERKL MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
CERKL MUTATED 3 2 2 3
CERKL WILD-TYPE 43 56 24 35
'CERKL MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.916 (Fisher's exact test), Q value = 1

Table S1284.  Gene #129: 'CERKL MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 38 70 60
CERKL MUTATED 2 5 3
CERKL WILD-TYPE 36 65 57
'CERKL MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.367 (Fisher's exact test), Q value = 1

Table S1285.  Gene #129: 'CERKL MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 78 102
CERKL MUTATED 9 3 6
CERKL WILD-TYPE 89 75 96
'CERKL MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.474 (Fisher's exact test), Q value = 1

Table S1286.  Gene #129: 'CERKL MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 134 71
CERKL MUTATED 7 7 4
CERKL WILD-TYPE 66 127 67
'CERKL MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1287.  Gene #129: 'CERKL MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 117 85
CERKL MUTATED 4 8 5
CERKL WILD-TYPE 63 109 80
'CERKL MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.708 (Fisher's exact test), Q value = 1

Table S1288.  Gene #129: 'CERKL MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 160 82
CERKL MUTATED 2 9 6
CERKL WILD-TYPE 25 151 76
'CERKL MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1289.  Gene #129: 'CERKL MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 82 110 77
CERKL MUTATED 5 7 5
CERKL WILD-TYPE 77 103 72
'CERKL MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.648 (Fisher's exact test), Q value = 1

Table S1290.  Gene #129: 'CERKL MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 79 45 120
CERKL MUTATED 2 6 1 8
CERKL WILD-TYPE 23 73 44 112
'OR4K2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.712 (Fisher's exact test), Q value = 1

Table S1291.  Gene #130: 'OR4K2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
OR4K2 MUTATED 9 4 3 12
OR4K2 WILD-TYPE 73 47 44 86
'OR4K2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0014 (Fisher's exact test), Q value = 1

Table S1292.  Gene #130: 'OR4K2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 95 106
OR4K2 MUTATED 1 16 11
OR4K2 WILD-TYPE 76 79 95

Figure S56.  Get High-res Image Gene #130: 'OR4K2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'OR4K2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.841 (Fisher's exact test), Q value = 1

Table S1293.  Gene #130: 'OR4K2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
OR4K2 MUTATED 6 7 2 3
OR4K2 WILD-TYPE 40 51 24 35
'OR4K2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0141 (Fisher's exact test), Q value = 1

Table S1294.  Gene #130: 'OR4K2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 38 70 60
OR4K2 MUTATED 1 5 12
OR4K2 WILD-TYPE 37 65 48

Figure S57.  Get High-res Image Gene #130: 'OR4K2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'OR4K2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.641 (Fisher's exact test), Q value = 1

Table S1295.  Gene #130: 'OR4K2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 78 102
OR4K2 MUTATED 9 10 9
OR4K2 WILD-TYPE 89 68 93
'OR4K2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.398 (Fisher's exact test), Q value = 1

Table S1296.  Gene #130: 'OR4K2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 134 71
OR4K2 MUTATED 5 17 6
OR4K2 WILD-TYPE 68 117 65
'OR4K2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.256 (Fisher's exact test), Q value = 1

Table S1297.  Gene #130: 'OR4K2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 117 85
OR4K2 MUTATED 10 10 6
OR4K2 WILD-TYPE 57 107 79
'OR4K2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.523 (Fisher's exact test), Q value = 1

Table S1298.  Gene #130: 'OR4K2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 160 82
OR4K2 MUTATED 4 14 8
OR4K2 WILD-TYPE 23 146 74
'OR4K2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.627 (Fisher's exact test), Q value = 1

Table S1299.  Gene #130: 'OR4K2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 82 110 77
OR4K2 MUTATED 10 10 6
OR4K2 WILD-TYPE 72 100 71
'OR4K2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.444 (Fisher's exact test), Q value = 1

Table S1300.  Gene #130: 'OR4K2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 79 45 120
OR4K2 MUTATED 4 8 2 12
OR4K2 WILD-TYPE 21 71 43 108
'GK2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.533 (Fisher's exact test), Q value = 1

Table S1301.  Gene #131: 'GK2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
GK2 MUTATED 7 6 8 11
GK2 WILD-TYPE 75 45 39 87
'GK2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.622 (Fisher's exact test), Q value = 1

Table S1302.  Gene #131: 'GK2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 95 106
GK2 MUTATED 9 13 10
GK2 WILD-TYPE 68 82 96
'GK2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.326 (Fisher's exact test), Q value = 1

Table S1303.  Gene #131: 'GK2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
GK2 MUTATED 8 5 1 5
GK2 WILD-TYPE 38 53 25 33
'GK2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.439 (Fisher's exact test), Q value = 1

Table S1304.  Gene #131: 'GK2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 38 70 60
GK2 MUTATED 2 9 8
GK2 WILD-TYPE 36 61 52
'GK2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.946 (Fisher's exact test), Q value = 1

Table S1305.  Gene #131: 'GK2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 78 102
GK2 MUTATED 12 8 12
GK2 WILD-TYPE 86 70 90
'GK2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.222 (Fisher's exact test), Q value = 1

Table S1306.  Gene #131: 'GK2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 134 71
GK2 MUTATED 11 11 10
GK2 WILD-TYPE 62 123 61
'GK2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.2 (Fisher's exact test), Q value = 1

Table S1307.  Gene #131: 'GK2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 117 85
GK2 MUTATED 4 17 11
GK2 WILD-TYPE 63 100 74
'GK2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.746 (Fisher's exact test), Q value = 1

Table S1308.  Gene #131: 'GK2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 160 82
GK2 MUTATED 2 19 11
GK2 WILD-TYPE 25 141 71
'GK2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.778 (Fisher's exact test), Q value = 1

Table S1309.  Gene #131: 'GK2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 82 110 77
GK2 MUTATED 8 14 10
GK2 WILD-TYPE 74 96 67
'GK2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.338 (Fisher's exact test), Q value = 1

Table S1310.  Gene #131: 'GK2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 79 45 120
GK2 MUTATED 1 10 3 18
GK2 WILD-TYPE 24 69 42 102
'C12ORF50 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.561 (Fisher's exact test), Q value = 1

Table S1311.  Gene #132: 'C12ORF50 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
C12ORF50 MUTATED 9 3 2 9
C12ORF50 WILD-TYPE 73 48 45 89
'C12ORF50 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.694 (Fisher's exact test), Q value = 1

Table S1312.  Gene #132: 'C12ORF50 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 95 106
C12ORF50 MUTATED 7 9 7
C12ORF50 WILD-TYPE 70 86 99
'C12ORF50 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.573 (Fisher's exact test), Q value = 1

Table S1313.  Gene #132: 'C12ORF50 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
C12ORF50 MUTATED 5 4 4 5
C12ORF50 WILD-TYPE 41 54 22 33
'C12ORF50 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1314.  Gene #132: 'C12ORF50 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 38 70 60
C12ORF50 MUTATED 4 8 6
C12ORF50 WILD-TYPE 34 62 54
'C12ORF50 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1315.  Gene #132: 'C12ORF50 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 78 102
C12ORF50 MUTATED 8 6 9
C12ORF50 WILD-TYPE 90 72 93
'C12ORF50 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.677 (Fisher's exact test), Q value = 1

Table S1316.  Gene #132: 'C12ORF50 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 134 71
C12ORF50 MUTATED 7 12 4
C12ORF50 WILD-TYPE 66 122 67
'C12ORF50 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.577 (Fisher's exact test), Q value = 1

Table S1317.  Gene #132: 'C12ORF50 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 117 85
C12ORF50 MUTATED 4 9 9
C12ORF50 WILD-TYPE 63 108 76
'C12ORF50 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.921 (Fisher's exact test), Q value = 1

Table S1318.  Gene #132: 'C12ORF50 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 160 82
C12ORF50 MUTATED 2 14 6
C12ORF50 WILD-TYPE 25 146 76
'C12ORF50 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.4 (Fisher's exact test), Q value = 1

Table S1319.  Gene #132: 'C12ORF50 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 82 110 77
C12ORF50 MUTATED 4 11 7
C12ORF50 WILD-TYPE 78 99 70
'C12ORF50 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1320.  Gene #132: 'C12ORF50 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 79 45 120
C12ORF50 MUTATED 2 6 4 10
C12ORF50 WILD-TYPE 23 73 41 110
'ZIM3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.681 (Fisher's exact test), Q value = 1

Table S1321.  Gene #133: 'ZIM3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
ZIM3 MUTATED 7 3 6 10
ZIM3 WILD-TYPE 75 48 41 88
'ZIM3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.27 (Fisher's exact test), Q value = 1

Table S1322.  Gene #133: 'ZIM3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 95 106
ZIM3 MUTATED 4 9 13
ZIM3 WILD-TYPE 73 86 93
'ZIM3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.579 (Fisher's exact test), Q value = 1

Table S1323.  Gene #133: 'ZIM3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
ZIM3 MUTATED 6 4 1 3
ZIM3 WILD-TYPE 40 54 25 35
'ZIM3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.256 (Fisher's exact test), Q value = 1

Table S1324.  Gene #133: 'ZIM3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 38 70 60
ZIM3 MUTATED 4 3 7
ZIM3 WILD-TYPE 34 67 53
'ZIM3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.26 (Fisher's exact test), Q value = 1

Table S1325.  Gene #133: 'ZIM3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 78 102
ZIM3 MUTATED 10 10 6
ZIM3 WILD-TYPE 88 68 96
'ZIM3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.698 (Fisher's exact test), Q value = 1

Table S1326.  Gene #133: 'ZIM3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 134 71
ZIM3 MUTATED 8 13 5
ZIM3 WILD-TYPE 65 121 66
'ZIM3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.225 (Fisher's exact test), Q value = 1

Table S1327.  Gene #133: 'ZIM3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 117 85
ZIM3 MUTATED 6 8 12
ZIM3 WILD-TYPE 61 109 73
'ZIM3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.213 (Fisher's exact test), Q value = 1

Table S1328.  Gene #133: 'ZIM3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 160 82
ZIM3 MUTATED 2 12 12
ZIM3 WILD-TYPE 25 148 70
'ZIM3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.191 (Fisher's exact test), Q value = 1

Table S1329.  Gene #133: 'ZIM3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 82 110 77
ZIM3 MUTATED 8 7 11
ZIM3 WILD-TYPE 74 103 66
'ZIM3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.192 (Fisher's exact test), Q value = 1

Table S1330.  Gene #133: 'ZIM3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 79 45 120
ZIM3 MUTATED 2 11 6 7
ZIM3 WILD-TYPE 23 68 39 113
'MAP2K1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0637 (Fisher's exact test), Q value = 1

Table S1331.  Gene #134: 'MAP2K1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
MAP2K1 MUTATED 1 1 4 8
MAP2K1 WILD-TYPE 81 50 43 90
'MAP2K1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00749 (Fisher's exact test), Q value = 1

Table S1332.  Gene #134: 'MAP2K1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 95 106
MAP2K1 MUTATED 2 1 11
MAP2K1 WILD-TYPE 75 94 95

Figure S58.  Get High-res Image Gene #134: 'MAP2K1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'MAP2K1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.364 (Fisher's exact test), Q value = 1

