
R version 2.10.1 (2009-12-14)
Copyright (C) 2009 The R Foundation for Statistical Computing
ISBN 3-900051-07-0

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> source("/xchip/tcga/gdac_prod/applications/process_mgmt/firehose_task_registry/tcga-gdac/GDAC_Correlate_Genomic_Events/broadinstitute.org/cancer.genome.analysis/10441/13/Correlate_Genomic_Events.R")
> result <- main("/xchip/tcga/gdac_prod/applications/process_mgmt/firehose_task_registry/tcga-gdac/GDAC_Correlate_Genomic_Events/broadinstitute.org/cancer.genome.analysis/10441/13/", "-nF=/xchip/tcga/Tools/Nozzle/v1.current", "-tTRUE", "-iD=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/THCA-TP/8312485/transformed.cor.cli.txt", "-iC=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering/THCA-TP/8312256/THCA-TP.transferedmergedcluster.txt", "-fF=", "-fC=3", "-fH=5", "-fW=9", "-fP=OUT", "-cP=0.05", "-cQ=0.25", "-MF=ONLYSIG", "-oT=THCA-TP", "-nV=Nozzle.R1", "-OP=MUTSIG", "-iT=", "-iX=")
[1] "terrence_modification_tag"
[1] TRUE
[1] "nver"          "-nV=Nozzle.R1"
[1] "nfn"                                 "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "successfully load Nozzle.R1"
[1] "ofn"         "-oT=THCA-TP"
[1] "opt"        "-OP=MUTSIG"
[1] "tl"   "-iT="
[1] "dx"   "-iX="
[1] "opt"    "MUTSIG"
[1] "dx" ""  
[1] "cfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering/THCA-TP/8312256/THCA-TP.transferedmergedcluster.txt"
[1] "dfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/THCA-TP/8312485/transformed.cor.cli.txt"

nPatients in clinical file=496, in cluster file=494, common to both=494
[1] "Reduce the number of clustering variables from 35 to 30."
[1]  30 494
[1] "AMP PEAK 1(XQ22.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 1(XQ22.3) MUTATED AMP PEAK 1(XQ22.3) WILD-TYPE 
                          15                          479 
  AMP PEAK 1(XQ22.3) MUTATED AMP PEAK 1(XQ22.3) WILD-TYPE 
                          15                          479 
[1] "DEL PEAK  1(1Q24.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  1(1Q24.2) MUTATED DEL PEAK  1(1Q24.2) WILD-TYPE 
                            3                           491 
  DEL PEAK  1(1Q24.2) MUTATED DEL PEAK  1(1Q24.2) WILD-TYPE 
                            3                           491 
[1] "DEL PEAK  2(2P23.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  2(2P23.1) MUTATED DEL PEAK  2(2P23.1) WILD-TYPE 
                           12                           482 
  DEL PEAK  2(2P23.1) MUTATED DEL PEAK  2(2P23.1) WILD-TYPE 
                           12                           482 
[1] "DEL PEAK  3(2Q35) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  3(2Q35) MUTATED DEL PEAK  3(2Q35) WILD-TYPE 
                         12                         482 
  DEL PEAK  3(2Q35) MUTATED DEL PEAK  3(2Q35) WILD-TYPE 
                         12                         482 
[1] "DEL PEAK  4(5P15.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  4(5P15.2) MUTATED DEL PEAK  4(5P15.2) WILD-TYPE 
                            4                           490 
  DEL PEAK  4(5P15.2) MUTATED DEL PEAK  4(5P15.2) WILD-TYPE 
                            4                           490 
[1] "DEL PEAK  6(6Q22.31) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  6(6Q22.31) MUTATED DEL PEAK  6(6Q22.31) WILD-TYPE 
                             7                            487 
  DEL PEAK  6(6Q22.31) MUTATED DEL PEAK  6(6Q22.31) WILD-TYPE 
                             7                            487 
[1] "DEL PEAK  8(7Q34) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  8(7Q34) MUTATED DEL PEAK  8(7Q34) WILD-TYPE 
                          4                         490 
  DEL PEAK  8(7Q34) MUTATED DEL PEAK  8(7Q34) WILD-TYPE 
                          4                         490 
[1] "DEL PEAK  9(8P23.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  9(8P23.2) MUTATED DEL PEAK  9(8P23.2) WILD-TYPE 
                            4                           490 
  DEL PEAK  9(8P23.2) MUTATED DEL PEAK  9(8P23.2) WILD-TYPE 
                            4                           490 
[1] "DEL PEAK 10(8P22) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 10(8P22) MUTATED DEL PEAK 10(8P22) WILD-TYPE 
                          4                         490 
  DEL PEAK 10(8P22) MUTATED DEL PEAK 10(8P22) WILD-TYPE 
                          4                         490 
[1] "DEL PEAK 11(8P12) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 11(8P12) MUTATED DEL PEAK 11(8P12) WILD-TYPE 
                          4                         490 
  DEL PEAK 11(8P12) MUTATED DEL PEAK 11(8P12) WILD-TYPE 
                          4                         490 
[1] "DEL PEAK 12(8Q24.22) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 12(8Q24.22) MUTATED DEL PEAK 12(8Q24.22) WILD-TYPE 
                             7                            487 
  DEL PEAK 12(8Q24.22) MUTATED DEL PEAK 12(8Q24.22) WILD-TYPE 
                             7                            487 
[1] "DEL PEAK 13(9Q21.13) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 13(9Q21.13) MUTATED DEL PEAK 13(9Q21.13) WILD-TYPE 
                            24                            470 
  DEL PEAK 13(9Q21.13) MUTATED DEL PEAK 13(9Q21.13) WILD-TYPE 
                            24                            470 
[1] "DEL PEAK 14(10Q21.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 14(10Q21.2) MUTATED DEL PEAK 14(10Q21.2) WILD-TYPE 
                            12                            482 
  DEL PEAK 14(10Q21.2) MUTATED DEL PEAK 14(10Q21.2) WILD-TYPE 
                            12                            482 
[1] "DEL PEAK 15(10Q23.31) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 15(10Q23.31) MUTATED DEL PEAK 15(10Q23.31) WILD-TYPE 
                             12                             482 
  DEL PEAK 15(10Q23.31) MUTATED DEL PEAK 15(10Q23.31) WILD-TYPE 
                             12                             482 
[1] "DEL PEAK 16(11P15.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 16(11P15.1) MUTATED DEL PEAK 16(11P15.1) WILD-TYPE 
                             7                            487 
  DEL PEAK 16(11P15.1) MUTATED DEL PEAK 16(11P15.1) WILD-TYPE 
                             7                            487 
[1] "DEL PEAK 17(13Q12.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 17(13Q12.3) MUTATED DEL PEAK 17(13Q12.3) WILD-TYPE 
                            16                            478 
  DEL PEAK 17(13Q12.3) MUTATED DEL PEAK 17(13Q12.3) WILD-TYPE 
                            16                            478 
[1] "DEL PEAK 18(13Q21.31) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 18(13Q21.31) MUTATED DEL PEAK 18(13Q21.31) WILD-TYPE 
                             18                             476 
  DEL PEAK 18(13Q21.31) MUTATED DEL PEAK 18(13Q21.31) WILD-TYPE 
                             18                             476 
[1] "DEL PEAK 19(15Q25.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 19(15Q25.3) MUTATED DEL PEAK 19(15Q25.3) WILD-TYPE 
                             9                            485 
  DEL PEAK 19(15Q25.3) MUTATED DEL PEAK 19(15Q25.3) WILD-TYPE 
                             9                            485 
[1] "DEL PEAK 21(16Q23.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 21(16Q23.3) MUTATED DEL PEAK 21(16Q23.3) WILD-TYPE 
                             6                            488 
  DEL PEAK 21(16Q23.3) MUTATED DEL PEAK 21(16Q23.3) WILD-TYPE 
                             6                            488 
[1] "DEL PEAK 22(17P13.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 22(17P13.1) MUTATED DEL PEAK 22(17P13.1) WILD-TYPE 
                             8                            486 
  DEL PEAK 22(17P13.1) MUTATED DEL PEAK 22(17P13.1) WILD-TYPE 
                             8                            486 
[1] "DEL PEAK 23(18P11.21) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 23(18P11.21) MUTATED DEL PEAK 23(18P11.21) WILD-TYPE 
                              4                             490 
  DEL PEAK 23(18P11.21) MUTATED DEL PEAK 23(18P11.21) WILD-TYPE 
                              4                             490 
[1] "DEL PEAK 24(18Q22.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 24(18Q22.2) MUTATED DEL PEAK 24(18Q22.2) WILD-TYPE 
                             5                            489 
  DEL PEAK 24(18Q22.2) MUTATED DEL PEAK 24(18Q22.2) WILD-TYPE 
                             5                            489 
[1] "DEL PEAK 25(19P13.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 25(19P13.2) MUTATED DEL PEAK 25(19P13.2) WILD-TYPE 
                             7                            487 
  DEL PEAK 25(19P13.2) MUTATED DEL PEAK 25(19P13.2) WILD-TYPE 
                             7                            487 
[1] "DEL PEAK 28(21Q21.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 28(21Q21.1) MUTATED DEL PEAK 28(21Q21.1) WILD-TYPE 
                             9                            485 
  DEL PEAK 28(21Q21.1) MUTATED DEL PEAK 28(21Q21.1) WILD-TYPE 
                             9                            485 
[1] "DEL PEAK 29(22Q13.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 29(22Q13.1) MUTATED DEL PEAK 29(22Q13.1) WILD-TYPE 
                            86                            408 
  DEL PEAK 29(22Q13.1) MUTATED DEL PEAK 29(22Q13.1) WILD-TYPE 
                            86                            408 
[1] "DEL PEAK 30(22Q13.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 30(22Q13.2) MUTATED DEL PEAK 30(22Q13.2) WILD-TYPE 
                            86                            408 
  DEL PEAK 30(22Q13.2) MUTATED DEL PEAK 30(22Q13.2) WILD-TYPE 
                            86                            408 
[1] "DEL PEAK 31(22Q13.31) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 31(22Q13.31) MUTATED DEL PEAK 31(22Q13.31) WILD-TYPE 
                             86                             408 
  DEL PEAK 31(22Q13.31) MUTATED DEL PEAK 31(22Q13.31) WILD-TYPE 
                             86                             408 
[1] "DEL PEAK 32(22Q13.32) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 32(22Q13.32) MUTATED DEL PEAK 32(22Q13.32) WILD-TYPE 
                             87                             407 
  DEL PEAK 32(22Q13.32) MUTATED DEL PEAK 32(22Q13.32) WILD-TYPE 
                             87                             407 
[1] "DEL PEAK 33(XQ22.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 33(XQ22.1) MUTATED DEL PEAK 33(XQ22.1) WILD-TYPE 
                            6                           488 
  DEL PEAK 33(XQ22.1) MUTATED DEL PEAK 33(XQ22.1) WILD-TYPE 
                            6                           488 
[1] "DEL PEAK 34(XQ22.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 34(XQ22.3) MUTATED DEL PEAK 34(XQ22.3) WILD-TYPE 
                            4                           490 
  DEL PEAK 34(XQ22.3) MUTATED DEL PEAK 34(XQ22.3) WILD-TYPE 
                            4                           490 
[1] "terrence_modification_tag"
[1] TRUE
[1] "data2feature, selection="
 [1] "CN_CNMF"                     "METHLYATION_CNMF"           
 [3] "RPPA_CNMF"                   "RPPA_CHIERARCHICAL"         
 [5] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
 [7] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
 [9] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"

Input Data has 10 rows and 494 columns.

Variable 1:'CN_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 2:'METHLYATION_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 3:'RPPA_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 4:'RPPA_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 5:'MRNASEQ_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 6:'MRNASEQ_CHIERARCHICAL':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 7:'MIRSEQ_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'MIRSEQ_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 9:'MIRSEQ_MATURE_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 10:'MIRSEQ_MATURE_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
[1] "rownames(nsurv.mat)"
 [1] "CN_CNMF"                     "METHLYATION_CNMF"           
 [3] "RPPA_CNMF"                   "RPPA_CHIERARCHICAL"         
 [5] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
 [7] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
 [9] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"
[1] "TUMOR.?STAGE"
[1] "TUMOR.?GRADE"
[1] "PATHOLOGY.T"
[1] "PATHOLOGY.N"
Output Data has 494 columns, 0 survival variables, and 10 non-survival variables.
CN_CNMF, nv=3, binary=FALSE, numeric=FALSE
METHLYATION_CNMF, nv=3, binary=FALSE, numeric=FALSE
RPPA_CNMF, nv=3, binary=FALSE, numeric=FALSE
RPPA_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE
MRNASEQ_CNMF, nv=4, binary=FALSE, numeric=FALSE
MRNASEQ_CHIERARCHICAL, nv=4, binary=FALSE, numeric=FALSE
MIRSEQ_CNMF, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CNMF, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE

Clustering(1) Variable = AMP PEAK 1(XQ22.3) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 1(XQ22.3) MUTATED        7      8      0
  AMP PEAK 1(XQ22.3) WILD-TYPE     27    375     77
D1V1, multiclass
        clus
vv       AMP PEAK 1(XQ22.3) MUTATED AMP PEAK 1(XQ22.3) WILD-TYPE
  CLUS_1                          7                           27
  CLUS_2                          8                          375
  CLUS_3                          0                           77
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 1(XQ22.3) MUTATED        6      2      7
  AMP PEAK 1(XQ22.3) WILD-TYPE    145     81    253
D1V2, multiclass
        clus
vv       AMP PEAK 1(XQ22.3) MUTATED AMP PEAK 1(XQ22.3) WILD-TYPE
  CLUS_1                          6                          145
  CLUS_2                          2                           81
  CLUS_3                          7                          253
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 1(XQ22.3) MUTATED        1      2      1
  AMP PEAK 1(XQ22.3) WILD-TYPE     60     77     80
D1V3, multiclass
        clus
vv       AMP PEAK 1(XQ22.3) MUTATED AMP PEAK 1(XQ22.3) WILD-TYPE
  CLUS_1                          1                           60
  CLUS_2                          2                           77
  CLUS_3                          1                           80
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 1(XQ22.3) MUTATED        1      0      3
  AMP PEAK 1(XQ22.3) WILD-TYPE     30     94     93
D1V4, multiclass
        clus
vv       AMP PEAK 1(XQ22.3) MUTATED AMP PEAK 1(XQ22.3) WILD-TYPE
  CLUS_1                          1                           30
  CLUS_2                          0                           94
  CLUS_3                          3                           93
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 1(XQ22.3) MUTATED        6      1      2      6
  AMP PEAK 1(XQ22.3) WILD-TYPE    148     54    114    161
D1V5, multiclass
        clus
vv       AMP PEAK 1(XQ22.3) MUTATED AMP PEAK 1(XQ22.3) WILD-TYPE
  CLUS_1                          6                          148
  CLUS_2                          1                           54
  CLUS_3                          2                          114
  CLUS_4                          6                          161
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 1(XQ22.3) MUTATED        5      6      2      2
  AMP PEAK 1(XQ22.3) WILD-TYPE    192    122     94     69
D1V6, multiclass
        clus
vv       AMP PEAK 1(XQ22.3) MUTATED AMP PEAK 1(XQ22.3) WILD-TYPE
  CLUS_1                          5                          192
  CLUS_2                          6                          122
  CLUS_3                          2                           94
  CLUS_4                          2                           69
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 1(XQ22.3) MUTATED        5      5      5
  AMP PEAK 1(XQ22.3) WILD-TYPE    145    168    165
D1V7, multiclass
        clus
vv       AMP PEAK 1(XQ22.3) MUTATED AMP PEAK 1(XQ22.3) WILD-TYPE
  CLUS_1                          5                          145
  CLUS_2                          5                          168
  CLUS_3                          5                          165
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 1(XQ22.3) MUTATED        4      5      6
  AMP PEAK 1(XQ22.3) WILD-TYPE    151    125    202
D1V8, multiclass
        clus
vv       AMP PEAK 1(XQ22.3) MUTATED AMP PEAK 1(XQ22.3) WILD-TYPE
  CLUS_1                          4                          151
  CLUS_2                          5                          125
  CLUS_3                          6                          202
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 1(XQ22.3) MUTATED        5      6      4
  AMP PEAK 1(XQ22.3) WILD-TYPE    158    163    157
D1V9, multiclass
        clus
vv       AMP PEAK 1(XQ22.3) MUTATED AMP PEAK 1(XQ22.3) WILD-TYPE
  CLUS_1                          5                          158
  CLUS_2                          6                          163
  CLUS_3                          4                          157
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 1(XQ22.3) MUTATED        6      5      4
  AMP PEAK 1(XQ22.3) WILD-TYPE    193    123    162
D1V10, multiclass
        clus
vv       AMP PEAK 1(XQ22.3) MUTATED AMP PEAK 1(XQ22.3) WILD-TYPE
  CLUS_1                          6                          193
  CLUS_2                          5                          123
  CLUS_3                          4                          162

