
R version 2.10.1 (2009-12-14)
Copyright (C) 2009 The R Foundation for Statistical Computing
ISBN 3-900051-07-0

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> source("/xchip/tcga/gdac_prod/applications/process_mgmt/firehose_task_registry/tcga-gdac/GDAC_Correlate_Genomic_Events/broadinstitute.org/cancer.genome.analysis/10441/13/Correlate_Genomic_Events.R")
> result <- main("/xchip/tcga/gdac_prod/applications/process_mgmt/firehose_task_registry/tcga-gdac/GDAC_Correlate_Genomic_Events/broadinstitute.org/cancer.genome.analysis/10441/13/", "-nF=/xchip/tcga/Tools/Nozzle/v1.current", "-tTRUE", "-iD=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/STAD-TP/8210322/transformed.cor.cli.txt", "-iC=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering/STAD-TP/8282769/STAD-TP.transferedmergedcluster.txt", "-fF=", "-fC=3", "-fH=5", "-fW=9", "-fP=OUT", "-cP=0.05", "-cQ=0.25", "-MF=ALL", "-oT=STAD-TP", "-nV=Nozzle.R1", "-OP=MUTSIG", "-iT=", "-iX=")
[1] "terrence_modification_tag"
[1] TRUE
[1] "nver"          "-nV=Nozzle.R1"
[1] "nfn"                                 "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "successfully load Nozzle.R1"
[1] "ofn"         "-oT=STAD-TP"
[1] "opt"        "-OP=MUTSIG"
[1] "tl"   "-iT="
[1] "dx"   "-iX="
[1] "opt"    "MUTSIG"
[1] "dx" ""  
[1] "cfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering/STAD-TP/8282769/STAD-TP.transferedmergedcluster.txt"
[1] "dfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/STAD-TP/8210322/transformed.cor.cli.txt"

nPatients in clinical file=373, in cluster file=220, common to both=220
[1]  20 220
[1] "PIK3CA MUTATION ANALYSIS"
[1] 3
  PIK3CA MUTATED PIK3CA WILD-TYPE 
              48              172 
  PIK3CA MUTATED PIK3CA WILD-TYPE 
              48              172 
[1] "PGM5 MUTATION ANALYSIS"
[1] 3
  PGM5 MUTATED PGM5 WILD-TYPE 
            22            198 
  PGM5 MUTATED PGM5 WILD-TYPE 
            22            198 
[1] "KRAS MUTATION ANALYSIS"
[1] 3
  KRAS MUTATED KRAS WILD-TYPE 
            25            195 
  KRAS MUTATED KRAS WILD-TYPE 
            25            195 
[1] "CBWD1 MUTATION ANALYSIS"
[1] 3
  CBWD1 MUTATED CBWD1 WILD-TYPE 
             28             192 
  CBWD1 MUTATED CBWD1 WILD-TYPE 
             28             192 
[1] "TP53 MUTATION ANALYSIS"
[1] 3
  TP53 MUTATED TP53 WILD-TYPE 
            99            121 
  TP53 MUTATED TP53 WILD-TYPE 
            99            121 
[1] "ARID1A MUTATION ANALYSIS"
[1] 3
  ARID1A MUTATED ARID1A WILD-TYPE 
              41              179 
  ARID1A MUTATED ARID1A WILD-TYPE 
              41              179 
[1] "SMAD4 MUTATION ANALYSIS"
[1] 3
  SMAD4 MUTATED SMAD4 WILD-TYPE 
             19             201 
  SMAD4 MUTATED SMAD4 WILD-TYPE 
             19             201 
[1] "RHOA MUTATION ANALYSIS"
[1] 3
  RHOA MUTATED RHOA WILD-TYPE 
            13            207 
  RHOA MUTATED RHOA WILD-TYPE 
            13            207 
[1] "IRF2 MUTATION ANALYSIS"
[1] 3
  IRF2 MUTATED IRF2 WILD-TYPE 
            14            206 
  IRF2 MUTATED IRF2 WILD-TYPE 
            14            206 
[1] "CDH1 MUTATION ANALYSIS"
[1] 3
  CDH1 MUTATED CDH1 WILD-TYPE 
            18            202 
  CDH1 MUTATED CDH1 WILD-TYPE 
            18            202 
[1] "PTEN MUTATION ANALYSIS"
[1] 3
  PTEN MUTATED PTEN WILD-TYPE 
            14            206 
  PTEN MUTATED PTEN WILD-TYPE 
            14            206 
[1] "FBXW7 MUTATION ANALYSIS"
[1] 3
  FBXW7 MUTATED FBXW7 WILD-TYPE 
             19             201 
  FBXW7 MUTATED FBXW7 WILD-TYPE 
             19             201 
[1] "B2M MUTATION ANALYSIS"
[1] 3
  B2M MUTATED B2M WILD-TYPE 
            8           212 
  B2M MUTATED B2M WILD-TYPE 
            8           212 
[1] "FAM46D MUTATION ANALYSIS"
[1] 3
  FAM46D MUTATED FAM46D WILD-TYPE 
               6              214 
  FAM46D MUTATED FAM46D WILD-TYPE 
               6              214 
[1] "RNF43 MUTATION ANALYSIS"
[1] 3
  RNF43 MUTATED RNF43 WILD-TYPE 
              9             211 
  RNF43 MUTATED RNF43 WILD-TYPE 
              9             211 
[1] "APC MUTATION ANALYSIS"
[1] 3
  APC MUTATED APC WILD-TYPE 
           33           187 
  APC MUTATED APC WILD-TYPE 
           33           187 
[1] "WSB2 MUTATION ANALYSIS"
[1] 3
  WSB2 MUTATED WSB2 WILD-TYPE 
             7            213 
  WSB2 MUTATED WSB2 WILD-TYPE 
             7            213 
[1] "MAP2K7 MUTATION ANALYSIS"
[1] 3
  MAP2K7 MUTATED MAP2K7 WILD-TYPE 
              14              206 
  MAP2K7 MUTATED MAP2K7 WILD-TYPE 
              14              206 
[1] "TRPS1 MUTATION ANALYSIS"
[1] 3
  TRPS1 MUTATED TRPS1 WILD-TYPE 
             30             190 
  TRPS1 MUTATED TRPS1 WILD-TYPE 
             30             190 
[1] "C13ORF33 MUTATION ANALYSIS"
[1] 3
  C13ORF33 MUTATED C13ORF33 WILD-TYPE 
                 6                214 
  C13ORF33 MUTATED C13ORF33 WILD-TYPE 
                 6                214 
[1] "terrence_modification_tag"
[1] TRUE
[1] "data2feature, selection="
 [1] "CN_CNMF"                     "METHLYATION_CNMF"           
 [3] "RPPA_CNMF"                   "RPPA_CHIERARCHICAL"         
 [5] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
 [7] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
 [9] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"

Input Data has 10 rows and 220 columns.