Table S1333.  Gene #134: 'MAP2K1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
MAP2K1 MUTATED 5 2 1 1
MAP2K1 WILD-TYPE 41 56 25 37
'MAP2K1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0501 (Fisher's exact test), Q value = 1

Table S1334.  Gene #134: 'MAP2K1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 38 70 60
MAP2K1 MUTATED 5 3 1
MAP2K1 WILD-TYPE 33 67 59
'MAP2K1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.444 (Fisher's exact test), Q value = 1

Table S1335.  Gene #134: 'MAP2K1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 78 102
MAP2K1 MUTATED 6 5 3
MAP2K1 WILD-TYPE 92 73 99
'MAP2K1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.371 (Fisher's exact test), Q value = 1

Table S1336.  Gene #134: 'MAP2K1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 134 71
MAP2K1 MUTATED 6 6 2
MAP2K1 WILD-TYPE 67 128 69
'MAP2K1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.13 (Fisher's exact test), Q value = 1

Table S1337.  Gene #134: 'MAP2K1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 117 85
MAP2K1 MUTATED 2 4 8
MAP2K1 WILD-TYPE 65 113 77
'MAP2K1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.319 (Fisher's exact test), Q value = 1

Table S1338.  Gene #134: 'MAP2K1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 160 82
MAP2K1 MUTATED 2 6 6
MAP2K1 WILD-TYPE 25 154 76
'MAP2K1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.184 (Fisher's exact test), Q value = 1

Table S1339.  Gene #134: 'MAP2K1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 82 110 77
MAP2K1 MUTATED 2 5 7
MAP2K1 WILD-TYPE 80 105 70
'MAP2K1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.505 (Fisher's exact test), Q value = 1

Table S1340.  Gene #134: 'MAP2K1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 79 45 120
MAP2K1 MUTATED 2 5 3 4
MAP2K1 WILD-TYPE 23 74 42 116
'DAAM2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.514 (Fisher's exact test), Q value = 1

Table S1341.  Gene #135: 'DAAM2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
DAAM2 MUTATED 3 1 2 1
DAAM2 WILD-TYPE 79 50 45 97
'DAAM2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0384 (Fisher's exact test), Q value = 1

Table S1342.  Gene #135: 'DAAM2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 95 106
DAAM2 MUTATED 2 5 0
DAAM2 WILD-TYPE 75 90 106

Figure S59.  Get High-res Image Gene #135: 'DAAM2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'DAAM2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.119 (Fisher's exact test), Q value = 1

Table S1343.  Gene #135: 'DAAM2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 78 102
DAAM2 MUTATED 5 0 2
DAAM2 WILD-TYPE 93 78 100
'DAAM2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0326 (Fisher's exact test), Q value = 1

Table S1344.  Gene #135: 'DAAM2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 134 71
DAAM2 MUTATED 5 2 0
DAAM2 WILD-TYPE 68 132 71

Figure S60.  Get High-res Image Gene #135: 'DAAM2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'DAAM2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.487 (Fisher's exact test), Q value = 1

Table S1345.  Gene #135: 'DAAM2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 117 85
DAAM2 MUTATED 3 3 1
DAAM2 WILD-TYPE 64 114 84
'DAAM2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.854 (Fisher's exact test), Q value = 1

Table S1346.  Gene #135: 'DAAM2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 160 82
DAAM2 MUTATED 1 4 2
DAAM2 WILD-TYPE 26 156 80
'DAAM2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.426 (Fisher's exact test), Q value = 1

Table S1347.  Gene #135: 'DAAM2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 82 110 77
DAAM2 MUTATED 4 2 1
DAAM2 WILD-TYPE 78 108 76
'DAAM2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.886 (Fisher's exact test), Q value = 1

Table S1348.  Gene #135: 'DAAM2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 79 45 120
DAAM2 MUTATED 1 2 1 3
DAAM2 WILD-TYPE 24 77 44 117
'GZMA MUTATION STATUS' versus 'CN_CNMF'

P value = 0.652 (Fisher's exact test), Q value = 1

Table S1349.  Gene #136: 'GZMA MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
GZMA MUTATED 3 1 1 6
GZMA WILD-TYPE 79 50 46 92
'GZMA MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.742 (Fisher's exact test), Q value = 1

Table S1350.  Gene #136: 'GZMA MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 95 106
GZMA MUTATED 2 5 4
GZMA WILD-TYPE 75 90 102
'GZMA MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.726 (Fisher's exact test), Q value = 1

Table S1351.  Gene #136: 'GZMA MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
GZMA MUTATED 4 2 1 2
GZMA WILD-TYPE 42 56 25 36
'GZMA MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.827 (Fisher's exact test), Q value = 1

Table S1352.  Gene #136: 'GZMA MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 38 70 60
GZMA MUTATED 1 4 4
GZMA WILD-TYPE 37 66 56
'GZMA MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.926 (Fisher's exact test), Q value = 1

Table S1353.  Gene #136: 'GZMA MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 78 102
GZMA MUTATED 3 3 5
GZMA WILD-TYPE 95 75 97
'GZMA MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.673 (Fisher's exact test), Q value = 1

Table S1354.  Gene #136: 'GZMA MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 134 71
GZMA MUTATED 2 5 4
GZMA WILD-TYPE 71 129 67
'GZMA MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.579 (Fisher's exact test), Q value = 1

Table S1355.  Gene #136: 'GZMA MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 117 85
GZMA MUTATED 4 5 2
GZMA WILD-TYPE 63 112 83
'GZMA MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1356.  Gene #136: 'GZMA MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 160 82
GZMA MUTATED 1 7 3
GZMA WILD-TYPE 26 153 79
'GZMA MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.738 (Fisher's exact test), Q value = 1

Table S1357.  Gene #136: 'GZMA MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 82 110 77
GZMA MUTATED 3 6 2
GZMA WILD-TYPE 79 104 75
'GZMA MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.443 (Fisher's exact test), Q value = 1

Table S1358.  Gene #136: 'GZMA MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 79 45 120
GZMA MUTATED 1 3 0 7
GZMA WILD-TYPE 24 76 45 113
'ACTC1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0877 (Fisher's exact test), Q value = 1

Table S1359.  Gene #137: 'ACTC1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
ACTC1 MUTATED 7 0 1 7
ACTC1 WILD-TYPE 75 51 46 91
'ACTC1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.111 (Fisher's exact test), Q value = 1

Table S1360.  Gene #137: 'ACTC1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 95 106
ACTC1 MUTATED 1 8 6
ACTC1 WILD-TYPE 76 87 100
'ACTC1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.466 (Fisher's exact test), Q value = 1

Table S1361.  Gene #137: 'ACTC1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
ACTC1 MUTATED 5 2 1 2
ACTC1 WILD-TYPE 41 56 25 36
'ACTC1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.768 (Fisher's exact test), Q value = 1

Table S1362.  Gene #137: 'ACTC1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 38 70 60
ACTC1 MUTATED 3 3 4
ACTC1 WILD-TYPE 35 67 56
'ACTC1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.389 (Fisher's exact test), Q value = 1

Table S1363.  Gene #137: 'ACTC1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 78 102
ACTC1 MUTATED 3 6 6
ACTC1 WILD-TYPE 95 72 96
'ACTC1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0798 (Fisher's exact test), Q value = 1

Table S1364.  Gene #137: 'ACTC1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 134 71
ACTC1 MUTATED 1 7 7
ACTC1 WILD-TYPE 72 127 64
'ACTC1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.445 (Fisher's exact test), Q value = 1

Table S1365.  Gene #137: 'ACTC1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 117 85
ACTC1 MUTATED 3 5 7
ACTC1 WILD-TYPE 64 112 78
'ACTC1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.328 (Fisher's exact test), Q value = 1

Table S1366.  Gene #137: 'ACTC1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 160 82
ACTC1 MUTATED 3 9 3
ACTC1 WILD-TYPE 24 151 79
'ACTC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.532 (Fisher's exact test), Q value = 1

Table S1367.  Gene #137: 'ACTC1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 82 110 77
ACTC1 MUTATED 3 6 6
ACTC1 WILD-TYPE 79 104 71
'ACTC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.068 (Fisher's exact test), Q value = 1

Table S1368.  Gene #137: 'ACTC1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 79 45 120
ACTC1 MUTATED 2 3 6 4
ACTC1 WILD-TYPE 23 76 39 116
'ADAMTS2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0877 (Fisher's exact test), Q value = 1

Table S1369.  Gene #138: 'ADAMTS2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
ADAMTS2 MUTATED 11 2 2 14
ADAMTS2 WILD-TYPE 71 49 45 84
'ADAMTS2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.473 (Fisher's exact test), Q value = 1

Table S1370.  Gene #138: 'ADAMTS2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 95 106
ADAMTS2 MUTATED 7 13 9
ADAMTS2 WILD-TYPE 70 82 97
'ADAMTS2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.205 (Fisher's exact test), Q value = 1

Table S1371.  Gene #138: 'ADAMTS2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
ADAMTS2 MUTATED 6 10 1 2
ADAMTS2 WILD-TYPE 40 48 25 36
'ADAMTS2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.91 (Fisher's exact test), Q value = 1

Table S1372.  Gene #138: 'ADAMTS2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 38 70 60
ADAMTS2 MUTATED 4 9 6
ADAMTS2 WILD-TYPE 34 61 54
'ADAMTS2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.822 (Fisher's exact test), Q value = 1

Table S1373.  Gene #138: 'ADAMTS2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 78 102
ADAMTS2 MUTATED 10 7 12
ADAMTS2 WILD-TYPE 88 71 90
'ADAMTS2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.712 (Fisher's exact test), Q value = 1

Table S1374.  Gene #138: 'ADAMTS2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 134 71
ADAMTS2 MUTATED 6 16 7
ADAMTS2 WILD-TYPE 67 118 64
'ADAMTS2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.272 (Fisher's exact test), Q value = 1

Table S1375.  Gene #138: 'ADAMTS2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 117 85
ADAMTS2 MUTATED 10 11 6
ADAMTS2 WILD-TYPE 57 106 79
'ADAMTS2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.308 (Fisher's exact test), Q value = 1

Table S1376.  Gene #138: 'ADAMTS2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 160 82
ADAMTS2 MUTATED 2 20 5
ADAMTS2 WILD-TYPE 25 140 77
'ADAMTS2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.362 (Fisher's exact test), Q value = 1

Table S1377.  Gene #138: 'ADAMTS2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 82 110 77
ADAMTS2 MUTATED 11 11 5
ADAMTS2 WILD-TYPE 71 99 72
'ADAMTS2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.462 (Fisher's exact test), Q value = 1

Table S1378.  Gene #138: 'ADAMTS2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 79 45 120
ADAMTS2 MUTATED 2 5 4 16
ADAMTS2 WILD-TYPE 23 74 41 104
'KCNB2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.077 (Fisher's exact test), Q value = 1

Table S1379.  Gene #139: 'KCNB2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
KCNB2 MUTATED 16 5 11 27
KCNB2 WILD-TYPE 66 46 36 71
'KCNB2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0414 (Fisher's exact test), Q value = 1

Table S1380.  Gene #139: 'KCNB2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 95 106
KCNB2 MUTATED 9 25 25
KCNB2 WILD-TYPE 68 70 81