Clustering(2) Variable = DEL PEAK  1(1Q24.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1Q24.2) MUTATED        3      0      0
  DEL PEAK  1(1Q24.2) WILD-TYPE     31    383     77
D2V1, multiclass
        clus
vv       DEL PEAK  1(1Q24.2) MUTATED DEL PEAK  1(1Q24.2) WILD-TYPE
  CLUS_1                           3                            31
  CLUS_2                           0                           383
  CLUS_3                           0                            77
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1Q24.2) MUTATED        3      0      0
  DEL PEAK  1(1Q24.2) WILD-TYPE    148     83    260
D2V2, multiclass
        clus
vv       DEL PEAK  1(1Q24.2) MUTATED DEL PEAK  1(1Q24.2) WILD-TYPE
  CLUS_1                           3                           148
  CLUS_2                           0                            83
  CLUS_3                           0                           260
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1Q24.2) MUTATED        0      0      2
  DEL PEAK  1(1Q24.2) WILD-TYPE     61     79     79
D2V3, multiclass
[1] "Remove cluster labels:"      "DEL PEAK  1(1Q24.2) MUTATED"
clus
  DEL PEAK  1(1Q24.2) MUTATED DEL PEAK  1(1Q24.2) WILD-TYPE 
                            2                           219 
                   TCGA-BJ-A0YZ                    TCGA-BJ-A0Z0 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-BJ-A0Z2                    TCGA-BJ-A0Z3 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-BJ-A0Z5                    TCGA-BJ-A0Z9 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-BJ-A0ZA                    TCGA-BJ-A0ZB 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-BJ-A0ZC                    TCGA-BJ-A0ZE 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-BJ-A0ZG                    TCGA-BJ-A0ZJ 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-BJ-A18Y                    TCGA-BJ-A18Z 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-BJ-A190                    TCGA-BJ-A191 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-BJ-A192                    TCGA-BJ-A28R 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-BJ-A28S                    TCGA-BJ-A28T 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-BJ-A28V                    TCGA-BJ-A28W 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-BJ-A28Z                    TCGA-BJ-A290 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-BJ-A291                    TCGA-BJ-A2N7 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-BJ-A2N9                    TCGA-BJ-A2NA 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-BJ-A2P4                    TCGA-BJ-A3EZ 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-BJ-A3F0                    TCGA-CE-A13K 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-CE-A27D                    TCGA-CE-A3MD 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-CE-A3ME                    TCGA-DE-A0Y2 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-DE-A2OL                    TCGA-DE-A3KN 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-DJ-A13M                    TCGA-DJ-A13O 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-DJ-A13R                    TCGA-DJ-A13S 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-DJ-A13V                    TCGA-DJ-A13W 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-DJ-A13X                    TCGA-DJ-A1QD 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-DJ-A1QE                    TCGA-DJ-A1QF 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-DJ-A1QG                    TCGA-DJ-A1QI 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-DJ-A1QL                    TCGA-DJ-A1QM 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-DJ-A1QN                    TCGA-DJ-A1QO 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-DJ-A2PN                    TCGA-DJ-A2PO 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-DJ-A2PP                    TCGA-DJ-A2PQ 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-DJ-A2PR                    TCGA-DJ-A2PS 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-DJ-A2PU                    TCGA-DJ-A2PV 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-DJ-A2PW                    TCGA-DJ-A2PY 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-DJ-A2PZ                    TCGA-DJ-A2Q0 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-DJ-A2Q1                    TCGA-DJ-A2Q2 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-DJ-A2Q4                    TCGA-DJ-A2Q5 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-DJ-A2Q6                    TCGA-DJ-A2Q7 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-DJ-A2Q8                    TCGA-DJ-A2Q9 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-DJ-A2QA                    TCGA-DJ-A2QB 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-DJ-A2QC                    TCGA-DO-A1JZ 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-DO-A1K0                    TCGA-E3-A3DY 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-E3-A3DZ                    TCGA-E3-A3E0 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-E3-A3E1                    TCGA-E3-A3E3 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-E3-A3E5                    TCGA-E8-A2EA 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-E8-A2JQ                    TCGA-EL-A3CL 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-EL-A3CM                    TCGA-EL-A3CN 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-EL-A3CO                    TCGA-EL-A3CP 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-EL-A3CR                    TCGA-EL-A3CS 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-EL-A3CT                    TCGA-EL-A3CU 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-EL-A3CV                    TCGA-EL-A3CW 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-EL-A3CX                    TCGA-EL-A3CY 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-EL-A3CZ                    TCGA-EL-A3D0 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-EL-A3D1                    TCGA-EL-A3D4 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-EL-A3D5                    TCGA-EL-A3D6 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-EL-A3GO                    TCGA-EL-A3GP 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-EL-A3GQ                    TCGA-EL-A3GR 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-EL-A3GS                    TCGA-EL-A3GU 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-EL-A3GV                    TCGA-EL-A3GW 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-EL-A3GX                    TCGA-EL-A3GY 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-EL-A3GZ                    TCGA-EL-A3H1 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-EL-A3H2                    TCGA-EL-A3H3 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-EL-A3H4                    TCGA-EL-A3H5 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-EL-A3H7                    TCGA-EL-A3H8 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-EL-A3MW                    TCGA-EL-A3MX 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-EL-A3MY                    TCGA-EL-A3MZ 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-EL-A3N2                    TCGA-EL-A3N3 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-EM-A1CT                    TCGA-EM-A1CU 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-EM-A1CV                    TCGA-EM-A1CW 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-EM-A1YA                    TCGA-EM-A1YB 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-EM-A1YC                    TCGA-EM-A1YD 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-EM-A22I                    TCGA-EM-A22J 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-EM-A22L                    TCGA-EM-A22M 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-EM-A22O                    TCGA-EM-A22Q 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-EM-A2CJ                    TCGA-EM-A2CK 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-EM-A2CL                    TCGA-EM-A2CN 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-EM-A2CO                    TCGA-EM-A2CP 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-EM-A2CQ                    TCGA-EM-A2CS 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-EM-A2CU                    TCGA-EM-A2OV 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-EM-A2OY                    TCGA-EM-A2P1 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-EM-A3AI                    TCGA-EM-A3AJ 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-EM-A3AL                    TCGA-EM-A3AN 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-EM-A3AO                    TCGA-EM-A3AP 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-EM-A3FJ                    TCGA-EM-A3FL 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-EM-A3FN                    TCGA-EM-A3FO 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-EM-A3FP                    TCGA-ET-A25G 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-ET-A25L                    TCGA-ET-A25M 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-ET-A25O                    TCGA-ET-A2MY 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-ET-A2MZ                    TCGA-ET-A2N0 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-ET-A2N1                    TCGA-ET-A2N4 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-ET-A2N5                    TCGA-ET-A39I 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-ET-A39J                    TCGA-ET-A39L 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-ET-A39M                    TCGA-ET-A39P 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-ET-A39R                    TCGA-ET-A39T 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-ET-A3BN                    TCGA-ET-A3BP 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-ET-A3BS                    TCGA-ET-A3BT 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-ET-A3BU                    TCGA-ET-A3BV 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-ET-A3BW                    TCGA-ET-A3BX 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-ET-A3DO                    TCGA-ET-A3DP 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-ET-A3DS                    TCGA-ET-A3DT 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-ET-A3DV                    TCGA-ET-A3DW 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-FE-A22Z                    TCGA-FE-A230 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-FE-A231                    TCGA-FE-A232 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-FE-A233                    TCGA-FE-A234 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-FE-A235                    TCGA-FE-A236 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-FE-A237                    TCGA-FE-A239 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-FE-A23A                    TCGA-FY-A2QD 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-FY-A3BL                    TCGA-FY-A3ON 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-GE-A2C6                    TCGA-H2-A2K9 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-IM-A3EB                    TCGA-IM-A3ED 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-J8-A3NZ                    TCGA-J8-A3O0 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-J8-A3O1 
"DEL PEAK  1(1Q24.2) WILD-TYPE" 
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1Q24.2) MUTATED        0      0      2
  DEL PEAK  1(1Q24.2) WILD-TYPE     31     94     94
D2V4, multiclass
[1] "Remove cluster labels:"      "DEL PEAK  1(1Q24.2) MUTATED"
clus
  DEL PEAK  1(1Q24.2) MUTATED DEL PEAK  1(1Q24.2) WILD-TYPE 
                            2                           219 
                   TCGA-BJ-A0YZ                    TCGA-BJ-A0Z0 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-BJ-A0Z2                    TCGA-BJ-A0Z3 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-BJ-A0Z5                    TCGA-BJ-A0Z9 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-BJ-A0ZA                    TCGA-BJ-A0ZB 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-BJ-A0ZC                    TCGA-BJ-A0ZE 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-BJ-A0ZG                    TCGA-BJ-A0ZJ 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-BJ-A18Y                    TCGA-BJ-A18Z 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-BJ-A190                    TCGA-BJ-A191 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-BJ-A192                    TCGA-BJ-A28R 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-BJ-A28S                    TCGA-BJ-A28T 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-BJ-A28V                    TCGA-BJ-A28W 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-BJ-A28Z                    TCGA-BJ-A290 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-BJ-A291                    TCGA-BJ-A2N7 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-BJ-A2N9                    TCGA-BJ-A2NA 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-BJ-A2P4                    TCGA-BJ-A3EZ 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-BJ-A3F0                    TCGA-CE-A13K 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-CE-A27D                    TCGA-CE-A3MD 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-CE-A3ME                    TCGA-DE-A0Y2 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-DE-A2OL                    TCGA-DE-A3KN 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-DJ-A13M                    TCGA-DJ-A13O 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-DJ-A13R                    TCGA-DJ-A13S 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-DJ-A13V                    TCGA-DJ-A13W 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-DJ-A13X                    TCGA-DJ-A1QD 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-DJ-A1QE                    TCGA-DJ-A1QF 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-DJ-A1QG                    TCGA-DJ-A1QI 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-DJ-A1QL                    TCGA-DJ-A1QM 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-DJ-A1QN                    TCGA-DJ-A1QO 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-DJ-A2PN                    TCGA-DJ-A2PO 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-DJ-A2PP                    TCGA-DJ-A2PQ 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-DJ-A2PR                    TCGA-DJ-A2PS 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-DJ-A2PU                    TCGA-DJ-A2PV 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-DJ-A2PW                    TCGA-DJ-A2PY 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-DJ-A2PZ                    TCGA-DJ-A2Q0 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-DJ-A2Q1                    TCGA-DJ-A2Q2 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-DJ-A2Q4                    TCGA-DJ-A2Q5 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-DJ-A2Q6                    TCGA-DJ-A2Q7 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-DJ-A2Q8                    TCGA-DJ-A2Q9 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-DJ-A2QA                    TCGA-DJ-A2QB 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-DJ-A2QC                    TCGA-DO-A1JZ 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-DO-A1K0                    TCGA-E3-A3DY 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-E3-A3DZ                    TCGA-E3-A3E0 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-E3-A3E1                    TCGA-E3-A3E3 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-E3-A3E5                    TCGA-E8-A2EA 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-E8-A2JQ                    TCGA-EL-A3CL 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-EL-A3CM                    TCGA-EL-A3CN 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-EL-A3CO                    TCGA-EL-A3CP 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-EL-A3CR                    TCGA-EL-A3CS 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-EL-A3CT                    TCGA-EL-A3CU 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-EL-A3CV                    TCGA-EL-A3CW 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-EL-A3CX                    TCGA-EL-A3CY 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-EL-A3CZ                    TCGA-EL-A3D0 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-EL-A3D1                    TCGA-EL-A3D4 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-EL-A3D5                    TCGA-EL-A3D6 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-EL-A3GO                    TCGA-EL-A3GP 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-EL-A3GQ                    TCGA-EL-A3GR 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-EL-A3GS                    TCGA-EL-A3GU 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-EL-A3GV                    TCGA-EL-A3GW 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-EL-A3GX                    TCGA-EL-A3GY 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-EL-A3GZ                    TCGA-EL-A3H1 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-EL-A3H2                    TCGA-EL-A3H3 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-EL-A3H4                    TCGA-EL-A3H5 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-EL-A3H7                    TCGA-EL-A3H8 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-EL-A3MW                    TCGA-EL-A3MX 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-EL-A3MY                    TCGA-EL-A3MZ 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-EL-A3N2                    TCGA-EL-A3N3 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-EM-A1CT                    TCGA-EM-A1CU 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-EM-A1CV                    TCGA-EM-A1CW 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-EM-A1YA                    TCGA-EM-A1YB 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-EM-A1YC                    TCGA-EM-A1YD 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-EM-A22I                    TCGA-EM-A22J 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-EM-A22L                    TCGA-EM-A22M 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-EM-A22O                    TCGA-EM-A22Q 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-EM-A2CJ                    TCGA-EM-A2CK 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-EM-A2CL                    TCGA-EM-A2CN 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-EM-A2CO                    TCGA-EM-A2CP 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-EM-A2CQ                    TCGA-EM-A2CS 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-EM-A2CU                    TCGA-EM-A2OV 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-EM-A2OY                    TCGA-EM-A2P1 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-EM-A3AI                    TCGA-EM-A3AJ 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-EM-A3AL                    TCGA-EM-A3AN 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-EM-A3AO                    TCGA-EM-A3AP 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-EM-A3FJ                    TCGA-EM-A3FL 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-EM-A3FN                    TCGA-EM-A3FO 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-EM-A3FP                    TCGA-ET-A25G 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-ET-A25L                    TCGA-ET-A25M 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-ET-A25O                    TCGA-ET-A2MY 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-ET-A2MZ                    TCGA-ET-A2N0 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-ET-A2N1                    TCGA-ET-A2N4 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-ET-A2N5                    TCGA-ET-A39I 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-ET-A39J                    TCGA-ET-A39L 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-ET-A39M                    TCGA-ET-A39P 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-ET-A39R                    TCGA-ET-A39T 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-ET-A3BN                    TCGA-ET-A3BP 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-ET-A3BS                    TCGA-ET-A3BT 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-ET-A3BU                    TCGA-ET-A3BV 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-ET-A3BW                    TCGA-ET-A3BX 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-ET-A3DO                    TCGA-ET-A3DP 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-ET-A3DS                    TCGA-ET-A3DT 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-ET-A3DV                    TCGA-ET-A3DW 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-FE-A22Z                    TCGA-FE-A230 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-FE-A231                    TCGA-FE-A232 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-FE-A233                    TCGA-FE-A234 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-FE-A235                    TCGA-FE-A236 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-FE-A237                    TCGA-FE-A239 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-FE-A23A                    TCGA-FY-A2QD 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-FY-A3BL                    TCGA-FY-A3ON 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-GE-A2C6                    TCGA-H2-A2K9 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-IM-A3EB                    TCGA-IM-A3ED 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-J8-A3NZ                    TCGA-J8-A3O0 
"DEL PEAK  1(1Q24.2) WILD-TYPE" "DEL PEAK  1(1Q24.2) WILD-TYPE" 
                   TCGA-J8-A3O1 
"DEL PEAK  1(1Q24.2) WILD-TYPE" 
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  1(1Q24.2) MUTATED        3      0      0      0
  DEL PEAK  1(1Q24.2) WILD-TYPE    151     55    116    167
D2V5, multiclass
        clus
vv       DEL PEAK  1(1Q24.2) MUTATED DEL PEAK  1(1Q24.2) WILD-TYPE
  CLUS_1                           3                           151
  CLUS_2                           0                            55
  CLUS_3                           0                           116
  CLUS_4                           0                           167
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  1(1Q24.2) MUTATED        0      3      0      0
  DEL PEAK  1(1Q24.2) WILD-TYPE    197    125     96     71
D2V6, multiclass
        clus
vv       DEL PEAK  1(1Q24.2) MUTATED DEL PEAK  1(1Q24.2) WILD-TYPE
  CLUS_1                           0                           197
  CLUS_2                           3                           125
  CLUS_3                           0                            96
  CLUS_4                           0                            71
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1Q24.2) MUTATED        3      0      0
  DEL PEAK  1(1Q24.2) WILD-TYPE    147    173    170
D2V7, multiclass
        clus
vv       DEL PEAK  1(1Q24.2) MUTATED DEL PEAK  1(1Q24.2) WILD-TYPE
  CLUS_1                           3                           147
  CLUS_2                           0                           173
  CLUS_3                           0                           170
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1Q24.2) MUTATED        0      3      0
  DEL PEAK  1(1Q24.2) WILD-TYPE    155    127    208
D2V8, multiclass
        clus
vv       DEL PEAK  1(1Q24.2) MUTATED DEL PEAK  1(1Q24.2) WILD-TYPE
  CLUS_1                           0                           155
  CLUS_2                           3                           127
  CLUS_3                           0                           208
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1Q24.2) MUTATED        3      0      0
  DEL PEAK  1(1Q24.2) WILD-TYPE    160    169    161
D2V9, multiclass
        clus
vv       DEL PEAK  1(1Q24.2) MUTATED DEL PEAK  1(1Q24.2) WILD-TYPE
  CLUS_1                           3                           160
  CLUS_2                           0                           169
  CLUS_3                           0                           161
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1Q24.2) MUTATED        0      3      0
  DEL PEAK  1(1Q24.2) WILD-TYPE    199    125    166
D2V10, multiclass
        clus
vv       DEL PEAK  1(1Q24.2) MUTATED DEL PEAK  1(1Q24.2) WILD-TYPE
  CLUS_1                           0                           199
  CLUS_2                           3                           125
  CLUS_3                           0                           166

Clustering(3) Variable = DEL PEAK  2(2P23.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(2P23.1) MUTATED        9      1      2
  DEL PEAK  2(2P23.1) WILD-TYPE     25    382     75
D3V1, multiclass
        clus
vv       DEL PEAK  2(2P23.1) MUTATED DEL PEAK  2(2P23.1) WILD-TYPE
  CLUS_1                           9                            25
  CLUS_2                           1                           382
  CLUS_3                           2                            75
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(2P23.1) MUTATED       11      1      0
  DEL PEAK  2(2P23.1) WILD-TYPE    140     82    260
D3V2, multiclass
        clus
vv       DEL PEAK  2(2P23.1) MUTATED DEL PEAK  2(2P23.1) WILD-TYPE
  CLUS_1                          11                           140
  CLUS_2                           1                            82
  CLUS_3                           0                           260
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(2P23.1) MUTATED        1      3      2
  DEL PEAK  2(2P23.1) WILD-TYPE     60     76     79
D3V3, multiclass
        clus
vv       DEL PEAK  2(2P23.1) MUTATED DEL PEAK  2(2P23.1) WILD-TYPE
  CLUS_1                           1                            60
  CLUS_2                           3                            76
  CLUS_3                           2                            79
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(2P23.1) MUTATED        3      0      3
  DEL PEAK  2(2P23.1) WILD-TYPE     28     94     93
D3V4, multiclass
        clus
vv       DEL PEAK  2(2P23.1) MUTATED DEL PEAK  2(2P23.1) WILD-TYPE
  CLUS_1                           3                            28
  CLUS_2                           0                            94
  CLUS_3                           3                            93
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  2(2P23.1) MUTATED       12      0      0      0
  DEL PEAK  2(2P23.1) WILD-TYPE    142     55    116    167
D3V5, multiclass
        clus
vv       DEL PEAK  2(2P23.1) MUTATED DEL PEAK  2(2P23.1) WILD-TYPE
  CLUS_1                          12                           142
  CLUS_2                           0                            55
  CLUS_3                           0                           116
  CLUS_4                           0                           167
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  2(2P23.1) MUTATED        0     11      0      1
  DEL PEAK  2(2P23.1) WILD-TYPE    197    117     96     70
D3V6, multiclass
        clus
vv       DEL PEAK  2(2P23.1) MUTATED DEL PEAK  2(2P23.1) WILD-TYPE
  CLUS_1                           0                           197
  CLUS_2                          11                           117
  CLUS_3                           0                            96
  CLUS_4                           1                            70
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(2P23.1) MUTATED       12      0      0
  DEL PEAK  2(2P23.1) WILD-TYPE    138    173    170
D3V7, multiclass
        clus
vv       DEL PEAK  2(2P23.1) MUTATED DEL PEAK  2(2P23.1) WILD-TYPE
  CLUS_1                          12                           138
  CLUS_2                           0                           173
  CLUS_3                           0                           170
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(2P23.1) MUTATED        0     12      0
  DEL PEAK  2(2P23.1) WILD-TYPE    155    118    208
D3V8, multiclass
        clus
vv       DEL PEAK  2(2P23.1) MUTATED DEL PEAK  2(2P23.1) WILD-TYPE
  CLUS_1                           0                           155
  CLUS_2                          12                           118
  CLUS_3                           0                           208
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(2P23.1) MUTATED       12      0      0
  DEL PEAK  2(2P23.1) WILD-TYPE    151    169    161
D3V9, multiclass
        clus
vv       DEL PEAK  2(2P23.1) MUTATED DEL PEAK  2(2P23.1) WILD-TYPE
  CLUS_1                          12                           151
  CLUS_2                           0                           169
  CLUS_3                           0                           161
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(2P23.1) MUTATED        0     12      0
  DEL PEAK  2(2P23.1) WILD-TYPE    199    116    166
D3V10, multiclass
        clus
vv       DEL PEAK  2(2P23.1) MUTATED DEL PEAK  2(2P23.1) WILD-TYPE
  CLUS_1                           0                           199
  CLUS_2                          12                           116
  CLUS_3                           0                           166

Clustering(4) Variable = DEL PEAK  3(2Q35) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(2Q35) MUTATED       11      1      0
  DEL PEAK  3(2Q35) WILD-TYPE     23    382     77
D4V1, multiclass
        clus
vv       DEL PEAK  3(2Q35) MUTATED DEL PEAK  3(2Q35) WILD-TYPE
  CLUS_1                        11                          23
  CLUS_2                         1                         382
  CLUS_3                         0                          77
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(2Q35) MUTATED       12      0      0
  DEL PEAK  3(2Q35) WILD-TYPE    139     83    260
D4V2, multiclass
        clus
vv       DEL PEAK  3(2Q35) MUTATED DEL PEAK  3(2Q35) WILD-TYPE
  CLUS_1                        12                         139
  CLUS_2                         0                          83
  CLUS_3                         0                         260
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(2Q35) MUTATED        1      4      3
  DEL PEAK  3(2Q35) WILD-TYPE     60     75     78
D4V3, multiclass
        clus
vv       DEL PEAK  3(2Q35) MUTATED DEL PEAK  3(2Q35) WILD-TYPE
  CLUS_1                         1                          60
  CLUS_2                         4                          75
  CLUS_3                         3                          78
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(2Q35) MUTATED        4      0      4
  DEL PEAK  3(2Q35) WILD-TYPE     27     94     92
D4V4, multiclass
        clus
vv       DEL PEAK  3(2Q35) MUTATED DEL PEAK  3(2Q35) WILD-TYPE
  CLUS_1                         4                          27
  CLUS_2                         0                          94
  CLUS_3                         4                          92
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  3(2Q35) MUTATED       12      0      0      0
  DEL PEAK  3(2Q35) WILD-TYPE    142     55    116    167
D4V5, multiclass
        clus
vv       DEL PEAK  3(2Q35) MUTATED DEL PEAK  3(2Q35) WILD-TYPE
  CLUS_1                        12                         142
  CLUS_2                         0                          55
  CLUS_3                         0                         116
  CLUS_4                         0                         167
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  3(2Q35) MUTATED        0     12      0      0
  DEL PEAK  3(2Q35) WILD-TYPE    197    116     96     71
D4V6, multiclass
        clus
vv       DEL PEAK  3(2Q35) MUTATED DEL PEAK  3(2Q35) WILD-TYPE
  CLUS_1                         0                         197
  CLUS_2                        12                         116
  CLUS_3                         0                          96
  CLUS_4                         0                          71
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(2Q35) MUTATED       12      0      0
  DEL PEAK  3(2Q35) WILD-TYPE    138    173    170
D4V7, multiclass
        clus
vv       DEL PEAK  3(2Q35) MUTATED DEL PEAK  3(2Q35) WILD-TYPE
  CLUS_1                        12                         138
  CLUS_2                         0                         173
  CLUS_3                         0                         170
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(2Q35) MUTATED        0     12      0
  DEL PEAK  3(2Q35) WILD-TYPE    155    118    208
D4V8, multiclass
        clus
vv       DEL PEAK  3(2Q35) MUTATED DEL PEAK  3(2Q35) WILD-TYPE
  CLUS_1                         0                         155
  CLUS_2                        12                         118
  CLUS_3                         0                         208
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(2Q35) MUTATED       12      0      0
  DEL PEAK  3(2Q35) WILD-TYPE    151    169    161
D4V9, multiclass
        clus
vv       DEL PEAK  3(2Q35) MUTATED DEL PEAK  3(2Q35) WILD-TYPE
  CLUS_1                        12                         151
  CLUS_2                         0                         169
  CLUS_3                         0                         161
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(2Q35) MUTATED        0     12      0
  DEL PEAK  3(2Q35) WILD-TYPE    199    116    166
D4V10, multiclass
        clus
vv       DEL PEAK  3(2Q35) MUTATED DEL PEAK  3(2Q35) WILD-TYPE
  CLUS_1                         0                         199
  CLUS_2                        12                         116
  CLUS_3                         0                         166

Clustering(5) Variable = DEL PEAK  4(5P15.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(5P15.2) MUTATED        1      3      0
  DEL PEAK  4(5P15.2) WILD-TYPE     33    380     77
D5V1, multiclass
        clus
vv       DEL PEAK  4(5P15.2) MUTATED DEL PEAK  4(5P15.2) WILD-TYPE
  CLUS_1                           1                            33
  CLUS_2                           3                           380
  CLUS_3                           0                            77
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(5P15.2) MUTATED        0      1      3
  DEL PEAK  4(5P15.2) WILD-TYPE    151     82    257
D5V2, multiclass
        clus
vv       DEL PEAK  4(5P15.2) MUTATED DEL PEAK  4(5P15.2) WILD-TYPE
  CLUS_1                           0                           151
  CLUS_2                           1                            82
  CLUS_3                           3                           257
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(5P15.2) MUTATED        0      0      0
  DEL PEAK  4(5P15.2) WILD-TYPE     61     79     81
D5V3, multiclass
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(5P15.2) MUTATED        0      0      0
  DEL PEAK  4(5P15.2) WILD-TYPE     31     94     96
D5V4, multiclass
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  4(5P15.2) MUTATED        0      0      2      2
  DEL PEAK  4(5P15.2) WILD-TYPE    154     55    114    165
D5V5, multiclass
        clus
vv       DEL PEAK  4(5P15.2) MUTATED DEL PEAK  4(5P15.2) WILD-TYPE
  CLUS_1                           0                           154
  CLUS_2                           0                            55
  CLUS_3                           2                           114
  CLUS_4                           2                           165
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  4(5P15.2) MUTATED        3      0      0      1
  DEL PEAK  4(5P15.2) WILD-TYPE    194    128     96     70
D5V6, multiclass
        clus
vv       DEL PEAK  4(5P15.2) MUTATED DEL PEAK  4(5P15.2) WILD-TYPE
  CLUS_1                           3                           194
  CLUS_2                           0                           128
  CLUS_3                           0                            96
  CLUS_4                           1                            70
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(5P15.2) MUTATED        0      2      2
  DEL PEAK  4(5P15.2) WILD-TYPE    150    171    168
D5V7, multiclass
        clus
vv       DEL PEAK  4(5P15.2) MUTATED DEL PEAK  4(5P15.2) WILD-TYPE
  CLUS_1                           0                           150
  CLUS_2                           2                           171
  CLUS_3                           2                           168
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(5P15.2) MUTATED        2      0      2
  DEL PEAK  4(5P15.2) WILD-TYPE    153    130    206
D5V8, multiclass
        clus
vv       DEL PEAK  4(5P15.2) MUTATED DEL PEAK  4(5P15.2) WILD-TYPE
  CLUS_1                           2                           153
  CLUS_2                           0                           130
  CLUS_3                           2                           206
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(5P15.2) MUTATED        0      2      2
  DEL PEAK  4(5P15.2) WILD-TYPE    163    167    159
D5V9, multiclass
        clus
vv       DEL PEAK  4(5P15.2) MUTATED DEL PEAK  4(5P15.2) WILD-TYPE
  CLUS_1                           0                           163
  CLUS_2                           2                           167
  CLUS_3                           2                           159
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(5P15.2) MUTATED        2      0      2
  DEL PEAK  4(5P15.2) WILD-TYPE    197    128    164
D5V10, multiclass
        clus
vv       DEL PEAK  4(5P15.2) MUTATED DEL PEAK  4(5P15.2) WILD-TYPE
  CLUS_1                           2                           197
  CLUS_2                           0                           128
  CLUS_3                           2                           164

Clustering(6) Variable = DEL PEAK  6(6Q22.31) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(6Q22.31) MUTATED        5      2      0
  DEL PEAK  6(6Q22.31) WILD-TYPE     29    381     77
D6V1, multiclass
        clus
vv       DEL PEAK  6(6Q22.31) MUTATED DEL PEAK  6(6Q22.31) WILD-TYPE
  CLUS_1                            5                             29
  CLUS_2                            2                            381
  CLUS_3                            0                             77
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(6Q22.31) MUTATED        6      1      0
  DEL PEAK  6(6Q22.31) WILD-TYPE    145     82    260
D6V2, multiclass
        clus
vv       DEL PEAK  6(6Q22.31) MUTATED DEL PEAK  6(6Q22.31) WILD-TYPE
  CLUS_1                            6                            145
  CLUS_2                            1                             82
  CLUS_3                            0                            260
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(6Q22.31) MUTATED        0      0      5
  DEL PEAK  6(6Q22.31) WILD-TYPE     61     79     76
D6V3, multiclass
        clus
vv       DEL PEAK  6(6Q22.31) MUTATED DEL PEAK  6(6Q22.31) WILD-TYPE
  CLUS_1                            0                             61
  CLUS_2                            0                             79
  CLUS_3                            5                             76
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(6Q22.31) MUTATED        0      1      4
  DEL PEAK  6(6Q22.31) WILD-TYPE     31     93     92
D6V4, multiclass
        clus
vv       DEL PEAK  6(6Q22.31) MUTATED DEL PEAK  6(6Q22.31) WILD-TYPE
  CLUS_1                            0                             31
  CLUS_2                            1                             93
  CLUS_3                            4                             92
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  6(6Q22.31) MUTATED        6      0      0      1
  DEL PEAK  6(6Q22.31) WILD-TYPE    148     55    116    166
D6V5, multiclass
        clus
vv       DEL PEAK  6(6Q22.31) MUTATED DEL PEAK  6(6Q22.31) WILD-TYPE
  CLUS_1                            6                            148
  CLUS_2                            0                             55
  CLUS_3                            0                            116
  CLUS_4                            1                            166
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  6(6Q22.31) MUTATED        1      6      0      0
  DEL PEAK  6(6Q22.31) WILD-TYPE    196    122     96     71
D6V6, multiclass
        clus
vv       DEL PEAK  6(6Q22.31) MUTATED DEL PEAK  6(6Q22.31) WILD-TYPE
  CLUS_1                            1                            196
  CLUS_2                            6                            122
  CLUS_3                            0                             96
  CLUS_4                            0                             71
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(6Q22.31) MUTATED        6      0      1
  DEL PEAK  6(6Q22.31) WILD-TYPE    144    173    169
D6V7, multiclass
        clus
vv       DEL PEAK  6(6Q22.31) MUTATED DEL PEAK  6(6Q22.31) WILD-TYPE
  CLUS_1                            6                            144
  CLUS_2                            0                            173
  CLUS_3                            1                            169
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(6Q22.31) MUTATED        0      6      1
  DEL PEAK  6(6Q22.31) WILD-TYPE    155    124    207
D6V8, multiclass
        clus
vv       DEL PEAK  6(6Q22.31) MUTATED DEL PEAK  6(6Q22.31) WILD-TYPE
  CLUS_1                            0                            155
  CLUS_2                            6                            124
  CLUS_3                            1                            207
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(6Q22.31) MUTATED        6      0      1
  DEL PEAK  6(6Q22.31) WILD-TYPE    157    169    160
D6V9, multiclass
        clus
vv       DEL PEAK  6(6Q22.31) MUTATED DEL PEAK  6(6Q22.31) WILD-TYPE
  CLUS_1                            6                            157
  CLUS_2                            0                            169
  CLUS_3                            1                            160
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(6Q22.31) MUTATED        1      6      0
  DEL PEAK  6(6Q22.31) WILD-TYPE    198    122    166
D6V10, multiclass
        clus
vv       DEL PEAK  6(6Q22.31) MUTATED DEL PEAK  6(6Q22.31) WILD-TYPE
  CLUS_1                            1                            198
  CLUS_2                            6                            122
  CLUS_3                            0                            166