Variable 1:'CN_CNMF':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 2:'METHLYATION_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 3:'RPPA_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 4:'RPPA_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 5:'MRNASEQ_CNMF':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 6:'MRNASEQ_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 7:'MIRSEQ_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'MIRSEQ_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 9:'MIRSEQ_MATURE_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 10:'MIRSEQ_MATURE_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
[1] "rownames(nsurv.mat)"
 [1] "CN_CNMF"                     "METHLYATION_CNMF"           
 [3] "RPPA_CNMF"                   "RPPA_CHIERARCHICAL"         
 [5] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
 [7] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
 [9] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"
[1] "TUMOR.?STAGE"
[1] "TUMOR.?GRADE"
[1] "PATHOLOGY.T"
[1] "PATHOLOGY.N"
Output Data has 220 columns, 0 survival variables, and 10 non-survival variables.
CN_CNMF, nv=5, binary=FALSE, numeric=FALSE
METHLYATION_CNMF, nv=3, binary=FALSE, numeric=FALSE
RPPA_CNMF, nv=3, binary=FALSE, numeric=FALSE
RPPA_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE
MRNASEQ_CNMF, nv=5, binary=FALSE, numeric=FALSE
MRNASEQ_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_CNMF, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CNMF, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE

Clustering(1) Variable = PIK3CA MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PIK3CA MUTATED       36      3      4      2      3
  PIK3CA WILD-TYPE     68     17     33      4     49
D1V1, multiclass
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PIK3CA MUTATED       26      3     13
  PIK3CA WILD-TYPE     40     43     50
D1V2, multiclass
        clus
vv       PIK3CA MUTATED PIK3CA WILD-TYPE
  CLUS_1             26               40
  CLUS_2              3               43
  CLUS_3             13               50
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PIK3CA MUTATED       20      8     17
  PIK3CA WILD-TYPE     42     60     50
D1V3, multiclass
        clus
vv       PIK3CA MUTATED PIK3CA WILD-TYPE
  CLUS_1             20               42
  CLUS_2              8               60
  CLUS_3             17               50
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PIK3CA MUTATED       22     15      8
  PIK3CA WILD-TYPE     59     21     72
D1V4, multiclass
        clus
vv       PIK3CA MUTATED PIK3CA WILD-TYPE
  CLUS_1             22               59
  CLUS_2             15               21
  CLUS_3              8               72
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PIK3CA MUTATED       20      8      3      9      4
  PIK3CA WILD-TYPE     28     35     27     21     40
D1V5, multiclass
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PIK3CA MUTATED        3     29     12
  PIK3CA WILD-TYPE     50     48     53
D1V6, multiclass
        clus
vv       PIK3CA MUTATED PIK3CA WILD-TYPE
  CLUS_1              3               50
  CLUS_2             29               48
  CLUS_3             12               53
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PIK3CA MUTATED       27     14      7
  PIK3CA WILD-TYPE     57     55     60
D1V7, multiclass
        clus
vv       PIK3CA MUTATED PIK3CA WILD-TYPE
  CLUS_1             27               57
  CLUS_2             14               55
  CLUS_3              7               60
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PIK3CA MUTATED       16      5     27
  PIK3CA WILD-TYPE     56     49     67
D1V8, multiclass
        clus
vv       PIK3CA MUTATED PIK3CA WILD-TYPE
  CLUS_1             16               56
  CLUS_2              5               49
  CLUS_3             27               67
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PIK3CA MUTATED       21     13      8
  PIK3CA WILD-TYPE     35     56     43
D1V9, multiclass
        clus
vv       PIK3CA MUTATED PIK3CA WILD-TYPE
  CLUS_1             21               35
  CLUS_2             13               56
  CLUS_3              8               43
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PIK3CA MUTATED        3     28     11
  PIK3CA WILD-TYPE     39     56     39
D1V10, multiclass
        clus
vv       PIK3CA MUTATED PIK3CA WILD-TYPE
  CLUS_1              3               39
  CLUS_2             28               56
  CLUS_3             11               39

Clustering(2) Variable = PGM5 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PGM5 MUTATED       18      2      1      1      0
  PGM5 WILD-TYPE     86     18     36      5     52
D2V1, multiclass
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PGM5 MUTATED       15      0      1
  PGM5 WILD-TYPE     51     46     62
D2V2, multiclass
        clus
vv       PGM5 MUTATED PGM5 WILD-TYPE
  CLUS_1           15             51
  CLUS_2            0             46
  CLUS_3            1             62
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PGM5 MUTATED       10      4      6
  PGM5 WILD-TYPE     52     64     61
D2V3, multiclass
        clus
vv       PGM5 MUTATED PGM5 WILD-TYPE
  CLUS_1           10             52
  CLUS_2            4             64
  CLUS_3            6             61
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PGM5 MUTATED       11      6      3
  PGM5 WILD-TYPE     70     30     77
D2V4, multiclass
        clus
vv       PGM5 MUTATED PGM5 WILD-TYPE
  CLUS_1           11             70
  CLUS_2            6             30
  CLUS_3            3             77
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PGM5 MUTATED       11      2      5      1      0
  PGM5 WILD-TYPE     37     41     25     29     44
D2V5, multiclass
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PGM5 MUTATED        0     13      6
  PGM5 WILD-TYPE     53     64     59
D2V6, multiclass
        clus
vv       PGM5 MUTATED PGM5 WILD-TYPE
  CLUS_1            0             53
  CLUS_2           13             64
  CLUS_3            6             59
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PGM5 MUTATED       12      5      5
  PGM5 WILD-TYPE     72     64     62
D2V7, multiclass
        clus
vv       PGM5 MUTATED PGM5 WILD-TYPE
  CLUS_1           12             72
  CLUS_2            5             64
  CLUS_3            5             62
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PGM5 MUTATED        7      1     14
  PGM5 WILD-TYPE     65     53     80
D2V8, multiclass
        clus
vv       PGM5 MUTATED PGM5 WILD-TYPE
  CLUS_1            7             65
  CLUS_2            1             53
  CLUS_3           14             80
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PGM5 MUTATED        4     10      2
  PGM5 WILD-TYPE     52     59     49
D2V9, multiclass
        clus
vv       PGM5 MUTATED PGM5 WILD-TYPE
  CLUS_1            4             52
  CLUS_2           10             59
  CLUS_3            2             49
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PGM5 MUTATED        0     12      4
  PGM5 WILD-TYPE     42     72     46
D2V10, multiclass
        clus
vv       PGM5 MUTATED PGM5 WILD-TYPE
  CLUS_1            0             42
  CLUS_2           12             72
  CLUS_3            4             46

Clustering(3) Variable = KRAS MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KRAS MUTATED       18      1      1      3      2
  KRAS WILD-TYPE     86     19     36      3     50
D3V1, multiclass
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  KRAS MUTATED        9      3      6
  KRAS WILD-TYPE     57     43     57
D3V2, multiclass
        clus
vv       KRAS MUTATED KRAS WILD-TYPE
  CLUS_1            9             57
  CLUS_2            3             43
  CLUS_3            6             57
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  KRAS MUTATED       10      7      7
  KRAS WILD-TYPE     52     61     60
D3V3, multiclass
        clus
vv       KRAS MUTATED KRAS WILD-TYPE
  CLUS_1           10             52
  CLUS_2            7             61
  CLUS_3            7             60
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  KRAS MUTATED       11      4      9
  KRAS WILD-TYPE     70     32     71
D3V4, multiclass
        clus
vv       KRAS MUTATED KRAS WILD-TYPE
  CLUS_1           11             70
  CLUS_2            4             32
  CLUS_3            9             71
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KRAS MUTATED        9      4      2      4      2
  KRAS WILD-TYPE     39     39     28     26     42
D3V5, multiclass
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  KRAS MUTATED        1     12      8
  KRAS WILD-TYPE     52     65     57
D3V6, multiclass
        clus
vv       KRAS MUTATED KRAS WILD-TYPE
  CLUS_1            1             52
  CLUS_2           12             65
  CLUS_3            8             57
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  KRAS MUTATED       13      4      8
  KRAS WILD-TYPE     71     65     59
D3V7, multiclass
        clus
vv       KRAS MUTATED KRAS WILD-TYPE
  CLUS_1           13             71
  CLUS_2            4             65
  CLUS_3            8             59
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  KRAS MUTATED        8      4     13
  KRAS WILD-TYPE     64     50     81
D3V8, multiclass
        clus
vv       KRAS MUTATED KRAS WILD-TYPE
  CLUS_1            8             64
  CLUS_2            4             50
  CLUS_3           13             81
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  KRAS MUTATED        5     11      2
  KRAS WILD-TYPE     51     58     49
D3V9, multiclass
        clus
vv       KRAS MUTATED KRAS WILD-TYPE
  CLUS_1            5             51
  CLUS_2           11             58
  CLUS_3            2             49
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  KRAS MUTATED        5      8      5
  KRAS WILD-TYPE     37     76     45
D3V10, multiclass
        clus
vv       KRAS MUTATED KRAS WILD-TYPE
  CLUS_1            5             37
  CLUS_2            8             76
  CLUS_3            5             45