Figure S61.  Get High-res Image Gene #139: 'KCNB2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'KCNB2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.18 (Fisher's exact test), Q value = 1

Table S1381.  Gene #139: 'KCNB2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
KCNB2 MUTATED 13 10 10 8
KCNB2 WILD-TYPE 33 48 16 30
'KCNB2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.426 (Fisher's exact test), Q value = 1

Table S1382.  Gene #139: 'KCNB2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 38 70 60
KCNB2 MUTATED 12 17 12
KCNB2 WILD-TYPE 26 53 48
'KCNB2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.197 (Fisher's exact test), Q value = 1

Table S1383.  Gene #139: 'KCNB2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 78 102
KCNB2 MUTATED 15 19 25
KCNB2 WILD-TYPE 83 59 77
'KCNB2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.608 (Fisher's exact test), Q value = 1

Table S1384.  Gene #139: 'KCNB2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 134 71
KCNB2 MUTATED 14 32 13
KCNB2 WILD-TYPE 59 102 58
'KCNB2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.415 (Fisher's exact test), Q value = 1

Table S1385.  Gene #139: 'KCNB2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 117 85
KCNB2 MUTATED 18 22 17
KCNB2 WILD-TYPE 49 95 68
'KCNB2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.245 (Fisher's exact test), Q value = 1

Table S1386.  Gene #139: 'KCNB2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 160 82
KCNB2 MUTATED 9 33 15
KCNB2 WILD-TYPE 18 127 67
'KCNB2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.727 (Fisher's exact test), Q value = 1

Table S1387.  Gene #139: 'KCNB2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 82 110 77
KCNB2 MUTATED 19 24 14
KCNB2 WILD-TYPE 63 86 63
'KCNB2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.432 (Fisher's exact test), Q value = 1

Table S1388.  Gene #139: 'KCNB2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 79 45 120
KCNB2 MUTATED 7 14 7 29
KCNB2 WILD-TYPE 18 65 38 91
'IL7R MUTATION STATUS' versus 'CN_CNMF'

P value = 0.384 (Fisher's exact test), Q value = 1

Table S1389.  Gene #140: 'IL7R MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
IL7R MUTATED 9 8 6 7
IL7R WILD-TYPE 73 43 41 91
'IL7R MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00491 (Fisher's exact test), Q value = 1

Table S1390.  Gene #140: 'IL7R MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 95 106
IL7R MUTATED 3 18 9
IL7R WILD-TYPE 74 77 97

Figure S62.  Get High-res Image Gene #140: 'IL7R MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'IL7R MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.125 (Fisher's exact test), Q value = 1

Table S1391.  Gene #140: 'IL7R MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
IL7R MUTATED 5 7 0 7
IL7R WILD-TYPE 41 51 26 31
'IL7R MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0415 (Fisher's exact test), Q value = 1

Table S1392.  Gene #140: 'IL7R MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 38 70 60
IL7R MUTATED 2 5 12
IL7R WILD-TYPE 36 65 48

Figure S63.  Get High-res Image Gene #140: 'IL7R MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'IL7R MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.692 (Fisher's exact test), Q value = 1

Table S1393.  Gene #140: 'IL7R MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 78 102
IL7R MUTATED 12 9 9
IL7R WILD-TYPE 86 69 93
'IL7R MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.167 (Fisher's exact test), Q value = 1

Table S1394.  Gene #140: 'IL7R MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 134 71
IL7R MUTATED 7 19 4
IL7R WILD-TYPE 66 115 67
'IL7R MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00231 (Fisher's exact test), Q value = 1

Table S1395.  Gene #140: 'IL7R MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 117 85
IL7R MUTATED 14 10 3
IL7R WILD-TYPE 53 107 82

Figure S64.  Get High-res Image Gene #140: 'IL7R MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'IL7R MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.307 (Fisher's exact test), Q value = 1

Table S1396.  Gene #140: 'IL7R MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 160 82
IL7R MUTATED 5 15 7
IL7R WILD-TYPE 22 145 75
'IL7R MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00963 (Fisher's exact test), Q value = 1

Table S1397.  Gene #140: 'IL7R MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 82 110 77
IL7R MUTATED 15 9 3
IL7R WILD-TYPE 67 101 74

Figure S65.  Get High-res Image Gene #140: 'IL7R MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'IL7R MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.226 (Fisher's exact test), Q value = 1

Table S1398.  Gene #140: 'IL7R MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 79 45 120
IL7R MUTATED 5 7 2 13
IL7R WILD-TYPE 20 72 43 107
'RAPGEF5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.948 (Fisher's exact test), Q value = 1

Table S1399.  Gene #141: 'RAPGEF5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
RAPGEF5 MUTATED 5 2 2 6
RAPGEF5 WILD-TYPE 77 49 45 92
'RAPGEF5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.78 (Fisher's exact test), Q value = 1

Table S1400.  Gene #141: 'RAPGEF5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 95 106
RAPGEF5 MUTATED 5 4 6
RAPGEF5 WILD-TYPE 72 91 100
'RAPGEF5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.794 (Fisher's exact test), Q value = 1

Table S1401.  Gene #141: 'RAPGEF5 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
RAPGEF5 MUTATED 3 2 1 3
RAPGEF5 WILD-TYPE 43 56 25 35
'RAPGEF5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.755 (Fisher's exact test), Q value = 1

Table S1402.  Gene #141: 'RAPGEF5 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 38 70 60
RAPGEF5 MUTATED 3 3 3
RAPGEF5 WILD-TYPE 35 67 57
'RAPGEF5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.604 (Fisher's exact test), Q value = 1

Table S1403.  Gene #141: 'RAPGEF5 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 78 102
RAPGEF5 MUTATED 7 4 4
RAPGEF5 WILD-TYPE 91 74 98
'RAPGEF5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.743 (Fisher's exact test), Q value = 1

Table S1404.  Gene #141: 'RAPGEF5 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 134 71
RAPGEF5 MUTATED 5 6 4
RAPGEF5 WILD-TYPE 68 128 67
'RAPGEF5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.315 (Fisher's exact test), Q value = 1

Table S1405.  Gene #141: 'RAPGEF5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 117 85
RAPGEF5 MUTATED 6 5 3
RAPGEF5 WILD-TYPE 61 112 82
'RAPGEF5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.288 (Fisher's exact test), Q value = 1

Table S1406.  Gene #141: 'RAPGEF5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 160 82
RAPGEF5 MUTATED 3 7 4
RAPGEF5 WILD-TYPE 24 153 78
'RAPGEF5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.299 (Fisher's exact test), Q value = 1

Table S1407.  Gene #141: 'RAPGEF5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 82 110 77
RAPGEF5 MUTATED 7 4 3
RAPGEF5 WILD-TYPE 75 106 74
'RAPGEF5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.368 (Fisher's exact test), Q value = 1

Table S1408.  Gene #141: 'RAPGEF5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 79 45 120
RAPGEF5 MUTATED 3 4 1 6
RAPGEF5 WILD-TYPE 22 75 44 114
'OR4N4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.017 (Fisher's exact test), Q value = 1

Table S1409.  Gene #142: 'OR4N4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
OR4N4 MUTATED 2 2 0 11
OR4N4 WILD-TYPE 80 49 47 87

Figure S66.  Get High-res Image Gene #142: 'OR4N4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'OR4N4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.529 (Fisher's exact test), Q value = 1

Table S1410.  Gene #142: 'OR4N4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 95 106
OR4N4 MUTATED 3 4 8
OR4N4 WILD-TYPE 74 91 98
'OR4N4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.296 (Fisher's exact test), Q value = 1

Table S1411.  Gene #142: 'OR4N4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
OR4N4 MUTATED 4 3 1 0
OR4N4 WILD-TYPE 42 55 25 38
'OR4N4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.335 (Fisher's exact test), Q value = 1

Table S1412.  Gene #142: 'OR4N4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 38 70 60
OR4N4 MUTATED 3 4 1
OR4N4 WILD-TYPE 35 66 59
'OR4N4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0194 (Fisher's exact test), Q value = 1

Table S1413.  Gene #142: 'OR4N4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 78 102
OR4N4 MUTATED 1 8 6
OR4N4 WILD-TYPE 97 70 96

Figure S67.  Get High-res Image Gene #142: 'OR4N4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'OR4N4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.158 (Fisher's exact test), Q value = 1

Table S1414.  Gene #142: 'OR4N4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 134 71
OR4N4 MUTATED 1 10 4
OR4N4 WILD-TYPE 72 124 67
'OR4N4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.18 (Fisher's exact test), Q value = 1

Table S1415.  Gene #142: 'OR4N4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 117 85
OR4N4 MUTATED 3 3 7
OR4N4 WILD-TYPE 64 114 78
'OR4N4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.831 (Fisher's exact test), Q value = 1

Table S1416.  Gene #142: 'OR4N4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 160 82
OR4N4 MUTATED 1 7 5
OR4N4 WILD-TYPE 26 153 77
'OR4N4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1417.  Gene #142: 'OR4N4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 82 110 77
OR4N4 MUTATED 4 5 4
OR4N4 WILD-TYPE 78 105 73
'OR4N4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.685 (Fisher's exact test), Q value = 1

Table S1418.  Gene #142: 'OR4N4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 79 45 120
OR4N4 MUTATED 1 5 3 4
OR4N4 WILD-TYPE 24 74 42 116
'BMP5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.486 (Fisher's exact test), Q value = 1

Table S1419.  Gene #143: 'BMP5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
BMP5 MUTATED 9 7 3 7
BMP5 WILD-TYPE 73 44 44 91
'BMP5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00114 (Fisher's exact test), Q value = 1

Table S1420.  Gene #143: 'BMP5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 95 106
BMP5 MUTATED 6 17 3
BMP5 WILD-TYPE 71 78 103

Figure S68.  Get High-res Image Gene #143: 'BMP5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'BMP5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.134 (Fisher's exact test), Q value = 1

Table S1421.  Gene #143: 'BMP5 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
BMP5 MUTATED 2 7 0 1
BMP5 WILD-TYPE 44 51 26 37
'BMP5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0468 (Fisher's exact test), Q value = 1

Table S1422.  Gene #143: 'BMP5 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 38 70 60
BMP5 MUTATED 0 3 7
BMP5 WILD-TYPE 38 67 53

Figure S69.  Get High-res Image Gene #143: 'BMP5 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'BMP5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.526 (Fisher's exact test), Q value = 1

Table S1423.  Gene #143: 'BMP5 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 78 102
BMP5 MUTATED 11 8 7
BMP5 WILD-TYPE 87 70 95
'BMP5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.448 (Fisher's exact test), Q value = 1

Table S1424.  Gene #143: 'BMP5 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 134 71
BMP5 MUTATED 7 10 9
BMP5 WILD-TYPE 66 124 62
'BMP5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.954 (Fisher's exact test), Q value = 1

Table S1425.  Gene #143: 'BMP5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 117 85
BMP5 MUTATED 6 11 7
BMP5 WILD-TYPE 61 106 78
'BMP5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.519 (Fisher's exact test), Q value = 1

Table S1426.  Gene #143: 'BMP5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 160 82
BMP5 MUTATED 3 16 5
BMP5 WILD-TYPE 24 144 77
'BMP5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.738 (Fisher's exact test), Q value = 1