Clustering(7) Variable = DEL PEAK  8(7Q34) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(7Q34) MUTATED        0      3      1
  DEL PEAK  8(7Q34) WILD-TYPE     34    380     76
D7V1, multiclass
        clus
vv       DEL PEAK  8(7Q34) MUTATED DEL PEAK  8(7Q34) WILD-TYPE
  CLUS_1                         0                          34
  CLUS_2                         3                         380
  CLUS_3                         1                          76
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(7Q34) MUTATED        2      0      2
  DEL PEAK  8(7Q34) WILD-TYPE    149     83    258
D7V2, multiclass
        clus
vv       DEL PEAK  8(7Q34) MUTATED DEL PEAK  8(7Q34) WILD-TYPE
  CLUS_1                         2                         149
  CLUS_2                         0                          83
  CLUS_3                         2                         258
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(7Q34) MUTATED        0      1      0
  DEL PEAK  8(7Q34) WILD-TYPE     61     78     81
D7V3, multiclass
[1] "Remove cluster labels:"    "DEL PEAK  8(7Q34) MUTATED"
clus
  DEL PEAK  8(7Q34) MUTATED DEL PEAK  8(7Q34) WILD-TYPE 
                          1                         220 
                 TCGA-BJ-A0YZ                  TCGA-BJ-A0Z0 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-BJ-A0Z2                  TCGA-BJ-A0Z3 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-BJ-A0Z5                  TCGA-BJ-A0Z9 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-BJ-A0ZA                  TCGA-BJ-A0ZB 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-BJ-A0ZC                  TCGA-BJ-A0ZE 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-BJ-A0ZG                  TCGA-BJ-A0ZJ 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-BJ-A18Y                  TCGA-BJ-A18Z 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-BJ-A190                  TCGA-BJ-A191 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-BJ-A192                  TCGA-BJ-A28R 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-BJ-A28S                  TCGA-BJ-A28T 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-BJ-A28V                  TCGA-BJ-A28W 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-BJ-A28Z                  TCGA-BJ-A290 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-BJ-A291                  TCGA-BJ-A2N7 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-BJ-A2N9                  TCGA-BJ-A2NA 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-BJ-A2P4                  TCGA-BJ-A3EZ 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-BJ-A3F0                  TCGA-CE-A13K 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-CE-A27D                  TCGA-CE-A3MD 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-CE-A3ME                  TCGA-DE-A0Y2 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-DE-A2OL                  TCGA-DE-A3KN 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-DJ-A13M                  TCGA-DJ-A13O 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-DJ-A13R                  TCGA-DJ-A13S 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-DJ-A13V                  TCGA-DJ-A13W 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-DJ-A13X                  TCGA-DJ-A1QD 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-DJ-A1QE                  TCGA-DJ-A1QF 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-DJ-A1QG                  TCGA-DJ-A1QI 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-DJ-A1QL                  TCGA-DJ-A1QM 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-DJ-A1QN                  TCGA-DJ-A1QO 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-DJ-A2PN                  TCGA-DJ-A2PO 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-DJ-A2PP                  TCGA-DJ-A2PQ 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-DJ-A2PR                  TCGA-DJ-A2PS 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-DJ-A2PU                  TCGA-DJ-A2PV 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-DJ-A2PW                  TCGA-DJ-A2PY 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-DJ-A2PZ                  TCGA-DJ-A2Q0 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-DJ-A2Q1                  TCGA-DJ-A2Q2 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-DJ-A2Q4                  TCGA-DJ-A2Q5 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-DJ-A2Q6                  TCGA-DJ-A2Q7 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-DJ-A2Q9                  TCGA-DJ-A2QA 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-DJ-A2QB                  TCGA-DJ-A2QC 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-DO-A1JZ                  TCGA-DO-A1K0 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-E3-A3DY                  TCGA-E3-A3DZ 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-E3-A3E0                  TCGA-E3-A3E1 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-E3-A3E3                  TCGA-E3-A3E5 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-E8-A2EA                  TCGA-E8-A2JQ 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-EL-A3CL                  TCGA-EL-A3CM 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-EL-A3CN                  TCGA-EL-A3CO 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-EL-A3CP                  TCGA-EL-A3CR 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-EL-A3CS                  TCGA-EL-A3CT 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-EL-A3CU                  TCGA-EL-A3CV 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-EL-A3CW                  TCGA-EL-A3CX 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-EL-A3CY                  TCGA-EL-A3CZ 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-EL-A3D0                  TCGA-EL-A3D1 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-EL-A3D4                  TCGA-EL-A3D5 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-EL-A3D6                  TCGA-EL-A3GO 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-EL-A3GP                  TCGA-EL-A3GQ 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-EL-A3GR                  TCGA-EL-A3GS 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-EL-A3GU                  TCGA-EL-A3GV 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-EL-A3GW                  TCGA-EL-A3GX 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-EL-A3GY                  TCGA-EL-A3GZ 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-EL-A3H1                  TCGA-EL-A3H2 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-EL-A3H3                  TCGA-EL-A3H4 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-EL-A3H5                  TCGA-EL-A3H7 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-EL-A3H8                  TCGA-EL-A3MW 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-EL-A3MX                  TCGA-EL-A3MY 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-EL-A3MZ                  TCGA-EL-A3N2 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-EL-A3N3                  TCGA-EM-A1CT 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-EM-A1CU                  TCGA-EM-A1CV 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-EM-A1CW                  TCGA-EM-A1YA 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-EM-A1YB                  TCGA-EM-A1YC 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-EM-A1YD                  TCGA-EM-A1YE 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-EM-A22I                  TCGA-EM-A22J 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-EM-A22L                  TCGA-EM-A22M 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-EM-A22O                  TCGA-EM-A22Q 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-EM-A2CJ                  TCGA-EM-A2CK 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-EM-A2CL                  TCGA-EM-A2CN 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-EM-A2CO                  TCGA-EM-A2CP 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-EM-A2CQ                  TCGA-EM-A2CS 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-EM-A2CU                  TCGA-EM-A2OV 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-EM-A2OY                  TCGA-EM-A2P1 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-EM-A3AI                  TCGA-EM-A3AJ 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-EM-A3AL                  TCGA-EM-A3AN 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-EM-A3AO                  TCGA-EM-A3AP 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-EM-A3FJ                  TCGA-EM-A3FL 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-EM-A3FN                  TCGA-EM-A3FO 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-EM-A3FP                  TCGA-ET-A25G 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-ET-A25L                  TCGA-ET-A25M 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-ET-A25O                  TCGA-ET-A2MY 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-ET-A2MZ                  TCGA-ET-A2N0 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-ET-A2N1                  TCGA-ET-A2N4 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-ET-A2N5                  TCGA-ET-A39I 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-ET-A39J                  TCGA-ET-A39L 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-ET-A39M                  TCGA-ET-A39N 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-ET-A39P                  TCGA-ET-A39R 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-ET-A39T                  TCGA-ET-A3BN 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-ET-A3BP                  TCGA-ET-A3BS 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-ET-A3BT                  TCGA-ET-A3BU 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-ET-A3BV                  TCGA-ET-A3BW 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-ET-A3BX                  TCGA-ET-A3DO 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-ET-A3DP                  TCGA-ET-A3DS 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-ET-A3DT                  TCGA-ET-A3DV 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-ET-A3DW                  TCGA-FE-A22Z 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-FE-A230                  TCGA-FE-A231 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-FE-A232                  TCGA-FE-A233 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-FE-A234                  TCGA-FE-A235 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-FE-A236                  TCGA-FE-A237 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-FE-A239                  TCGA-FE-A23A 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-FY-A2QD                  TCGA-FY-A3BL 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-FY-A3ON                  TCGA-GE-A2C6 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-H2-A2K9                  TCGA-IM-A3EB 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-IM-A3ED                  TCGA-J8-A3NZ 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-J8-A3O0                  TCGA-J8-A3O1 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(7Q34) MUTATED        0      1      0
  DEL PEAK  8(7Q34) WILD-TYPE     31     93     96
D7V4, multiclass
[1] "Remove cluster labels:"    "DEL PEAK  8(7Q34) MUTATED"
clus
  DEL PEAK  8(7Q34) MUTATED DEL PEAK  8(7Q34) WILD-TYPE 
                          1                         220 
                 TCGA-BJ-A0YZ                  TCGA-BJ-A0Z0 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-BJ-A0Z2                  TCGA-BJ-A0Z3 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-BJ-A0Z5                  TCGA-BJ-A0Z9 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-BJ-A0ZA                  TCGA-BJ-A0ZB 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-BJ-A0ZC                  TCGA-BJ-A0ZE 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-BJ-A0ZG                  TCGA-BJ-A0ZJ 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-BJ-A18Y                  TCGA-BJ-A18Z 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-BJ-A190                  TCGA-BJ-A191 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-BJ-A192                  TCGA-BJ-A28R 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-BJ-A28S                  TCGA-BJ-A28T 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-BJ-A28V                  TCGA-BJ-A28W 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-BJ-A28Z                  TCGA-BJ-A290 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-BJ-A291                  TCGA-BJ-A2N7 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-BJ-A2N9                  TCGA-BJ-A2NA 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-BJ-A2P4                  TCGA-BJ-A3EZ 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-BJ-A3F0                  TCGA-CE-A13K 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-CE-A27D                  TCGA-CE-A3MD 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-CE-A3ME                  TCGA-DE-A0Y2 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-DE-A2OL                  TCGA-DE-A3KN 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-DJ-A13M                  TCGA-DJ-A13O 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-DJ-A13R                  TCGA-DJ-A13S 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-DJ-A13V                  TCGA-DJ-A13W 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-DJ-A13X                  TCGA-DJ-A1QD 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-DJ-A1QE                  TCGA-DJ-A1QF 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-DJ-A1QG                  TCGA-DJ-A1QI 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-DJ-A1QL                  TCGA-DJ-A1QM 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-DJ-A1QN                  TCGA-DJ-A1QO 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-DJ-A2PN                  TCGA-DJ-A2PO 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-DJ-A2PP                  TCGA-DJ-A2PQ 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-DJ-A2PR                  TCGA-DJ-A2PS 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-DJ-A2PU                  TCGA-DJ-A2PV 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-DJ-A2PW                  TCGA-DJ-A2PY 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-DJ-A2PZ                  TCGA-DJ-A2Q0 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-DJ-A2Q1                  TCGA-DJ-A2Q2 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-DJ-A2Q4                  TCGA-DJ-A2Q5 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-DJ-A2Q6                  TCGA-DJ-A2Q7 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-DJ-A2Q9                  TCGA-DJ-A2QA 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-DJ-A2QB                  TCGA-DJ-A2QC 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-DO-A1JZ                  TCGA-DO-A1K0 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-E3-A3DY                  TCGA-E3-A3DZ 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-E3-A3E0                  TCGA-E3-A3E1 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-E3-A3E3                  TCGA-E3-A3E5 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-E8-A2EA                  TCGA-E8-A2JQ 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-EL-A3CL                  TCGA-EL-A3CM 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-EL-A3CN                  TCGA-EL-A3CO 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-EL-A3CP                  TCGA-EL-A3CR 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-EL-A3CS                  TCGA-EL-A3CT 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-EL-A3CU                  TCGA-EL-A3CV 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-EL-A3CW                  TCGA-EL-A3CX 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-EL-A3CY                  TCGA-EL-A3CZ 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-EL-A3D0                  TCGA-EL-A3D1 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-EL-A3D4                  TCGA-EL-A3D5 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-EL-A3D6                  TCGA-EL-A3GO 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-EL-A3GP                  TCGA-EL-A3GQ 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-EL-A3GR                  TCGA-EL-A3GS 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-EL-A3GU                  TCGA-EL-A3GV 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-EL-A3GW                  TCGA-EL-A3GX 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-EL-A3GY                  TCGA-EL-A3GZ 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-EL-A3H1                  TCGA-EL-A3H2 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-EL-A3H3                  TCGA-EL-A3H4 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-EL-A3H5                  TCGA-EL-A3H7 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-EL-A3H8                  TCGA-EL-A3MW 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-EL-A3MX                  TCGA-EL-A3MY 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-EL-A3MZ                  TCGA-EL-A3N2 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-EL-A3N3                  TCGA-EM-A1CT 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-EM-A1CU                  TCGA-EM-A1CV 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-EM-A1CW                  TCGA-EM-A1YA 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-EM-A1YB                  TCGA-EM-A1YC 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-EM-A1YD                  TCGA-EM-A1YE 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-EM-A22I                  TCGA-EM-A22J 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-EM-A22L                  TCGA-EM-A22M 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-EM-A22O                  TCGA-EM-A22Q 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-EM-A2CJ                  TCGA-EM-A2CK 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-EM-A2CL                  TCGA-EM-A2CN 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-EM-A2CO                  TCGA-EM-A2CP 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-EM-A2CQ                  TCGA-EM-A2CS 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-EM-A2CU                  TCGA-EM-A2OV 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-EM-A2OY                  TCGA-EM-A2P1 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-EM-A3AI                  TCGA-EM-A3AJ 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-EM-A3AL                  TCGA-EM-A3AN 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-EM-A3AO                  TCGA-EM-A3AP 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-EM-A3FJ                  TCGA-EM-A3FL 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-EM-A3FN                  TCGA-EM-A3FO 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-EM-A3FP                  TCGA-ET-A25G 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-ET-A25L                  TCGA-ET-A25M 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-ET-A25O                  TCGA-ET-A2MY 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-ET-A2MZ                  TCGA-ET-A2N0 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-ET-A2N1                  TCGA-ET-A2N4 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-ET-A2N5                  TCGA-ET-A39I 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-ET-A39J                  TCGA-ET-A39L 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-ET-A39M                  TCGA-ET-A39N 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-ET-A39P                  TCGA-ET-A39R 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-ET-A39T                  TCGA-ET-A3BN 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-ET-A3BP                  TCGA-ET-A3BS 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-ET-A3BT                  TCGA-ET-A3BU 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-ET-A3BV                  TCGA-ET-A3BW 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-ET-A3BX                  TCGA-ET-A3DO 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-ET-A3DP                  TCGA-ET-A3DS 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-ET-A3DT                  TCGA-ET-A3DV 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-ET-A3DW                  TCGA-FE-A22Z 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-FE-A230                  TCGA-FE-A231 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-FE-A232                  TCGA-FE-A233 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-FE-A234                  TCGA-FE-A235 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-FE-A236                  TCGA-FE-A237 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-FE-A239                  TCGA-FE-A23A 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-FY-A2QD                  TCGA-FY-A3BL 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-FY-A3ON                  TCGA-GE-A2C6 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-H2-A2K9                  TCGA-IM-A3EB 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-IM-A3ED                  TCGA-J8-A3NZ 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-J8-A3O0                  TCGA-J8-A3O1 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  8(7Q34) MUTATED        2      0      0      1
  DEL PEAK  8(7Q34) WILD-TYPE    152     55    116    166
D7V5, multiclass
        clus
vv       DEL PEAK  8(7Q34) MUTATED DEL PEAK  8(7Q34) WILD-TYPE
  CLUS_1                         2                         152
  CLUS_2                         0                          55
  CLUS_3                         0                         116
  CLUS_4                         1                         166
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  8(7Q34) MUTATED        1      1      0      1
  DEL PEAK  8(7Q34) WILD-TYPE    196    127     96     70
D7V6, multiclass
        clus
vv       DEL PEAK  8(7Q34) MUTATED DEL PEAK  8(7Q34) WILD-TYPE
  CLUS_1                         1                         196
  CLUS_2                         1                         127
  CLUS_3                         0                          96
  CLUS_4                         1                          70
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(7Q34) MUTATED        2      1      1
  DEL PEAK  8(7Q34) WILD-TYPE    148    172    169
D7V7, multiclass
        clus
vv       DEL PEAK  8(7Q34) MUTATED DEL PEAK  8(7Q34) WILD-TYPE
  CLUS_1                         2                         148
  CLUS_2                         1                         172
  CLUS_3                         1                         169
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(7Q34) MUTATED        2      1      1
  DEL PEAK  8(7Q34) WILD-TYPE    153    129    207
D7V8, multiclass
        clus
vv       DEL PEAK  8(7Q34) MUTATED DEL PEAK  8(7Q34) WILD-TYPE
  CLUS_1                         2                         153
  CLUS_2                         1                         129
  CLUS_3                         1                         207
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(7Q34) MUTATED        1      2      1
  DEL PEAK  8(7Q34) WILD-TYPE    162    167    160
D7V9, multiclass
        clus
vv       DEL PEAK  8(7Q34) MUTATED DEL PEAK  8(7Q34) WILD-TYPE
  CLUS_1                         1                         162
  CLUS_2                         2                         167
  CLUS_3                         1                         160
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(7Q34) MUTATED        1      1      2
  DEL PEAK  8(7Q34) WILD-TYPE    198    127    164
D7V10, multiclass
        clus
vv       DEL PEAK  8(7Q34) MUTATED DEL PEAK  8(7Q34) WILD-TYPE
  CLUS_1                         1                         198
  CLUS_2                         1                         127
  CLUS_3                         2                         164