Clustering(4) Variable = CBWD1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CBWD1 MUTATED       26      0      2      0      0
  CBWD1 WILD-TYPE     78     20     35      6     52
D4V1, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CBWD1 MUTATED       20      0      2
  CBWD1 WILD-TYPE     46     46     61
D4V2, multiclass
        clus
vv       CBWD1 MUTATED CBWD1 WILD-TYPE
  CLUS_1            20              46
  CLUS_2             0              46
  CLUS_3             2              61
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CBWD1 MUTATED       18      2      7
  CBWD1 WILD-TYPE     44     66     60
D4V3, multiclass
        clus
vv       CBWD1 MUTATED CBWD1 WILD-TYPE
  CLUS_1            18              44
  CLUS_2             2              66
  CLUS_3             7              60
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CBWD1 MUTATED       14      9      4
  CBWD1 WILD-TYPE     67     27     76
D4V4, multiclass
        clus
vv       CBWD1 MUTATED CBWD1 WILD-TYPE
  CLUS_1            14              67
  CLUS_2             9              27
  CLUS_3             4              76
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CBWD1 MUTATED       15      4      3      2      0
  CBWD1 WILD-TYPE     33     39     27     28     44
D4V5, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CBWD1 MUTATED        2     17      5
  CBWD1 WILD-TYPE     51     60     60
D4V6, multiclass
        clus
vv       CBWD1 MUTATED CBWD1 WILD-TYPE
  CLUS_1             2              51
  CLUS_2            17              60
  CLUS_3             5              60
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CBWD1 MUTATED       17      7      4
  CBWD1 WILD-TYPE     67     62     63
D4V7, multiclass
        clus
vv       CBWD1 MUTATED CBWD1 WILD-TYPE
  CLUS_1            17              67
  CLUS_2             7              62
  CLUS_3             4              63
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CBWD1 MUTATED       10      1     17
  CBWD1 WILD-TYPE     62     53     77
D4V8, multiclass
        clus
vv       CBWD1 MUTATED CBWD1 WILD-TYPE
  CLUS_1            10              62
  CLUS_2             1              53
  CLUS_3            17              77
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CBWD1 MUTATED        8     11      3
  CBWD1 WILD-TYPE     48     58     48
D4V9, multiclass
        clus
vv       CBWD1 MUTATED CBWD1 WILD-TYPE
  CLUS_1             8              48
  CLUS_2            11              58
  CLUS_3             3              48
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CBWD1 MUTATED        0     19      3
  CBWD1 WILD-TYPE     42     65     47
D4V10, multiclass
        clus
vv       CBWD1 MUTATED CBWD1 WILD-TYPE
  CLUS_1             0              42
  CLUS_2            19              65
  CLUS_3             3              47

Clustering(5) Variable = TP53 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TP53 MUTATED       22     16     20      3     37
  TP53 WILD-TYPE     82      4     17      3     15
D5V1, multiclass
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TP53 MUTATED       28     33     21
  TP53 WILD-TYPE     38     13     42
D5V2, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1           28             38
  CLUS_2           33             13
  CLUS_3           21             42
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TP53 MUTATED       33     25     30
  TP53 WILD-TYPE     29     43     37
D5V3, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1           33             29
  CLUS_2           25             43
  CLUS_3           30             37
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TP53 MUTATED       37     17     34
  TP53 WILD-TYPE     44     19     46
D5V4, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1           37             44
  CLUS_2           17             19
  CLUS_3           34             46
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TP53 MUTATED       14     12     12     17     30
  TP53 WILD-TYPE     34     31     18     13     14
D5V5, multiclass
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TP53 MUTATED       35     30     20
  TP53 WILD-TYPE     18     47     45
D5V6, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1           35             18
  CLUS_2           30             47
  CLUS_3           20             45
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TP53 MUTATED       34     26     39
  TP53 WILD-TYPE     50     43     28
D5V7, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1           34             50
  CLUS_2           26             43
  CLUS_3           39             28
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TP53 MUTATED       23     39     37
  TP53 WILD-TYPE     49     15     57
D5V8, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1           23             49
  CLUS_2           39             15
  CLUS_3           37             57
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TP53 MUTATED       25     38     20
  TP53 WILD-TYPE     31     31     31
D5V9, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1           25             31
  CLUS_2           38             31
  CLUS_3           20             31
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TP53 MUTATED       31     39     13
  TP53 WILD-TYPE     11     45     37
D5V10, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1           31             11
  CLUS_2           39             45
  CLUS_3           13             37

Clustering(6) Variable = ARID1A MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ARID1A MUTATED       33      2      6      0      0
  ARID1A WILD-TYPE     71     18     31      6     52
D6V1, multiclass
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ARID1A MUTATED       16      4     10
  ARID1A WILD-TYPE     50     42     53
D6V2, multiclass
        clus
vv       ARID1A MUTATED ARID1A WILD-TYPE
  CLUS_1             16               50
  CLUS_2              4               42
  CLUS_3             10               53
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ARID1A MUTATED       19      7     13
  ARID1A WILD-TYPE     43     61     54
D6V3, multiclass
        clus
vv       ARID1A MUTATED ARID1A WILD-TYPE
  CLUS_1             19               43
  CLUS_2              7               61
  CLUS_3             13               54
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ARID1A MUTATED       22      7     10
  ARID1A WILD-TYPE     59     29     70
D6V4, multiclass
        clus
vv       ARID1A MUTATED ARID1A WILD-TYPE
  CLUS_1             22               59
  CLUS_2              7               29
  CLUS_3             10               70
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ARID1A MUTATED       19      9      4      5      2
  ARID1A WILD-TYPE     29     34     26     25     42
D6V5, multiclass
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ARID1A MUTATED        4     22     13
  ARID1A WILD-TYPE     49     55     52
D6V6, multiclass
        clus
vv       ARID1A MUTATED ARID1A WILD-TYPE
  CLUS_1              4               49
  CLUS_2             22               55
  CLUS_3             13               52
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ARID1A MUTATED       22     10      9
  ARID1A WILD-TYPE     62     59     58
D6V7, multiclass
        clus
vv       ARID1A MUTATED ARID1A WILD-TYPE
  CLUS_1             22               62
  CLUS_2             10               59
  CLUS_3              9               58
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ARID1A MUTATED       11      4     26
  ARID1A WILD-TYPE     61     50     68
D6V8, multiclass
        clus
vv       ARID1A MUTATED ARID1A WILD-TYPE
  CLUS_1             11               61
  CLUS_2              4               50
  CLUS_3             26               68
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ARID1A MUTATED        9     13      8
  ARID1A WILD-TYPE     47     56     43
D6V9, multiclass
        clus
vv       ARID1A MUTATED ARID1A WILD-TYPE
  CLUS_1              9               47
  CLUS_2             13               56
  CLUS_3              8               43
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ARID1A MUTATED        4     19      7
  ARID1A WILD-TYPE     38     65     43
D6V10, multiclass
        clus
vv       ARID1A MUTATED ARID1A WILD-TYPE
  CLUS_1              4               38
  CLUS_2             19               65
  CLUS_3              7               43