Table S1427.  Gene #143: 'BMP5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 82 110 77
BMP5 MUTATED 9 9 6
BMP5 WILD-TYPE 73 101 71
'BMP5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.713 (Fisher's exact test), Q value = 1

Table S1428.  Gene #143: 'BMP5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 79 45 120
BMP5 MUTATED 3 5 4 12
BMP5 WILD-TYPE 22 74 41 108
'HNF4G MUTATION STATUS' versus 'CN_CNMF'

P value = 0.349 (Fisher's exact test), Q value = 1

Table S1429.  Gene #144: 'HNF4G MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
HNF4G MUTATED 10 2 3 11
HNF4G WILD-TYPE 72 49 44 87
'HNF4G MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.23 (Fisher's exact test), Q value = 1

Table S1430.  Gene #144: 'HNF4G MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 95 106
HNF4G MUTATED 6 6 14
HNF4G WILD-TYPE 71 89 92
'HNF4G MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.468 (Fisher's exact test), Q value = 1

Table S1431.  Gene #144: 'HNF4G MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
HNF4G MUTATED 2 7 1 2
HNF4G WILD-TYPE 44 51 25 36
'HNF4G MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.74 (Fisher's exact test), Q value = 1

Table S1432.  Gene #144: 'HNF4G MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 38 70 60
HNF4G MUTATED 3 6 3
HNF4G WILD-TYPE 35 64 57
'HNF4G MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.26 (Fisher's exact test), Q value = 1

Table S1433.  Gene #144: 'HNF4G MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 78 102
HNF4G MUTATED 10 10 6
HNF4G WILD-TYPE 88 68 96
'HNF4G MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.911 (Fisher's exact test), Q value = 1

Table S1434.  Gene #144: 'HNF4G MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 134 71
HNF4G MUTATED 6 13 7
HNF4G WILD-TYPE 67 121 64
'HNF4G MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.338 (Fisher's exact test), Q value = 1

Table S1435.  Gene #144: 'HNF4G MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 117 85
HNF4G MUTATED 4 10 11
HNF4G WILD-TYPE 63 107 74
'HNF4G MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.703 (Fisher's exact test), Q value = 1

Table S1436.  Gene #144: 'HNF4G MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 160 82
HNF4G MUTATED 1 16 8
HNF4G WILD-TYPE 26 144 74
'HNF4G MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.455 (Fisher's exact test), Q value = 1

Table S1437.  Gene #144: 'HNF4G MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 82 110 77
HNF4G MUTATED 5 11 9
HNF4G WILD-TYPE 77 99 68
'HNF4G MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.818 (Fisher's exact test), Q value = 1

Table S1438.  Gene #144: 'HNF4G MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 79 45 120
HNF4G MUTATED 1 8 5 11
HNF4G WILD-TYPE 24 71 40 109
'C8B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00208 (Fisher's exact test), Q value = 1

Table S1439.  Gene #145: 'C8B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
C8B MUTATED 13 0 10 15
C8B WILD-TYPE 69 51 37 83

Figure S70.  Get High-res Image Gene #145: 'C8B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'C8B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1440.  Gene #145: 'C8B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 95 106
C8B MUTATED 10 13 15
C8B WILD-TYPE 67 82 91
'C8B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0539 (Fisher's exact test), Q value = 1

Table S1441.  Gene #145: 'C8B MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
C8B MUTATED 12 5 2 8
C8B WILD-TYPE 34 53 24 30
'C8B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.137 (Fisher's exact test), Q value = 1

Table S1442.  Gene #145: 'C8B MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 38 70 60
C8B MUTATED 10 8 9
C8B WILD-TYPE 28 62 51
'C8B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.743 (Fisher's exact test), Q value = 1

Table S1443.  Gene #145: 'C8B MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 78 102
C8B MUTATED 15 11 12
C8B WILD-TYPE 83 67 90
'C8B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.498 (Fisher's exact test), Q value = 1

Table S1444.  Gene #145: 'C8B MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 134 71
C8B MUTATED 12 19 7
C8B WILD-TYPE 61 115 64
'C8B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1445.  Gene #145: 'C8B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 117 85
C8B MUTATED 9 16 12
C8B WILD-TYPE 58 101 73
'C8B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.311 (Fisher's exact test), Q value = 1

Table S1446.  Gene #145: 'C8B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 160 82
C8B MUTATED 5 18 14
C8B WILD-TYPE 22 142 68
'C8B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.677 (Fisher's exact test), Q value = 1

Table S1447.  Gene #145: 'C8B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 82 110 77
C8B MUTATED 9 16 12
C8B WILD-TYPE 73 94 65
'C8B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.129 (Fisher's exact test), Q value = 1

Table S1448.  Gene #145: 'C8B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 79 45 120
C8B MUTATED 5 14 2 16
C8B WILD-TYPE 20 65 43 104
'CRNN MUTATION STATUS' versus 'CN_CNMF'

P value = 0.676 (Fisher's exact test), Q value = 1

Table S1449.  Gene #146: 'CRNN MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
CRNN MUTATED 8 2 3 7
CRNN WILD-TYPE 74 49 44 91
'CRNN MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0736 (Fisher's exact test), Q value = 1

Table S1450.  Gene #146: 'CRNN MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 95 106
CRNN MUTATED 2 11 7
CRNN WILD-TYPE 75 84 99
'CRNN MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00265 (Fisher's exact test), Q value = 1

Table S1451.  Gene #146: 'CRNN MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
CRNN MUTATED 1 1 4 7
CRNN WILD-TYPE 45 57 22 31

Figure S71.  Get High-res Image Gene #146: 'CRNN MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'CRNN MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.699 (Fisher's exact test), Q value = 1

Table S1452.  Gene #146: 'CRNN MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 38 70 60
CRNN MUTATED 2 7 4
CRNN WILD-TYPE 36 63 56
'CRNN MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.094 (Fisher's exact test), Q value = 1

Table S1453.  Gene #146: 'CRNN MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 78 102
CRNN MUTATED 3 6 11
CRNN WILD-TYPE 95 72 91
'CRNN MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.456 (Fisher's exact test), Q value = 1

Table S1454.  Gene #146: 'CRNN MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 134 71
CRNN MUTATED 3 12 5
CRNN WILD-TYPE 70 122 66
'CRNN MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.173 (Fisher's exact test), Q value = 1

Table S1455.  Gene #146: 'CRNN MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 117 85
CRNN MUTATED 2 12 5
CRNN WILD-TYPE 65 105 80
'CRNN MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.508 (Fisher's exact test), Q value = 1

Table S1456.  Gene #146: 'CRNN MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 160 82
CRNN MUTATED 1 14 4
CRNN WILD-TYPE 26 146 78
'CRNN MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.24 (Fisher's exact test), Q value = 1

Table S1457.  Gene #146: 'CRNN MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 82 110 77
CRNN MUTATED 3 11 5
CRNN WILD-TYPE 79 99 72
'CRNN MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.745 (Fisher's exact test), Q value = 1

Table S1458.  Gene #146: 'CRNN MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 79 45 120
CRNN MUTATED 1 4 3 11
CRNN WILD-TYPE 24 75 42 109
'UNC119B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0866 (Fisher's exact test), Q value = 1

Table S1459.  Gene #147: 'UNC119B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
UNC119B MUTATED 0 1 0 5
UNC119B WILD-TYPE 82 50 47 93
'UNC119B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.334 (Fisher's exact test), Q value = 1

Table S1460.  Gene #147: 'UNC119B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 95 106
UNC119B MUTATED 0 3 3
UNC119B WILD-TYPE 77 92 103
'UNC119B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.262 (Fisher's exact test), Q value = 1

Table S1461.  Gene #147: 'UNC119B MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
UNC119B MUTATED 1 4 0 0
UNC119B WILD-TYPE 45 54 26 38
'UNC119B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1462.  Gene #147: 'UNC119B MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 38 70 60
UNC119B MUTATED 1 2 2
UNC119B WILD-TYPE 37 68 58
'UNC119B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.59 (Fisher's exact test), Q value = 1

Table S1463.  Gene #147: 'UNC119B MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 78 102
UNC119B MUTATED 3 2 1
UNC119B WILD-TYPE 95 76 101
'UNC119B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.431 (Fisher's exact test), Q value = 1

Table S1464.  Gene #147: 'UNC119B MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 134 71
UNC119B MUTATED 2 4 0
UNC119B WILD-TYPE 71 130 71
'UNC119B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.856 (Fisher's exact test), Q value = 1

Table S1465.  Gene #147: 'UNC119B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 117 85
UNC119B MUTATED 1 3 1
UNC119B WILD-TYPE 66 114 84
'UNC119B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1466.  Gene #147: 'UNC119B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 160 82
UNC119B MUTATED 0 3 2
UNC119B WILD-TYPE 27 157 80
'UNC119B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.737 (Fisher's exact test), Q value = 1

Table S1467.  Gene #147: 'UNC119B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 82 110 77
UNC119B MUTATED 1 3 1
UNC119B WILD-TYPE 81 107 76
'UNC119B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.824 (Fisher's exact test), Q value = 1

Table S1468.  Gene #147: 'UNC119B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 79 45 120
UNC119B MUTATED 0 2 0 3
UNC119B WILD-TYPE 25 77 45 117
'OPN5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.79 (Fisher's exact test), Q value = 1

Table S1469.  Gene #148: 'OPN5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
OPN5 MUTATED 2 2 2 2
OPN5 WILD-TYPE 80 49 45 96
'OPN5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1470.  Gene #148: 'OPN5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 95 106
OPN5 MUTATED 2 3 3
OPN5 WILD-TYPE 75 92 103
'OPN5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.928 (Fisher's exact test), Q value = 1

Table S1471.  Gene #148: 'OPN5 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
OPN5 MUTATED 2 2 0 1
OPN5 WILD-TYPE 44 56 26 37
'OPN5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1472.  Gene #148: 'OPN5 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 38 70 60
OPN5 MUTATED 1 2 2
OPN5 WILD-TYPE 37 68 58
'OPN5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.228 (Fisher's exact test), Q value = 1

Table S1473.  Gene #148: 'OPN5 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 78 102
OPN5 MUTATED 3 4 1
OPN5 WILD-TYPE 95 74 101
'OPN5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.592 (Fisher's exact test), Q value = 1

Table S1474.  Gene #148: 'OPN5 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 134 71
OPN5 MUTATED 3 4 1
OPN5 WILD-TYPE 70 130 70
'OPN5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1475.  Gene #148: 'OPN5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 117 85
OPN5 MUTATED 2 3 2
OPN5 WILD-TYPE 65 114 83
'OPN5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.413 (Fisher's exact test), Q value = 1

Table S1476.  Gene #148: 'OPN5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 160 82
OPN5 MUTATED 1 3 3
OPN5 WILD-TYPE 26 157 79
'OPN5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1477.  Gene #148: 'OPN5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 82 110 77
OPN5 MUTATED 2 3 2
OPN5 WILD-TYPE 80 107 75
'OPN5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.886 (Fisher's exact test), Q value = 1