Clustering(8) Variable = DEL PEAK  9(8P23.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(8P23.2) MUTATED        4      0      0
  DEL PEAK  9(8P23.2) WILD-TYPE     30    383     77
D8V1, multiclass
        clus
vv       DEL PEAK  9(8P23.2) MUTATED DEL PEAK  9(8P23.2) WILD-TYPE
  CLUS_1                           4                            30
  CLUS_2                           0                           383
  CLUS_3                           0                            77
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(8P23.2) MUTATED        4      0      0
  DEL PEAK  9(8P23.2) WILD-TYPE    147     83    260
D8V2, multiclass
        clus
vv       DEL PEAK  9(8P23.2) MUTATED DEL PEAK  9(8P23.2) WILD-TYPE
  CLUS_1                           4                           147
  CLUS_2                           0                            83
  CLUS_3                           0                           260
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(8P23.2) MUTATED        1      1      0
  DEL PEAK  9(8P23.2) WILD-TYPE     60     78     81
D8V3, multiclass
[1] "Remove cluster labels:"      "DEL PEAK  9(8P23.2) MUTATED"
clus
  DEL PEAK  9(8P23.2) MUTATED DEL PEAK  9(8P23.2) WILD-TYPE 
                            2                           219 
                   TCGA-BJ-A0YZ                    TCGA-BJ-A0Z0 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-BJ-A0Z2                    TCGA-BJ-A0Z3 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-BJ-A0Z5                    TCGA-BJ-A0Z9 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-BJ-A0ZA                    TCGA-BJ-A0ZB 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-BJ-A0ZC                    TCGA-BJ-A0ZE 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-BJ-A0ZG                    TCGA-BJ-A0ZJ 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-BJ-A18Y                    TCGA-BJ-A18Z 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-BJ-A191                    TCGA-BJ-A192 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-BJ-A28R                    TCGA-BJ-A28S 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-BJ-A28T                    TCGA-BJ-A28V 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-BJ-A28W                    TCGA-BJ-A28Z 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-BJ-A290                    TCGA-BJ-A291 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-BJ-A2N7                    TCGA-BJ-A2N9 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-BJ-A2NA                    TCGA-BJ-A2P4 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-BJ-A3EZ                    TCGA-BJ-A3F0 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-CE-A13K                    TCGA-CE-A27D 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-CE-A3MD                    TCGA-CE-A3ME 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-DE-A0Y2                    TCGA-DE-A2OL 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-DE-A3KN                    TCGA-DJ-A13M 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-DJ-A13O                    TCGA-DJ-A13R 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-DJ-A13S                    TCGA-DJ-A13V 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-DJ-A13W                    TCGA-DJ-A13X 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-DJ-A1QD                    TCGA-DJ-A1QE 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-DJ-A1QF                    TCGA-DJ-A1QG 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-DJ-A1QI                    TCGA-DJ-A1QL 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-DJ-A1QM                    TCGA-DJ-A1QN 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-DJ-A1QO                    TCGA-DJ-A2PN 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-DJ-A2PO                    TCGA-DJ-A2PP 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-DJ-A2PQ                    TCGA-DJ-A2PR 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-DJ-A2PS                    TCGA-DJ-A2PU 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-DJ-A2PV                    TCGA-DJ-A2PW 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-DJ-A2PY                    TCGA-DJ-A2PZ 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-DJ-A2Q1                    TCGA-DJ-A2Q2 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-DJ-A2Q4                    TCGA-DJ-A2Q5 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-DJ-A2Q6                    TCGA-DJ-A2Q7 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-DJ-A2Q8                    TCGA-DJ-A2Q9 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-DJ-A2QA                    TCGA-DJ-A2QB 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-DJ-A2QC                    TCGA-DO-A1JZ 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-DO-A1K0                    TCGA-E3-A3DY 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-E3-A3DZ                    TCGA-E3-A3E0 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-E3-A3E1                    TCGA-E3-A3E3 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-E3-A3E5                    TCGA-E8-A2EA 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-E8-A2JQ                    TCGA-EL-A3CL 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-EL-A3CM                    TCGA-EL-A3CN 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-EL-A3CO                    TCGA-EL-A3CP 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-EL-A3CR                    TCGA-EL-A3CS 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-EL-A3CT                    TCGA-EL-A3CU 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-EL-A3CV                    TCGA-EL-A3CW 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-EL-A3CX                    TCGA-EL-A3CY 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-EL-A3CZ                    TCGA-EL-A3D0 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-EL-A3D1                    TCGA-EL-A3D4 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-EL-A3D5                    TCGA-EL-A3D6 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-EL-A3GO                    TCGA-EL-A3GP 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-EL-A3GQ                    TCGA-EL-A3GR 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-EL-A3GS                    TCGA-EL-A3GU 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-EL-A3GV                    TCGA-EL-A3GW 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-EL-A3GX                    TCGA-EL-A3GY 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-EL-A3GZ                    TCGA-EL-A3H1 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-EL-A3H2                    TCGA-EL-A3H3 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-EL-A3H4                    TCGA-EL-A3H5 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-EL-A3H7                    TCGA-EL-A3H8 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-EL-A3MW                    TCGA-EL-A3MX 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-EL-A3MY                    TCGA-EL-A3MZ 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-EL-A3N2                    TCGA-EL-A3N3 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-EM-A1CT                    TCGA-EM-A1CU 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-EM-A1CV                    TCGA-EM-A1CW 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-EM-A1YA                    TCGA-EM-A1YB 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-EM-A1YC                    TCGA-EM-A1YD 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-EM-A1YE                    TCGA-EM-A22I 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-EM-A22J                    TCGA-EM-A22L 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-EM-A22M                    TCGA-EM-A22O 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-EM-A22Q                    TCGA-EM-A2CJ 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-EM-A2CK                    TCGA-EM-A2CL 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-EM-A2CN                    TCGA-EM-A2CO 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-EM-A2CP                    TCGA-EM-A2CQ 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-EM-A2CS                    TCGA-EM-A2CU 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-EM-A2OV                    TCGA-EM-A2OY 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-EM-A2P1                    TCGA-EM-A3AI 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-EM-A3AJ                    TCGA-EM-A3AL 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-EM-A3AN                    TCGA-EM-A3AO 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-EM-A3AP                    TCGA-EM-A3FJ 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-EM-A3FL                    TCGA-EM-A3FN 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-EM-A3FO                    TCGA-EM-A3FP 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-ET-A25G                    TCGA-ET-A25L 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-ET-A25M                    TCGA-ET-A25O 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-ET-A2MY                    TCGA-ET-A2MZ 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-ET-A2N0                    TCGA-ET-A2N1 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-ET-A2N4                    TCGA-ET-A2N5 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-ET-A39I                    TCGA-ET-A39J 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-ET-A39L                    TCGA-ET-A39M 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-ET-A39N                    TCGA-ET-A39P 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-ET-A39R                    TCGA-ET-A39T 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-ET-A3BN                    TCGA-ET-A3BP 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-ET-A3BS                    TCGA-ET-A3BT 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-ET-A3BU                    TCGA-ET-A3BV 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-ET-A3BW                    TCGA-ET-A3BX 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-ET-A3DO                    TCGA-ET-A3DP 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-ET-A3DS                    TCGA-ET-A3DT 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-ET-A3DV                    TCGA-ET-A3DW 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-FE-A22Z                    TCGA-FE-A230 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-FE-A231                    TCGA-FE-A232 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-FE-A233                    TCGA-FE-A234 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-FE-A235                    TCGA-FE-A236 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-FE-A237                    TCGA-FE-A239 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-FE-A23A                    TCGA-FY-A2QD 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-FY-A3BL                    TCGA-FY-A3ON 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-GE-A2C6                    TCGA-H2-A2K9 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-IM-A3EB                    TCGA-IM-A3ED 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-J8-A3NZ                    TCGA-J8-A3O0 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-J8-A3O1 
"DEL PEAK  9(8P23.2) WILD-TYPE" 
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(8P23.2) MUTATED        1      0      1
  DEL PEAK  9(8P23.2) WILD-TYPE     30     94     95
D8V4, multiclass
[1] "Remove cluster labels:"      "DEL PEAK  9(8P23.2) MUTATED"
clus
  DEL PEAK  9(8P23.2) MUTATED DEL PEAK  9(8P23.2) WILD-TYPE 
                            2                           219 
                   TCGA-BJ-A0YZ                    TCGA-BJ-A0Z0 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-BJ-A0Z2                    TCGA-BJ-A0Z3 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-BJ-A0Z5                    TCGA-BJ-A0Z9 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-BJ-A0ZA                    TCGA-BJ-A0ZB 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-BJ-A0ZC                    TCGA-BJ-A0ZE 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-BJ-A0ZG                    TCGA-BJ-A0ZJ 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-BJ-A18Y                    TCGA-BJ-A18Z 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-BJ-A191                    TCGA-BJ-A192 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-BJ-A28R                    TCGA-BJ-A28S 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-BJ-A28T                    TCGA-BJ-A28V 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-BJ-A28W                    TCGA-BJ-A28Z 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-BJ-A290                    TCGA-BJ-A291 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-BJ-A2N7                    TCGA-BJ-A2N9 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-BJ-A2NA                    TCGA-BJ-A2P4 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-BJ-A3EZ                    TCGA-BJ-A3F0 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-CE-A13K                    TCGA-CE-A27D 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-CE-A3MD                    TCGA-CE-A3ME 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-DE-A0Y2                    TCGA-DE-A2OL 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-DE-A3KN                    TCGA-DJ-A13M 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-DJ-A13O                    TCGA-DJ-A13R 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-DJ-A13S                    TCGA-DJ-A13V 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-DJ-A13W                    TCGA-DJ-A13X 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-DJ-A1QD                    TCGA-DJ-A1QE 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-DJ-A1QF                    TCGA-DJ-A1QG 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-DJ-A1QI                    TCGA-DJ-A1QL 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-DJ-A1QM                    TCGA-DJ-A1QN 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-DJ-A1QO                    TCGA-DJ-A2PN 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-DJ-A2PO                    TCGA-DJ-A2PP 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-DJ-A2PQ                    TCGA-DJ-A2PR 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-DJ-A2PS                    TCGA-DJ-A2PU 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-DJ-A2PV                    TCGA-DJ-A2PW 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-DJ-A2PY                    TCGA-DJ-A2PZ 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-DJ-A2Q1                    TCGA-DJ-A2Q2 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-DJ-A2Q4                    TCGA-DJ-A2Q5 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-DJ-A2Q6                    TCGA-DJ-A2Q7 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-DJ-A2Q8                    TCGA-DJ-A2Q9 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-DJ-A2QA                    TCGA-DJ-A2QB 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-DJ-A2QC                    TCGA-DO-A1JZ 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-DO-A1K0                    TCGA-E3-A3DY 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-E3-A3DZ                    TCGA-E3-A3E0 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-E3-A3E1                    TCGA-E3-A3E3 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-E3-A3E5                    TCGA-E8-A2EA 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-E8-A2JQ                    TCGA-EL-A3CL 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-EL-A3CM                    TCGA-EL-A3CN 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-EL-A3CO                    TCGA-EL-A3CP 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-EL-A3CR                    TCGA-EL-A3CS 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-EL-A3CT                    TCGA-EL-A3CU 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-EL-A3CV                    TCGA-EL-A3CW 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-EL-A3CX                    TCGA-EL-A3CY 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-EL-A3CZ                    TCGA-EL-A3D0 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-EL-A3D1                    TCGA-EL-A3D4 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-EL-A3D5                    TCGA-EL-A3D6 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-EL-A3GO                    TCGA-EL-A3GP 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-EL-A3GQ                    TCGA-EL-A3GR 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-EL-A3GS                    TCGA-EL-A3GU 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-EL-A3GV                    TCGA-EL-A3GW 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-EL-A3GX                    TCGA-EL-A3GY 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-EL-A3GZ                    TCGA-EL-A3H1 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-EL-A3H2                    TCGA-EL-A3H3 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-EL-A3H4                    TCGA-EL-A3H5 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-EL-A3H7                    TCGA-EL-A3H8 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-EL-A3MW                    TCGA-EL-A3MX 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-EL-A3MY                    TCGA-EL-A3MZ 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-EL-A3N2                    TCGA-EL-A3N3 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-EM-A1CT                    TCGA-EM-A1CU 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-EM-A1CV                    TCGA-EM-A1CW 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-EM-A1YA                    TCGA-EM-A1YB 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-EM-A1YC                    TCGA-EM-A1YD 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-EM-A1YE                    TCGA-EM-A22I 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-EM-A22J                    TCGA-EM-A22L 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-EM-A22M                    TCGA-EM-A22O 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-EM-A22Q                    TCGA-EM-A2CJ 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-EM-A2CK                    TCGA-EM-A2CL 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-EM-A2CN                    TCGA-EM-A2CO 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-EM-A2CP                    TCGA-EM-A2CQ 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-EM-A2CS                    TCGA-EM-A2CU 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-EM-A2OV                    TCGA-EM-A2OY 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-EM-A2P1                    TCGA-EM-A3AI 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-EM-A3AJ                    TCGA-EM-A3AL 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-EM-A3AN                    TCGA-EM-A3AO 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-EM-A3AP                    TCGA-EM-A3FJ 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-EM-A3FL                    TCGA-EM-A3FN 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-EM-A3FO                    TCGA-EM-A3FP 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-ET-A25G                    TCGA-ET-A25L 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-ET-A25M                    TCGA-ET-A25O 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-ET-A2MY                    TCGA-ET-A2MZ 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-ET-A2N0                    TCGA-ET-A2N1 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-ET-A2N4                    TCGA-ET-A2N5 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-ET-A39I                    TCGA-ET-A39J 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-ET-A39L                    TCGA-ET-A39M 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-ET-A39N                    TCGA-ET-A39P 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-ET-A39R                    TCGA-ET-A39T 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-ET-A3BN                    TCGA-ET-A3BP 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-ET-A3BS                    TCGA-ET-A3BT 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-ET-A3BU                    TCGA-ET-A3BV 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-ET-A3BW                    TCGA-ET-A3BX 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-ET-A3DO                    TCGA-ET-A3DP 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-ET-A3DS                    TCGA-ET-A3DT 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-ET-A3DV                    TCGA-ET-A3DW 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-FE-A22Z                    TCGA-FE-A230 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-FE-A231                    TCGA-FE-A232 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-FE-A233                    TCGA-FE-A234 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-FE-A235                    TCGA-FE-A236 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-FE-A237                    TCGA-FE-A239 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-FE-A23A                    TCGA-FY-A2QD 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-FY-A3BL                    TCGA-FY-A3ON 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-GE-A2C6                    TCGA-H2-A2K9 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-IM-A3EB                    TCGA-IM-A3ED 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-J8-A3NZ                    TCGA-J8-A3O0 
"DEL PEAK  9(8P23.2) WILD-TYPE" "DEL PEAK  9(8P23.2) WILD-TYPE" 
                   TCGA-J8-A3O1 
"DEL PEAK  9(8P23.2) WILD-TYPE" 
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  9(8P23.2) MUTATED        4      0      0      0
  DEL PEAK  9(8P23.2) WILD-TYPE    150     55    116    167
D8V5, multiclass
        clus
vv       DEL PEAK  9(8P23.2) MUTATED DEL PEAK  9(8P23.2) WILD-TYPE
  CLUS_1                           4                           150
  CLUS_2                           0                            55
  CLUS_3                           0                           116
  CLUS_4                           0                           167
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  9(8P23.2) MUTATED        0      4      0      0
  DEL PEAK  9(8P23.2) WILD-TYPE    197    124     96     71
D8V6, multiclass
        clus
vv       DEL PEAK  9(8P23.2) MUTATED DEL PEAK  9(8P23.2) WILD-TYPE
  CLUS_1                           0                           197
  CLUS_2                           4                           124
  CLUS_3                           0                            96
  CLUS_4                           0                            71
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(8P23.2) MUTATED        4      0      0
  DEL PEAK  9(8P23.2) WILD-TYPE    146    173    170
D8V7, multiclass
        clus
vv       DEL PEAK  9(8P23.2) MUTATED DEL PEAK  9(8P23.2) WILD-TYPE
  CLUS_1                           4                           146
  CLUS_2                           0                           173
  CLUS_3                           0                           170
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(8P23.2) MUTATED        0      4      0
  DEL PEAK  9(8P23.2) WILD-TYPE    155    126    208
D8V8, multiclass
        clus
vv       DEL PEAK  9(8P23.2) MUTATED DEL PEAK  9(8P23.2) WILD-TYPE
  CLUS_1                           0                           155
  CLUS_2                           4                           126
  CLUS_3                           0                           208
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(8P23.2) MUTATED        4      0      0
  DEL PEAK  9(8P23.2) WILD-TYPE    159    169    161
D8V9, multiclass
        clus
vv       DEL PEAK  9(8P23.2) MUTATED DEL PEAK  9(8P23.2) WILD-TYPE
  CLUS_1                           4                           159
  CLUS_2                           0                           169
  CLUS_3                           0                           161
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(8P23.2) MUTATED        0      4      0
  DEL PEAK  9(8P23.2) WILD-TYPE    199    124    166
D8V10, multiclass
        clus
vv       DEL PEAK  9(8P23.2) MUTATED DEL PEAK  9(8P23.2) WILD-TYPE
  CLUS_1                           0                           199
  CLUS_2                           4                           124
  CLUS_3                           0                           166

Clustering(9) Variable = DEL PEAK 10(8P22) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(8P22) MUTATED        4      0      0
  DEL PEAK 10(8P22) WILD-TYPE     30    383     77
D9V1, multiclass
        clus
vv       DEL PEAK 10(8P22) MUTATED DEL PEAK 10(8P22) WILD-TYPE
  CLUS_1                         4                          30
  CLUS_2                         0                         383
  CLUS_3                         0                          77
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(8P22) MUTATED        4      0      0
  DEL PEAK 10(8P22) WILD-TYPE    147     83    260
D9V2, multiclass
        clus
vv       DEL PEAK 10(8P22) MUTATED DEL PEAK 10(8P22) WILD-TYPE
  CLUS_1                         4                         147
  CLUS_2                         0                          83
  CLUS_3                         0                         260
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(8P22) MUTATED        1      1      0
  DEL PEAK 10(8P22) WILD-TYPE     60     78     81
D9V3, multiclass
[1] "Remove cluster labels:"    "DEL PEAK 10(8P22) MUTATED"
clus
  DEL PEAK 10(8P22) MUTATED DEL PEAK 10(8P22) WILD-TYPE 
                          2                         219 
                 TCGA-BJ-A0YZ                  TCGA-BJ-A0Z0 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-BJ-A0Z2                  TCGA-BJ-A0Z3 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-BJ-A0Z5                  TCGA-BJ-A0Z9 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-BJ-A0ZA                  TCGA-BJ-A0ZB 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-BJ-A0ZC                  TCGA-BJ-A0ZE 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-BJ-A0ZG                  TCGA-BJ-A0ZJ 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-BJ-A18Y                  TCGA-BJ-A18Z 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-BJ-A191                  TCGA-BJ-A192 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-BJ-A28R                  TCGA-BJ-A28S 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-BJ-A28T                  TCGA-BJ-A28V 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-BJ-A28W                  TCGA-BJ-A28Z 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-BJ-A290                  TCGA-BJ-A291 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-BJ-A2N7                  TCGA-BJ-A2N9 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-BJ-A2NA                  TCGA-BJ-A2P4 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-BJ-A3EZ                  TCGA-BJ-A3F0 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-CE-A13K                  TCGA-CE-A27D 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-CE-A3MD                  TCGA-CE-A3ME 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-DE-A0Y2                  TCGA-DE-A2OL 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-DE-A3KN                  TCGA-DJ-A13M 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-DJ-A13O                  TCGA-DJ-A13R 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-DJ-A13S                  TCGA-DJ-A13V 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-DJ-A13W                  TCGA-DJ-A13X 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-DJ-A1QD                  TCGA-DJ-A1QE 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-DJ-A1QF                  TCGA-DJ-A1QG 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-DJ-A1QI                  TCGA-DJ-A1QL 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-DJ-A1QM                  TCGA-DJ-A1QN 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-DJ-A1QO                  TCGA-DJ-A2PN 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-DJ-A2PO                  TCGA-DJ-A2PP 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-DJ-A2PQ                  TCGA-DJ-A2PR 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-DJ-A2PS                  TCGA-DJ-A2PU 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-DJ-A2PV                  TCGA-DJ-A2PW 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-DJ-A2PY                  TCGA-DJ-A2PZ 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-DJ-A2Q1                  TCGA-DJ-A2Q2 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-DJ-A2Q4                  TCGA-DJ-A2Q5 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-DJ-A2Q6                  TCGA-DJ-A2Q7 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-DJ-A2Q8                  TCGA-DJ-A2Q9 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-DJ-A2QA                  TCGA-DJ-A2QB 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-DJ-A2QC                  TCGA-DO-A1JZ 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-DO-A1K0                  TCGA-E3-A3DY 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-E3-A3DZ                  TCGA-E3-A3E0 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-E3-A3E1                  TCGA-E3-A3E3 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-E3-A3E5                  TCGA-E8-A2EA 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-E8-A2JQ                  TCGA-EL-A3CL 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-EL-A3CM                  TCGA-EL-A3CN 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-EL-A3CO                  TCGA-EL-A3CP 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-EL-A3CR                  TCGA-EL-A3CS 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-EL-A3CT                  TCGA-EL-A3CU 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-EL-A3CV                  TCGA-EL-A3CW 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-EL-A3CX                  TCGA-EL-A3CY 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-EL-A3CZ                  TCGA-EL-A3D0 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-EL-A3D1                  TCGA-EL-A3D4 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-EL-A3D5                  TCGA-EL-A3D6 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-EL-A3GO                  TCGA-EL-A3GP 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-EL-A3GQ                  TCGA-EL-A3GR 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-EL-A3GS                  TCGA-EL-A3GU 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-EL-A3GV                  TCGA-EL-A3GW 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-EL-A3GX                  TCGA-EL-A3GY 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-EL-A3GZ                  TCGA-EL-A3H1 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-EL-A3H2                  TCGA-EL-A3H3 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-EL-A3H4                  TCGA-EL-A3H5 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-EL-A3H7                  TCGA-EL-A3H8 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-EL-A3MW                  TCGA-EL-A3MX 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-EL-A3MY                  TCGA-EL-A3MZ 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-EL-A3N2                  TCGA-EL-A3N3 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-EM-A1CT                  TCGA-EM-A1CU 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-EM-A1CV                  TCGA-EM-A1CW 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-EM-A1YA                  TCGA-EM-A1YB 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-EM-A1YC                  TCGA-EM-A1YD 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-EM-A1YE                  TCGA-EM-A22I 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-EM-A22J                  TCGA-EM-A22L 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-EM-A22M                  TCGA-EM-A22O 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-EM-A22Q                  TCGA-EM-A2CJ 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-EM-A2CK                  TCGA-EM-A2CL 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-EM-A2CN                  TCGA-EM-A2CO 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-EM-A2CP                  TCGA-EM-A2CQ 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-EM-A2CS                  TCGA-EM-A2CU 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-EM-A2OV                  TCGA-EM-A2OY 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-EM-A2P1                  TCGA-EM-A3AI 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-EM-A3AJ                  TCGA-EM-A3AL 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-EM-A3AN                  TCGA-EM-A3AO 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-EM-A3AP                  TCGA-EM-A3FJ 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-EM-A3FL                  TCGA-EM-A3FN 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-EM-A3FO                  TCGA-EM-A3FP 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-ET-A25G                  TCGA-ET-A25L 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-ET-A25M                  TCGA-ET-A25O 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-ET-A2MY                  TCGA-ET-A2MZ 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-ET-A2N0                  TCGA-ET-A2N1 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-ET-A2N4                  TCGA-ET-A2N5 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-ET-A39I                  TCGA-ET-A39J 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-ET-A39L                  TCGA-ET-A39M 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-ET-A39N                  TCGA-ET-A39P 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-ET-A39R                  TCGA-ET-A39T 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-ET-A3BN                  TCGA-ET-A3BP 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-ET-A3BS                  TCGA-ET-A3BT 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-ET-A3BU                  TCGA-ET-A3BV 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-ET-A3BW                  TCGA-ET-A3BX 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-ET-A3DO                  TCGA-ET-A3DP 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-ET-A3DS                  TCGA-ET-A3DT 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-ET-A3DV                  TCGA-ET-A3DW 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-FE-A22Z                  TCGA-FE-A230 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-FE-A231                  TCGA-FE-A232 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-FE-A233                  TCGA-FE-A234 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-FE-A235                  TCGA-FE-A236 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-FE-A237                  TCGA-FE-A239 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-FE-A23A                  TCGA-FY-A2QD 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-FY-A3BL                  TCGA-FY-A3ON 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-GE-A2C6                  TCGA-H2-A2K9 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-IM-A3EB                  TCGA-IM-A3ED 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-J8-A3NZ                  TCGA-J8-A3O0 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-J8-A3O1 
"DEL PEAK 10(8P22) WILD-TYPE" 
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(8P22) MUTATED        1      0      1
  DEL PEAK 10(8P22) WILD-TYPE     30     94     95
D9V4, multiclass
[1] "Remove cluster labels:"    "DEL PEAK 10(8P22) MUTATED"
clus
  DEL PEAK 10(8P22) MUTATED DEL PEAK 10(8P22) WILD-TYPE 
                          2                         219 
                 TCGA-BJ-A0YZ                  TCGA-BJ-A0Z0 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-BJ-A0Z2                  TCGA-BJ-A0Z3 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-BJ-A0Z5                  TCGA-BJ-A0Z9 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-BJ-A0ZA                  TCGA-BJ-A0ZB 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-BJ-A0ZC                  TCGA-BJ-A0ZE 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-BJ-A0ZG                  TCGA-BJ-A0ZJ 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-BJ-A18Y                  TCGA-BJ-A18Z 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-BJ-A191                  TCGA-BJ-A192 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-BJ-A28R                  TCGA-BJ-A28S 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-BJ-A28T                  TCGA-BJ-A28V 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-BJ-A28W                  TCGA-BJ-A28Z 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-BJ-A290                  TCGA-BJ-A291 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-BJ-A2N7                  TCGA-BJ-A2N9 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-BJ-A2NA                  TCGA-BJ-A2P4 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-BJ-A3EZ                  TCGA-BJ-A3F0 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-CE-A13K                  TCGA-CE-A27D 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-CE-A3MD                  TCGA-CE-A3ME 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-DE-A0Y2                  TCGA-DE-A2OL 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-DE-A3KN                  TCGA-DJ-A13M 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-DJ-A13O                  TCGA-DJ-A13R 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-DJ-A13S                  TCGA-DJ-A13V 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-DJ-A13W                  TCGA-DJ-A13X 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-DJ-A1QD                  TCGA-DJ-A1QE 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-DJ-A1QF                  TCGA-DJ-A1QG 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-DJ-A1QI                  TCGA-DJ-A1QL 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-DJ-A1QM                  TCGA-DJ-A1QN 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-DJ-A1QO                  TCGA-DJ-A2PN 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-DJ-A2PO                  TCGA-DJ-A2PP 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-DJ-A2PQ                  TCGA-DJ-A2PR 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-DJ-A2PS                  TCGA-DJ-A2PU 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-DJ-A2PV                  TCGA-DJ-A2PW 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-DJ-A2PY                  TCGA-DJ-A2PZ 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-DJ-A2Q1                  TCGA-DJ-A2Q2 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-DJ-A2Q4                  TCGA-DJ-A2Q5 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-DJ-A2Q6                  TCGA-DJ-A2Q7 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-DJ-A2Q8                  TCGA-DJ-A2Q9 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-DJ-A2QA                  TCGA-DJ-A2QB 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-DJ-A2QC                  TCGA-DO-A1JZ 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-DO-A1K0                  TCGA-E3-A3DY 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-E3-A3DZ                  TCGA-E3-A3E0 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-E3-A3E1                  TCGA-E3-A3E3 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-E3-A3E5                  TCGA-E8-A2EA 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-E8-A2JQ                  TCGA-EL-A3CL 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-EL-A3CM                  TCGA-EL-A3CN 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-EL-A3CO                  TCGA-EL-A3CP 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-EL-A3CR                  TCGA-EL-A3CS 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-EL-A3CT                  TCGA-EL-A3CU 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-EL-A3CV                  TCGA-EL-A3CW 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-EL-A3CX                  TCGA-EL-A3CY 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-EL-A3CZ                  TCGA-EL-A3D0 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-EL-A3D1                  TCGA-EL-A3D4 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-EL-A3D5                  TCGA-EL-A3D6 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-EL-A3GO                  TCGA-EL-A3GP 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-EL-A3GQ                  TCGA-EL-A3GR 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-EL-A3GS                  TCGA-EL-A3GU 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-EL-A3GV                  TCGA-EL-A3GW 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-EL-A3GX                  TCGA-EL-A3GY 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-EL-A3GZ                  TCGA-EL-A3H1 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-EL-A3H2                  TCGA-EL-A3H3 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-EL-A3H4                  TCGA-EL-A3H5 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-EL-A3H7                  TCGA-EL-A3H8 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-EL-A3MW                  TCGA-EL-A3MX 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-EL-A3MY                  TCGA-EL-A3MZ 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-EL-A3N2                  TCGA-EL-A3N3 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-EM-A1CT                  TCGA-EM-A1CU 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-EM-A1CV                  TCGA-EM-A1CW 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-EM-A1YA                  TCGA-EM-A1YB 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-EM-A1YC                  TCGA-EM-A1YD 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-EM-A1YE                  TCGA-EM-A22I 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-EM-A22J                  TCGA-EM-A22L 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-EM-A22M                  TCGA-EM-A22O 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-EM-A22Q                  TCGA-EM-A2CJ 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-EM-A2CK                  TCGA-EM-A2CL 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-EM-A2CN                  TCGA-EM-A2CO 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-EM-A2CP                  TCGA-EM-A2CQ 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-EM-A2CS                  TCGA-EM-A2CU 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-EM-A2OV                  TCGA-EM-A2OY 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-EM-A2P1                  TCGA-EM-A3AI 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-EM-A3AJ                  TCGA-EM-A3AL 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-EM-A3AN                  TCGA-EM-A3AO 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-EM-A3AP                  TCGA-EM-A3FJ 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-EM-A3FL                  TCGA-EM-A3FN 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-EM-A3FO                  TCGA-EM-A3FP 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-ET-A25G                  TCGA-ET-A25L 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-ET-A25M                  TCGA-ET-A25O 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-ET-A2MY                  TCGA-ET-A2MZ 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-ET-A2N0                  TCGA-ET-A2N1 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-ET-A2N4                  TCGA-ET-A2N5 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-ET-A39I                  TCGA-ET-A39J 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-ET-A39L                  TCGA-ET-A39M 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-ET-A39N                  TCGA-ET-A39P 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-ET-A39R                  TCGA-ET-A39T 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-ET-A3BN                  TCGA-ET-A3BP 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-ET-A3BS                  TCGA-ET-A3BT 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-ET-A3BU                  TCGA-ET-A3BV 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-ET-A3BW                  TCGA-ET-A3BX 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-ET-A3DO                  TCGA-ET-A3DP 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-ET-A3DS                  TCGA-ET-A3DT 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-ET-A3DV                  TCGA-ET-A3DW 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-FE-A22Z                  TCGA-FE-A230 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-FE-A231                  TCGA-FE-A232 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-FE-A233                  TCGA-FE-A234 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-FE-A235                  TCGA-FE-A236 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-FE-A237                  TCGA-FE-A239 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-FE-A23A                  TCGA-FY-A2QD 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-FY-A3BL                  TCGA-FY-A3ON 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-GE-A2C6                  TCGA-H2-A2K9 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-IM-A3EB                  TCGA-IM-A3ED 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-J8-A3NZ                  TCGA-J8-A3O0 
"DEL PEAK 10(8P22) WILD-TYPE" "DEL PEAK 10(8P22) WILD-TYPE" 
                 TCGA-J8-A3O1 
"DEL PEAK 10(8P22) WILD-TYPE" 
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 10(8P22) MUTATED        4      0      0      0
  DEL PEAK 10(8P22) WILD-TYPE    150     55    116    167
D9V5, multiclass
        clus
vv       DEL PEAK 10(8P22) MUTATED DEL PEAK 10(8P22) WILD-TYPE
  CLUS_1                         4                         150
  CLUS_2                         0                          55
  CLUS_3                         0                         116
  CLUS_4                         0                         167
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 10(8P22) MUTATED        0      4      0      0
  DEL PEAK 10(8P22) WILD-TYPE    197    124     96     71
D9V6, multiclass
        clus
vv       DEL PEAK 10(8P22) MUTATED DEL PEAK 10(8P22) WILD-TYPE
  CLUS_1                         0                         197
  CLUS_2                         4                         124
  CLUS_3                         0                          96
  CLUS_4                         0                          71
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(8P22) MUTATED        4      0      0
  DEL PEAK 10(8P22) WILD-TYPE    146    173    170
D9V7, multiclass
        clus
vv       DEL PEAK 10(8P22) MUTATED DEL PEAK 10(8P22) WILD-TYPE
  CLUS_1                         4                         146
  CLUS_2                         0                         173
  CLUS_3                         0                         170
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(8P22) MUTATED        0      4      0
  DEL PEAK 10(8P22) WILD-TYPE    155    126    208
D9V8, multiclass
        clus
vv       DEL PEAK 10(8P22) MUTATED DEL PEAK 10(8P22) WILD-TYPE
  CLUS_1                         0                         155
  CLUS_2                         4                         126
  CLUS_3                         0                         208
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(8P22) MUTATED        4      0      0
  DEL PEAK 10(8P22) WILD-TYPE    159    169    161
D9V9, multiclass
        clus
vv       DEL PEAK 10(8P22) MUTATED DEL PEAK 10(8P22) WILD-TYPE
  CLUS_1                         4                         159
  CLUS_2                         0                         169
  CLUS_3                         0                         161
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(8P22) MUTATED        0      4      0
  DEL PEAK 10(8P22) WILD-TYPE    199    124    166
D9V10, multiclass
        clus
vv       DEL PEAK 10(8P22) MUTATED DEL PEAK 10(8P22) WILD-TYPE
  CLUS_1                         0                         199
  CLUS_2                         4                         124
  CLUS_3                         0                         166