Clustering(7) Variable = SMAD4 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SMAD4 MUTATED        8      1      5      0      5
  SMAD4 WILD-TYPE     96     19     32      6     47
D7V1, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SMAD4 MUTATED        6      4      5
  SMAD4 WILD-TYPE     60     42     58
D7V2, multiclass
        clus
vv       SMAD4 MUTATED SMAD4 WILD-TYPE
  CLUS_1             6              60
  CLUS_2             4              42
  CLUS_3             5              58
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SMAD4 MUTATED        9      5      2
  SMAD4 WILD-TYPE     53     63     65
D7V3, multiclass
        clus
vv       SMAD4 MUTATED SMAD4 WILD-TYPE
  CLUS_1             9              53
  CLUS_2             5              63
  CLUS_3             2              65
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SMAD4 MUTATED        6      4      6
  SMAD4 WILD-TYPE     75     32     74
D7V4, multiclass
        clus
vv       SMAD4 MUTATED SMAD4 WILD-TYPE
  CLUS_1             6              75
  CLUS_2             4              32
  CLUS_3             6              74
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SMAD4 MUTATED        5      1      7      4      0
  SMAD4 WILD-TYPE     43     42     23     26     44
D7V5, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SMAD4 MUTATED        2     10      5
  SMAD4 WILD-TYPE     51     67     60
D7V6, multiclass
        clus
vv       SMAD4 MUTATED SMAD4 WILD-TYPE
  CLUS_1             2              51
  CLUS_2            10              67
  CLUS_3             5              60
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SMAD4 MUTATED       11      4      4
  SMAD4 WILD-TYPE     73     65     63
D7V7, multiclass
        clus
vv       SMAD4 MUTATED SMAD4 WILD-TYPE
  CLUS_1            11              73
  CLUS_2             4              65
  CLUS_3             4              63
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SMAD4 MUTATED        5      2     12
  SMAD4 WILD-TYPE     67     52     82
D7V8, multiclass
        clus
vv       SMAD4 MUTATED SMAD4 WILD-TYPE
  CLUS_1             5              67
  CLUS_2             2              52
  CLUS_3            12              82
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SMAD4 MUTATED        4      8      3
  SMAD4 WILD-TYPE     52     61     48
D7V9, multiclass
        clus
vv       SMAD4 MUTATED SMAD4 WILD-TYPE
  CLUS_1             4              52
  CLUS_2             8              61
  CLUS_3             3              48
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SMAD4 MUTATED        2      9      4
  SMAD4 WILD-TYPE     40     75     46
D7V10, multiclass
        clus
vv       SMAD4 MUTATED SMAD4 WILD-TYPE
  CLUS_1             2              40
  CLUS_2             9              75
  CLUS_3             4              46

Clustering(8) Variable = RHOA MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RHOA MUTATED       10      1      2      0      0
  RHOA WILD-TYPE     94     19     35      6     52
D8V1, multiclass
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RHOA MUTATED        2      2      7
  RHOA WILD-TYPE     64     44     56
D8V2, multiclass
        clus
vv       RHOA MUTATED RHOA WILD-TYPE
  CLUS_1            2             64
  CLUS_2            2             44
  CLUS_3            7             56
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RHOA MUTATED        3      4      5
  RHOA WILD-TYPE     59     64     62
D8V3, multiclass
        clus
vv       RHOA MUTATED RHOA WILD-TYPE
  CLUS_1            3             59
  CLUS_2            4             64
  CLUS_3            5             62
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RHOA MUTATED        4      2      6
  RHOA WILD-TYPE     77     34     74
D8V4, multiclass
        clus
vv       RHOA MUTATED RHOA WILD-TYPE
  CLUS_1            4             77
  CLUS_2            2             34
  CLUS_3            6             74
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RHOA MUTATED        2      4      2      3      1
  RHOA WILD-TYPE     46     39     28     27     43
D8V5, multiclass
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RHOA MUTATED        1      3      8
  RHOA WILD-TYPE     52     74     57
D8V6, multiclass
        clus
vv       RHOA MUTATED RHOA WILD-TYPE
  CLUS_1            1             52
  CLUS_2            3             74
  CLUS_3            8             57
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RHOA MUTATED        4      9      0
  RHOA WILD-TYPE     80     60     67
D8V7, multiclass
        clus
vv       RHOA MUTATED RHOA WILD-TYPE
  CLUS_1            4             80
  CLUS_2            9             60
  CLUS_3            0             67
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RHOA MUTATED        8      1      4
  RHOA WILD-TYPE     64     53     90
D8V8, multiclass
        clus
vv       RHOA MUTATED RHOA WILD-TYPE
  CLUS_1            8             64
  CLUS_2            1             53
  CLUS_3            4             90
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RHOA MUTATED        4      0      7
  RHOA WILD-TYPE     52     69     44
D8V9, multiclass
        clus
vv       RHOA MUTATED RHOA WILD-TYPE
  CLUS_1            4             52
  CLUS_2            0             69
  CLUS_3            7             44
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RHOA MUTATED        1      3      7
  RHOA WILD-TYPE     41     81     43
D8V10, multiclass
        clus
vv       RHOA MUTATED RHOA WILD-TYPE
  CLUS_1            1             41
  CLUS_2            3             81
  CLUS_3            7             43

Clustering(9) Variable = IRF2 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  IRF2 MUTATED       10      1      0      1      2
  IRF2 WILD-TYPE     94     19     37      5     50
D9V1, multiclass
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  IRF2 MUTATED        6      1      2
  IRF2 WILD-TYPE     60     45     61
D9V2, multiclass
        clus
vv       IRF2 MUTATED IRF2 WILD-TYPE
  CLUS_1            6             60
  CLUS_2            1             45
  CLUS_3            2             61
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  IRF2 MUTATED        8      2      3
  IRF2 WILD-TYPE     54     66     64
D9V3, multiclass
        clus
vv       IRF2 MUTATED IRF2 WILD-TYPE
  CLUS_1            8             54
  CLUS_2            2             66
  CLUS_3            3             64
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  IRF2 MUTATED        6      3      4
  IRF2 WILD-TYPE     75     33     76
D9V4, multiclass
        clus
vv       IRF2 MUTATED IRF2 WILD-TYPE
  CLUS_1            6             75
  CLUS_2            3             33
  CLUS_3            4             76
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  IRF2 MUTATED        6      2      1      1      1
  IRF2 WILD-TYPE     42     41     29     29     43
D9V5, multiclass
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  IRF2 MUTATED        2      6      3
  IRF2 WILD-TYPE     51     71     62
D9V6, multiclass
        clus
vv       IRF2 MUTATED IRF2 WILD-TYPE
  CLUS_1            2             51
  CLUS_2            6             71
  CLUS_3            3             62
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  IRF2 MUTATED       10      1      3
  IRF2 WILD-TYPE     74     68     64
D9V7, multiclass
        clus
vv       IRF2 MUTATED IRF2 WILD-TYPE
  CLUS_1           10             74
  CLUS_2            1             68
  CLUS_3            3             64
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  IRF2 MUTATED        4      0     10
  IRF2 WILD-TYPE     68     54     84
D9V8, multiclass
        clus
vv       IRF2 MUTATED IRF2 WILD-TYPE
  CLUS_1            4             68
  CLUS_2            0             54
  CLUS_3           10             84
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  IRF2 MUTATED        4      5      0
  IRF2 WILD-TYPE     52     64     51
D9V9, multiclass
        clus
vv       IRF2 MUTATED IRF2 WILD-TYPE
  CLUS_1            4             52
  CLUS_2            5             64
  CLUS_3            0             51
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  IRF2 MUTATED        2      7      0
  IRF2 WILD-TYPE     40     77     50
D9V10, multiclass
        clus
vv       IRF2 MUTATED IRF2 WILD-TYPE
  CLUS_1            2             40
  CLUS_2            7             77
  CLUS_3            0             50