Table S1478.  Gene #148: 'OPN5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 79 45 120
OPN5 MUTATED 1 2 1 3
OPN5 WILD-TYPE 24 77 44 117
'ZSWIM2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.913 (Fisher's exact test), Q value = 1

Table S1479.  Gene #149: 'ZSWIM2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
ZSWIM2 MUTATED 8 6 6 10
ZSWIM2 WILD-TYPE 74 45 41 88
'ZSWIM2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.767 (Fisher's exact test), Q value = 1

Table S1480.  Gene #149: 'ZSWIM2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 95 106
ZSWIM2 MUTATED 7 12 11
ZSWIM2 WILD-TYPE 70 83 95
'ZSWIM2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.484 (Fisher's exact test), Q value = 1

Table S1481.  Gene #149: 'ZSWIM2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
ZSWIM2 MUTATED 5 5 2 7
ZSWIM2 WILD-TYPE 41 53 24 31
'ZSWIM2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.344 (Fisher's exact test), Q value = 1

Table S1482.  Gene #149: 'ZSWIM2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 38 70 60
ZSWIM2 MUTATED 5 10 4
ZSWIM2 WILD-TYPE 33 60 56
'ZSWIM2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.702 (Fisher's exact test), Q value = 1

Table S1483.  Gene #149: 'ZSWIM2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 78 102
ZSWIM2 MUTATED 9 8 13
ZSWIM2 WILD-TYPE 89 70 89
'ZSWIM2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.668 (Fisher's exact test), Q value = 1

Table S1484.  Gene #149: 'ZSWIM2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 134 71
ZSWIM2 MUTATED 6 15 9
ZSWIM2 WILD-TYPE 67 119 62
'ZSWIM2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.739 (Fisher's exact test), Q value = 1

Table S1485.  Gene #149: 'ZSWIM2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 117 85
ZSWIM2 MUTATED 7 15 8
ZSWIM2 WILD-TYPE 60 102 77
'ZSWIM2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.907 (Fisher's exact test), Q value = 1

Table S1486.  Gene #149: 'ZSWIM2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 160 82
ZSWIM2 MUTATED 2 19 9
ZSWIM2 WILD-TYPE 25 141 73
'ZSWIM2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.594 (Fisher's exact test), Q value = 1

Table S1487.  Gene #149: 'ZSWIM2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 82 110 77
ZSWIM2 MUTATED 8 15 7
ZSWIM2 WILD-TYPE 74 95 70
'ZSWIM2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.195 (Fisher's exact test), Q value = 1

Table S1488.  Gene #149: 'ZSWIM2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 79 45 120
ZSWIM2 MUTATED 1 9 2 18
ZSWIM2 WILD-TYPE 24 70 43 102
'MPP6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.822 (Fisher's exact test), Q value = 1

Table S1489.  Gene #150: 'MPP6 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
MPP6 MUTATED 5 3 1 6
MPP6 WILD-TYPE 77 48 46 92
'MPP6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.367 (Fisher's exact test), Q value = 1

Table S1490.  Gene #150: 'MPP6 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 95 106
MPP6 MUTATED 2 7 6
MPP6 WILD-TYPE 75 88 100
'MPP6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.466 (Fisher's exact test), Q value = 1

Table S1491.  Gene #150: 'MPP6 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
MPP6 MUTATED 5 2 1 2
MPP6 WILD-TYPE 41 56 25 36
'MPP6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.649 (Fisher's exact test), Q value = 1

Table S1492.  Gene #150: 'MPP6 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 38 70 60
MPP6 MUTATED 2 3 5
MPP6 WILD-TYPE 36 67 55
'MPP6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0352 (Fisher's exact test), Q value = 1

Table S1493.  Gene #150: 'MPP6 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 78 102
MPP6 MUTATED 3 9 3
MPP6 WILD-TYPE 95 69 99

Figure S72.  Get High-res Image Gene #150: 'MPP6 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'MPP6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.699 (Fisher's exact test), Q value = 1

Table S1494.  Gene #150: 'MPP6 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 134 71
MPP6 MUTATED 3 9 3
MPP6 WILD-TYPE 70 125 68
'MPP6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.294 (Fisher's exact test), Q value = 1

Table S1495.  Gene #150: 'MPP6 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 117 85
MPP6 MUTATED 6 4 5
MPP6 WILD-TYPE 61 113 80
'MPP6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.328 (Fisher's exact test), Q value = 1

Table S1496.  Gene #150: 'MPP6 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 160 82
MPP6 MUTATED 3 9 3
MPP6 WILD-TYPE 24 151 79
'MPP6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.841 (Fisher's exact test), Q value = 1

Table S1497.  Gene #150: 'MPP6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 82 110 77
MPP6 MUTATED 5 5 5
MPP6 WILD-TYPE 77 105 72
'MPP6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.465 (Fisher's exact test), Q value = 1

Table S1498.  Gene #150: 'MPP6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 79 45 120
MPP6 MUTATED 3 3 2 7
MPP6 WILD-TYPE 22 76 43 113
'DACH1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.289 (Fisher's exact test), Q value = 1

Table S1499.  Gene #151: 'DACH1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
DACH1 MUTATED 7 2 3 13
DACH1 WILD-TYPE 75 49 44 85
'DACH1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0428 (Fisher's exact test), Q value = 1

Table S1500.  Gene #151: 'DACH1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 95 106
DACH1 MUTATED 2 12 11
DACH1 WILD-TYPE 75 83 95

Figure S73.  Get High-res Image Gene #151: 'DACH1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'DACH1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.163 (Fisher's exact test), Q value = 1

Table S1501.  Gene #151: 'DACH1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
DACH1 MUTATED 7 3 2 1
DACH1 WILD-TYPE 39 55 24 37
'DACH1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1502.  Gene #151: 'DACH1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 38 70 60
DACH1 MUTATED 3 5 5
DACH1 WILD-TYPE 35 65 55
'DACH1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.344 (Fisher's exact test), Q value = 1

Table S1503.  Gene #151: 'DACH1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 78 102
DACH1 MUTATED 10 9 6
DACH1 WILD-TYPE 88 69 96
'DACH1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.482 (Fisher's exact test), Q value = 1

Table S1504.  Gene #151: 'DACH1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 134 71
DACH1 MUTATED 4 14 7
DACH1 WILD-TYPE 69 120 64
'DACH1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.474 (Fisher's exact test), Q value = 1

Table S1505.  Gene #151: 'DACH1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 117 85
DACH1 MUTATED 8 8 7
DACH1 WILD-TYPE 59 109 78
'DACH1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.181 (Fisher's exact test), Q value = 1

Table S1506.  Gene #151: 'DACH1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 160 82
DACH1 MUTATED 4 10 9
DACH1 WILD-TYPE 23 150 73
'DACH1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.373 (Fisher's exact test), Q value = 1

Table S1507.  Gene #151: 'DACH1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 82 110 77
DACH1 MUTATED 10 8 5
DACH1 WILD-TYPE 72 102 72
'DACH1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.245 (Fisher's exact test), Q value = 1

Table S1508.  Gene #151: 'DACH1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 79 45 120
DACH1 MUTATED 4 9 2 8
DACH1 WILD-TYPE 21 70 43 112
'COL1A1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0303 (Fisher's exact test), Q value = 1

Table S1509.  Gene #152: 'COL1A1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
COL1A1 MUTATED 9 6 2 21
COL1A1 WILD-TYPE 73 45 45 77

Figure S74.  Get High-res Image Gene #152: 'COL1A1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'COL1A1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0967 (Fisher's exact test), Q value = 1

Table S1510.  Gene #152: 'COL1A1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 95 106
COL1A1 MUTATED 6 12 20
COL1A1 WILD-TYPE 71 83 86
'COL1A1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.129 (Fisher's exact test), Q value = 1

Table S1511.  Gene #152: 'COL1A1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
COL1A1 MUTATED 11 7 1 5
COL1A1 WILD-TYPE 35 51 25 33
'COL1A1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.074 (Fisher's exact test), Q value = 1

Table S1512.  Gene #152: 'COL1A1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 38 70 60
COL1A1 MUTATED 10 8 6
COL1A1 WILD-TYPE 28 62 54
'COL1A1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.115 (Fisher's exact test), Q value = 1

Table S1513.  Gene #152: 'COL1A1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 78 102
COL1A1 MUTATED 8 14 16
COL1A1 WILD-TYPE 90 64 86
'COL1A1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.258 (Fisher's exact test), Q value = 1

Table S1514.  Gene #152: 'COL1A1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 134 71
COL1A1 MUTATED 6 20 12
COL1A1 WILD-TYPE 67 114 59
'COL1A1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.475 (Fisher's exact test), Q value = 1

Table S1515.  Gene #152: 'COL1A1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 117 85
COL1A1 MUTATED 6 18 12
COL1A1 WILD-TYPE 61 99 73
'COL1A1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.711 (Fisher's exact test), Q value = 1

Table S1516.  Gene #152: 'COL1A1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 160 82
COL1A1 MUTATED 3 24 9
COL1A1 WILD-TYPE 24 136 73
'COL1A1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.271 (Fisher's exact test), Q value = 1

Table S1517.  Gene #152: 'COL1A1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 82 110 77
COL1A1 MUTATED 7 18 11
COL1A1 WILD-TYPE 75 92 66
'COL1A1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.739 (Fisher's exact test), Q value = 1

Table S1518.  Gene #152: 'COL1A1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 79 45 120
COL1A1 MUTATED 2 9 6 19
COL1A1 WILD-TYPE 23 70 39 101
'PTPN22 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.461 (Fisher's exact test), Q value = 1

Table S1519.  Gene #153: 'PTPN22 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
PTPN22 MUTATED 4 6 4 10
PTPN22 WILD-TYPE 78 45 43 88
'PTPN22 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0633 (Fisher's exact test), Q value = 1

Table S1520.  Gene #153: 'PTPN22 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 95 106
PTPN22 MUTATED 2 11 11
PTPN22 WILD-TYPE 75 84 95
'PTPN22 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.438 (Fisher's exact test), Q value = 1

Table S1521.  Gene #153: 'PTPN22 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
PTPN22 MUTATED 3 5 0 4
PTPN22 WILD-TYPE 43 53 26 34
'PTPN22 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0181 (Fisher's exact test), Q value = 1

Table S1522.  Gene #153: 'PTPN22 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 38 70 60
PTPN22 MUTATED 1 2 9
PTPN22 WILD-TYPE 37 68 51

Figure S75.  Get High-res Image Gene #153: 'PTPN22 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'PTPN22 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.755 (Fisher's exact test), Q value = 1

Table S1523.  Gene #153: 'PTPN22 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 78 102
PTPN22 MUTATED 7 8 9
PTPN22 WILD-TYPE 91 70 93
'PTPN22 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.49 (Fisher's exact test), Q value = 1

Table S1524.  Gene #153: 'PTPN22 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 134 71
PTPN22 MUTATED 4 14 6
PTPN22 WILD-TYPE 69 120 65
'PTPN22 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.263 (Fisher's exact test), Q value = 1

Table S1525.  Gene #153: 'PTPN22 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 117 85
PTPN22 MUTATED 8 10 4
PTPN22 WILD-TYPE 59 107 81
'PTPN22 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.678 (Fisher's exact test), Q value = 1