Clustering(10) Variable = DEL PEAK 11(8P12) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(8P12) MUTATED        4      0      0
  DEL PEAK 11(8P12) WILD-TYPE     30    383     77
D10V1, multiclass
        clus
vv       DEL PEAK 11(8P12) MUTATED DEL PEAK 11(8P12) WILD-TYPE
  CLUS_1                         4                          30
  CLUS_2                         0                         383
  CLUS_3                         0                          77
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(8P12) MUTATED        4      0      0
  DEL PEAK 11(8P12) WILD-TYPE    147     83    260
D10V2, multiclass
        clus
vv       DEL PEAK 11(8P12) MUTATED DEL PEAK 11(8P12) WILD-TYPE
  CLUS_1                         4                         147
  CLUS_2                         0                          83
  CLUS_3                         0                         260
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(8P12) MUTATED        1      1      0
  DEL PEAK 11(8P12) WILD-TYPE     60     78     81
D10V3, multiclass
[1] "Remove cluster labels:"    "DEL PEAK 11(8P12) MUTATED"
clus
  DEL PEAK 11(8P12) MUTATED DEL PEAK 11(8P12) WILD-TYPE 
                          2                         219 
                 TCGA-BJ-A0YZ                  TCGA-BJ-A0Z0 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-BJ-A0Z2                  TCGA-BJ-A0Z3 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-BJ-A0Z5                  TCGA-BJ-A0Z9 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-BJ-A0ZA                  TCGA-BJ-A0ZB 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-BJ-A0ZC                  TCGA-BJ-A0ZE 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-BJ-A0ZG                  TCGA-BJ-A0ZJ 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-BJ-A18Y                  TCGA-BJ-A18Z 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-BJ-A191                  TCGA-BJ-A192 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-BJ-A28R                  TCGA-BJ-A28S 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-BJ-A28T                  TCGA-BJ-A28V 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-BJ-A28W                  TCGA-BJ-A28Z 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-BJ-A290                  TCGA-BJ-A291 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-BJ-A2N7                  TCGA-BJ-A2N9 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-BJ-A2NA                  TCGA-BJ-A2P4 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-BJ-A3EZ                  TCGA-BJ-A3F0 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-CE-A13K                  TCGA-CE-A27D 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-CE-A3MD                  TCGA-CE-A3ME 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-DE-A0Y2                  TCGA-DE-A2OL 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-DE-A3KN                  TCGA-DJ-A13M 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-DJ-A13O                  TCGA-DJ-A13R 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-DJ-A13S                  TCGA-DJ-A13V 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-DJ-A13W                  TCGA-DJ-A13X 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-DJ-A1QD                  TCGA-DJ-A1QE 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-DJ-A1QF                  TCGA-DJ-A1QG 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-DJ-A1QI                  TCGA-DJ-A1QL 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-DJ-A1QM                  TCGA-DJ-A1QN 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-DJ-A1QO                  TCGA-DJ-A2PN 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-DJ-A2PO                  TCGA-DJ-A2PP 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-DJ-A2PQ                  TCGA-DJ-A2PR 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-DJ-A2PS                  TCGA-DJ-A2PU 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-DJ-A2PV                  TCGA-DJ-A2PW 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-DJ-A2PY                  TCGA-DJ-A2PZ 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-DJ-A2Q1                  TCGA-DJ-A2Q2 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-DJ-A2Q4                  TCGA-DJ-A2Q5 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-DJ-A2Q6                  TCGA-DJ-A2Q7 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-DJ-A2Q8                  TCGA-DJ-A2Q9 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-DJ-A2QA                  TCGA-DJ-A2QB 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-DJ-A2QC                  TCGA-DO-A1JZ 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-DO-A1K0                  TCGA-E3-A3DY 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-E3-A3DZ                  TCGA-E3-A3E0 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-E3-A3E1                  TCGA-E3-A3E3 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-E3-A3E5                  TCGA-E8-A2EA 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-E8-A2JQ                  TCGA-EL-A3CL 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-EL-A3CM                  TCGA-EL-A3CN 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-EL-A3CO                  TCGA-EL-A3CP 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-EL-A3CR                  TCGA-EL-A3CS 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-EL-A3CT                  TCGA-EL-A3CU 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-EL-A3CV                  TCGA-EL-A3CW 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-EL-A3CX                  TCGA-EL-A3CY 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-EL-A3CZ                  TCGA-EL-A3D0 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-EL-A3D1                  TCGA-EL-A3D4 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-EL-A3D5                  TCGA-EL-A3D6 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-EL-A3GO                  TCGA-EL-A3GP 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-EL-A3GQ                  TCGA-EL-A3GR 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-EL-A3GS                  TCGA-EL-A3GU 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-EL-A3GV                  TCGA-EL-A3GW 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-EL-A3GX                  TCGA-EL-A3GY 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-EL-A3GZ                  TCGA-EL-A3H1 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-EL-A3H2                  TCGA-EL-A3H3 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-EL-A3H4                  TCGA-EL-A3H5 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-EL-A3H7                  TCGA-EL-A3H8 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-EL-A3MW                  TCGA-EL-A3MX 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-EL-A3MY                  TCGA-EL-A3MZ 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-EL-A3N2                  TCGA-EL-A3N3 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-EM-A1CT                  TCGA-EM-A1CU 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-EM-A1CV                  TCGA-EM-A1CW 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-EM-A1YA                  TCGA-EM-A1YB 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-EM-A1YC                  TCGA-EM-A1YD 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-EM-A1YE                  TCGA-EM-A22I 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-EM-A22J                  TCGA-EM-A22L 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-EM-A22M                  TCGA-EM-A22O 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-EM-A22Q                  TCGA-EM-A2CJ 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-EM-A2CK                  TCGA-EM-A2CL 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-EM-A2CN                  TCGA-EM-A2CO 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-EM-A2CP                  TCGA-EM-A2CQ 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-EM-A2CS                  TCGA-EM-A2CU 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-EM-A2OV                  TCGA-EM-A2OY 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-EM-A2P1                  TCGA-EM-A3AI 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-EM-A3AJ                  TCGA-EM-A3AL 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-EM-A3AN                  TCGA-EM-A3AO 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-EM-A3AP                  TCGA-EM-A3FJ 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-EM-A3FL                  TCGA-EM-A3FN 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-EM-A3FO                  TCGA-EM-A3FP 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-ET-A25G                  TCGA-ET-A25L 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-ET-A25M                  TCGA-ET-A25O 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-ET-A2MY                  TCGA-ET-A2MZ 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-ET-A2N0                  TCGA-ET-A2N1 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-ET-A2N4                  TCGA-ET-A2N5 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-ET-A39I                  TCGA-ET-A39J 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-ET-A39L                  TCGA-ET-A39M 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-ET-A39N                  TCGA-ET-A39P 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-ET-A39R                  TCGA-ET-A39T 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-ET-A3BN                  TCGA-ET-A3BP 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-ET-A3BS                  TCGA-ET-A3BT 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-ET-A3BU                  TCGA-ET-A3BV 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-ET-A3BW                  TCGA-ET-A3BX 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-ET-A3DO                  TCGA-ET-A3DP 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-ET-A3DS                  TCGA-ET-A3DT 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-ET-A3DV                  TCGA-ET-A3DW 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-FE-A22Z                  TCGA-FE-A230 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-FE-A231                  TCGA-FE-A232 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-FE-A233                  TCGA-FE-A234 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-FE-A235                  TCGA-FE-A236 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-FE-A237                  TCGA-FE-A239 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-FE-A23A                  TCGA-FY-A2QD 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-FY-A3BL                  TCGA-FY-A3ON 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-GE-A2C6                  TCGA-H2-A2K9 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-IM-A3EB                  TCGA-IM-A3ED 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-J8-A3NZ                  TCGA-J8-A3O0 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-J8-A3O1 
"DEL PEAK 11(8P12) WILD-TYPE" 
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(8P12) MUTATED        1      0      1
  DEL PEAK 11(8P12) WILD-TYPE     30     94     95
D10V4, multiclass
[1] "Remove cluster labels:"    "DEL PEAK 11(8P12) MUTATED"
clus
  DEL PEAK 11(8P12) MUTATED DEL PEAK 11(8P12) WILD-TYPE 
                          2                         219 
                 TCGA-BJ-A0YZ                  TCGA-BJ-A0Z0 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-BJ-A0Z2                  TCGA-BJ-A0Z3 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-BJ-A0Z5                  TCGA-BJ-A0Z9 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-BJ-A0ZA                  TCGA-BJ-A0ZB 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-BJ-A0ZC                  TCGA-BJ-A0ZE 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-BJ-A0ZG                  TCGA-BJ-A0ZJ 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-BJ-A18Y                  TCGA-BJ-A18Z 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-BJ-A191                  TCGA-BJ-A192 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-BJ-A28R                  TCGA-BJ-A28S 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-BJ-A28T                  TCGA-BJ-A28V 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-BJ-A28W                  TCGA-BJ-A28Z 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-BJ-A290                  TCGA-BJ-A291 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-BJ-A2N7                  TCGA-BJ-A2N9 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-BJ-A2NA                  TCGA-BJ-A2P4 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-BJ-A3EZ                  TCGA-BJ-A3F0 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-CE-A13K                  TCGA-CE-A27D 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-CE-A3MD                  TCGA-CE-A3ME 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-DE-A0Y2                  TCGA-DE-A2OL 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-DE-A3KN                  TCGA-DJ-A13M 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-DJ-A13O                  TCGA-DJ-A13R 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-DJ-A13S                  TCGA-DJ-A13V 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-DJ-A13W                  TCGA-DJ-A13X 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-DJ-A1QD                  TCGA-DJ-A1QE 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-DJ-A1QF                  TCGA-DJ-A1QG 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-DJ-A1QI                  TCGA-DJ-A1QL 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-DJ-A1QM                  TCGA-DJ-A1QN 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-DJ-A1QO                  TCGA-DJ-A2PN 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-DJ-A2PO                  TCGA-DJ-A2PP 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-DJ-A2PQ                  TCGA-DJ-A2PR 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-DJ-A2PS                  TCGA-DJ-A2PU 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-DJ-A2PV                  TCGA-DJ-A2PW 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-DJ-A2PY                  TCGA-DJ-A2PZ 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-DJ-A2Q1                  TCGA-DJ-A2Q2 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-DJ-A2Q4                  TCGA-DJ-A2Q5 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-DJ-A2Q6                  TCGA-DJ-A2Q7 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-DJ-A2Q8                  TCGA-DJ-A2Q9 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-DJ-A2QA                  TCGA-DJ-A2QB 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-DJ-A2QC                  TCGA-DO-A1JZ 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-DO-A1K0                  TCGA-E3-A3DY 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-E3-A3DZ                  TCGA-E3-A3E0 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-E3-A3E1                  TCGA-E3-A3E3 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-E3-A3E5                  TCGA-E8-A2EA 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-E8-A2JQ                  TCGA-EL-A3CL 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-EL-A3CM                  TCGA-EL-A3CN 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-EL-A3CO                  TCGA-EL-A3CP 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-EL-A3CR                  TCGA-EL-A3CS 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-EL-A3CT                  TCGA-EL-A3CU 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-EL-A3CV                  TCGA-EL-A3CW 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-EL-A3CX                  TCGA-EL-A3CY 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-EL-A3CZ                  TCGA-EL-A3D0 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-EL-A3D1                  TCGA-EL-A3D4 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-EL-A3D5                  TCGA-EL-A3D6 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-EL-A3GO                  TCGA-EL-A3GP 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-EL-A3GQ                  TCGA-EL-A3GR 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-EL-A3GS                  TCGA-EL-A3GU 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-EL-A3GV                  TCGA-EL-A3GW 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-EL-A3GX                  TCGA-EL-A3GY 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-EL-A3GZ                  TCGA-EL-A3H1 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-EL-A3H2                  TCGA-EL-A3H3 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-EL-A3H4                  TCGA-EL-A3H5 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-EL-A3H7                  TCGA-EL-A3H8 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-EL-A3MW                  TCGA-EL-A3MX 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-EL-A3MY                  TCGA-EL-A3MZ 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-EL-A3N2                  TCGA-EL-A3N3 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-EM-A1CT                  TCGA-EM-A1CU 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-EM-A1CV                  TCGA-EM-A1CW 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-EM-A1YA                  TCGA-EM-A1YB 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-EM-A1YC                  TCGA-EM-A1YD 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-EM-A1YE                  TCGA-EM-A22I 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-EM-A22J                  TCGA-EM-A22L 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-EM-A22M                  TCGA-EM-A22O 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-EM-A22Q                  TCGA-EM-A2CJ 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-EM-A2CK                  TCGA-EM-A2CL 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-EM-A2CN                  TCGA-EM-A2CO 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-EM-A2CP                  TCGA-EM-A2CQ 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-EM-A2CS                  TCGA-EM-A2CU 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-EM-A2OV                  TCGA-EM-A2OY 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-EM-A2P1                  TCGA-EM-A3AI 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-EM-A3AJ                  TCGA-EM-A3AL 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-EM-A3AN                  TCGA-EM-A3AO 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-EM-A3AP                  TCGA-EM-A3FJ 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-EM-A3FL                  TCGA-EM-A3FN 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-EM-A3FO                  TCGA-EM-A3FP 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-ET-A25G                  TCGA-ET-A25L 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-ET-A25M                  TCGA-ET-A25O 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-ET-A2MY                  TCGA-ET-A2MZ 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-ET-A2N0                  TCGA-ET-A2N1 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-ET-A2N4                  TCGA-ET-A2N5 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-ET-A39I                  TCGA-ET-A39J 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-ET-A39L                  TCGA-ET-A39M 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-ET-A39N                  TCGA-ET-A39P 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-ET-A39R                  TCGA-ET-A39T 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-ET-A3BN                  TCGA-ET-A3BP 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-ET-A3BS                  TCGA-ET-A3BT 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-ET-A3BU                  TCGA-ET-A3BV 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-ET-A3BW                  TCGA-ET-A3BX 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-ET-A3DO                  TCGA-ET-A3DP 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-ET-A3DS                  TCGA-ET-A3DT 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-ET-A3DV                  TCGA-ET-A3DW 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-FE-A22Z                  TCGA-FE-A230 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-FE-A231                  TCGA-FE-A232 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-FE-A233                  TCGA-FE-A234 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-FE-A235                  TCGA-FE-A236 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-FE-A237                  TCGA-FE-A239 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-FE-A23A                  TCGA-FY-A2QD 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-FY-A3BL                  TCGA-FY-A3ON 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-GE-A2C6                  TCGA-H2-A2K9 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-IM-A3EB                  TCGA-IM-A3ED 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-J8-A3NZ                  TCGA-J8-A3O0 
"DEL PEAK 11(8P12) WILD-TYPE" "DEL PEAK 11(8P12) WILD-TYPE" 
                 TCGA-J8-A3O1 
"DEL PEAK 11(8P12) WILD-TYPE" 
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 11(8P12) MUTATED        4      0      0      0
  DEL PEAK 11(8P12) WILD-TYPE    150     55    116    167
D10V5, multiclass
        clus
vv       DEL PEAK 11(8P12) MUTATED DEL PEAK 11(8P12) WILD-TYPE
  CLUS_1                         4                         150
  CLUS_2                         0                          55
  CLUS_3                         0                         116
  CLUS_4                         0                         167
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 11(8P12) MUTATED        0      4      0      0
  DEL PEAK 11(8P12) WILD-TYPE    197    124     96     71
D10V6, multiclass
        clus
vv       DEL PEAK 11(8P12) MUTATED DEL PEAK 11(8P12) WILD-TYPE
  CLUS_1                         0                         197
  CLUS_2                         4                         124
  CLUS_3                         0                          96
  CLUS_4                         0                          71
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(8P12) MUTATED        4      0      0
  DEL PEAK 11(8P12) WILD-TYPE    146    173    170
D10V7, multiclass
        clus
vv       DEL PEAK 11(8P12) MUTATED DEL PEAK 11(8P12) WILD-TYPE
  CLUS_1                         4                         146
  CLUS_2                         0                         173
  CLUS_3                         0                         170
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(8P12) MUTATED        0      4      0
  DEL PEAK 11(8P12) WILD-TYPE    155    126    208
D10V8, multiclass
        clus
vv       DEL PEAK 11(8P12) MUTATED DEL PEAK 11(8P12) WILD-TYPE
  CLUS_1                         0                         155
  CLUS_2                         4                         126
  CLUS_3                         0                         208
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(8P12) MUTATED        4      0      0
  DEL PEAK 11(8P12) WILD-TYPE    159    169    161
D10V9, multiclass
        clus
vv       DEL PEAK 11(8P12) MUTATED DEL PEAK 11(8P12) WILD-TYPE
  CLUS_1                         4                         159
  CLUS_2                         0                         169
  CLUS_3                         0                         161
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(8P12) MUTATED        0      4      0
  DEL PEAK 11(8P12) WILD-TYPE    199    124    166
D10V10, multiclass
        clus
vv       DEL PEAK 11(8P12) MUTATED DEL PEAK 11(8P12) WILD-TYPE
  CLUS_1                         0                         199
  CLUS_2                         4                         124
  CLUS_3                         0                         166

Clustering(11) Variable = DEL PEAK 12(8Q24.22) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(8Q24.22) MUTATED        5      2      0
  DEL PEAK 12(8Q24.22) WILD-TYPE     29    381     77
D11V1, multiclass
        clus
vv       DEL PEAK 12(8Q24.22) MUTATED DEL PEAK 12(8Q24.22) WILD-TYPE
  CLUS_1                            5                             29
  CLUS_2                            2                            381
  CLUS_3                            0                             77
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(8Q24.22) MUTATED        7      0      0
  DEL PEAK 12(8Q24.22) WILD-TYPE    144     83    260
D11V2, multiclass
        clus
vv       DEL PEAK 12(8Q24.22) MUTATED DEL PEAK 12(8Q24.22) WILD-TYPE
  CLUS_1                            7                            144
  CLUS_2                            0                             83
  CLUS_3                            0                            260
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(8Q24.22) MUTATED        1      2      1
  DEL PEAK 12(8Q24.22) WILD-TYPE     60     77     80
D11V3, multiclass
        clus
vv       DEL PEAK 12(8Q24.22) MUTATED DEL PEAK 12(8Q24.22) WILD-TYPE
  CLUS_1                            1                             60
  CLUS_2                            2                             77
  CLUS_3                            1                             80
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(8Q24.22) MUTATED        2      0      2
  DEL PEAK 12(8Q24.22) WILD-TYPE     29     94     94
D11V4, multiclass
        clus
vv       DEL PEAK 12(8Q24.22) MUTATED DEL PEAK 12(8Q24.22) WILD-TYPE
  CLUS_1                            2                             29
  CLUS_2                            0                             94
  CLUS_3                            2                             94
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 12(8Q24.22) MUTATED        7      0      0      0
  DEL PEAK 12(8Q24.22) WILD-TYPE    147     55    116    167
D11V5, multiclass
        clus
vv       DEL PEAK 12(8Q24.22) MUTATED DEL PEAK 12(8Q24.22) WILD-TYPE
  CLUS_1                            7                            147
  CLUS_2                            0                             55
  CLUS_3                            0                            116
  CLUS_4                            0                            167
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 12(8Q24.22) MUTATED        0      7      0      0
  DEL PEAK 12(8Q24.22) WILD-TYPE    197    121     96     71
D11V6, multiclass
        clus
vv       DEL PEAK 12(8Q24.22) MUTATED DEL PEAK 12(8Q24.22) WILD-TYPE
  CLUS_1                            0                            197
  CLUS_2                            7                            121
  CLUS_3                            0                             96
  CLUS_4                            0                             71
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(8Q24.22) MUTATED        7      0      0
  DEL PEAK 12(8Q24.22) WILD-TYPE    143    173    170
D11V7, multiclass
        clus
vv       DEL PEAK 12(8Q24.22) MUTATED DEL PEAK 12(8Q24.22) WILD-TYPE
  CLUS_1                            7                            143
  CLUS_2                            0                            173
  CLUS_3                            0                            170
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(8Q24.22) MUTATED        0      7      0
  DEL PEAK 12(8Q24.22) WILD-TYPE    155    123    208
D11V8, multiclass
        clus
vv       DEL PEAK 12(8Q24.22) MUTATED DEL PEAK 12(8Q24.22) WILD-TYPE
  CLUS_1                            0                            155
  CLUS_2                            7                            123
  CLUS_3                            0                            208
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(8Q24.22) MUTATED        7      0      0
  DEL PEAK 12(8Q24.22) WILD-TYPE    156    169    161
D11V9, multiclass
        clus
vv       DEL PEAK 12(8Q24.22) MUTATED DEL PEAK 12(8Q24.22) WILD-TYPE
  CLUS_1                            7                            156
  CLUS_2                            0                            169
  CLUS_3                            0                            161
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(8Q24.22) MUTATED        0      7      0
  DEL PEAK 12(8Q24.22) WILD-TYPE    199    121    166
D11V10, multiclass
        clus
vv       DEL PEAK 12(8Q24.22) MUTATED DEL PEAK 12(8Q24.22) WILD-TYPE
  CLUS_1                            0                            199
  CLUS_2                            7                            121
  CLUS_3                            0                            166

Clustering(12) Variable = DEL PEAK 13(9Q21.13) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(9Q21.13) MUTATED       16      7      1
  DEL PEAK 13(9Q21.13) WILD-TYPE     18    376     76
D12V1, multiclass
        clus
vv       DEL PEAK 13(9Q21.13) MUTATED DEL PEAK 13(9Q21.13) WILD-TYPE
  CLUS_1                           16                             18
  CLUS_2                            7                            376
  CLUS_3                            1                             76
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(9Q21.13) MUTATED       12      5      7
  DEL PEAK 13(9Q21.13) WILD-TYPE    139     78    253
D12V2, multiclass
        clus
vv       DEL PEAK 13(9Q21.13) MUTATED DEL PEAK 13(9Q21.13) WILD-TYPE
  CLUS_1                           12                            139
  CLUS_2                            5                             78
  CLUS_3                            7                            253
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(9Q21.13) MUTATED        0      4      4
  DEL PEAK 13(9Q21.13) WILD-TYPE     61     75     77
D12V3, multiclass
        clus
vv       DEL PEAK 13(9Q21.13) MUTATED DEL PEAK 13(9Q21.13) WILD-TYPE
  CLUS_1                            0                             61
  CLUS_2                            4                             75
  CLUS_3                            4                             77
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(9Q21.13) MUTATED        4      2      2
  DEL PEAK 13(9Q21.13) WILD-TYPE     27     92     94
D12V4, multiclass
        clus
vv       DEL PEAK 13(9Q21.13) MUTATED DEL PEAK 13(9Q21.13) WILD-TYPE
  CLUS_1                            4                             27
  CLUS_2                            2                             92
  CLUS_3                            2                             94
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 13(9Q21.13) MUTATED       12      4      3      5
  DEL PEAK 13(9Q21.13) WILD-TYPE    142     51    113    162
D12V5, multiclass
        clus
vv       DEL PEAK 13(9Q21.13) MUTATED DEL PEAK 13(9Q21.13) WILD-TYPE
  CLUS_1                           12                            142
  CLUS_2                            4                             51
  CLUS_3                            3                            113
  CLUS_4                            5                            162
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 13(9Q21.13) MUTATED        9     12      3      0
  DEL PEAK 13(9Q21.13) WILD-TYPE    188    116     93     71
D12V6, multiclass
        clus
vv       DEL PEAK 13(9Q21.13) MUTATED DEL PEAK 13(9Q21.13) WILD-TYPE
  CLUS_1                            9                            188
  CLUS_2                           12                            116
  CLUS_3                            3                             93
  CLUS_4                            0                             71
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(9Q21.13) MUTATED       11      2     11
  DEL PEAK 13(9Q21.13) WILD-TYPE    139    171    159
D12V7, multiclass
        clus
vv       DEL PEAK 13(9Q21.13) MUTATED DEL PEAK 13(9Q21.13) WILD-TYPE
  CLUS_1                           11                            139
  CLUS_2                            2                            171
  CLUS_3                           11                            159
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(9Q21.13) MUTATED        2     12     10
  DEL PEAK 13(9Q21.13) WILD-TYPE    153    118    198
D12V8, multiclass
        clus
vv       DEL PEAK 13(9Q21.13) MUTATED DEL PEAK 13(9Q21.13) WILD-TYPE
  CLUS_1                            2                            153
  CLUS_2                           12                            118
  CLUS_3                           10                            198
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(9Q21.13) MUTATED       11      2     11
  DEL PEAK 13(9Q21.13) WILD-TYPE    152    167    150
D12V9, multiclass
        clus
vv       DEL PEAK 13(9Q21.13) MUTATED DEL PEAK 13(9Q21.13) WILD-TYPE
  CLUS_1                           11                            152
  CLUS_2                            2                            167
  CLUS_3                           11                            150
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(9Q21.13) MUTATED       10     12      2
  DEL PEAK 13(9Q21.13) WILD-TYPE    189    116    164
D12V10, multiclass
        clus
vv       DEL PEAK 13(9Q21.13) MUTATED DEL PEAK 13(9Q21.13) WILD-TYPE
  CLUS_1                           10                            189
  CLUS_2                           12                            116
  CLUS_3                            2                            164