Clustering(10) Variable = CDH1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CDH1 MUTATED       13      1      3      0      0
  CDH1 WILD-TYPE     91     19     34      6     52
D10V1, multiclass
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CDH1 MUTATED        5      2      7
  CDH1 WILD-TYPE     61     44     56
D10V2, multiclass
        clus
vv       CDH1 MUTATED CDH1 WILD-TYPE
  CLUS_1            5             61
  CLUS_2            2             44
  CLUS_3            7             56
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CDH1 MUTATED        4      8      6
  CDH1 WILD-TYPE     58     60     61
D10V3, multiclass
        clus
vv       CDH1 MUTATED CDH1 WILD-TYPE
  CLUS_1            4             58
  CLUS_2            8             60
  CLUS_3            6             61
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CDH1 MUTATED        7      2      9
  CDH1 WILD-TYPE     74     34     71
D10V4, multiclass
        clus
vv       CDH1 MUTATED CDH1 WILD-TYPE
  CLUS_1            7             74
  CLUS_2            2             34
  CLUS_3            9             71
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CDH1 MUTATED        2      7      1      4      2
  CDH1 WILD-TYPE     46     36     29     26     42
D10V5, multiclass
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CDH1 MUTATED        1      6      9
  CDH1 WILD-TYPE     52     71     56
D10V6, multiclass
        clus
vv       CDH1 MUTATED CDH1 WILD-TYPE
  CLUS_1            1             52
  CLUS_2            6             71
  CLUS_3            9             56
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CDH1 MUTATED        8      9      1
  CDH1 WILD-TYPE     76     60     66
D10V7, multiclass
        clus
vv       CDH1 MUTATED CDH1 WILD-TYPE
  CLUS_1            8             76
  CLUS_2            9             60
  CLUS_3            1             66
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CDH1 MUTATED       10      1      7
  CDH1 WILD-TYPE     62     53     87
D10V8, multiclass
        clus
vv       CDH1 MUTATED CDH1 WILD-TYPE
  CLUS_1           10             62
  CLUS_2            1             53
  CLUS_3            7             87
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CDH1 MUTATED        5      2      7
  CDH1 WILD-TYPE     51     67     44
D10V9, multiclass
        clus
vv       CDH1 MUTATED CDH1 WILD-TYPE
  CLUS_1            5             51
  CLUS_2            2             67
  CLUS_3            7             44
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CDH1 MUTATED        1      6      7
  CDH1 WILD-TYPE     41     78     43
D10V10, multiclass
        clus
vv       CDH1 MUTATED CDH1 WILD-TYPE
  CLUS_1            1             41
  CLUS_2            6             78
  CLUS_3            7             43

Clustering(11) Variable = PTEN MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PTEN MUTATED       12      0      0      1      1
  PTEN WILD-TYPE     92     20     37      5     51
D11V1, multiclass
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PTEN MUTATED        6      1      2
  PTEN WILD-TYPE     60     45     61
D11V2, multiclass
        clus
vv       PTEN MUTATED PTEN WILD-TYPE
  CLUS_1            6             60
  CLUS_2            1             45
  CLUS_3            2             61
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PTEN MUTATED        8      0      5
  PTEN WILD-TYPE     54     68     62
D11V3, multiclass
        clus
vv       PTEN MUTATED PTEN WILD-TYPE
  CLUS_1            8             54
  CLUS_2            0             68
  CLUS_3            5             62
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PTEN MUTATED       10      2      1
  PTEN WILD-TYPE     71     34     79
D11V4, multiclass
        clus
vv       PTEN MUTATED PTEN WILD-TYPE
  CLUS_1           10             71
  CLUS_2            2             34
  CLUS_3            1             79
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PTEN MUTATED       10      1      0      2      1
  PTEN WILD-TYPE     38     42     30     28     43
D11V5, multiclass
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PTEN MUTATED        1     11      2
  PTEN WILD-TYPE     52     66     63
D11V6, multiclass
        clus
vv       PTEN MUTATED PTEN WILD-TYPE
  CLUS_1            1             52
  CLUS_2           11             66
  CLUS_3            2             63
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PTEN MUTATED        9      2      3
  PTEN WILD-TYPE     75     67     64
D11V7, multiclass
        clus
vv       PTEN MUTATED PTEN WILD-TYPE
  CLUS_1            9             75
  CLUS_2            2             67
  CLUS_3            3             64
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PTEN MUTATED        3      0     11
  PTEN WILD-TYPE     69     54     83
D11V8, multiclass
        clus
vv       PTEN MUTATED PTEN WILD-TYPE
  CLUS_1            3             69
  CLUS_2            0             54
  CLUS_3           11             83
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PTEN MUTATED        5      3      1
  PTEN WILD-TYPE     51     66     50
D11V9, multiclass
        clus
vv       PTEN MUTATED PTEN WILD-TYPE
  CLUS_1            5             51
  CLUS_2            3             66
  CLUS_3            1             50
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PTEN MUTATED        0      9      0
  PTEN WILD-TYPE     42     75     50
D11V10, multiclass
        clus
vv       PTEN MUTATED PTEN WILD-TYPE
  CLUS_1            0             42
  CLUS_2            9             75
  CLUS_3            0             50