Table S1526.  Gene #153: 'PTPN22 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 160 82
PTPN22 MUTATED 3 12 7
PTPN22 WILD-TYPE 24 148 75
'PTPN22 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.132 (Fisher's exact test), Q value = 1

Table S1527.  Gene #153: 'PTPN22 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 82 110 77
PTPN22 MUTATED 11 7 4
PTPN22 WILD-TYPE 71 103 73
'PTPN22 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.673 (Fisher's exact test), Q value = 1

Table S1528.  Gene #153: 'PTPN22 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 79 45 120
PTPN22 MUTATED 3 7 2 10
PTPN22 WILD-TYPE 22 72 43 110
'DCDC1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.629 (Fisher's exact test), Q value = 1

Table S1529.  Gene #154: 'DCDC1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
DCDC1 MUTATED 2 0 1 4
DCDC1 WILD-TYPE 80 51 46 94
'DCDC1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.137 (Fisher's exact test), Q value = 1

Table S1530.  Gene #154: 'DCDC1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 95 106
DCDC1 MUTATED 0 2 5
DCDC1 WILD-TYPE 77 93 101
'DCDC1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.284 (Fisher's exact test), Q value = 1

Table S1531.  Gene #154: 'DCDC1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
DCDC1 MUTATED 2 0 0 1
DCDC1 WILD-TYPE 44 58 26 37
'DCDC1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.608 (Fisher's exact test), Q value = 1

Table S1532.  Gene #154: 'DCDC1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 38 70 60
DCDC1 MUTATED 0 1 2
DCDC1 WILD-TYPE 38 69 58
'DCDC1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.299 (Fisher's exact test), Q value = 1

Table S1533.  Gene #154: 'DCDC1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 78 102
DCDC1 MUTATED 1 4 2
DCDC1 WILD-TYPE 97 74 100
'DCDC1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.618 (Fisher's exact test), Q value = 1

Table S1534.  Gene #154: 'DCDC1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 134 71
DCDC1 MUTATED 1 5 1
DCDC1 WILD-TYPE 72 129 70
'DCDC1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.385 (Fisher's exact test), Q value = 1

Table S1535.  Gene #154: 'DCDC1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 117 85
DCDC1 MUTATED 0 3 3
DCDC1 WILD-TYPE 67 114 82
'DCDC1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1536.  Gene #154: 'DCDC1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 160 82
DCDC1 MUTATED 0 4 2
DCDC1 WILD-TYPE 27 156 80
'DCDC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.512 (Fisher's exact test), Q value = 1

Table S1537.  Gene #154: 'DCDC1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 82 110 77
DCDC1 MUTATED 1 2 3
DCDC1 WILD-TYPE 81 108 74
'DCDC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1538.  Gene #154: 'DCDC1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 79 45 120
DCDC1 MUTATED 0 2 1 3
DCDC1 WILD-TYPE 25 77 44 117
'WDR65 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.832 (Fisher's exact test), Q value = 1

Table S1539.  Gene #155: 'WDR65 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
WDR65 MUTATED 6 3 5 7
WDR65 WILD-TYPE 76 48 42 91
'WDR65 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.705 (Fisher's exact test), Q value = 1

Table S1540.  Gene #155: 'WDR65 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 95 106
WDR65 MUTATED 5 9 7
WDR65 WILD-TYPE 72 86 99
'WDR65 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.283 (Fisher's exact test), Q value = 1

Table S1541.  Gene #155: 'WDR65 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
WDR65 MUTATED 3 5 0 5
WDR65 WILD-TYPE 43 53 26 33
'WDR65 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.266 (Fisher's exact test), Q value = 1

Table S1542.  Gene #155: 'WDR65 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 38 70 60
WDR65 MUTATED 1 5 7
WDR65 WILD-TYPE 37 65 53
'WDR65 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.473 (Fisher's exact test), Q value = 1

Table S1543.  Gene #155: 'WDR65 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 78 102
WDR65 MUTATED 10 5 6
WDR65 WILD-TYPE 88 73 96
'WDR65 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.191 (Fisher's exact test), Q value = 1

Table S1544.  Gene #155: 'WDR65 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 134 71
WDR65 MUTATED 9 9 3
WDR65 WILD-TYPE 64 125 68
'WDR65 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0807 (Fisher's exact test), Q value = 1

Table S1545.  Gene #155: 'WDR65 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 117 85
WDR65 MUTATED 9 8 3
WDR65 WILD-TYPE 58 109 82
'WDR65 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.829 (Fisher's exact test), Q value = 1

Table S1546.  Gene #155: 'WDR65 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 160 82
WDR65 MUTATED 2 11 7
WDR65 WILD-TYPE 25 149 75
'WDR65 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0674 (Fisher's exact test), Q value = 1

Table S1547.  Gene #155: 'WDR65 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 82 110 77
WDR65 MUTATED 10 8 2
WDR65 WILD-TYPE 72 102 75
'WDR65 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.835 (Fisher's exact test), Q value = 1

Table S1548.  Gene #155: 'WDR65 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 79 45 120
WDR65 MUTATED 2 7 2 9
WDR65 WILD-TYPE 23 72 43 111
'TFEC MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0249 (Fisher's exact test), Q value = 1

Table S1549.  Gene #156: 'TFEC MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
TFEC MUTATED 11 0 3 6
TFEC WILD-TYPE 71 51 44 92

Figure S76.  Get High-res Image Gene #156: 'TFEC MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'TFEC MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.182 (Fisher's exact test), Q value = 1

Table S1550.  Gene #156: 'TFEC MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 95 106
TFEC MUTATED 8 8 4
TFEC WILD-TYPE 69 87 102
'TFEC MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.489 (Fisher's exact test), Q value = 1

Table S1551.  Gene #156: 'TFEC MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
TFEC MUTATED 4 3 0 3
TFEC WILD-TYPE 42 55 26 35
'TFEC MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.279 (Fisher's exact test), Q value = 1

Table S1552.  Gene #156: 'TFEC MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 38 70 60
TFEC MUTATED 4 2 4
TFEC WILD-TYPE 34 68 56
'TFEC MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.731 (Fisher's exact test), Q value = 1

Table S1553.  Gene #156: 'TFEC MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 78 102
TFEC MUTATED 8 4 8
TFEC WILD-TYPE 90 74 94
'TFEC MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.384 (Fisher's exact test), Q value = 1

Table S1554.  Gene #156: 'TFEC MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 134 71
TFEC MUTATED 6 7 7
TFEC WILD-TYPE 67 127 64
'TFEC MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.623 (Fisher's exact test), Q value = 1

Table S1555.  Gene #156: 'TFEC MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 117 85
TFEC MUTATED 3 10 7
TFEC WILD-TYPE 64 107 78
'TFEC MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.447 (Fisher's exact test), Q value = 1

Table S1556.  Gene #156: 'TFEC MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 160 82
TFEC MUTATED 3 13 4
TFEC WILD-TYPE 24 147 78
'TFEC MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.94 (Fisher's exact test), Q value = 1

Table S1557.  Gene #156: 'TFEC MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 82 110 77
TFEC MUTATED 6 9 5
TFEC WILD-TYPE 76 101 72
'TFEC MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.337 (Fisher's exact test), Q value = 1

Table S1558.  Gene #156: 'TFEC MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 79 45 120
TFEC MUTATED 3 5 1 11
TFEC WILD-TYPE 22 74 44 109
'NOTCH4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.259 (Fisher's exact test), Q value = 1

Table S1559.  Gene #157: 'NOTCH4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
NOTCH4 MUTATED 19 7 5 20
NOTCH4 WILD-TYPE 63 44 42 78
'NOTCH4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.859 (Fisher's exact test), Q value = 1

Table S1560.  Gene #157: 'NOTCH4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 95 106
NOTCH4 MUTATED 14 16 21
NOTCH4 WILD-TYPE 63 79 85
'NOTCH4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.489 (Fisher's exact test), Q value = 1

Table S1561.  Gene #157: 'NOTCH4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
NOTCH4 MUTATED 7 16 5 9
NOTCH4 WILD-TYPE 39 42 21 29
'NOTCH4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0734 (Fisher's exact test), Q value = 1

Table S1562.  Gene #157: 'NOTCH4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 38 70 60
NOTCH4 MUTATED 4 15 18
NOTCH4 WILD-TYPE 34 55 42
'NOTCH4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.404 (Fisher's exact test), Q value = 1

Table S1563.  Gene #157: 'NOTCH4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 78 102
NOTCH4 MUTATED 15 18 18
NOTCH4 WILD-TYPE 83 60 84
'NOTCH4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.871 (Fisher's exact test), Q value = 1

Table S1564.  Gene #157: 'NOTCH4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 134 71
NOTCH4 MUTATED 12 26 13
NOTCH4 WILD-TYPE 61 108 58
'NOTCH4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0351 (Fisher's exact test), Q value = 1

Table S1565.  Gene #157: 'NOTCH4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 117 85
NOTCH4 MUTATED 19 21 10
NOTCH4 WILD-TYPE 48 96 75

Figure S77.  Get High-res Image Gene #157: 'NOTCH4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'NOTCH4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.734 (Fisher's exact test), Q value = 1

Table S1566.  Gene #157: 'NOTCH4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 160 82
NOTCH4 MUTATED 5 32 13
NOTCH4 WILD-TYPE 22 128 69
'NOTCH4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.149 (Fisher's exact test), Q value = 1

Table S1567.  Gene #157: 'NOTCH4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 82 110 77
NOTCH4 MUTATED 16 25 9
NOTCH4 WILD-TYPE 66 85 68
'NOTCH4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0102 (Fisher's exact test), Q value = 1

Table S1568.  Gene #157: 'NOTCH4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 79 45 120
NOTCH4 MUTATED 4 13 2 31
NOTCH4 WILD-TYPE 21 66 43 89

Figure S78.  Get High-res Image Gene #157: 'NOTCH4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'KL MUTATION STATUS' versus 'CN_CNMF'

P value = 0.172 (Fisher's exact test), Q value = 1

Table S1569.  Gene #158: 'KL MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
KL MUTATED 9 2 2 13
KL WILD-TYPE 73 49 45 85
'KL MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.23 (Fisher's exact test), Q value = 1

Table S1570.  Gene #158: 'KL MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 95 106
KL MUTATED 6 6 14
KL WILD-TYPE 71 89 92
'KL MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0803 (Fisher's exact test), Q value = 1

Table S1571.  Gene #158: 'KL MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
KL MUTATED 9 3 1 3
KL WILD-TYPE 37 55 25 35
'KL MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.329 (Fisher's exact test), Q value = 1

Table S1572.  Gene #158: 'KL MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 38 70 60
KL MUTATED 5 4 7
KL WILD-TYPE 33 66 53
'KL MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.601 (Fisher's exact test), Q value = 1

Table S1573.  Gene #158: 'KL MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 78 102
KL MUTATED 7 9 10
KL WILD-TYPE 91 69 92
'KL MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.723 (Fisher's exact test), Q value = 1

Table S1574.  Gene #158: 'KL MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 134 71
KL MUTATED 7 11 8
KL WILD-TYPE 66 123 63
'KL MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.337 (Fisher's exact test), Q value = 1