Clustering(13) Variable = DEL PEAK 14(10Q21.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(10Q21.2) MUTATED        6      6      0
  DEL PEAK 14(10Q21.2) WILD-TYPE     28    377     77
D13V1, multiclass
        clus
vv       DEL PEAK 14(10Q21.2) MUTATED DEL PEAK 14(10Q21.2) WILD-TYPE
  CLUS_1                            6                             28
  CLUS_2                            6                            377
  CLUS_3                            0                             77
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(10Q21.2) MUTATED        6      3      3
  DEL PEAK 14(10Q21.2) WILD-TYPE    145     80    257
D13V2, multiclass
        clus
vv       DEL PEAK 14(10Q21.2) MUTATED DEL PEAK 14(10Q21.2) WILD-TYPE
  CLUS_1                            6                            145
  CLUS_2                            3                             80
  CLUS_3                            3                            257
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(10Q21.2) MUTATED        3      0      3
  DEL PEAK 14(10Q21.2) WILD-TYPE     58     79     78
D13V3, multiclass
        clus
vv       DEL PEAK 14(10Q21.2) MUTATED DEL PEAK 14(10Q21.2) WILD-TYPE
  CLUS_1                            3                             58
  CLUS_2                            0                             79
  CLUS_3                            3                             78
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(10Q21.2) MUTATED        0      2      4
  DEL PEAK 14(10Q21.2) WILD-TYPE     31     92     92
D13V4, multiclass
        clus
vv       DEL PEAK 14(10Q21.2) MUTATED DEL PEAK 14(10Q21.2) WILD-TYPE
  CLUS_1                            0                             31
  CLUS_2                            2                             92
  CLUS_3                            4                             92
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 14(10Q21.2) MUTATED        7      2      3      0
  DEL PEAK 14(10Q21.2) WILD-TYPE    147     53    113    167
D13V5, multiclass
        clus
vv       DEL PEAK 14(10Q21.2) MUTATED DEL PEAK 14(10Q21.2) WILD-TYPE
  CLUS_1                            7                            147
  CLUS_2                            2                             53
  CLUS_3                            3                            113
  CLUS_4                            0                            167
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 14(10Q21.2) MUTATED        0      7      2      3
  DEL PEAK 14(10Q21.2) WILD-TYPE    197    121     94     68
D13V6, multiclass
        clus
vv       DEL PEAK 14(10Q21.2) MUTATED DEL PEAK 14(10Q21.2) WILD-TYPE
  CLUS_1                            0                            197
  CLUS_2                            7                            121
  CLUS_3                            2                             94
  CLUS_4                            3                             68
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(10Q21.2) MUTATED        7      2      3
  DEL PEAK 14(10Q21.2) WILD-TYPE    143    171    167
D13V7, multiclass
        clus
vv       DEL PEAK 14(10Q21.2) MUTATED DEL PEAK 14(10Q21.2) WILD-TYPE
  CLUS_1                            7                            143
  CLUS_2                            2                            171
  CLUS_3                            3                            167
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(10Q21.2) MUTATED        1      7      4
  DEL PEAK 14(10Q21.2) WILD-TYPE    154    123    204
D13V8, multiclass
        clus
vv       DEL PEAK 14(10Q21.2) MUTATED DEL PEAK 14(10Q21.2) WILD-TYPE
  CLUS_1                            1                            154
  CLUS_2                            7                            123
  CLUS_3                            4                            204
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(10Q21.2) MUTATED        8      1      3
  DEL PEAK 14(10Q21.2) WILD-TYPE    155    168    158
D13V9, multiclass
        clus
vv       DEL PEAK 14(10Q21.2) MUTATED DEL PEAK 14(10Q21.2) WILD-TYPE
  CLUS_1                            8                            155
  CLUS_2                            1                            168
  CLUS_3                            3                            158
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(10Q21.2) MUTATED        3      7      2
  DEL PEAK 14(10Q21.2) WILD-TYPE    196    121    164
D13V10, multiclass
        clus
vv       DEL PEAK 14(10Q21.2) MUTATED DEL PEAK 14(10Q21.2) WILD-TYPE
  CLUS_1                            3                            196
  CLUS_2                            7                            121
  CLUS_3                            2                            164

Clustering(14) Variable = DEL PEAK 15(10Q23.31) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(10Q23.31) MUTATED        7      5      0
  DEL PEAK 15(10Q23.31) WILD-TYPE     27    378     77
D14V1, multiclass
        clus
vv       DEL PEAK 15(10Q23.31) MUTATED DEL PEAK 15(10Q23.31) WILD-TYPE
  CLUS_1                             7                              27
  CLUS_2                             5                             378
  CLUS_3                             0                              77
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(10Q23.31) MUTATED        9      1      2
  DEL PEAK 15(10Q23.31) WILD-TYPE    142     82    258
D14V2, multiclass
        clus
vv       DEL PEAK 15(10Q23.31) MUTATED DEL PEAK 15(10Q23.31) WILD-TYPE
  CLUS_1                             9                             142
  CLUS_2                             1                              82
  CLUS_3                             2                             258
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(10Q23.31) MUTATED        4      0      2
  DEL PEAK 15(10Q23.31) WILD-TYPE     57     79     79
D14V3, multiclass
        clus
vv       DEL PEAK 15(10Q23.31) MUTATED DEL PEAK 15(10Q23.31) WILD-TYPE
  CLUS_1                             4                              57
  CLUS_2                             0                              79
  CLUS_3                             2                              79
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(10Q23.31) MUTATED        0      0      6
  DEL PEAK 15(10Q23.31) WILD-TYPE     31     94     90
D14V4, multiclass
        clus
vv       DEL PEAK 15(10Q23.31) MUTATED DEL PEAK 15(10Q23.31) WILD-TYPE
  CLUS_1                             0                              31
  CLUS_2                             0                              94
  CLUS_3                             6                              90
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 15(10Q23.31) MUTATED       10      0      2      0
  DEL PEAK 15(10Q23.31) WILD-TYPE    144     55    114    167
D14V5, multiclass
        clus
vv       DEL PEAK 15(10Q23.31) MUTATED DEL PEAK 15(10Q23.31) WILD-TYPE
  CLUS_1                            10                             144
  CLUS_2                             0                              55
  CLUS_3                             2                             114
  CLUS_4                             0                             167
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 15(10Q23.31) MUTATED        0      9      2      1
  DEL PEAK 15(10Q23.31) WILD-TYPE    197    119     94     70
D14V6, multiclass
        clus
vv       DEL PEAK 15(10Q23.31) MUTATED DEL PEAK 15(10Q23.31) WILD-TYPE
  CLUS_1                             0                             197
  CLUS_2                             9                             119
  CLUS_3                             2                              94
  CLUS_4                             1                              70
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(10Q23.31) MUTATED        9      1      2
  DEL PEAK 15(10Q23.31) WILD-TYPE    141    172    168
D14V7, multiclass
        clus
vv       DEL PEAK 15(10Q23.31) MUTATED DEL PEAK 15(10Q23.31) WILD-TYPE
  CLUS_1                             9                             141
  CLUS_2                             1                             172
  CLUS_3                             2                             168
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(10Q23.31) MUTATED        1      9      2
  DEL PEAK 15(10Q23.31) WILD-TYPE    154    121    206
D14V8, multiclass
        clus
vv       DEL PEAK 15(10Q23.31) MUTATED DEL PEAK 15(10Q23.31) WILD-TYPE
  CLUS_1                             1                             154
  CLUS_2                             9                             121
  CLUS_3                             2                             206
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(10Q23.31) MUTATED       10      0      2
  DEL PEAK 15(10Q23.31) WILD-TYPE    153    169    159
D14V9, multiclass
        clus
vv       DEL PEAK 15(10Q23.31) MUTATED DEL PEAK 15(10Q23.31) WILD-TYPE
  CLUS_1                            10                             153
  CLUS_2                             0                             169
  CLUS_3                             2                             159
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(10Q23.31) MUTATED        2      9      1
  DEL PEAK 15(10Q23.31) WILD-TYPE    197    119    165
D14V10, multiclass
        clus
vv       DEL PEAK 15(10Q23.31) MUTATED DEL PEAK 15(10Q23.31) WILD-TYPE
  CLUS_1                             2                             197
  CLUS_2                             9                             119
  CLUS_3                             1                             165

Clustering(15) Variable = DEL PEAK 16(11P15.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(11P15.1) MUTATED        6      0      1
  DEL PEAK 16(11P15.1) WILD-TYPE     28    383     76
D15V1, multiclass
        clus
vv       DEL PEAK 16(11P15.1) MUTATED DEL PEAK 16(11P15.1) WILD-TYPE
  CLUS_1                            6                             28
  CLUS_2                            0                            383
  CLUS_3                            1                             76
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(11P15.1) MUTATED        6      0      1
  DEL PEAK 16(11P15.1) WILD-TYPE    145     83    259
D15V2, multiclass
        clus
vv       DEL PEAK 16(11P15.1) MUTATED DEL PEAK 16(11P15.1) WILD-TYPE
  CLUS_1                            6                            145
  CLUS_2                            0                             83
  CLUS_3                            1                            259
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(11P15.1) MUTATED        1      0      2
  DEL PEAK 16(11P15.1) WILD-TYPE     60     79     79
D15V3, multiclass
        clus
vv       DEL PEAK 16(11P15.1) MUTATED DEL PEAK 16(11P15.1) WILD-TYPE
  CLUS_1                            1                             60
  CLUS_2                            0                             79
  CLUS_3                            2                             79
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(11P15.1) MUTATED        0      1      2
  DEL PEAK 16(11P15.1) WILD-TYPE     31     93     94
D15V4, multiclass
        clus
vv       DEL PEAK 16(11P15.1) MUTATED DEL PEAK 16(11P15.1) WILD-TYPE
  CLUS_1                            0                             31
  CLUS_2                            1                             93
  CLUS_3                            2                             94
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 16(11P15.1) MUTATED        6      1      0      0
  DEL PEAK 16(11P15.1) WILD-TYPE    148     54    116    167
D15V5, multiclass
        clus
vv       DEL PEAK 16(11P15.1) MUTATED DEL PEAK 16(11P15.1) WILD-TYPE
  CLUS_1                            6                            148
  CLUS_2                            1                             54
  CLUS_3                            0                            116
  CLUS_4                            0                            167
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 16(11P15.1) MUTATED        1      6      0      0
  DEL PEAK 16(11P15.1) WILD-TYPE    196    122     96     71
D15V6, multiclass
        clus
vv       DEL PEAK 16(11P15.1) MUTATED DEL PEAK 16(11P15.1) WILD-TYPE
  CLUS_1                            1                            196
  CLUS_2                            6                            122
  CLUS_3                            0                             96
  CLUS_4                            0                             71
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(11P15.1) MUTATED        6      0      1
  DEL PEAK 16(11P15.1) WILD-TYPE    144    173    169
D15V7, multiclass
        clus
vv       DEL PEAK 16(11P15.1) MUTATED DEL PEAK 16(11P15.1) WILD-TYPE
  CLUS_1                            6                            144
  CLUS_2                            0                            173
  CLUS_3                            1                            169
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(11P15.1) MUTATED        0      6      1
  DEL PEAK 16(11P15.1) WILD-TYPE    155    124    207
D15V8, multiclass
        clus
vv       DEL PEAK 16(11P15.1) MUTATED DEL PEAK 16(11P15.1) WILD-TYPE
  CLUS_1                            0                            155
  CLUS_2                            6                            124
  CLUS_3                            1                            207
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(11P15.1) MUTATED        6      0      1
  DEL PEAK 16(11P15.1) WILD-TYPE    157    169    160
D15V9, multiclass
        clus
vv       DEL PEAK 16(11P15.1) MUTATED DEL PEAK 16(11P15.1) WILD-TYPE
  CLUS_1                            6                            157
  CLUS_2                            0                            169
  CLUS_3                            1                            160
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(11P15.1) MUTATED        1      6      0
  DEL PEAK 16(11P15.1) WILD-TYPE    198    122    166
D15V10, multiclass
        clus
vv       DEL PEAK 16(11P15.1) MUTATED DEL PEAK 16(11P15.1) WILD-TYPE
  CLUS_1                            1                            198
  CLUS_2                            6                            122
  CLUS_3                            0                            166

Clustering(16) Variable = DEL PEAK 17(13Q12.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(13Q12.3) MUTATED        5      9      2
  DEL PEAK 17(13Q12.3) WILD-TYPE     29    374     75
D16V1, multiclass
        clus
vv       DEL PEAK 17(13Q12.3) MUTATED DEL PEAK 17(13Q12.3) WILD-TYPE
  CLUS_1                            5                             29
  CLUS_2                            9                            374
  CLUS_3                            2                             75
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(13Q12.3) MUTATED       11      3      2
  DEL PEAK 17(13Q12.3) WILD-TYPE    140     80    258
D16V2, multiclass
        clus
vv       DEL PEAK 17(13Q12.3) MUTATED DEL PEAK 17(13Q12.3) WILD-TYPE
  CLUS_1                           11                            140
  CLUS_2                            3                             80
  CLUS_3                            2                            258
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(13Q12.3) MUTATED        1      1      5
  DEL PEAK 17(13Q12.3) WILD-TYPE     60     78     76
D16V3, multiclass
        clus
vv       DEL PEAK 17(13Q12.3) MUTATED DEL PEAK 17(13Q12.3) WILD-TYPE
  CLUS_1                            1                             60
  CLUS_2                            1                             78
  CLUS_3                            5                             76
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(13Q12.3) MUTATED        1      1      5
  DEL PEAK 17(13Q12.3) WILD-TYPE     30     93     91
D16V4, multiclass
        clus
vv       DEL PEAK 17(13Q12.3) MUTATED DEL PEAK 17(13Q12.3) WILD-TYPE
  CLUS_1                            1                             30
  CLUS_2                            1                             93
  CLUS_3                            5                             91
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 17(13Q12.3) MUTATED       11      3      2      0
  DEL PEAK 17(13Q12.3) WILD-TYPE    143     52    114    167
D16V5, multiclass
        clus
vv       DEL PEAK 17(13Q12.3) MUTATED DEL PEAK 17(13Q12.3) WILD-TYPE
  CLUS_1                           11                            143
  CLUS_2                            3                             52
  CLUS_3                            2                            114
  CLUS_4                            0                            167
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 17(13Q12.3) MUTATED        2     10      2      2
  DEL PEAK 17(13Q12.3) WILD-TYPE    195    118     94     69
D16V6, multiclass
        clus
vv       DEL PEAK 17(13Q12.3) MUTATED DEL PEAK 17(13Q12.3) WILD-TYPE
  CLUS_1                            2                            195
  CLUS_2                           10                            118
  CLUS_3                            2                             94
  CLUS_4                            2                             69
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(13Q12.3) MUTATED       10      3      3
  DEL PEAK 17(13Q12.3) WILD-TYPE    140    170    167
D16V7, multiclass
        clus
vv       DEL PEAK 17(13Q12.3) MUTATED DEL PEAK 17(13Q12.3) WILD-TYPE
  CLUS_1                           10                            140
  CLUS_2                            3                            170
  CLUS_3                            3                            167
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(13Q12.3) MUTATED        2     10      4
  DEL PEAK 17(13Q12.3) WILD-TYPE    153    120    204
D16V8, multiclass
        clus
vv       DEL PEAK 17(13Q12.3) MUTATED DEL PEAK 17(13Q12.3) WILD-TYPE
  CLUS_1                            2                            153
  CLUS_2                           10                            120
  CLUS_3                            4                            204
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(13Q12.3) MUTATED       11      2      3
  DEL PEAK 17(13Q12.3) WILD-TYPE    152    167    158
D16V9, multiclass
        clus
vv       DEL PEAK 17(13Q12.3) MUTATED DEL PEAK 17(13Q12.3) WILD-TYPE
  CLUS_1                           11                            152
  CLUS_2                            2                            167
  CLUS_3                            3                            158
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(13Q12.3) MUTATED        4     10      2
  DEL PEAK 17(13Q12.3) WILD-TYPE    195    118    164
D16V10, multiclass
        clus
vv       DEL PEAK 17(13Q12.3) MUTATED DEL PEAK 17(13Q12.3) WILD-TYPE
  CLUS_1                            4                            195
  CLUS_2                           10                            118
  CLUS_3                            2                            164

Clustering(17) Variable = DEL PEAK 18(13Q21.31) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(13Q21.31) MUTATED        5     10      3
  DEL PEAK 18(13Q21.31) WILD-TYPE     29    373     74
D17V1, multiclass
        clus
vv       DEL PEAK 18(13Q21.31) MUTATED DEL PEAK 18(13Q21.31) WILD-TYPE
  CLUS_1                             5                              29
  CLUS_2                            10                             373
  CLUS_3                             3                              74
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(13Q21.31) MUTATED       11      2      5
  DEL PEAK 18(13Q21.31) WILD-TYPE    140     81    255
D17V2, multiclass
        clus
vv       DEL PEAK 18(13Q21.31) MUTATED DEL PEAK 18(13Q21.31) WILD-TYPE
  CLUS_1                            11                             140
  CLUS_2                             2                              81
  CLUS_3                             5                             255
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(13Q21.31) MUTATED        1      2      8
  DEL PEAK 18(13Q21.31) WILD-TYPE     60     77     73
D17V3, multiclass
        clus
vv       DEL PEAK 18(13Q21.31) MUTATED DEL PEAK 18(13Q21.31) WILD-TYPE
  CLUS_1                             1                              60
  CLUS_2                             2                              77
  CLUS_3                             8                              73
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(13Q21.31) MUTATED        1      4      6
  DEL PEAK 18(13Q21.31) WILD-TYPE     30     90     90
D17V4, multiclass
        clus
vv       DEL PEAK 18(13Q21.31) MUTATED DEL PEAK 18(13Q21.31) WILD-TYPE
  CLUS_1                             1                              30
  CLUS_2                             4                              90
  CLUS_3                             6                              90
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 18(13Q21.31) MUTATED       11      2      5      0
  DEL PEAK 18(13Q21.31) WILD-TYPE    143     53    111    167
D17V5, multiclass
        clus
vv       DEL PEAK 18(13Q21.31) MUTATED DEL PEAK 18(13Q21.31) WILD-TYPE
  CLUS_1                            11                             143
  CLUS_2                             2                              53
  CLUS_3                             5                             111
  CLUS_4                             0                             167
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 18(13Q21.31) MUTATED        1     11      5      1
  DEL PEAK 18(13Q21.31) WILD-TYPE    196    117     91     70
D17V6, multiclass
        clus
vv       DEL PEAK 18(13Q21.31) MUTATED DEL PEAK 18(13Q21.31) WILD-TYPE
  CLUS_1                             1                             196
  CLUS_2                            11                             117
  CLUS_3                             5                              91
  CLUS_4                             1                              70
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(13Q21.31) MUTATED       11      6      1
  DEL PEAK 18(13Q21.31) WILD-TYPE    139    167    169
D17V7, multiclass
        clus
vv       DEL PEAK 18(13Q21.31) MUTATED DEL PEAK 18(13Q21.31) WILD-TYPE
  CLUS_1                            11                             139
  CLUS_2                             6                             167
  CLUS_3                             1                             169
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(13Q21.31) MUTATED        5     11      2
  DEL PEAK 18(13Q21.31) WILD-TYPE    150    119    206
D17V8, multiclass
        clus
vv       DEL PEAK 18(13Q21.31) MUTATED DEL PEAK 18(13Q21.31) WILD-TYPE
  CLUS_1                             5                             150
  CLUS_2                            11                             119
  CLUS_3                             2                             206
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(13Q21.31) MUTATED       12      5      1
  DEL PEAK 18(13Q21.31) WILD-TYPE    151    164    160
D17V9, multiclass
        clus
vv       DEL PEAK 18(13Q21.31) MUTATED DEL PEAK 18(13Q21.31) WILD-TYPE
  CLUS_1                            12                             151
  CLUS_2                             5                             164
  CLUS_3                             1                             160
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(13Q21.31) MUTATED        2     11      5
  DEL PEAK 18(13Q21.31) WILD-TYPE    197    117    161
D17V10, multiclass
        clus
vv       DEL PEAK 18(13Q21.31) MUTATED DEL PEAK 18(13Q21.31) WILD-TYPE
  CLUS_1                             2                             197
  CLUS_2                            11                             117
  CLUS_3                             5                             161

Clustering(18) Variable = DEL PEAK 19(15Q25.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(15Q25.3) MUTATED        5      3      1
  DEL PEAK 19(15Q25.3) WILD-TYPE     29    380     76
D18V1, multiclass
        clus
vv       DEL PEAK 19(15Q25.3) MUTATED DEL PEAK 19(15Q25.3) WILD-TYPE
  CLUS_1                            5                             29
  CLUS_2                            3                            380
  CLUS_3                            1                             76
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(15Q25.3) MUTATED        8      0      1
  DEL PEAK 19(15Q25.3) WILD-TYPE    143     83    259
D18V2, multiclass
        clus
vv       DEL PEAK 19(15Q25.3) MUTATED DEL PEAK 19(15Q25.3) WILD-TYPE
  CLUS_1                            8                            143
  CLUS_2                            0                             83
  CLUS_3                            1                            259
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(15Q25.3) MUTATED        0      2      4
  DEL PEAK 19(15Q25.3) WILD-TYPE     61     77     77
D18V3, multiclass
        clus
vv       DEL PEAK 19(15Q25.3) MUTATED DEL PEAK 19(15Q25.3) WILD-TYPE
  CLUS_1                            0                             61
  CLUS_2                            2                             77
  CLUS_3                            4                             77
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(15Q25.3) MUTATED        2      0      4
  DEL PEAK 19(15Q25.3) WILD-TYPE     29     94     92
D18V4, multiclass
        clus
vv       DEL PEAK 19(15Q25.3) MUTATED DEL PEAK 19(15Q25.3) WILD-TYPE
  CLUS_1                            2                             29
  CLUS_2                            0                             94
  CLUS_3                            4                             92
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 19(15Q25.3) MUTATED        8      0      0      1
  DEL PEAK 19(15Q25.3) WILD-TYPE    146     55    116    166
D18V5, multiclass
        clus
vv       DEL PEAK 19(15Q25.3) MUTATED DEL PEAK 19(15Q25.3) WILD-TYPE
  CLUS_1                            8                            146
  CLUS_2                            0                             55
  CLUS_3                            0                            116
  CLUS_4                            1                            166
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 19(15Q25.3) MUTATED        1      8      0      0
  DEL PEAK 19(15Q25.3) WILD-TYPE    196    120     96     71
D18V6, multiclass
        clus
vv       DEL PEAK 19(15Q25.3) MUTATED DEL PEAK 19(15Q25.3) WILD-TYPE
  CLUS_1                            1                            196
  CLUS_2                            8                            120
  CLUS_3                            0                             96
  CLUS_4                            0                             71
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(15Q25.3) MUTATED        8      1      0
  DEL PEAK 19(15Q25.3) WILD-TYPE    142    172    170
D18V7, multiclass
        clus
vv       DEL PEAK 19(15Q25.3) MUTATED DEL PEAK 19(15Q25.3) WILD-TYPE
  CLUS_1                            8                            142
  CLUS_2                            1                            172
  CLUS_3                            0                            170
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(15Q25.3) MUTATED        0      8      1
  DEL PEAK 19(15Q25.3) WILD-TYPE    155    122    207
D18V8, multiclass
        clus
vv       DEL PEAK 19(15Q25.3) MUTATED DEL PEAK 19(15Q25.3) WILD-TYPE
  CLUS_1                            0                            155
  CLUS_2                            8                            122
  CLUS_3                            1                            207
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(15Q25.3) MUTATED        8      1      0
  DEL PEAK 19(15Q25.3) WILD-TYPE    155    168    161
D18V9, multiclass
        clus
vv       DEL PEAK 19(15Q25.3) MUTATED DEL PEAK 19(15Q25.3) WILD-TYPE
  CLUS_1                            8                            155
  CLUS_2                            1                            168
  CLUS_3                            0                            161
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(15Q25.3) MUTATED        1      8      0
  DEL PEAK 19(15Q25.3) WILD-TYPE    198    120    166
D18V10, multiclass
        clus
vv       DEL PEAK 19(15Q25.3) MUTATED DEL PEAK 19(15Q25.3) WILD-TYPE
  CLUS_1                            1                            198
  CLUS_2                            8                            120
  CLUS_3                            0                            166