Clustering(12) Variable = FBXW7 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FBXW7 MUTATED       15      1      1      0      2
  FBXW7 WILD-TYPE     89     19     36      6     50
D12V1, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FBXW7 MUTATED       11      2      2
  FBXW7 WILD-TYPE     55     44     61
D12V2, multiclass
        clus
vv       FBXW7 MUTATED FBXW7 WILD-TYPE
  CLUS_1            11              55
  CLUS_2             2              44
  CLUS_3             2              61
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FBXW7 MUTATED       12      1      5
  FBXW7 WILD-TYPE     50     67     62
D12V3, multiclass
        clus
vv       FBXW7 MUTATED FBXW7 WILD-TYPE
  CLUS_1            12              50
  CLUS_2             1              67
  CLUS_3             5              62
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FBXW7 MUTATED       11      5      2
  FBXW7 WILD-TYPE     70     31     78
D12V4, multiclass
        clus
vv       FBXW7 MUTATED FBXW7 WILD-TYPE
  CLUS_1            11              70
  CLUS_2             5              31
  CLUS_3             2              78
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FBXW7 MUTATED       10      1      1      2      2
  FBXW7 WILD-TYPE     38     42     29     28     42
D12V5, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FBXW7 MUTATED        4      9      3
  FBXW7 WILD-TYPE     49     68     62
D12V6, multiclass
        clus
vv       FBXW7 MUTATED FBXW7 WILD-TYPE
  CLUS_1             4              49
  CLUS_2             9              68
  CLUS_3             3              62
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FBXW7 MUTATED       11      3      5
  FBXW7 WILD-TYPE     73     66     62
D12V7, multiclass
        clus
vv       FBXW7 MUTATED FBXW7 WILD-TYPE
  CLUS_1            11              73
  CLUS_2             3              66
  CLUS_3             5              62
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FBXW7 MUTATED        4      2     13
  FBXW7 WILD-TYPE     68     52     81
D12V8, multiclass
        clus
vv       FBXW7 MUTATED FBXW7 WILD-TYPE
  CLUS_1             4              68
  CLUS_2             2              52
  CLUS_3            13              81
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FBXW7 MUTATED        5     10      0
  FBXW7 WILD-TYPE     51     59     51
D12V9, multiclass
        clus
vv       FBXW7 MUTATED FBXW7 WILD-TYPE
  CLUS_1             5              51
  CLUS_2            10              59
  CLUS_3             0              51
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FBXW7 MUTATED        2     13      0
  FBXW7 WILD-TYPE     40     71     50
D12V10, multiclass
        clus
vv       FBXW7 MUTATED FBXW7 WILD-TYPE
  CLUS_1             2              40
  CLUS_2            13              71
  CLUS_3             0              50

Clustering(13) Variable = B2M MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  B2M MUTATED        8      0      0      0      0
  B2M WILD-TYPE     96     20     37      6     52
D13V1, multiclass
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  B2M MUTATED        7      0      1
  B2M WILD-TYPE     59     46     62
D13V2, multiclass
        clus
vv       B2M MUTATED B2M WILD-TYPE
  CLUS_1           7            59
  CLUS_2           0            46
  CLUS_3           1            62
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  B2M MUTATED        4      0      3
  B2M WILD-TYPE     58     68     64
D13V3, multiclass
        clus
vv       B2M MUTATED B2M WILD-TYPE
  CLUS_1           4            58
  CLUS_2           0            68
  CLUS_3           3            64
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  B2M MUTATED        3      2      2
  B2M WILD-TYPE     78     34     78
D13V4, multiclass
        clus
vv       B2M MUTATED B2M WILD-TYPE
  CLUS_1           3            78
  CLUS_2           2            34
  CLUS_3           2            78
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  B2M MUTATED        5      1      0      1      0
  B2M WILD-TYPE     43     42     30     29     44
D13V5, multiclass
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  B2M MUTATED        1      5      1
  B2M WILD-TYPE     52     72     64
D13V6, multiclass
        clus
vv       B2M MUTATED B2M WILD-TYPE
  CLUS_1           1            52
  CLUS_2           5            72
  CLUS_3           1            64
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  B2M MUTATED        5      2      1
  B2M WILD-TYPE     79     67     66
D13V7, multiclass
        clus
vv       B2M MUTATED B2M WILD-TYPE
  CLUS_1           5            79
  CLUS_2           2            67
  CLUS_3           1            66
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  B2M MUTATED        2      0      6
  B2M WILD-TYPE     70     54     88
D13V8, multiclass
        clus
vv       B2M MUTATED B2M WILD-TYPE
  CLUS_1           2            70
  CLUS_2           0            54
  CLUS_3           6            88
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  B2M MUTATED        4      2      2
  B2M WILD-TYPE     52     67     49
D13V9, multiclass
        clus
vv       B2M MUTATED B2M WILD-TYPE
  CLUS_1           4            52
  CLUS_2           2            67
  CLUS_3           2            49
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  B2M MUTATED        0      7      1
  B2M WILD-TYPE     42     77     49
D13V10, multiclass
        clus
vv       B2M MUTATED B2M WILD-TYPE
  CLUS_1           0            42
  CLUS_2           7            77
  CLUS_3           1            49

Clustering(14) Variable = FAM46D MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FAM46D MUTATED        3      0      0      0      3
  FAM46D WILD-TYPE    101     20     37      6     49
D14V1, multiclass
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  FAM46D MUTATED        1      2      2
  FAM46D WILD-TYPE     65     44     61
D14V2, multiclass
        clus
vv       FAM46D MUTATED FAM46D WILD-TYPE
  CLUS_1              1               65
  CLUS_2              2               44
  CLUS_3              2               61
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  FAM46D MUTATED        2      1      2
  FAM46D WILD-TYPE     60     67     65
D14V3, multiclass
        clus
vv       FAM46D MUTATED FAM46D WILD-TYPE
  CLUS_1              2               60
  CLUS_2              1               67
  CLUS_3              2               65
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  FAM46D MUTATED        3      2      0
  FAM46D WILD-TYPE     78     34     80
D14V4, multiclass
        clus
vv       FAM46D MUTATED FAM46D WILD-TYPE
  CLUS_1              3               78
  CLUS_2              2               34
  CLUS_3              0               80
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FAM46D MUTATED        0      1      0      3      2
  FAM46D WILD-TYPE     48     42     30     27     42
D14V5, multiclass
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  FAM46D MUTATED        2      2      2
  FAM46D WILD-TYPE     51     75     63
D14V6, multiclass
        clus
vv       FAM46D MUTATED FAM46D WILD-TYPE
  CLUS_1              2               51
  CLUS_2              2               75
  CLUS_3              2               63
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  FAM46D MUTATED        3      1      2
  FAM46D WILD-TYPE     81     68     65
D14V7, multiclass
        clus
vv       FAM46D MUTATED FAM46D WILD-TYPE
  CLUS_1              3               81
  CLUS_2              1               68
  CLUS_3              2               65
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  FAM46D MUTATED        1      2      3
  FAM46D WILD-TYPE     71     52     91
D14V8, multiclass
        clus
vv       FAM46D MUTATED FAM46D WILD-TYPE
  CLUS_1              1               71
  CLUS_2              2               52
  CLUS_3              3               91
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  FAM46D MUTATED        2      2      1
  FAM46D WILD-TYPE     54     67     50
D14V9, multiclass
        clus
vv       FAM46D MUTATED FAM46D WILD-TYPE
  CLUS_1              2               54
  CLUS_2              2               67
  CLUS_3              1               50
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  FAM46D MUTATED        2      2      1
  FAM46D WILD-TYPE     40     82     49
D14V10, multiclass
        clus
vv       FAM46D MUTATED FAM46D WILD-TYPE
  CLUS_1              2               40
  CLUS_2              2               82
  CLUS_3              1               49