Table S1575.  Gene #158: 'KL MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 117 85
KL MUTATED 6 8 11
KL WILD-TYPE 61 109 74
'KL MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.288 (Fisher's exact test), Q value = 1

Table S1576.  Gene #158: 'KL MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 160 82
KL MUTATED 1 13 11
KL WILD-TYPE 26 147 71
'KL MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.44 (Fisher's exact test), Q value = 1

Table S1577.  Gene #158: 'KL MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 82 110 77
KL MUTATED 6 9 10
KL WILD-TYPE 76 101 67
'KL MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.143 (Fisher's exact test), Q value = 1

Table S1578.  Gene #158: 'KL MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 79 45 120
KL MUTATED 1 11 1 12
KL WILD-TYPE 24 68 44 108
'CAPSL MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0923 (Fisher's exact test), Q value = 1

Table S1579.  Gene #159: 'CAPSL MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
CAPSL MUTATED 5 2 0 10
CAPSL WILD-TYPE 77 49 47 88
'CAPSL MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.597 (Fisher's exact test), Q value = 1

Table S1580.  Gene #159: 'CAPSL MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 95 106
CAPSL MUTATED 3 6 8
CAPSL WILD-TYPE 74 89 98
'CAPSL MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.79 (Fisher's exact test), Q value = 1

Table S1581.  Gene #159: 'CAPSL MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
CAPSL MUTATED 3 4 2 1
CAPSL WILD-TYPE 43 54 24 37
'CAPSL MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.449 (Fisher's exact test), Q value = 1

Table S1582.  Gene #159: 'CAPSL MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 38 70 60
CAPSL MUTATED 2 6 2
CAPSL WILD-TYPE 36 64 58
'CAPSL MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.057 (Fisher's exact test), Q value = 1

Table S1583.  Gene #159: 'CAPSL MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 78 102
CAPSL MUTATED 2 8 7
CAPSL WILD-TYPE 96 70 95
'CAPSL MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0174 (Fisher's exact test), Q value = 1

Table S1584.  Gene #159: 'CAPSL MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 134 71
CAPSL MUTATED 1 14 2
CAPSL WILD-TYPE 72 120 69

Figure S79.  Get High-res Image Gene #159: 'CAPSL MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'CAPSL MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.719 (Fisher's exact test), Q value = 1

Table S1585.  Gene #159: 'CAPSL MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 117 85
CAPSL MUTATED 5 8 4
CAPSL WILD-TYPE 62 109 81
'CAPSL MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.841 (Fisher's exact test), Q value = 1

Table S1586.  Gene #159: 'CAPSL MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 160 82
CAPSL MUTATED 1 10 6
CAPSL WILD-TYPE 26 150 76
'CAPSL MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.855 (Fisher's exact test), Q value = 1

Table S1587.  Gene #159: 'CAPSL MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 82 110 77
CAPSL MUTATED 6 7 4
CAPSL WILD-TYPE 76 103 73
'CAPSL MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.673 (Fisher's exact test), Q value = 1

Table S1588.  Gene #159: 'CAPSL MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 79 45 120
CAPSL MUTATED 1 6 1 9
CAPSL WILD-TYPE 24 73 44 111
'ACMSD MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1589.  Gene #160: 'ACMSD MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
ACMSD MUTATED 4 2 2 5
ACMSD WILD-TYPE 78 49 45 93
'ACMSD MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.68 (Fisher's exact test), Q value = 1

Table S1590.  Gene #160: 'ACMSD MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 95 106
ACMSD MUTATED 5 4 4
ACMSD WILD-TYPE 72 91 102
'ACMSD MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.74 (Fisher's exact test), Q value = 1

Table S1591.  Gene #160: 'ACMSD MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
ACMSD MUTATED 3 3 0 2
ACMSD WILD-TYPE 43 55 26 36
'ACMSD MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.901 (Fisher's exact test), Q value = 1

Table S1592.  Gene #160: 'ACMSD MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 38 70 60
ACMSD MUTATED 1 4 3
ACMSD WILD-TYPE 37 66 57
'ACMSD MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.546 (Fisher's exact test), Q value = 1

Table S1593.  Gene #160: 'ACMSD MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 78 102
ACMSD MUTATED 6 2 5
ACMSD WILD-TYPE 92 76 97
'ACMSD MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.151 (Fisher's exact test), Q value = 1

Table S1594.  Gene #160: 'ACMSD MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 134 71
ACMSD MUTATED 5 3 5
ACMSD WILD-TYPE 68 131 66
'ACMSD MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.29 (Fisher's exact test), Q value = 1

Table S1595.  Gene #160: 'ACMSD MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 117 85
ACMSD MUTATED 1 6 6
ACMSD WILD-TYPE 66 111 79
'ACMSD MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.831 (Fisher's exact test), Q value = 1

Table S1596.  Gene #160: 'ACMSD MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 160 82
ACMSD MUTATED 1 7 5
ACMSD WILD-TYPE 26 153 77
'ACMSD MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.878 (Fisher's exact test), Q value = 1

Table S1597.  Gene #160: 'ACMSD MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 82 110 77
ACMSD MUTATED 3 6 4
ACMSD WILD-TYPE 79 104 73
'ACMSD MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.856 (Fisher's exact test), Q value = 1

Table S1598.  Gene #160: 'ACMSD MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 79 45 120
ACMSD MUTATED 1 5 1 6
ACMSD WILD-TYPE 24 74 44 114
'TIMD4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.26 (Fisher's exact test), Q value = 1

Table S1599.  Gene #161: 'TIMD4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
TIMD4 MUTATED 5 1 1 9
TIMD4 WILD-TYPE 77 50 46 89
'TIMD4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.391 (Fisher's exact test), Q value = 1

Table S1600.  Gene #161: 'TIMD4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 95 106
TIMD4 MUTATED 2 7 7
TIMD4 WILD-TYPE 75 88 99
'TIMD4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.86 (Fisher's exact test), Q value = 1

Table S1601.  Gene #161: 'TIMD4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
TIMD4 MUTATED 4 3 1 2
TIMD4 WILD-TYPE 42 55 25 36
'TIMD4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.542 (Fisher's exact test), Q value = 1

Table S1602.  Gene #161: 'TIMD4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 38 70 60
TIMD4 MUTATED 3 5 2
TIMD4 WILD-TYPE 35 65 58
'TIMD4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.415 (Fisher's exact test), Q value = 1

Table S1603.  Gene #161: 'TIMD4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 78 102
TIMD4 MUTATED 4 7 5
TIMD4 WILD-TYPE 94 71 97
'TIMD4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.632 (Fisher's exact test), Q value = 1

Table S1604.  Gene #161: 'TIMD4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 134 71
TIMD4 MUTATED 3 10 3
TIMD4 WILD-TYPE 70 124 68
'TIMD4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.712 (Fisher's exact test), Q value = 1

Table S1605.  Gene #161: 'TIMD4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 117 85
TIMD4 MUTATED 4 5 6
TIMD4 WILD-TYPE 63 112 79
'TIMD4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.202 (Fisher's exact test), Q value = 1

Table S1606.  Gene #161: 'TIMD4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 160 82
TIMD4 MUTATED 2 6 7
TIMD4 WILD-TYPE 25 154 75
'TIMD4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.454 (Fisher's exact test), Q value = 1

Table S1607.  Gene #161: 'TIMD4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 82 110 77
TIMD4 MUTATED 5 4 6
TIMD4 WILD-TYPE 77 106 71
'TIMD4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.574 (Fisher's exact test), Q value = 1

Table S1608.  Gene #161: 'TIMD4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 79 45 120
TIMD4 MUTATED 2 6 1 6
TIMD4 WILD-TYPE 23 73 44 114
'C12ORF36 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.699 (Fisher's exact test), Q value = 1

Table S1609.  Gene #162: 'C12ORF36 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
C12ORF36 MUTATED 2 3 2 3
C12ORF36 WILD-TYPE 80 48 45 95
'C12ORF36 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.61 (Fisher's exact test), Q value = 1

Table S1610.  Gene #162: 'C12ORF36 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 95 106
C12ORF36 MUTATED 2 5 3
C12ORF36 WILD-TYPE 75 90 103
'C12ORF36 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.618 (Fisher's exact test), Q value = 1

Table S1611.  Gene #162: 'C12ORF36 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
C12ORF36 MUTATED 3 1 1 1
C12ORF36 WILD-TYPE 43 57 25 37
'C12ORF36 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.231 (Fisher's exact test), Q value = 1

Table S1612.  Gene #162: 'C12ORF36 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 38 70 60
C12ORF36 MUTATED 0 2 4
C12ORF36 WILD-TYPE 38 68 56
'C12ORF36 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.662 (Fisher's exact test), Q value = 1

Table S1613.  Gene #162: 'C12ORF36 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 78 102
C12ORF36 MUTATED 5 2 3
C12ORF36 WILD-TYPE 93 76 99
'C12ORF36 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.699 (Fisher's exact test), Q value = 1

Table S1614.  Gene #162: 'C12ORF36 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 134 71
C12ORF36 MUTATED 4 4 2
C12ORF36 WILD-TYPE 69 130 69
'C12ORF36 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.465 (Fisher's exact test), Q value = 1

Table S1615.  Gene #162: 'C12ORF36 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 117 85
C12ORF36 MUTATED 4 3 3
C12ORF36 WILD-TYPE 63 114 82
'C12ORF36 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.282 (Fisher's exact test), Q value = 1

Table S1616.  Gene #162: 'C12ORF36 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 160 82
C12ORF36 MUTATED 1 4 5
C12ORF36 WILD-TYPE 26 156 77
'C12ORF36 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.255 (Fisher's exact test), Q value = 1

Table S1617.  Gene #162: 'C12ORF36 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 82 110 77
C12ORF36 MUTATED 5 2 3
C12ORF36 WILD-TYPE 77 108 74
'C12ORF36 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.7 (Fisher's exact test), Q value = 1

Table S1618.  Gene #162: 'C12ORF36 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 79 45 120
C12ORF36 MUTATED 1 4 2 3
C12ORF36 WILD-TYPE 24 75 43 117
'SDPR MUTATION STATUS' versus 'CN_CNMF'

P value = 0.645 (Fisher's exact test), Q value = 1

Table S1619.  Gene #163: 'SDPR MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
SDPR MUTATED 6 2 2 9
SDPR WILD-TYPE 76 49 45 89
'SDPR MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.413 (Fisher's exact test), Q value = 1

Table S1620.  Gene #163: 'SDPR MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 95 106
SDPR MUTATED 5 9 5
SDPR WILD-TYPE 72 86 101
'SDPR MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.975 (Fisher's exact test), Q value = 1

Table S1621.  Gene #163: 'SDPR MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
SDPR MUTATED 3 5 2 2
SDPR WILD-TYPE 43 53 24 36
'SDPR MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.64 (Fisher's exact test), Q value = 1

Table S1622.  Gene #163: 'SDPR MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 38 70 60
SDPR MUTATED 2 4 6
SDPR WILD-TYPE 36 66 54
'SDPR MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.29 (Fisher's exact test), Q value = 1

Table S1623.  Gene #163: 'SDPR MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 78 102
SDPR MUTATED 6 3 10
SDPR WILD-TYPE 92 75 92
'SDPR MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.834 (Fisher's exact test), Q value = 1