Clustering(19) Variable = DEL PEAK 21(16Q23.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(16Q23.3) MUTATED        2      3      1
  DEL PEAK 21(16Q23.3) WILD-TYPE     32    380     76
D19V1, multiclass
        clus
vv       DEL PEAK 21(16Q23.3) MUTATED DEL PEAK 21(16Q23.3) WILD-TYPE
  CLUS_1                            2                             32
  CLUS_2                            3                            380
  CLUS_3                            1                             76
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(16Q23.3) MUTATED        0      0      6
  DEL PEAK 21(16Q23.3) WILD-TYPE    151     83    254
D19V2, multiclass
        clus
vv       DEL PEAK 21(16Q23.3) MUTATED DEL PEAK 21(16Q23.3) WILD-TYPE
  CLUS_1                            0                            151
  CLUS_2                            0                             83
  CLUS_3                            6                            254
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(16Q23.3) MUTATED        0      2      3
  DEL PEAK 21(16Q23.3) WILD-TYPE     61     77     78
D19V3, multiclass
        clus
vv       DEL PEAK 21(16Q23.3) MUTATED DEL PEAK 21(16Q23.3) WILD-TYPE
  CLUS_1                            0                             61
  CLUS_2                            2                             77
  CLUS_3                            3                             78
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(16Q23.3) MUTATED        1      4      0
  DEL PEAK 21(16Q23.3) WILD-TYPE     30     90     96
D19V4, multiclass
        clus
vv       DEL PEAK 21(16Q23.3) MUTATED DEL PEAK 21(16Q23.3) WILD-TYPE
  CLUS_1                            1                             30
  CLUS_2                            4                             90
  CLUS_3                            0                             96
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 21(16Q23.3) MUTATED        0      1      2      3
  DEL PEAK 21(16Q23.3) WILD-TYPE    154     54    114    164
D19V5, multiclass
        clus
vv       DEL PEAK 21(16Q23.3) MUTATED DEL PEAK 21(16Q23.3) WILD-TYPE
  CLUS_1                            0                            154
  CLUS_2                            1                             54
  CLUS_3                            2                            114
  CLUS_4                            3                            164
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 21(16Q23.3) MUTATED        4      0      2      0
  DEL PEAK 21(16Q23.3) WILD-TYPE    193    128     94     71
D19V6, multiclass
        clus
vv       DEL PEAK 21(16Q23.3) MUTATED DEL PEAK 21(16Q23.3) WILD-TYPE
  CLUS_1                            4                            193
  CLUS_2                            0                            128
  CLUS_3                            2                             94
  CLUS_4                            0                             71
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(16Q23.3) MUTATED        0      2      4
  DEL PEAK 21(16Q23.3) WILD-TYPE    150    171    166
D19V7, multiclass
        clus
vv       DEL PEAK 21(16Q23.3) MUTATED DEL PEAK 21(16Q23.3) WILD-TYPE
  CLUS_1                            0                            150
  CLUS_2                            2                            171
  CLUS_3                            4                            166
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(16Q23.3) MUTATED        2      0      4
  DEL PEAK 21(16Q23.3) WILD-TYPE    153    130    204
D19V8, multiclass
        clus
vv       DEL PEAK 21(16Q23.3) MUTATED DEL PEAK 21(16Q23.3) WILD-TYPE
  CLUS_1                            2                            153
  CLUS_2                            0                            130
  CLUS_3                            4                            204
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(16Q23.3) MUTATED        1      1      4
  DEL PEAK 21(16Q23.3) WILD-TYPE    162    168    157
D19V9, multiclass
        clus
vv       DEL PEAK 21(16Q23.3) MUTATED DEL PEAK 21(16Q23.3) WILD-TYPE
  CLUS_1                            1                            162
  CLUS_2                            1                            168
  CLUS_3                            4                            157
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(16Q23.3) MUTATED        4      0      2
  DEL PEAK 21(16Q23.3) WILD-TYPE    195    128    164
D19V10, multiclass
        clus
vv       DEL PEAK 21(16Q23.3) MUTATED DEL PEAK 21(16Q23.3) WILD-TYPE
  CLUS_1                            4                            195
  CLUS_2                            0                            128
  CLUS_3                            2                            164

Clustering(20) Variable = DEL PEAK 22(17P13.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(17P13.1) MUTATED        4      4      0
  DEL PEAK 22(17P13.1) WILD-TYPE     30    379     77
D20V1, multiclass
        clus
vv       DEL PEAK 22(17P13.1) MUTATED DEL PEAK 22(17P13.1) WILD-TYPE
  CLUS_1                            4                             30
  CLUS_2                            4                            379
  CLUS_3                            0                             77
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(17P13.1) MUTATED        4      0      4
  DEL PEAK 22(17P13.1) WILD-TYPE    147     83    256
D20V2, multiclass
        clus
vv       DEL PEAK 22(17P13.1) MUTATED DEL PEAK 22(17P13.1) WILD-TYPE
  CLUS_1                            4                            147
  CLUS_2                            0                             83
  CLUS_3                            4                            256
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(17P13.1) MUTATED        1      1      1
  DEL PEAK 22(17P13.1) WILD-TYPE     60     78     80
D20V3, multiclass
        clus
vv       DEL PEAK 22(17P13.1) MUTATED DEL PEAK 22(17P13.1) WILD-TYPE
  CLUS_1                            1                             60
  CLUS_2                            1                             78
  CLUS_3                            1                             80
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(17P13.1) MUTATED        1      0      2
  DEL PEAK 22(17P13.1) WILD-TYPE     30     94     94
D20V4, multiclass
        clus
vv       DEL PEAK 22(17P13.1) MUTATED DEL PEAK 22(17P13.1) WILD-TYPE
  CLUS_1                            1                             30
  CLUS_2                            0                             94
  CLUS_3                            2                             94
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 22(17P13.1) MUTATED        4      0      1      3
  DEL PEAK 22(17P13.1) WILD-TYPE    150     55    115    164
D20V5, multiclass
        clus
vv       DEL PEAK 22(17P13.1) MUTATED DEL PEAK 22(17P13.1) WILD-TYPE
  CLUS_1                            4                            150
  CLUS_2                            0                             55
  CLUS_3                            1                            115
  CLUS_4                            3                            164
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 22(17P13.1) MUTATED        3      4      1      0
  DEL PEAK 22(17P13.1) WILD-TYPE    194    124     95     71
D20V6, multiclass
        clus
vv       DEL PEAK 22(17P13.1) MUTATED DEL PEAK 22(17P13.1) WILD-TYPE
  CLUS_1                            3                            194
  CLUS_2                            4                            124
  CLUS_3                            1                             95
  CLUS_4                            0                             71
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(17P13.1) MUTATED        4      1      3
  DEL PEAK 22(17P13.1) WILD-TYPE    146    172    167
D20V7, multiclass
        clus
vv       DEL PEAK 22(17P13.1) MUTATED DEL PEAK 22(17P13.1) WILD-TYPE
  CLUS_1                            4                            146
  CLUS_2                            1                            172
  CLUS_3                            3                            167
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(17P13.1) MUTATED        1      4      3
  DEL PEAK 22(17P13.1) WILD-TYPE    154    126    205
D20V8, multiclass
        clus
vv       DEL PEAK 22(17P13.1) MUTATED DEL PEAK 22(17P13.1) WILD-TYPE
  CLUS_1                            1                            154
  CLUS_2                            4                            126
  CLUS_3                            3                            205
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(17P13.1) MUTATED        4      2      2
  DEL PEAK 22(17P13.1) WILD-TYPE    159    167    159
D20V9, multiclass
        clus
vv       DEL PEAK 22(17P13.1) MUTATED DEL PEAK 22(17P13.1) WILD-TYPE
  CLUS_1                            4                            159
  CLUS_2                            2                            167
  CLUS_3                            2                            159
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(17P13.1) MUTATED        3      4      1
  DEL PEAK 22(17P13.1) WILD-TYPE    196    124    165
D20V10, multiclass
        clus
vv       DEL PEAK 22(17P13.1) MUTATED DEL PEAK 22(17P13.1) WILD-TYPE
  CLUS_1                            3                            196
  CLUS_2                            4                            124
  CLUS_3                            1                            165

Clustering(21) Variable = DEL PEAK 23(18P11.21) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(18P11.21) MUTATED        3      0      1
  DEL PEAK 23(18P11.21) WILD-TYPE     31    383     76
D21V1, multiclass
        clus
vv       DEL PEAK 23(18P11.21) MUTATED DEL PEAK 23(18P11.21) WILD-TYPE
  CLUS_1                             3                              31
  CLUS_2                             0                             383
  CLUS_3                             1                              76
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(18P11.21) MUTATED        3      0      1
  DEL PEAK 23(18P11.21) WILD-TYPE    148     83    259
D21V2, multiclass
        clus
vv       DEL PEAK 23(18P11.21) MUTATED DEL PEAK 23(18P11.21) WILD-TYPE
  CLUS_1                             3                             148
  CLUS_2                             0                              83
  CLUS_3                             1                             259
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(18P11.21) MUTATED        1      1      1
  DEL PEAK 23(18P11.21) WILD-TYPE     60     78     80
D21V3, multiclass
        clus
vv       DEL PEAK 23(18P11.21) MUTATED DEL PEAK 23(18P11.21) WILD-TYPE
  CLUS_1                             1                              60
  CLUS_2                             1                              78
  CLUS_3                             1                              80
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(18P11.21) MUTATED        1      0      2
  DEL PEAK 23(18P11.21) WILD-TYPE     30     94     94
D21V4, multiclass
        clus
vv       DEL PEAK 23(18P11.21) MUTATED DEL PEAK 23(18P11.21) WILD-TYPE
  CLUS_1                             1                              30
  CLUS_2                             0                              94
  CLUS_3                             2                              94
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 23(18P11.21) MUTATED        3      0      1      0
  DEL PEAK 23(18P11.21) WILD-TYPE    151     55    115    167
D21V5, multiclass
        clus
vv       DEL PEAK 23(18P11.21) MUTATED DEL PEAK 23(18P11.21) WILD-TYPE
  CLUS_1                             3                             151
  CLUS_2                             0                              55
  CLUS_3                             1                             115
  CLUS_4                             0                             167
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 23(18P11.21) MUTATED        0      3      1      0
  DEL PEAK 23(18P11.21) WILD-TYPE    197    125     95     71
D21V6, multiclass
        clus
vv       DEL PEAK 23(18P11.21) MUTATED DEL PEAK 23(18P11.21) WILD-TYPE
  CLUS_1                             0                             197
  CLUS_2                             3                             125
  CLUS_3                             1                              95
  CLUS_4                             0                              71
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(18P11.21) MUTATED        3      1      0
  DEL PEAK 23(18P11.21) WILD-TYPE    147    172    170
D21V7, multiclass
        clus
vv       DEL PEAK 23(18P11.21) MUTATED DEL PEAK 23(18P11.21) WILD-TYPE
  CLUS_1                             3                             147
  CLUS_2                             1                             172
  CLUS_3                             0                             170
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(18P11.21) MUTATED        1      3      0
  DEL PEAK 23(18P11.21) WILD-TYPE    154    127    208
D21V8, multiclass
        clus
vv       DEL PEAK 23(18P11.21) MUTATED DEL PEAK 23(18P11.21) WILD-TYPE
  CLUS_1                             1                             154
  CLUS_2                             3                             127
  CLUS_3                             0                             208
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(18P11.21) MUTATED        4      0      0
  DEL PEAK 23(18P11.21) WILD-TYPE    159    169    161
D21V9, multiclass
        clus
vv       DEL PEAK 23(18P11.21) MUTATED DEL PEAK 23(18P11.21) WILD-TYPE
  CLUS_1                             4                             159
  CLUS_2                             0                             169
  CLUS_3                             0                             161
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(18P11.21) MUTATED        0      3      1
  DEL PEAK 23(18P11.21) WILD-TYPE    199    125    165
D21V10, multiclass
        clus
vv       DEL PEAK 23(18P11.21) MUTATED DEL PEAK 23(18P11.21) WILD-TYPE
  CLUS_1                             0                             199
  CLUS_2                             3                             125
  CLUS_3                             1                             165

Clustering(22) Variable = DEL PEAK 24(18Q22.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(18Q22.2) MUTATED        3      1      1
  DEL PEAK 24(18Q22.2) WILD-TYPE     31    382     76
D22V1, multiclass
        clus
vv       DEL PEAK 24(18Q22.2) MUTATED DEL PEAK 24(18Q22.2) WILD-TYPE
  CLUS_1                            3                             31
  CLUS_2                            1                            382
  CLUS_3                            1                             76
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(18Q22.2) MUTATED        4      0      1
  DEL PEAK 24(18Q22.2) WILD-TYPE    147     83    259
D22V2, multiclass
        clus
vv       DEL PEAK 24(18Q22.2) MUTATED DEL PEAK 24(18Q22.2) WILD-TYPE
  CLUS_1                            4                            147
  CLUS_2                            0                             83
  CLUS_3                            1                            259
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(18Q22.2) MUTATED        1      1      2
  DEL PEAK 24(18Q22.2) WILD-TYPE     60     78     79
D22V3, multiclass
        clus
vv       DEL PEAK 24(18Q22.2) MUTATED DEL PEAK 24(18Q22.2) WILD-TYPE
  CLUS_1                            1                             60
  CLUS_2                            1                             78
  CLUS_3                            2                             79
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(18Q22.2) MUTATED        1      0      3
  DEL PEAK 24(18Q22.2) WILD-TYPE     30     94     93
D22V4, multiclass
        clus
vv       DEL PEAK 24(18Q22.2) MUTATED DEL PEAK 24(18Q22.2) WILD-TYPE
  CLUS_1                            1                             30
  CLUS_2                            0                             94
  CLUS_3                            3                             93
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 24(18Q22.2) MUTATED        4      0      1      0
  DEL PEAK 24(18Q22.2) WILD-TYPE    150     55    115    167
D22V5, multiclass
        clus
vv       DEL PEAK 24(18Q22.2) MUTATED DEL PEAK 24(18Q22.2) WILD-TYPE
  CLUS_1                            4                            150
  CLUS_2                            0                             55
  CLUS_3                            1                            115
  CLUS_4                            0                            167
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 24(18Q22.2) MUTATED        0      4      1      0
  DEL PEAK 24(18Q22.2) WILD-TYPE    197    124     95     71
D22V6, multiclass
        clus
vv       DEL PEAK 24(18Q22.2) MUTATED DEL PEAK 24(18Q22.2) WILD-TYPE
  CLUS_1                            0                            197
  CLUS_2                            4                            124
  CLUS_3                            1                             95
  CLUS_4                            0                             71
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(18Q22.2) MUTATED        4      1      0
  DEL PEAK 24(18Q22.2) WILD-TYPE    146    172    170
D22V7, multiclass
        clus
vv       DEL PEAK 24(18Q22.2) MUTATED DEL PEAK 24(18Q22.2) WILD-TYPE
  CLUS_1                            4                            146
  CLUS_2                            1                            172
  CLUS_3                            0                            170
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(18Q22.2) MUTATED        1      4      0
  DEL PEAK 24(18Q22.2) WILD-TYPE    154    126    208
D22V8, multiclass
        clus
vv       DEL PEAK 24(18Q22.2) MUTATED DEL PEAK 24(18Q22.2) WILD-TYPE
  CLUS_1                            1                            154
  CLUS_2                            4                            126
  CLUS_3                            0                            208
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(18Q22.2) MUTATED        5      0      0
  DEL PEAK 24(18Q22.2) WILD-TYPE    158    169    161
D22V9, multiclass
        clus
vv       DEL PEAK 24(18Q22.2) MUTATED DEL PEAK 24(18Q22.2) WILD-TYPE
  CLUS_1                            5                            158
  CLUS_2                            0                            169
  CLUS_3                            0                            161
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(18Q22.2) MUTATED        0      4      1
  DEL PEAK 24(18Q22.2) WILD-TYPE    199    124    165
D22V10, multiclass
        clus
vv       DEL PEAK 24(18Q22.2) MUTATED DEL PEAK 24(18Q22.2) WILD-TYPE
  CLUS_1                            0                            199
  CLUS_2                            4                            124
  CLUS_3                            1                            165

Clustering(23) Variable = DEL PEAK 25(19P13.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(19P13.2) MUTATED        4      2      1
  DEL PEAK 25(19P13.2) WILD-TYPE     30    381     76
D23V1, multiclass
        clus
vv       DEL PEAK 25(19P13.2) MUTATED DEL PEAK 25(19P13.2) WILD-TYPE
  CLUS_1                            4                             30
  CLUS_2                            2                            381
  CLUS_3                            1                             76
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(19P13.2) MUTATED        7      0      0
  DEL PEAK 25(19P13.2) WILD-TYPE    144     83    260
D23V2, multiclass
        clus
vv       DEL PEAK 25(19P13.2) MUTATED DEL PEAK 25(19P13.2) WILD-TYPE
  CLUS_1                            7                            144
  CLUS_2                            0                             83
  CLUS_3                            0                            260
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(19P13.2) MUTATED        2      1      2
  DEL PEAK 25(19P13.2) WILD-TYPE     59     78     79
D23V3, multiclass
        clus
vv       DEL PEAK 25(19P13.2) MUTATED DEL PEAK 25(19P13.2) WILD-TYPE
  CLUS_1                            2                             59
  CLUS_2                            1                             78
  CLUS_3                            2                             79
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(19P13.2) MUTATED        1      0      4
  DEL PEAK 25(19P13.2) WILD-TYPE     30     94     92
D23V4, multiclass
        clus
vv       DEL PEAK 25(19P13.2) MUTATED DEL PEAK 25(19P13.2) WILD-TYPE
  CLUS_1                            1                             30
  CLUS_2                            0                             94
  CLUS_3                            4                             92
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 25(19P13.2) MUTATED        7      0      0      0
  DEL PEAK 25(19P13.2) WILD-TYPE    147     55    116    167
D23V5, multiclass
        clus
vv       DEL PEAK 25(19P13.2) MUTATED DEL PEAK 25(19P13.2) WILD-TYPE
  CLUS_1                            7                            147
  CLUS_2                            0                             55
  CLUS_3                            0                            116
  CLUS_4                            0                            167
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 25(19P13.2) MUTATED        0      7      0      0
  DEL PEAK 25(19P13.2) WILD-TYPE    197    121     96     71
D23V6, multiclass
        clus
vv       DEL PEAK 25(19P13.2) MUTATED DEL PEAK 25(19P13.2) WILD-TYPE
  CLUS_1                            0                            197
  CLUS_2                            7                            121
  CLUS_3                            0                             96
  CLUS_4                            0                             71
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(19P13.2) MUTATED        7      0      0
  DEL PEAK 25(19P13.2) WILD-TYPE    143    173    170
D23V7, multiclass
        clus
vv       DEL PEAK 25(19P13.2) MUTATED DEL PEAK 25(19P13.2) WILD-TYPE
  CLUS_1                            7                            143
  CLUS_2                            0                            173
  CLUS_3                            0                            170
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(19P13.2) MUTATED        0      7      0
  DEL PEAK 25(19P13.2) WILD-TYPE    155    123    208
D23V8, multiclass
        clus
vv       DEL PEAK 25(19P13.2) MUTATED DEL PEAK 25(19P13.2) WILD-TYPE
  CLUS_1                            0                            155
  CLUS_2                            7                            123
  CLUS_3                            0                            208
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(19P13.2) MUTATED        7      0      0
  DEL PEAK 25(19P13.2) WILD-TYPE    156    169    161
D23V9, multiclass
        clus
vv       DEL PEAK 25(19P13.2) MUTATED DEL PEAK 25(19P13.2) WILD-TYPE
  CLUS_1                            7                            156
  CLUS_2                            0                            169
  CLUS_3                            0                            161
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(19P13.2) MUTATED        0      7      0
  DEL PEAK 25(19P13.2) WILD-TYPE    199    121    166
D23V10, multiclass
        clus
vv       DEL PEAK 25(19P13.2) MUTATED DEL PEAK 25(19P13.2) WILD-TYPE
  CLUS_1                            0                            199
  CLUS_2                            7                            121
  CLUS_3                            0                            166

Clustering(24) Variable = DEL PEAK 28(21Q21.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(21Q21.1) MUTATED        5      2      2
  DEL PEAK 28(21Q21.1) WILD-TYPE     29    381     75
D24V1, multiclass
        clus
vv       DEL PEAK 28(21Q21.1) MUTATED DEL PEAK 28(21Q21.1) WILD-TYPE
  CLUS_1                            5                             29
  CLUS_2                            2                            381
  CLUS_3                            2                             75
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(21Q21.1) MUTATED        4      2      3
  DEL PEAK 28(21Q21.1) WILD-TYPE    147     81    257
D24V2, multiclass
        clus
vv       DEL PEAK 28(21Q21.1) MUTATED DEL PEAK 28(21Q21.1) WILD-TYPE
  CLUS_1                            4                            147
  CLUS_2                            2                             81
  CLUS_3                            3                            257
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(21Q21.1) MUTATED        1      3      0
  DEL PEAK 28(21Q21.1) WILD-TYPE     60     76     81
D24V3, multiclass
        clus
vv       DEL PEAK 28(21Q21.1) MUTATED DEL PEAK 28(21Q21.1) WILD-TYPE
  CLUS_1                            1                             60
  CLUS_2                            3                             76
  CLUS_3                            0                             81
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(21Q21.1) MUTATED        2      1      1
  DEL PEAK 28(21Q21.1) WILD-TYPE     29     93     95
D24V4, multiclass
        clus
vv       DEL PEAK 28(21Q21.1) MUTATED DEL PEAK 28(21Q21.1) WILD-TYPE
  CLUS_1                            2                             29
  CLUS_2                            1                             93
  CLUS_3                            1                             95
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 28(21Q21.1) MUTATED        4      1      1      3
  DEL PEAK 28(21Q21.1) WILD-TYPE    150     54    115    164
D24V5, multiclass
        clus
vv       DEL PEAK 28(21Q21.1) MUTATED DEL PEAK 28(21Q21.1) WILD-TYPE
  CLUS_1                            4                            150
  CLUS_2                            1                             54
  CLUS_3                            1                            115
  CLUS_4                            3                            164
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 28(21Q21.1) MUTATED        3      4      1      1
  DEL PEAK 28(21Q21.1) WILD-TYPE    194    124     95     70
D24V6, multiclass
        clus
vv       DEL PEAK 28(21Q21.1) MUTATED DEL PEAK 28(21Q21.1) WILD-TYPE
  CLUS_1                            3                            194
  CLUS_2                            4                            124
  CLUS_3                            1                             95
  CLUS_4                            1                             70
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(21Q21.1) MUTATED        4      0      5
  DEL PEAK 28(21Q21.1) WILD-TYPE    146    173    165
D24V7, multiclass
        clus
vv       DEL PEAK 28(21Q21.1) MUTATED DEL PEAK 28(21Q21.1) WILD-TYPE
  CLUS_1                            4                            146
  CLUS_2                            0                            173
  CLUS_3                            5                            165
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(21Q21.1) MUTATED        1      4      4
  DEL PEAK 28(21Q21.1) WILD-TYPE    154    126    204
D24V8, multiclass
        clus
vv       DEL PEAK 28(21Q21.1) MUTATED DEL PEAK 28(21Q21.1) WILD-TYPE
  CLUS_1                            1                            154
  CLUS_2                            4                            126
  CLUS_3                            4                            204
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(21Q21.1) MUTATED        4      0      5
  DEL PEAK 28(21Q21.1) WILD-TYPE    159    169    156
D24V9, multiclass
        clus
vv       DEL PEAK 28(21Q21.1) MUTATED DEL PEAK 28(21Q21.1) WILD-TYPE
  CLUS_1                            4                            159
  CLUS_2                            0                            169
  CLUS_3                            5                            156
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(21Q21.1) MUTATED        5      4      0
  DEL PEAK 28(21Q21.1) WILD-TYPE    194    124    166
D24V10, multiclass
        clus
vv       DEL PEAK 28(21Q21.1) MUTATED DEL PEAK 28(21Q21.1) WILD-TYPE
  CLUS_1                            5                            194
  CLUS_2                            4                            124
  CLUS_3                            0                            166