Clustering(15) Variable = RNF43 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RNF43 MUTATED        7      1      0      0      1
  RNF43 WILD-TYPE     97     19     37      6     51
D15V1, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RNF43 MUTATED        3      1      2
  RNF43 WILD-TYPE     63     45     61
D15V2, multiclass
        clus
vv       RNF43 MUTATED RNF43 WILD-TYPE
  CLUS_1             3              63
  CLUS_2             1              45
  CLUS_3             2              61
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RNF43 MUTATED        4      2      3
  RNF43 WILD-TYPE     58     66     64
D15V3, multiclass
        clus
vv       RNF43 MUTATED RNF43 WILD-TYPE
  CLUS_1             4              58
  CLUS_2             2              66
  CLUS_3             3              64
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RNF43 MUTATED        5      3      1
  RNF43 WILD-TYPE     76     33     79
D15V4, multiclass
        clus
vv       RNF43 MUTATED RNF43 WILD-TYPE
  CLUS_1             5              76
  CLUS_2             3              33
  CLUS_3             1              79
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RNF43 MUTATED        2      1      0      3      1
  RNF43 WILD-TYPE     46     42     30     27     43
D15V5, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RNF43 MUTATED        1      3      3
  RNF43 WILD-TYPE     52     74     62
D15V6, multiclass
        clus
vv       RNF43 MUTATED RNF43 WILD-TYPE
  CLUS_1             1              52
  CLUS_2             3              74
  CLUS_3             3              62
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RNF43 MUTATED        5      2      2
  RNF43 WILD-TYPE     79     67     65
D15V7, multiclass
        clus
vv       RNF43 MUTATED RNF43 WILD-TYPE
  CLUS_1             5              79
  CLUS_2             2              67
  CLUS_3             2              65
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RNF43 MUTATED        3      0      6
  RNF43 WILD-TYPE     69     54     88
D15V8, multiclass
        clus
vv       RNF43 MUTATED RNF43 WILD-TYPE
  CLUS_1             3              69
  CLUS_2             0              54
  CLUS_3             6              88
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RNF43 MUTATED        2      3      1
  RNF43 WILD-TYPE     54     66     50
D15V9, multiclass
        clus
vv       RNF43 MUTATED RNF43 WILD-TYPE
  CLUS_1             2              54
  CLUS_2             3              66
  CLUS_3             1              50
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RNF43 MUTATED        0      5      1
  RNF43 WILD-TYPE     42     79     49
D15V10, multiclass
        clus
vv       RNF43 MUTATED RNF43 WILD-TYPE
  CLUS_1             0              42
  CLUS_2             5              79
  CLUS_3             1              49

Clustering(16) Variable = APC MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  APC MUTATED       16      4      3      1      9
  APC WILD-TYPE     88     16     34      5     43
D16V1, multiclass
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  APC MUTATED       12      7      3
  APC WILD-TYPE     54     39     60
D16V2, multiclass
        clus
vv       APC MUTATED APC WILD-TYPE
  CLUS_1          12            54
  CLUS_2           7            39
  CLUS_3           3            60
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  APC MUTATED       13      5     11
  APC WILD-TYPE     49     63     56
D16V3, multiclass
        clus
vv       APC MUTATED APC WILD-TYPE
  CLUS_1          13            49
  CLUS_2           5            63
  CLUS_3          11            56
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  APC MUTATED       17      5      7
  APC WILD-TYPE     64     31     73
D16V4, multiclass
        clus
vv       APC MUTATED APC WILD-TYPE
  CLUS_1          17            64
  CLUS_2           5            31
  CLUS_3           7            73
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  APC MUTATED        9      2      5      6      7
  APC WILD-TYPE     39     41     25     24     37
D16V5, multiclass
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  APC MUTATED        5     20      4
  APC WILD-TYPE     48     57     61
D16V6, multiclass
        clus
vv       APC MUTATED APC WILD-TYPE
  CLUS_1           5            48
  CLUS_2          20            57
  CLUS_3           4            61
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  APC MUTATED       19      4     10
  APC WILD-TYPE     65     65     57
D16V7, multiclass
        clus
vv       APC MUTATED APC WILD-TYPE
  CLUS_1          19            65
  CLUS_2           4            65
  CLUS_3          10            57
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  APC MUTATED        4      7     22
  APC WILD-TYPE     68     47     72
D16V8, multiclass
        clus
vv       APC MUTATED APC WILD-TYPE
  CLUS_1           4            68
  CLUS_2           7            47
  CLUS_3          22            72
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  APC MUTATED        8     12      2
  APC WILD-TYPE     48     57     49
D16V9, multiclass
        clus
vv       APC MUTATED APC WILD-TYPE
  CLUS_1           8            48
  CLUS_2          12            57
  CLUS_3           2            49
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  APC MUTATED        5     16      1
  APC WILD-TYPE     37     68     49
D16V10, multiclass
        clus
vv       APC MUTATED APC WILD-TYPE
  CLUS_1           5            37
  CLUS_2          16            68
  CLUS_3           1            49

Clustering(17) Variable = WSB2 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  WSB2 MUTATED        6      0      1      0      0
  WSB2 WILD-TYPE     98     20     36      6     52
D17V1, multiclass
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  WSB2 MUTATED        5      0      1
  WSB2 WILD-TYPE     61     46     62
D17V2, multiclass
        clus
vv       WSB2 MUTATED WSB2 WILD-TYPE
  CLUS_1            5             61
  CLUS_2            0             46
  CLUS_3            1             62
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  WSB2 MUTATED        4      0      3
  WSB2 WILD-TYPE     58     68     64
D17V3, multiclass
        clus
vv       WSB2 MUTATED WSB2 WILD-TYPE
  CLUS_1            4             58
  CLUS_2            0             68
  CLUS_3            3             64
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  WSB2 MUTATED        5      2      0
  WSB2 WILD-TYPE     76     34     80
D17V4, multiclass
        clus
vv       WSB2 MUTATED WSB2 WILD-TYPE
  CLUS_1            5             76
  CLUS_2            2             34
  CLUS_3            0             80
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  WSB2 MUTATED        4      0      1      2      0
  WSB2 WILD-TYPE     44     43     29     28     44
D17V5, multiclass
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  WSB2 MUTATED        1      6      0
  WSB2 WILD-TYPE     52     71     65
D17V6, multiclass
        clus
vv       WSB2 MUTATED WSB2 WILD-TYPE
  CLUS_1            1             52
  CLUS_2            6             71
  CLUS_3            0             65
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  WSB2 MUTATED        7      0      0
  WSB2 WILD-TYPE     77     69     67
D17V7, multiclass
        clus
vv       WSB2 MUTATED WSB2 WILD-TYPE
  CLUS_1            7             77
  CLUS_2            0             69
  CLUS_3            0             67
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  WSB2 MUTATED        1      0      6
  WSB2 WILD-TYPE     71     54     88
D17V8, multiclass
        clus
vv       WSB2 MUTATED WSB2 WILD-TYPE
  CLUS_1            1             71
  CLUS_2            0             54
  CLUS_3            6             88
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  WSB2 MUTATED        4      2      0
  WSB2 WILD-TYPE     52     67     51
D17V9, multiclass
        clus
vv       WSB2 MUTATED WSB2 WILD-TYPE
  CLUS_1            4             52
  CLUS_2            2             67
  CLUS_3            0             51
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  WSB2 MUTATED        0      6      0
  WSB2 WILD-TYPE     42     78     50
D17V10, multiclass
        clus
vv       WSB2 MUTATED WSB2 WILD-TYPE
  CLUS_1            0             42
  CLUS_2            6             78
  CLUS_3            0             50