Table S1624.  Gene #163: 'SDPR MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 134 71
SDPR MUTATED 6 9 4
SDPR WILD-TYPE 67 125 67
'SDPR MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.802 (Fisher's exact test), Q value = 1

Table S1625.  Gene #163: 'SDPR MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 117 85
SDPR MUTATED 5 7 7
SDPR WILD-TYPE 62 110 78
'SDPR MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1626.  Gene #163: 'SDPR MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 160 82
SDPR MUTATED 2 11 6
SDPR WILD-TYPE 25 149 76
'SDPR MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.845 (Fisher's exact test), Q value = 1

Table S1627.  Gene #163: 'SDPR MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 82 110 77
SDPR MUTATED 5 9 5
SDPR WILD-TYPE 77 101 72
'SDPR MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.572 (Fisher's exact test), Q value = 1

Table S1628.  Gene #163: 'SDPR MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 79 45 120
SDPR MUTATED 2 6 1 10
SDPR WILD-TYPE 23 73 44 110
'GPC5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.647 (Fisher's exact test), Q value = 1

Table S1629.  Gene #164: 'GPC5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
GPC5 MUTATED 7 7 4 13
GPC5 WILD-TYPE 75 44 43 85
'GPC5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.473 (Fisher's exact test), Q value = 1

Table S1630.  Gene #164: 'GPC5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 95 106
GPC5 MUTATED 7 9 15
GPC5 WILD-TYPE 70 86 91
'GPC5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.73 (Fisher's exact test), Q value = 1

Table S1631.  Gene #164: 'GPC5 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
GPC5 MUTATED 5 5 2 6
GPC5 WILD-TYPE 41 53 24 32
'GPC5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.681 (Fisher's exact test), Q value = 1

Table S1632.  Gene #164: 'GPC5 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 38 70 60
GPC5 MUTATED 5 8 5
GPC5 WILD-TYPE 33 62 55
'GPC5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0469 (Fisher's exact test), Q value = 1

Table S1633.  Gene #164: 'GPC5 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 78 102
GPC5 MUTATED 5 12 14
GPC5 WILD-TYPE 93 66 88

Figure S80.  Get High-res Image Gene #164: 'GPC5 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'GPC5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.178 (Fisher's exact test), Q value = 1

Table S1634.  Gene #164: 'GPC5 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 134 71
GPC5 MUTATED 4 18 9
GPC5 WILD-TYPE 69 116 62
'GPC5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.653 (Fisher's exact test), Q value = 1

Table S1635.  Gene #164: 'GPC5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 117 85
GPC5 MUTATED 9 11 10
GPC5 WILD-TYPE 58 106 75
'GPC5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.916 (Fisher's exact test), Q value = 1

Table S1636.  Gene #164: 'GPC5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 160 82
GPC5 MUTATED 3 17 10
GPC5 WILD-TYPE 24 143 72
'GPC5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.811 (Fisher's exact test), Q value = 1

Table S1637.  Gene #164: 'GPC5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 82 110 77
GPC5 MUTATED 9 11 10
GPC5 WILD-TYPE 73 99 67
'GPC5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.912 (Fisher's exact test), Q value = 1

Table S1638.  Gene #164: 'GPC5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 79 45 120
GPC5 MUTATED 2 10 4 14
GPC5 WILD-TYPE 23 69 41 106
'CCDC28A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.248 (Fisher's exact test), Q value = 1

Table S1639.  Gene #165: 'CCDC28A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
CCDC28A MUTATED 2 0 2 6
CCDC28A WILD-TYPE 80 51 45 92
'CCDC28A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.512 (Fisher's exact test), Q value = 1

Table S1640.  Gene #165: 'CCDC28A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 95 106
CCDC28A MUTATED 1 4 5
CCDC28A WILD-TYPE 76 91 101
'CCDC28A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.866 (Fisher's exact test), Q value = 1

Table S1641.  Gene #165: 'CCDC28A MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
CCDC28A MUTATED 3 2 1 1
CCDC28A WILD-TYPE 43 56 25 37
'CCDC28A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.186 (Fisher's exact test), Q value = 1

Table S1642.  Gene #165: 'CCDC28A MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 38 70 60
CCDC28A MUTATED 3 1 3
CCDC28A WILD-TYPE 35 69 57
'CCDC28A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.307 (Fisher's exact test), Q value = 1

Table S1643.  Gene #165: 'CCDC28A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 78 102
CCDC28A MUTATED 3 5 2
CCDC28A WILD-TYPE 95 73 100
'CCDC28A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.594 (Fisher's exact test), Q value = 1

Table S1644.  Gene #165: 'CCDC28A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 134 71
CCDC28A MUTATED 3 6 1
CCDC28A WILD-TYPE 70 128 70
'CCDC28A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.845 (Fisher's exact test), Q value = 1

Table S1645.  Gene #165: 'CCDC28A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 117 85
CCDC28A MUTATED 2 4 4
CCDC28A WILD-TYPE 65 113 81
'CCDC28A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.626 (Fisher's exact test), Q value = 1

Table S1646.  Gene #165: 'CCDC28A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 160 82
CCDC28A MUTATED 0 6 4
CCDC28A WILD-TYPE 27 154 78
'CCDC28A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1647.  Gene #165: 'CCDC28A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 82 110 77
CCDC28A MUTATED 3 4 3
CCDC28A WILD-TYPE 79 106 74
'CCDC28A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.928 (Fisher's exact test), Q value = 1

Table S1648.  Gene #165: 'CCDC28A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 79 45 120
CCDC28A MUTATED 0 3 2 5
CCDC28A WILD-TYPE 25 76 43 115
'DDX3X MUTATION STATUS' versus 'CN_CNMF'

P value = 0.484 (Fisher's exact test), Q value = 1

Table S1649.  Gene #166: 'DDX3X MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
DDX3X MUTATED 5 2 2 10
DDX3X WILD-TYPE 77 49 45 88
'DDX3X MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.928 (Fisher's exact test), Q value = 1

Table S1650.  Gene #166: 'DDX3X MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 95 106
DDX3X MUTATED 6 6 7
DDX3X WILD-TYPE 71 89 99
'DDX3X MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.58 (Fisher's exact test), Q value = 1

Table S1651.  Gene #166: 'DDX3X MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
DDX3X MUTATED 5 4 1 5
DDX3X WILD-TYPE 41 54 25 33
'DDX3X MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.195 (Fisher's exact test), Q value = 1

Table S1652.  Gene #166: 'DDX3X MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 38 70 60
DDX3X MUTATED 6 6 3
DDX3X WILD-TYPE 32 64 57
'DDX3X MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.58 (Fisher's exact test), Q value = 1

Table S1653.  Gene #166: 'DDX3X MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 78 102
DDX3X MUTATED 5 7 7
DDX3X WILD-TYPE 93 71 95
'DDX3X MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.834 (Fisher's exact test), Q value = 1

Table S1654.  Gene #166: 'DDX3X MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 134 71
DDX3X MUTATED 6 9 4
DDX3X WILD-TYPE 67 125 67
'DDX3X MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.942 (Fisher's exact test), Q value = 1

Table S1655.  Gene #166: 'DDX3X MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 117 85
DDX3X MUTATED 4 9 6
DDX3X WILD-TYPE 63 108 79
'DDX3X MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.201 (Fisher's exact test), Q value = 1

Table S1656.  Gene #166: 'DDX3X MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 160 82
DDX3X MUTATED 4 11 4
DDX3X WILD-TYPE 23 149 78
'DDX3X MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.568 (Fisher's exact test), Q value = 1

Table S1657.  Gene #166: 'DDX3X MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 82 110 77
DDX3X MUTATED 4 8 7
DDX3X WILD-TYPE 78 102 70
'DDX3X MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.543 (Fisher's exact test), Q value = 1

Table S1658.  Gene #166: 'DDX3X MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 79 45 120
DDX3X MUTATED 2 3 4 10
DDX3X WILD-TYPE 23 76 41 110
'MC2R MUTATION STATUS' versus 'CN_CNMF'

P value = 0.87 (Fisher's exact test), Q value = 1

Table S1659.  Gene #167: 'MC2R MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
MC2R MUTATED 2 1 1 1
MC2R WILD-TYPE 80 50 46 97
'MC2R MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.531 (Fisher's exact test), Q value = 1

Table S1660.  Gene #167: 'MC2R MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 77 95 106
MC2R MUTATED 1 3 1
MC2R WILD-TYPE 76 92 105
'MC2R MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1661.  Gene #167: 'MC2R MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
MC2R MUTATED 1 2 1 1
MC2R WILD-TYPE 45 56 25 37
'MC2R MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.289 (Fisher's exact test), Q value = 1

Table S1662.  Gene #167: 'MC2R MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 38 70 60
MC2R MUTATED 0 4 1
MC2R WILD-TYPE 38 66 59
'MC2R MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1663.  Gene #167: 'MC2R MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 78 102
MC2R MUTATED 2 1 2
MC2R WILD-TYPE 96 77 100
'MC2R MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.313 (Fisher's exact test), Q value = 1

Table S1664.  Gene #167: 'MC2R MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 134 71
MC2R MUTATED 2 1 2
MC2R WILD-TYPE 71 133 69
'MC2R MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.321 (Fisher's exact test), Q value = 1

Table S1665.  Gene #167: 'MC2R MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 117 85
MC2R MUTATED 0 4 1
MC2R WILD-TYPE 67 113 84
'MC2R MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.803 (Fisher's exact test), Q value = 1

Table S1666.  Gene #167: 'MC2R MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 160 82
MC2R MUTATED 0 4 1
MC2R WILD-TYPE 27 156 81
'MC2R MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.189 (Fisher's exact test), Q value = 1

Table S1667.  Gene #167: 'MC2R MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 82 110 77
MC2R MUTATED 0 4 1
MC2R WILD-TYPE 82 106 76
'MC2R MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.748 (Fisher's exact test), Q value = 1

Table S1668.  Gene #167: 'MC2R MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 79 45 120
MC2R MUTATED 0 1 0 4
MC2R WILD-TYPE 25 78 45 116
Methods & Data
Input

  • Mutation data file = transformed.cor.cli.txt

  • Molecular subtypes file = SKCM-TM.transferedmergedcluster.txt

  • Number of patients = 278

  • Number of significantly mutated genes = 167

  • Number of Molecular subtypes = 10

  • Exclude genes that fewer than K tumors have mutations, K = 3

Fisher's exact test

For binary or multi-class clinical features (nominal or ordinal), two-tailed Fisher's exact tests (Fisher 1922) were used to estimate the P values using the 'fisher.test' function in R

Q value calculation

For multiple hypothesis correction, Q value is the False Discovery Rate (FDR) analogue of the P value (Benjamini and Hochberg 1995), defined as the minimum FDR at which the test may be called significant. We used the 'Benjamini and Hochberg' method of 'p.adjust' function in R to convert P values into Q values.

References
[1] Fisher, R.A., On the interpretation of chi-square from contingency tables, and the calculation of P, Journal of the Royal Statistical Society 85(1):87-94 (1922)
[2] Benjamini and Hochberg, Controlling the false discovery rate: a practical and powerful approach to multiple testing, Journal of the Royal Statistical Society Series B 59:289-300 (1995)
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