Clustering(25) Variable = DEL PEAK 29(22Q13.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(22Q13.1) MUTATED        9      0     77
  DEL PEAK 29(22Q13.1) WILD-TYPE     25    383      0
D25V1, multiclass
        clus
vv       DEL PEAK 29(22Q13.1) MUTATED DEL PEAK 29(22Q13.1) WILD-TYPE
  CLUS_1                            9                             25
  CLUS_2                            0                            383
  CLUS_3                           77                              0
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(22Q13.1) MUTATED       45      7     34
  DEL PEAK 29(22Q13.1) WILD-TYPE    106     76    226
D25V2, multiclass
        clus
vv       DEL PEAK 29(22Q13.1) MUTATED DEL PEAK 29(22Q13.1) WILD-TYPE
  CLUS_1                           45                            106
  CLUS_2                            7                             76
  CLUS_3                           34                            226
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(22Q13.1) MUTATED       15      9     14
  DEL PEAK 29(22Q13.1) WILD-TYPE     46     70     67
D25V3, multiclass
        clus
vv       DEL PEAK 29(22Q13.1) MUTATED DEL PEAK 29(22Q13.1) WILD-TYPE
  CLUS_1                           15                             46
  CLUS_2                            9                             70
  CLUS_3                           14                             67
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(22Q13.1) MUTATED        6     11     21
  DEL PEAK 29(22Q13.1) WILD-TYPE     25     83     75
D25V4, multiclass
        clus
vv       DEL PEAK 29(22Q13.1) MUTATED DEL PEAK 29(22Q13.1) WILD-TYPE
  CLUS_1                            6                             25
  CLUS_2                           11                             83
  CLUS_3                           21                             75
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 29(22Q13.1) MUTATED       45      8     26      7
  DEL PEAK 29(22Q13.1) WILD-TYPE    109     47     90    160
D25V5, multiclass
        clus
vv       DEL PEAK 29(22Q13.1) MUTATED DEL PEAK 29(22Q13.1) WILD-TYPE
  CLUS_1                           45                            109
  CLUS_2                            8                             47
  CLUS_3                           26                             90
  CLUS_4                            7                            160
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 29(22Q13.1) MUTATED       13     39     23     11
  DEL PEAK 29(22Q13.1) WILD-TYPE    184     89     73     60
D25V6, multiclass
        clus
vv       DEL PEAK 29(22Q13.1) MUTATED DEL PEAK 29(22Q13.1) WILD-TYPE
  CLUS_1                           13                            184
  CLUS_2                           39                             89
  CLUS_3                           23                             73
  CLUS_4                           11                             60
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(22Q13.1) MUTATED       41     24     21
  DEL PEAK 29(22Q13.1) WILD-TYPE    109    149    149
D25V7, multiclass
        clus
vv       DEL PEAK 29(22Q13.1) MUTATED DEL PEAK 29(22Q13.1) WILD-TYPE
  CLUS_1                           41                            109
  CLUS_2                           24                            149
  CLUS_3                           21                            149
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(22Q13.1) MUTATED       22     38     26
  DEL PEAK 29(22Q13.1) WILD-TYPE    133     92    182
D25V8, multiclass
        clus
vv       DEL PEAK 29(22Q13.1) MUTATED DEL PEAK 29(22Q13.1) WILD-TYPE
  CLUS_1                           22                            133
  CLUS_2                           38                             92
  CLUS_3                           26                            182
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(22Q13.1) MUTATED       49     18     19
  DEL PEAK 29(22Q13.1) WILD-TYPE    114    151    142
D25V9, multiclass
        clus
vv       DEL PEAK 29(22Q13.1) MUTATED DEL PEAK 29(22Q13.1) WILD-TYPE
  CLUS_1                           49                            114
  CLUS_2                           18                            151
  CLUS_3                           19                            142
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(22Q13.1) MUTATED       24     38     24
  DEL PEAK 29(22Q13.1) WILD-TYPE    175     90    142
D25V10, multiclass
        clus
vv       DEL PEAK 29(22Q13.1) MUTATED DEL PEAK 29(22Q13.1) WILD-TYPE
  CLUS_1                           24                            175
  CLUS_2                           38                             90
  CLUS_3                           24                            142

Clustering(26) Variable = DEL PEAK 30(22Q13.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 30(22Q13.2) MUTATED        9      0     77
  DEL PEAK 30(22Q13.2) WILD-TYPE     25    383      0
D26V1, multiclass
        clus
vv       DEL PEAK 30(22Q13.2) MUTATED DEL PEAK 30(22Q13.2) WILD-TYPE
  CLUS_1                            9                             25
  CLUS_2                            0                            383
  CLUS_3                           77                              0
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 30(22Q13.2) MUTATED       45      7     34
  DEL PEAK 30(22Q13.2) WILD-TYPE    106     76    226
D26V2, multiclass
        clus
vv       DEL PEAK 30(22Q13.2) MUTATED DEL PEAK 30(22Q13.2) WILD-TYPE
  CLUS_1                           45                            106
  CLUS_2                            7                             76
  CLUS_3                           34                            226
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 30(22Q13.2) MUTATED       15      9     14
  DEL PEAK 30(22Q13.2) WILD-TYPE     46     70     67
D26V3, multiclass
        clus
vv       DEL PEAK 30(22Q13.2) MUTATED DEL PEAK 30(22Q13.2) WILD-TYPE
  CLUS_1                           15                             46
  CLUS_2                            9                             70
  CLUS_3                           14                             67
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 30(22Q13.2) MUTATED        6     11     21
  DEL PEAK 30(22Q13.2) WILD-TYPE     25     83     75
D26V4, multiclass
        clus
vv       DEL PEAK 30(22Q13.2) MUTATED DEL PEAK 30(22Q13.2) WILD-TYPE
  CLUS_1                            6                             25
  CLUS_2                           11                             83
  CLUS_3                           21                             75
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 30(22Q13.2) MUTATED       45      8     26      7
  DEL PEAK 30(22Q13.2) WILD-TYPE    109     47     90    160
D26V5, multiclass
        clus
vv       DEL PEAK 30(22Q13.2) MUTATED DEL PEAK 30(22Q13.2) WILD-TYPE
  CLUS_1                           45                            109
  CLUS_2                            8                             47
  CLUS_3                           26                             90
  CLUS_4                            7                            160
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 30(22Q13.2) MUTATED       13     39     23     11
  DEL PEAK 30(22Q13.2) WILD-TYPE    184     89     73     60
D26V6, multiclass
        clus
vv       DEL PEAK 30(22Q13.2) MUTATED DEL PEAK 30(22Q13.2) WILD-TYPE
  CLUS_1                           13                            184
  CLUS_2                           39                             89
  CLUS_3                           23                             73
  CLUS_4                           11                             60
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 30(22Q13.2) MUTATED       41     24     21
  DEL PEAK 30(22Q13.2) WILD-TYPE    109    149    149
D26V7, multiclass
        clus
vv       DEL PEAK 30(22Q13.2) MUTATED DEL PEAK 30(22Q13.2) WILD-TYPE
  CLUS_1                           41                            109
  CLUS_2                           24                            149
  CLUS_3                           21                            149
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 30(22Q13.2) MUTATED       22     38     26
  DEL PEAK 30(22Q13.2) WILD-TYPE    133     92    182
D26V8, multiclass
        clus
vv       DEL PEAK 30(22Q13.2) MUTATED DEL PEAK 30(22Q13.2) WILD-TYPE
  CLUS_1                           22                            133
  CLUS_2                           38                             92
  CLUS_3                           26                            182
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 30(22Q13.2) MUTATED       49     18     19
  DEL PEAK 30(22Q13.2) WILD-TYPE    114    151    142
D26V9, multiclass
        clus
vv       DEL PEAK 30(22Q13.2) MUTATED DEL PEAK 30(22Q13.2) WILD-TYPE
  CLUS_1                           49                            114
  CLUS_2                           18                            151
  CLUS_3                           19                            142
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 30(22Q13.2) MUTATED       24     38     24
  DEL PEAK 30(22Q13.2) WILD-TYPE    175     90    142
D26V10, multiclass
        clus
vv       DEL PEAK 30(22Q13.2) MUTATED DEL PEAK 30(22Q13.2) WILD-TYPE
  CLUS_1                           24                            175
  CLUS_2                           38                             90
  CLUS_3                           24                            142

Clustering(27) Variable = DEL PEAK 31(22Q13.31) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 31(22Q13.31) MUTATED        9      0     77
  DEL PEAK 31(22Q13.31) WILD-TYPE     25    383      0
D27V1, multiclass
        clus
vv       DEL PEAK 31(22Q13.31) MUTATED DEL PEAK 31(22Q13.31) WILD-TYPE
  CLUS_1                             9                              25
  CLUS_2                             0                             383
  CLUS_3                            77                               0
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 31(22Q13.31) MUTATED       45      7     34
  DEL PEAK 31(22Q13.31) WILD-TYPE    106     76    226
D27V2, multiclass
        clus
vv       DEL PEAK 31(22Q13.31) MUTATED DEL PEAK 31(22Q13.31) WILD-TYPE
  CLUS_1                            45                             106
  CLUS_2                             7                              76
  CLUS_3                            34                             226
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 31(22Q13.31) MUTATED       15      9     14
  DEL PEAK 31(22Q13.31) WILD-TYPE     46     70     67
D27V3, multiclass
        clus
vv       DEL PEAK 31(22Q13.31) MUTATED DEL PEAK 31(22Q13.31) WILD-TYPE
  CLUS_1                            15                              46
  CLUS_2                             9                              70
  CLUS_3                            14                              67
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 31(22Q13.31) MUTATED        6     11     21
  DEL PEAK 31(22Q13.31) WILD-TYPE     25     83     75
D27V4, multiclass
        clus
vv       DEL PEAK 31(22Q13.31) MUTATED DEL PEAK 31(22Q13.31) WILD-TYPE
  CLUS_1                             6                              25
  CLUS_2                            11                              83
  CLUS_3                            21                              75
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 31(22Q13.31) MUTATED       45      8     26      7
  DEL PEAK 31(22Q13.31) WILD-TYPE    109     47     90    160
D27V5, multiclass
        clus
vv       DEL PEAK 31(22Q13.31) MUTATED DEL PEAK 31(22Q13.31) WILD-TYPE
  CLUS_1                            45                             109
  CLUS_2                             8                              47
  CLUS_3                            26                              90
  CLUS_4                             7                             160
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 31(22Q13.31) MUTATED       13     39     23     11
  DEL PEAK 31(22Q13.31) WILD-TYPE    184     89     73     60
D27V6, multiclass
        clus
vv       DEL PEAK 31(22Q13.31) MUTATED DEL PEAK 31(22Q13.31) WILD-TYPE
  CLUS_1                            13                             184
  CLUS_2                            39                              89
  CLUS_3                            23                              73
  CLUS_4                            11                              60
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 31(22Q13.31) MUTATED       41     24     21
  DEL PEAK 31(22Q13.31) WILD-TYPE    109    149    149
D27V7, multiclass
        clus
vv       DEL PEAK 31(22Q13.31) MUTATED DEL PEAK 31(22Q13.31) WILD-TYPE
  CLUS_1                            41                             109
  CLUS_2                            24                             149
  CLUS_3                            21                             149
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 31(22Q13.31) MUTATED       22     38     26
  DEL PEAK 31(22Q13.31) WILD-TYPE    133     92    182
D27V8, multiclass
        clus
vv       DEL PEAK 31(22Q13.31) MUTATED DEL PEAK 31(22Q13.31) WILD-TYPE
  CLUS_1                            22                             133
  CLUS_2                            38                              92
  CLUS_3                            26                             182
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 31(22Q13.31) MUTATED       49     18     19
  DEL PEAK 31(22Q13.31) WILD-TYPE    114    151    142
D27V9, multiclass
        clus
vv       DEL PEAK 31(22Q13.31) MUTATED DEL PEAK 31(22Q13.31) WILD-TYPE
  CLUS_1                            49                             114
  CLUS_2                            18                             151
  CLUS_3                            19                             142
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 31(22Q13.31) MUTATED       24     38     24
  DEL PEAK 31(22Q13.31) WILD-TYPE    175     90    142
D27V10, multiclass
        clus
vv       DEL PEAK 31(22Q13.31) MUTATED DEL PEAK 31(22Q13.31) WILD-TYPE
  CLUS_1                            24                             175
  CLUS_2                            38                              90
  CLUS_3                            24                             142

Clustering(28) Variable = DEL PEAK 32(22Q13.32) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 32(22Q13.32) MUTATED        9      1     77
  DEL PEAK 32(22Q13.32) WILD-TYPE     25    382      0
D28V1, multiclass
        clus
vv       DEL PEAK 32(22Q13.32) MUTATED DEL PEAK 32(22Q13.32) WILD-TYPE
  CLUS_1                             9                              25
  CLUS_2                             1                             382
  CLUS_3                            77                               0
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 32(22Q13.32) MUTATED       46      7     34
  DEL PEAK 32(22Q13.32) WILD-TYPE    105     76    226
D28V2, multiclass
        clus
vv       DEL PEAK 32(22Q13.32) MUTATED DEL PEAK 32(22Q13.32) WILD-TYPE
  CLUS_1                            46                             105
  CLUS_2                             7                              76
  CLUS_3                            34                             226
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 32(22Q13.32) MUTATED       15      9     14
  DEL PEAK 32(22Q13.32) WILD-TYPE     46     70     67
D28V3, multiclass
        clus
vv       DEL PEAK 32(22Q13.32) MUTATED DEL PEAK 32(22Q13.32) WILD-TYPE
  CLUS_1                            15                              46
  CLUS_2                             9                              70
  CLUS_3                            14                              67
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 32(22Q13.32) MUTATED        6     11     21
  DEL PEAK 32(22Q13.32) WILD-TYPE     25     83     75
D28V4, multiclass
        clus
vv       DEL PEAK 32(22Q13.32) MUTATED DEL PEAK 32(22Q13.32) WILD-TYPE
  CLUS_1                             6                              25
  CLUS_2                            11                              83
  CLUS_3                            21                              75
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 32(22Q13.32) MUTATED       46      8     26      7
  DEL PEAK 32(22Q13.32) WILD-TYPE    108     47     90    160
D28V5, multiclass
        clus
vv       DEL PEAK 32(22Q13.32) MUTATED DEL PEAK 32(22Q13.32) WILD-TYPE
  CLUS_1                            46                             108
  CLUS_2                             8                              47
  CLUS_3                            26                              90
  CLUS_4                             7                             160
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 32(22Q13.32) MUTATED       13     40     23     11
  DEL PEAK 32(22Q13.32) WILD-TYPE    184     88     73     60
D28V6, multiclass
        clus
vv       DEL PEAK 32(22Q13.32) MUTATED DEL PEAK 32(22Q13.32) WILD-TYPE
  CLUS_1                            13                             184
  CLUS_2                            40                              88
  CLUS_3                            23                              73
  CLUS_4                            11                              60
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 32(22Q13.32) MUTATED       42     24     21
  DEL PEAK 32(22Q13.32) WILD-TYPE    108    149    149
D28V7, multiclass
        clus
vv       DEL PEAK 32(22Q13.32) MUTATED DEL PEAK 32(22Q13.32) WILD-TYPE
  CLUS_1                            42                             108
  CLUS_2                            24                             149
  CLUS_3                            21                             149
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 32(22Q13.32) MUTATED       22     39     26
  DEL PEAK 32(22Q13.32) WILD-TYPE    133     91    182
D28V8, multiclass
        clus
vv       DEL PEAK 32(22Q13.32) MUTATED DEL PEAK 32(22Q13.32) WILD-TYPE
  CLUS_1                            22                             133
  CLUS_2                            39                              91
  CLUS_3                            26                             182
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 32(22Q13.32) MUTATED       50     18     19
  DEL PEAK 32(22Q13.32) WILD-TYPE    113    151    142
D28V9, multiclass
        clus
vv       DEL PEAK 32(22Q13.32) MUTATED DEL PEAK 32(22Q13.32) WILD-TYPE
  CLUS_1                            50                             113
  CLUS_2                            18                             151
  CLUS_3                            19                             142
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 32(22Q13.32) MUTATED       24     39     24
  DEL PEAK 32(22Q13.32) WILD-TYPE    175     89    142
D28V10, multiclass
        clus
vv       DEL PEAK 32(22Q13.32) MUTATED DEL PEAK 32(22Q13.32) WILD-TYPE
  CLUS_1                            24                             175
  CLUS_2                            39                              89
  CLUS_3                            24                             142

Clustering(29) Variable = DEL PEAK 33(XQ22.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 33(XQ22.1) MUTATED        2      4      0
  DEL PEAK 33(XQ22.1) WILD-TYPE     32    379     77
D29V1, multiclass
        clus
vv       DEL PEAK 33(XQ22.1) MUTATED DEL PEAK 33(XQ22.1) WILD-TYPE
  CLUS_1                           2                            32
  CLUS_2                           4                           379
  CLUS_3                           0                            77
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 33(XQ22.1) MUTATED        3      1      2
  DEL PEAK 33(XQ22.1) WILD-TYPE    148     82    258
D29V2, multiclass
        clus
vv       DEL PEAK 33(XQ22.1) MUTATED DEL PEAK 33(XQ22.1) WILD-TYPE
  CLUS_1                           3                           148
  CLUS_2                           1                            82
  CLUS_3                           2                           258
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 33(XQ22.1) MUTATED        3      0      1
  DEL PEAK 33(XQ22.1) WILD-TYPE     58     79     80
D29V3, multiclass
        clus
vv       DEL PEAK 33(XQ22.1) MUTATED DEL PEAK 33(XQ22.1) WILD-TYPE
  CLUS_1                           3                            58
  CLUS_2                           0                            79
  CLUS_3                           1                            80
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 33(XQ22.1) MUTATED        0      0      4
  DEL PEAK 33(XQ22.1) WILD-TYPE     31     94     92
D29V4, multiclass
        clus
vv       DEL PEAK 33(XQ22.1) MUTATED DEL PEAK 33(XQ22.1) WILD-TYPE
  CLUS_1                           0                            31
  CLUS_2                           0                            94
  CLUS_3                           4                            92
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 33(XQ22.1) MUTATED        3      1      1      1
  DEL PEAK 33(XQ22.1) WILD-TYPE    151     54    115    166
D29V5, multiclass
        clus
vv       DEL PEAK 33(XQ22.1) MUTATED DEL PEAK 33(XQ22.1) WILD-TYPE
  CLUS_1                           3                           151
  CLUS_2                           1                            54
  CLUS_3                           1                           115
  CLUS_4                           1                           166
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 33(XQ22.1) MUTATED        2      3      1      0
  DEL PEAK 33(XQ22.1) WILD-TYPE    195    125     95     71
D29V6, multiclass
        clus
vv       DEL PEAK 33(XQ22.1) MUTATED DEL PEAK 33(XQ22.1) WILD-TYPE
  CLUS_1                           2                           195
  CLUS_2                           3                           125
  CLUS_3                           1                            95
  CLUS_4                           0                            71
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 33(XQ22.1) MUTATED        3      2      1
  DEL PEAK 33(XQ22.1) WILD-TYPE    147    171    169
D29V7, multiclass
        clus
vv       DEL PEAK 33(XQ22.1) MUTATED DEL PEAK 33(XQ22.1) WILD-TYPE
  CLUS_1                           3                           147
  CLUS_2                           2                           171
  CLUS_3                           1                           169
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 33(XQ22.1) MUTATED        2      3      1
  DEL PEAK 33(XQ22.1) WILD-TYPE    153    127    207
D29V8, multiclass
        clus
vv       DEL PEAK 33(XQ22.1) MUTATED DEL PEAK 33(XQ22.1) WILD-TYPE
  CLUS_1                           2                           153
  CLUS_2                           3                           127
  CLUS_3                           1                           207
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 33(XQ22.1) MUTATED        3      2      1
  DEL PEAK 33(XQ22.1) WILD-TYPE    160    167    160
D29V9, multiclass
        clus
vv       DEL PEAK 33(XQ22.1) MUTATED DEL PEAK 33(XQ22.1) WILD-TYPE
  CLUS_1                           3                           160
  CLUS_2                           2                           167
  CLUS_3                           1                           160
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 33(XQ22.1) MUTATED        1      3      2
  DEL PEAK 33(XQ22.1) WILD-TYPE    198    125    164
D29V10, multiclass
        clus
vv       DEL PEAK 33(XQ22.1) MUTATED DEL PEAK 33(XQ22.1) WILD-TYPE
  CLUS_1                           1                           198
  CLUS_2                           3                           125
  CLUS_3                           2                           164

Clustering(30) Variable = DEL PEAK 34(XQ22.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 34(XQ22.3) MUTATED        2      2      0
  DEL PEAK 34(XQ22.3) WILD-TYPE     32    381     77
D30V1, multiclass
        clus
vv       DEL PEAK 34(XQ22.3) MUTATED DEL PEAK 34(XQ22.3) WILD-TYPE
  CLUS_1                           2                            32
  CLUS_2                           2                           381
  CLUS_3                           0                            77
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 34(XQ22.3) MUTATED        3      1      0
  DEL PEAK 34(XQ22.3) WILD-TYPE    148     82    260
D30V2, multiclass
        clus
vv       DEL PEAK 34(XQ22.3) MUTATED DEL PEAK 34(XQ22.3) WILD-TYPE
  CLUS_1                           3                           148
  CLUS_2                           1                            82
  CLUS_3                           0                           260
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 34(XQ22.3) MUTATED        2      0      1
  DEL PEAK 34(XQ22.3) WILD-TYPE     59     79     80
D30V3, multiclass
        clus
vv       DEL PEAK 34(XQ22.3) MUTATED DEL PEAK 34(XQ22.3) WILD-TYPE
  CLUS_1                           2                            59
  CLUS_2                           0                            79
  CLUS_3                           1                            80
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 34(XQ22.3) MUTATED        0      0      3
  DEL PEAK 34(XQ22.3) WILD-TYPE     31     94     93
D30V4, multiclass
        clus
vv       DEL PEAK 34(XQ22.3) MUTATED DEL PEAK 34(XQ22.3) WILD-TYPE
  CLUS_1                           0                            31
  CLUS_2                           0                            94
  CLUS_3                           3                            93
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 34(XQ22.3) MUTATED        3      1      0      0
  DEL PEAK 34(XQ22.3) WILD-TYPE    151     54    116    167
D30V5, multiclass
        clus
vv       DEL PEAK 34(XQ22.3) MUTATED DEL PEAK 34(XQ22.3) WILD-TYPE
  CLUS_1                           3                           151
  CLUS_2                           1                            54
  CLUS_3                           0                           116
  CLUS_4                           0                           167
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 34(XQ22.3) MUTATED        1      3      0      0
  DEL PEAK 34(XQ22.3) WILD-TYPE    196    125     96     71
D30V6, multiclass
        clus
vv       DEL PEAK 34(XQ22.3) MUTATED DEL PEAK 34(XQ22.3) WILD-TYPE
  CLUS_1                           1                           196
  CLUS_2                           3                           125
  CLUS_3                           0                            96
  CLUS_4                           0                            71
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 34(XQ22.3) MUTATED        3      1      0
  DEL PEAK 34(XQ22.3) WILD-TYPE    147    172    170
D30V7, multiclass
        clus
vv       DEL PEAK 34(XQ22.3) MUTATED DEL PEAK 34(XQ22.3) WILD-TYPE
  CLUS_1                           3                           147
  CLUS_2                           1                           172
  CLUS_3                           0                           170
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 34(XQ22.3) MUTATED        1      3      0
  DEL PEAK 34(XQ22.3) WILD-TYPE    154    127    208
D30V8, multiclass
        clus
vv       DEL PEAK 34(XQ22.3) MUTATED DEL PEAK 34(XQ22.3) WILD-TYPE
  CLUS_1                           1                           154
  CLUS_2                           3                           127
  CLUS_3                           0                           208
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 34(XQ22.3) MUTATED        3      1      0
  DEL PEAK 34(XQ22.3) WILD-TYPE    160    168    161
D30V9, multiclass
        clus
vv       DEL PEAK 34(XQ22.3) MUTATED DEL PEAK 34(XQ22.3) WILD-TYPE
  CLUS_1                           3                           160
  CLUS_2                           1                           168
  CLUS_3                           0                           161
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 34(XQ22.3) MUTATED        0      3      1
  DEL PEAK 34(XQ22.3) WILD-TYPE    199    125    165
D30V10, multiclass
        clus
vv       DEL PEAK 34(XQ22.3) MUTATED DEL PEAK 34(XQ22.3) WILD-TYPE
  CLUS_1                           0                           199
  CLUS_2                           3                           125
  CLUS_3                           1                           165
> q(save="no")