Clustering(18) Variable = MAP2K7 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MAP2K7 MUTATED       12      1      1      0      0
  MAP2K7 WILD-TYPE     92     19     36      6     52
D18V1, multiclass
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  MAP2K7 MUTATED        8      1      2
  MAP2K7 WILD-TYPE     58     45     61
D18V2, multiclass
        clus
vv       MAP2K7 MUTATED MAP2K7 WILD-TYPE
  CLUS_1              8               58
  CLUS_2              1               45
  CLUS_3              2               61
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  MAP2K7 MUTATED        3      5      5
  MAP2K7 WILD-TYPE     59     63     62
D18V3, multiclass
        clus
vv       MAP2K7 MUTATED MAP2K7 WILD-TYPE
  CLUS_1              3               59
  CLUS_2              5               63
  CLUS_3              5               62
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  MAP2K7 MUTATED        6      3      4
  MAP2K7 WILD-TYPE     75     33     76
D18V4, multiclass
        clus
vv       MAP2K7 MUTATED MAP2K7 WILD-TYPE
  CLUS_1              6               75
  CLUS_2              3               33
  CLUS_3              4               76
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MAP2K7 MUTATED        7      3      1      0      1
  MAP2K7 WILD-TYPE     41     40     29     30     43
D18V5, multiclass
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  MAP2K7 MUTATED        2      7      3
  MAP2K7 WILD-TYPE     51     70     62
D18V6, multiclass
        clus
vv       MAP2K7 MUTATED MAP2K7 WILD-TYPE
  CLUS_1              2               51
  CLUS_2              7               70
  CLUS_3              3               62
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  MAP2K7 MUTATED        9      2      3
  MAP2K7 WILD-TYPE     75     67     64
D18V7, multiclass
        clus
vv       MAP2K7 MUTATED MAP2K7 WILD-TYPE
  CLUS_1              9               75
  CLUS_2              2               67
  CLUS_3              3               64
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  MAP2K7 MUTATED        3      1     10
  MAP2K7 WILD-TYPE     69     53     84
D18V8, multiclass
        clus
vv       MAP2K7 MUTATED MAP2K7 WILD-TYPE
  CLUS_1              3               69
  CLUS_2              1               53
  CLUS_3             10               84
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  MAP2K7 MUTATED        4      5      2
  MAP2K7 WILD-TYPE     52     64     49
D18V9, multiclass
        clus
vv       MAP2K7 MUTATED MAP2K7 WILD-TYPE
  CLUS_1              4               52
  CLUS_2              5               64
  CLUS_3              2               49
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  MAP2K7 MUTATED        1      8      2
  MAP2K7 WILD-TYPE     41     76     48
D18V10, multiclass
        clus
vv       MAP2K7 MUTATED MAP2K7 WILD-TYPE
  CLUS_1              1               41
  CLUS_2              8               76
  CLUS_3              2               48

Clustering(19) Variable = TRPS1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TRPS1 MUTATED       16      2      2      1      9
  TRPS1 WILD-TYPE     88     18     35      5     43
D19V1, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TRPS1 MUTATED       14      5      3
  TRPS1 WILD-TYPE     52     41     60
D19V2, multiclass
        clus
vv       TRPS1 MUTATED TRPS1 WILD-TYPE
  CLUS_1            14              52
  CLUS_2             5              41
  CLUS_3             3              60
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TRPS1 MUTATED       12      5     11
  TRPS1 WILD-TYPE     50     63     56
D19V3, multiclass
        clus
vv       TRPS1 MUTATED TRPS1 WILD-TYPE
  CLUS_1            12              50
  CLUS_2             5              63
  CLUS_3            11              56
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TRPS1 MUTATED       13      8      7
  TRPS1 WILD-TYPE     68     28     73
D19V4, multiclass
        clus
vv       TRPS1 MUTATED TRPS1 WILD-TYPE
  CLUS_1            13              68
  CLUS_2             8              28
  CLUS_3             7              73
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TRPS1 MUTATED       12      2      1      4      7
  TRPS1 WILD-TYPE     36     41     29     26     37
D19V5, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TRPS1 MUTATED        9     12      5
  TRPS1 WILD-TYPE     44     65     60
D19V6, multiclass
        clus
vv       TRPS1 MUTATED TRPS1 WILD-TYPE
  CLUS_1             9              44
  CLUS_2            12              65
  CLUS_3             5              60
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TRPS1 MUTATED       13      6     11
  TRPS1 WILD-TYPE     71     63     56
D19V7, multiclass
        clus
vv       TRPS1 MUTATED TRPS1 WILD-TYPE
  CLUS_1            13              71
  CLUS_2             6              63
  CLUS_3            11              56
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TRPS1 MUTATED        8      7     15
  TRPS1 WILD-TYPE     64     47     79
D19V8, multiclass
        clus
vv       TRPS1 MUTATED TRPS1 WILD-TYPE
  CLUS_1             8              64
  CLUS_2             7              47
  CLUS_3            15              79
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TRPS1 MUTATED        8     10      4
  TRPS1 WILD-TYPE     48     59     47
D19V9, multiclass
        clus
vv       TRPS1 MUTATED TRPS1 WILD-TYPE
  CLUS_1             8              48
  CLUS_2            10              59
  CLUS_3             4              47
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TRPS1 MUTATED        4     15      3
  TRPS1 WILD-TYPE     38     69     47
D19V10, multiclass
        clus
vv       TRPS1 MUTATED TRPS1 WILD-TYPE
  CLUS_1             4              38
  CLUS_2            15              69
  CLUS_3             3              47

Clustering(20) Variable = C13ORF33 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C13ORF33 MUTATED        4      0      1      1      0
  C13ORF33 WILD-TYPE    100     20     36      5     52
D20V1, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C13ORF33 MUTATED        6      0      0
  C13ORF33 WILD-TYPE     60     46     63
D20V2, multiclass
        clus
vv       C13ORF33 MUTATED C13ORF33 WILD-TYPE
  CLUS_1                6                 60
  CLUS_2                0                 46
  CLUS_3                0                 63
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C13ORF33 MUTATED        5      1      0
  C13ORF33 WILD-TYPE     57     67     67
D20V3, multiclass
        clus
vv       C13ORF33 MUTATED C13ORF33 WILD-TYPE
  CLUS_1                5                 57
  CLUS_2                1                 67
  CLUS_3                0                 67
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C13ORF33 MUTATED        4      2      0
  C13ORF33 WILD-TYPE     77     34     80
D20V4, multiclass
        clus
vv       C13ORF33 MUTATED C13ORF33 WILD-TYPE
  CLUS_1                4                 77
  CLUS_2                2                 34
  CLUS_3                0                 80
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C13ORF33 MUTATED        3      0      1      0      0
  C13ORF33 WILD-TYPE     45     43     29     30     44
D20V5, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C13ORF33 MUTATED        0      3      1
  C13ORF33 WILD-TYPE     53     74     64
D20V6, multiclass
        clus
vv       C13ORF33 MUTATED C13ORF33 WILD-TYPE
  CLUS_1                0                 53
  CLUS_2                3                 74
  CLUS_3                1                 64
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C13ORF33 MUTATED        1      3      2
  C13ORF33 WILD-TYPE     83     66     65
D20V7, multiclass
        clus
vv       C13ORF33 MUTATED C13ORF33 WILD-TYPE
  CLUS_1                1                 83
  CLUS_2                3                 66
  CLUS_3                2                 65
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C13ORF33 MUTATED        3      0      3
  C13ORF33 WILD-TYPE     69     54     91
D20V8, multiclass
        clus
vv       C13ORF33 MUTATED C13ORF33 WILD-TYPE
  CLUS_1                3                 69
  CLUS_2                0                 54
  CLUS_3                3                 91
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C13ORF33 MUTATED        0      4      2
  C13ORF33 WILD-TYPE     56     65     49
D20V9, multiclass
        clus
vv       C13ORF33 MUTATED C13ORF33 WILD-TYPE
  CLUS_1                0                 56
  CLUS_2                4                 65
  CLUS_3                2                 49
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C13ORF33 MUTATED        0      5      1
  C13ORF33 WILD-TYPE     42     79     49
D20V10, multiclass
        clus
vv       C13ORF33 MUTATED C13ORF33 WILD-TYPE
  CLUS_1                0                 42
  CLUS_2                5                 79
  CLUS_3                1                 49
> q(save="no")
